Citrus Sinensis ID: 018819
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 350 | 2.2.26 [Sep-21-2011] | |||||||
| Q41249 | 398 | Protochlorophyllide reduc | N/A | no | 0.994 | 0.874 | 0.859 | 1e-175 | |
| Q42536 | 405 | Protochlorophyllide reduc | yes | no | 0.997 | 0.861 | 0.825 | 1e-170 | |
| Q9SDT1 | 398 | Protochlorophyllide reduc | N/A | no | 0.988 | 0.869 | 0.823 | 1e-164 | |
| Q01289 | 399 | Protochlorophyllide reduc | N/A | no | 0.994 | 0.872 | 0.834 | 1e-164 | |
| P21218 | 401 | Protochlorophyllide reduc | no | no | 0.994 | 0.867 | 0.806 | 1e-159 | |
| O48741 | 401 | Protochlorophyllide reduc | no | no | 0.991 | 0.865 | 0.764 | 1e-152 | |
| Q42850 | 395 | Protochlorophyllide reduc | N/A | no | 0.982 | 0.870 | 0.737 | 1e-151 | |
| Q8W3D9 | 402 | Protochlorophyllide reduc | yes | no | 0.982 | 0.855 | 0.730 | 1e-149 | |
| O80333 | 458 | Protochlorophyllide reduc | N/A | no | 0.914 | 0.698 | 0.694 | 1e-132 | |
| P13653 | 388 | Protochlorophyllide reduc | N/A | no | 0.954 | 0.860 | 0.705 | 1e-132 |
| >sp|Q41249|PORA_CUCSA Protochlorophyllide reductase, chloroplastic OS=Cucumis sativus GN=PORA PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 613 bits (1582), Expect = e-175, Method: Compositional matrix adjust.
Identities = 300/349 (85%), Positives = 326/349 (93%), Gaps = 1/349 (0%)
Query: 1 MALQAAALVPSAFSVPKEGKTSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQRNGV 60
MALQAA+LV A S+PKEGK+S KDSSLFG+SFS+H K++FSSS LRCKRE +Q+ G
Sbjct: 1 MALQAASLVSPALSIPKEGKSSVCLKDSSLFGISFSDHLKSEFSSSTLRCKRELNQQIGA 60
Query: 61 VRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120
+RAQT AT SPAV+ ++P GKKTLRKGSV+ITGASSGLGLATAKALAETGKWH+IMACRD
Sbjct: 61 IRAQTTATESPAVNKATPDGKKTLRKGSVVITGASSGLGLATAKALAETGKWHVIMACRD 120
Query: 121 FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAK 180
FLKAERAAKSAG+ KENYT+MHLDLASLDSVRQFVD FR+SGRPLDVLVCNAAVYLPTAK
Sbjct: 121 FLKAERAAKSAGITKENYTVMHLDLASLDSVRQFVDNFRQSGRPLDVLVCNAAVYLPTAK 180
Query: 181 EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240
EPTFTAEGFELSVGTNHLGHFLLSRLLL+DL +S YPSKRLIIVGSITGNTNTLAGNVPP
Sbjct: 181 EPTFTAEGFELSVGTNHLGHFLLSRLLLEDLNKSSYPSKRLIIVGSITGNTNTLAGNVPP 240
Query: 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAF 300
KANLGDLRG AGGLNGL SSMIDGG+FDGAKAYKDSKVCNMLTMQEFH+R+HEETGI F
Sbjct: 241 KANLGDLRGLAGGLNGLK-SSMIDGGEFDGAKAYKDSKVCNMLTMQEFHKRYHEETGITF 299
Query: 301 ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349
ASLYPGCIATTGLFREHIPLFR+LFPPFQK+IT+GYVSEDEAGKRLAQV
Sbjct: 300 ASLYPGCIATTGLFREHIPLFRILFPPFQKFITQGYVSEDEAGKRLAQV 348
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Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide). Cucumis sativus (taxid: 3659) EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: 3EC: 3 |
| >sp|Q42536|PORA_ARATH Protochlorophyllide reductase A, chloroplastic OS=Arabidopsis thaliana GN=PORA PE=1 SV=2 | Back alignment and function description |
|---|
Score = 598 bits (1542), Expect = e-170, Method: Compositional matrix adjust.
Identities = 293/355 (82%), Positives = 317/355 (89%), Gaps = 6/355 (1%)
Query: 1 MALQAAALVPSAFSVPKEGKTSASFKDSS----LFGVSFSEHAKADFSSSALRCKREFSQ 56
MALQAA+LV SAFSV K+GK +AS S LFGVS SE +KADF SS+LRCKRE S
Sbjct: 1 MALQAASLVSSAFSVRKDGKLNASASSSFKESSLFGVSLSEQSKADFVSSSLRCKREQSL 60
Query: 57 RN--GVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHI 114
RN ++RAQ +AT++P+V SS KKTLRKG+V++TGASSGLGLATAKALAETGKWH+
Sbjct: 61 RNNKAIIRAQAIATSTPSVTKSSLDRKKTLRKGNVVVTGASSGLGLATAKALAETGKWHV 120
Query: 115 IMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAV 174
IMACRDFLKAERAA+SAGM K++YT+MHLDLASLDSVRQFVD FRR+ PLDVLVCNAAV
Sbjct: 121 IMACRDFLKAERAAQSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRAEMPLDVLVCNAAV 180
Query: 175 YLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTL 234
Y PTA +PTFTAEGFELSVG NHLGHFLLSRLL+DDLK SDYPSKRLIIVGSITGNTNTL
Sbjct: 181 YQPTANQPTFTAEGFELSVGINHLGHFLLSRLLIDDLKNSDYPSKRLIIVGSITGNTNTL 240
Query: 235 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE 294
AGNVPPKANLGDLRG AGGLNGLNSS+MIDGGDF GAKAYKDSKVCNMLTMQEFHRRFHE
Sbjct: 241 AGNVPPKANLGDLRGLAGGLNGLNSSAMIDGGDFVGAKAYKDSKVCNMLTMQEFHRRFHE 300
Query: 295 ETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349
+TGI FASLYPGCIATTGLFREHIPLFR LFPPFQKYITKGYVSE EAGKRLAQV
Sbjct: 301 DTGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSESEAGKRLAQV 355
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Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide). PORA may also function as a photoprotectant during the transitory stage from dark to light. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 3 EC: 3 |
| >sp|Q9SDT1|POR_DAUCA Protochlorophyllide reductase, chloroplastic OS=Daucus carota GN=POR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 577 bits (1488), Expect = e-164, Method: Compositional matrix adjust.
Identities = 289/351 (82%), Positives = 320/351 (91%), Gaps = 5/351 (1%)
Query: 1 MALQAAALVPSAFSVPKEGKTSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQ--RN 58
MALQAA+ +PS+FS+ KEGK + S K++SLFGV+FS+ + DFSS LR +R Q +
Sbjct: 1 MALQAASFLPSSFSINKEGKANVSLKETSLFGVTFSDSLRTDFSS--LRTRRGCRQISQT 58
Query: 59 GVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMAC 118
G +R+Q +AT +P+V+ ++ +GKKTLRKGSVIITGASSGLGLATAKALAETGKWH+IMAC
Sbjct: 59 GAIRSQAVAT-TPSVNRATGEGKKTLRKGSVIITGASSGLGLATAKALAETGKWHVIMAC 117
Query: 119 RDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPT 178
RDFLKAERAAKSAGM KENYTIMHLDLASLDSVRQFV+TFRRS RPLDVLVCNAAVY PT
Sbjct: 118 RDFLKAERAAKSAGMPKENYTIMHLDLASLDSVRQFVETFRRSERPLDVLVCNAAVYFPT 177
Query: 179 AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238
AKEPT+TA+GFELSVGTNHLGHFLLSRLLLDDL +SDYPSKRLIIVGSITGNTNTLAGNV
Sbjct: 178 AKEPTYTADGFELSVGTNHLGHFLLSRLLLDDLNKSDYPSKRLIIVGSITGNTNTLAGNV 237
Query: 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGI 298
PPKANLGDLRG AGGLNG+NSS+MIDG +FDGAKAYKDSKVCNMLTMQEFHRR+HEETGI
Sbjct: 238 PPKANLGDLRGLAGGLNGMNSSAMIDGAEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGI 297
Query: 299 AFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349
FASLYPGCIATTGLFREHIPLFR LFPPFQKYITKGYVSE E+GKRLAQV
Sbjct: 298 TFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSEAESGKRLAQV 348
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Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide). Daucus carota (taxid: 4039) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 3 EC: 3 |
| >sp|Q01289|POR_PEA Protochlorophyllide reductase, chloroplastic OS=Pisum sativum GN=3PCR PE=1 SV=1 | Back alignment and function description |
|---|
Score = 576 bits (1485), Expect = e-164, Method: Compositional matrix adjust.
Identities = 292/350 (83%), Positives = 322/350 (92%), Gaps = 2/350 (0%)
Query: 1 MALQAAALVPSAFSVPKEGKTSASFKDSSLFGVS-FSEHAKADFSSSALRCKREFSQRNG 59
MALQ A+++P++FS+PKEGK AS KDS+LFGVS S+ K DF+SSALRCK E Q+ G
Sbjct: 1 MALQTASMLPASFSIPKEGKIGASLKDSTLFGVSSLSDSLKGDFTSSALRCK-ELRQKVG 59
Query: 60 VVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR 119
VRA+T A A+PAV+ SS +GKKTLRKG+V+ITGASSGLGLATAKALAE+GKWH+IMACR
Sbjct: 60 AVRAETAAPATPAVNKSSSEGKKTLRKGNVVITGASSGLGLATAKALAESGKWHVIMACR 119
Query: 120 DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTA 179
D+LKA RAAKSAG+AKENYTIMHLDLASLDSVRQFVD FRRS PLDVL+ NAAVY PTA
Sbjct: 120 DYLKAARAAKSAGLAKENYTIMHLDLASLDSVRQFVDNFRRSEMPLDVLINNAAVYFPTA 179
Query: 180 KEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239
KEP+FTA+GFE+SVGTNHLGHFLLSRLLL+DLK+SDYPSKRLIIVGSITGNTNTLAGNVP
Sbjct: 180 KEPSFTADGFEISVGTNHLGHFLLSRLLLEDLKKSDYPSKRLIIVGSITGNTNTLAGNVP 239
Query: 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIA 299
PKANLGDLRG AGGL GLNSS+MIDGGDFDGAKAYKDSKVCNMLTMQEFHRR+HEETGI
Sbjct: 240 PKANLGDLRGLAGGLTGLNSSAMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRYHEETGIT 299
Query: 300 FASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349
FASLYPGCIATTGLFREHIPLFR LFPPFQKYITKGYVSE+E+GKRLAQV
Sbjct: 300 FASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSEEESGKRLAQV 349
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Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide). Pisum sativum (taxid: 3888) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 3 EC: 3 |
| >sp|P21218|PORB_ARATH Protochlorophyllide reductase B, chloroplastic OS=Arabidopsis thaliana GN=PORB PE=1 SV=3 | Back alignment and function description |
|---|
Score = 561 bits (1446), Expect = e-159, Method: Compositional matrix adjust.
Identities = 284/352 (80%), Positives = 311/352 (88%), Gaps = 4/352 (1%)
Query: 1 MALQAAALVPSAFSVPKEGKTSASFKDSS---LFGVSFSEHAKADFSSSALRCKREFSQR 57
MALQAA+LV SAFSV K+ K +AS LFG S ++ K++ SS+LR KRE S R
Sbjct: 1 MALQAASLVSSAFSVRKDAKLNASSSSFKDSSLFGASITDQIKSEHGSSSLRFKREQSLR 60
Query: 58 NGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMA 117
N +RAQT AT+SP V S GKKTLRKG+V++TGASSGLGLATAKALAETGKW++IMA
Sbjct: 61 NLAIRAQTAATSSPTV-TKSVDGKKTLRKGNVVVTGASSGLGLATAKALAETGKWNVIMA 119
Query: 118 CRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLP 177
CRDFLKAERAAKS GM K++YT+MHLDLASLDSVRQFVD FRR+ PLDVLVCNAAVY P
Sbjct: 120 CRDFLKAERAAKSVGMPKDSYTVMHLDLASLDSVRQFVDNFRRTETPLDVLVCNAAVYFP 179
Query: 178 TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237
TAKEPT++AEGFELSV TNHLGHFLL+RLLLDDLK+SDYPSKRLIIVGSITGNTNTLAGN
Sbjct: 180 TAKEPTYSAEGFELSVATNHLGHFLLARLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGN 239
Query: 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETG 297
VPPKANLGDLRG AGGLNGLNSS+MIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETG
Sbjct: 240 VPPKANLGDLRGLAGGLNGLNSSAMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETG 299
Query: 298 IAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349
+ FASLYPGCIA+TGLFREHIPLFR LFPPFQKYITKGYVSE E+GKRLAQV
Sbjct: 300 VTFASLYPGCIASTGLFREHIPLFRALFPPFQKYITKGYVSETESGKRLAQV 351
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Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide). Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 3 EC: 3 |
| >sp|O48741|PORC_ARATH Protochlorophyllide reductase C, chloroplastic OS=Arabidopsis thaliana GN=PORC PE=1 SV=1 | Back alignment and function description |
|---|
Score = 538 bits (1387), Expect = e-152, Method: Compositional matrix adjust.
Identities = 270/353 (76%), Positives = 312/353 (88%), Gaps = 6/353 (1%)
Query: 1 MALQAA-ALVPSAFSVPKEGKTSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQR-- 57
MALQAA +L+PS S+ KEGK +AS K+++ G SFS H +A+ S+ L K + Q+
Sbjct: 1 MALQAAYSLLPSTISIQKEGKFNASLKETTFTGSSFSNHLRAEKISTLLTIKEQRRQKPR 60
Query: 58 -NGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIM 116
+ +RAQT+ TA+P + +SP+ KKT RKG+ +ITGASSGLGLATAKALA+TGKWH+IM
Sbjct: 61 FSTGIRAQTV-TATPPANEASPEQKKTERKGTAVITGASSGLGLATAKALADTGKWHVIM 119
Query: 117 ACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYL 176
ACR+FLKAE+AA+S GM+KE+YT+MHLDLASL+SV+QFV+ FRR+ +PLDVLVCNAAVY
Sbjct: 120 ACRNFLKAEKAARSVGMSKEDYTVMHLDLASLESVKQFVENFRRTEQPLDVLVCNAAVYQ 179
Query: 177 PTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236
PTAKEP+FTAEGFE+SVGTNHLGHFLLSRLLLDDLK+SDYPSKR+IIVGSITGNTNTLAG
Sbjct: 180 PTAKEPSFTAEGFEISVGTNHLGHFLLSRLLLDDLKKSDYPSKRMIIVGSITGNTNTLAG 239
Query: 237 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEET 296
NVPPKANLGDLRG A GLNG N SSMIDGG+FDGAKAYKDSKVCNMLTMQE HRR+HEET
Sbjct: 240 NVPPKANLGDLRGLASGLNGQN-SSMIDGGEFDGAKAYKDSKVCNMLTMQELHRRYHEET 298
Query: 297 GIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349
G+ FASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSE+EAGKRLAQV
Sbjct: 299 GVTFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQV 351
|
Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide). Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 3 EC: 3 |
| >sp|Q42850|PORB_HORVU Protochlorophyllide reductase B, chloroplastic OS=Hordeum vulgare GN=PORB PE=2 SV=1 | Back alignment and function description |
|---|
Score = 533 bits (1373), Expect = e-151, Method: Compositional matrix adjust.
Identities = 258/350 (73%), Positives = 295/350 (84%), Gaps = 6/350 (1%)
Query: 1 MALQAA-ALVPSAFSVPKEGKTSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQRNG 59
MALQAA + +PSA S KEG + KDS+ FGV ++ K D +S LR KR + +
Sbjct: 1 MALQAATSFLPSALSARKEG----AAKDSAFFGVRLADGLKLDATSLGLRTKR-VNTSSV 55
Query: 60 VVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR 119
+RAQ A ++P +SP GKKT+R G+ IITGASSGLGLATAKALAE+GKWH+IMACR
Sbjct: 56 AIRAQAAAVSAPTATPASPAGKKTVRTGNAIITGASSGLGLATAKALAESGKWHVIMACR 115
Query: 120 DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTA 179
D+LK RAA++AGM K +YTI+HLDLASLDSVRQFV R+ P+DV+VCNAAVY PTA
Sbjct: 116 DYLKTARAARAAGMPKGSYTIVHLDLASLDSVRQFVKNVRQLDMPIDVVVCNAAVYQPTA 175
Query: 180 KEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239
KEP+FTA+GFE+SVG NHLGHFLL+R LL+DLK SDYPSKRLIIVGSITGNTNTLAGNVP
Sbjct: 176 KEPSFTADGFEMSVGVNHLGHFLLARELLEDLKASDYPSKRLIIVGSITGNTNTLAGNVP 235
Query: 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIA 299
PKANLGDLRG A GLNG+ S++MIDG +FDGAKAYKDSKVCNMLTMQEFHRR+HEETG+
Sbjct: 236 PKANLGDLRGLAAGLNGVGSAAMIDGAEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGVT 295
Query: 300 FASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349
FASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSE+EAGKRLAQV
Sbjct: 296 FASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQV 345
|
Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide). Hordeum vulgare (taxid: 4513) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 3 EC: 3 |
| >sp|Q8W3D9|PORB_ORYSJ Protochlorophyllide reductase B, chloroplastic OS=Oryza sativa subsp. japonica GN=PORB PE=2 SV=1 | Back alignment and function description |
|---|
Score = 526 bits (1356), Expect = e-149, Method: Compositional matrix adjust.
Identities = 258/353 (73%), Positives = 295/353 (83%), Gaps = 9/353 (2%)
Query: 1 MALQAA---ALVPSAFSVPKEGKTSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQR 57
MALQAA + +PSA S KEG + KDS+ GV + K + S+ LR KR S
Sbjct: 1 MALQAATTTSFLPSALSARKEG----AVKDSAFLGVRLGDGLKLETSALGLRTKR-VSTS 55
Query: 58 NGVVRAQ-TMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIM 116
+ +RAQ + A +SP V +SP GK+TLRKG+ +ITGASSGLGLATAKALAETG+WH++M
Sbjct: 56 SVAIRAQASAAVSSPTVTPASPSGKQTLRKGTAVITGASSGLGLATAKALAETGRWHVVM 115
Query: 117 ACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYL 176
CRDFLKA RAAK+AGM K +YTI+HLDLASLDSVRQFV RR P+DV+VCNAAVY
Sbjct: 116 GCRDFLKASRAAKAAGMEKGSYTIVHLDLASLDSVRQFVANVRRLEMPVDVVVCNAAVYQ 175
Query: 177 PTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236
PTAK+P+FTA+GFE+SVG NHLGHFLL+R LL DL SDYPSKRLIIVGSITGNTNTLAG
Sbjct: 176 PTAKQPSFTADGFEMSVGVNHLGHFLLARELLADLTSSDYPSKRLIIVGSITGNTNTLAG 235
Query: 237 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEET 296
NVPPKANLGDLRG A GL+G++SS+MIDGG+FDGAKAYKDSKVCNMLTMQEFHRR+H ET
Sbjct: 236 NVPPKANLGDLRGLASGLDGVSSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHGET 295
Query: 297 GIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349
G+ FASLYPGCIATTGLFREH+PLFRLLFPPFQKYITKGYVSE+EAGKRLAQV
Sbjct: 296 GVTFASLYPGCIATTGLFREHVPLFRLLFPPFQKYITKGYVSEEEAGKRLAQV 348
|
Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide). Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 3 EC: 3 |
| >sp|O80333|POR_MARPA Protochlorophyllide reductase, chloroplastic OS=Marchantia paleacea GN=PORA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 472 bits (1215), Expect = e-132, Method: Compositional matrix adjust.
Identities = 227/327 (69%), Positives = 265/327 (81%), Gaps = 7/327 (2%)
Query: 26 KDSSLFGVSFSEHAK---ADFSSSALRCKREFSQRNGVVRAQTMATASPAVDVSSPQGKK 82
K+S+ G+ E AK A S S + + GV+ A +PA ++ P KK
Sbjct: 86 KESAFLGLRMGEVAKFGGALLSVSTVAAN--LKSKPGVLSVN--AVTAPAETMNKPSSKK 141
Query: 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMH 142
T K + IITGASSGLGLATAKALA+TG+WH+IMACRDFLKAERAA+S G+ K++YT++H
Sbjct: 142 TATKSTCIITGASSGLGLATAKALADTGEWHVIMACRDFLKAERAARSVGIPKDSYTVIH 201
Query: 143 LDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 202
DLAS DSVR FVD FRR+ R LDVLVCNAAVY PT KEP F+AEGFELSVGTNH+GHFL
Sbjct: 202 CDLASFDSVRAFVDNFRRTERQLDVLVCNAAVYFPTDKEPKFSAEGFELSVGTNHMGHFL 261
Query: 203 LSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSM 262
L+RLL++DL+++ KR+IIVGSITGN+NT+AGNVPPKANLG LRG AGGLNG+NSSSM
Sbjct: 262 LARLLMEDLQKAKDSLKRMIIVGSITGNSNTVAGNVPPKANLGHLRGLAGGLNGVNSSSM 321
Query: 263 IDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322
IDGG+FDGAKAYKDSKVCNM TMQEFHRR+H ETGI F+SLYPGCIA TGLFR H+ LFR
Sbjct: 322 IDGGEFDGAKAYKDSKVCNMFTMQEFHRRYHAETGITFSSLYPGCIAETGLFRNHVTLFR 381
Query: 323 LLFPPFQKYITKGYVSEDEAGKRLAQV 349
LFPPFQKYITKGYVSE+EAGKR+AQV
Sbjct: 382 TLFPPFQKYITKGYVSEEEAGKRMAQV 408
|
Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide). Marchantia paleacea (taxid: 56867) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 3 EC: 3 |
| >sp|P13653|PORA_HORVU Protochlorophyllide reductase A, chloroplastic OS=Hordeum vulgare GN=PORA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 471 bits (1212), Expect = e-132, Method: Compositional matrix adjust.
Identities = 249/353 (70%), Positives = 294/353 (83%), Gaps = 19/353 (5%)
Query: 1 MALQAAALVPSAFSVPKEGKT--SASFKDSSLF-GVSFSEHAKADFSSSALRCKREFSQR 57
MALQ L+PS SVPK+G + + + KD++ F GVS +KA +S A+R +
Sbjct: 1 MALQ---LLPSTLSVPKKGSSMGAVAVKDTAAFLGVS----SKAKKASLAVRTQ------ 47
Query: 58 NGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMA 117
V A + T SP SSP GKKTLR+G V+ITGASSGLGLA AKALAETGKWH++MA
Sbjct: 48 --VATAPSPVTTSPGSTASSPSGKKTLRQGVVVITGASSGLGLAAAKALAETGKWHVVMA 105
Query: 118 CRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLP 177
CRDFLKA +AAK+AGMA +YT+MHLDLASLDSVRQFVD FRR+ PLDVLVCNAA+Y P
Sbjct: 106 CRDFLKASKAAKAAGMADGSYTVMHLDLASLDSVRQFVDAFRRAEMPLDVLVCNAAIYRP 165
Query: 178 TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237
TA+ PTFTA+G E+SVG NHLGHFLL+RLL++DL++SDYPS+R++IVGSITGN+NTLAGN
Sbjct: 166 TARTPTFTADGHEMSVGVNHLGHFLLARLLMEDLQKSDYPSRRMVIVGSITGNSNTLAGN 225
Query: 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGD-FDGAKAYKDSKVCNMLTMQEFHRRFHEET 296
VPPKA+LGDLRG AGGL+G + S+MIDG + FDGAKAYKDSKVCNMLTMQEFHRR+HEET
Sbjct: 226 VPPKASLGDLRGLAGGLSGASGSAMIDGDESFDGAKAYKDSKVCNMLTMQEFHRRYHEET 285
Query: 297 GIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349
GI F+SLYPGCIATTGLFREHIPLFR LFPPFQK++TKG+VSE E+GKRLAQV
Sbjct: 286 GITFSSLYPGCIATTGLFREHIPLFRTLFPPFQKFVTKGFVSEAESGKRLAQV 338
|
Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide). Hordeum vulgare (taxid: 4513) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 3 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 350 | ||||||
| 224117218 | 399 | predicted protein [Populus trichocarpa] | 0.997 | 0.874 | 0.876 | 1e-180 | |
| 449446951 | 399 | PREDICTED: protochlorophyllide reductase | 0.997 | 0.874 | 0.871 | 1e-177 | |
| 356544016 | 399 | PREDICTED: protochlorophyllide reductase | 0.997 | 0.874 | 0.888 | 1e-177 | |
| 255587362 | 396 | short-chain dehydrogenase, putative [Ric | 0.985 | 0.871 | 0.889 | 1e-174 | |
| 224128374 | 399 | predicted protein [Populus trichocarpa] | 0.997 | 0.874 | 0.873 | 1e-174 | |
| 10720220 | 398 | RecName: Full=Protochlorophyllide reduct | 0.994 | 0.874 | 0.859 | 1e-173 | |
| 359493870 | 396 | PREDICTED: protochlorophyllide reductase | 0.988 | 0.873 | 0.868 | 1e-172 | |
| 297796287 | 404 | hypothetical protein ARALYDRAFT_495501 [ | 0.997 | 0.863 | 0.830 | 1e-170 | |
| 356517168 | 399 | PREDICTED: protochlorophyllide reductase | 0.997 | 0.874 | 0.836 | 1e-169 | |
| 15239574 | 405 | protochlorophyllide reductase A [Arabido | 0.997 | 0.861 | 0.825 | 1e-168 |
| >gi|224117218|ref|XP_002317511.1| predicted protein [Populus trichocarpa] gi|222860576|gb|EEE98123.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust.
Identities = 306/349 (87%), Positives = 325/349 (93%)
Query: 1 MALQAAALVPSAFSVPKEGKTSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQRNGV 60
MALQAA+LV SAF PKEGK++A FKDSSLFGVS SEH KADFSS AL+CKREF+Q G
Sbjct: 1 MALQAASLVSSAFVFPKEGKSNAYFKDSSLFGVSLSEHVKADFSSCALKCKREFNQGVGA 60
Query: 61 VRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120
VRAQTM A+PA+D +S + KKTL +G+ I+TGASSGLGLATAKALAETGKWHIIMACR+
Sbjct: 61 VRAQTMVAATPALDRASSESKKTLGQGTCIVTGASSGLGLATAKALAETGKWHIIMACRN 120
Query: 121 FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAK 180
FLKAERAAKSAG+AKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAK
Sbjct: 121 FLKAERAAKSAGIAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAK 180
Query: 181 EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240
EP FTAEGFELSVGTNHLGHFLLSRLLL+D+K SDYPSKRLIIVGSITGNTNTLAGNVPP
Sbjct: 181 EPAFTAEGFELSVGTNHLGHFLLSRLLLEDMKISDYPSKRLIIVGSITGNTNTLAGNVPP 240
Query: 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAF 300
KANLGDLRG +GGLNGLN S+MIDGG FDGAKAYKDSKVCNMLTMQEFHRR HEETGIAF
Sbjct: 241 KANLGDLRGLSGGLNGLNRSAMIDGGVFDGAKAYKDSKVCNMLTMQEFHRRLHEETGIAF 300
Query: 301 ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349
ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKG+VSE EAGKRLAQV
Sbjct: 301 ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGFVSEHEAGKRLAQV 349
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449446951|ref|XP_004141233.1| PREDICTED: protochlorophyllide reductase, chloroplastic-like [Cucumis sativus] gi|449530269|ref|XP_004172118.1| PREDICTED: protochlorophyllide reductase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 625 bits (1613), Expect = e-177, Method: Compositional matrix adjust.
Identities = 304/349 (87%), Positives = 329/349 (94%)
Query: 1 MALQAAALVPSAFSVPKEGKTSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQRNGV 60
MALQAA+LV A S+PKEGK+S KDSSLFG+SFS+H K++FSSS LRCKRE +Q+ G
Sbjct: 1 MALQAASLVSPALSIPKEGKSSVCLKDSSLFGISFSDHLKSEFSSSTLRCKRELNQQIGA 60
Query: 61 VRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120
+RAQT AT SPAV+ ++P GKKTLRKGSV+ITGASSGLGLATAKALAETGKWH+IMACRD
Sbjct: 61 IRAQTTATESPAVNKATPDGKKTLRKGSVVITGASSGLGLATAKALAETGKWHVIMACRD 120
Query: 121 FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAK 180
FLKAERAAKSAG+ KENYT+MHLDLASLDSVRQFVD FR+SGRPLDVLVCNAAVYLPTAK
Sbjct: 121 FLKAERAAKSAGITKENYTVMHLDLASLDSVRQFVDNFRQSGRPLDVLVCNAAVYLPTAK 180
Query: 181 EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240
EPTFTAEGFELSVGTNHLGHFLLSRLLL+DL +SDYPSKRLIIVGSITGNTNTLAGNVPP
Sbjct: 181 EPTFTAEGFELSVGTNHLGHFLLSRLLLEDLNKSDYPSKRLIIVGSITGNTNTLAGNVPP 240
Query: 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAF 300
KANLGDLRG AGGLNGLNSSSMIDGG+FDGAKAYKDSKVCNMLTMQEFH+R+HEETGI F
Sbjct: 241 KANLGDLRGLAGGLNGLNSSSMIDGGEFDGAKAYKDSKVCNMLTMQEFHKRYHEETGITF 300
Query: 301 ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349
ASLYPGCIATTGLFREHIPLFR+LFPPFQK+ITKGYVSEDEAGKRLAQV
Sbjct: 301 ASLYPGCIATTGLFREHIPLFRILFPPFQKFITKGYVSEDEAGKRLAQV 349
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356544016|ref|XP_003540452.1| PREDICTED: protochlorophyllide reductase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 625 bits (1612), Expect = e-177, Method: Compositional matrix adjust.
Identities = 310/349 (88%), Positives = 329/349 (94%)
Query: 1 MALQAAALVPSAFSVPKEGKTSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQRNGV 60
MALQAA+LVP++FSV KEGK+ S KDS+LFG+SFSE KA+FSSSALRCKREF Q+
Sbjct: 1 MALQAASLVPASFSVLKEGKSGVSLKDSTLFGLSFSEPIKANFSSSALRCKREFEQKLCA 60
Query: 61 VRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120
VRA+T+ATASPAV S+P+GKKTLRKGSV+ITGASSGLGLATAKALAETGKWH+IMACRD
Sbjct: 61 VRAETVATASPAVTKSTPEGKKTLRKGSVVITGASSGLGLATAKALAETGKWHVIMACRD 120
Query: 121 FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAK 180
+LKA RAAKSAGMAKENYTIMHLDLASLDSVRQFVD FRRS PLDVLVCNAAVYLPTAK
Sbjct: 121 YLKAARAAKSAGMAKENYTIMHLDLASLDSVRQFVDNFRRSEMPLDVLVCNAAVYLPTAK 180
Query: 181 EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240
EPTFTAEGFELSVGTNHLGHFLLSRLLL+DL++SDYPSKRLIIVGSITGNTNTLAGNVPP
Sbjct: 181 EPTFTAEGFELSVGTNHLGHFLLSRLLLEDLEKSDYPSKRLIIVGSITGNTNTLAGNVPP 240
Query: 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAF 300
KANLGDLRG GGLNGLNSS+MIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGI F
Sbjct: 241 KANLGDLRGLQGGLNGLNSSAMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGITF 300
Query: 301 ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349
ASLYPGCIATTGLFREHIPLFR LFPPFQKYITKGYVSEDEAGKRLAQV
Sbjct: 301 ASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSEDEAGKRLAQV 349
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255587362|ref|XP_002534245.1| short-chain dehydrogenase, putative [Ricinus communis] gi|223525646|gb|EEF28135.1| short-chain dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust.
Identities = 307/345 (88%), Positives = 326/345 (94%)
Query: 5 AAALVPSAFSVPKEGKTSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQRNGVVRAQ 64
A++LV S F V KEGK+SASFKDSSLFGVS S+H KAD SSSA R KRE +QR G VRAQ
Sbjct: 2 ASSLVSSTFVVLKEGKSSASFKDSSLFGVSLSDHLKADHSSSAFRFKREPNQRVGAVRAQ 61
Query: 65 TMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKA 124
TMATASPAV+ ++P+GKKTLRKGSVI+TGASSGLGLATAKALAETGKWHIIMACRDFLK
Sbjct: 62 TMATASPAVNRAAPEGKKTLRKGSVIVTGASSGLGLATAKALAETGKWHIIMACRDFLKT 121
Query: 125 ERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTF 184
ERAAKSAG++KENYTIMHLDLASLDSVRQFVD F+RSGRPLDVLVCNAAVYLPTAKEPTF
Sbjct: 122 ERAAKSAGISKENYTIMHLDLASLDSVRQFVDNFKRSGRPLDVLVCNAAVYLPTAKEPTF 181
Query: 185 TAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244
TAEGFELSVGTNHLGHFLLSRLLL+DL++SDYPSKRLIIVGSITGNTNTLAGNVPPKANL
Sbjct: 182 TAEGFELSVGTNHLGHFLLSRLLLEDLQKSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 241
Query: 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLY 304
GD+RG AGGLNGLNSS+MIDGG+FDGAKAYKDSKVCNML MQEFHRRFHEETGI FASLY
Sbjct: 242 GDMRGLAGGLNGLNSSAMIDGGNFDGAKAYKDSKVCNMLIMQEFHRRFHEETGITFASLY 301
Query: 305 PGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349
PGCIATTGLFREHIPLFR LFPPFQKYITKGYVSEDEAGKRLAQV
Sbjct: 302 PGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSEDEAGKRLAQV 346
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224128374|ref|XP_002329146.1| predicted protein [Populus trichocarpa] gi|222869815|gb|EEF06946.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust.
Identities = 305/349 (87%), Positives = 328/349 (93%)
Query: 1 MALQAAALVPSAFSVPKEGKTSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQRNGV 60
MALQAA+LV SAF VPKEGK+SAS K+SSL GVS S+H KADFSSS L+ KREF+QR
Sbjct: 1 MALQAASLVSSAFVVPKEGKSSASLKESSLLGVSLSDHVKADFSSSTLKWKREFNQRVRT 60
Query: 61 VRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120
VRAQ+MATA+PAV+ +S GKKTLR+G I+TGASSGLGLA AKALAETGKWH+IMACRD
Sbjct: 61 VRAQSMATATPAVNRASSDGKKTLRQGCCIVTGASSGLGLAAAKALAETGKWHVIMACRD 120
Query: 121 FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAK 180
FLKAERAAKSAG+AKEN TIMHLDLASLDSVRQFVDTF+RSGR LDVLVCNAAVYLPTAK
Sbjct: 121 FLKAERAAKSAGIAKENCTIMHLDLASLDSVRQFVDTFKRSGRALDVLVCNAAVYLPTAK 180
Query: 181 EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240
EPTFTAEGFELSVGTNHLGHFLLSRLLL+D+K+SDYPSKRLIIVGSITGNTNTLAGNVPP
Sbjct: 181 EPTFTAEGFELSVGTNHLGHFLLSRLLLEDMKKSDYPSKRLIIVGSITGNTNTLAGNVPP 240
Query: 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAF 300
KANLGDLRG AGGLNGLNSS+MIDGG+FDGAKAYKDSKVCNMLTMQEFHRRFHEETGI F
Sbjct: 241 KANLGDLRGLAGGLNGLNSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRFHEETGITF 300
Query: 301 ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349
ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKG+VSE++AGKRLAQV
Sbjct: 301 ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGFVSEEDAGKRLAQV 349
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|10720220|sp|Q41249.1|PORA_CUCSA RecName: Full=Protochlorophyllide reductase, chloroplastic; Short=PCR; AltName: Full=NADPH-protochlorophyllide oxidoreductase; Short=POR; Flags: Precursor gi|2244614|dbj|BAA21089.1| NADPH-protochlorophyllide oxidoreductase [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 613 bits (1582), Expect = e-173, Method: Compositional matrix adjust.
Identities = 300/349 (85%), Positives = 326/349 (93%), Gaps = 1/349 (0%)
Query: 1 MALQAAALVPSAFSVPKEGKTSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQRNGV 60
MALQAA+LV A S+PKEGK+S KDSSLFG+SFS+H K++FSSS LRCKRE +Q+ G
Sbjct: 1 MALQAASLVSPALSIPKEGKSSVCLKDSSLFGISFSDHLKSEFSSSTLRCKRELNQQIGA 60
Query: 61 VRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120
+RAQT AT SPAV+ ++P GKKTLRKGSV+ITGASSGLGLATAKALAETGKWH+IMACRD
Sbjct: 61 IRAQTTATESPAVNKATPDGKKTLRKGSVVITGASSGLGLATAKALAETGKWHVIMACRD 120
Query: 121 FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAK 180
FLKAERAAKSAG+ KENYT+MHLDLASLDSVRQFVD FR+SGRPLDVLVCNAAVYLPTAK
Sbjct: 121 FLKAERAAKSAGITKENYTVMHLDLASLDSVRQFVDNFRQSGRPLDVLVCNAAVYLPTAK 180
Query: 181 EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240
EPTFTAEGFELSVGTNHLGHFLLSRLLL+DL +S YPSKRLIIVGSITGNTNTLAGNVPP
Sbjct: 181 EPTFTAEGFELSVGTNHLGHFLLSRLLLEDLNKSSYPSKRLIIVGSITGNTNTLAGNVPP 240
Query: 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAF 300
KANLGDLRG AGGLNGL SSMIDGG+FDGAKAYKDSKVCNMLTMQEFH+R+HEETGI F
Sbjct: 241 KANLGDLRGLAGGLNGLK-SSMIDGGEFDGAKAYKDSKVCNMLTMQEFHKRYHEETGITF 299
Query: 301 ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349
ASLYPGCIATTGLFREHIPLFR+LFPPFQK+IT+GYVSEDEAGKRLAQV
Sbjct: 300 ASLYPGCIATTGLFREHIPLFRILFPPFQKFITQGYVSEDEAGKRLAQV 348
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359493870|ref|XP_002284769.2| PREDICTED: protochlorophyllide reductase, chloroplastic-like [Vitis vinifera] gi|302143044|emb|CBI20339.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust.
Identities = 303/349 (86%), Positives = 329/349 (94%), Gaps = 3/349 (0%)
Query: 1 MALQAAALVPSAFSVPKEGKTSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQRNGV 60
MA+QAAALVPSAFS+PKEGK SASFK+S LFGVS S+H KADFSSSALR KR+ S G
Sbjct: 1 MAMQAAALVPSAFSIPKEGKGSASFKESGLFGVSLSDHVKADFSSSALRNKRKPSV--GA 58
Query: 61 VRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120
+RAQT AT +PA+ ++P+GKKTLRKG+V+ITGASSGLGLAT KALAETGKWHIIMACRD
Sbjct: 59 IRAQTAAT-TPAITRATPEGKKTLRKGTVVITGASSGLGLATTKALAETGKWHIIMACRD 117
Query: 121 FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAK 180
FLKAERAA+SAG++KENYT+MHLDLASLDSVRQFVD F+RS RPLDVLVCNAAVYLPTAK
Sbjct: 118 FLKAERAARSAGLSKENYTVMHLDLASLDSVRQFVDNFKRSERPLDVLVCNAAVYLPTAK 177
Query: 181 EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240
EPTFTA+GFELSVGTNHLGHFLL+RLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP
Sbjct: 178 EPTFTADGFELSVGTNHLGHFLLARLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 237
Query: 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAF 300
KANLGDLRG AGGLNGLNSS+MIDGG FDGAKAYKDSKVCNMLTMQEFHRR+HE+TGI F
Sbjct: 238 KANLGDLRGMAGGLNGLNSSAMIDGGAFDGAKAYKDSKVCNMLTMQEFHRRYHEDTGITF 297
Query: 301 ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349
ASLYPGCIATTGLFREHIPLFRLLFPPFQK+ITKGYVSE+E+GKRLAQV
Sbjct: 298 ASLYPGCIATTGLFREHIPLFRLLFPPFQKFITKGYVSEEESGKRLAQV 346
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297796287|ref|XP_002866028.1| hypothetical protein ARALYDRAFT_495501 [Arabidopsis lyrata subsp. lyrata] gi|297311863|gb|EFH42287.1| hypothetical protein ARALYDRAFT_495501 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust.
Identities = 294/354 (83%), Positives = 318/354 (89%), Gaps = 5/354 (1%)
Query: 1 MALQAAALVPSAFSVPKEGKTSASFKDSS---LFGVSFSEHAKADFSSSALRCKREFSQR 57
MALQAA+LV SAFSVPK+GK +AS LFGVS SEH+KADF SS+LRCKRE S R
Sbjct: 1 MALQAASLVSSAFSVPKDGKLNASSSSFKESSLFGVSLSEHSKADFVSSSLRCKREQSLR 60
Query: 58 N--GVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHII 115
N ++RAQ +AT++P+V SS KKTLRKG+V++TGASSGLGLATAKALAETGKWH+I
Sbjct: 61 NNKAIIRAQAIATSTPSVTKSSLDRKKTLRKGNVVVTGASSGLGLATAKALAETGKWHVI 120
Query: 116 MACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVY 175
MACRDFLKAERAA+SAGM K++YT+MHLDLASLDSVRQFVD FRR+ PLDVLVCNAAVY
Sbjct: 121 MACRDFLKAERAAQSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRAEMPLDVLVCNAAVY 180
Query: 176 LPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLA 235
PTA +PTFTAEGFELSVG NHLGHFLLSRLL+DDLK SDYPSKRLIIVGSITGNTNTLA
Sbjct: 181 QPTANQPTFTAEGFELSVGINHLGHFLLSRLLIDDLKNSDYPSKRLIIVGSITGNTNTLA 240
Query: 236 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEE 295
GNVPPKANLGDLRG AGGLNGLNSS+MIDGGDF GAKAYKDSKVCNMLTMQEFHRRFHE+
Sbjct: 241 GNVPPKANLGDLRGLAGGLNGLNSSAMIDGGDFVGAKAYKDSKVCNMLTMQEFHRRFHED 300
Query: 296 TGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349
TGI FASLYPGCIATTGLFREHIPLFR LFPPFQKYITKGYVSE EAGKRLAQV
Sbjct: 301 TGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSETEAGKRLAQV 354
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356517168|ref|XP_003527261.1| PREDICTED: protochlorophyllide reductase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust.
Identities = 292/349 (83%), Positives = 325/349 (93%)
Query: 1 MALQAAALVPSAFSVPKEGKTSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQRNGV 60
MALQAA+LV ++FS+ KEGK+ S +D+++FGVS S+ K+DFSS + CKREF Q+ G
Sbjct: 1 MALQAASLVSASFSIAKEGKSGVSLRDTTMFGVSLSDTLKSDFSSPSSTCKREFQQKFGP 60
Query: 61 VRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120
+R Q++AT +P V +SP+GKKTLRKGSVIITGASSGLGLATAKALAETGKWH+IMACRD
Sbjct: 61 LRVQSVATTTPGVTKASPEGKKTLRKGSVIITGASSGLGLATAKALAETGKWHVIMACRD 120
Query: 121 FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAK 180
FLKAERAAKSAG+AKENYTIMHLDLASLDSVRQFVD FR+SGRPLDVLVCNAAVYLPTA+
Sbjct: 121 FLKAERAAKSAGIAKENYTIMHLDLASLDSVRQFVDNFRQSGRPLDVLVCNAAVYLPTAR 180
Query: 181 EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240
EPT+TA+GFELSVGTNHLGHFLLSRLLLDDL +SDYPSKRLIIVGSITGNTNTLAGNVPP
Sbjct: 181 EPTYTADGFELSVGTNHLGHFLLSRLLLDDLNKSDYPSKRLIIVGSITGNTNTLAGNVPP 240
Query: 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAF 300
KANLGD+RG AGGLNGLN+S+MIDGG FDGAKAYKDSKVCNMLTMQEFHRR+H+ETGI F
Sbjct: 241 KANLGDMRGLAGGLNGLNTSAMIDGGSFDGAKAYKDSKVCNMLTMQEFHRRYHDETGITF 300
Query: 301 ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349
ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKG+VSEDE+GKRLAQV
Sbjct: 301 ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGFVSEDESGKRLAQV 349
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15239574|ref|NP_200230.1| protochlorophyllide reductase A [Arabidopsis thaliana] gi|26454645|sp|Q42536.2|PORA_ARATH RecName: Full=Protochlorophyllide reductase A, chloroplastic; Short=PCR A; AltName: Full=NADPH-protochlorophyllide oxidoreductase A; Short=POR A; Flags: Precursor gi|10178168|dbj|BAB11581.1| NADPH:protochlorophyllide oxidoreductase A [Arabidopsis thaliana] gi|28392935|gb|AAO41903.1| putative NADPH:protochlorophyllide oxidoreductase A [Arabidopsis thaliana] gi|28827538|gb|AAO50613.1| putative NADPH:protochlorophyllide oxidoreductase A [Arabidopsis thaliana] gi|332009081|gb|AED96464.1| protochlorophyllide reductase A [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust.
Identities = 293/355 (82%), Positives = 317/355 (89%), Gaps = 6/355 (1%)
Query: 1 MALQAAALVPSAFSVPKEGKTSASFKDSS----LFGVSFSEHAKADFSSSALRCKREFSQ 56
MALQAA+LV SAFSV K+GK +AS S LFGVS SE +KADF SS+LRCKRE S
Sbjct: 1 MALQAASLVSSAFSVRKDGKLNASASSSFKESSLFGVSLSEQSKADFVSSSLRCKREQSL 60
Query: 57 RN--GVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHI 114
RN ++RAQ +AT++P+V SS KKTLRKG+V++TGASSGLGLATAKALAETGKWH+
Sbjct: 61 RNNKAIIRAQAIATSTPSVTKSSLDRKKTLRKGNVVVTGASSGLGLATAKALAETGKWHV 120
Query: 115 IMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAV 174
IMACRDFLKAERAA+SAGM K++YT+MHLDLASLDSVRQFVD FRR+ PLDVLVCNAAV
Sbjct: 121 IMACRDFLKAERAAQSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRAEMPLDVLVCNAAV 180
Query: 175 YLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTL 234
Y PTA +PTFTAEGFELSVG NHLGHFLLSRLL+DDLK SDYPSKRLIIVGSITGNTNTL
Sbjct: 181 YQPTANQPTFTAEGFELSVGINHLGHFLLSRLLIDDLKNSDYPSKRLIIVGSITGNTNTL 240
Query: 235 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE 294
AGNVPPKANLGDLRG AGGLNGLNSS+MIDGGDF GAKAYKDSKVCNMLTMQEFHRRFHE
Sbjct: 241 AGNVPPKANLGDLRGLAGGLNGLNSSAMIDGGDFVGAKAYKDSKVCNMLTMQEFHRRFHE 300
Query: 295 ETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349
+TGI FASLYPGCIATTGLFREHIPLFR LFPPFQKYITKGYVSE EAGKRLAQV
Sbjct: 301 DTGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSESEAGKRLAQV 355
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 350 | ||||||
| TAIR|locus:2153438 | 405 | PORA "protochlorophyllide oxid | 0.997 | 0.861 | 0.808 | 1.6e-148 | |
| TAIR|locus:2124044 | 401 | PORB "protochlorophyllide oxid | 0.994 | 0.867 | 0.795 | 9.3e-146 | |
| TAIR|locus:2020738 | 401 | POR C "protochlorophyllide oxi | 0.991 | 0.865 | 0.736 | 8.5e-136 | |
| ZFIN|ZDB-GENE-030131-6605 | 334 | rdh14b "retinol dehydrogenase | 0.388 | 0.407 | 0.439 | 1.5e-26 | |
| ZFIN|ZDB-GENE-050522-387 | 298 | zgc:112332 "zgc:112332" [Danio | 0.391 | 0.459 | 0.367 | 2.8e-24 | |
| ZFIN|ZDB-GENE-041010-124 | 286 | rdh14a "retinol dehydrogenase | 0.388 | 0.475 | 0.405 | 2.9e-24 | |
| ZFIN|ZDB-GENE-030131-4716 | 331 | wu:fd55e03 "wu:fd55e03" [Danio | 0.405 | 0.429 | 0.394 | 5.5e-24 | |
| ZFIN|ZDB-GENE-060825-39 | 336 | zgc:153441 "zgc:153441" [Danio | 0.385 | 0.401 | 0.419 | 7.7e-24 | |
| FB|FBgn0033205 | 330 | CG2064 [Drosophila melanogaste | 0.465 | 0.493 | 0.372 | 1.6e-23 | |
| ZFIN|ZDB-GENE-040801-48 | 291 | rdh12l "retinol dehydrogenase | 0.4 | 0.481 | 0.373 | 1.7e-23 |
| TAIR|locus:2153438 PORA "protochlorophyllide oxidoreductase A" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1450 (515.5 bits), Expect = 1.6e-148, P = 1.6e-148
Identities = 287/355 (80%), Positives = 311/355 (87%)
Query: 1 MALQAAALVPSAFSVPKEGK----TSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQ 56
MALQAA+LV SAFSV K+GK S+SFK+SSLFGVS SE +KADF SS+LRCKRE S
Sbjct: 1 MALQAASLVSSAFSVRKDGKLNASASSSFKESSLFGVSLSEQSKADFVSSSLRCKREQSL 60
Query: 57 RNG--VVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHI 114
RN ++RAQ +AT++P+V SS KKTLRKG+V++TGASSGLGLATAKALAETGKWH+
Sbjct: 61 RNNKAIIRAQAIATSTPSVTKSSLDRKKTLRKGNVVVTGASSGLGLATAKALAETGKWHV 120
Query: 115 IMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAV 174
IMACRDFLKAERAA+SAGM K++YT+MHLDLASLDSVRQFVD FRR+ PLDVLVCNAAV
Sbjct: 121 IMACRDFLKAERAAQSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRAEMPLDVLVCNAAV 180
Query: 175 YLPTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQSDYPSKRLIIVGSITGNTNTL 234
Y PTA +PTFTAEGFELSVG NHLGHF K SDYPSKRLIIVGSITGNTNTL
Sbjct: 181 YQPTANQPTFTAEGFELSVGINHLGHFLLSRLLIDDLKNSDYPSKRLIIVGSITGNTNTL 240
Query: 235 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE 294
AGNVPPKANLGDLRG AGGLNGLNSS+MIDGGDF GAKAYKDSKVCNMLTMQEFHRRFHE
Sbjct: 241 AGNVPPKANLGDLRGLAGGLNGLNSSAMIDGGDFVGAKAYKDSKVCNMLTMQEFHRRFHE 300
Query: 295 ETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349
+TGI FASLYPGCIATTGLFREHIPLFR LFPPFQKYITKGYVSE EAGKRLAQV
Sbjct: 301 DTGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSESEAGKRLAQV 355
|
|
| TAIR|locus:2124044 PORB "protochlorophyllide oxidoreductase B" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1424 (506.3 bits), Expect = 9.3e-146, P = 9.3e-146
Identities = 280/352 (79%), Positives = 307/352 (87%)
Query: 1 MALQAAALVPSAFSVPKEGK---TSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQR 57
MALQAA+LV SAFSV K+ K +S+SFKDSSLFG S ++ K++ SS+LR KRE S R
Sbjct: 1 MALQAASLVSSAFSVRKDAKLNASSSSFKDSSLFGASITDQIKSEHGSSSLRFKREQSLR 60
Query: 58 NGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMA 117
N +RAQT AT+SP V S GKKTLRKG+V++TGASSGLGLATAKALAETGKW++IMA
Sbjct: 61 NLAIRAQTAATSSPTV-TKSVDGKKTLRKGNVVVTGASSGLGLATAKALAETGKWNVIMA 119
Query: 118 CRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLP 177
CRDFLKAERAAKS GM K++YT+MHLDLASLDSVRQFVD FRR+ PLDVLVCNAAVY P
Sbjct: 120 CRDFLKAERAAKSVGMPKDSYTVMHLDLASLDSVRQFVDNFRRTETPLDVLVCNAAVYFP 179
Query: 178 TAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQSDYPSKRLIIVGSITGNTNTLAGN 237
TAKEPT++AEGFELSV TNHLGHF K+SDYPSKRLIIVGSITGNTNTLAGN
Sbjct: 180 TAKEPTYSAEGFELSVATNHLGHFLLARLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGN 239
Query: 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETG 297
VPPKANLGDLRG AGGLNGLNSS+MIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETG
Sbjct: 240 VPPKANLGDLRGLAGGLNGLNSSAMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETG 299
Query: 298 IAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349
+ FASLYPGCIA+TGLFREHIPLFR LFPPFQKYITKGYVSE E+GKRLAQV
Sbjct: 300 VTFASLYPGCIASTGLFREHIPLFRALFPPFQKYITKGYVSETESGKRLAQV 351
|
|
| TAIR|locus:2020738 POR C "protochlorophyllide oxidoreductase C" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1330 (473.2 bits), Expect = 8.5e-136, P = 8.5e-136
Identities = 260/353 (73%), Positives = 302/353 (85%)
Query: 1 MALQAA-ALVPSAFSVPKEGKTSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQR-- 57
MALQAA +L+PS S+ KEGK +AS K+++ G SFS H +A+ S+ L K + Q+
Sbjct: 1 MALQAAYSLLPSTISIQKEGKFNASLKETTFTGSSFSNHLRAEKISTLLTIKEQRRQKPR 60
Query: 58 -NGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIM 116
+ +RAQT+ TA+P + +SP+ KKT RKG+ +ITGASSGLGLATAKALA+TGKWH+IM
Sbjct: 61 FSTGIRAQTV-TATPPANEASPEQKKTERKGTAVITGASSGLGLATAKALADTGKWHVIM 119
Query: 117 ACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYL 176
ACR+FLKAE+AA+S GM+KE+YT+MHLDLASL+SV+QFV+ FRR+ +PLDVLVCNAAVY
Sbjct: 120 ACRNFLKAEKAARSVGMSKEDYTVMHLDLASLESVKQFVENFRRTEQPLDVLVCNAAVYQ 179
Query: 177 PTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQSDYPSKRLIIVGSITGNTNTLAG 236
PTAKEP+FTAEGFE+SVGTNHLGHF K+SDYPSKR+IIVGSITGNTNTLAG
Sbjct: 180 PTAKEPSFTAEGFEISVGTNHLGHFLLSRLLLDDLKKSDYPSKRMIIVGSITGNTNTLAG 239
Query: 237 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEET 296
NVPPKANLGDLRG A GLNG NSS MIDGG+FDGAKAYKDSKVCNMLTMQE HRR+HEET
Sbjct: 240 NVPPKANLGDLRGLASGLNGQNSS-MIDGGEFDGAKAYKDSKVCNMLTMQELHRRYHEET 298
Query: 297 GIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349
G+ FASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSE+EAGKRLAQV
Sbjct: 299 GVTFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQV 351
|
|
| ZFIN|ZDB-GENE-030131-6605 rdh14b "retinol dehydrogenase 14b (all-trans/9-cis/11-cis)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 251 (93.4 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 65/148 (43%), Positives = 88/148 (59%)
Query: 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS----AGMAKENYT 139
+R +VI+TGA+ G+G ATA L + + +IMACRD +AE AA+ AG ++
Sbjct: 50 MRGKTVIVTGANCGIGKATAAELLKL-QARVIMACRDRQRAEDAARDIQNQAGASQGEIV 108
Query: 140 IMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVY-LPTAKEPTFTAEGFELSVGTNHL 198
I HLDLASL SVR+F + R +DVL+ NA +Y P +K T EGFE+ +G NHL
Sbjct: 109 IKHLDLASLQSVRRFCEEVIREEPRIDVLINNAGLYQCPYSK----TEEGFEMQLGVNHL 164
Query: 199 GHFXXXXXXXXXXKQSDYPSKRLIIVGS 226
GHF KQS PS R+++V S
Sbjct: 165 GHFLLTNLLLDLLKQSS-PS-RVVVVSS 190
|
|
| ZFIN|ZDB-GENE-050522-387 zgc:112332 "zgc:112332" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 224 (83.9 bits), Expect = 2.8e-24, Sum P(2) = 2.8e-24
Identities = 54/147 (36%), Positives = 83/147 (56%)
Query: 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA--GMAKENYTIM 141
L + +VIITGA++G+G TA+ LA G ++MACRD KAE A + +N +
Sbjct: 18 LDEKTVIITGANTGIGKETARDLARRGA-RVVMACRDLEKAEAARRELMDNSGNQNIVVK 76
Query: 142 HLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGH 200
LDLA S++ F + + + +++L+ NA + + P +K TA+GFE+ G NHLGH
Sbjct: 77 KLDLADTKSIKAFAELINKEEKQVNILINNAGIMMCPYSK----TADGFEMQFGVNHLGH 132
Query: 201 FXXXXXXXXXXKQSDYPSKRLIIVGSI 227
F K+S PS R++ V S+
Sbjct: 133 FLLIYLLLDLLKKST-PS-RIVNVASV 157
|
|
| ZFIN|ZDB-GENE-041010-124 rdh14a "retinol dehydrogenase 14a (all-trans/9-cis/11-cis)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 211 (79.3 bits), Expect = 2.9e-24, Sum P(2) = 2.9e-24
Identities = 60/148 (40%), Positives = 81/148 (54%)
Query: 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS----AGMAKENYT 139
LR +VI+TGA+SG+G AT L + +IMACRD +AE+AA+ AG +
Sbjct: 2 LRGKTVIVTGANSGIGKATTTELLRR-QARVIMACRDRERAEKAAQEIKQEAGPEQGELV 60
Query: 140 IMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVY-LPTAKEPTFTAEGFELSVGTNHL 198
I LDLASL SVR F + + +D+L+ NA +Y P K + +GFE+ NHL
Sbjct: 61 IKLLDLASLKSVRVFCEGIIKEEPRIDILINNAGIYQCPYTK----SEDGFEMQFAVNHL 116
Query: 199 GHFXXXXXXXXXXKQSDYPSKRLIIVGS 226
GHF K S PS R+I+V S
Sbjct: 117 GHFLLTNLLLDLLKCSA-PS-RIIVVSS 142
|
|
| ZFIN|ZDB-GENE-030131-4716 wu:fd55e03 "wu:fd55e03" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 233 (87.1 bits), Expect = 5.5e-24, Sum P(2) = 5.5e-24
Identities = 60/152 (39%), Positives = 87/152 (57%)
Query: 79 QGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM--AKE 136
+ K L +V+ITG ++G+G TA +A+ G +I+ACRD +A +AA+ E
Sbjct: 46 RSKARLNGKTVLITGGNTGIGKETAVDMAKRGA-RVILACRDMSRAHKAAEEIRKRSGNE 104
Query: 137 NYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTF-TAEGFELSVGT 195
N T+ LDLASL SVR V ++S + LD+L+ NA V + P + T EGFE+ +G
Sbjct: 105 NVTVKMLDLASLQSVRDLVKDVQQSEQRLDILINNAGVMMC----PKWHTDEGFEMQIGV 160
Query: 196 NHLGHFXXXXXXXXXXKQSDYPSKRLIIVGSI 227
NHLGHF K+S PS R++ V S+
Sbjct: 161 NHLGHFLLTNLLLDMLKKSA-PS-RIVNVASV 190
|
|
| ZFIN|ZDB-GENE-060825-39 zgc:153441 "zgc:153441" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 233 (87.1 bits), Expect = 7.7e-24, Sum P(2) = 7.7e-24
Identities = 60/143 (41%), Positives = 83/143 (58%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIM--HLDL 145
+V+ITGA++G+G TA+ +A G ++MACRD KAE+AA + N I+ HL+L
Sbjct: 54 TVVITGANTGIGKETARDMARRGA-RVVMACRDLSKAEKAAAEIRRSTGNADIVVRHLNL 112
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFXXXX 205
ASL SVRQF + + LD+L+ NA V + K + T +G+E NHLGHF
Sbjct: 113 ASLHSVRQFAHQYTATEDRLDILINNAGVMM-CPK--SLTEDGYETQFAVNHLGHFLLTV 169
Query: 206 XXXXXXKQSDYPSKRLIIVGSIT 228
K+S PS R+I V SIT
Sbjct: 170 LLLDMLKKSS-PS-RVINVSSIT 190
|
|
| FB|FBgn0033205 CG2064 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 232 (86.7 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 66/177 (37%), Positives = 95/177 (53%)
Query: 81 KKTLRKGSV-IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYT 139
K T G V I+TGA++G+G TA +A G + +ACRD + E+A K N
Sbjct: 37 KDTDETGKVFIVTGANTGIGKETALEIARRGGT-VYLACRDMNRCEKARKDIIKETNNQN 95
Query: 140 IM--HLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNH 197
I LDL+SLDS+R+FVD F++ L VL+ NA V + K T T +G+EL +G NH
Sbjct: 96 IFSRELDLSSLDSIRKFVDGFKKEQPKLHVLINNAGV-MRCPK--TLTKDGYELQLGVNH 152
Query: 198 LGHFXXXXXXXXXXKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGL 254
+GHF K S PS R+++V S+ ++ NV A+L + + GL
Sbjct: 153 IGHFLLTNLLLDVLKNSA-PS-RIVVVSSLAHARGSI--NV---ADLNSEKSYDEGL 202
|
|
| ZFIN|ZDB-GENE-040801-48 rdh12l "retinol dehydrogenase 12, like" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 213 (80.0 bits), Expect = 1.7e-23, Sum P(2) = 1.7e-23
Identities = 56/150 (37%), Positives = 82/150 (54%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA--GMAKENYTIMHLDL 145
+V+ITGA++G+G TA LA+ G IIMACRD KAE A K ++ I LDL
Sbjct: 15 TVLITGANTGIGKETAIDLAKRGA-RIIMACRDMEKAEAALKEVKDSSGNQDVFISSLDL 73
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFXXX 204
+ S+R F + + + +++L+ NA V + P K TA+GFE+ +G NH+GHF
Sbjct: 74 SDSKSIRGFAEKINKEEKQVNILINNAGVMVCPYGK----TADGFEMQIGVNHMGHFLLT 129
Query: 205 XXXXXXXKQSDYPSKRLIIVGSITGNTNTL 234
K+S P+ R+I V S T+
Sbjct: 130 YLLLDLIKRSA-PA-RIINVSSTAHQWGTI 157
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q42850 | PORB_HORVU | 1, ., 3, ., 1, ., 3, 3 | 0.7371 | 0.9828 | 0.8708 | N/A | no |
| Q39617 | POR_CHLRE | 1, ., 3, ., 1, ., 3, 3 | 0.6149 | 0.9714 | 0.8564 | N/A | no |
| Q41578 | PORA_WHEAT | 1, ., 3, ., 1, ., 3, 3 | 0.7025 | 0.9542 | 0.8608 | N/A | no |
| P15904 | POR_AVESA | 1, ., 3, ., 1, ., 3, 3 | 0.8167 | 0.7457 | 0.8338 | N/A | no |
| Q7XKF3 | PORA_ORYSJ | 1, ., 3, ., 1, ., 3, 3 | 0.7236 | 0.9571 | 0.8656 | yes | no |
| Q01289 | POR_PEA | 1, ., 3, ., 1, ., 3, 3 | 0.8342 | 0.9942 | 0.8721 | N/A | no |
| P21218 | PORB_ARATH | 1, ., 3, ., 1, ., 3, 3 | 0.8068 | 0.9942 | 0.8678 | no | no |
| Q42536 | PORA_ARATH | 1, ., 3, ., 1, ., 3, 3 | 0.8253 | 0.9971 | 0.8617 | yes | no |
| Q9SDT1 | POR_DAUCA | 1, ., 3, ., 1, ., 3, 3 | 0.8233 | 0.9885 | 0.8693 | N/A | no |
| O48741 | PORC_ARATH | 1, ., 3, ., 1, ., 3, 3 | 0.7648 | 0.9914 | 0.8653 | no | no |
| Q8W3D9 | PORB_ORYSJ | 1, ., 3, ., 1, ., 3, 3 | 0.7308 | 0.9828 | 0.8557 | yes | no |
| Q41249 | PORA_CUCSA | 1, ., 3, ., 1, ., 3, 3 | 0.8595 | 0.9942 | 0.8743 | N/A | no |
| P13653 | PORA_HORVU | 1, ., 3, ., 1, ., 3, 3 | 0.7053 | 0.9542 | 0.8608 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.1 | LOW CONFIDENCE prediction! |
| 3rd Layer | 1.3.1 | 0.983 |
| 3rd Layer | 1.3.1.33 | 0.979 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | eugene3.00110948 | protochlorophyllide reductase (EC-1.3.1.33) (399 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | estExt_Genewise1_v1.C_LG_XVI1018 | magnesium protoporphyrin IX monomethyl ester (oxidative) cyclase (EC-1.14.13.81) (405 aa) | • | • | • | 0.907 | |||||
 | estExt_fgenesh4_pg.C_LG_VI0825 | SubName- Full=Putative uncharacterized protein; (372 aa) | • | • | • | 0.904 | |||||
 | estExt_Genewise1_v1.C_LG_XVI3731 | chlorophyll synthetase (EC-2.5.1.62) (329 aa) | • | • | • | 0.903 | |||||
 | estExt_Genewise1_v1.C_LG_V5276 | hypothetical protein (531 aa) | • | • | 0.903 | ||||||
 | gw1.X.5768.1 | chlorophyllase (EC-3.1.1.14) (304 aa) | • | 0.899 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 350 | |||
| PLN00015 | 308 | PLN00015, PLN00015, protochlorophyllide reductase | 0.0 | |
| TIGR01289 | 314 | TIGR01289, LPOR, light-dependent protochlorophylli | 1e-179 | |
| cd09810 | 311 | cd09810, LPOR_like_SDR_c_like, light-dependent pro | 1e-171 | |
| PRK07453 | 322 | PRK07453, PRK07453, protochlorophyllide oxidoreduc | 1e-152 | |
| cd05327 | 269 | cd05327, retinol-DH_like_SDR_c_like, retinol dehyd | 6e-73 | |
| cd09807 | 274 | cd09807, retinol-DH_like_SDR_c, retinol dehydrogen | 1e-42 | |
| cd09809 | 284 | cd09809, human_WWOX_like_SDR_c-like, human WWOX (W | 3e-37 | |
| PRK06197 | 306 | PRK06197, PRK06197, short chain dehydrogenase; Pro | 8e-36 | |
| PRK06196 | 315 | PRK06196, PRK06196, oxidoreductase; Provisional | 1e-29 | |
| cd05233 | 234 | cd05233, SDR_c, classical (c) SDRs | 3e-26 | |
| PRK05854 | 313 | PRK05854, PRK05854, short chain dehydrogenase; Pro | 3e-24 | |
| cd05324 | 225 | cd05324, carb_red_PTCR-like_SDR_c, Porcine testicu | 2e-21 | |
| COG1028 | 251 | COG1028, FabG, Dehydrogenases with different speci | 3e-21 | |
| cd05325 | 233 | cd05325, carb_red_sniffer_like_SDR_c, carbonyl red | 9e-20 | |
| cd09808 | 255 | cd09808, DHRS-12_like_SDR_c-like, human dehydrogen | 4e-18 | |
| pfam00106 | 167 | pfam00106, adh_short, short chain dehydrogenase | 2e-16 | |
| PRK05653 | 246 | PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) | 2e-16 | |
| cd05374 | 248 | cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxyster | 1e-14 | |
| PRK12826 | 251 | PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-prote | 3e-14 | |
| COG4221 | 246 | COG4221, COG4221, Short-chain alcohol dehydrogenas | 5e-14 | |
| cd05346 | 249 | cd05346, SDR_c5, classical (c) SDR, subgroup 5 | 1e-13 | |
| PRK12829 | 264 | PRK12829, PRK12829, short chain dehydrogenase; Pro | 2e-13 | |
| cd08941 | 290 | cd08941, 3KS_SDR_c, 3-keto steroid reductase, clas | 2e-12 | |
| PRK06179 | 270 | PRK06179, PRK06179, short chain dehydrogenase; Pro | 2e-12 | |
| cd08939 | 239 | cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine | 2e-12 | |
| cd08932 | 223 | cd08932, HetN_like_SDR_c, HetN oxidoreductase-like | 8e-12 | |
| PRK12825 | 249 | PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) | 8e-12 | |
| cd09806 | 258 | cd09806, type1_17beta-HSD-like_SDR_c, human estrog | 9e-12 | |
| PRK07326 | 237 | PRK07326, PRK07326, short chain dehydrogenase; Pro | 9e-12 | |
| cd05333 | 240 | cd05333, BKR_SDR_c, beta-Keto acyl carrier protein | 2e-11 | |
| TIGR01963 | 255 | TIGR01963, PHB_DH, 3-hydroxybutyrate dehydrogenase | 3e-11 | |
| PRK08324 | 681 | PRK08324, PRK08324, short chain dehydrogenase; Val | 3e-11 | |
| cd05329 | 251 | cd05329, TR_SDR_c, tropinone reductase-I and II (T | 4e-11 | |
| cd05370 | 228 | cd05370, SDR_c2, classical (c) SDR, subgroup 2 | 6e-11 | |
| PRK07523 | 255 | PRK07523, PRK07523, gluconate 5-dehydrogenase; Pro | 4e-10 | |
| cd09761 | 242 | cd09761, A3DFK9-like_SDR_c, Clostridium thermocell | 5e-10 | |
| PRK06914 | 280 | PRK06914, PRK06914, short chain dehydrogenase; Pro | 6e-10 | |
| PRK07825 | 273 | PRK07825, PRK07825, short chain dehydrogenase; Pro | 9e-10 | |
| cd05337 | 255 | cd05337, BKR_1_SDR_c, putative beta-ketoacyl acyl | 2e-09 | |
| PRK12429 | 258 | PRK12429, PRK12429, 3-hydroxybutyrate dehydrogenas | 2e-09 | |
| cd05369 | 249 | cd05369, TER_DECR_SDR_a, Trans-2-enoyl-CoA reducta | 2e-09 | |
| cd08929 | 226 | cd08929, SDR_c4, classical (c) SDR, subgroup 4 | 2e-09 | |
| COG0300 | 265 | COG0300, DltE, Short-chain dehydrogenases of vario | 3e-09 | |
| cd05332 | 257 | cd05332, 11beta-HSD1_like_SDR_c, 11beta-hydroxyste | 3e-09 | |
| PRK08589 | 272 | PRK08589, PRK08589, short chain dehydrogenase; Val | 4e-09 | |
| PRK05557 | 248 | PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) | 4e-09 | |
| PRK09072 | 263 | PRK09072, PRK09072, short chain dehydrogenase; Pro | 6e-09 | |
| cd05360 | 233 | cd05360, SDR_c3, classical (c) SDR, subgroup 3 | 6e-09 | |
| PRK07201 | 657 | PRK07201, PRK07201, short chain dehydrogenase; Pro | 7e-09 | |
| PRK05993 | 277 | PRK05993, PRK05993, short chain dehydrogenase; Pro | 9e-09 | |
| cd05347 | 248 | cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogena | 1e-08 | |
| cd08951 | 260 | cd08951, DR_C-13_KR_SDR_c_like, daunorubicin C-13 | 1e-08 | |
| cd05323 | 244 | cd05323, ADH_SDR_c_like, insect type alcohol dehyd | 1e-08 | |
| cd05341 | 247 | cd05341, 3beta-17beta-HSD_like_SDR_c, 3beta17beta | 1e-08 | |
| cd05344 | 253 | cd05344, BKR_like_SDR_like, putative beta-ketoacyl | 2e-08 | |
| PRK12939 | 250 | PRK12939, PRK12939, short chain dehydrogenase; Pro | 3e-08 | |
| PRK05565 | 247 | PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) | 3e-08 | |
| PRK06181 | 263 | PRK06181, PRK06181, short chain dehydrogenase; Pro | 3e-08 | |
| cd05338 | 246 | cd05338, DHRS1_HSDL2-like_SDR_c, human dehydrogena | 3e-08 | |
| COG3967 | 245 | COG3967, DltE, Short-chain dehydrogenase involved | 3e-08 | |
| PRK07454 | 241 | PRK07454, PRK07454, short chain dehydrogenase; Pro | 5e-08 | |
| PRK08177 | 225 | PRK08177, PRK08177, short chain dehydrogenase; Pro | 6e-08 | |
| PRK07063 | 260 | PRK07063, PRK07063, short chain dehydrogenase; Pro | 6e-08 | |
| cd08943 | 250 | cd08943, R1PA_ADH_SDR_c, rhamnulose-1-phosphate al | 7e-08 | |
| TIGR01830 | 239 | TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier | 7e-08 | |
| PRK08219 | 227 | PRK08219, PRK08219, short chain dehydrogenase; Pro | 9e-08 | |
| PRK06500 | 249 | PRK06500, PRK06500, short chain dehydrogenase; Pro | 1e-07 | |
| PRK06484 | 520 | PRK06484, PRK06484, short chain dehydrogenase; Val | 1e-07 | |
| PRK06701 | 290 | PRK06701, PRK06701, short chain dehydrogenase; Pro | 1e-07 | |
| PRK07231 | 251 | PRK07231, fabG, 3-ketoacyl-(acyl-carrier-protein) | 1e-07 | |
| cd05367 | 241 | cd05367, SPR-like_SDR_c, sepiapterin reductase (SP | 1e-07 | |
| PRK12828 | 239 | PRK12828, PRK12828, short chain dehydrogenase; Pro | 1e-07 | |
| PRK12743 | 256 | PRK12743, PRK12743, oxidoreductase; Provisional | 2e-07 | |
| cd05364 | 253 | cd05364, SDR_c11, classical (c) SDR, subgroup 11 | 2e-07 | |
| PRK06125 | 259 | PRK06125, PRK06125, short chain dehydrogenase; Pro | 2e-07 | |
| PRK05866 | 293 | PRK05866, PRK05866, short chain dehydrogenase; Pro | 3e-07 | |
| cd05350 | 239 | cd05350, SDR_c6, classical (c) SDR, subgroup 6 | 3e-07 | |
| cd05371 | 252 | cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydr | 3e-07 | |
| PRK08017 | 256 | PRK08017, PRK08017, oxidoreductase; Provisional | 5e-07 | |
| cd05339 | 243 | cd05339, 17beta-HSDXI-like_SDR_c, human 17-beta-hy | 5e-07 | |
| PRK06841 | 255 | PRK06841, PRK06841, short chain dehydrogenase; Pro | 6e-07 | |
| cd05359 | 242 | cd05359, ChcA_like_SDR_c, 1-cyclohexenylcarbonyl_c | 6e-07 | |
| PRK07677 | 252 | PRK07677, PRK07677, short chain dehydrogenase; Pro | 7e-07 | |
| PRK06182 | 273 | PRK06182, PRK06182, short chain dehydrogenase; Val | 7e-07 | |
| cd05331 | 244 | cd05331, DH-DHB-DH_SDR_c, 2,3 dihydro-2,3 dihydroz | 8e-07 | |
| PRK06953 | 222 | PRK06953, PRK06953, short chain dehydrogenase; Pro | 8e-07 | |
| cd08933 | 261 | cd08933, RDH_SDR_c, retinal dehydrogenase-like, cl | 1e-06 | |
| PRK10538 | 248 | PRK10538, PRK10538, malonic semialdehyde reductase | 1e-06 | |
| PRK06949 | 258 | PRK06949, PRK06949, short chain dehydrogenase; Pro | 1e-06 | |
| PRK08220 | 252 | PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehy | 1e-06 | |
| PRK08213 | 259 | PRK08213, PRK08213, gluconate 5-dehydrogenase; Pro | 1e-06 | |
| TIGR04316 | 250 | TIGR04316, dhbA_paeA, 2,3-dihydro-2,3-dihydroxyben | 1e-06 | |
| PRK06484 | 520 | PRK06484, PRK06484, short chain dehydrogenase; Val | 2e-06 | |
| cd05330 | 257 | cd05330, cyclohexanol_reductase_SDR_c, cyclohexano | 2e-06 | |
| PRK05717 | 255 | PRK05717, PRK05717, oxidoreductase; Validated | 2e-06 | |
| cd05349 | 246 | cd05349, BKR_2_SDR_c, putative beta-ketoacyl acyl | 2e-06 | |
| PRK09242 | 257 | PRK09242, PRK09242, tropinone reductase; Provision | 2e-06 | |
| PRK07067 | 257 | PRK07067, PRK07067, sorbitol dehydrogenase; Provis | 2e-06 | |
| cd05326 | 249 | cd05326, secoisolariciresinol-DH_like_SDR_c, secoi | 2e-06 | |
| smart00822 | 180 | smart00822, PKS_KR, This enzymatic domain is part | 2e-06 | |
| PRK12827 | 249 | PRK12827, PRK12827, short chain dehydrogenase; Pro | 3e-06 | |
| cd05345 | 248 | cd05345, BKR_3_SDR_c, putative beta-ketoacyl acyl | 4e-06 | |
| pfam08659 | 181 | pfam08659, KR, KR domain | 5e-06 | |
| PRK05855 | 582 | PRK05855, PRK05855, short chain dehydrogenase; Val | 5e-06 | |
| PRK06198 | 260 | PRK06198, PRK06198, short chain dehydrogenase; Pro | 5e-06 | |
| PRK12937 | 245 | PRK12937, PRK12937, short chain dehydrogenase; Pro | 6e-06 | |
| cd05352 | 252 | cd05352, MDH-like_SDR_c, mannitol dehydrogenase (M | 6e-06 | |
| PRK06124 | 256 | PRK06124, PRK06124, gluconate 5-dehydrogenase; Pro | 7e-06 | |
| cd08930 | 250 | cd08930, SDR_c8, classical (c) SDR, subgroup 8 | 7e-06 | |
| PRK07806 | 248 | PRK07806, PRK07806, short chain dehydrogenase; Pro | 8e-06 | |
| cd08940 | 258 | cd08940, HBDH_SDR_c, d-3-hydroxybutyrate dehydroge | 8e-06 | |
| cd05340 | 236 | cd05340, Ycik_SDR_c, Escherichia coli K-12 YCIK-li | 9e-06 | |
| cd05362 | 243 | cd05362, THN_reductase-like_SDR_c, tetrahydroxynap | 1e-05 | |
| PRK06200 | 263 | PRK06200, PRK06200, 2,3-dihydroxy-2,3-dihydropheny | 1e-05 | |
| PRK07109 | 334 | PRK07109, PRK07109, short chain dehydrogenase; Pro | 1e-05 | |
| PRK12384 | 259 | PRK12384, PRK12384, sorbitol-6-phosphate dehydroge | 1e-05 | |
| cd05328 | 250 | cd05328, 3alpha_HSD_SDR_c, alpha hydroxysteroid de | 1e-05 | |
| cd05357 | 234 | cd05357, PR_SDR_c, pteridine reductase (PR), class | 2e-05 | |
| cd05355 | 270 | cd05355, SDR_c1, classical (c) SDR, subgroup 1 | 2e-05 | |
| PRK07041 | 230 | PRK07041, PRK07041, short chain dehydrogenase; Pro | 2e-05 | |
| PRK05867 | 253 | PRK05867, PRK05867, short chain dehydrogenase; Pro | 2e-05 | |
| PRK07774 | 250 | PRK07774, PRK07774, short chain dehydrogenase; Pro | 3e-05 | |
| PRK09135 | 249 | PRK09135, PRK09135, pteridine reductase; Provision | 3e-05 | |
| cd05274 | 375 | cd05274, KR_FAS_SDR_x, ketoreductase (KR) and fatt | 3e-05 | |
| TIGR02632 | 676 | TIGR02632, RhaD_aldol-ADH, rhamnulose-1-phosphate | 3e-05 | |
| PRK08265 | 261 | PRK08265, PRK08265, short chain dehydrogenase; Pro | 4e-05 | |
| PRK06947 | 248 | PRK06947, PRK06947, glucose-1-dehydrogenase; Provi | 4e-05 | |
| PRK08261 | 450 | PRK08261, fabG, 3-ketoacyl-(acyl-carrier-protein) | 4e-05 | |
| PRK08226 | 263 | PRK08226, PRK08226, short chain dehydrogenase; Pro | 4e-05 | |
| PRK09730 | 247 | PRK09730, PRK09730, putative NAD(P)-binding oxidor | 4e-05 | |
| PRK07814 | 263 | PRK07814, PRK07814, short chain dehydrogenase; Pro | 5e-05 | |
| PRK06924 | 251 | PRK06924, PRK06924, short chain dehydrogenase; Pro | 5e-05 | |
| cd08935 | 271 | cd08935, mannonate_red_SDR_c, putative D-mannonate | 6e-05 | |
| cd05358 | 253 | cd05358, GlcDH_SDR_c, glucose 1 dehydrogenase (Glc | 6e-05 | |
| cd05348 | 257 | cd05348, BphB-like_SDR_c, cis-biphenyl-2,3-dihydro | 6e-05 | |
| PRK07060 | 245 | PRK07060, PRK07060, short chain dehydrogenase; Pro | 7e-05 | |
| PRK08278 | 273 | PRK08278, PRK08278, short chain dehydrogenase; Pro | 8e-05 | |
| cd05351 | 244 | cd05351, XR_like_SDR_c, xylulose reductase-like, c | 9e-05 | |
| PRK07097 | 265 | PRK07097, PRK07097, gluconate 5-dehydrogenase; Pro | 9e-05 | |
| cd05343 | 250 | cd05343, Mgc4172-like_SDR_c, human Mgc4172-like, c | 9e-05 | |
| cd08942 | 250 | cd08942, RhlG_SDR_c, RhlG and related beta-ketoacy | 1e-04 | |
| PRK12824 | 245 | PRK12824, PRK12824, acetoacetyl-CoA reductase; Pro | 1e-04 | |
| PRK06138 | 252 | PRK06138, PRK06138, short chain dehydrogenase; Pro | 1e-04 | |
| PRK07666 | 239 | PRK07666, fabG, 3-ketoacyl-(acyl-carrier-protein) | 1e-04 | |
| cd08934 | 243 | cd08934, CAD_SDR_c, clavulanic acid dehydrogenase | 1e-04 | |
| cd11731 | 198 | cd11731, Lin1944_like_SDR_c, Lin1944 and related p | 1e-04 | |
| PRK06171 | 266 | PRK06171, PRK06171, sorbitol-6-phosphate 2-dehydro | 1e-04 | |
| PRK12745 | 256 | PRK12745, PRK12745, 3-ketoacyl-(acyl-carrier-prote | 2e-04 | |
| PRK07074 | 257 | PRK07074, PRK07074, short chain dehydrogenase; Pro | 2e-04 | |
| TIGR01832 | 248 | TIGR01832, kduD, 2-deoxy-D-gluconate 3-dehydrogena | 2e-04 | |
| PRK06123 | 248 | PRK06123, PRK06123, short chain dehydrogenase; Pro | 2e-04 | |
| cd08931 | 227 | cd08931, SDR_c9, classical (c) SDR, subgroup 9 | 3e-04 | |
| cd09805 | 281 | cd09805, type2_17beta_HSD-like_SDR_c, human 17beta | 3e-04 | |
| PRK08936 | 261 | PRK08936, PRK08936, glucose-1-dehydrogenase; Provi | 3e-04 | |
| PRK07775 | 274 | PRK07775, PRK07775, short chain dehydrogenase; Pro | 4e-04 | |
| PRK07576 | 264 | PRK07576, PRK07576, short chain dehydrogenase; Pro | 4e-04 | |
| PRK08643 | 256 | PRK08643, PRK08643, acetoin reductase; Validated | 4e-04 | |
| PRK08628 | 258 | PRK08628, PRK08628, short chain dehydrogenase; Pro | 4e-04 | |
| PRK06935 | 258 | PRK06935, PRK06935, 2-deoxy-D-gluconate 3-dehydrog | 4e-04 | |
| PRK06057 | 255 | PRK06057, PRK06057, short chain dehydrogenase; Pro | 5e-04 | |
| PRK07024 | 257 | PRK07024, PRK07024, short chain dehydrogenase; Pro | 5e-04 | |
| TIGR01829 | 242 | TIGR01829, AcAcCoA_reduct, acetoacetyl-CoA reducta | 5e-04 | |
| PRK06463 | 255 | PRK06463, fabG, 3-ketoacyl-(acyl-carrier-protein) | 6e-04 | |
| PRK13394 | 262 | PRK13394, PRK13394, 3-hydroxybutyrate dehydrogenas | 6e-04 | |
| cd08955 | 376 | cd08955, KR_2_FAS_SDR_x, beta-ketoacyl reductase ( | 8e-04 | |
| PRK05693 | 274 | PRK05693, PRK05693, short chain dehydrogenase; Pro | 9e-04 | |
| PRK07062 | 265 | PRK07062, PRK07062, short chain dehydrogenase; Pro | 0.001 | |
| PRK09186 | 256 | PRK09186, PRK09186, flagellin modification protein | 0.001 | |
| PRK07035 | 252 | PRK07035, PRK07035, short chain dehydrogenase; Pro | 0.001 | |
| cd08945 | 258 | cd08945, PKR_SDR_c, Polyketide ketoreductase, clas | 0.001 | |
| PRK06139 | 330 | PRK06139, PRK06139, short chain dehydrogenase; Pro | 0.002 | |
| cd08953 | 436 | cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup | 0.002 | |
| cd05365 | 242 | cd05365, 7_alpha_HSDH_SDR_c, 7 alpha-hydroxysteroi | 0.002 | |
| cd05354 | 235 | cd05354, SDR_c7, classical (c) SDR, subgroup 7 | 0.002 | |
| PRK08642 | 253 | PRK08642, fabG, 3-ketoacyl-(acyl-carrier-protein) | 0.002 | |
| PRK06180 | 277 | PRK06180, PRK06180, short chain dehydrogenase; Pro | 0.002 | |
| PRK06398 | 258 | PRK06398, PRK06398, aldose dehydrogenase; Validate | 0.003 | |
| PRK07890 | 258 | PRK07890, PRK07890, short chain dehydrogenase; Pro | 0.003 | |
| TIGR03206 | 250 | TIGR03206, benzo_BadH, 2-hydroxycyclohexanecarboxy | 0.003 | |
| cd08944 | 246 | cd08944, SDR_c12, classical (c) SDR, subgroup 12 | 0.003 | |
| PRK08085 | 254 | PRK08085, PRK08085, gluconate 5-dehydrogenase; Pro | 0.003 | |
| COG0451 | 314 | COG0451, WcaG, Nucleoside-diphosphate-sugar epimer | 0.004 | |
| PRK07832 | 272 | PRK07832, PRK07832, short chain dehydrogenase; Pro | 0.004 |
| >gnl|CDD|177654 PLN00015, PLN00015, protochlorophyllide reductase | Back alignment and domain information |
|---|
Score = 586 bits (1512), Expect = 0.0
Identities = 245/260 (94%), Positives = 256/260 (98%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
IITGASSGLGLATAKALAETGKWH++MACRDFLKAERAAKSAGM K++YT+MHLDLASLD
Sbjct: 1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGMPKDSYTVMHLDLASLD 60
Query: 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLD 209
SVRQFVD FRRSGRPLDVLVCNAAVYLPTAKEPTFTA+GFELSVGTNHLGHFLLSRLLLD
Sbjct: 61 SVRQFVDNFRRSGRPLDVLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLD 120
Query: 210 DLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFD 269
DLK+SDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRG AGGLNGLNSS+MIDGG+FD
Sbjct: 121 DLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGLNGLNSSAMIDGGEFD 180
Query: 270 GAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQ 329
GAKAYKDSKVCNMLTMQEFHRR+HEETGI FASLYPGCIATTGLFREHIPLFRLLFPPFQ
Sbjct: 181 GAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRLLFPPFQ 240
Query: 330 KYITKGYVSEDEAGKRLAQV 349
KYITKGYVSE+EAGKRLAQV
Sbjct: 241 KYITKGYVSEEEAGKRLAQV 260
|
Length = 308 |
| >gnl|CDD|200089 TIGR01289, LPOR, light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Score = 499 bits (1286), Expect = e-179
Identities = 213/266 (80%), Positives = 229/266 (86%), Gaps = 2/266 (0%)
Query: 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHL 143
+K +VIITGASSGLGL AKALA TG+WH+IMACRDFLKAE+AAKS GM K++YTIMHL
Sbjct: 1 QQKPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHL 60
Query: 144 DLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLL 203
DL SLDSVRQFV FR SGRPLD LVCNAAVY PTAKEP FTA+GFELSVGTNHLGHFLL
Sbjct: 61 DLGSLDSVRQFVQQFRESGRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLL 120
Query: 204 SRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMI 263
LLLDDLK S KRLIIVGSITGNTNTLAGNVPPKANLGDL G A G +MI
Sbjct: 121 CNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNVPPKANLGDLSGLAAGFKAPI--AMI 178
Query: 264 DGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL 323
DG +F GAKAYKDSKVCNMLT++E HRRFH+ETGI FASLYPGCIA TGLFREH+PLFR
Sbjct: 179 DGKEFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIADTGLFREHVPLFRT 238
Query: 324 LFPPFQKYITKGYVSEDEAGKRLAQV 349
LFPPFQKYITKGYVSE+EAG+RLAQV
Sbjct: 239 LFPPFQKYITKGYVSEEEAGERLAQV 264
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 314 |
| >gnl|CDD|187670 cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs | Back alignment and domain information |
|---|
Score = 477 bits (1229), Expect = e-171
Identities = 203/264 (76%), Positives = 230/264 (87%), Gaps = 2/264 (0%)
Query: 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDL 145
KG+V+ITGASSGLGLA AKALA G+WH++MACRDFLKAE+AA+ GM K++Y+++H DL
Sbjct: 1 KGTVVITGASSGLGLAAAKALARRGEWHVVMACRDFLKAEQAAQEVGMPKDSYSVLHCDL 60
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
ASLDSVRQFVD FRR+GRPLD LVCNAAVYLPTAKEP FTA+GFEL+VG NHLGHFLL+
Sbjct: 61 ASLDSVRQFVDNFRRTGRPLDALVCNAAVYLPTAKEPRFTADGFELTVGVNHLGHFLLTN 120
Query: 206 LLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDG 265
LLL+DL++S+ S R++IVGSIT N NTLAGNVPP+A LGDL G AGGL G N SMIDG
Sbjct: 121 LLLEDLQRSENASPRIVIVGSITHNPNTLAGNVPPRATLGDLEGLAGGLKGFN--SMIDG 178
Query: 266 GDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 325
G+F+GAKAYKDSKVCNMLT E HRR HEETGI F SLYPGCIA TGLFREH PLFR LF
Sbjct: 179 GEFEGAKAYKDSKVCNMLTTYELHRRLHEETGITFNSLYPGCIAETGLFREHYPLFRTLF 238
Query: 326 PPFQKYITKGYVSEDEAGKRLAQV 349
PPFQKYITKGYVSE+EAG+RLA V
Sbjct: 239 PPFQKYITKGYVSEEEAGERLAAV 262
|
Classical SDR-like subgroup containing LPOR and related proteins. Protochlorophyllide (Pchlide) reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 311 |
| >gnl|CDD|180983 PRK07453, PRK07453, protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Score = 430 bits (1108), Expect = e-152
Identities = 162/267 (60%), Positives = 198/267 (74%), Gaps = 5/267 (1%)
Query: 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD 144
KG+VIITGASSG+GL AKALA+ G WH+IMACR+ KAE AA+ G+ ++YTI+H+D
Sbjct: 5 AKGTVIITGASSGVGLYAAKALAKRG-WHVIMACRNLKKAEAAAQELGIPPDSYTIIHID 63
Query: 145 LASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 204
L LDSVR+FVD FR G+PLD LVCNAAVY+P KEP + +G+ELS+ TNHLGHFLL
Sbjct: 64 LGDLDSVRRFVDDFRALGKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLC 123
Query: 205 RLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN--VPPKANLGDLRGFAGGLNGLNSSSM 262
LLL+DLK+S P RL+I+G++T N L G +P A+LGDL GF G SM
Sbjct: 124 NLLLEDLKKSPAPDPRLVILGTVTANPKELGGKIPIPAPADLGDLSGFEAGF--KAPISM 181
Query: 263 IDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322
DG F KAYKDSK+CNMLTM+E HRR+HE TGI F+SLYPGC+A T LFR PLF+
Sbjct: 182 ADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVADTPLFRNTPPLFQ 241
Query: 323 LLFPPFQKYITKGYVSEDEAGKRLAQV 349
LFP FQK IT GYVS++ AG+R+AQV
Sbjct: 242 KLFPWFQKNITGGYVSQELAGERVAQV 268
|
Length = 322 |
| >gnl|CDD|212492 cd05327, retinol-DH_like_SDR_c_like, retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 226 bits (579), Expect = 6e-73
Identities = 87/245 (35%), Positives = 118/245 (48%), Gaps = 31/245 (12%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS--AGMAKENYTIMHLDLA 146
V+ITGA+SG+G TA+ LA+ G H+I+ACR+ K E AA ++ LDL+
Sbjct: 4 VVITGANSGIGKETARELAKRG-AHVIIACRNEEKGEEAAAEIKKETGNAKVEVIQLDLS 62
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
SL SVRQF + F LD+L+ NA + P + T +GFEL N+LGHFLL+ L
Sbjct: 63 SLASVRQFAEEFLARFPRLDILINNAGIMAPPRRL---TKDGFELQFAVNYLGHFLLTNL 119
Query: 207 LLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGG 266
LL LK S R++ V SI + N N
Sbjct: 120 LLPVLKAS--APSRIVNVSSIAHRAGPIDFNDLDLEN---------------------NK 156
Query: 267 DFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-PLFRLLF 325
++ KAY SK+ N+L +E RR E TG+ +L+PG + T L R L L
Sbjct: 157 EYSPYKAYGQSKLANILFTRELARR-LEGTGVTVNALHPGVVRTELLRRNGSFFLLYKLL 215
Query: 326 PPFQK 330
PF K
Sbjct: 216 RPFLK 220
|
Classical SDR subgroup containing retinol-DHs, LPORs, and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Pchlide reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14, dehydrogenase/reductase SDR family member (DHRS)-12 , -13 and -X (a DHRS on chromosome X), and WWOX (WW domain-containing oxidoreductase), as well as a Neurospora crassa SDR encoded by the blue light inducible bli-4 gene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 269 |
| >gnl|CDD|212495 cd09807, retinol-DH_like_SDR_c, retinol dehydrogenases (retinol-DHs), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 1e-42
Identities = 98/253 (38%), Positives = 128/253 (50%), Gaps = 44/253 (17%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIM--HLDLA 146
VIITGA++G+G TA+ LA G +IMACRD K E AA N+ ++ HLDLA
Sbjct: 4 VIITGANTGIGKETARELARRGA-RVIMACRDMAKCEEAAAEIRRDTLNHEVIVRHLDLA 62
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
SL S+R F F LDVL+ NA V P +K T +GFE+ G NHLGHFLL+
Sbjct: 63 SLKSIRAFAAEFLAEEDRLDVLINNAGVMRCPYSK----TEDGFEMQFGVNHLGHFLLTN 118
Query: 206 LLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDG 265
LLLD LK+S PS R++ V S+ AG + + LNS
Sbjct: 119 LLLDLLKKSA-PS-RIVNVSSLA----HKAGKIN--------------FDDLNSEK---- 154
Query: 266 GDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI------- 318
++ AY SK+ N+L +E RR + TG+ +L+PG + T L R H
Sbjct: 155 -SYNTGFAYCQSKLANVLFTRELARRL-QGTGVTVNALHPG-VVRTELGR-HTGIHHLFL 210
Query: 319 -PLFRLLFPPFQK 330
L LF PF K
Sbjct: 211 STLLNPLFWPFVK 223
|
Classical SDR-like subgroup containing retinol-DHs and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 274 |
| >gnl|CDD|187669 cd09809, human_WWOX_like_SDR_c-like, human WWOX (WW domain-containing oxidoreductase)-like, classical (c)-like SDRs | Back alignment and domain information |
|---|
Score = 135 bits (340), Expect = 3e-37
Identities = 93/261 (35%), Positives = 129/261 (49%), Gaps = 46/261 (17%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK--SAGMAKENYTIMHLDLA 146
+IITGA+SG+G TA++ A G H+I+ACR+ +A A K M LDLA
Sbjct: 4 IIITGANSGIGFETARSFALHGA-HVILACRNMSRASAAVSRILEEWHKARVEAMTLDLA 62
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
SL SV++F + F+ PL VLVCNAAV+ A T T +G E + NHLGHF L +L
Sbjct: 63 SLRSVQRFAEAFKAKNSPLHVLVCNAAVF---ALPWTLTEDGLETTFQVNHLGHFYLVQL 119
Query: 207 LLDDLKQSDYPSKRLIIVGSIT---GNTNTLAGNV------PPKANLGDLRGFAGGLNGL 257
L D L++S R+I+V S + + GN+ PPK
Sbjct: 120 LEDVLRRS--APARVIVVSSESHRFTDLPDSCGNLDFSLLSPPKKKYW------------ 165
Query: 258 NSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317
SM+ AY +K+CN+L E HRR GI SL+PG + + + R
Sbjct: 166 ---SML---------AYNRAKLCNILFSNELHRRLSPR-GITSNSLHPGNMMYSSIHRNW 212
Query: 318 IPLFRLLFP---PFQKYITKG 335
++ LLF PF K + +G
Sbjct: 213 W-VYTLLFTLARPFTKSMQQG 232
|
Classical-like SDR domain of human WWOX and related proteins. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 284 |
| >gnl|CDD|235737 PRK06197, PRK06197, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 8e-36
Identities = 82/248 (33%), Positives = 112/248 (45%), Gaps = 48/248 (19%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK--SAGMAKENYTIMHLDLA 146
++TGA++GLG TA ALA G H+++A R+ K + AA +A + T+ LDL
Sbjct: 19 AVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLT 77
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAV-YLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
SL SVR D R + +D+L+ NA V Y P TA+GFEL GTNHLGHF L+
Sbjct: 78 SLASVRAAADALRAAYPRIDLLINNAGVMYTPKQT----TADGFELQFGTNHLGHFALTG 133
Query: 206 LLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDG 265
LLLD L P R++ V S G + I
Sbjct: 134 LLLDRLL--PVPGSRVVTVSS----------------------------GGHRIRAAIHF 163
Query: 266 GD------FDGAKAYKDSKVCNMLTMQEFHRRFHEETG--IAFASLYPGCIATTGLFREH 317
D ++ AY SK+ N+L E RR IA A+ +PG ++ T L R
Sbjct: 164 DDLQWERRYNRVAAYGQSKLANLLFTYELQRRLAAAGATTIAVAA-HPG-VSNTELARNL 221
Query: 318 IPLFRLLF 325
R +
Sbjct: 222 PRALRPVA 229
|
Length = 306 |
| >gnl|CDD|235736 PRK06196, PRK06196, oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 1e-29
Identities = 83/255 (32%), Positives = 114/255 (44%), Gaps = 46/255 (18%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
I+TG SGLGL T +ALA+ G H+I+ R A A AG+ + ++ LDLA L+
Sbjct: 30 IVTGGYSGLGLETTRALAQAGA-HVIVPARRPDVAREAL--AGI--DGVEVVMLDLADLE 84
Query: 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLD 209
SVR F + F SGR +D+L+ NA V A T +G+E TNHLGHF L LL
Sbjct: 85 SVRAFAERFLDSGRRIDILINNAGV---MACPETRVGDGWEAQFATNHLGHFALVNLLWP 141
Query: 210 DLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFD 269
L R++ + S AG+ D F G +D
Sbjct: 142 ALAAGA--GARVVALSS--------AGHRRSPIRWDDPH-FTRG--------------YD 176
Query: 270 GAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQ 329
AY SK N L + ++ G+ S++PG I T PL R L P +
Sbjct: 177 KWLAYGQSKTANALFAVHLDKLG-KDQGVRAFSVHPGGILT--------PLQRHL--PRE 225
Query: 330 KYITKGYVSEDEAGK 344
+ + G+V DE G
Sbjct: 226 EQVALGWV--DEHGN 238
|
Length = 315 |
| >gnl|CDD|212491 cd05233, SDR_c, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 3e-26
Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 5/141 (3%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGASSG+G A A+ LA G +++A R+ A + + D++
Sbjct: 1 ALVTGASSGIGRAIARRLAREG-AKVVLADRNEEALAELAAIEALGGNAVAV-QADVSDE 58
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
+ V V+ LD+LV NA + P E T E ++ + N G FLL+R L
Sbjct: 59 EDVEALVEEALEEFGRLDILVNNAGIARPGPLE-ELTDEDWDRVLDVNLTGVFLLTRAAL 117
Query: 209 DDLKQSDYPSKRLIIVGSITG 229
+K+ R++ + S+ G
Sbjct: 118 PHMKKQGGG--RIVNISSVAG 136
|
SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 234 |
| >gnl|CDD|235627 PRK05854, PRK05854, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 3e-24
Identities = 77/229 (33%), Positives = 103/229 (44%), Gaps = 37/229 (16%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA----KSAGMAKENYTIMHLDL 145
++TGAS GLGL A+ LA G +I+ R+ K E A + AK ++ LDL
Sbjct: 18 VVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAK--LSLRALDL 74
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+SL SV + R GRP+ +L+ NA V P ++ TA+GFEL GTNHLGHF L+
Sbjct: 75 SSLASVAALGEQLRAEGRPIHLLINNAGVMTPPERQT--TADGFELQFGTNHLGHFALTA 132
Query: 206 LLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDG 265
LL L+ R+ SI + N D LN S
Sbjct: 133 HLLPLLRAG---RARVTSQSSIAARRGAI--------NWDD-------LNWERS------ 168
Query: 266 GDFDGAKAYKDSKVCNMLTMQEFHRRFHEET-GIAFASLYPGCIATTGL 313
+ G +AY SK+ L E RR GI +PG +A T L
Sbjct: 169 --YAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPG-VAPTNL 214
|
Length = 313 |
| >gnl|CDD|187585 cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 2e-21
Identities = 51/223 (22%), Positives = 83/223 (37%), Gaps = 44/223 (19%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGA+ G+G + LA++G +I+ RD + + A + + LD+
Sbjct: 3 ALVTGANRGIGFEIVRQLAKSGPGTVILTARDVERGQAAVEKLRAEGLSVRFHQLDVTDD 62
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
S+ D LD+LV NA + + T T E ++ TN G +++ LL
Sbjct: 63 ASIEAAADFVEEKYGGLDILVNNAGIAFKGFDDSTPTREQARETMKTNFFGTVDVTQALL 122
Query: 209 DDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDF 268
LK+S R++ V S G+ +
Sbjct: 123 PLLKKSPAG--RIVNVSSGLGSLTS----------------------------------- 145
Query: 269 DGAKAYKDSKVC-NMLTMQEFHRRFHEETGIAFASLYPGCIAT 310
AY SK N LT + +ETGI + PG + T
Sbjct: 146 ----AYGVSKAALNALTR--ILAKELKETGIKVNACCPGWVKT 182
|
PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 225 |
| >gnl|CDD|223959 COG1028, FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 3e-21
Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 8/148 (5%)
Query: 89 VIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDLA 146
++TGASSG+G A A+ALA G + + + AE A + A + D++
Sbjct: 8 ALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIKEAGGGRAAAVAADVS 67
Query: 147 S-LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+SV V +D+LV NA + P A T E ++ + N LG FLL+R
Sbjct: 68 DDEESVEALVAAAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTR 127
Query: 206 LLLDDLKQSDYPSKRLIIVGSITGNTNT 233
L +K+ +R++ + S+ G
Sbjct: 128 AALPLMKK-----QRIVNISSVAGLGGP 150
|
Length = 251 |
| >gnl|CDD|187586 cd05325, carb_red_sniffer_like_SDR_c, carbonyl reductase sniffer-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 9e-20
Identities = 62/236 (26%), Positives = 87/236 (36%), Gaps = 64/236 (27%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDL--- 145
V+ITGAS G+GL + L G +I CRD A + G + I+ LD+
Sbjct: 1 VLITGASRGIGLELVRQLLARGNNTVIATCRD-PSAATELAALGASHSRLHILELDVTDE 59
Query: 146 --ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLL 203
S ++V + R LDVL+ NA + +E N LG LL
Sbjct: 60 IAESAEAVAE-----RLGDAGLDVLINNAGILHSYGPASEVDSEDLLEVFQVNVLGPLLL 114
Query: 204 SRLLLDDLKQSDYPSKRLII-----VGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLN 258
++ L L + ++ II VGSI NT
Sbjct: 115 TQAFLPLLLKG---ARAKIINISSRVGSIGDNT--------------------------- 144
Query: 259 SSSMIDGGDFDGAKAYKDSKVC-NMLTMQEFHRRFHEE---TGIAFASLYPGCIAT 310
GG + +Y+ SK NMLT + E GI SL+PG + T
Sbjct: 145 -----SGGWY----SYRASKAALNMLT-----KSLAVELKRDGITVVSLHPGWVRT 186
|
Sniffer is an NADPH-dependent carbonyl reductase of the classical SDR family. Studies in Drosophila melanogaster implicate Sniffer in the prevention of neurodegeneration due to aging and oxidative-stress. This subgroup also includes Rhodococcus sp. AD45 IsoH, which is an NAD-dependent 1-hydroxy-2-glutathionyl-2-methyl-3-butene dehydrogenase involved in isoprene metabolism, Aspergillus nidulans StcE encoded by a gene which is part of a proposed sterigmatocystin biosynthesis gene cluster, Bacillus circulans SANK 72073 BtrF encoded by a gene found in the butirosin biosynthesis gene cluster, and Aspergillus parasiticus nor-1 involved in the biosynthesis of aflatoxins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 233 |
| >gnl|CDD|187668 cd09808, DHRS-12_like_SDR_c-like, human dehydrogenase/reductase SDR family member (DHRS)-12/FLJ13639-like, classical (c)-like SDRs | Back alignment and domain information |
|---|
Score = 82.3 bits (203), Expect = 4e-18
Identities = 65/236 (27%), Positives = 112/236 (47%), Gaps = 34/236 (14%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS--AGMAKENYTIMHLDL 145
S +ITGA+SG+G A A A+A+ G + M CR+ +AE A K +N + +D+
Sbjct: 3 SFLITGANSGIGKAAALAIAKRGG-TVHMVCRNQTRAEEARKEIETESGNQNIFLHIVDM 61
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+ V +FV+ F+ G+ L VL+ NA + + T +G E + TN LG ++L+
Sbjct: 62 SDPKQVWEFVEEFKEEGKKLHVLINNAGCMV---NKRELTEDGLEKNFATNTLGTYILTT 118
Query: 206 LLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDG 265
L+ L++ + P R+I V S G + K N +L+ +
Sbjct: 119 HLIPVLEKEEDP--RVITVSS--------GGMLVQKLNTNNLQS--------------ER 154
Query: 266 GDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321
FDG Y +K ++ +++ ++ E I F+ ++PG T + R +P F
Sbjct: 155 TAFDGTMVYAQNKRQQVIMTEQWAKKHPE---IHFSVMHPGWADTPAV-RNSMPDF 206
|
Classical SDR-like subgroup containing human DHRS-12/FLJ13639, the 36K protein of zebrafish CNS myelin, and related proteins. DHRS-12/FLJ13639 is expressed in neurons and oligodendrocytes in the human cerebral cortex. Proteins in this subgroup share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 255 |
| >gnl|CDD|215720 pfam00106, adh_short, short chain dehydrogenase | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 2e-16
Identities = 40/145 (27%), Positives = 60/145 (41%), Gaps = 9/145 (6%)
Query: 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE--NYTIMHLD 144
G+V+ITG + GLGLA A+ LA G H+++ R A A + T+ D
Sbjct: 1 GTVLITGGTGGLGLALARWLAAEGARHLVLVSRRGPAPGAAELVAELEALGAEVTVAACD 60
Query: 145 LASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 204
+A D++ + + PLD +V NA V L T E FE + G + L
Sbjct: 61 VADRDALAALLAALPAALGPLDGVVHNAGV-LDDGPLEELTPERFERVLAPKVTGAWNLH 119
Query: 205 RLLLDDLKQSDYPSKRLIIVGSITG 229
L D ++ S+ G
Sbjct: 120 ELTRDL------DLGAFVLFSSVAG 138
|
This family contains a wide variety of dehydrogenases. Length = 167 |
| >gnl|CDD|235546 PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Score = 77.5 bits (192), Expect = 2e-16
Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 8/150 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGAS G+G A A LA G +++ + AE A A ++ D++
Sbjct: 8 ALVTGASRGIGRAIALRLAADG-AKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDE 66
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
+VR ++ + LD+LV NA + A P + E ++ + N G F + R L
Sbjct: 67 AAVRALIEAAVEAFGALDILVNNAGIT-RDALLPRMSEEDWDRVIDVNLTGTFNVVRAAL 125
Query: 209 DDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238
+ ++ Y R++ + S++G + GN
Sbjct: 126 PPMIKARY--GRIVNISSVSG----VTGNP 149
|
Length = 246 |
| >gnl|CDD|187632 cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 1e-14
Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V+ITG SSG+GLA A ALA G + +I R+ K E + +N ++ LD+
Sbjct: 3 VLITGCSSGIGLALALALAAQG-YRVIATARNPDKLE---SLGELLNDNLEVLELDVTDE 58
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
+S++ V +DVLV NA L E + E N G ++R L
Sbjct: 59 ESIKAAVKEVIERFGRIDVLVNNAGYGLFGPLE-ETSIEEVRELFEVNVFGPLRVTRAFL 117
Query: 209 DDLKQSDYPSKRLIIVGSITG 229
+++ S R++ V S+ G
Sbjct: 118 PLMRKQ--GSGRIVNVSSVAG 136
|
17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248 |
| >gnl|CDD|183775 PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 3e-14
Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 6/142 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGA+ G+G A A LA G +I+ A A+ A +D+
Sbjct: 9 ALVTGAARGIGRAIAVRLAADGA-EVIVVDICGDDAAATAELVEAAGGKARARQVDVRDR 67
Query: 149 DSVRQFV-DTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
+++ V GR LD+LV NA ++ T E +E + N G FLL++
Sbjct: 68 AALKAAVAAGVEDFGR-LDILVANAGIFPLTPFA-EMDDEQWERVIDVNLTGTFLLTQAA 125
Query: 208 LDDLKQSDYPSKRLIIVGSITG 229
L L ++ R+++ S+ G
Sbjct: 126 LPALIRAGGG--RIVLTSSVAG 145
|
Length = 251 |
| >gnl|CDD|226674 COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 5e-14
Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 14/161 (8%)
Query: 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKEN---- 137
TL+ +ITGASSG+G ATA+ALAE G +++A R R + +A E
Sbjct: 2 TTLKGKVALITGASSGIGEATARALAEAG-AKVVLAAR------REERLEALADEIGAGA 54
Query: 138 YTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNH 197
+ LD+ +V ++ +D+LV NA + L + ++ + TN
Sbjct: 55 ALALALDVTDRAAVEAAIEALPEEFGRIDILVNNAGLALG-DPLDEADLDDWDRMIDTNV 113
Query: 198 LGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238
G +R +L + + S +I +GSI G G V
Sbjct: 114 KGLLNGTRAVLPGMVERK--SGHIINLGSIAGRYPYPGGAV 152
|
Length = 246 |
| >gnl|CDD|187604 cd05346, SDR_c5, classical (c) SDR, subgroup 5 | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 1e-13
Identities = 46/154 (29%), Positives = 74/154 (48%), Gaps = 10/154 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYT----IMHLD 144
V+ITGASSG+G ATA+ A+ G +I+ R +AER + A + + LD
Sbjct: 3 VLITGASSGIGEATARRFAKAG-AKLILTGR---RAERLQELADELGAKFPVKVLPLQLD 58
Query: 145 LASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 204
++ +S+ ++ R +D+LV NA + L E +E + TN G ++
Sbjct: 59 VSDRESIEAALENLPEEFRDIDILVNNAGLALGLDPAQEADLEDWETMIDTNVKGLLNVT 118
Query: 205 RLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238
RL+L + + +I +GSI G GNV
Sbjct: 119 RLILPIMIARNQGH--IINLGSIAGRYPYAGGNV 150
|
These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 249 |
| >gnl|CDD|183778 PRK12829, PRK12829, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 2e-13
Identities = 45/143 (31%), Positives = 63/143 (44%), Gaps = 7/143 (4%)
Query: 88 SVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA 146
V++TG +SG+G A A+A AE G + H+ L AA +A + T D+A
Sbjct: 13 RVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAAL----AATAARLPGAKVTATVADVA 68
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
V + DT LDVLV NA + PT T E +E ++ N G F +R
Sbjct: 69 DPAQVERVFDTAVERFGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARA 128
Query: 207 LLDDLKQSDYPSKRLIIVGSITG 229
+ LK S +II S
Sbjct: 129 AVPLLKAS--GHGGVIIALSSVA 149
|
Length = 264 |
| >gnl|CDD|187645 cd08941, 3KS_SDR_c, 3-keto steroid reductase, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 2e-12
Identities = 50/179 (27%), Positives = 74/179 (41%), Gaps = 41/179 (22%)
Query: 89 VIITGASSGLGLATAKAL----AETGKWHIIMACRDFLKAERA----AKSAGMAKENYTI 140
V++TGA+SGLGLA + L E + +I+ACR+ +AE A S A+ +
Sbjct: 4 VLVTGANSGLGLAICERLLAEDDENPELTLILACRNLQRAEAACRALLASHPDARVVFDY 63
Query: 141 MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNA-----------------------AVYLP 177
+ +DL+++ SV ++ LD L NA AV P
Sbjct: 64 VLVDLSNMVSVFAAAKELKKRYPRLDYLYLNAGIMPNPGIDWIGAIKEVLTNPLFAVTNP 123
Query: 178 TAK---------EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 227
T K T +G TN GH+ L R L L +SD S ++I S+
Sbjct: 124 TYKIQAEGLLSQGDKATEDGLGEVFQTNVFGHYYLIRELEPLLCRSDGGS-QIIWTSSL 181
|
3-keto steroid reductase (in concert with other enzymes) catalyzes NADP-dependent sterol C-4 demethylation, as part of steroid biosynthesis. 3-keto reductase is a classical SDR, with a well conserved canonical active site tetrad and fairly well conserved characteristic NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 290 |
| >gnl|CDD|235725 PRK06179, PRK06179, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 2e-12
Identities = 48/145 (33%), Positives = 72/145 (49%), Gaps = 14/145 (9%)
Query: 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDL 145
++TGASSG+G ATA+ LA G R F + A++A + ++ LD+
Sbjct: 4 SKVALVTGASSGIGRATAEKLARAG-------YRVFGTSRNPARAAPIP--GVELLELDV 54
Query: 146 ASLDSVRQFVDT-FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 204
SV+ VD R+GR +DVLV NA V L A E + A+ L TN G ++
Sbjct: 55 TDDASVQAAVDEVIARAGR-IDVLVNNAGVGLAGAAEESSIAQAQAL-FDTNVFGILRMT 112
Query: 205 RLLLDDLKQSDYPSKRLIIVGSITG 229
R +L ++ S R+I + S+ G
Sbjct: 113 RAVLPHMRAQG--SGRIINISSVLG 135
|
Length = 270 |
| >gnl|CDD|187643 cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 2e-12
Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 8/145 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA----KSAGMAKENYTIMHLD 144
V+ITG SSG+G A AK L + G ++I+ R K E A A + + + + D
Sbjct: 4 VLITGGSSGIGKALAKELVKEGA-NVIIVARSESKLEEAVEEIEAEANASGQKVSYISAD 62
Query: 145 LASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 204
L+ + V Q G P D++V A + +P E TAE FE + N+ G ++
Sbjct: 63 LSDYEEVEQAFAQAVEKGGPPDLVVNCAGISIPGLFE-DLTAEEFERGMDVNYFGSLNVA 121
Query: 205 RLLLDDLKQSDYPSKRLIIVGSITG 229
+L +K + ++ V S
Sbjct: 122 HAVLPLMK--EQRPGHIVFVSSQAA 144
|
These proteins include members identified as KDSR, ribitol type dehydrogenase, and others. The group shows strong conservation of the active site tetrad and glycine rich NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 239 |
| >gnl|CDD|212493 cd08932, HetN_like_SDR_c, HetN oxidoreductase-like, classical (c) SDR | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 8e-12
Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 9/166 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGAS G+G+ A+ALA G + + + R+ + + + + D
Sbjct: 3 ALVTGASRGIGIEIARALARDG-YRVSLGLRN----PEDLAALSASGGDVEAVPYDARDP 57
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
+ R VD R +DVLV NA + PT AE E N + L+R LL
Sbjct: 58 EDARALVDALRDRFGRIDVLVHNAGIGRPTTLREGSDAE-LEAHFSINVIAPAELTRALL 116
Query: 209 DDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGL 254
L+++ S R++ + S++G LAGN A+ LR A L
Sbjct: 117 PALREA--GSGRVVFLNSLSGKR-VLAGNAGYSASKFALRALAHAL 159
|
This subgroup includes Anabaena sp. strain PCC 7120 HetN, a putative oxidoreductase involved in heterocyst differentiation, and related proteins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 223 |
| >gnl|CDD|237218 PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 8e-12
Identities = 34/154 (22%), Positives = 63/154 (40%), Gaps = 8/154 (5%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLA 146
++TGA+ GLG A A LA G +++ R D AE ++ + D+
Sbjct: 8 VALVTGAARGLGRAIALRLARAG-ADVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVT 66
Query: 147 SLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
++ V R GR +D+LV NA + + + ++ + N G F L R
Sbjct: 67 DKAALEAAVAAAVERFGR-IDILVNNAGI-FEDKPLADMSDDEWDEVIDVNLSGVFHLLR 124
Query: 206 LLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239
++ +++ R++ + S+ G G
Sbjct: 125 AVVPPMRKQRG--GRIVNISSVAGLPGW-PGRSN 155
|
Length = 249 |
| >gnl|CDD|187666 cd09806, type1_17beta-HSD-like_SDR_c, human estrogenic 17beta-hydroxysteroid dehydrogenase type 1 (type 1 17beta-HSD)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 9e-12
Identities = 44/144 (30%), Positives = 67/144 (46%), Gaps = 8/144 (5%)
Query: 89 VIITGASSGLGLATAKALA--ETGKWHIIMACRDFLKAERAAKSAG-MAKENYTIMHLDL 145
V+ITG SSG+GL A LA + ++ + RD K R ++AG +A + LD+
Sbjct: 3 VLITGCSSGIGLHLAVRLASDPSKRFKVYATMRDLKKKGRLWEAAGALAGGTLETLQLDV 62
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
SV V+ R +DVLVCNA V L E + + N G + +
Sbjct: 63 CDSKSVAAAVERVT--ERHVDVLVCNAGVGLLGPLE-ALSEDAMASVFDVNVFGTVRMLQ 119
Query: 206 LLLDDLKQSDYPSKRLIIVGSITG 229
L D+K+ S R+++ S+ G
Sbjct: 120 AFLPDMKRRG--SGRILVTSSVGG 141
|
17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. This classical SDR subgroup includes human type 1 17beta-HSD, human retinol dehydrogenase 8, zebrafish photoreceptor associated retinol dehydrogenase type 2, and a chicken ovary-specific 17beta-hydroxysteroid dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 258 |
| >gnl|CDD|235990 PRK07326, PRK07326, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 9e-12
Identities = 57/190 (30%), Positives = 84/190 (44%), Gaps = 20/190 (10%)
Query: 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMH 142
+L+ +ITG S G+G A A+AL G I A RD + E AA K N +
Sbjct: 3 SLKGKVALITGGSKGIGFAIAEALLAEGYKVAITA-RDQKELEEAAAELN-NKGNVLGLA 60
Query: 143 LDLASLDSVRQFVDTFRRSGRPLDVLVCNAAV--YLPTAKEPTFTAEGFELSVGTNHLGH 200
D+ V++ VD + LDVL+ NA V + P T E + L + TN G
Sbjct: 61 ADVRDEADVQRAVDAIVAAFGGLDVLIANAGVGHFAPVE---ELTPEEWRLVIDTNLTGA 117
Query: 201 FLLSRLLLDDLKQSD-YPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNS 259
F + + LK+ Y +I + S+ G TN AG A+ F GL G +
Sbjct: 118 FYTIKAAVPALKRGGGY----IINISSLAG-TNFFAGGAAYNAS-----KF--GLVGFSE 165
Query: 260 SSMIDGGDFD 269
++M+D +
Sbjct: 166 AAMLDLRQYG 175
|
Length = 237 |
| >gnl|CDD|187594 cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 2e-11
Identities = 36/154 (23%), Positives = 64/154 (41%), Gaps = 16/154 (10%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGAS G+G A A LA G + + R A + N + D++
Sbjct: 3 ALVTGASRGIGRAIALRLAAEGA-KVAVTDRSEEAAAETVEEIKALGGNAAALEADVSDR 61
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAV----YLPTAKEPTFTAEGFELSVGTNHLGHFLLS 204
++V V+ P+D+LV NA + L E E ++ + N G F ++
Sbjct: 62 EAVEALVEKVEAEFGPVDILVNNAGITRDNLLMRMSE-----EDWDAVINVNLTGVFNVT 116
Query: 205 RLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238
+ ++ + + R+I + S+ G L GN
Sbjct: 117 QAVIRAMIKRRS--GRIINISSVVG----LIGNP 144
|
This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 240 |
| >gnl|CDD|211705 TIGR01963, PHB_DH, 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 3e-11
Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 4/142 (2%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 147
+ ++TGA+SG+GLA A+ALA G ++++ AE AAK AG A + + D+
Sbjct: 3 TALVTGAASGIGLAIARALAAAGA-NVVVNDFGEEGAEAAAKVAGDAGGSVIYLPADVTK 61
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
D + + LD+LV NA + E F E ++ + F R
Sbjct: 62 EDEIADMIAAAAAEFGGLDILVNNAGIQHVAPIE-EFPPEDWDRIIAVMLTSAFHTIRAA 120
Query: 208 LDDLKQSDYPSKRLIIVGSITG 229
L +K+ + R+I + S G
Sbjct: 121 LPHMKKQGW--GRIINIASAHG 140
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. Length = 255 |
| >gnl|CDD|236241 PRK08324, PRK08324, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 3e-11
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGA+ G+G ATAK LA G +++A D AE AA G + + D+
Sbjct: 425 ALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELG-GPDRALGVACDVTDE 482
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+V+ + + +D++V NA + + E T + E + S N GHFL++R
Sbjct: 483 AAVQAAFEEAALAFGGVDIVVSNAGIAISGPIEET-SDEDWRRSFDVNATGHFLVAR 538
|
Length = 681 |
| >gnl|CDD|187590 cd05329, TR_SDR_c, tropinone reductase-I and II (TR-1, and TR-II)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 4e-11
Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 7/149 (4%)
Query: 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMH 142
L + ++TG + G+G A + LA G + R+ + +
Sbjct: 3 NLEGKTALVTGGTKGIGYAIVEELAGLGA-EVYTCARNQKELDECLTEWREKGFKVEGSV 61
Query: 143 LDLASLDSVRQFVDT-FRRSGRPLDVLVCNAAVYLPTAKEPT-FTAEGFELSVGTNHLGH 200
D++S ++ +DT G L++LV NA + KE +T E + L + TN
Sbjct: 62 CDVSSRSERQELMDTVASHFGGKLNILVNNAGTNIR--KEAKDYTEEDYSLIMSTNFEAA 119
Query: 201 FLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
+ LSRL LK S + ++ + S+ G
Sbjct: 120 YHLSRLAHPLLKASGNGN--IVFISSVAG 146
|
This subgroup includes TR-I and TR-II; these proteins are members of the SDR family. TRs catalyze the NADPH-dependent reductions of the 3-carbonyl group of tropinone, to a beta-hydroxyl group. TR-I and TR-II produce different stereoisomers from tropinone, TR-I produces tropine (3alpha-hydroxytropane), and TR-II, produces pseudotropine (sigma-tropine, 3beta-hydroxytropane). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 251 |
| >gnl|CDD|187628 cd05370, SDR_c2, classical (c) SDR, subgroup 2 | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 6e-11
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 10/127 (7%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTI--MHLDLA 146
V+ITG +SG+GLA A+ E G +I+ R R + A KE I + LD+
Sbjct: 8 VLITGGTSGIGLALARKFLEAGN-TVIITGR------REERLAEAKKELPNIHTIVLDVG 60
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+SV + LD+L+ NA + P ++P + + + TN +G L +
Sbjct: 61 DAESVEALAEALLSEYPNLDILINNAGIQRPIDLRDPASDLDKADTEIDTNLIGPIRLIK 120
Query: 206 LLLDDLK 212
L LK
Sbjct: 121 AFLPHLK 127
|
Short-chain dehydrogenases/reductases (SDRs, aka Tyrosine-dependent oxidoreductases) are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 228 |
| >gnl|CDD|236040 PRK07523, PRK07523, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 4e-10
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 2/107 (1%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
++TG+S G+G A A+ LA+ G +I+ RD K AA+S + + D+ D
Sbjct: 14 LVTGSSQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHD 72
Query: 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTN 196
+VR +D F P+D+LV NA + T E F A+ FE + TN
Sbjct: 73 AVRAAIDAFEAEIGPIDILVNNAGMQFRTPLE-DFPADAFERLLRTN 118
|
Length = 255 |
| >gnl|CDD|187662 cd09761, A3DFK9-like_SDR_c, Clostridium thermocellum A3DFK9-like, a putative carbohydrate or polyalcohol metabolizing SDR, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 5e-10
Identities = 36/124 (29%), Positives = 51/124 (41%), Gaps = 7/124 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
I+TG G+G E G ++ A D ER A A N +H D+A
Sbjct: 4 AIVTGGGHGIGKQICLDFLEAG-DKVVFADID---EERGADFAEAEGPNLFFVHGDVADE 59
Query: 149 DSVRQFV-DTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
V+ V + GR +DVLV NAA + E ++ + N G + LSR
Sbjct: 60 TLVKFVVYAMLEKLGR-IDVLVNNAARGSKGILS-SLLLEEWDRILSVNLTGPYELSRYC 117
Query: 208 LDDL 211
D+L
Sbjct: 118 RDEL 121
|
This subgroup includes a putative carbohydrate or polyalcohol metabolizing SDR (A3DFK9) from Clostridium thermocellum. Its members have a TGXXXGXG classical-SDR glycine-rich NAD-binding motif, and some have a canonical SDR active site tetrad (A3DFK9 lacks the upstream Asn). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 242 |
| >gnl|CDD|180744 PRK06914, PRK06914, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 6e-10
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 25/151 (16%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLAS 147
I+TGASSG GL T LA+ G + +I R+ K E A ++N + LD+
Sbjct: 7 IVTGASSGFGLLTTLELAKKG-YLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTD 65
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGF--ELSVG-------TNHL 198
+S+ F + GR +D+LV NA + GF E+ V TN
Sbjct: 66 QNSIHNFQLVLKEIGR-IDLLVNNAG----------YANGGFVEEIPVEEYRKQFETNVF 114
Query: 199 GHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
G +++ +L +++ S ++I + SI+G
Sbjct: 115 GAISVTQAVLPYMRKQK--SGKIINISSISG 143
|
Length = 280 |
| >gnl|CDD|181136 PRK07825, PRK07825, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 9e-10
Identities = 33/91 (36%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHL 143
LR V ITG + G+GLATA+ALA G + + D A+ A G+ L
Sbjct: 3 LRGKVVAITGGARGIGLATARALAALGA-RVAIGDLDEALAKETAAELGLVVGGP----L 57
Query: 144 DLASLDSVRQFVDTFRRSGRPLDVLVCNAAV 174
D+ S F+D P+DVLV NA V
Sbjct: 58 DVTDPASFAAFLDAVEADLGPIDVLVNNAGV 88
|
Length = 273 |
| >gnl|CDD|187596 cd05337, BKR_1_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 1, classical (c) SDR | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 2e-09
Identities = 38/147 (25%), Positives = 57/147 (38%), Gaps = 5/147 (3%)
Query: 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDL 145
+ I+TGAS G+G A A LA G I D +A A D+
Sbjct: 1 RPVAIVTGASRGIGRAIATELAARGFDIAINDLPDDDQATEVVAEVLAAGRRAIYFQADI 60
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEP-TFTAEGFELSVGTNHLGHFLLS 204
L +D LD LV NA + + + T + F+ + N G F L+
Sbjct: 61 GELSDHEALLDQAWEDFGRLDCLVNNAGIAVRPRGDLLDLTEDSFDRLIAINLRGPFFLT 120
Query: 205 ----RLLLDDLKQSDYPSKRLIIVGSI 227
R +++ + D P + +I V SI
Sbjct: 121 QAVARRMVEQPDRFDGPHRSIIFVTSI 147
|
This subgroup includes Escherichia coli CFT073 FabG. The Escherichai coli K12 BKR, FabG, belongs to a different subgroup. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 255 |
| >gnl|CDD|237100 PRK12429, PRK12429, 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 2e-09
Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 10/150 (6%)
Query: 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMH 142
L+ ++TGA+SG+GL A ALA+ G +++A + A AA++ K +
Sbjct: 1 MLKGKVALVTGAASGIGLEIALALAKEGA-KVVIADLNDEAAAAAAEAL--QKAGGKAIG 57
Query: 143 L--DLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLG 199
+ D+ +++ +D G +D+LV NA + E F E ++ + G
Sbjct: 58 VAMDVTDEEAINAGIDYAVETFGG-VDILVNNAGIQHVAPIE-DFPTEKWKKMIAIMLDG 115
Query: 200 HFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
FL ++ L +K R+I + S+ G
Sbjct: 116 AFLTTKAALPIMKAQGG--GRIINMASVHG 143
|
Length = 258 |
| >gnl|CDD|187627 cd05369, TER_DECR_SDR_a, Trans-2-enoyl-CoA reductase (TER) and 2,4-dienoyl-CoA reductase (DECR), atypical (a) SDR | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 2e-09
Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 14/150 (9%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK---SAGMAKENYTIMHLDL 145
ITG +G+G A AKA AE G + +A R E AA+ SA + + D+
Sbjct: 6 AFITGGGTGIGKAIAKAFAELG-ASVAIAGRKPEVLEAAAEEISSATGGRAHPIQC--DV 62
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
++V VD + +D+L+ NAA E + + GF+ + + G F ++
Sbjct: 63 RDPEAVEAAVDETLKEFGKIDILINNAAGNFLAPAE-SLSPNGFKTVIDIDLNGTFNTTK 121
Query: 206 LLLDDLKQSDYPSKRLIIVGSITGNTNTLA 235
+ L ++ + GSI + T A
Sbjct: 122 AVGKRLIEAKHG-------GSILNISATYA 144
|
TTER is a peroxisomal protein with a proposed role in fatty acid elongation. Fatty acid synthesis is known to occur in the both endoplasmic reticulum and mitochondria; peroxisomal TER has been proposed as an additional fatty acid elongation system, it reduces the double bond at C-2 as the last step of elongation. This system resembles the mitochondrial system in that acetyl-CoA is used as a carbon donor. TER may also function in phytol metabolism, reducting phytenoyl-CoA to phytanoyl-CoA in peroxisomes. DECR processes double bonds in fatty acids to increase their utility in fatty acid metabolism; it reduces 2,4-dienoyl-CoA to an enoyl-CoA. DECR is active in mitochondria and peroxisomes. This subgroup has the Gly-rich NAD-binding motif of the classical SDR family, but does not display strong identity to the canonical active site tetrad, and lacks the characteristic Tyr at the usual position. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 249 |
| >gnl|CDD|187634 cd08929, SDR_c4, classical (c) SDR, subgroup 4 | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-09
Identities = 52/184 (28%), Positives = 71/184 (38%), Gaps = 27/184 (14%)
Query: 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA 146
+ ++TGAS G+G ATA+ L G I A RD + AA E + D+
Sbjct: 1 KAALVTGASRGIGEATARLLHAEGYRVGICA-RDEARLAAAAAQEL---EGVLGLAGDVR 56
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
VR+ VD + LD LV NA V + T E + L + TN G F
Sbjct: 57 DEADVRRAVDAMEEAFGGLDALVNNAGVGV-MKPVEELTPEEWRLVLDTNLTGAFYCIHK 115
Query: 207 LLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAG------GLNGLNSS 260
L IV N +LAG +G A GL GL+ +
Sbjct: 116 AAPALL----RRGGGTIV-----NVGSLAGKNA-------FKGGAAYNASKFGLLGLSEA 159
Query: 261 SMID 264
+M+D
Sbjct: 160 AMLD 163
|
This subgroup has a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 226 |
| >gnl|CDD|223377 COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 3e-09
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 9/153 (5%)
Query: 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS-AGMAKENYTI 140
++ + +ITGASSG+G AK LA G ++I+ R K E AK +
Sbjct: 2 GPMKGKTALITGASSGIGAELAKQLARRGY-NLILVARREDKLEALAKELEDKTGVEVEV 60
Query: 141 MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNA--AVYLPTAKEPTFTAEGFELSVGTNHL 198
+ DL+ +++ + D + G P+DVLV NA + P + + + E + N L
Sbjct: 61 IPADLSDPEALERLEDELKERGGPIDVLVNNAGFGTFGPFLE---LSLDEEEEMIQLNIL 117
Query: 199 GHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNT 231
L++ +L + + +I +GS G
Sbjct: 118 ALTRLTKAVLPGMVERGAGH--IINIGSAAGLI 148
|
Length = 265 |
| >gnl|CDD|187593 cd05332, 11beta-HSD1_like_SDR_c, 11beta-hydroxysteroid dehydrogenase type 1 (11beta-HSD1)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 3e-09
Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 11/152 (7%)
Query: 79 QGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAER-AAKSAGMAKEN 137
QGK VIITGASSG+G A LA G ++++ R + E ++ + +
Sbjct: 2 QGKV------VIITGASSGIGEELAYHLARLGA-RLVLSARREERLEEVKSECLELGAPS 54
Query: 138 YTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNH 197
++ LD++ L+ Q V+ + LD+L+ NA + + + T + + + N+
Sbjct: 55 PHVVPLDMSDLEDAEQVVEEALKLFGGLDILINNAGISMRSLFHDT-SIDVDRKIMEVNY 113
Query: 198 LGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
G L++ L L + S +++V SI G
Sbjct: 114 FGPVALTKAALPHLIERSQGS--IVVVSSIAG 143
|
Human 11beta_HSD1 catalyzes the NADP(H)-dependent interconversion of cortisone and cortisol. This subgroup also includes human dehydrogenase/reductase SDR family member 7C (DHRS7C) and DHRS7B. These proteins have the GxxxGxG nucleotide binding motif and S-Y-K catalytic triad characteristic of the SDRs, but have an atypical C-terminal domain that contributes to homodimerization contacts. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257 |
| >gnl|CDD|181491 PRK08589, PRK08589, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 4e-09
Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 4/128 (3%)
Query: 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE-RAAKSAGMAKENYTI 140
K L +ITGAS+G+G A+A ALA+ G + + + + + KS G + Y
Sbjct: 2 KRLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNGGKAKAY-- 59
Query: 141 MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGH 200
H+D++ V+ F + +DVL NA V + + + F+ + + G
Sbjct: 60 -HVDISDEQQVKDFASEIKEQFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGT 118
Query: 201 FLLSRLLL 208
FL++++LL
Sbjct: 119 FLMTKMLL 126
|
Length = 272 |
| >gnl|CDD|235500 PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 4e-09
Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 11/152 (7%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGAS G+G A A+ LA G +I AE G + D++
Sbjct: 8 ALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDA 67
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEP--TFTAEGFELSVGTNHLGHFLLSRL 206
+SV + VD + +D+LV NA + T E ++ + TN G F L++
Sbjct: 68 ESVERAVDEAKAEFGGVDILVNNAGI---TRDNLLMRMKEEDWDRVIDTNLTGVFNLTKA 124
Query: 207 LLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238
+ + + S R+I + S+ G L GN
Sbjct: 125 VARPMMKQ--RSGRIINISSVVG----LMGNP 150
|
Length = 248 |
| >gnl|CDD|236372 PRK09072, PRK09072, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 6e-09
Identities = 40/147 (27%), Positives = 59/147 (40%), Gaps = 16/147 (10%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 147
V++TGAS G+G A A+ALA G +++ R+ K E A + + DL S
Sbjct: 7 RVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLP-YPGRHRWVVADLTS 64
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAV----YLPTAKEPTFTAEGFELSVGTNHLGHFLL 203
V R ++VL+ NA V L E E + N L
Sbjct: 65 EAGREA-VLARAREMGGINVLINNAGVNHFALLEDQ-----DPEAIERLLALNLTAPMQL 118
Query: 204 SRLLLDDLKQSDYPSKRLII-VGSITG 229
+R LL L+ +++ VGS G
Sbjct: 119 TRALLPLLRA---QPSAMVVNVGSTFG 142
|
Length = 263 |
| >gnl|CDD|187618 cd05360, SDR_c3, classical (c) SDR, subgroup 3 | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 6e-09
Identities = 45/141 (31%), Positives = 61/141 (43%), Gaps = 4/141 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V+ITGASSG+G ATA A AE G +++A R A+ + D+A
Sbjct: 3 VVITGASSGIGRATALAFAERGA-KVVLAARSAEALHELAREVRELGGEAIAVVADVADA 61
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
V + DT +D V NA V + E T E F N+LGH + L
Sbjct: 62 AQVERAADTAVERFGRIDTWVNNAGVAVFGRFEDV-TPEEFRRVFDVNYLGHVYGTLAAL 120
Query: 209 DDLKQSDYPSKRLIIVGSITG 229
L++ LI VGS+ G
Sbjct: 121 PHLRRRGG--GALINVGSLLG 139
|
These proteins are members of the classical SDR family, with a canonical active site triad (and also active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 233 |
| >gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 7e-09
Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERA-AKSAGMAKENYTIMHLDLA 146
V+ITGASSG+G ATA +AE G ++A + L A ++ G YT DL
Sbjct: 374 VLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTC---DLT 430
Query: 147 SLDSVRQFVDT-FRRSGRPLDVLVCNA 172
+V V G +D LV NA
Sbjct: 431 DSAAVDHTVKDILAEHGH-VDYLVNNA 456
|
Length = 657 |
| >gnl|CDD|180343 PRK05993, PRK05993, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 9e-09
Identities = 40/125 (32%), Positives = 51/125 (40%), Gaps = 16/125 (12%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 147
S++ITG SSG+G A+AL G W + CR + A + E LD A
Sbjct: 6 SILITGCSSGIGAYCARALQSDG-WRVFATCR------KEEDVAALEAEGLEAFQLDYAE 58
Query: 148 LDSVRQFVDT-FRRSGRPLDVLVCNAAVYLPTAKEPTFTA---EGFELSVGTNHLG-HFL 202
+S+ V SG LD L N A P A E T FE N G H L
Sbjct: 59 PESIAALVAQVLELSGGRLDALFNNGAYGQPGAVEDLPTEALRAQFE----ANFFGWHDL 114
Query: 203 LSRLL 207
R++
Sbjct: 115 TRRVI 119
|
Length = 277 |
| >gnl|CDD|187605 cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 1e-08
Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 5/144 (3%)
Query: 86 KGSV-IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD 144
KG V ++TGAS G+G A LAE G +I++ R+ KAE A + T D
Sbjct: 4 KGKVALVTGASRGIGFGIASGLAEAGA-NIVINSRNEEKAEEAQQLIEKEGVEATAFTCD 62
Query: 145 LASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 204
++ ++++ V+ +D+LV NA + E F + + N G F +S
Sbjct: 63 VSDEEAIKAAVEAIEEDFGKIDILVNNAGIIRRHPAE-EFPEAEWRDVIDVNLNGVFFVS 121
Query: 205 RLLLDDLKQSDYPSKRLIIVGSIT 228
+ + + + + ++I + S+
Sbjct: 122 QAVARHMIKQGHG--KIINICSLL 143
|
Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248 |
| >gnl|CDD|187654 cd08951, DR_C-13_KR_SDR_c_like, daunorubicin C-13 ketoreductase (KR), classical (c)-like SDRs | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 1e-08
Identities = 41/143 (28%), Positives = 61/143 (42%), Gaps = 17/143 (11%)
Query: 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD 144
+ ITG+S GLGLA A+ L G +++ R +RAA + ++ D
Sbjct: 6 PMKRIFITGSSDGLGLAAARTLLHQGH-EVVLHARS---QKRAADAKAACPGAAGVLIGD 61
Query: 145 LASLDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFLL 203
L+SL R+ D GR D ++ NA + P K P G V N L ++L
Sbjct: 62 LSSLAETRKLADQVNAIGR-FDAVIHNAGILSGPNRKTPD---TGIPAMVAVNVLAPYVL 117
Query: 204 SRLLLDDLKQSDYPSKRLIIVGS 226
+ L+ KRLI + S
Sbjct: 118 TALIR--------RPKRLIYLSS 132
|
Daunorubicin is a clinically important therapeutic compound used in some cancer treatments. Daunorubicin C-13 ketoreductase is member of the classical SDR family with a canonical glycine-rich NAD(P)-binding motif, but lacking a complete match to the active site tetrad characteristic of this group. The critical Tyr, plus the Lys and upstream Asn are present, but the catalytic Ser is replaced, generally by Gln. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 260 |
| >gnl|CDD|187584 cd05323, ADH_SDR_c_like, insect type alcohol dehydrogenase (ADH)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 1e-08
Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 11/147 (7%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
IITG +SG+GLATAK L + G + + R+ A A K T + D+ S
Sbjct: 3 AIITGGASGIGLATAKLLLKKG-AKVAILDRNENPGAAAELQAINPKVKATFVQCDVTSW 61
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAV-----YLPTAKEPTFTAEGFELSVGTNHLGHFLL 203
+ + +D+L+ NA + YL K P +E ++ N G
Sbjct: 62 EQLAAAFKKAIEKFGRVDILINNAGILDEKSYLFAGKLP----PPWEKTIDVNLTGVINT 117
Query: 204 SRLLLDDLKQSDY-PSKRLIIVGSITG 229
+ L L + ++ ++ +GS+ G
Sbjct: 118 TYLALHYMDKNKGGKGGVIVNIGSVAG 144
|
This subgroup contains insect type ADH, and 15-hydroxyprostaglandin dehydrogenase (15-PGDH) type I; these proteins are classical SDRs. ADH catalyzes the NAD+-dependent oxidation of alcohols to aldehydes/ketones. This subgroup is distinct from the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase/reductase family, and evolved in fruit flies to allow the digestion of fermenting fruit. 15-PGDH catalyzes the NAD-dependent interconversion of (5Z,13E)-(15S)-11alpha,15-dihydroxy-9-oxoprost-13-enoate and (5Z,13E)-11alpha-hydroxy-9,15-dioxoprost-13-enoate, and has a typical SDR glycine-rich NAD-binding motif, which is not fully present in ADH. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 244 |
| >gnl|CDD|187600 cd05341, 3beta-17beta-HSD_like_SDR_c, 3beta17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-08
Identities = 44/141 (31%), Positives = 67/141 (47%), Gaps = 7/141 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
I+TG + GLGLA A+ L G ++++ + + AA G + HLD+
Sbjct: 8 AIVTGGARGLGLAHARLLVAEGA-KVVLSDILDEEGQAAAAELG---DAARFFHLDVTDE 63
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
D VDT R + LDVLV NA + E T T E + + N G FL +R ++
Sbjct: 64 DGWTAVVDTAREAFGRLDVLVNNAGILTGGTVE-TTTLEEWRRLLDINLTGVFLGTRAVI 122
Query: 209 DDLKQSDYPSKRLIIVGSITG 229
+K++ S +I + SI G
Sbjct: 123 PPMKEAGGGS--IINMSSIEG 141
|
This subgroup includes members identified as 3beta17beta hydroxysteroid dehydrogenase, 20beta hydroxysteroid dehydrogenase, and R-alcohol dehydrogenase. These proteins exhibit the canonical active site tetrad and glycine rich NAD(P)-binding motif of the classical SDRs. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 247 |
| >gnl|CDD|187602 cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 2e-08
Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 10/144 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++T ASSG+GLA A+ALA G I A R+ ERAA + DL
Sbjct: 4 ALVTAASSGIGLAIARALAREGARVAICA-RNRENLERAASELRAGGAGVLAVVADLTDP 62
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTF---TAEGFELSVGTNHLGHFLLSR 205
+ + + V+ + +D+LV NA F T E + + L + R
Sbjct: 63 EDIDRLVEKAGDAFGRVDILVNNA----GGPPPGPFAELTDEDWLEAFDLKLLSVIRIVR 118
Query: 206 LLLDDLKQSDYPSKRLIIVGSITG 229
+L +K+ + R++ + S+T
Sbjct: 119 AVLPGMKERGWG--RIVNISSLTV 140
|
This subgroup resembles the SDR family, but does not have a perfect match to the NAD-binding motif or the catalytic tetrad characteristic of the SDRs. It includes the SDRs, Q9HYA2 from Pseudomonas aeruginosa PAO1 and APE0912 from Aeropyrum pernix K1. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 253 |
| >gnl|CDD|183833 PRK12939, PRK12939, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 3e-08
Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 8/142 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIM--HLDLA 146
++TGA+ GLG A A+ALAE G + D L AE +A + DLA
Sbjct: 10 ALVTGAARGLGAAFAEALAEAG-ATVAFN--DGLAAEARELAAALEAAGGRAHAIAADLA 66
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
SV++F D + LD LV NA + + + ++ + N G FL+ R
Sbjct: 67 DPASVQRFFDAAAAALGGLDGLVNNAGI-TNSKSATELDIDTWDAVMNVNVRGTFLMLRA 125
Query: 207 LLDDLKQSDYPSKRLIIVGSIT 228
L L+ S R++ + S T
Sbjct: 126 ALPHLRDS--GRGRIVNLASDT 145
|
Length = 250 |
| >gnl|CDD|235506 PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 3e-08
Identities = 38/152 (25%), Positives = 65/152 (42%), Gaps = 11/152 (7%)
Query: 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENY---TI 140
L I+TGAS G+G A A+ LA+ G +++A + E A + KE
Sbjct: 3 LMGKVAIVTGASGGIGRAIAELLAKEG-AKVVIAYD--INEEAAQELLEEIKEEGGDAIA 59
Query: 141 MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAV-YLPTAKEPTFTAEGFELSVGTNHLG 199
+ D++S + V V+ +D+LV NA + + T E ++ + N G
Sbjct: 60 VKADVSSEEDVENLVEQIVEKFGKIDILVNNAGISNFGLVTD--MTDEEWDRVIDVNLTG 117
Query: 200 HFLLSRLLLDDLKQSDYPSKRLIIVGSITGNT 231
LL+R L + + ++ + SI G
Sbjct: 118 VMLLTRYALPYMIKRKSGV--IVNISSIWGLI 147
|
Length = 247 |
| >gnl|CDD|235726 PRK06181, PRK06181, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 3e-08
Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 18/150 (12%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE-----NYTIMH- 142
VIITGAS G+G A A LA G + L A + A +A+E ++
Sbjct: 4 VIITGASEGIGRALAVRLARAG-------AQLVLAARNETRLASLAQELADHGGEALVVP 56
Query: 143 LDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 201
D++ ++ + ++ R G +D+LV NA + + + + FE + N+LG
Sbjct: 57 TDVSDAEACERLIEAAVARFGG-IDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAV 115
Query: 202 LLSRLLLDDLKQSDYPSKRLIIVGSITGNT 231
+ L LK S ++++V S+ G T
Sbjct: 116 YCTHAALPHLKASR---GQIVVVSSLAGLT 142
|
Length = 263 |
| >gnl|CDD|187597 cd05338, DHRS1_HSDL2-like_SDR_c, human dehydrogenase/reductase (SDR family) member 1 (DHRS1) and human hydroxysteroid dehydrogenase-like protein 2 (HSDL2), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 3e-08
Identities = 59/256 (23%), Positives = 91/256 (35%), Gaps = 68/256 (26%)
Query: 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE---------------RAA 128
L +TGAS G+G A A LA+ G +++A + + +
Sbjct: 1 LSGKVAFVTGASRGIGRAIALRLAKAGA-TVVVAAKTASEGDNGSAKSLPGTIEETAEEI 59
Query: 129 KSAGMAKENYTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAE 187
++AG + I+ +D+ D VR V+ T + GR LD+LV NA + E T A+
Sbjct: 60 EAAG--GQALPIV-VDVRDEDQVRALVEATVDQFGR-LDILVNNAGAIWLSLVEDT-PAK 114
Query: 188 GFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247
F+L N G +LLS+ L + ++ I+ S + G+V
Sbjct: 115 RFDLMQRVNLRGTYLLSQAALPHMVKAGQG---HILNISPPLSLRPARGDVA-------- 163
Query: 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKV-CNMLTM---QEFHRRFHEETGIAFASL 303
Y K + LT+ E R GIA SL
Sbjct: 164 --------------------------YAAGKAGMSRLTLGLAAELRRH-----GIAVNSL 192
Query: 304 YPGCIATTGLFREHIP 319
+P T E
Sbjct: 193 WPSTAIETPAATELSG 208
|
This subgroup includes human DHRS1 and human HSDL2 and related proteins. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. DHRS1 mRNA has been detected in many tissues, liver, heart, skeletal muscle, kidney and pancreas; a longer transcript is predominantly expressed in the liver , a shorter one in the heart. HSDL2 may play a part in fatty acid metabolism, as it is found in peroxisomes. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 246 |
| >gnl|CDD|226476 COG3967, DltE, Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 3e-08
Identities = 40/133 (30%), Positives = 58/133 (43%), Gaps = 14/133 (10%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTI--MHLDL 145
+++ITG +SG+GLA AK E G II + A EN I D+
Sbjct: 7 TILITGGASGIGLALAKRFLELGNTVIIC-------GRNEERLAEAKAENPEIHTEVCDV 59
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFL 202
A DS R+ V+ ++ L+VL+ NA + T E + E + TN L
Sbjct: 60 ADRDSRRELVEWLKKEYPNLNVLINNAGIQRNEDLTGAEDLL--DDAEQEIATNLLAPIR 117
Query: 203 LSRLLLDDLKQSD 215
L+ LLL L +
Sbjct: 118 LTALLLPHLLRQP 130
|
Length = 245 |
| >gnl|CDD|180984 PRK07454, PRK07454, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 5e-08
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAER---AAKSAGMAKEN 137
+ITGASSG+G ATA A A+ G W + + R E +S G+
Sbjct: 1 MSLNSMPRALITGASSGIGKATALAFAKAG-WDLALVARSQDALEALAAELRSTGVKAAA 59
Query: 138 YTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNA 172
Y+I DL++ +++ + DVL+ NA
Sbjct: 60 YSI---DLSNPEAIAPGIAELLEQFGCPDVLINNA 91
|
Length = 241 |
| >gnl|CDD|236173 PRK08177, PRK08177, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 6e-08
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 8/96 (8%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 147
+ +I GAS GLGL L E G W + R + G+ E LD+
Sbjct: 3 TALIIGASRGLGLGLVDRLLERG-WQVTATVRGPQQDTALQALPGVHIEK-----LDMND 56
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPT 183
S+ Q + R G+ D+L NA + P +
Sbjct: 57 PASLDQLLQ--RLQGQRFDLLFVNAGISGPAHQSAA 90
|
Length = 225 |
| >gnl|CDD|235924 PRK07063, PRK07063, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 6e-08
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS--AGMAKENYTIMHLDLA 146
++TGA+ G+G A A+A A G + +A D AERAA + +A + D+
Sbjct: 10 ALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVT 68
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAV 174
SV V + PLDVLV NA +
Sbjct: 69 DAASVAAAVAAAEEAFGPLDVLVNNAGI 96
|
Length = 260 |
| >gnl|CDD|187647 cd08943, R1PA_ADH_SDR_c, rhamnulose-1-phosphate aldolase/alcohol dehydrogenase, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 7e-08
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TG +SG+GLA AK LA G +++A D AE+ A++A + D+ S
Sbjct: 4 ALVTGGASGIGLAIAKRLAAEGA-AVVVADIDPEIAEKVAEAAQGGPRALGVQ-CDVTSE 61
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
V+ + LD++V NA + + T + E + S+ N GHFL+SR
Sbjct: 62 AQVQSAFEQAVLEFGGLDIVVSNAGIATSSPIAET-SLEDWNRSMDINLTGHFLVSR 117
|
This family has bifunctional proteins with an N-terminal aldolase and a C-terminal classical SDR domain. One member is identified as a rhamnulose-1-phosphate aldolase/alcohol dehydrogenase. The SDR domain has a canonical SDR glycine-rich NAD(P) binding motif and a match to the characteristic active site triad. However, it lacks an upstream active site Asn typical of SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|233590 TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 7e-08
Identities = 24/86 (27%), Positives = 38/86 (44%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGAS G+G A A LA+ G II AE + + D++
Sbjct: 1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDR 60
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAV 174
+ V+ V+ P+D+LV NA +
Sbjct: 61 EDVKAVVEEIEEELGPIDILVNNAGI 86
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 239 |
| >gnl|CDD|181298 PRK08219, PRK08219, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 9e-08
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 147
+ +ITGAS G+G A A+ LA T +++ R AER + A T +DL
Sbjct: 5 TALITGASRGIGAAIARELAPT--HTLLLGGRP---AERLDELAA-ELPGATPFPVDLTD 58
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAV 174
+++ V+ R LDVLV NA V
Sbjct: 59 PEAIAAAVEQLGR----LDVLVHNAGV 81
|
Length = 227 |
| >gnl|CDD|235816 PRK06500, PRK06500, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 1e-07
Identities = 35/132 (26%), Positives = 53/132 (40%), Gaps = 15/132 (11%)
Query: 79 QGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENY 138
QGK L ITG +SG+GL TA+ G + + RD E A G E+
Sbjct: 5 QGKTAL------ITGGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARAELG---ESA 54
Query: 139 TIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNA--AVYLPTAKEPTFTAEGFELSVGTN 196
++ D + + + + LD + NA A + P + F+ S TN
Sbjct: 55 LVIRADAGDVAAQKALAQALAEAFGRLDAVFINAGVAKFAPLED---WDEAMFDRSFNTN 111
Query: 197 HLGHFLLSRLLL 208
G + L + LL
Sbjct: 112 VKGPYFLIQALL 123
|
Length = 249 |
| >gnl|CDD|168574 PRK06484, PRK06484, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 1e-07
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 7/119 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V++TGA+ G+G A + A G +++A R+ +A A S G ++ + +D++
Sbjct: 8 VLVTGAAGGIGRAACQRFARAGD-QVVVADRNVERARERADSLG---PDHHALAMDVSDE 63
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTF--TAEGFELSVGTNHLGHFLLSR 205
+R+ + R +DVLV NA V PT T T E F N G +L++R
Sbjct: 64 AQIREGFEQLHREFGRIDVLVNNAGVTDPTMT-ATLDTTLEEFARLQAINLTGAYLVAR 121
|
Length = 520 |
| >gnl|CDD|235853 PRK06701, PRK06701, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 1e-07
Identities = 48/164 (29%), Positives = 70/164 (42%), Gaps = 14/164 (8%)
Query: 71 PAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS 130
P + + +G L+ +ITG SG+G A A A+ G I + +L A
Sbjct: 31 PQFEAPNYKGSGKLKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIV---YLDEHEDANE 86
Query: 131 AGMAKENYTIMHL----DLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFT 185
E + L D++ + V+ T R GR LD+LV NAA P T
Sbjct: 87 TKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELGR-LDILVNNAAFQYPQQSLEDIT 145
Query: 186 AEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
AE + + TN +F +++ L LKQ +I GSITG
Sbjct: 146 AEQLDKTFKTNIYSYFHMTKAALPHLKQGS----AIINTGSITG 185
|
Length = 290 |
| >gnl|CDD|235975 PRK07231, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 1e-07
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 147
I+TGASSG+G A+ A G +++ R+ AER A A + D++
Sbjct: 7 VAIVTGASSGIGEGIARRFAAEGA-RVVVTDRNEEAAERVAAEIL-AGGRAIAVAADVSD 64
Query: 148 LDSVRQFVD-TFRRSGRPLDVLVCNA 172
V V R G +D+LV NA
Sbjct: 65 EADVEAAVAAALERFGS-VDILVNNA 89
|
Length = 251 |
| >gnl|CDD|187625 cd05367, SPR-like_SDR_c, sepiapterin reductase (SPR)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 1e-07
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 2/135 (1%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+I+TGAS G+G A A+ L + G +++ + + K T + DL+
Sbjct: 2 IILTGASRGIGRALAEELLKRGSPSVVVLLARSEEPLQELKEELRPGLRVTTVKADLSDA 61
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
V Q ++ R+ D+L+ NA P +K + + N L+ LL
Sbjct: 62 AGVEQLLEAIRKLDGERDLLINNAGSLGPVSKIEFIDLDELQKYFDLNLTSPVCLTSTLL 121
Query: 209 DDLKQSDYPSKRLII 223
K+ K+ ++
Sbjct: 122 RAFKK--RGLKKTVV 134
|
Human SPR, a member of the SDR family, catalyzes the NADP-dependent reduction of sepiaptern to 7,8-dihydrobiopterin (BH2). In addition to SPRs, this subgroup also contains Bacillus cereus yueD, a benzil reductase, which catalyzes the stereospecific reduction of benzil to (S)-benzoin. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 241 |
| >gnl|CDD|237220 PRK12828, PRK12828, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-07
Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 8/143 (5%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 147
V ITG GLG ATA LA G + + R A + G+ + I +DL
Sbjct: 9 VVAITGGFGGLGRATAAWLAARGA-RVALIGRG--AAPLSQTLPGVPADALRIGGIDLVD 65
Query: 148 LDSVRQFVDTF-RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
+ R+ VD R+ GR LD LV A ++ A+ ++ G N S+
Sbjct: 66 PQAARRAVDEVNRQFGR-LDALVNIAGAFVWGTIA-DGDADTWDRMYGVNVKTTLNASKA 123
Query: 207 LLDDLKQSDYPSKRLIIVGSITG 229
L L S R++ +G+
Sbjct: 124 ALPALTAS--GGGRIVNIGAGAA 144
|
Length = 239 |
| >gnl|CDD|237187 PRK12743, PRK12743, oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-07
Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 12/89 (13%)
Query: 90 IITGASSGLGLATAKALAETG-----KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD 144
I+T + SG+G A A LA+ G WH D A+ A+ I LD
Sbjct: 6 IVTASDSGIGKACALLLAQQGFDIGITWH-----SDEEGAKETAEEVRSHGVRAEIRQLD 60
Query: 145 LASLDSVRQFVDTF-RRSGRPLDVLVCNA 172
L+ L Q +D +R GR +DVLV NA
Sbjct: 61 LSDLPEGAQALDKLIQRLGR-IDVLVNNA 88
|
Length = 256 |
| >gnl|CDD|187622 cd05364, SDR_c11, classical (c) SDR, subgroup 11 | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 2e-07
Identities = 54/234 (23%), Positives = 84/234 (35%), Gaps = 60/234 (25%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS---AGMAKENYTIMHLD 144
IITG+SSG+G TA A G + RD + E +S AG++++ ++ D
Sbjct: 5 VAIITGSSSGIGAGTAILFARLGARLALTG-RDAERLEETRQSCLQAGVSEKKILLVVAD 63
Query: 145 LASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLL 203
L + + + T + GR LD+LV NA + E E ++ + N L
Sbjct: 64 LTEEEGQDRIISTTLAKFGR-LDILVNNAGILAKGGGE-DQDIEEYDKVMNLNLRAVIYL 121
Query: 204 SRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMI 263
++L + L ++ G I +N SS+
Sbjct: 122 TKLAVPHLIKTK---------GEI-----------------------------VNVSSVA 143
Query: 264 DGGDFDGAKAYKDSKV-------CNMLTMQEFHRRFHEETGIAFASLYPGCIAT 310
G F G Y SK C L + G+ S+ PG I T
Sbjct: 144 GGRSFPGVLYYCISKAALDQFTRCTALELAPK--------GVRVNSVSPGVIVT 189
|
SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 253 |
| >gnl|CDD|235703 PRK06125, PRK06125, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-07
Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 15/135 (11%)
Query: 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS-AGMAKENYTIM 141
L V+ITGAS G+G A A+A A G H+ + RD E A + +
Sbjct: 4 HLAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAHGVDVAVH 62
Query: 142 HLDLASLDSVRQFVDTFRRSGRPLDVLVCNA----AVYLPTAKEPTFTAEGFELSVGTNH 197
LDL+S ++ Q +D+LV NA L + + A G+EL V
Sbjct: 63 ALDLSSPEAREQLA----AEAGDIDILVNNAGAIPGGGLDDVDDAAWRA-GWELKV---- 113
Query: 198 LGHFLLSRLLLDDLK 212
G+ L+RL +K
Sbjct: 114 FGYIDLTRLAYPRMK 128
|
Length = 259 |
| >gnl|CDD|235631 PRK05866, PRK05866, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 3e-07
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLK--AERAAKSAGMAKENYT 139
L +++TGASSG+G A A+ A G + +A R D L A+R ++ G A
Sbjct: 37 DLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAM---- 92
Query: 140 IMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAA 173
+ DL+ LD+V V + +D+L+ NA
Sbjct: 93 AVPCDLSDLDAVDALVADVEKRIGGVDILINNAG 126
|
Length = 293 |
| >gnl|CDD|187608 cd05350, SDR_c6, classical (c) SDR, subgroup 6 | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 3e-07
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 14/146 (9%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACR-----DFLKAERAAKSAGMAKENYTIMHL 143
V+ITGASSG+G A A+ A+ G +++ +A R D LKAE + + E L
Sbjct: 1 VLITGASSGIGRALAREFAKAG-YNVALAARRTDRLDELKAELLNPNPSVEVEI-----L 54
Query: 144 DLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLL 203
D+ + + + LD+++ NA V T+ E + TN LG +
Sbjct: 55 DVTDEERNQLVIAELEAELGGLDLVIINAGVGKGTSLGDLSFKAFRET-IDTNLLGAAAI 113
Query: 204 SRLLLDDLKQSDYPSKRLIIVGSITG 229
L + L+++ S+
Sbjct: 114 LEAALPQFRAKG--RGHLVLISSVAA 137
|
These proteins are members of the classical SDR family, with a canonical active site tetrad and a fairly well conserved typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 239 |
| >gnl|CDD|187629 cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 3e-07
Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 11/128 (8%)
Query: 86 KGSVII-TGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD 144
KG V + TG +SGLGLAT + L G +I+ D + + + +D
Sbjct: 1 KGLVAVVTGGASGLGLATVERLLAQGAKVVIL---DLPNSPGETVAKLGDNCRFV--PVD 55
Query: 145 LASLDSVRQFVDTFRRSGRPLDVLV-----CNAAVYLPTAKEPTFTAEGFELSVGTNHLG 199
+ S V+ + + LD++V AA + + E F+ + N +G
Sbjct: 56 VTSEKDVKAALALAKAKFGRLDIVVNCAGIAVAAKTYNKKGQQPHSLELFQRVINVNLIG 115
Query: 200 HFLLSRLL 207
F + RL
Sbjct: 116 TFNVIRLA 123
|
HSD10, also known as amyloid-peptide-binding alcohol dehydrogenase (ABAD), was previously identified as a L-3-hydroxyacyl-CoA dehydrogenase, HADH2. In fatty acid metabolism, HADH2 catalyzes the third step of beta-oxidation, the conversion of a hydroxyl to a keto group in the NAD-dependent oxidation of L-3-hydroxyacyl CoA. In addition to alcohol dehydrogenase and HADH2 activites, HSD10 has steroid dehydrogenase activity. Although the mechanism is unclear, HSD10 is implicated in the formation of amyloid beta-petide in the brain (which is linked to the development of Alzheimer's disease). Although HSD10 is normally concentrated in the mitochondria, in the presence of amyloid beta-peptide it translocates into the plasma membrane, where it's action may generate cytotoxic aldehydes and may lower estrogen levels through its use of 17-beta-estradiol as a substrate. HSD10 is a member of the SRD family, but differs from other SDRs by the presence of two insertions of unknown function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 252 |
| >gnl|CDD|181198 PRK08017, PRK08017, oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 5e-07
Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 15/145 (10%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 147
SV+ITG SSG+GL A L G + ++ ACR + A M +T + LDL
Sbjct: 4 SVLITGCSSGIGLEAALELKRRG-YRVLAACR------KPDDVARMNSLGFTGILLDLDD 56
Query: 148 LDSVRQFVD-TFRRSGRPLDVLVCNA--AVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 204
+SV + D + L L NA VY P + T + + E TN G L+
Sbjct: 57 PESVERAADEVIALTDNRLYGLFNNAGFGVYGPLS---TISRQQMEQQFSTNFFGTHQLT 113
Query: 205 RLLLDDLKQSDYPSKRLIIVGSITG 229
LLL + + R+++ S+ G
Sbjct: 114 MLLLPAMLP--HGEGRIVMTSSVMG 136
|
Length = 256 |
| >gnl|CDD|187598 cd05339, 17beta-HSDXI-like_SDR_c, human 17-beta-hydroxysteroid dehydrogenase XI-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 5e-07
Identities = 30/142 (21%), Positives = 60/142 (42%), Gaps = 6/142 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V+ITG SG+G A A+ G +I+ + E A + + D++
Sbjct: 2 VLITGGGSGIGRLLALEFAKRGAKVVILDINEKGAEETANNVRKAGGKVHYYK-CDVSKR 60
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPT-FTAEGFELSVGTNHLGHFLLSRLL 207
+ V + ++ + +L+ NA V + K+ E E + N L HF ++
Sbjct: 61 EEVYEAAKKIKKEVGDVTILINNAGV--VSGKKLLELPDEEIEKTFEVNTLAHFWTTKAF 118
Query: 208 LDDLKQSDYPSKRLIIVGSITG 229
L D+ + ++ ++ + S+ G
Sbjct: 119 LPDMLERNHGH--IVTIASVAG 138
|
17-beta-hydroxysteroid dehydrogenases (17betaHSD) are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. 17betaHSD type XI, a classical SDR, preferentially converts 3alpha-adiol to androsterone but not numerous other tested steroids. This subgroup of classical SDRs also includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 243 |
| >gnl|CDD|180723 PRK06841, PRK06841, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 6e-07
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 7/118 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TG +SG+G A A+ A G + + R + A +A + N + D++
Sbjct: 18 AVVTGGASGIGHAIAELFAAKGA-RVALLDRS---EDVAEVAAQLLGGNAKGLVCDVSDS 73
Query: 149 DSVRQFVDT-FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
SV V GR +D+LV +A V A + E ++ ++ N G FL+++
Sbjct: 74 QSVEAAVAAVISAFGR-IDILVNSAGV-ALLAPAEDVSEEDWDKTIDINLKGSFLMAQ 129
|
Length = 255 |
| >gnl|CDD|187617 cd05359, ChcA_like_SDR_c, 1-cyclohexenylcarbonyl_coenzyme A_reductase (ChcA)_like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 6e-07
Identities = 36/158 (22%), Positives = 70/158 (44%), Gaps = 18/158 (11%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS--AGMAKENYTIMHL--D 144
++TG S G+G A A LAE G +++ ++ K++ AA A + + + + D
Sbjct: 1 ALVTGGSRGIGKAIALRLAERG-ADVVI---NYRKSKDAAAEVAAEIEELGGKAVVVRAD 56
Query: 145 LASLDSVRQFVDTFR-RSGRPLDVLVCNAA--VYLPTAKEPTFTAEGFELSVGTNHLGHF 201
++ V + + R GR LDVLV NAA + P ++ T ++ + TN
Sbjct: 57 VSQPQDVEEMFAAVKERFGR-LDVLVSNAAAGAFRPLSE---LTPAHWDAKMNTNLKALV 112
Query: 202 LLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239
++ +++ R++ + S G+ L +
Sbjct: 113 HCAQQAAKLMRERGG--GRIVAISS-LGSIRALPNYLA 147
|
This subgroup contains classical SDR proteins, including members identified as 1-cyclohexenylcarbonyl coenzyme A reductase. ChcA of Streptomyces collinus is implicated in the final reduction step of shikimic acid to ansatrienin. ChcA shows sequence similarity to the SDR family of NAD-binding proteins, but it lacks the conserved Tyr of the characteristic catalytic site. This subgroup also contains the NADH-dependent enoyl-[acyl-carrier-protein(ACP)] reductase FabL from Bacillus subtilis. This enzyme participates in bacterial fatty acid synthesis, in type II fatty-acid synthases and catalyzes the last step in each elongation cycle. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 242 |
| >gnl|CDD|181077 PRK07677, PRK07677, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 7e-07
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
VIITG SSG+G A AK AE G ++++ R K E A + +D+ +
Sbjct: 4 VIITGGSSGMGKAMAKRFAEEG-ANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNP 62
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAA 173
+ V++ V+ +D L+ NAA
Sbjct: 63 EDVQKMVEQIDEKFGRIDALINNAA 87
|
Length = 252 |
| >gnl|CDD|180448 PRK06182, PRK06182, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 7e-07
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGASSG+G ATA+ LA G + + A R K +A + LD+
Sbjct: 6 ALVTGASSGIGKATARRLAAQG--YTVYGA-----ARRVDKMEDLASLGVHPLSLDVTDE 58
Query: 149 DSVRQFVDT-FRRSGRPLDVLVCNA 172
S++ VDT GR +DVLV NA
Sbjct: 59 ASIKAAVDTIIAEEGR-IDVLVNNA 82
|
Length = 273 |
| >gnl|CDD|187592 cd05331, DH-DHB-DH_SDR_c, 2,3 dihydro-2,3 dihydrozybenzoate dehydrogenases, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 8e-07
Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 11/143 (7%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
VI+TGA+ G+G A A+ L + G ++A + + + LD+A
Sbjct: 1 VIVTGAAQGIGRAVARHLLQAG--ATVIA------LDLPFVLLLEYGDPLRLTPLDVADA 52
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
+VR+ P+D LV A V P A +P + E +E + N G F L + +
Sbjct: 53 AAVREVCSRLLAEHGPIDALVNCAGVLRPGATDP-LSTEDWEQTFAVNVTGVFNLLQAVA 111
Query: 209 DDLKQSDYPSKRLIIVGSITGNT 231
+K D + ++ V S +
Sbjct: 112 PHMK--DRRTGAIVTVASNAAHV 132
|
2,3 dihydro-2,3 dihydrozybenzoate dehydrogenase shares the characteristics of the classical SDRs. This subgroup includes Escherichai coli EntA which catalyzes the NAD+-dependent oxidation of 2,3-dihydro-2,3-dihydroxybenzoate to 2,3-dihydroxybenzoate during biosynthesis of the siderophore Enterobactin. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 244 |
| >gnl|CDD|180774 PRK06953, PRK06953, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 8e-07
Identities = 38/112 (33%), Positives = 49/112 (43%), Gaps = 10/112 (8%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V+I GAS G+G + G W +I RD A AA A A+ + LD+A
Sbjct: 4 VLIVGASRGIGREFVRQYRADG-WRVIATARD--AAALAALQALGAE----ALALDVADP 56
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLG 199
SV ++ G LD V A VY P T T E F+ + TN LG
Sbjct: 57 ASVAGL--AWKLDGEALDAAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLG 106
|
Length = 222 |
| >gnl|CDD|187638 cd08933, RDH_SDR_c, retinal dehydrogenase-like, classical (c) SDR | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 1e-06
Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 10/131 (7%)
Query: 89 VIITGASSGLGLATAKALAETGKWHII----MACRDFLKAERAAKSAGMAKENYTIMHLD 144
VI+TG S G+G +A E G + A L++E G K + D
Sbjct: 12 VIVTGGSRGIGRGIVRAFVENGAKVVFCARGEAAGQALESELNRAGPGSCK----FVPCD 67
Query: 145 LASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLL 203
+ + ++ + T R GR +D LV NA + P +A+ F + N + +FL
Sbjct: 68 VTKEEDIKTLISVTVERFGR-IDCLVNNAGWHPPHQTTDETSAQEFRDLLNLNLISYFLA 126
Query: 204 SRLLLDDLKQS 214
S+ L L++S
Sbjct: 127 SKYALPHLRKS 137
|
These classical SDRs includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the short-chain dehydrogenases/reductase family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 261 |
| >gnl|CDD|182531 PRK10538, PRK10538, malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 1e-06
Identities = 40/152 (26%), Positives = 73/152 (48%), Gaps = 10/152 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V++TGA++G G + + G H ++A + ER + +N I LD+ +
Sbjct: 3 VLVTGATAGFGECITRRFIQQG--HKVIATGR--RQERLQELKDELGDNLYIAQLDVRNR 58
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTA--EGFELSVGTNHLGHFLLSRL 206
++ + + + R +DVLV NA + L EP A E +E + TN+ G ++R
Sbjct: 59 AAIEEMLASLPAEWRNIDVLVNNAGLAL--GLEPAHKASVEDWETMIDTNNKGLVYMTRA 116
Query: 207 LLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238
+L + + ++ +I +GS G+ GNV
Sbjct: 117 VLPGMVERNH--GHIINIGSTAGSWPYAGGNV 146
|
Length = 248 |
| >gnl|CDD|180773 PRK06949, PRK06949, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 1e-06
Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 14/149 (9%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACR--DFLKAERAA-KSAGMAKENYTIMHLDLA 146
++TGASSGLG A+ LA+ G +++A R + LK RA ++ G A ++ LD+
Sbjct: 13 LVTGASSGLGARFAQVLAQAGA-KVVLASRRVERLKELRAEIEAEGGAAH---VVSLDVT 68
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS-- 204
S++ V +D+LV N+ V T K T F+ TN G F ++
Sbjct: 69 DYQSIKAAVAHAETEAGTIDILVNNSGVS-TTQKLVDVTPADFDFVFDTNTRGAFFVAQE 127
Query: 205 ---RLLLDDLKQSD-YPSKRLIIVGSITG 229
R++ + P R+I + S+ G
Sbjct: 128 VAKRMIARAKGAGNTKPGGRIINIASVAG 156
|
Length = 258 |
| >gnl|CDD|236190 PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 1e-06
Identities = 33/117 (28%), Positives = 48/117 (41%), Gaps = 11/117 (9%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V +TGA+ G+G A A A E G +I + FL E + LD++
Sbjct: 11 VWVTGAAQGIGYAVALAFVEAGA-KVIGFDQAFLTQEDYP---------FATFVLDVSDA 60
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+V Q PLDVLV A + L + + E ++ + N G F L R
Sbjct: 61 AAVAQVCQRLLAETGPLDVLVNAAGI-LRMGATDSLSDEDWQQTFAVNAGGAFNLFR 116
|
Length = 252 |
| >gnl|CDD|181295 PRK08213, PRK08213, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-06
Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 23/158 (14%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACR--DFLKAERAA-KSAGMAKENYTIMHLDLA 146
++TG S GLGL A+AL E G ++++ R + L+ A ++ G+ D+A
Sbjct: 16 LVTGGSRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALGIDALWIAA---DVA 71
Query: 147 SLDSVRQFVD-TFRRSGRPLDVLVCNAAVY--LPTAKEPTFTAEGFELSVGTNHLGHFLL 203
+ + + T R G +D+LV NA P P E ++ + N G FLL
Sbjct: 72 DEADIERLAEETLERFG-HVDILVNNAGATWGAPAEDHPV---EAWDKVMNLNVRGLFLL 127
Query: 204 SRLLLDDLKQSDYPSK--RLIIVGSITGNTNTLAGNVP 239
S+ + K+S P R+I V S+ G L GN P
Sbjct: 128 SQAV---AKRSMIPRGYGRIINVASVAG----LGGNPP 158
|
Length = 259 |
| >gnl|CDD|213929 TIGR04316, dhbA_paeA, 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 1e-06
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAGMAKENYTIMHLDLAS 147
V++TGA+ G+G A A+ALAE G + A R+F + + LD+A
Sbjct: 1 VLVTGAAQGIGYAVARALAEAG--ARVAAVDRNFEQLLELVADLRRYGYPFATYKLDVAD 58
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+V + V R P+DVLV N A L + + E ++ + N G F +S+
Sbjct: 59 SAAVDEVVQRLEREYGPIDVLV-NVAGILRLGAIDSLSDEDWQATFAVNTFGVFNVSQ 115
|
Members of this family are 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EC 1.3.1.28), the third enzyme in the biosynthesis of 2,3-dihydroxybenzoic acid (DHB) from chorismate. The first two enzymes are isochorismate synthase (EC 5.4.4.2) and isochorismatase (EC 3.3.2.1). Synthesis is often followed by adenylation by the enzyme DHBA-AMP ligase (EC 2.7.7.58) to activate (DHB) for a non-ribosomal peptide synthetase. Length = 250 |
| >gnl|CDD|168574 PRK06484, PRK06484, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 2e-06
Identities = 38/137 (27%), Positives = 53/137 (38%), Gaps = 8/137 (5%)
Query: 69 ASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA 128
AS A SP + V ITG + G+G A A A G +++ RD AE A
Sbjct: 256 ASTAQA-PSPLAE---SPRVVAITGGARGIGRAVADRFAAAG-DRLLIIDRD---AEGAK 307
Query: 129 KSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEG 188
K A + + + D+ +V + LDVLV NA + +AE
Sbjct: 308 KLAEALGDEHLSVQADITDEAAVESAFAQIQARWGRLDVLVNNAGIAEVFKPSLEQSAED 367
Query: 189 FELSVGTNHLGHFLLSR 205
F N G F +R
Sbjct: 368 FTRVYDVNLSGAFACAR 384
|
Length = 520 |
| >gnl|CDD|187591 cd05330, cyclohexanol_reductase_SDR_c, cyclohexanol reductases, including levodione reductase, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 2e-06
Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 5/143 (3%)
Query: 89 VIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 147
V+ITG SGLGLATA LA+ G K ++ + L+A +AA ++ D++
Sbjct: 6 VLITGGGSGLGLATAVRLAKEGAKLSLVDLNEEGLEAAKAALLEIAPDAEVLLIKADVSD 65
Query: 148 LDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
V +VD T + GR +D NA + F A+ F+ V N G F
Sbjct: 66 EAQVEAYVDATVEQFGR-IDGFFNNAGIEGKQNLTEDFGADEFDKVVSINLRGVFYGLEK 124
Query: 207 LLDDLKQSDYPSKRLIIVGSITG 229
+L +++ S ++ S+ G
Sbjct: 125 VLKVMREQG--SGMIVNTASVGG 145
|
Cyloclohexanol reductases,including (6R)-2,2,6-trimethyl-1,4-cyclohexanedione (levodione) reductase of Corynebacterium aquaticum, catalyze the reversible oxidoreduction of hydroxycyclohexanone derivatives. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257 |
| >gnl|CDD|168204 PRK05717, PRK05717, oxidoreductase; Validated | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-06
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
++TGA+ G+GL A L G W +++A D ER +K A EN + +D+A
Sbjct: 14 LVTGAARGIGLGIAAWLIAEG-WQVVLADLD---RERGSKVAKALGENAWFIAMDVADEA 69
Query: 150 SVRQFV-DTFRRSGRPLDVLVCNAAVYLP 177
V V + + GR LD LVCNAA+ P
Sbjct: 70 QVAAGVAEVLGQFGR-LDALVCNAAIADP 97
|
Length = 255 |
| >gnl|CDD|187607 cd05349, BKR_2_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP]reductase (BKR), subgroup 2, classical (c) SDR | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-06
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V++TGAS GLG A A++ A G ++ R AE A AG E + D+
Sbjct: 3 VLVTGASRGLGAAIARSFAREGARVVVNYYRSTESAEAVAAEAG---ERAIAIQADVRDR 59
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNA 172
D V+ ++ + P+D +V NA
Sbjct: 60 DQVQAMIEEAKNHFGPVDTIVNNA 83
|
This subgroup includes Rhizobium sp. NGR234 FabG1. The Escherichai coli K12 BKR, FabG, belongs to a different subgroup. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 246 |
| >gnl|CDD|181721 PRK09242, PRK09242, tropinone reductase; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-06
Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 6/156 (3%)
Query: 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMH 142
L + +ITGAS G+GLA A+ G +++ RD +A +
Sbjct: 6 RLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREVHG 64
Query: 143 L--DLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGH 200
L D++ + R +D L +LV NA + +T + + TN
Sbjct: 65 LAADVSDDEDRRAILDWVEDHWDGLHILVNNAGGNI-RKAAIDYTEDEWRGIFETNLFSA 123
Query: 201 FLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236
F LSR LKQ S ++ +GS++G T+ +G
Sbjct: 124 FELSRYAHPLLKQHA--SSAIVNIGSVSGLTHVRSG 157
|
Length = 257 |
| >gnl|CDD|235925 PRK07067, PRK07067, sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-06
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHL 143
L+ ++TGA+SG+G A A+ G +++A D +K RA +A + L
Sbjct: 4 LQGKVALLTGAASGIGEAVAERYLAEGA-RVVIA--D-IKPARARLAALEIGPAAIAVSL 59
Query: 144 DLASLDSVRQFVDTFRRSGRPLDVLVCNAAVY 175
D+ DS+ + V +D+L NAA++
Sbjct: 60 DVTRQDSIDRIVAAAVERFGGIDILFNNAALF 91
|
Length = 257 |
| >gnl|CDD|187587 cd05326, secoisolariciresinol-DH_like_SDR_c, secoisolariciresinol dehydrogenase (secoisolariciresinol-DH)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-06
Identities = 38/115 (33%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
IITG +SG+G ATA+ A+ G +I D A A + + + +H D+
Sbjct: 8 IITGGASGIGEATARLFAKHGARVVIADIDDDAGQAVA---AELGDPDISFVHCDVTVEA 64
Query: 150 SVRQFVD-TFRRSGRPLDVLVCNAAVY-LPTAKEPTFTAEGFELSVGTNHLGHFL 202
VR VD R GR LD++ NA V P + E FE + N G FL
Sbjct: 65 DVRAAVDTAVARFGR-LDIMFNNAGVLGAPCYSILETSLEEFERVLDVNVYGAFL 118
|
Podophyllum secoisolariciresinol-DH is a homo tetrameric, classical SDR that catalyzes the NAD-dependent conversion of (-)-secoisolariciresinol to (-)-matairesinol via a (-)-lactol intermediate. (-)-Matairesinol is an intermediate to various 8'-lignans, including the cancer-preventive mammalian lignan, and those involved in vascular plant defense. This subgroup also includes rice momilactone A synthase which catalyzes the conversion of 3beta-hydroxy-9betaH-pimara-7,15-dien-19,6beta-olide into momilactone A, Arabidopsis ABA2 which during abscisic acid (ABA) biosynthesis, catalyzes the conversion of xanthoxin to abscisic aldehyde and, maize Tasselseed2 which participate in the maize sex determination pathway. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 249 |
| >gnl|CDD|214833 smart00822, PKS_KR, This enzymatic domain is part of bacterial polyketide synthases | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 2e-06
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE---NYTIMHL 143
G+ +ITG GLG A A+ LAE G +++ R A AA + T++
Sbjct: 1 GTYLITGGLGGLGRALARWLAERGARRLVLLSRSGPDAPGAAALLAELEAAGARVTVVAC 60
Query: 144 DLASLDSVRQFVDTFRRSGRPLDVLVCNAA 173
D+A D++ + PL ++ +AA
Sbjct: 61 DVADRDALAAVLAAIPAVEGPLTGVI-HAA 89
|
It catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. Length = 180 |
| >gnl|CDD|237219 PRK12827, PRK12827, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 3e-06
Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 9/148 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHII-----MACRDFLKAERAAKSAGMAKENYTIMHL 143
V+ITG S GLG A A LA G I+ M R A A A K +
Sbjct: 9 VLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGK--ALGLAF 66
Query: 144 DLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLL 203
D+ + R +D LD+LV NA + A + E ++ + N G F +
Sbjct: 67 DVRDFAATRAALDAGVEEFGRLDILVNNAGIA-TDAAFAELSIEEWDDVIDVNLDGFFNV 125
Query: 204 SRLLLDDLKQSDYPSKRLIIVGSITGNT 231
++ L + ++ R++ + S+ G
Sbjct: 126 TQAALPPMIRAR-RGGRIVNIASVAGVR 152
|
Length = 249 |
| >gnl|CDD|187603 cd05345, BKR_3_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 3, classical (c) SDR | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 4e-06
Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 6/124 (4%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
I+TGA SG G A+ A+ G +I + A+ A + A E + D+
Sbjct: 9 IVTGAGSGFGEGIARRFAQEGARVVIAD----INADGAERVAADIGEAAIAIQADVTKRA 64
Query: 150 SVRQFVDTFRRSGRPLDVLVCNAAV-YLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
V V+ LD+LV NA + + E F+ N +L ++ L+
Sbjct: 65 DVEAMVEAALSKFGRLDILVNNAGITHRNKPMLEV-DEEEFDRVFAVNVKSIYLSAQALV 123
Query: 209 DDLK 212
++
Sbjct: 124 PHME 127
|
This subgroup includes the putative Brucella melitensis biovar Abortus 2308 BKR, FabG, Mesorhizobium loti MAFF303099 FabG, and other classical SDRs. BKR, a member of the SDR family, catalyzes the NADPH-dependent reduction of acyl carrier protein in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of 4 elongation steps, which are repeated to extend the fatty acid chain thru the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I Fas utilizes one or 2 multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 248 |
| >gnl|CDD|219957 pfam08659, KR, KR domain | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 5e-06
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDF-LKAERAAKSAGMAKENYTIMHL-- 143
G+ ++TG GLGL A+ LAE G H+++ R E A A + + +
Sbjct: 1 GTYLVTGGLGGLGLELARWLAERGARHLVLLSRSGAPDPEAEALLAELEARGAEVTVVAC 60
Query: 144 DLASLDSVRQFVDTFRRSGRPLD 166
D++ D+VR + R G PL
Sbjct: 61 DVSDRDAVRALLAEIRADGPPLR 83
|
This enzymatic domain is part of bacterial polyketide synthases and catalyzes the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. Length = 181 |
| >gnl|CDD|235628 PRK05855, PRK05855, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 5e-06
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK---SAGMAKENYTIMHLDL 145
V++TGA SG+G TA A A G ++ + D AER A+ +AG Y +D+
Sbjct: 318 VVVTGAGSGIGRETALAFAREGA-EVVASDIDEAAAERTAELIRAAGAVAHAYR---VDV 373
Query: 146 ASLDSVRQFVDTFR-RSGRPLDVLVCNAAV 174
+ D++ F + R G P D++V NA +
Sbjct: 374 SDADAMEAFAEWVRAEHGVP-DIVVNNAGI 402
|
Length = 582 |
| >gnl|CDD|180462 PRK06198, PRK06198, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 5e-06
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHL---DL 145
++TG + GLG A A+A AE G +++ R+ AE+ A + DL
Sbjct: 9 ALVTGGTQGLGAAIARAFAERGAAGLVICGRN---AEKGEAQAAELEALGAKAVFVQADL 65
Query: 146 ASLDSVRQFVD-TFRRSGRPLDVLVCNAA 173
+ ++ R+ V GR LD LV NAA
Sbjct: 66 SDVEDCRRVVAAADEAFGR-LDALV-NAA 92
|
Length = 260 |
| >gnl|CDD|171821 PRK12937, PRK12937, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 6e-06
Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 1/124 (0%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
I+TGAS G+G A A+ LA G + A+ A + D+A
Sbjct: 9 IVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAA 68
Query: 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLD 209
+V + D + +DVLV NA V +P F E F+ ++ TN G F++ R
Sbjct: 69 AVTRLFDAAETAFGRIDVLVNNAGV-MPLGTIADFDLEDFDRTIATNLRGAFVVLREAAR 127
Query: 210 DLKQ 213
L Q
Sbjct: 128 HLGQ 131
|
Length = 245 |
| >gnl|CDD|187610 cd05352, MDH-like_SDR_c, mannitol dehydrogenase (MDH)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 6e-06
Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 9/144 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIM---ACRDFLKAERAAKSAGMAKENYTIMHLDL 145
I+TG S G+GLA A+ALAE G I+ A R KAE AK G+ + Y D+
Sbjct: 11 AIVTGGSRGIGLAIARALAEAGADVAIIYNSAPRAEEKAEELAKKYGVKTKAYKC---DV 67
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+S +SV + ++ +D+L+ NA + + +T E + + N G F ++
Sbjct: 68 SSQESVEKTFKQIQKDFGKIDILIANAGITVHKPAL-DYTYEQWNKVIDVNLNGVFNCAQ 126
Query: 206 LLLDDLKQSDYPSKRLIIVGSITG 229
K+ S LII S++G
Sbjct: 127 AAAKIFKKQGKGS--LIITASMSG 148
|
NADP-mannitol dehydrogenase catalyzes the conversion of fructose to mannitol, an acyclic 6-carbon sugar. MDH is a tetrameric member of the SDR family. This subgroup also includes various other tetrameric SDRs, including Pichia stipitis D-arabinitol dehydrogenase (aka polyol dehydrogenase), Candida albicans Sou1p, a sorbose reductase, and Candida parapsilosis (S)-specific carbonyl reductase (SCR, aka S-specific alcohol dehydrogenase) which catalyzes the enantioselective reduction of 2-hydroxyacetophenone into (S)-1-phenyl-1,2-ethanediol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Length = 252 |
| >gnl|CDD|235702 PRK06124, PRK06124, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 7e-06
Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA---KSAGMAKENYTIMHLDLA 146
++TG++ GLG A+ALA G H+++ R+ E A ++AG A E + D+A
Sbjct: 15 LVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAGGAAE---ALAFDIA 70
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAV--YLPTAKEPTFTAEGFELSVGTNHLGHFLLS 204
++V LD+LV N P A+ + T+ + LLS
Sbjct: 71 DEEAVAAAFARIDAEHGRLDILVNNVGARDRRPLAE---LDDAAIRALLETDLVAPILLS 127
Query: 205 RLLLDDLKQSDYPSKRLIIVGSITG 229
RL +K+ Y R+I + SI G
Sbjct: 128 RLAAQRMKRQGY--GRIIAITSIAG 150
|
Length = 256 |
| >gnl|CDD|187635 cd08930, SDR_c8, classical (c) SDR, subgroup 8 | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 7e-06
Identities = 34/146 (23%), Positives = 64/146 (43%), Gaps = 10/146 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYT---IMHLDL 145
++ITGA+ +G A KAL G +I+A + E+ + + + LD+
Sbjct: 5 ILITGAAGLIGKAFCKALLSAGA-RLILADINAPALEQLKEE--LTNLYKNRVIALELDI 61
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEP--TFTAEGFELSVGTNHLGHFLL 203
S +S+++ ++++ +D+L+ NA F E + + N G FL
Sbjct: 62 TSKESIKELIESYLEKFGRIDILINNAYPSPKVWGSRFEEFPYEQWNEVLNVNLGGAFLC 121
Query: 204 SRLLLDDLKQSDYPSKRLIIVGSITG 229
S+ + K+ S +I + SI G
Sbjct: 122 SQAFIKLFKKQGKGS--IINIASIYG 145
|
This subgroup has a fairly well conserved active site tetrad and domain size of the classical SDRs, but has an atypical NAD-binding motif ([ST]G[GA]XGXXG). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|181126 PRK07806, PRK07806, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 8e-06
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE---NYT 139
L + ++TG+S G+G TAK LA G H+++ R KA RA K + +
Sbjct: 3 DLPGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQ--KAPRANKVVAEIEAAGGRAS 59
Query: 140 IMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAA 173
+ DL +SV +DT R LD LV NA+
Sbjct: 60 AVGADLTDEESVAALMDTAREEFGGLDALVLNAS 93
|
Length = 248 |
| >gnl|CDD|187644 cd08940, HBDH_SDR_c, d-3-hydroxybutyrate dehydrogenase (HBDH), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 8e-06
Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 6/142 (4%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHL--DLAS 147
++TG++SG+GL A+ALA G ++ D + E AK +++ DL+
Sbjct: 6 LVTGSTSGIGLGIARALAAAGANIVLNGFGDAAEIEAVRAGL-AAKHGVKVLYHGADLSK 64
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
++ V +R +D+LV NA + A F E ++ + N F +RL
Sbjct: 65 PAAIEDMVAYAQRQFGGVDILVNNAGIQH-VAPIEDFPTEKWDAIIALNLSAVFHTTRLA 123
Query: 208 LDDLKQSDYPSKRLIIVGSITG 229
L +K+ + R+I + S+ G
Sbjct: 124 LPHMKKQGW--GRIINIASVHG 143
|
DHBDH, an NAD+ -dependent enzyme, catalyzes the interconversion of D-3-hydroxybutyrate and acetoacetate. It is a classical SDR, with the canonical NAD-binding motif and active site tetrad. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 258 |
| >gnl|CDD|187599 cd05340, Ycik_SDR_c, Escherichia coli K-12 YCIK-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 9e-06
Identities = 38/166 (22%), Positives = 65/166 (39%), Gaps = 15/166 (9%)
Query: 84 LRKGSVI-ITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA---KSAGMAKENYT 139
L +I +TGAS G+G A A G +I+ R+ K + A G + +
Sbjct: 1 LLNDRIILVTGASDGIGREAALTYARYGA-TVILLGRNEEKLRQVADHINEEGGRQPQWF 59
Query: 140 IMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLG 199
I+ L + ++ +Q + LD ++ NA + + ++ N
Sbjct: 60 ILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPLSEQNPQVWQDVXQVNVNA 119
Query: 200 HFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245
F+L++ LL L +SD S L+ S G +AN G
Sbjct: 120 TFMLTQALLPLLLKSDAGS--LVFTSSSVGRQ--------GRANWG 155
|
Escherichia coli K-12 YCIK and related proteins have a canonical classical SDR nucleotide-binding motif and active site tetrad. They are predicted oxoacyl-(acyl carrier protein/ACP) reductases. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 236 |
| >gnl|CDD|187620 cd05362, THN_reductase-like_SDR_c, tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 1e-05
Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 2/121 (1%)
Query: 86 KGSV-IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD 144
G V ++TGAS G+G A AK LA G ++ AE A + D
Sbjct: 2 AGKVALVTGASRGIGRAIAKRLARDGASVVVNYASSKAAAEEVVAEIEAAGGKAIAVQAD 61
Query: 145 LASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 204
++ V + D ++ +D+LV NA V L T + E F+ N G F +
Sbjct: 62 VSDPSQVARLFDAAEKAFGGVDILVNNAGVMLKKPIAET-SEEEFDRMFTVNTKGAFFVL 120
Query: 205 R 205
+
Sbjct: 121 Q 121
|
1,3,6,8-tetrahydroxynaphthalene reductase (4HNR) of Magnaporthe grisea and the related 1,3,8-trihydroxynaphthalene reductase (3HNR) are typical members of the SDR family containing the canonical glycine rich NAD(P)-binding site and active site tetrad, and function in fungal melanin biosynthesis. This subgroup also includes an SDR from Norway spruce that may function to protect against both biotic and abitoic stress. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 243 |
| >gnl|CDD|235739 PRK06200, PRK06200, 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 1e-05
Identities = 32/131 (24%), Positives = 51/131 (38%), Gaps = 10/131 (7%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+ITG SG+G A + G ++ AE+ A ++ ++ D+ S
Sbjct: 9 ALITGGGSGIGRALVERFLAEGARVAVLE----RSAEKLASLRQRFGDHVLVVEGDVTSY 64
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAV---YLPTAKEPTFT-AEGFELSVGTNHLGHFLL 203
++ VD T G+ LD V NA + P T F+ N G+ L
Sbjct: 65 ADNQRAVDQTVDAFGK-LDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLG 123
Query: 204 SRLLLDDLKQS 214
++ L LK S
Sbjct: 124 AKAALPALKAS 134
|
Length = 263 |
| >gnl|CDD|235935 PRK07109, PRK07109, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 38/149 (25%), Positives = 61/149 (40%), Gaps = 12/149 (8%)
Query: 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENY--- 138
K + + V+ITGAS+G+G ATA+A A G +++ R E ++
Sbjct: 4 KPIGRQVVVITGASAGVGRATARAFARRG-AKVVLLARG----EEGLEALAAEIRAAGGE 58
Query: 139 -TIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNH 197
+ D+A ++V+ D P+D V NA V + T E F +
Sbjct: 59 ALAVVADVADAEAVQAAADRAEEELGPIDTWVNNAMVTV-FGPFEDVTPEEFRRVTEVTY 117
Query: 198 LGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226
LG + L ++ D +I VGS
Sbjct: 118 LGVVHGTLAALRHMRPRDR--GAIIQVGS 144
|
Length = 334 |
| >gnl|CDD|183489 PRK12384, PRK12384, sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-05
Identities = 43/169 (25%), Positives = 64/169 (37%), Gaps = 32/169 (18%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++ G LG LAE G + + +A D + +E+AA A Y
Sbjct: 5 AVVIGGGQTLGAFLCHGLAEEG-YRVAVA--D-INSEKAANVAQEINAEYGEGMAYGFGA 60
Query: 149 DS---------VRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLG 199
D+ R + F R +D+LV NA + A F F+ S+ N +G
Sbjct: 61 DATSEQSVLALSRGVDEIFGR----VDLLVYNAGI-AKAAFITDFQLGDFDRSLQVNLVG 115
Query: 200 HFLLSRLLLDDLKQSDYPSKRLIIVGSITGN---TNTLAGNVPPKANLG 245
+FL +R RL+I I G N+ +G V K N G
Sbjct: 116 YFLCAR-----------EFSRLMIRDGIQGRIIQINSKSGKVGSKHNSG 153
|
Length = 259 |
| >gnl|CDD|187589 cd05328, 3alpha_HSD_SDR_c, alpha hydroxysteroid dehydrogenase (3alpha_HSD), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 1e-05
Identities = 38/143 (26%), Positives = 57/143 (39%), Gaps = 32/143 (22%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRD-FLKAERAAKSAGMAKENYTIMHLDLAS 147
++ITGA+SG+G ATA+ L + G I + R+ + A DL++
Sbjct: 2 IVITGAASGIGAATAELLEDAGHTVIGIDLREADVIA-------------------DLST 42
Query: 148 LDSVRQFV-DTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
+ + D R LD LV A V T L + N+ G L
Sbjct: 43 PEGRAAAIADVLARCSGVLDGLVNCAGVGGTT---------VAGLVLKVNYFGLRALMEA 93
Query: 207 LLDDLKQSDYPSKRLIIVGSITG 229
LL L++ P ++V SI G
Sbjct: 94 LLPRLRKGHGP--AAVVVSSIAG 114
|
Bacterial 3-alpha_HSD, which catalyzes the NAD-dependent oxidoreduction of hydroxysteroids, is a dimeric member of the classical SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|187615 cd05357, PR_SDR_c, pteridine reductase (PR), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 3/127 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTI-MHLDLAS 147
++TGA+ +G A A+ALA G +++ + K A N + + DL+
Sbjct: 3 ALVTGAAKRIGRAIAEALAAEGY-RVVVHYNRSEAEAQRLKDELNALRNSAVLVQADLSD 61
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
+ V R+ DVLV NA+ + PT EL G N +LL +
Sbjct: 62 FAACADLVAAAFRAFGRCDVLVNNASAFYPTPLGQGSEDAWAEL-FGINLKAPYLLIQAF 120
Query: 208 LDDLKQS 214
L S
Sbjct: 121 ARRLAGS 127
|
Pteridine reductases (PRs), members of the SDR family, catalyzes the NAD-dependent reduction of folic acid, dihydrofolate and related compounds. In Leishmania, pteridine reductase (PTR1) acts to circumvent the anti-protozoan drugs that attack dihydrofolate reductase activity. Proteins in this subgroup have an N-terminal NAD-binding motif and a YxxxK active site motif, but have an Asp instead of the usual upstream catalytic Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 234 |
| >gnl|CDD|187613 cd05355, SDR_c1, classical (c) SDR, subgroup 1 | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 48/194 (24%), Positives = 67/194 (34%), Gaps = 30/194 (15%)
Query: 71 PAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMAC----RDFLKAER 126
P S +G L+ +ITG SG+G A A A A G + + D AE
Sbjct: 11 PDFGEKSYKGSGKLKGKKALITGGDSGIGRAVAIAFAREGA-DVAINYLPEEED--DAEE 67
Query: 127 AAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTA 186
K ++ DL R V + LD+LV NAA P T
Sbjct: 68 TKKLIEEEGRKCLLIPGDLGDESFCRDLVKEVVKEFGKLDILVNNAAYQHPQESIEDITT 127
Query: 187 EGFELSVGTNHLGHFLLSRLLLDDLKQS-------------------DYPSKRLIIVGSI 227
E E + TN F L++ L LK+ DY + + G+I
Sbjct: 128 EQLEKTFRTNIFSMFYLTKAALPHLKKGSSIINTTSVTAYKGSPHLLDYAATK----GAI 183
Query: 228 TGNTNTLAGNVPPK 241
T L+ + K
Sbjct: 184 VAFTRGLSLQLAEK 197
|
These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 270 |
| >gnl|CDD|235914 PRK07041, PRK07041, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 7/116 (6%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
++ G SSG+GLA A+A A G + +A R + AA++ G T LD+
Sbjct: 1 LVVGGSSGIGLALARAFAAEGA-RVTIASRSRDRLAAAARALGGGAPVRTAA-LDITDEA 58
Query: 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+V F F +G P D +V AA P + ++ + G + ++R
Sbjct: 59 AVDAF---FAEAG-PFDHVVITAAD-TPGGPVRALPLAAAQAAMDSKFWGAYRVAR 109
|
Length = 230 |
| >gnl|CDD|135631 PRK05867, PRK05867, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 2e-05
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 2/122 (1%)
Query: 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHL 143
L +ITGAS+G+G A A E G + +A R E+ A G + +
Sbjct: 7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSGGKVVPVCC 65
Query: 144 DLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLL 203
D++ V +D +D+ VCNA + + E F+ TN G FL
Sbjct: 66 DVSQHQQVTSMLDQVTAELGGIDIAVCNAGI-ITVTPMLDMPLEEFQRLQNTNVTGVFLT 124
Query: 204 SR 205
++
Sbjct: 125 AQ 126
|
Length = 253 |
| >gnl|CDD|236094 PRK07774, PRK07774, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-05
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
I+TGA+ G+G A A+ALA G +++A + AER AK + +D++ D
Sbjct: 10 IVTGAAGGIGQAYAEALAREGA-SVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPD 68
Query: 150 SVRQFVDTFRRSGRPLDVLVCNAAVY 175
S + D + +D LV NAA+Y
Sbjct: 69 SAKAMADATVSAFGGIDYLVNNAAIY 94
|
Length = 250 |
| >gnl|CDD|181668 PRK09135, PRK09135, pteridine reductase; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 3e-05
Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 14/133 (10%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACR------DFLKAERAAKSAGMAKENYTIMH 142
+ITG + +G A A+ L G + + + D L AE A G A +
Sbjct: 9 ALITGGARRIGAAIARTLHAAG-YRVAIHYHRSAAEADALAAELNALRPGSA----AALQ 63
Query: 143 LDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 201
DL D++ + V GR LD LV NA+ + PT + T ++ +N F
Sbjct: 64 ADLLDPDALPELVAACVAAFGR-LDALVNNASSFYPTPLG-SITEAQWDDLFASNLKAPF 121
Query: 202 LLSRLLLDDLKQS 214
LS+ L++
Sbjct: 122 FLSQAAAPQLRKQ 134
|
Length = 249 |
| >gnl|CDD|187582 cd05274, KR_FAS_SDR_x, ketoreductase (KR) and fatty acid synthase (FAS), complex (x) SDRs | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 3e-05
Identities = 31/130 (23%), Positives = 50/130 (38%), Gaps = 6/130 (4%)
Query: 52 REFSQRNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGK 111
E + R G + A A + G+ +ITG GLGL A+ LA G
Sbjct: 118 DELALRGGQRLVPRLVRAPAAALELAAAPG--GLDGTYLITGGLGGLGLLVARWLAARGA 175
Query: 112 WHIIMACRDFLKAERAAKSAGMAKENYTIMHL--DLASLDSVRQFVDTFRRSGRPLDVLV 169
H+++ R AA++A + + + D+ ++ + G PL V
Sbjct: 176 RHLVLLSRRGPAPRAAARAALLRAGGARVSVVRCDVTDPAALAALLAELAA-GGPLA-GV 233
Query: 170 CNAAVYLPTA 179
+AA L A
Sbjct: 234 IHAAGVLRDA 243
|
Ketoreductase, a module of the multidomain polyketide synthase (PKS), has 2 subdomains, each corresponding to a SDR family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerize but is composed of 2 subdomains, each resembling an SDR monomer. The active site resembles that of typical SDRs, except that the usual positions of the catalytic Asn and Tyr are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular PKSs are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) FAS. In some instances, such as porcine FAS, an enoyl reductase (ER) module is inserted between the sub-domains. Fatty acid synthesis occurs via the stepwise elongation of a chain (which is attached to acyl carrier protein, ACP) with 2-carbon units. Eukaryotic systems consist of large, multifunctional synthases (type I) while bacterial, type II systems, use single function proteins. Fungal fatty acid synthase uses a dodecamer of 6 alpha and 6 beta subunits. In mammalian type FAS cycles, ketoacyl synthase forms acetoacetyl-ACP which is reduced by the NADP-dependent beta-KR, forming beta-hydroxyacyl-ACP, which is in turn dehydrated by dehydratase to a beta-enoyl intermediate, which is reduced by NADP-dependent beta-ER. Polyketide synthesis also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP-binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 375 |
| >gnl|CDD|131680 TIGR02632, RhaD_aldol-ADH, rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 3e-05
Identities = 32/128 (25%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
Query: 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA----KSAGMAKEN 137
KTL + +TG + G+G TA+ LA G H+++A + AE A G +
Sbjct: 410 KTLARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADLNLEAAEAVAAEINGQFGAGRA- 467
Query: 138 YTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNH 197
+ +D+ +V+ + +D++V NA + + E T T + ++L++
Sbjct: 468 -VALKMDVTDEQAVKAAFADVALAYGGVDIVVNNAGIATSSPFEET-TLQEWQLNLDILA 525
Query: 198 LGHFLLSR 205
G+FL++R
Sbjct: 526 TGYFLVAR 533
|
Length = 676 |
| >gnl|CDD|236209 PRK08265, PRK08265, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 4e-05
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
I+TG ++ +G A A+AL G + + D A S G E + D+
Sbjct: 10 IVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASLG---ERARFIATDITDDA 65
Query: 150 SVRQFV-DTFRRSGRPLDVLVCNAAVYL 176
++ + V R GR +D+LV A YL
Sbjct: 66 AIERAVATVVARFGR-VDILVNLACTYL 92
|
Length = 261 |
| >gnl|CDD|180771 PRK06947, PRK06947, glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 4e-05
Identities = 39/119 (32%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHI-IMACRDFLKAERAAKSAGMAKENYTIMHLDLA 146
V+ITGAS G+G ATA A G W + I RD AE A + A ++ D+A
Sbjct: 4 VVLITGASRGIGRATAVLAAARG-WSVGINYARDAAAAEETADAVRAAGGRACVVAGDVA 62
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+ V D + + LD LV NA + P+ A TN LG +L +R
Sbjct: 63 NEADVIAMFDAVQSAFGRLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAR 121
|
Length = 248 |
| >gnl|CDD|236207 PRK08261, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 4e-05
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 10/113 (8%)
Query: 60 VVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR 119
VVR A A+P D P K ++TGA+ G+G A A+ LA G H++ C
Sbjct: 190 VVRVGA-ADAAPPADWDRPLAGKV-----ALVTGAARGIGAAIAEVLARDGA-HVV--CL 240
Query: 120 DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNA 172
D + A A +A + T + LD+ + D+ + + LD++V NA
Sbjct: 241 D-VPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLDIVVHNA 292
|
Length = 450 |
| >gnl|CDD|181305 PRK08226, PRK08226, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 4e-05
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
+ITGA G+G A+ A G I++ + E+ A T + D+
Sbjct: 10 LITGALQGIGEGIARVFARHGANLILLDISP--EIEKLADELCGRGHRCTAVVADVRDPA 67
Query: 150 SVRQFVDTFRRSGRPLDVLVCNAAV 174
SV + + +D+LV NA V
Sbjct: 68 SVAAAIKRAKEKEGRIDILVNNAGV 92
|
Length = 263 |
| >gnl|CDD|182051 PRK09730, PRK09730, putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 4e-05
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 16/124 (12%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK--------SAGMAKENYTIM 141
++TG S G+G ATA LA+ G + + + ++ + AA+ + G A ++
Sbjct: 5 LVTGGSRGIGRATALLLAQEG-YTVAV---NYQQNLHAAQEVVNLITQAGGKA----FVL 56
Query: 142 HLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 201
D++ + V + PL LV NA + TAE + TN G+F
Sbjct: 57 QADISDENQVVAMFTAIDQHDEPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYF 116
Query: 202 LLSR 205
L R
Sbjct: 117 LCCR 120
|
Length = 247 |
| >gnl|CDD|181131 PRK07814, PRK07814, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 5e-05
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 6/112 (5%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
++TGA GLG A A A AE G +++A R + + A+ A ++ DLA +
Sbjct: 14 VVTGAGRGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPE 72
Query: 150 SVRQFVDT-FRRSGRPLDVLVCNAAVYLPTA---KEPTFTAEGFELSVGTNH 197
+ GR LD++V N +P A+ F +V T H
Sbjct: 73 ATAGLAGQAVEAFGR-LDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAH 123
|
Length = 263 |
| >gnl|CDD|180753 PRK06924, PRK06924, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 5e-05
Identities = 41/143 (28%), Positives = 59/143 (41%), Gaps = 10/143 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
VIITG S GLG A A L E G H+I R + + K A N T LDL +
Sbjct: 4 VIITGTSQGLGEAIANQLLEKGT-HVISISRT--ENKELTKLAEQYNSNLTFHSLDLQDV 60
Query: 149 DSVRQFVDTFRRSGRPLDV----LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 204
+ + S + +V L+ NA + P +E +V N L +L+
Sbjct: 61 HELETNFNEILSSIQEDNVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILT 120
Query: 205 RLLLDDLKQSDYP-SKRLIIVGS 226
+ K D+ KR+I + S
Sbjct: 121 STFMKHTK--DWKVDKRVINISS 141
|
Length = 251 |
| >gnl|CDD|187640 cd08935, mannonate_red_SDR_c, putative D-mannonate oxidoreductase, classical (c) SDR | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 6e-05
Identities = 42/157 (26%), Positives = 65/157 (41%), Gaps = 22/157 (14%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK---SAGMAKENYTIMHLDL 145
+ITG + LG A A+ALA+ G + R+ K ++ AK + G LD
Sbjct: 8 AVITGGTGVLGGAMARALAQAGAKVAALG-RNQEKGDKVAKEITALGGRAIALAADVLDR 66
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTA----------KEPTF---TAEGFELS 192
ASL+ R+ + + G D+L+ A P A E F EG+E
Sbjct: 67 ASLERARE--EIVAQFGTV-DILINGAGGNHPDATTDPEHYEPETEQNFFDLDEEGWEFV 123
Query: 193 VGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
N G FL S++ D+ + S +I + S+
Sbjct: 124 FDLNLNGSFLPSQVFGKDMLEQKGGS--IINISSMNA 158
|
D-mannonate oxidoreductase catalyzes the NAD-dependent interconversion of D-mannonate and D-fructuronate. This subgroup includes Bacillus subtitils UxuB/YjmF, a putative D-mannonate oxidoreductase; the B. subtilis UxuB gene is part of a putative ten-gene operon (the Yjm operon) involved in hexuronate catabolism. Escherichia coli UxuB does not belong to this subgroup. This subgroup has a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 271 |
| >gnl|CDD|187616 cd05358, GlcDH_SDR_c, glucose 1 dehydrogenase (GlcDH), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 6e-05
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 12/136 (8%)
Query: 86 KGSV-IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKEN---YTIM 141
KG V ++TGASSG+G A A LA G ++++ R K + A + K +
Sbjct: 2 KGKVALVTGASSGIGKAIAIRLATAGA-NVVVNYRS--KEDAAEEVVEEIKAVGGKAIAV 58
Query: 142 HLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPT--FTAEGFELSVGTNHLG 199
D++ + V + + LD+LV NA + + T E + + N G
Sbjct: 59 QADVSKEEDVVALFQSAIKEFGTLDILVNNAGL---QGDASSHEMTLEDWNKVIDVNLTG 115
Query: 200 HFLLSRLLLDDLKQSD 215
FL +R + ++S
Sbjct: 116 QFLCAREAIKRFRKSK 131
|
GlcDH, is a tetrameric member of the SDR family, it catalyzes the NAD(P)-dependent oxidation of beta-D-glucose to D-glucono-delta-lactone. GlcDH has a typical NAD-binding site glycine-rich pattern as well as the canonical active site tetrad (YXXXK motif plus upstream Ser and Asn). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 253 |
| >gnl|CDD|187606 cd05348, BphB-like_SDR_c, cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase (BphB)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 6e-05
Identities = 33/135 (24%), Positives = 50/135 (37%), Gaps = 16/135 (11%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFL--KAERAAKSAGMAKENYTIMHLDL 145
+ITG SGLG A + G A L AE+ A+ + + D+
Sbjct: 6 VALITGGGSGLGRALVERFVAEG------AKVAVLDRSAEKVAELRADFGDAVVGVEGDV 59
Query: 146 ASLDSVRQFVD-TFRRSGRPLDVLVCNAAVY-----LPTAKEPTFTAEGFELSVGTNHLG 199
SL + V R G+ LD + NA ++ L E E F+ N G
Sbjct: 60 RSLADNERAVARCVERFGK-LDCFIGNAGIWDYSTSLVDIPEEKL-DEAFDELFHINVKG 117
Query: 200 HFLLSRLLLDDLKQS 214
+ L ++ L L +
Sbjct: 118 YILGAKAALPALYAT 132
|
cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase (BphB) is a classical SDR, it is of particular importance for its role in the degradation of biphenyl/polychlorinated biphenyls(PCBs); PCBs are a significant source of environmental contamination. This subgroup also includes Pseudomonas putida F1 cis-biphenyl-1,2-dihydrodiol-1,2-dehydrogenase (aka cis-benzene glycol dehydrogenase, encoded by the bnzE gene), which participates in benzene metabolism. In addition it includes Pseudomonas sp. C18 putative 1,2-dihydroxy-1,2-dihydronaphthalene dehydrogenase (aka dibenzothiophene dihydrodiol dehydrogenase, encoded by the doxE gene) which participates in an upper naphthalene catabolic pathway. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257 |
| >gnl|CDD|180817 PRK07060, PRK07060, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 7e-05
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 147
SV++TGASSG+G A A ALA+ G ++ A R+ +R A G + LD+
Sbjct: 11 SVLVTGASSGIGRACAVALAQRGA-RVVAAARNAAALDRLAGETGC-----EPLRLDVGD 64
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
++R + D LV A + TAEGF+ + N G L++R
Sbjct: 65 DAAIRAALAAA----GAFDGLVNCAGIAS-LESALDMTAEGFDRVMAVNARGAALVAR 117
|
Length = 245 |
| >gnl|CDD|181349 PRK08278, PRK08278, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 8e-05
Identities = 45/151 (29%), Positives = 62/151 (41%), Gaps = 25/151 (16%)
Query: 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD----------FLKAE--RAAK 129
+L ++ ITGAS G+GLA A A G +I A AE AA
Sbjct: 2 MSLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAG 61
Query: 130 SAGMAKENYTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNA-AVYL-PTAKEPTFTA 186
+ + D+ D V V R G +D+ V NA A+ L T P
Sbjct: 62 GQALP------LVGDVRDEDQVAAAVAKAVERFGG-IDICVNNASAINLTGTEDTP---M 111
Query: 187 EGFELSVGTNHLGHFLLSRLLLDDLKQSDYP 217
+ F+L N G FL+S+ L LK+S+ P
Sbjct: 112 KRFDLMQQINVRGTFLVSQACLPHLKKSENP 142
|
Length = 273 |
| >gnl|CDD|187609 cd05351, XR_like_SDR_c, xylulose reductase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 9e-05
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 14/131 (10%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTI--MHLDLA 146
++TGA G+G AT KALA+ G + + + A + +E I + +DL+
Sbjct: 10 ALVTGAGKGIGRATVKALAKAGARVVAV-------SRTQADLDSLVRECPGIEPVCVDLS 62
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
D+ + + S P+D+LV NAAV + T E F+ S N +S++
Sbjct: 63 DWDATEEALG----SVGPVDLLVNNAAVAILQPFL-EVTKEAFDRSFDVNVRAVIHVSQI 117
Query: 207 LLDDLKQSDYP 217
+ + P
Sbjct: 118 VARGMIARGVP 128
|
Members of this subgroup include proteins identified as L-xylulose reductase (XR) and carbonyl reductase; they are members of the SDR family. XR, catalyzes the NADP-dependent reduction of L-xyulose and other sugars. Tetrameric mouse carbonyl reductase is involved in the metabolism of biogenic and xenobiotic carbonyl compounds. This subgroup also includes tetrameric chicken liver D-erythrulose reductase, which catalyzes the reduction of D-erythrulose to D-threitol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Length = 244 |
| >gnl|CDD|235933 PRK07097, PRK07097, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 9e-05
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 86 KGSV-IITGASSGLGLATAKALAETGKWHIIMACRDFL--KAERAAKSAGMAKENYTIMH 142
KG + +ITGAS G+G A AKA A+ G + L K A + G+ Y
Sbjct: 9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYV--- 65
Query: 143 LDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEP--TFTAEGFELSVGTNHLGH 200
D+ D V+ V + +D+LV NA + + P +AE F + +
Sbjct: 66 CDVTDEDGVQAMVSQIEKEVGVIDILVNNAGI---IKRIPMLEMSAEDFRQVIDIDLNAP 122
Query: 201 FLLSRLLL 208
F++S+ ++
Sbjct: 123 FIVSKAVI 130
|
Length = 265 |
| >gnl|CDD|187601 cd05343, Mgc4172-like_SDR_c, human Mgc4172-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 9e-05
Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 9/150 (6%)
Query: 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAA-KSAGMAKENYTIM 141
R ++TGAS G+G A A+AL + G + A R D ++A A +SAG
Sbjct: 4 WRGRVALVTGASVGIGAAVARALVQHGMKVVGCARRVDKIEALAAECQSAG--YPTLFPY 61
Query: 142 HLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEP--TFTAEGFELSVGTNHLG 199
DL++ + + R + +DV + NA + P EP + EG++ N L
Sbjct: 62 QCDLSNEEQILSMFSAIRTQHQGVDVCINNAGLARP---EPLLSGKTEGWKEMFDVNVLA 118
Query: 200 HFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
+ +R +K+ + +I + S++G
Sbjct: 119 LSICTREAYQSMKERNVDDGHIININSMSG 148
|
Human Mgc4172-like proteins, putative SDRs. These proteins are members of the SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|187646 cd08942, RhlG_SDR_c, RhlG and related beta-ketoacyl reductases, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 1e-04
Identities = 43/145 (29%), Positives = 62/145 (42%), Gaps = 9/145 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHL--DLA 146
V++TG S G+G A+ E G II A KAE A +A + + DL+
Sbjct: 9 VLVTGGSRGIGRMIAQGFLEAGARVIISA----RKAEACADAAEELSAYGECIAIPADLS 64
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
S + + V LDVLV NA E F G++ + N F L++
Sbjct: 65 SEEGIEALVARVAERSDRLDVLVNNAGATWGAPLE-AFPESGWDKVMDINVKSVFFLTQA 123
Query: 207 LLDDLKQ--SDYPSKRLIIVGSITG 229
LL L+ + R+I +GSI G
Sbjct: 124 LLPLLRAAATAENPARVINIGSIAG 148
|
Pseudomonas aeruginosa RhlG is an SDR-family beta-ketoacyl reductase involved in Rhamnolipid biosynthesis. RhlG is similar to but distinct from the FabG family of beta-ketoacyl-acyl carrier protein (ACP) of type II fatty acid synthesis. RhlG and related proteins are classical SDRs, with a canonical active site tetrad and glycine-rich NAD(P)-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|183773 PRK12824, PRK12824, acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 31/147 (21%), Positives = 62/147 (42%), Gaps = 17/147 (11%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS----AGMAKENYTIMHLDL 145
++TGA G+G A A+ L G + +I + AK G ++ + LD+
Sbjct: 6 LVTGAKRGIGSAIARELLNDG-YRVIAT---YFSGNDCAKDWFEEYGFTEDQVRLKELDV 61
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTF---TAEGFELSVGTNHLGHFL 202
+ + + P+D+LV NA + ++ F + + + + TN F
Sbjct: 62 TDTEECAEALAEIEEEEGPVDILVNNAGI----TRDSVFKRMSHQEWNDVINTNLNSVFN 117
Query: 203 LSRLLLDDLKQSDYPSKRLIIVGSITG 229
+++ L + + Y R+I + S+ G
Sbjct: 118 VTQPLFAAMCEQGY--GRIINISSVNG 142
|
Length = 245 |
| >gnl|CDD|235712 PRK06138, PRK06138, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 37/87 (42%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
I+TGA SG+G ATAK A G +++A RD AER A +A A D+ S
Sbjct: 8 AIVTGAGSGIGRATAKLFAREGA-RVVVADRDAEAAERVA-AAIAAGGRAFARQGDVGSA 65
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAV 174
++V VD R GR LDVLV NA
Sbjct: 66 EAVEALVDFVAARWGR-LDVLVNNAGF 91
|
Length = 252 |
| >gnl|CDD|236074 PRK07666, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 32/143 (22%), Positives = 60/143 (41%), Gaps = 14/143 (9%)
Query: 74 DVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM 133
S QGK + +ITGA G+G A A ALA+ G ++ + R + A+
Sbjct: 1 MAQSLQGK------NALITGAGRGIGRAVAIALAKEGV-NVGLLARTEENLKAVAEEVEA 53
Query: 134 AKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTF---TAEGFE 190
I D++ + V ++ + +D+L+ NA + +K F +E
Sbjct: 54 YGVKVVIATADVSDYEEVTAAIEQLKNELGSIDILINNAGI----SKFGKFLELDPAEWE 109
Query: 191 LSVGTNHLGHFLLSRLLLDDLKQ 213
+ N +G + +R +L + +
Sbjct: 110 KIIQVNLMGVYYATRAVLPSMIE 132
|
Length = 239 |
| >gnl|CDD|187639 cd08934, CAD_SDR_c, clavulanic acid dehydrogenase (CAD), classical (c) SDR | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 1e-04
Identities = 40/115 (34%), Positives = 56/115 (48%), Gaps = 12/115 (10%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLA-- 146
++TGASSG+G ATA+ALA G I A R D L+A A K ++ LD+
Sbjct: 7 LVTGASSGIGEATARALAAEGAAVAIAARRVDRLEALADELEAEGGKA--LVLELDVTDE 64
Query: 147 --SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLG 199
+V + V+ R LD+LV NA + L E T + + + TN LG
Sbjct: 65 QQVDAAVERTVEALGR----LDILVNNAGIMLLGPVEDADTTD-WTRMIDTNLLG 114
|
CAD catalyzes the NADP-dependent reduction of clavulanate-9-aldehyde to clavulanic acid, a beta-lactamase inhibitor. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 243 |
| >gnl|CDD|212497 cd11731, Lin1944_like_SDR_c, Lin1944 and related proteins, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 1e-04
Identities = 34/140 (24%), Positives = 51/140 (36%), Gaps = 33/140 (23%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+I+ GA+ +GLA A+ L+ G +I A R S+G +D+
Sbjct: 1 IIVIGATGTIGLAVAQLLSAHGH-EVITAGR----------SSG-------DYQVDITDE 42
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
S++ F + G D +V A A T F+ + + LG L R L
Sbjct: 43 ASIKAL---FEKVG-HFDAIVSTAGD-AEFAPLAELTDADFQRGLNSKLLGQINLVRHGL 97
Query: 209 DDLKQSDYPSKRLIIVGSIT 228
L GSIT
Sbjct: 98 PYLNDG----------GSIT 107
|
Lin1944 protein from Listeria Innocua is a classical SDR, it contains a glycine-rich motif similar to the canonical motif of the SDR NAD(P)-binding site. However, the typical SDR active site residues are absent in this subgroup of proteins of undetermined function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 198 |
| >gnl|CDD|180439 PRK06171, PRK06171, sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 34/124 (27%), Positives = 49/124 (39%), Gaps = 18/124 (14%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+I+TG SSG+GLA K L G + D + ENY + D++S
Sbjct: 12 IIVTGGSSGIGLAIVKELLANG---ANVVNADIHGGDGQH-------ENYQFVPTDVSSA 61
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLP----TAKEP----TFTAEGFELSVGTNHLGH 200
+ V V +D LV NA + +P K+P F+ N G
Sbjct: 62 EEVNHTVAEIIEKFGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGV 121
Query: 201 FLLS 204
FL+S
Sbjct: 122 FLMS 125
|
Length = 266 |
| >gnl|CDD|237188 PRK12745, PRK12745, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 22/85 (25%), Positives = 34/85 (40%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
++TG G+GL A+ALA G I D + + D+A L
Sbjct: 6 LVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLS 65
Query: 150 SVRQFVDTFRRSGRPLDVLVCNAAV 174
+ +D + + +D LV NA V
Sbjct: 66 AHEAMLDAAQAAWGRIDCLVNNAGV 90
|
Length = 256 |
| >gnl|CDD|180823 PRK07074, PRK07074, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 2e-04
Identities = 30/144 (20%), Positives = 56/144 (38%), Gaps = 6/144 (4%)
Query: 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDL 145
K + ++TGA+ G+G A A+ G ++ D A + G + + DL
Sbjct: 2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDIDAAALAAFADALG--DARFVPVACDL 58
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
S+ + P+DVLV NA + T T + N +L
Sbjct: 59 TDAASLAAALANAAAERGPVDVLVANAGAARAASLHDT-TPASWRADNALNLEAAYLCVE 117
Query: 206 LLLDDLKQSDYPSKRLIIVGSITG 229
+L+ + + + ++ +GS+ G
Sbjct: 118 AVLEGMLKRSRGA--VVNIGSVNG 139
|
Length = 257 |
| >gnl|CDD|188170 TIGR01832, kduD, 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 2e-04
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 77 SPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE 136
S +GK L +TGA++GLG A LAE G I+ A R E + + +
Sbjct: 2 SLEGKVAL------VTGANTGLGQGIAVGLAEAGA-DIVGAGRSEPS-ETQQQVEALGRR 53
Query: 137 NYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAV 174
++ DL+ +++++ VD+ +D+LV NA +
Sbjct: 54 FLSLT-ADLSDIEAIKALVDSAVEEFGHIDILVNNAGI 90
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 248 |
| >gnl|CDD|180411 PRK06123, PRK06123, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 2e-04
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 8/121 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS--AGMAKENYTIMHL--D 144
+IITGAS G+G ATA AE G C ++L+ AA++ + ++ + + D
Sbjct: 5 MIITGASRGIGAATALLAAERG----YAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAAD 60
Query: 145 LASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 204
+A V + + R LD LV NA + + A TN +G FL +
Sbjct: 61 VADEADVLRLFEAVDRELGRLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCA 120
Query: 205 R 205
R
Sbjct: 121 R 121
|
Length = 248 |
| >gnl|CDD|187636 cd08931, SDR_c9, classical (c) SDR, subgroup 9 | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 3e-04
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 147
++ ITGA+SG+G TA A G W + + D + AA +A + EN LD+
Sbjct: 2 AIFITGAASGIGRETALLFARNG-WFVGLYDID--EDGLAALAAELGAENVVAGALDVTD 58
Query: 148 LDSVRQFVDTF-RRSGRPLDVLVCNAAV 174
+ + F +G LD L NA V
Sbjct: 59 RAAWAAALADFAAATGGRLDALFNNAGV 86
|
This subgroup has the canonical active site tetrad and NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 227 |
| >gnl|CDD|187665 cd09805, type2_17beta_HSD-like_SDR_c, human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 7/143 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V+ITG SG G AK L G + ++ C A + + + + LD+
Sbjct: 3 VLITGCDSGFGNLLAKKLDSLG-FTVLAGCLT-KNGPGAKELRRVCSDRLRTLQLDVTKP 60
Query: 149 DSVRQFVDTFRRS--GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
+ +++ + + L LV NA + E + + + N G +++
Sbjct: 61 EQIKRAAQWVKEHVGEKGLWGLVNNAGILGFGGDEELLPMDDYRKCMEVNLFGTVEVTKA 120
Query: 207 LLDDLKQSDYPSKRLIIVGSITG 229
L L+++ R++ V S+ G
Sbjct: 121 FLPLLRRA---KGRVVNVSSMGG 140
|
17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. This classical-SDR subgroup includes the human proteins: type 2 17beta-HSD, type 6 17beta-HSD, type 2 11beta-HSD, dehydrogenase/reductase SDR family member 9, short-chain dehydrogenase/reductase family 9C member 7, 3-hydroxybutyrate dehydrogenase type 1, and retinol dehydrogenase 5. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 281 |
| >gnl|CDD|181585 PRK08936, PRK08936, glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 1/117 (0%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V+ITG S+GLG A A + +I D +A A+ A + D+
Sbjct: 10 VVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVE 69
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
V + T + LDV++ NA + + E + + TN G FL SR
Sbjct: 70 SDVVNLIQTAVKEFGTLDVMINNAGIENAVPSH-EMSLEDWNKVINTNLTGAFLGSR 125
|
Length = 261 |
| >gnl|CDD|181113 PRK07775, PRK07775, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 4e-04
Identities = 36/121 (29%), Positives = 49/121 (40%), Gaps = 9/121 (7%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++ GASSG+G ATA LA G + + + R K E LD+
Sbjct: 13 ALVAGASSGIGAATAIELAAAG-FPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDP 71
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAA-VYLPTAKEPTFTAEGFELS-----VGTNHLGHFL 202
DSV+ FV + ++VLV A Y E + E FE VG N L +
Sbjct: 72 DSVKSFVAQAEEALGEIEVLVSGAGDTYFGKLHE--ISTEQFESQVQIHLVGANRLATAV 129
Query: 203 L 203
L
Sbjct: 130 L 130
|
Length = 274 |
| >gnl|CDD|236056 PRK07576, PRK07576, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 4e-04
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V++ G +SG+ L A+A A G ++ +A R K + A A + D+
Sbjct: 12 VVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDY 70
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAA 173
+V P+DVLV AA
Sbjct: 71 AAVEAAFAQIADEFGPIDVLVSGAA 95
|
Length = 264 |
| >gnl|CDD|181518 PRK08643, PRK08643, acetoin reductase; Validated | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 4e-04
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
++TGA G+G A AK L E G + + + + A+ AA + D++ D
Sbjct: 6 LVTGAGQGIGFAIAKRLVEDG-FKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRD 64
Query: 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTN 196
V V + L+V+V NA V PT T T E F+ N
Sbjct: 65 QVFAAVRQVVDTFGDLNVVVNNAGV-APTTPIETITEEQFDKVYNIN 110
|
Length = 256 |
| >gnl|CDD|181508 PRK08628, PRK08628, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 4e-04
Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 26/156 (16%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE------NYTIMH 142
VI+TG +SG+G A + LAE G +I R+A A+E +
Sbjct: 10 VIVTGGASGIGAAISLRLAEEGAIPVIFG--------RSAPDDEFAEELRALQPRAEFVQ 61
Query: 143 LDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 201
+DL R V+ T + GR +D LV NA V E E F S+ N + ++
Sbjct: 62 VDLTDDAQCRDAVEQTVAKFGR-IDGLVNNAGVNDGVGLEA--GREAFVASLERNLIHYY 118
Query: 202 LLSRLLLDDLKQSDYPSKRLII-VGS---ITGNTNT 233
+++ L LK S+ I+ + S +TG T
Sbjct: 119 VMAHYCLPHLKA----SRGAIVNISSKTALTGQGGT 150
|
Length = 258 |
| >gnl|CDD|180761 PRK06935, PRK06935, 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 4e-04
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 86 KGSV-IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA-AKSAGMAKENYTIMHL 143
G V I+TG ++GLG A ALA+ G II R + G T + +
Sbjct: 14 DGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEG---RKVTFVQV 70
Query: 144 DLASLDSVRQFVDT-FRRSGRPLDVLVCNA 172
DL +S + V G+ +D+LV NA
Sbjct: 71 DLTKPESAEKVVKEALEEFGK-IDILVNNA 99
|
Length = 258 |
| >gnl|CDD|180371 PRK06057, PRK06057, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 5e-04
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
+ITG SG+GLATA+ LA G +++ D + AA G + D+ D
Sbjct: 11 VITGGGSGIGLATARRLAAEGA-TVVVGDIDPEAGKAAADEVGG-----LFVPTDVTDED 64
Query: 150 SVRQFVDT-FRRSGRPLDVLVCNAAVYLP 177
+V DT G +D+ NA + P
Sbjct: 65 AVNALFDTAAETYGS-VDIAFNNAGISPP 92
|
Length = 255 |
| >gnl|CDD|235910 PRK07024, PRK07024, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 5e-04
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 8/114 (7%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACR--DFLKAERAAKSAGMAKENYTIMHLDLA 146
V ITGASSG+G A A+ A G + + R D L+A A Y D+
Sbjct: 5 VFITGASSGIGQALAREYARQG-ATLGLVARRTDALQAFAARLPKAARVSVYA---ADVR 60
Query: 147 SLDSVRQFVDTF-RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLG 199
D++ F G P DV++ NA + + T E F + TN+ G
Sbjct: 61 DADALAAAAADFIAAHGLP-DVVIANAGISVGTLTEEREDLAVFREVMDTNYFG 113
|
Length = 257 |
| >gnl|CDD|188169 TIGR01829, AcAcCoA_reduct, acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 5e-04
Identities = 36/145 (24%), Positives = 69/145 (47%), Gaps = 13/145 (8%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMA-CR-DFLKAERAAKSAGMAKENYTIMHLDLAS 147
++TG G+G A + LA+ G + + A C + +AE + G ++ ++ D++S
Sbjct: 4 LVTGGMGGIGTAICQRLAKDG--YRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSS 61
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTF---TAEGFELSVGTNHLGHFLLS 204
+S + V P+DVLV NA + ++ TF T E + + TN F ++
Sbjct: 62 FESCKAAVAKVEAELGPIDVLVNNAGI----TRDATFKKMTYEQWSAVIDTNLNSVFNVT 117
Query: 205 RLLLDDLKQSDYPSKRLIIVGSITG 229
+ ++D + R+I + S+ G
Sbjct: 118 QPVID--GMRERGWGRIINISSVNG 140
|
This model represent acetoacetyl-CoA reductase, a member of the family short-chain-alcohol dehydrogenases. Note that, despite the precision implied by the enzyme name, the reaction of EC 1.1.1.36 is defined more generally as (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. Length = 242 |
| >gnl|CDD|180576 PRK06463, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 6e-04
Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 7/126 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+ITG + G+G A A+A G ++ +A+ + + D+ +
Sbjct: 10 ALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKELREKGVF------TIKCDVGNR 63
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
D V++ + + +DVLV NA + E F E + + N G + L
Sbjct: 64 DQVKKSKEVVEKEFGRVDVLVNNAGIMYLMPFE-EFDEEKYNKMIKINLNGAIYTTYEFL 122
Query: 209 DDLKQS 214
LK S
Sbjct: 123 PLLKLS 128
|
Length = 255 |
| >gnl|CDD|184025 PRK13394, PRK13394, 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 6e-04
Identities = 33/147 (22%), Positives = 63/147 (42%), Gaps = 3/147 (2%)
Query: 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMH 142
L + ++TGA+SG+G A LA G + +A + A A A +
Sbjct: 4 NLNGKTAVVTGAASGIGKEIALELARAGA-AVAIADLNQDGANAVADEINKAGGKAIGVA 62
Query: 143 LDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 202
+D+ + D+V +D +D+LV NA + + E ++ ++ + G FL
Sbjct: 63 MDVTNEDAVNAGIDKVAERFGSVDILVSNAGIQIVNPIE-NYSFADWKKMQAIHVDGAFL 121
Query: 203 LSRLLLDDLKQSDYPSKRLIIVGSITG 229
++ L + + D +I +GS+
Sbjct: 122 TTKAALKHMYKDDR-GGVVIYMGSVHS 147
|
Length = 262 |
| >gnl|CDD|187658 cd08955, KR_2_FAS_SDR_x, beta-ketoacyl reductase (KR) domain of fatty acid synthase (FAS), subgroup 2, complex (x) | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 8e-04
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE--NYTIMHLD 144
+ +ITG GLGL A+ L E G H+++ R A A + + ++ D
Sbjct: 150 ATYLITGGLGGLGLLVAEWLVERGARHLVLTGRRAPSAAARQAIAALEEAGAEVVVLAAD 209
Query: 145 LASLDSVRQFVDTFRRSGRPL 165
++ D++ + R S PL
Sbjct: 210 VSDRDALAAALAQIRASLPPL 230
|
Ketoreductase, a module of the multidomain polyketide synthase, has 2 subdomains, each corresponding to a short-chain dehydrogenases/reductase (SDR) family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerizes but is composed of 2 subdomains, each resembling an SDR monomer. In some instances, as in porcine FAS, an enoyl reductase (a Rossman fold NAD binding domain of the MDR family) module is inserted between the sub-domains. The active site resembles that of typical SDRs, except that the usual positions of the catalytic asparagine and tyrosine are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular polyketide synthases are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) fatty acid synthase. In some instances, such as porcine FAS , an enoyl reductase module is inserted between the sub-domains. Fatty acid synthesis occurs via the stepwise elongation of a chain (which is attached to acyl carrier protein, ACP) with 2-carbon units. Eukaryotic systems consists of large, multifunctional synthases (type I) while bacterial, type II systems, use single function proteins. Fungal fatty acid synthesis uses dodecamer of 6 alpha and 6 beta subunits. In mammalian type FAS cycles, ketoacyl synthase forms acetoacetyl-ACP which is reduced by the NADP-dependent beta-ketoacyl reductase (KR), forming beta-hydroxyacyl-ACP, which is in turn dehydrated by dehydratase to a beta-enoyl intermediate, which is reduced by NADP-dependent beta-enoyl reductase (ER). Polyketide syntheses also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. This subfamily includes the KR domain of the Lyngbya majuscule Jam J, -K, and #L which are encoded on the jam gene cluster and are involved in the synthesis of the Jamaicamides (neurotoxins); Lyngbya majuscule Jam P belongs to a different KR_FAS_SDR_x subfamily. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 376 |
| >gnl|CDD|168186 PRK05693, PRK05693, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 9e-04
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 147
V+ITG SSG+G A A A G + + A A +A +A +T + LD+
Sbjct: 3 VVLITGCSSGIGRALADAFKAAG--YEVWA-----TARKAEDVEALAAAGFTAVQLDVND 55
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNA 172
++ + + LDVL+ NA
Sbjct: 56 GAALARLAEELEAEHGGLDVLINNA 80
|
Length = 274 |
| >gnl|CDD|180818 PRK07062, PRK07062, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.001
Identities = 40/139 (28%), Positives = 57/139 (41%), Gaps = 18/139 (12%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TG SSG+GLAT + L E G + + RD ER A + +E + L A
Sbjct: 11 AVVTGGSSGIGLATVELLLEAGA-SVAICGRD---EERLASAEARLREKFPGARLLAARC 66
Query: 149 D-----SVRQFVDTFRRSGRPLDVLVCNAAV-YLPTAKEPTFTAEGFELSVGTNHLGHFL 202
D V F +D+LV NA + T + T A EL L +F
Sbjct: 67 DVLDEADVAAFAAAVEARFGGVDMLVNNAGQGRVSTFADTTDDAWRDEL-----ELKYFS 121
Query: 203 L---SRLLLDDLKQSDYPS 218
+ +R L L+ S S
Sbjct: 122 VINPTRAFLPLLRASAAAS 140
|
Length = 265 |
| >gnl|CDD|236399 PRK09186, PRK09186, flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.001
Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 17/150 (11%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLA 146
++ITGA +G A KA+ E G +I A D +S G + +++ LD+
Sbjct: 7 ILITGAGGLIGSALVKAILEAGG-IVIAADIDKEALNELLESLGKEFKSKKLSLVELDIT 65
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGT------NHLG- 199
+S+ +F+ +D V A Y P K + + F++S+ HLG
Sbjct: 66 DQESLEEFLSKSAEKYGKIDGAVNCA--Y-PRNK--DYGKKFFDVSLDDFNENLSLHLGS 120
Query: 200 HFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
FL S+ K+ + L+ + SI G
Sbjct: 121 SFLFSQQFAKYFKKQGGGN--LVNISSIYG 148
|
Length = 256 |
| >gnl|CDD|180802 PRK07035, PRK07035, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.001
Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 19/124 (15%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS---AGMAKENYTIMHLDLA 146
++TGAS G+G A AK LA+ G H+I++ R + A + AG E ++
Sbjct: 12 LVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEME 70
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTF-----TAEG-FELSVGTNHLGH 200
+D++ F R GR LD+LV NAA P F T G F+ +V N G+
Sbjct: 71 QIDAL--FAHIRERHGR-LDILVNNAAA------NPYFGHILDTDLGAFQKTVDVNIRGY 121
Query: 201 FLLS 204
F +S
Sbjct: 122 FFMS 125
|
Length = 252 |
| >gnl|CDD|187649 cd08945, PKR_SDR_c, Polyketide ketoreductase, classical (c) SDR | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.001
Identities = 37/142 (26%), Positives = 57/142 (40%), Gaps = 6/142 (4%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGA+SG+GLA A+ L + G + C R K A D+ S+
Sbjct: 7 LVTGATSGIGLAIARRLGKEG--LRVFVCARGEEGLATTVKELREAGVEADGRTCDVRSV 64
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSV-GTNHLGHFLLSRLL 207
+ V P+DVLV NA A+ L V TN G F +++ +
Sbjct: 65 PEIEALVAAAVARYGPIDVLVNNAG--RSGGGATAELADELWLDVVETNLTGVFRVTKEV 122
Query: 208 LDDLKQSDYPSKRLIIVGSITG 229
L + + R+I + S G
Sbjct: 123 LKAGGMLERGTGRIINIASTGG 144
|
Polyketide ketoreductase (KR) is a classical SDR with a characteristic NAD-binding pattern and active site tetrad. Aromatic polyketides include various aromatic compounds of pharmaceutical interest. Polyketide KR, part of the type II polyketide synthase (PKS) complex, is comprised of stand-alone domains that resemble the domains found in fatty acid synthase and multidomain type I PKS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 258 |
| >gnl|CDD|235713 PRK06139, PRK06139, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTI 140
L V+ITGASSG+G ATA+A A G +++A RD + A+ +
Sbjct: 2 MGPLHGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGAEVLV 60
Query: 141 MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGH 200
+ D+ D V+ G +DV V N V E T E E + TN +G+
Sbjct: 61 VPTDVTDADQVKALATQAASFGGRIDVWVNNVGVGAVGRFEET-PIEAHEQVIQTNLIGY 119
Query: 201 F 201
Sbjct: 120 M 120
|
Length = 330 |
| >gnl|CDD|187656 cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup 2, complex (x) SDRs | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 10/138 (7%)
Query: 71 PAVDVSSPQGKKTLRKGSV-IITGASSGLGLATAKALAETGKWHIIMACR---DFLKAER 126
P + L+ G V ++TG + G+G A A+ALA +++ R + +
Sbjct: 189 PLPLPAGAAASAPLKPGGVYLVTGGAGGIGRALARALARRYGARLVLLGRSPLPPEEEWK 248
Query: 127 AAKSAGMAKENYTIMH--LDLASLDSVRQFVDTFRRSGRPLDVLVCNAAV---YLPTAKE 181
A A + +++ D+ +VR+ ++ R +D ++ A V L K
Sbjct: 249 AQTLAALEALGARVLYISADVTDAAAVRRLLEKVRERYGAIDGVIHAAGVLRDALLAQKT 308
Query: 182 PTFTAEGFELSV-GTNHL 198
V G +L
Sbjct: 309 AEDFEAVLAPKVDGLLNL 326
|
Ketoreductase, a module of the multidomain polyketide synthase (PKS), has 2 subdomains, each corresponding to a SDR family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerize but is composed of 2 subdomains, each resembling an SDR monomer. The active site resembles that of typical SDRs, except that the usual positions of the catalytic Asn and Tyr are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular PKSs are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) FAS. Polyketide synthesis also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP-binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. This subfamily includes both KR domains of the Bacillus subtilis Pks J,-L, and PksM, and all three KR domains of PksN, components of the megacomplex bacillaene synthase, which synthesizes the antibiotic bacillaene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 436 |
| >gnl|CDD|187623 cd05365, 7_alpha_HSDH_SDR_c, 7 alpha-hydroxysteroid dehydrogenase (7 alpha-HSDH), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.002
Identities = 35/154 (22%), Positives = 62/154 (40%), Gaps = 16/154 (10%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKEN---YTIMHLDL 145
I+TG ++G+G A A LA+ G +I LK+E A A ++ + ++
Sbjct: 2 AIVTGGAAGIGKAIAGTLAKAGASVVIAD----LKSEGAEAVAAAIQQAGGQAIGLECNV 57
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
S + V + +LV NA P + T E FE + N F LS+
Sbjct: 58 TSEQDLEAVVKATVSQFGGITILVNNAGGGGPKPFDMPMTEEDFEWAFKLNLFSAFRLSQ 117
Query: 206 LLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239
L ++++ G+I N ++++
Sbjct: 118 LCAPHMQKAGG--------GAIL-NISSMSSENK 142
|
This bacterial subgroup contains 7 alpha-HSDHs, including Escherichia coli 7 alpha-HSDH. 7 alpha-HSDH, a member of the SDR family, catalyzes the NAD+ -dependent dehydrogenation of a hydroxyl group at position 7 of the steroid skeleton of bile acids. In humans the two primary bile acids are cholic and chenodeoxycholic acids, these are formed from cholesterol in the liver. Escherichia coli 7 alpha-HSDH dehydroxylates these bile acids in the human intestine. Mammalian 7 alpha-HSDH activity has been found in livers. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 242 |
| >gnl|CDD|187612 cd05354, SDR_c7, classical (c) SDR, subgroup 7 | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.002
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 11/102 (10%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V++TGA+ G+G A ++L G + A RD A G + + LD+
Sbjct: 6 VLVTGANRGIGKAFVESLLAHGAKKVYAAVRDPGSAAHLVAKYG---DKVVPLRLDVTDP 62
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFE 190
+S++ + +DV++ NA V K T EG
Sbjct: 63 ESIK----AAAAQAKDVDVVINNAGV----LKPATLLEEGAL 96
|
These proteins are members of the classical SDR family, with a canonical active site triad (and also an active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 235 |
| >gnl|CDD|181517 PRK08642, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.002
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHL 143
+ + +V++TG S GLG A A+A A G ++ + + A A + +
Sbjct: 3 ISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQS---EDAAEALADELGDRAIALQA 59
Query: 144 DLASLDSVRQFVDTFR-RSGRPLDVLVCNAAV 174
D+ + V+ T G+P+ +V NA
Sbjct: 60 DVTDREQVQAMFATATEHFGKPITTVVNNALA 91
|
Length = 253 |
| >gnl|CDD|180446 PRK06180, PRK06180, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.002
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
+ITG SSG G A A+A G ++ R +A RA A + LD+ D
Sbjct: 8 LITGVSSGFGRALAQAALAAG-HRVVGTVRS--EAARADFEAL-HPDRALARLLDVTDFD 63
Query: 150 SVRQFVDTFRRSGRPLDVLVCNA 172
++ V + P+DVLV NA
Sbjct: 64 AIDAVVADAEATFGPIDVLVNNA 86
|
Length = 277 |
| >gnl|CDD|235794 PRK06398, PRK06398, aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 0.003
Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 15/136 (11%)
Query: 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHL 143
L+ I+TG S G+G A L E G I +F K +Y +
Sbjct: 4 LKDKVAIVTGGSQGIGKAVVNRLKEEGSNVI-----NF-----DIKEPSYNDVDY--FKV 51
Query: 144 DLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 202
D+++ + V + +D + GR +D+LV NA + A E + + N G FL
Sbjct: 52 DVSNKEQVIKGIDYVISKYGR-IDILVNNAGIESYGAIHAVEEDEWDRI-INVNVNGIFL 109
Query: 203 LSRLLLDDLKQSDYPS 218
+S+ + + + D
Sbjct: 110 MSKYTIPYMLKQDKGV 125
|
Length = 258 |
| >gnl|CDD|181159 PRK07890, PRK07890, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.003
Identities = 30/131 (22%), Positives = 46/131 (35%), Gaps = 11/131 (8%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V+++G GLG A A G +++A R + + A + D+
Sbjct: 8 VVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDE 66
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLP----TAKEPTFTAEGFELSVGTNHLGHFLL 203
D V R GR +D LV NA + EL+V LG L
Sbjct: 67 DQCANLVALALERFGR-VDALVNNAFRVPSMKPLADADFAHWRAVIELNV----LGTLRL 121
Query: 204 SRLLLDDLKQS 214
++ L +S
Sbjct: 122 TQAFTPALAES 132
|
Length = 258 |
| >gnl|CDD|132250 TIGR03206, benzo_BadH, 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 0.003
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE---NYTI 140
L+ + I+TG G+G AT + AE G +A D L E A K A + N
Sbjct: 1 LKDKTAIVTGGGGGIGGATCRRFAEEGA---KVAVFD-LNREAAEKVAADIRAKGGNAQA 56
Query: 141 MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNA 172
D+ DSV V ++ P+DVLV NA
Sbjct: 57 FACDITDRDSVDTAVAAAEQALGPVDVLVNNA 88
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. Length = 250 |
| >gnl|CDD|187648 cd08944, SDR_c12, classical (c) SDR, subgroup 12 | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.003
Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 4/117 (3%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
I+TGA +G+G A A LA G +++A D A+ + D+
Sbjct: 6 AIVTGAGAGIGAACAARLAREGA-RVVVADIDGGAAQAVVAQIAGGALALRV---DVTDE 61
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
V + LD+LV NA T ++ ++ N G FL R
Sbjct: 62 QQVAALFERAVEEFGGLDLLVNNAGAMHLTPAIIDTDLAVWDQTMAINLRGTFLCCR 118
|
These are classical SDRs, with the canonical active site tetrad and glycine-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 246 |
| >gnl|CDD|181225 PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.003
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 13/104 (12%)
Query: 74 DVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG- 132
D+ S GK ++ITG++ G+G A LAE G II + AERA +
Sbjct: 3 DLFSLAGKN------ILITGSAQGIGFLLATGLAEYGAEIIIND----ITAERAELAVAK 52
Query: 133 MAKENYTI--MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAV 174
+ +E ++ V ++ + P+DVL+ NA +
Sbjct: 53 LRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIGPIDVLINNAGI 96
|
Length = 254 |
| >gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 38.4 bits (89), Expect = 0.004
Identities = 23/139 (16%), Positives = 41/139 (29%), Gaps = 24/139 (17%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+++TG + +G + L G + R + LDL
Sbjct: 3 ILVTGGAGFIGSHLVERLLAAGHDVRGLD--------RLRDGLDPLLSGVEFVVLDLTDR 54
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
D V + D ++ AA + AE + N G + LL
Sbjct: 55 DLVDELAKGVP------DAVIHLAAQSSVPDSNASDPAEFLD----VNVDG----TLNLL 100
Query: 209 DDLKQSDYPSKRLIIVGSI 227
+ + KR + S+
Sbjct: 101 EAARA--AGVKRFVFASSV 117
|
Length = 314 |
| >gnl|CDD|181139 PRK07832, PRK07832, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.004
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMH----LD 144
+TGA+SG+G ATA LA G + + RD A+ A++ A+ + LD
Sbjct: 3 CFVTGAASGIGRATALRLAAQGA-ELFLTDRD---ADGLAQTVADARALGGTVPEHRALD 58
Query: 145 LASLDSVRQFVDTFRRSGRPLDVLVCNAAV 174
++ D+V F + +DV++ A +
Sbjct: 59 ISDYDAVAAFAADIHAAHGSMDVVMNIAGI 88
|
Length = 272 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 350 | |||
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 100.0 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 100.0 | |
| KOG1200 | 256 | consensus Mitochondrial/plastidial beta-ketoacyl-A | 100.0 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 100.0 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 100.0 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 100.0 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 100.0 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 100.0 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 100.0 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 100.0 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 100.0 | |
| PLN00015 | 308 | protochlorophyllide reductase | 100.0 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 100.0 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 100.0 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 100.0 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 100.0 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 100.0 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 100.0 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 100.0 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 100.0 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 100.0 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 100.0 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 100.0 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 100.0 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 100.0 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 100.0 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 100.0 | |
| PRK08643 | 256 | acetoin reductase; Validated | 100.0 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 100.0 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 100.0 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 100.0 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 100.0 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 100.0 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 100.0 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 100.0 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 100.0 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 100.0 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| KOG1208 | 314 | consensus Dehydrogenases with different specificit | 100.0 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 100.0 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 100.0 | |
| KOG4169 | 261 | consensus 15-hydroxyprostaglandin dehydrogenase an | 100.0 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 100.0 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05717 | 255 | oxidoreductase; Validated | 100.0 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 100.0 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 100.0 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 100.0 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 100.0 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 100.0 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 100.0 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 100.0 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 100.0 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 100.0 | |
| KOG1207 | 245 | consensus Diacetyl reductase/L-xylulose reductase | 100.0 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 100.0 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 100.0 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 100.0 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 100.0 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 100.0 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 100.0 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 99.98 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 99.98 | |
| KOG1611 | 249 | consensus Predicted short chain-type dehydrogenase | 99.98 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 99.98 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 99.98 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.98 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.98 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 99.98 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 99.97 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 99.97 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 99.97 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.97 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.97 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 99.97 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 99.97 | |
| KOG1610 | 322 | consensus Corticosteroid 11-beta-dehydrogenase and | 99.97 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.97 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 99.97 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.97 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.97 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 99.97 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 99.97 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.97 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.97 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 99.97 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 99.97 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 99.97 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 99.97 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.97 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.97 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.97 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.97 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 99.97 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 99.97 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.97 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 99.97 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.96 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.96 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.96 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.96 | |
| KOG1210 | 331 | consensus Predicted 3-ketosphinganine reductase [S | 99.96 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.96 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 99.96 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 99.96 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 99.96 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.96 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.96 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.96 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.96 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.96 | |
| KOG1199 | 260 | consensus Short-chain alcohol dehydrogenase/3-hydr | 99.96 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.95 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.95 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.95 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.95 | |
| KOG1204 | 253 | consensus Predicted dehydrogenase [Secondary metab | 99.94 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.94 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 99.94 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 99.93 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 99.93 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.91 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.91 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 99.9 | |
| KOG1478 | 341 | consensus 3-keto sterol reductase [Lipid transport | 99.89 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 99.87 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 99.85 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 99.85 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 99.84 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.84 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 99.82 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 99.81 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 99.8 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.79 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 99.79 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 99.79 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 99.79 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 99.78 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 99.78 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 99.77 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 99.76 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 99.76 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.75 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 99.74 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 99.74 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 99.73 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 99.73 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 99.73 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 99.71 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 99.71 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 99.69 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 99.69 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 99.68 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 99.67 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 99.67 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 99.65 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.65 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 99.64 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 99.63 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 99.63 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.59 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 99.57 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 99.56 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 99.56 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 99.55 | |
| KOG1371 | 343 | consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo | 99.55 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.54 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 99.53 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 99.53 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 99.53 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 99.52 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 99.51 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 99.49 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 99.46 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 99.46 | |
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 99.39 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 99.39 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 99.38 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 99.38 | |
| PF08643 | 299 | DUF1776: Fungal family of unknown function (DUF177 | 99.32 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 99.32 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 99.3 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.29 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 99.28 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.28 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 99.23 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 99.22 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 99.14 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 99.14 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 99.07 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.06 | |
| KOG0747 | 331 | consensus Putative NAD+-dependent epimerases [Carb | 99.05 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 99.04 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 99.03 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.03 | |
| COG4982 | 866 | 3-oxoacyl-[acyl-carrier protein] | 98.88 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 98.87 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 98.86 | |
| KOG4022 | 236 | consensus Dihydropteridine reductase DHPR/QDPR [Am | 98.86 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 98.78 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 98.76 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 98.71 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 98.66 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 98.58 | |
| KOG1221 | 467 | consensus Acyl-CoA reductase [Lipid transport and | 98.53 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 98.52 | |
| KOG1431 | 315 | consensus GDP-L-fucose synthetase [Carbohydrate tr | 98.48 | |
| KOG2865 | 391 | consensus NADH:ubiquinone oxidoreductase, NDUFA9/3 | 98.43 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 98.41 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 98.41 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 98.3 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 98.28 | |
| KOG1372 | 376 | consensus GDP-mannose 4,6 dehydratase [Carbohydrat | 98.27 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 98.21 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 98.19 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.13 | |
| KOG2774 | 366 | consensus NAD dependent epimerase [General functio | 98.12 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 98.12 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 98.11 | |
| PLN00106 | 323 | malate dehydrogenase | 97.97 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.93 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 97.87 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.78 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 97.78 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 97.71 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 97.6 | |
| KOG2733 | 423 | consensus Uncharacterized membrane protein [Functi | 97.57 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 97.53 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 97.48 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.38 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 97.26 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 97.23 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.21 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 97.21 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 97.18 | |
| cd08253 | 325 | zeta_crystallin Zeta-crystallin with NADP-dependen | 97.17 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 97.13 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 97.12 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 97.11 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 97.06 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 97.03 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 97.01 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 96.96 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 96.9 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 96.88 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 96.82 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 96.78 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 96.77 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 96.75 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 96.74 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 96.71 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 96.7 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 96.68 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 96.66 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 96.65 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 96.64 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.63 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 96.6 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 96.54 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 96.54 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 96.53 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 96.5 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 96.48 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 96.47 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 96.47 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 96.46 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 96.44 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 96.44 | |
| cd05276 | 323 | p53_inducible_oxidoreductase PIG3 p53-inducible qu | 96.4 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 96.35 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 96.35 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 96.33 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 96.31 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 96.29 | |
| cd05288 | 329 | PGDH Prostaglandin dehydrogenases. Prostaglandins | 96.29 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 96.29 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 96.2 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 96.19 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 96.19 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 96.18 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 96.15 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 96.13 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 96.13 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 96.12 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 96.06 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 96.02 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 96.0 | |
| PRK08223 | 287 | hypothetical protein; Validated | 95.91 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 95.9 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 95.84 | |
| TIGR02824 | 325 | quinone_pig3 putative NAD(P)H quinone oxidoreducta | 95.69 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 95.67 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 95.67 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 95.66 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 95.51 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 95.51 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 95.43 | |
| COG3007 | 398 | Uncharacterized paraquat-inducible protein B [Func | 95.42 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 95.4 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 95.37 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 95.35 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 95.35 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 95.35 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 95.33 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.3 | |
| KOG1197 | 336 | consensus Predicted quinone oxidoreductase [Energy | 95.3 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 95.28 | |
| cd08268 | 328 | MDR2 Medium chain dehydrogenases/reductase (MDR)/z | 95.25 | |
| PF12242 | 78 | Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2 | 95.24 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 95.2 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 95.2 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.2 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 95.15 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 95.12 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 95.1 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 95.1 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 95.09 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 95.06 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 95.03 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 95.03 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 94.97 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 94.91 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 94.91 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 94.91 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 94.86 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 94.85 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 94.85 | |
| PRK07411 | 390 | hypothetical protein; Validated | 94.82 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 94.8 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 94.78 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 94.77 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 94.73 | |
| cd08244 | 324 | MDR_enoyl_red Possible enoyl reductase. Member ide | 94.7 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 94.67 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 94.62 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 94.61 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 94.6 | |
| cd08292 | 324 | ETR_like_2 2-enoyl thioester reductase (ETR) like | 94.51 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 94.5 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 94.48 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 94.46 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 94.45 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 94.44 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 94.43 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 94.4 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 94.36 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 94.32 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 94.29 | |
| cd01488 | 291 | Uba3_RUB Ubiquitin activating enzyme (E1) subunit | 94.25 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 94.22 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 94.2 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 94.18 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 94.13 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 94.04 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 94.04 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 94.03 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 94.02 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 94.0 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 93.99 | |
| cd08243 | 320 | quinone_oxidoreductase_like_1 Quinone oxidoreducta | 93.98 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 93.94 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 93.93 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 93.9 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 93.87 | |
| cd08289 | 326 | MDR_yhfp_like Yhfp putative quinone oxidoreductase | 93.86 | |
| cd08299 | 373 | alcohol_DH_class_I_II_IV class I, II, IV alcohol d | 93.85 | |
| PTZ00354 | 334 | alcohol dehydrogenase; Provisional | 93.81 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 93.8 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 93.76 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 93.75 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.73 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 93.72 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 93.68 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 93.68 | |
| cd05282 | 323 | ETR_like 2-enoyl thioester reductase-like. 2-enoyl | 93.68 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.67 | |
| cd08290 | 341 | ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi | 93.61 | |
| PLN02494 | 477 | adenosylhomocysteinase | 93.6 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 93.59 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 93.57 | |
| cd08291 | 324 | ETR_like_1 2-enoyl thioester reductase (ETR) like | 93.57 | |
| cd08241 | 323 | QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t | 93.55 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 93.5 | |
| cd05286 | 320 | QOR2 Quinone oxidoreductase (QOR). Quinone oxidore | 93.5 | |
| cd08250 | 329 | Mgc45594_like Mgc45594 gene product and other MDR | 93.41 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 93.34 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 93.33 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 93.24 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 93.23 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 93.2 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 93.16 | |
| cd08248 | 350 | RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu | 93.16 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 93.16 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 93.11 | |
| cd08297 | 341 | CAD3 Cinnamyl alcohol dehydrogenases (CAD). These | 93.07 | |
| COG2130 | 340 | Putative NADP-dependent oxidoreductases [General f | 93.05 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 93.0 | |
| KOG2013 | 603 | consensus SMT3/SUMO-activating complex, catalytic | 92.96 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.94 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 92.91 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 92.9 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 92.79 | |
| TIGR01751 | 398 | crot-CoA-red crotonyl-CoA reductase. The enzyme mo | 92.77 | |
| KOG1196 | 343 | consensus Predicted NAD-dependent oxidoreductase [ | 92.75 | |
| PLN02928 | 347 | oxidoreductase family protein | 92.71 | |
| PLN02602 | 350 | lactate dehydrogenase | 92.67 | |
| cd08246 | 393 | crotonyl_coA_red crotonyl-CoA reductase. Crotonyl- | 92.65 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 92.63 | |
| COG5322 | 351 | Predicted dehydrogenase [General function predicti | 92.62 |
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=288.83 Aligned_cols=223 Identities=24% Similarity=0.308 Sum_probs=192.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|+++|||||+|||.++|+.|++.|+ +|++++|..++++++.+++.. .++.++..||+|.++++.+++.+.+++
T Consensus 3 ~~~~kv~lITGASSGiG~A~A~~l~~~G~-~vvl~aRR~drL~~la~~~~~--~~~~~~~~DVtD~~~~~~~i~~~~~~~ 79 (246)
T COG4221 3 TLKGKVALITGASSGIGEATARALAEAGA-KVVLAARREERLEALADEIGA--GAALALALDVTDRAAVEAAIEALPEEF 79 (246)
T ss_pred CCCCcEEEEecCcchHHHHHHHHHHHCCC-eEEEEeccHHHHHHHHHhhcc--CceEEEeeccCCHHHHHHHHHHHHHhh
Confidence 45789999999999999999999999995 999999999999999999875 578999999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|+||||||.... .++.+.+.++|+.++++|+.|.++.+++++|.|.+++ +|.|||+||++|..
T Consensus 80 g~iDiLvNNAGl~~g-~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~--~G~IiN~~SiAG~~----------- 145 (246)
T COG4221 80 GRIDILVNNAGLALG-DPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERK--SGHIINLGSIAGRY----------- 145 (246)
T ss_pred CcccEEEecCCCCcC-ChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcC--CceEEEeccccccc-----------
Confidence 999999999999765 8899999999999999999999999999999999987 68999999999985
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
++++...|+++|+++..|++.|+.|+ ..++|||.+|+||.|.|+.+..-..+ .
T Consensus 146 ------------------------~y~~~~vY~ATK~aV~~fs~~LR~e~-~g~~IRVt~I~PG~v~~~~~s~v~~~--g 198 (246)
T COG4221 146 ------------------------PYPGGAVYGATKAAVRAFSLGLRQEL-AGTGIRVTVISPGLVETTEFSTVRFE--G 198 (246)
T ss_pred ------------------------cCCCCccchhhHHHHHHHHHHHHHHh-cCCCeeEEEecCceecceecccccCC--c
Confidence 36788999999999999999999999 57799999999999987644221111 0
Q ss_pred hhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 323 LLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
-.......+.....++|+++|+.|+++
T Consensus 199 ~~~~~~~~y~~~~~l~p~dIA~~V~~~ 225 (246)
T COG4221 199 DDERADKVYKGGTALTPEDIAEAVLFA 225 (246)
T ss_pred hhhhHHHHhccCCCCCHHHHHHHHHHH
Confidence 001111112334578999999998764
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=285.83 Aligned_cols=218 Identities=22% Similarity=0.277 Sum_probs=189.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhcc-CCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~-~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
.+.++++||||||+|||+++|+.|+++| ++|++++|+.++++++.++++. .+.++.++.+|++++++++++.+++.++
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g-~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~ 81 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRG-YNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKER 81 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhc
Confidence 3578899999999999999999999999 6999999999999999999975 4678999999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
.+.||+||||||.... +++.+.++++.++++++|+.+...|+++++|.|.+++ .|.||||+|.+|...
T Consensus 82 ~~~IdvLVNNAG~g~~-g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~--~G~IiNI~S~ag~~p--------- 149 (265)
T COG0300 82 GGPIDVLVNNAGFGTF-GPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERG--AGHIINIGSAAGLIP--------- 149 (265)
T ss_pred CCcccEEEECCCcCCc-cchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CceEEEEechhhcCC---------
Confidence 8899999999999654 7899999999999999999999999999999999987 589999999999863
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.|..+.|++||+++.+|+++|+.|+ +.+||+|.+|+||+|.|+.+..+....
T Consensus 150 --------------------------~p~~avY~ATKa~v~~fSeaL~~EL-~~~gV~V~~v~PG~~~T~f~~~~~~~~- 201 (265)
T COG0300 150 --------------------------TPYMAVYSATKAFVLSFSEALREEL-KGTGVKVTAVCPGPTRTEFFDAKGSDV- 201 (265)
T ss_pred --------------------------CcchHHHHHHHHHHHHHHHHHHHHh-cCCCeEEEEEecCcccccccccccccc-
Confidence 3678999999999999999999999 778999999999999998653211111
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhcc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLA 347 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~ 347 (350)
........+++|+++|+..+
T Consensus 202 ------~~~~~~~~~~~~~~va~~~~ 221 (265)
T COG0300 202 ------YLLSPGELVLSPEDVAEAAL 221 (265)
T ss_pred ------ccccchhhccCHHHHHHHHH
Confidence 11111234678888887654
|
|
| >KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-40 Score=266.91 Aligned_cols=225 Identities=21% Similarity=0.206 Sum_probs=186.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+..|.++||||++|||+++++.|+++|+ +|++.+++....++....+..++ +...+.||+++.++++..+++..+.+
T Consensus 11 r~~sk~~~vtGg~sGIGrAia~~la~~Ga-rv~v~dl~~~~A~ata~~L~g~~-~h~aF~~DVS~a~~v~~~l~e~~k~~ 88 (256)
T KOG1200|consen 11 RLMSKVAAVTGGSSGIGRAIAQLLAKKGA-RVAVADLDSAAAEATAGDLGGYG-DHSAFSCDVSKAHDVQNTLEEMEKSL 88 (256)
T ss_pred HHhcceeEEecCCchHHHHHHHHHHhcCc-EEEEeecchhhHHHHHhhcCCCC-ccceeeeccCcHHHHHHHHHHHHHhc
Confidence 45778999999999999999999999996 89999998888888888887664 45678999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
|++++||||||+..+ ..+..++.++|+.++.+|+.|.|+++|++.+.|......+++|||+||+.|..|+
T Consensus 89 g~psvlVncAGItrD-~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVGkiGN--------- 158 (256)
T KOG1200|consen 89 GTPSVLVNCAGITRD-GLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVGKIGN--------- 158 (256)
T ss_pred CCCcEEEEcCccccc-cceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhccccc---------
Confidence 999999999999876 6777899999999999999999999999999865544335699999999999875
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
-++..|++||+++.+|+++.++|+ ++++||||+|+||+|.|||...-...+
T Consensus 159 --------------------------~GQtnYAAsK~GvIgftktaArEl-a~knIrvN~VlPGFI~tpMT~~mp~~v-- 209 (256)
T KOG1200|consen 159 --------------------------FGQTNYAASKGGVIGFTKTAAREL-ARKNIRVNVVLPGFIATPMTEAMPPKV-- 209 (256)
T ss_pred --------------------------ccchhhhhhcCceeeeeHHHHHHH-hhcCceEeEeccccccChhhhhcCHHH--
Confidence 489999999999999999999999 778999999999999999863311110
Q ss_pred hhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 323 LLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
......-.+..++-.+||+|+.+++|
T Consensus 210 -~~ki~~~iPmgr~G~~EevA~~V~fL 235 (256)
T KOG1200|consen 210 -LDKILGMIPMGRLGEAEEVANLVLFL 235 (256)
T ss_pred -HHHHHccCCccccCCHHHHHHHHHHH
Confidence 00011111124556777777776654
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=281.99 Aligned_cols=217 Identities=18% Similarity=0.263 Sum_probs=191.4
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
..+.+|+++|||||++|||+++|.+|+++|+ ++++.+.+.+..++..++++..| +++.+.||++|.+++.+..+++++
T Consensus 33 ~k~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g-~~~~y~cdis~~eei~~~a~~Vk~ 110 (300)
T KOG1201|consen 33 LKSVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG-EAKAYTCDISDREEIYRLAKKVKK 110 (300)
T ss_pred hhhccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC-ceeEEEecCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999999999997 99999999988888888887665 899999999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
+.|++|+||||||+... .++.+.+.+++++++++|+.|+++.+++|+|.|.+.+ .|+||+++|++|..+
T Consensus 111 e~G~V~ILVNNAGI~~~-~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~--~GHIV~IaS~aG~~g-------- 179 (300)
T KOG1201|consen 111 EVGDVDILVNNAGIVTG-KKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENN--NGHIVTIASVAGLFG-------- 179 (300)
T ss_pred hcCCceEEEeccccccC-CCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcC--CceEEEehhhhcccC--------
Confidence 99999999999999754 7777899999999999999999999999999999876 589999999999976
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhc--CCCCcEEEEeeCCcccCCcccccch
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFH--EETGIAFASLYPGCIATTGLFREHI 318 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~~gi~v~~v~PG~v~t~~~~~~~~ 318 (350)
.++...|++||+|+.+|.+++..|++ ...||+..+|+|+.++|.|+.. ..
T Consensus 180 ---------------------------~~gl~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv~P~~i~Tgmf~~-~~ 231 (300)
T KOG1201|consen 180 ---------------------------PAGLADYCASKFAAVGFHESLSMELRALGKDGIKTTLVCPYFINTGMFDG-AT 231 (300)
T ss_pred ---------------------------CccchhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEEeeeeccccccCC-CC
Confidence 36788999999999999999999986 4578999999999999987754 33
Q ss_pred hhHHhhhhhhHHhhhcCccchhhhhhhccc
Q 018819 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
|... + ....+|+++|++|++
T Consensus 232 ~~~~-----l-----~P~L~p~~va~~Iv~ 251 (300)
T KOG1201|consen 232 PFPT-----L-----APLLEPEYVAKRIVE 251 (300)
T ss_pred CCcc-----c-----cCCCCHHHHHHHHHH
Confidence 3211 1 224688888887764
|
|
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=282.05 Aligned_cols=192 Identities=27% Similarity=0.343 Sum_probs=170.5
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccC-CC-ceEEEEccCCCHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-KE-NYTIMHLDLASLDSVRQFVDTF 158 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~-~~-~v~~~~~Dvs~~~~v~~~~~~~ 158 (350)
+..+.||+++|||||+|||.++|++|+++|+ +++++.|..++++...+++++. .. ++++++||++|.++++++++++
T Consensus 7 ~e~~~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~ 85 (282)
T KOG1205|consen 7 MERLAGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWA 85 (282)
T ss_pred HHHhCCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHH
Confidence 4467999999999999999999999999996 8888888888888776666433 22 5999999999999999999999
Q ss_pred HHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCC
Q 018819 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (350)
Q Consensus 159 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (350)
..++|++|+||||||+.. ....++.+.+++..+|++|++|+.+++++++|+|++++ +|+||++||++|..+
T Consensus 86 ~~~fg~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~--~GhIVvisSiaG~~~------ 156 (282)
T KOG1205|consen 86 IRHFGRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN--DGHIVVISSIAGKMP------ 156 (282)
T ss_pred HHhcCCCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC--CCeEEEEeccccccC------
Confidence 999999999999999987 57788889999999999999999999999999999987 589999999999864
Q ss_pred CCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCC--cEEEEeeCCcccCCcc
Q 018819 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETG--IAFASLYPGCIATTGL 313 (350)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~g--i~v~~v~PG~v~t~~~ 313 (350)
+|..+.|++||+|+.+|+++|+.|+. ..+ |++ +|+||+|+|++.
T Consensus 157 -----------------------------~P~~~~Y~ASK~Al~~f~etLR~El~-~~~~~i~i-~V~PG~V~Te~~ 202 (282)
T KOG1205|consen 157 -----------------------------LPFRSIYSASKHALEGFFETLRQELI-PLGTIIII-LVSPGPIETEFT 202 (282)
T ss_pred -----------------------------CCcccccchHHHHHHHHHHHHHHHhh-ccCceEEE-EEecCceeeccc
Confidence 46667999999999999999999994 444 666 999999999865
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=277.30 Aligned_cols=227 Identities=16% Similarity=0.183 Sum_probs=184.1
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccC-CCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~-~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
+++++|++|||||++|||+++|+.|+++|+ +|++++|+.+++++..+++... +.++.++.+|++|+++++++++++.
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~- 81 (263)
T PRK08339 4 IDLSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELK- 81 (263)
T ss_pred cCCCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHH-
Confidence 357899999999999999999999999995 8999999988877777766432 5578899999999999999999986
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
++|++|++|||||.... .++.+.+.++|++++++|+.++++++++++|.|.+++ .|+||++||.++..+
T Consensus 82 ~~g~iD~lv~nag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~--~g~Ii~isS~~~~~~-------- 150 (263)
T PRK08339 82 NIGEPDIFFFSTGGPKP-GYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKG--FGRIIYSTSVAIKEP-------- 150 (263)
T ss_pred hhCCCcEEEECCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEEcCccccCC--------
Confidence 58899999999998644 6677899999999999999999999999999998765 479999999987642
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch--
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-- 318 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~-- 318 (350)
.++...|+++|+++.++++.++.|+ .++||+||+|+||+|+|++......
T Consensus 151 ---------------------------~~~~~~y~asKaal~~l~~~la~el-~~~gIrVn~v~PG~v~T~~~~~~~~~~ 202 (263)
T PRK08339 151 ---------------------------IPNIALSNVVRISMAGLVRTLAKEL-GPKGITVNGIMPGIIRTDRVIQLAQDR 202 (263)
T ss_pred ---------------------------CCcchhhHHHHHHHHHHHHHHHHHh-cccCeEEEEEEeCcCccHHHHHHHHhh
Confidence 3567789999999999999999999 6789999999999999986421100
Q ss_pred ------hhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 319 ------PLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ------~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
+...............++.+|+|+|+.+++|
T Consensus 203 ~~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~v~fL 239 (263)
T PRK08339 203 AKREGKSVEEALQEYAKPIPLGRLGEPEEIGYLVAFL 239 (263)
T ss_pred hhccCCCHHHHHHHHhccCCcccCcCHHHHHHHHHHH
Confidence 0000000001111235578899999888754
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=278.26 Aligned_cols=221 Identities=15% Similarity=0.160 Sum_probs=173.6
Q ss_pred ccCCCEEEEEcCC--CchHHHHHHHHHHcCCcEEEEEecChh---HHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHH
Q 018819 83 TLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFL---KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDT 157 (350)
Q Consensus 83 ~l~~~~~lItGgs--~gIG~~ia~~la~~Ga~~Vi~~~r~~~---~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~ 157 (350)
.+++|++|||||+ +|||+++|+.|+++|+ +|++++|+.. ..++..+++ +.. .+++||++|.+++++++++
T Consensus 2 ~l~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~---~~~-~~~~~Dv~d~~~v~~~~~~ 76 (274)
T PRK08415 2 IMKGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEALKKRVEPIAQEL---GSD-YVYELDVSKPEHFKSLAES 76 (274)
T ss_pred ccCCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhc---CCc-eEEEecCCCHHHHHHHHHH
Confidence 4678999999997 8999999999999996 8999998853 222222222 333 5789999999999999999
Q ss_pred HHHcCCCCcEEEEccccCCC---CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCC
Q 018819 158 FRRSGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTL 234 (350)
Q Consensus 158 ~~~~~g~id~lv~~Ag~~~~---~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~ 234 (350)
+.+++|++|++|||||+... ..++.+.+.++|++++++|+.+++++++.++|.|.+ +|+||++||.++..+
T Consensus 77 i~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~----~g~Iv~isS~~~~~~-- 150 (274)
T PRK08415 77 LKKDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLND----GASVLTLSYLGGVKY-- 150 (274)
T ss_pred HHHHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhcc----CCcEEEEecCCCccC--
Confidence 99999999999999998532 256778899999999999999999999999999975 369999999877642
Q ss_pred CCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccc
Q 018819 235 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (350)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~ 314 (350)
.+++..|++||+|+.+|+++++.|+ .++||+||+|+||+|+|++..
T Consensus 151 ---------------------------------~~~~~~Y~asKaal~~l~~~la~el-~~~gIrVn~v~PG~v~T~~~~ 196 (274)
T PRK08415 151 ---------------------------------VPHYNVMGVAKAALESSVRYLAVDL-GKKGIRVNAISAGPIKTLAAS 196 (274)
T ss_pred ---------------------------------CCcchhhhhHHHHHHHHHHHHHHHh-hhcCeEEEEEecCccccHHHh
Confidence 3567789999999999999999999 678999999999999997532
Q ss_pred ccchhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 315 REHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
. ..+...............++.+|+|+++.++++
T Consensus 197 ~-~~~~~~~~~~~~~~~pl~r~~~pedva~~v~fL 230 (274)
T PRK08415 197 G-IGDFRMILKWNEINAPLKKNVSIEEVGNSGMYL 230 (274)
T ss_pred c-cchhhHHhhhhhhhCchhccCCHHHHHHHHHHH
Confidence 1 111100000000112235568899999988764
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-37 Score=276.98 Aligned_cols=223 Identities=13% Similarity=0.113 Sum_probs=174.3
Q ss_pred ccCCCEEEEEcCCC--chHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASS--GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 83 ~l~~~~~lItGgs~--gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
.+++|++|||||++ |||+++|+.|+++|+ +|++.+|+....+...+.....+. ..+++||++|.++++++++++.+
T Consensus 4 ~l~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~g~-~~~~~~Dv~d~~~v~~~~~~~~~ 81 (271)
T PRK06505 4 LMQGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEALGKRVKPLAESLGS-DFVLPCDVEDIASVDAVFEALEK 81 (271)
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchHHHHHHHHHHHhcCC-ceEEeCCCCCHHHHHHHHHHHHH
Confidence 36889999999997 999999999999996 888888875433332222222232 35789999999999999999999
Q ss_pred cCCCCcEEEEccccCCCC---CCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPT---AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~---~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~ 237 (350)
++|++|+||||||+.... .++.+.+.++|++++++|+.++++++++++|+|.+ +|+||++||.++..+
T Consensus 82 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~----~G~Iv~isS~~~~~~----- 152 (271)
T PRK06505 82 KWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPD----GGSMLTLTYGGSTRV----- 152 (271)
T ss_pred HhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhcc----CceEEEEcCCCcccc-----
Confidence 999999999999985421 45678899999999999999999999999999974 379999999887642
Q ss_pred CCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccc
Q 018819 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317 (350)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~ 317 (350)
.+++..|++||+|+.+|+++++.|+ .++||+||+|+||+|+|++... .
T Consensus 153 ------------------------------~~~~~~Y~asKaAl~~l~r~la~el-~~~gIrVn~v~PG~i~T~~~~~-~ 200 (271)
T PRK06505 153 ------------------------------MPNYNVMGVAKAALEASVRYLAADY-GPQGIRVNAISAGPVRTLAGAG-I 200 (271)
T ss_pred ------------------------------CCccchhhhhHHHHHHHHHHHHHHH-hhcCeEEEEEecCCcccccccc-C
Confidence 3567789999999999999999999 6789999999999999986421 1
Q ss_pred hhhHHhhhhhhH-HhhhcCccchhhhhhhcccc
Q 018819 318 IPLFRLLFPPFQ-KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 318 ~~~~~~~~~~~~-~~~~~~~~s~~~~a~~i~~~ 349 (350)
.+.... ..... .....++.+|||+|+.+++|
T Consensus 201 ~~~~~~-~~~~~~~~p~~r~~~peeva~~~~fL 232 (271)
T PRK06505 201 GDARAI-FSYQQRNSPLRRTVTIDEVGGSALYL 232 (271)
T ss_pred cchHHH-HHHHhhcCCccccCCHHHHHHHHHHH
Confidence 110000 00111 11234567999999988764
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=272.88 Aligned_cols=222 Identities=14% Similarity=0.175 Sum_probs=177.7
Q ss_pred ccCCCEEEEEcCC--CchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 83 TLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 83 ~l~~~~~lItGgs--~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
.+++|++|||||+ +|||+++|++|+++|+ +|++.+|+. +.++..+++. +.++.+++||++|+++++++++++.+
T Consensus 4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~-~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~ 79 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQND-RMKKSLQKLV--DEEDLLVECDVASDESIERAFATIKE 79 (252)
T ss_pred ccCCCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCch-HHHHHHHhhc--cCceeEEeCCCCCHHHHHHHHHHHHH
Confidence 4689999999999 8999999999999995 899999984 4444444443 23578899999999999999999999
Q ss_pred cCCCCcEEEEccccCCC---CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~---~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~ 237 (350)
+++++|++|||||+..+ ..++.+.+.++|++.+++|+.+++++++.++|.|.+ +|+||++||.++..+
T Consensus 80 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~----~g~Iv~iss~~~~~~----- 150 (252)
T PRK06079 80 RVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNP----GASIVTLTYFGSERA----- 150 (252)
T ss_pred HhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhccc----CceEEEEeccCcccc-----
Confidence 99999999999998643 256778899999999999999999999999999864 369999999887642
Q ss_pred CCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccc
Q 018819 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317 (350)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~ 317 (350)
.+++..|++||+|+.+|+++++.|+ .++||+||+|+||+|+|++....
T Consensus 151 ------------------------------~~~~~~Y~asKaal~~l~~~la~el-~~~gI~vn~i~PG~v~T~~~~~~- 198 (252)
T PRK06079 151 ------------------------------IPNYNVMGIAKAALESSVRYLARDL-GKKGIRVNAISAGAVKTLAVTGI- 198 (252)
T ss_pred ------------------------------CCcchhhHHHHHHHHHHHHHHHHHh-hhcCcEEEEEecCcccccccccC-
Confidence 3567899999999999999999999 67799999999999999864221
Q ss_pred hhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 318 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.+..........+....++.+|||+|+.+.++
T Consensus 199 ~~~~~~~~~~~~~~p~~r~~~pedva~~~~~l 230 (252)
T PRK06079 199 KGHKDLLKESDSRTVDGVGVTIEEVGNTAAFL 230 (252)
T ss_pred CChHHHHHHHHhcCcccCCCCHHHHHHHHHHH
Confidence 11001000011112235678999999988764
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=271.95 Aligned_cols=226 Identities=16% Similarity=0.183 Sum_probs=180.3
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+++++|++|||||++|||+++|++|+++|+ +|++++|+.. ++..+.++..+.++.++.+|++|+++++++++++.+.
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~-~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12481 4 FDLNGKVAIITGCNTGLGQGMAIGLAKAGA-DIVGVGVAEA--PETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEV 80 (251)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCchH--HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999995 8888888642 2333344444567889999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|++|||||+... .++.+.+.++|++++++|+.++++++++++|.|.+++. +|+||++||.++..+
T Consensus 81 ~g~iD~lv~~ag~~~~-~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~-~g~ii~isS~~~~~~--------- 149 (251)
T PRK12481 81 MGHIDILINNAGIIRR-QDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGN-GGKIINIASMLSFQG--------- 149 (251)
T ss_pred cCCCCEEEECCCcCCC-CCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCC-CCEEEEeCChhhcCC---------
Confidence 9999999999998644 56778899999999999999999999999999976532 379999999988753
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.++...|++||++++.+++.++.|+ .++||+||+|+||+|+|++..... +..
T Consensus 150 --------------------------~~~~~~Y~asK~a~~~l~~~la~e~-~~~girvn~v~PG~v~t~~~~~~~-~~~ 201 (251)
T PRK12481 150 --------------------------GIRVPSYTASKSAVMGLTRALATEL-SQYNINVNAIAPGYMATDNTAALR-ADT 201 (251)
T ss_pred --------------------------CCCCcchHHHHHHHHHHHHHHHHHH-hhcCeEEEEEecCCCccCchhhcc-cCh
Confidence 2456789999999999999999999 677999999999999998653211 100
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
........+....++.+|||+|+.+.+|
T Consensus 202 ~~~~~~~~~~p~~~~~~peeva~~~~~L 229 (251)
T PRK12481 202 ARNEAILERIPASRWGTPDDLAGPAIFL 229 (251)
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 0000111122235578999999988754
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=271.01 Aligned_cols=228 Identities=21% Similarity=0.209 Sum_probs=187.6
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+.+++|++|||||++|||++++++|+++|+ +|++++|+.++.+++.+++...+.++.++.||++|+++++++++++.++
T Consensus 2 ~~~~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (254)
T PRK07478 2 MRLNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVER 80 (254)
T ss_pred CCCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 457889999999999999999999999995 8999999988888887777766778899999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|++|||||+.....++.+.+.++|++++++|+.+++++++.++|.|.+++ .++||++||..+...
T Consensus 81 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~--~~~iv~~sS~~~~~~--------- 149 (254)
T PRK07478 81 FGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARG--GGSLIFTSTFVGHTA--------- 149 (254)
T ss_pred cCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CceEEEEechHhhcc---------
Confidence 999999999999865445677889999999999999999999999999998765 479999999877521
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
+.+++..|++||++++.++++++.|+ .++||+|++|+||+|+|++....... .
T Consensus 150 -------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~-~ 202 (254)
T PRK07478 150 -------------------------GFPGMAAYAASKAGLIGLTQVLAAEY-GAQGIRVNALLPGGTDTPMGRAMGDT-P 202 (254)
T ss_pred -------------------------CCCCcchhHHHHHHHHHHHHHHHHHH-hhcCEEEEEEeeCcccCcccccccCC-H
Confidence 13567899999999999999999999 56799999999999999865321100 0
Q ss_pred HhhhhhhHH-hhhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQK-YITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~~-~~~~~~~s~~~~a~~i~~~ 349 (350)
.. ...... .....+.+|+|+|+.++++
T Consensus 203 ~~-~~~~~~~~~~~~~~~~~~va~~~~~l 230 (254)
T PRK07478 203 EA-LAFVAGLHALKRMAQPEEIAQAALFL 230 (254)
T ss_pred HH-HHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 00 001111 1124567999999988764
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=270.35 Aligned_cols=223 Identities=14% Similarity=0.148 Sum_probs=175.0
Q ss_pred ccccCCCEEEEEcCC--CchHHHHHHHHHHcCCcEEEEEecChhH---HHHHHHHhccCCCceEEEEccCCCHHHHHHHH
Q 018819 81 KKTLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLK---AERAAKSAGMAKENYTIMHLDLASLDSVRQFV 155 (350)
Q Consensus 81 ~~~l~~~~~lItGgs--~gIG~~ia~~la~~Ga~~Vi~~~r~~~~---~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~ 155 (350)
.+++++|++|||||+ +|||+++|++|+++|+ +|++++|+... +++..+++ ..+.+++||++|++++++++
T Consensus 5 ~~~~~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~~~~ 79 (258)
T PRK07533 5 LLPLAGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEEL----DAPIFLPLDVREPGQLEAVF 79 (258)
T ss_pred ccccCCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhh----ccceEEecCcCCHHHHHHHH
Confidence 446789999999998 5999999999999996 89988887543 23333332 23567899999999999999
Q ss_pred HHHHHcCCCCcEEEEccccCCC---CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCC
Q 018819 156 DTFRRSGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTN 232 (350)
Q Consensus 156 ~~~~~~~g~id~lv~~Ag~~~~---~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~ 232 (350)
+++.+++|++|++|||||+... ..++.+.+.++|++++++|+.+++++++.++|.|.+ +|+||++||..+..+
T Consensus 80 ~~~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~----~g~Ii~iss~~~~~~ 155 (258)
T PRK07533 80 ARIAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTN----GGSLLTMSYYGAEKV 155 (258)
T ss_pred HHHHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhcc----CCEEEEEeccccccC
Confidence 9999999999999999998532 245678899999999999999999999999999964 369999999876532
Q ss_pred CCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 233 TLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
.+++..|++||+|+.+++++++.|+ .++||+||+|+||+|+|++
T Consensus 156 -----------------------------------~~~~~~Y~asKaal~~l~~~la~el-~~~gI~Vn~v~PG~v~T~~ 199 (258)
T PRK07533 156 -----------------------------------VENYNLMGPVKAALESSVRYLAAEL-GPKGIRVHAISPGPLKTRA 199 (258)
T ss_pred -----------------------------------CccchhhHHHHHHHHHHHHHHHHHh-hhcCcEEEEEecCCcCChh
Confidence 3567789999999999999999999 6779999999999999986
Q ss_pred ccccchhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 313 LFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
... .............+....++.+|+|+|+.++++
T Consensus 200 ~~~-~~~~~~~~~~~~~~~p~~r~~~p~dva~~~~~L 235 (258)
T PRK07533 200 ASG-IDDFDALLEDAAERAPLRRLVDIDDVGAVAAFL 235 (258)
T ss_pred hhc-cCCcHHHHHHHHhcCCcCCCCCHHHHHHHHHHH
Confidence 421 111111111111112234577999999888764
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=271.14 Aligned_cols=225 Identities=16% Similarity=0.121 Sum_probs=173.7
Q ss_pred ccCCCEEEEEcC--CCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 83 TLRKGSVIITGA--SSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 83 ~l~~~~~lItGg--s~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
.+++|++||||| ++|||+++|+.|+++|+ +|++.+|+. +.++..+++.........++||++|+++++++++++.+
T Consensus 3 ~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~-~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (261)
T PRK08690 3 FLQGKKILITGMISERSIAYGIAKACREQGA-ELAFTYVVD-KLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGK 80 (261)
T ss_pred ccCCcEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCcH-HHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHH
Confidence 468899999997 67999999999999996 888887763 23333333332222346789999999999999999999
Q ss_pred cCCCCcEEEEccccCCCC----CCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPT----AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~----~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~ 236 (350)
+++++|++|||||+.... ..+++.+.++|+.++++|+.+++++++++.|.|.++ +|+||++||..+..+
T Consensus 81 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~---~g~Iv~iss~~~~~~---- 153 (261)
T PRK08690 81 HWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGR---NSAIVALSYLGAVRA---- 153 (261)
T ss_pred HhCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhc---CcEEEEEcccccccC----
Confidence 999999999999986431 124567889999999999999999999999998654 379999999887642
Q ss_pred CCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccccc
Q 018819 237 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 316 (350)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~ 316 (350)
.+++..|++||+|+..+++.++.|+ .++||+||+|+||+|+|++...
T Consensus 154 -------------------------------~~~~~~Y~asKaal~~l~~~la~e~-~~~gIrVn~i~PG~v~T~~~~~- 200 (261)
T PRK08690 154 -------------------------------IPNYNVMGMAKASLEAGIRFTAACL-GKEGIRCNGISAGPIKTLAASG- 200 (261)
T ss_pred -------------------------------CCCcccchhHHHHHHHHHHHHHHHh-hhcCeEEEEEecCcccchhhhc-
Confidence 3577899999999999999999999 6789999999999999986421
Q ss_pred chhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 317 HIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..+...............++.+|||+|+.++++
T Consensus 201 ~~~~~~~~~~~~~~~p~~r~~~peevA~~v~~l 233 (261)
T PRK08690 201 IADFGKLLGHVAAHNPLRRNVTIEEVGNTAAFL 233 (261)
T ss_pred CCchHHHHHHHhhcCCCCCCCCHHHHHHHHHHH
Confidence 111011100111112235678999999988764
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=270.74 Aligned_cols=225 Identities=20% Similarity=0.236 Sum_probs=183.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|++|||||++|||+++|+.|+++|+ +|++++|+ +..++..+++...+.++.++.||++|+++++++++++.+.+
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQF 80 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 36789999999999999999999999995 99999999 67777777776666678999999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|+||||||+.....++.+.+.+.|++++++|+.++++++++++|.|.+++ |+||++||.++..+
T Consensus 81 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~---g~iv~isS~~~~~~---------- 147 (272)
T PRK08589 81 GRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQG---GSIINTSSFSGQAA---------- 147 (272)
T ss_pred CCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC---CEEEEeCchhhcCC----------
Confidence 99999999999864445677889999999999999999999999999998653 79999999987643
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchh-hH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP-LF 321 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~-~~ 321 (350)
.++...|++||++++.++++++.|+ .++||+||+|+||+|+|++....... ..
T Consensus 148 -------------------------~~~~~~Y~asKaal~~l~~~la~e~-~~~gI~v~~v~PG~v~T~~~~~~~~~~~~ 201 (272)
T PRK08589 148 -------------------------DLYRSGYNAAKGAVINFTKSIAIEY-GRDGIRANAIAPGTIETPLVDKLTGTSED 201 (272)
T ss_pred -------------------------CCCCchHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecCcccCchhhhhcccchh
Confidence 2456789999999999999999999 67799999999999999865321100 00
Q ss_pred HhhhhhhH-----HhhhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQ-----KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~-----~~~~~~~~s~~~~a~~i~~~ 349 (350)
... ..+. .....++.+|+|+++.++++
T Consensus 202 ~~~-~~~~~~~~~~~~~~~~~~~~~va~~~~~l 233 (272)
T PRK08589 202 EAG-KTFRENQKWMTPLGRLGKPEEVAKLVVFL 233 (272)
T ss_pred hHH-HHHhhhhhccCCCCCCcCHHHHHHHHHHH
Confidence 000 0010 11224467899999988654
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=270.25 Aligned_cols=225 Identities=13% Similarity=0.124 Sum_probs=175.8
Q ss_pred ccCCCEEEEEcCC--CchHHHHHHHHHHcCCcEEEEEecChh--HHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHH
Q 018819 83 TLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFL--KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 158 (350)
Q Consensus 83 ~l~~~~~lItGgs--~gIG~~ia~~la~~Ga~~Vi~~~r~~~--~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~ 158 (350)
.+++|+++||||+ +|||+++|++|+++|+ +|++..|+.+ +.++..+++...+.++.+++||++|+++++++++++
T Consensus 3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~ 81 (258)
T PRK07370 3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGA-ELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETI 81 (258)
T ss_pred ccCCcEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHH
Confidence 4689999999986 8999999999999996 7887765432 333444444433445778999999999999999999
Q ss_pred HHcCCCCcEEEEccccCCC---CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCC
Q 018819 159 RRSGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLA 235 (350)
Q Consensus 159 ~~~~g~id~lv~~Ag~~~~---~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~ 235 (350)
.+++|++|++|||||+... ..++.+.+.++|++++++|+.++++++++++|.|.+ +|+||++||..+..+
T Consensus 82 ~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~----~g~Iv~isS~~~~~~--- 154 (258)
T PRK07370 82 KQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSE----GGSIVTLTYLGGVRA--- 154 (258)
T ss_pred HHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhh----CCeEEEEeccccccC---
Confidence 9999999999999998532 246778899999999999999999999999999975 369999999887642
Q ss_pred CCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccc
Q 018819 236 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 315 (350)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~ 315 (350)
.+++..|++||+|+.+++++++.|+ .++||+||+|+||+|+|++...
T Consensus 155 --------------------------------~~~~~~Y~asKaal~~l~~~la~el-~~~gI~Vn~i~PG~v~T~~~~~ 201 (258)
T PRK07370 155 --------------------------------IPNYNVMGVAKAALEASVRYLAAEL-GPKNIRVNAISAGPIRTLASSA 201 (258)
T ss_pred --------------------------------CcccchhhHHHHHHHHHHHHHHHHh-CcCCeEEEEEecCcccCchhhc
Confidence 3577899999999999999999999 6789999999999999986421
Q ss_pred cchhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 316 EHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..................++.+|+|+++.+.++
T Consensus 202 -~~~~~~~~~~~~~~~p~~r~~~~~dva~~~~fl 234 (258)
T PRK07370 202 -VGGILDMIHHVEEKAPLRRTVTQTEVGNTAAFL 234 (258)
T ss_pred -cccchhhhhhhhhcCCcCcCCCHHHHHHHHHHH
Confidence 100001000111111234567899999887654
|
|
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=267.49 Aligned_cols=227 Identities=22% Similarity=0.228 Sum_probs=182.3
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccC---CCceEEEEccCCCHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA---KENYTIMHLDLASLDSVRQFVDTF 158 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~---~~~v~~~~~Dvs~~~~v~~~~~~~ 158 (350)
+.+.+|++||||+++|||+++|+.|++.|| +|++++|+.+..++..+++... +.++..+.||+++++++++++++.
T Consensus 4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~ 82 (270)
T KOG0725|consen 4 GRLAGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFA 82 (270)
T ss_pred ccCCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHH
Confidence 468999999999999999999999999997 9999999999888887776543 446999999999999999999999
Q ss_pred HHc-CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHH-HHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCC
Q 018819 159 RRS-GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLG-HFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236 (350)
Q Consensus 159 ~~~-~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g-~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~ 236 (350)
.++ +|+||++|||||......++.+.+.|+|++++++|+.| .+.+.+.+.+++.+++ +|.|+++||..+..+.
T Consensus 83 ~~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~--gg~I~~~ss~~~~~~~--- 157 (270)
T KOG0725|consen 83 VEKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSK--GGSIVNISSVAGVGPG--- 157 (270)
T ss_pred HHHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcC--CceEEEEeccccccCC---
Confidence 988 79999999999998765578899999999999999995 6666666666666655 5799999999887532
Q ss_pred CCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccccc
Q 018819 237 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 316 (350)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~ 316 (350)
++....|+++|+|++.++++++.|| .++|||||+|+||.|.|+..
T Consensus 158 -------------------------------~~~~~~Y~~sK~al~~ltr~lA~El-~~~gIRvN~v~PG~i~T~~~--- 202 (270)
T KOG0725|consen 158 -------------------------------PGSGVAYGVSKAALLQLTRSLAKEL-AKHGIRVNSVSPGLVKTSLR--- 202 (270)
T ss_pred -------------------------------CCCcccchhHHHHHHHHHHHHHHHH-hhcCcEEEEeecCcEeCCcc---
Confidence 1122799999999999999999999 78899999999999999861
Q ss_pred chhhHHhhhhhh-------HHhhhcCccchhhhhhhcccc
Q 018819 317 HIPLFRLLFPPF-------QKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 317 ~~~~~~~~~~~~-------~~~~~~~~~s~~~~a~~i~~~ 349 (350)
...+.......+ ...+..++..|+|+++.+.++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~p~gr~g~~~eva~~~~fl 242 (270)
T KOG0725|consen 203 AAGLDDGEMEEFKEATDSKGAVPLGRVGTPEEVAEAAAFL 242 (270)
T ss_pred ccccccchhhHHhhhhccccccccCCccCHHHHHHhHHhh
Confidence 111110000111 112346678888888777654
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-36 Score=269.08 Aligned_cols=223 Identities=14% Similarity=0.118 Sum_probs=173.9
Q ss_pred ccCCCEEEEEcCCC--chHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccC-CCceEEEEccCCCHHHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASS--GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 83 ~l~~~~~lItGgs~--gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~-~~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
.+++|++|||||++ |||+++|+.|+++|+ +|++.+|+. ..++..+++... +. ..+++||++|+++++++++++.
T Consensus 5 ~~~~k~~lITGas~~~GIG~a~a~~la~~G~-~v~~~~r~~-~~~~~~~~l~~~~g~-~~~~~~Dv~~~~~v~~~~~~~~ 81 (260)
T PRK06603 5 LLQGKKGLITGIANNMSISWAIAQLAKKHGA-ELWFTYQSE-VLEKRVKPLAEEIGC-NFVSELDVTNPKSISNLFDDIK 81 (260)
T ss_pred ccCCcEEEEECCCCCcchHHHHHHHHHHcCC-EEEEEeCch-HHHHHHHHHHHhcCC-ceEEEccCCCHHHHHHHHHHHH
Confidence 46789999999997 999999999999996 888888874 333333334222 32 3467899999999999999999
Q ss_pred HcCCCCcEEEEccccCCC---CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCC
Q 018819 160 RSGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~---~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~ 236 (350)
+++|++|++|||||+... ..++.+.+.++|++++++|+.+++.+++.+.|.|.+ +|+||++||..+..+
T Consensus 82 ~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~----~G~Iv~isS~~~~~~---- 153 (260)
T PRK06603 82 EKWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHD----GGSIVTLTYYGAEKV---- 153 (260)
T ss_pred HHcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhcc----CceEEEEecCccccC----
Confidence 999999999999997532 245778899999999999999999999999999964 379999999877632
Q ss_pred CCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccccc
Q 018819 237 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 316 (350)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~ 316 (350)
.+++..|++||+|+.+|+++++.|+ .++||+||+|+||+|+|++...
T Consensus 154 -------------------------------~~~~~~Y~asKaal~~l~~~la~el-~~~gIrVn~v~PG~v~T~~~~~- 200 (260)
T PRK06603 154 -------------------------------IPNYNVMGVAKAALEASVKYLANDM-GENNIRVNAISAGPIKTLASSA- 200 (260)
T ss_pred -------------------------------CCcccchhhHHHHHHHHHHHHHHHh-hhcCeEEEEEecCcCcchhhhc-
Confidence 3567899999999999999999999 6789999999999999986321
Q ss_pred chhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 317 HIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..................++.+|+|+|+.+++|
T Consensus 201 ~~~~~~~~~~~~~~~p~~r~~~pedva~~~~~L 233 (260)
T PRK06603 201 IGDFSTMLKSHAATAPLKRNTTQEDVGGAAVYL 233 (260)
T ss_pred CCCcHHHHHHHHhcCCcCCCCCHHHHHHHHHHH
Confidence 000001100111112235567899999988765
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=267.58 Aligned_cols=227 Identities=21% Similarity=0.192 Sum_probs=185.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhcc--CCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM--AKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~--~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
.+++|++|||||++|||++++++|+++|+ +|++++|+.+..++..+++.. .+.++.+++||++|+++++++++++.+
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEE 82 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999995 899999998888888777765 456788999999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
.++++|++|||||.... ..+.+.+.++|++++++|+.++++++++++|.|.+++ .|+||++||..+..+
T Consensus 83 ~~g~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~~-------- 151 (260)
T PRK07063 83 AFGPLDVLVNNAGINVF-ADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERG--RGSIVNIASTHAFKI-------- 151 (260)
T ss_pred HhCCCcEEEECCCcCCC-CChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhC--CeEEEEECChhhccC--------
Confidence 99999999999998643 4556788999999999999999999999999998764 479999999887643
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch--
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-- 318 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~-- 318 (350)
.++...|++||++++.++++++.|+ .++||+||+|+||+|+|++......
T Consensus 152 ---------------------------~~~~~~Y~~sKaa~~~~~~~la~el-~~~gIrvn~v~PG~v~t~~~~~~~~~~ 203 (260)
T PRK07063 152 ---------------------------IPGCFPYPVAKHGLLGLTRALGIEY-AARNVRVNAIAPGYIETQLTEDWWNAQ 203 (260)
T ss_pred ---------------------------CCCchHHHHHHHHHHHHHHHHHHHh-CccCeEEEEEeeCCccChhhhhhhhcc
Confidence 3567789999999999999999999 6779999999999999986422100
Q ss_pred hhHHhhhh-hhHHhhhcCccchhhhhhhcccc
Q 018819 319 PLFRLLFP-PFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ~~~~~~~~-~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
+....... ........++.+|+|+|+.+++|
T Consensus 204 ~~~~~~~~~~~~~~~~~r~~~~~~va~~~~fl 235 (260)
T PRK07063 204 PDPAAARAETLALQPMKRIGRPEEVAMTAVFL 235 (260)
T ss_pred CChHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 00000000 01111235577999999988764
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=267.85 Aligned_cols=224 Identities=11% Similarity=0.129 Sum_probs=176.9
Q ss_pred cccCCCEEEEEcCC--CchHHHHHHHHHHcCCcEEEEEecCh---hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHH
Q 018819 82 KTLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDF---LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVD 156 (350)
Q Consensus 82 ~~l~~~~~lItGgs--~gIG~~ia~~la~~Ga~~Vi~~~r~~---~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~ 156 (350)
+.+++|++|||||+ +|||+++|+.|+++|+ +|++++|+. +.++++.+++. +.++.+++||++|+++++++++
T Consensus 3 ~~~~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~ 79 (257)
T PRK08594 3 LSLEGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAGERLEKEVRELADTLE--GQESLLLPCDVTSDEEITACFE 79 (257)
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCcccchHHHHHHHHHcC--CCceEEEecCCCCHHHHHHHHH
Confidence 35688999999997 8999999999999996 888887653 34455544443 4578899999999999999999
Q ss_pred HHHHcCCCCcEEEEccccCCC---CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCC
Q 018819 157 TFRRSGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNT 233 (350)
Q Consensus 157 ~~~~~~g~id~lv~~Ag~~~~---~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~ 233 (350)
++.+++|++|++|||||+... ..++.+.+.++|++.+++|+.++++++++++|.|.+ +|+||++||..+..+
T Consensus 80 ~~~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~----~g~Iv~isS~~~~~~- 154 (257)
T PRK08594 80 TIKEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTE----GGSIVTLTYLGGERV- 154 (257)
T ss_pred HHHHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhccc----CceEEEEcccCCccC-
Confidence 999999999999999998532 245678899999999999999999999999999965 379999999987643
Q ss_pred CCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 234 LAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.++...|++||+|+..|+++++.|+ .++||+||+|+||+|+|++.
T Consensus 155 ----------------------------------~~~~~~Y~asKaal~~l~~~la~el-~~~gIrvn~v~PG~v~T~~~ 199 (257)
T PRK08594 155 ----------------------------------VQNYNVMGVAKASLEASVKYLANDL-GKDGIRVNAISAGPIRTLSA 199 (257)
T ss_pred ----------------------------------CCCCchhHHHHHHHHHHHHHHHHHh-hhcCCEEeeeecCcccCHhH
Confidence 3566789999999999999999999 67799999999999999853
Q ss_pred cccchhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 314 FREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.. ..+..........+....++.+|+|+|+.++++
T Consensus 200 ~~-~~~~~~~~~~~~~~~p~~r~~~p~~va~~~~~l 234 (257)
T PRK08594 200 KG-VGGFNSILKEIEERAPLRRTTTQEEVGDTAAFL 234 (257)
T ss_pred hh-hccccHHHHHHhhcCCccccCCHHHHHHHHHHH
Confidence 21 101101000001111224568999999988764
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=269.40 Aligned_cols=262 Identities=79% Similarity=1.233 Sum_probs=193.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.+|++|||||++|||+++|+.|+++|+.+|++++|+.++.++..+++...+.++.++.||++|.++++++++++.+.+++
T Consensus 2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~ 81 (314)
T TIGR01289 2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESGRP 81 (314)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 36799999999999999999999999448999999988887777777655667888999999999999999999888899
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
+|++|||||+..+.....+.+.++|+.++++|+.|++++++.++|.|.+++...|+||++||.++......+..++..+.
T Consensus 82 iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~ 161 (314)
T TIGR01289 82 LDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNVPPKANL 161 (314)
T ss_pred CCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCccccccCCCcCCCcccc
Confidence 99999999985433334467899999999999999999999999999875322379999999988654322222222222
Q ss_pred cccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcc-cCCcccccchhhHHh
Q 018819 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI-ATTGLFREHIPLFRL 323 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v-~t~~~~~~~~~~~~~ 323 (350)
.++..+..+.. ....+.+..++.++..|++||+++..+++.+++++..+.||+|++|+||+| +|++... ..+..+.
T Consensus 162 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~T~l~~~-~~~~~~~ 238 (314)
T TIGR01289 162 GDLSGLAAGFK--APIAMIDGKEFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIADTGLFRE-HVPLFRT 238 (314)
T ss_pred cccccccccCC--CcccccCCCCcchhhhHHHhHHHHHHHHHHHHHHhccCCCeEEEEecCCcccCCccccc-ccHHHHH
Confidence 22211111100 011122233456778999999999999999999984346899999999999 5876432 2232333
Q ss_pred hhhhhHHhhhcCccchhhhhhhcccc
Q 018819 324 LFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 324 ~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..+.+.+....+..+++++++.++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~a~~l~~~ 264 (314)
T TIGR01289 239 LFPPFQKYITKGYVSEEEAGERLAQV 264 (314)
T ss_pred HHHHHHHHHhccccchhhhhhhhHHh
Confidence 33444444445678999999887753
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=266.43 Aligned_cols=226 Identities=21% Similarity=0.213 Sum_probs=185.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|++|||||++|||++++++|+++|+ +|++++|+.+..++..+++...+.++.++.+|++|+++++++++++.+.+
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999995 89999999888888888777666778899999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|++|||||.... .++.+.+.++|++++++|+.+++++++++.|.|.+++. +|+||++||.++....
T Consensus 85 g~id~lv~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~g~iv~~sS~~~~~~~--------- 153 (253)
T PRK05867 85 GGIDIAVCNAGIITV-TPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQ-GGVIINTASMSGHIIN--------- 153 (253)
T ss_pred CCCCEEEECCCCCCC-CChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCC-CcEEEEECcHHhcCCC---------
Confidence 999999999998644 56778899999999999999999999999999976532 3689999998775321
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.......|++||++++.++++++.|+ .++||+||+|+||+|+|++... ......
T Consensus 154 ------------------------~~~~~~~Y~asKaal~~~~~~la~e~-~~~gI~vn~i~PG~v~t~~~~~-~~~~~~ 207 (253)
T PRK05867 154 ------------------------VPQQVSHYCASKAAVIHLTKAMAVEL-APHKIRVNSVSPGYILTELVEP-YTEYQP 207 (253)
T ss_pred ------------------------CCCCccchHHHHHHHHHHHHHHHHHH-hHhCeEEEEeecCCCCCccccc-chHHHH
Confidence 01234689999999999999999999 6779999999999999987532 111110
Q ss_pred hhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 323 LLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
. ........++.+|+|+|+.+++|
T Consensus 208 ~---~~~~~~~~r~~~p~~va~~~~~L 231 (253)
T PRK05867 208 L---WEPKIPLGRLGRPEELAGLYLYL 231 (253)
T ss_pred H---HHhcCCCCCCcCHHHHHHHHHHH
Confidence 0 11112235678999999988764
|
|
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=270.61 Aligned_cols=259 Identities=92% Similarity=1.408 Sum_probs=189.5
Q ss_pred EEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcEEE
Q 018819 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLV 169 (350)
Q Consensus 90 lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~lv 169 (350)
|||||++|||+++|+.|+++|+.+|++++|+.+..++..++++..+.++.++.||++|.++++++++++.+.++++|+||
T Consensus 1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~lI 80 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVLV 80 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCEEE
Confidence 69999999999999999999933899999998888777777765556788899999999999999999998889999999
Q ss_pred EccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcccccc
Q 018819 170 CNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRG 249 (350)
Q Consensus 170 ~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~ 249 (350)
||||+.....++.+.+.++|++++++|+.|++++++.++|.|.+++..+|+||++||..+..+...+..++..+..+++.
T Consensus 81 nnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~~~~~~ 160 (308)
T PLN00015 81 CNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRG 160 (308)
T ss_pred ECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccCCCccchhhhhh
Confidence 99998644335667899999999999999999999999999987532137999999998764322122222222222222
Q ss_pred ccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcc-cCCcccccchhhHHhhhhhh
Q 018819 250 FAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI-ATTGLFREHIPLFRLLFPPF 328 (350)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v-~t~~~~~~~~~~~~~~~~~~ 328 (350)
........+...+.....+.+..+|++||+|+..+++.+++++.+..||+|++|+||+| .|++... ..+..+...+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~aY~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~~~~~-~~~~~~~~~~~~ 239 (308)
T PLN00015 161 LAGGLNGLNSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFRE-HIPLFRLLFPPF 239 (308)
T ss_pred hhcccCCccchhhccccCCcHHHHHhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCcccccc-ccHHHHHHHHHH
Confidence 22111111111111122356778999999999999999999984446999999999999 6766432 223223223333
Q ss_pred HHhhhcCccchhhhhhhcccc
Q 018819 329 QKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 329 ~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.+....++.+||++|+.++++
T Consensus 240 ~~~~~~~~~~pe~~a~~~~~l 260 (308)
T PLN00015 240 QKYITKGYVSEEEAGKRLAQV 260 (308)
T ss_pred HHHHhcccccHHHhhhhhhhh
Confidence 344445678999999988764
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=275.81 Aligned_cols=222 Identities=23% Similarity=0.237 Sum_probs=186.5
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+.+++|++|||||++|||+++|++|+++|+ +|++++|+.+.+++..+++...+.++.++.+|++|.++++++++++.+.
T Consensus 3 ~~l~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (330)
T PRK06139 3 GPLHGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASF 81 (330)
T ss_pred cCCCCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHh
Confidence 356889999999999999999999999995 8999999998888888888777778899999999999999999999998
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|++|||||+... .++.+.+.++|++++++|+.|++++++.++|+|.+++ .|+||++||..+..+
T Consensus 82 ~g~iD~lVnnAG~~~~-~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~--~g~iV~isS~~~~~~--------- 149 (330)
T PRK06139 82 GGRIDVWVNNVGVGAV-GRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQG--HGIFINMISLGGFAA--------- 149 (330)
T ss_pred cCCCCEEEECCCcCCC-CCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcC--CCEEEEEcChhhcCC---------
Confidence 8999999999998644 6788899999999999999999999999999998765 479999999887653
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.+.+..|++||+++.+|+++++.|+....||+|++|+||+|+|+++........
T Consensus 150 --------------------------~p~~~~Y~asKaal~~~~~sL~~El~~~~gI~V~~v~Pg~v~T~~~~~~~~~~~ 203 (330)
T PRK06139 150 --------------------------QPYAAAYSASKFGLRGFSEALRGELADHPDIHVCDVYPAFMDTPGFRHGANYTG 203 (330)
T ss_pred --------------------------CCCchhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCccCccccccccccc
Confidence 356789999999999999999999843359999999999999997632111100
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhccc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
.... ......+||++|+.+++
T Consensus 204 ~~~~------~~~~~~~pe~vA~~il~ 224 (330)
T PRK06139 204 RRLT------PPPPVYDPRRVAKAVVR 224 (330)
T ss_pred cccc------CCCCCCCHHHHHHHHHH
Confidence 0000 01235688998888764
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=267.03 Aligned_cols=223 Identities=13% Similarity=0.141 Sum_probs=172.8
Q ss_pred cCCCEEEEEcCCC--chHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 84 LRKGSVIITGASS--GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 84 l~~~~~lItGgs~--gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+++|++|||||++ |||+++|+.|+++|+ +|++.+|+. +.++..+++......+.++.||++|+++++++++++.+.
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 81 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQND-KLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKV 81 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEecch-hHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhh
Confidence 6889999999986 999999999999996 888888873 334444444433335678899999999999999999999
Q ss_pred CCCCcEEEEccccCCCCC----CCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTA----KEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~----~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~ 237 (350)
+|++|++|||||+..... .+.+.+.++|+.++++|+.+++.+++.+.|.+.+ +|+||++||..+..+
T Consensus 82 ~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~----~g~Iv~iss~~~~~~----- 152 (262)
T PRK07984 82 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNP----GSALLTLSYLGAERA----- 152 (262)
T ss_pred cCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcC----CcEEEEEecCCCCCC-----
Confidence 999999999999853211 2556789999999999999999999999886643 369999999877532
Q ss_pred CCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccc
Q 018819 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317 (350)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~ 317 (350)
.+++..|++||+|+.+|++.++.|+ .++||+||+|+||+|+|++... .
T Consensus 153 ------------------------------~~~~~~Y~asKaal~~l~~~la~el-~~~gIrVn~i~PG~v~T~~~~~-~ 200 (262)
T PRK07984 153 ------------------------------IPNYNVMGLAKASLEANVRYMANAM-GPEGVRVNAISAGPIRTLAASG-I 200 (262)
T ss_pred ------------------------------CCCcchhHHHHHHHHHHHHHHHHHh-cccCcEEeeeecCcccchHHhc-C
Confidence 3567799999999999999999999 6779999999999999975321 1
Q ss_pred hhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 318 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.................++.+|+|+++.++++
T Consensus 201 ~~~~~~~~~~~~~~p~~r~~~pedva~~~~~L 232 (262)
T PRK07984 201 KDFRKMLAHCEAVTPIRRTVTIEDVGNSAAFL 232 (262)
T ss_pred CchHHHHHHHHHcCCCcCCCCHHHHHHHHHHH
Confidence 11111100001111235677999999988764
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=274.02 Aligned_cols=232 Identities=16% Similarity=0.113 Sum_probs=178.7
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh----------hHHHHHHHHhccCCCceEEEEccCCCHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF----------LKAERAAKSAGMAKENYTIMHLDLASLDSV 151 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~----------~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v 151 (350)
..+++|++|||||++|||+++|+.|++.|+ +|++++|+. +..++..+++...+.++.+++||++|++++
T Consensus 4 ~~l~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v 82 (305)
T PRK08303 4 KPLRGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQV 82 (305)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHH
Confidence 357899999999999999999999999996 899999873 345555566655566788999999999999
Q ss_pred HHHHHHHHHcCCCCcEEEEcc-ccCC---CCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEecc
Q 018819 152 RQFVDTFRRSGRPLDVLVCNA-AVYL---PTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 227 (350)
Q Consensus 152 ~~~~~~~~~~~g~id~lv~~A-g~~~---~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~ 227 (350)
+++++++.+.+|+||++|||| |... ...++.+.+.++|++++++|+.++++++++++|.|.+++ +|+||++||.
T Consensus 83 ~~~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~--~g~IV~isS~ 160 (305)
T PRK08303 83 RALVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRP--GGLVVEITDG 160 (305)
T ss_pred HHHHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCC--CcEEEEECCc
Confidence 999999999999999999999 7521 124566788999999999999999999999999997654 4799999997
Q ss_pred CCCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCc
Q 018819 228 TGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGC 307 (350)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~ 307 (350)
.+.... .+.++...|++||+|+.+|+++++.|+ .+.||+||+|+||+
T Consensus 161 ~~~~~~--------------------------------~~~~~~~~Y~asKaal~~lt~~La~el-~~~gIrVn~v~PG~ 207 (305)
T PRK08303 161 TAEYNA--------------------------------THYRLSVFYDLAKTSVNRLAFSLAHEL-APHGATAVALTPGW 207 (305)
T ss_pred cccccC--------------------------------cCCCCcchhHHHHHHHHHHHHHHHHHh-hhcCcEEEEecCCc
Confidence 654311 012345689999999999999999999 67899999999999
Q ss_pred ccCCcccccchhhHHhhhhhhHHhh-hcCccchhhhhhhcccc
Q 018819 308 IATTGLFREHIPLFRLLFPPFQKYI-TKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 308 v~t~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~a~~i~~~ 349 (350)
|+|++.................+.. .....+|+|+|+.+++|
T Consensus 208 v~T~~~~~~~~~~~~~~~~~~~~~p~~~~~~~peevA~~v~fL 250 (305)
T PRK08303 208 LRSEMMLDAFGVTEENWRDALAKEPHFAISETPRYVGRAVAAL 250 (305)
T ss_pred cccHHHHHhhccCccchhhhhccccccccCCCHHHHHHHHHHH
Confidence 9998642110000000000011111 13345899999887754
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=269.56 Aligned_cols=222 Identities=19% Similarity=0.185 Sum_probs=180.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh---------hHHHHHHHHhccCCCceEEEEccCCCHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF---------LKAERAAKSAGMAKENYTIMHLDLASLDSVRQ 153 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~---------~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~ 153 (350)
.+++|++|||||++|||+++|+.|+++|+ +|++++|+. +..++..+++...+.++.++.||++|++++++
T Consensus 3 ~l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~ 81 (286)
T PRK07791 3 LLDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAAN 81 (286)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHH
Confidence 46889999999999999999999999996 888887765 56667777776666788899999999999999
Q ss_pred HHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCC----CCCeEEEEeccCC
Q 018819 154 FVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY----PSKRLIIVGSITG 229 (350)
Q Consensus 154 ~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~----~~g~iV~vSS~~~ 229 (350)
+++++.+.+|++|++|||||+... .++.+.+.++|++++++|+.++++++++++|+|.++.. ..|+||++||.++
T Consensus 82 ~~~~~~~~~g~id~lv~nAG~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~ 160 (286)
T PRK07791 82 LVDAAVETFGGLDVLVNNAGILRD-RMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAG 160 (286)
T ss_pred HHHHHHHhcCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhh
Confidence 999999999999999999998654 67788999999999999999999999999999875421 1369999999988
Q ss_pred CCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCccc
Q 018819 230 NTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA 309 (350)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~ 309 (350)
..+ .+++..|++||+|+++++++++.|+ .++||+||+|+|| ++
T Consensus 161 ~~~-----------------------------------~~~~~~Y~asKaal~~l~~~la~el-~~~gIrVn~v~Pg-~~ 203 (286)
T PRK07791 161 LQG-----------------------------------SVGQGNYSAAKAGIAALTLVAAAEL-GRYGVTVNAIAPA-AR 203 (286)
T ss_pred CcC-----------------------------------CCCchhhHHHHHHHHHHHHHHHHHH-HHhCeEEEEECCC-CC
Confidence 753 3577899999999999999999999 6779999999999 78
Q ss_pred CCcccccchhhHHhh-hhhhHHhhhcCccchhhhhhhcccc
Q 018819 310 TTGLFREHIPLFRLL-FPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 310 t~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
|++... ..+ ... .++.. .....+|||+|+.+++|
T Consensus 204 T~~~~~-~~~--~~~~~~~~~---~~~~~~pedva~~~~~L 238 (286)
T PRK07791 204 TRMTET-VFA--EMMAKPEEG---EFDAMAPENVSPLVVWL 238 (286)
T ss_pred CCcchh-hHH--HHHhcCccc---ccCCCCHHHHHHHHHHH
Confidence 876421 111 000 00000 01246899999888764
|
|
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=268.43 Aligned_cols=225 Identities=16% Similarity=0.127 Sum_probs=173.0
Q ss_pred cccCCCEEEEEcC--CCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhcc---------C-C---CceEEEEccC-
Q 018819 82 KTLRKGSVIITGA--SSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM---------A-K---ENYTIMHLDL- 145 (350)
Q Consensus 82 ~~l~~~~~lItGg--s~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~---------~-~---~~v~~~~~Dv- 145 (350)
++++||++||||| ++|||+++|+.|+++|+ +|++ +|+.+++++....+.. . + .....+.+|+
T Consensus 5 ~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga-~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 82 (303)
T PLN02730 5 IDLRGKRAFIAGVADDNGYGWAIAKALAAAGA-EILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAV 82 (303)
T ss_pred cCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCC-EEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeeccee
Confidence 4589999999999 89999999999999997 7887 6777776666554432 1 1 1246788999
Q ss_pred -CC------------------HHHHHHHHHHHHHcCCCCcEEEEccccCC-CCCCCCCCCHHHHHHHHhhhhHHHHHHHH
Q 018819 146 -AS------------------LDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFLLSR 205 (350)
Q Consensus 146 -s~------------------~~~v~~~~~~~~~~~g~id~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~~n~~g~~~l~~ 205 (350)
++ +++++++++++.+.+|++|+||||||+.. ...++.+.+.++|++++++|+.+++++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~ 162 (303)
T PLN02730 83 FDTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQ 162 (303)
T ss_pred cCccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHH
Confidence 43 44899999999999999999999998642 23678889999999999999999999999
Q ss_pred HHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCch-hchhhhHHHHHHH
Q 018819 206 LLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGA-KAYKDSKVCNMLT 284 (350)
Q Consensus 206 ~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~asKaa~~~~ 284 (350)
+++|.|.++ |+||++||+++..+ .++. ..|++||+|+.+|
T Consensus 163 ~~~p~m~~~----G~II~isS~a~~~~-----------------------------------~p~~~~~Y~asKaAl~~l 203 (303)
T PLN02730 163 HFGPIMNPG----GASISLTYIASERI-----------------------------------IPGYGGGMSSAKAALESD 203 (303)
T ss_pred HHHHHHhcC----CEEEEEechhhcCC-----------------------------------CCCCchhhHHHHHHHHHH
Confidence 999999763 79999999987643 2333 4799999999999
Q ss_pred HHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhhhhhh-HHhhhcCccchhhhhhhcccc
Q 018819 285 MQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPF-QKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 285 ~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~a~~i~~~ 349 (350)
+++|+.|+..++||+||+|+||+|+|++... .+......... ......++.+|+|++..++++
T Consensus 204 ~~~la~El~~~~gIrVn~V~PG~v~T~~~~~--~~~~~~~~~~~~~~~pl~r~~~peevA~~~~fL 267 (303)
T PLN02730 204 TRVLAFEAGRKYKIRVNTISAGPLGSRAAKA--IGFIDDMIEYSYANAPLQKELTADEVGNAAAFL 267 (303)
T ss_pred HHHHHHHhCcCCCeEEEEEeeCCccCchhhc--ccccHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 9999999932379999999999999987532 11000000001 111224467899998887764
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=265.01 Aligned_cols=220 Identities=13% Similarity=0.122 Sum_probs=172.4
Q ss_pred ccCCCEEEEEcCC--CchHHHHHHHHHHcCCcEEEEEecChh---HHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHH
Q 018819 83 TLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFL---KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDT 157 (350)
Q Consensus 83 ~l~~~~~lItGgs--~gIG~~ia~~la~~Ga~~Vi~~~r~~~---~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~ 157 (350)
.+++|++|||||+ +|||+++|+.|+++|+ +|++++|+.. .++++.+++ + ....++||++|++++++++++
T Consensus 7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~-~V~l~~r~~~~~~~~~~l~~~~---~-~~~~~~~Dl~~~~~v~~~~~~ 81 (272)
T PRK08159 7 LMAGKRGLILGVANNRSIAWGIAKACRAAGA-ELAFTYQGDALKKRVEPLAAEL---G-AFVAGHCDVTDEASIDAVFET 81 (272)
T ss_pred cccCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCchHHHHHHHHHHHhc---C-CceEEecCCCCHHHHHHHHHH
Confidence 4578999999997 8999999999999996 8888888632 223332322 2 356789999999999999999
Q ss_pred HHHcCCCCcEEEEccccCCC---CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCC
Q 018819 158 FRRSGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTL 234 (350)
Q Consensus 158 ~~~~~g~id~lv~~Ag~~~~---~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~ 234 (350)
+.++++++|++|||||+... ..++.+.+.++|++++++|+.++++++++++|.|.+ +|+||++||.++..+
T Consensus 82 ~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~----~g~Iv~iss~~~~~~-- 155 (272)
T PRK08159 82 LEKKWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTD----GGSILTLTYYGAEKV-- 155 (272)
T ss_pred HHHhcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCC----CceEEEEeccccccC--
Confidence 99999999999999998642 246678899999999999999999999999999864 379999999876532
Q ss_pred CCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccc
Q 018819 235 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (350)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~ 314 (350)
.+++..|++||+|+.+|+++++.|+ .++||+||+|+||+|+|++..
T Consensus 156 ---------------------------------~p~~~~Y~asKaal~~l~~~la~el-~~~gIrVn~v~PG~v~T~~~~ 201 (272)
T PRK08159 156 ---------------------------------MPHYNVMGVAKAALEASVKYLAVDL-GPKNIRVNAISAGPIKTLAAS 201 (272)
T ss_pred ---------------------------------CCcchhhhhHHHHHHHHHHHHHHHh-cccCeEEEEeecCCcCCHHHh
Confidence 3677889999999999999999999 677999999999999997532
Q ss_pred ccchhhHHhhhhhh-HHhhhcCccchhhhhhhcccc
Q 018819 315 REHIPLFRLLFPPF-QKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 315 ~~~~~~~~~~~~~~-~~~~~~~~~s~~~~a~~i~~~ 349 (350)
. .+......... ......++.+|||+|+.+++|
T Consensus 202 ~--~~~~~~~~~~~~~~~p~~r~~~peevA~~~~~L 235 (272)
T PRK08159 202 G--IGDFRYILKWNEYNAPLRRTVTIEEVGDSALYL 235 (272)
T ss_pred c--CCcchHHHHHHHhCCcccccCCHHHHHHHHHHH
Confidence 1 11000000000 012234567999999988764
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-35 Score=261.38 Aligned_cols=228 Identities=18% Similarity=0.147 Sum_probs=184.4
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChh-HHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL-KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~-~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
++++++|++|||||++|||+++|++|+++|+ +|++++|+.+ ..++..+++...+.++.++.+|++|+++++++++++.
T Consensus 3 ~~~~~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~ 81 (254)
T PRK06114 3 LFDLDGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTE 81 (254)
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 3467899999999999999999999999995 8888888753 4566666666556678899999999999999999999
Q ss_pred HcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCC
Q 018819 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (350)
+.++++|++|||||+... .++.+.+.++|++++++|+.++++++++++|.|.+++ .|+||++||.++..+.
T Consensus 82 ~~~g~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~~~------ 152 (254)
T PRK06114 82 AELGALTLAVNAAGIANA-NPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENG--GGSIVNIASMSGIIVN------ 152 (254)
T ss_pred HHcCCCCEEEECCCCCCC-CChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcC--CcEEEEECchhhcCCC------
Confidence 999999999999998654 5677889999999999999999999999999997765 4799999999887532
Q ss_pred CCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchh
Q 018819 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (350)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~ 319 (350)
+...+..|+++|+++..++++++.|+ .++||+||+|+||+|+|++.......
T Consensus 153 ---------------------------~~~~~~~Y~~sKaa~~~l~~~la~e~-~~~gi~v~~v~PG~i~t~~~~~~~~~ 204 (254)
T PRK06114 153 ---------------------------RGLLQAHYNASKAGVIHLSKSLAMEW-VGRGIRVNSISPGYTATPMNTRPEMV 204 (254)
T ss_pred ---------------------------CCCCcchHHHHHHHHHHHHHHHHHHH-hhcCeEEEEEeecCccCcccccccch
Confidence 01235789999999999999999999 67799999999999999875321110
Q ss_pred hHHhhhhhh-HHhhhcCccchhhhhhhcccc
Q 018819 320 LFRLLFPPF-QKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 320 ~~~~~~~~~-~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.. ...+ ......++.+|||+++.+++|
T Consensus 205 --~~-~~~~~~~~p~~r~~~~~dva~~~~~l 232 (254)
T PRK06114 205 --HQ-TKLFEEQTPMQRMAKVDEMVGPAVFL 232 (254)
T ss_pred --HH-HHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 00 1111 112235677899999888764
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=263.65 Aligned_cols=221 Identities=15% Similarity=0.106 Sum_probs=169.4
Q ss_pred ccCCCEEEEEcC--CCchHHHHHHHHHHcCCcEEEEEecC---hhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHH
Q 018819 83 TLRKGSVIITGA--SSGLGLATAKALAETGKWHIIMACRD---FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDT 157 (350)
Q Consensus 83 ~l~~~~~lItGg--s~gIG~~ia~~la~~Ga~~Vi~~~r~---~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~ 157 (350)
.+++|++||||| ++|||+++|++|+++|+ +|++++|. .+.++++.+++ + ...+++||++|++++++++++
T Consensus 3 ~l~~k~vlItGas~~~GIG~a~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~Dv~d~~~v~~~~~~ 77 (260)
T PRK06997 3 FLAGKRILITGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEF---G-SDLVFPCDVASDEQIDALFAS 77 (260)
T ss_pred ccCCcEEEEeCCCCCCcHHHHHHHHHHHCCC-eEEEEccchHHHHHHHHHHHhc---C-CcceeeccCCCHHHHHHHHHH
Confidence 367899999996 68999999999999995 88887654 23333333322 2 234689999999999999999
Q ss_pred HHHcCCCCcEEEEccccCCCC----CCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCC
Q 018819 158 FRRSGRPLDVLVCNAAVYLPT----AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNT 233 (350)
Q Consensus 158 ~~~~~g~id~lv~~Ag~~~~~----~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~ 233 (350)
+.++++++|++|||||+.... ..+++.+.++|++.+++|+.++++++++++|+|.+ .|+||++||..+..+
T Consensus 78 ~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~----~g~Ii~iss~~~~~~- 152 (260)
T PRK06997 78 LGQHWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSD----DASLLTLSYLGAERV- 152 (260)
T ss_pred HHHHhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCC----CceEEEEeccccccC-
Confidence 999999999999999985431 12456789999999999999999999999999943 369999999887642
Q ss_pred CCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 234 LAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.+++..|++||+|+..++++++.|+ .++||+||+|+||+|+|++.
T Consensus 153 ----------------------------------~~~~~~Y~asKaal~~l~~~la~el-~~~gIrVn~i~PG~v~T~~~ 197 (260)
T PRK06997 153 ----------------------------------VPNYNTMGLAKASLEASVRYLAVSL-GPKGIRANGISAGPIKTLAA 197 (260)
T ss_pred ----------------------------------CCCcchHHHHHHHHHHHHHHHHHHh-cccCeEEEEEeeCccccchh
Confidence 3567789999999999999999999 67799999999999999753
Q ss_pred cccchhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 314 FREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.. ..+...............++.+|||+++.+.++
T Consensus 198 ~~-~~~~~~~~~~~~~~~p~~r~~~pedva~~~~~l 232 (260)
T PRK06997 198 SG-IKDFGKILDFVESNAPLRRNVTIEEVGNVAAFL 232 (260)
T ss_pred cc-ccchhhHHHHHHhcCcccccCCHHHHHHHHHHH
Confidence 21 111111100011111234567999999988764
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-35 Score=262.59 Aligned_cols=227 Identities=18% Similarity=0.143 Sum_probs=184.4
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccC--CCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~--~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
++++|++|||||++|||++++++|+++|+ +|++++|+.++.++..+++... +.++.++.+|++|+++++++++++.+
T Consensus 5 ~l~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 83 (265)
T PRK07062 5 QLEGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEA 83 (265)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999996 8999999988777776666433 34788899999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
.++++|++|||||.... .++.+.+.++|++.+++|+.+++++++.++|.|.+++ .|+||++||..+..+
T Consensus 84 ~~g~id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~~-------- 152 (265)
T PRK07062 84 RFGGVDMLVNNAGQGRV-STFADTTDDAWRDELELKYFSVINPTRAFLPLLRASA--AASIVCVNSLLALQP-------- 152 (265)
T ss_pred hcCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccC--CcEEEEeccccccCC--------
Confidence 99999999999998643 6777889999999999999999999999999998764 479999999987643
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch--
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-- 318 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~-- 318 (350)
.++...|+++|+++.+++++++.|+ .+.||+||+|+||+|+|+++.....
T Consensus 153 ---------------------------~~~~~~y~asKaal~~~~~~la~e~-~~~gi~v~~i~PG~v~t~~~~~~~~~~ 204 (265)
T PRK07062 153 ---------------------------EPHMVATSAARAGLLNLVKSLATEL-APKGVRVNSILLGLVESGQWRRRYEAR 204 (265)
T ss_pred ---------------------------CCCchHhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecCccccchhhhHHHHh
Confidence 2566789999999999999999999 5679999999999999986532111
Q ss_pred -----hhHHhhhhh--hHHhhhcCccchhhhhhhcccc
Q 018819 319 -----PLFRLLFPP--FQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 -----~~~~~~~~~--~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
++..+.... .......++.+|+|+|+.+++|
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~p~~r~~~p~~va~~~~~L 242 (265)
T PRK07062 205 ADPGQSWEAWTAALARKKGIPLGRLGRPDEAARALFFL 242 (265)
T ss_pred hccCCChHHHHHHHhhcCCCCcCCCCCHHHHHHHHHHH
Confidence 000000000 0011224567999999887654
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-35 Score=261.97 Aligned_cols=228 Identities=11% Similarity=0.106 Sum_probs=180.2
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEec-ChhHHHHHHHHhcc-CCCceEEEEccCCCHHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r-~~~~~~~~~~~l~~-~~~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
..+++|++|||||++|||+++|+.|+++|+ +|++++| +.+..+...+++.. .+.++.+++||++|+++++++++++.
T Consensus 4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 82 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGV-NIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKID 82 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 357899999999999999999999999996 7877764 55566666555543 35678999999999999999999999
Q ss_pred HcCCCCcEEEEccccCCC-----CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCC
Q 018819 160 RSGRPLDVLVCNAAVYLP-----TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTL 234 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~-----~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~ 234 (350)
+.++++|++|||||+... ..++.+.+.++|++++++|+.+++.+++.++|.|.+.+ .|+||++||..+..+
T Consensus 83 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~~-- 158 (260)
T PRK08416 83 EDFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVG--GGSIISLSSTGNLVY-- 158 (260)
T ss_pred HhcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccC--CEEEEEEeccccccC--
Confidence 999999999999987431 24566788999999999999999999999999998754 479999999877542
Q ss_pred CCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccc
Q 018819 235 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (350)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~ 314 (350)
.+++..|++||++++.++++++.|+ .++||+|++|+||+++|++..
T Consensus 159 ---------------------------------~~~~~~Y~asK~a~~~~~~~la~el-~~~gi~v~~v~PG~i~T~~~~ 204 (260)
T PRK08416 159 ---------------------------------IENYAGHGTSKAAVETMVKYAATEL-GEKNIRVNAVSGGPIDTDALK 204 (260)
T ss_pred ---------------------------------CCCcccchhhHHHHHHHHHHHHHHh-hhhCeEEEEEeeCcccChhhh
Confidence 3567799999999999999999999 677999999999999998642
Q ss_pred ccchhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 315 REHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
. ..................++.+|+|+++.++++
T Consensus 205 ~-~~~~~~~~~~~~~~~~~~r~~~p~~va~~~~~l 238 (260)
T PRK08416 205 A-FTNYEEVKAKTEELSPLNRMGQPEDLAGACLFL 238 (260)
T ss_pred h-ccCCHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 2 111001100111111234567899999887764
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=265.48 Aligned_cols=224 Identities=18% Similarity=0.207 Sum_probs=184.5
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
.++++|++|||||++|||+++|+.|+++|+ +|++++|+.+++++..+++.. +.++..+.||++|.++++++++++.+.
T Consensus 5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (296)
T PRK05872 5 TSLAGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGG-DDRVLTVVADVTDLAAMQAAAEEAVER 82 (296)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcC-CCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999996 899999998888887777753 456777889999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|++|||||+.. ..++.+.+.++|++++++|+.|++++++.++|.|.+. .|+||++||..+..+
T Consensus 83 ~g~id~vI~nAG~~~-~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~---~g~iv~isS~~~~~~--------- 149 (296)
T PRK05872 83 FGGIDVVVANAGIAS-GGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIER---RGYVLQVSSLAAFAA--------- 149 (296)
T ss_pred cCCCCEEEECCCcCC-CcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc---CCEEEEEeCHhhcCC---------
Confidence 999999999999865 4678889999999999999999999999999998764 379999999988753
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.+++..|++||++++.+++.++.|+ .++||+|++|+||+++|++.........
T Consensus 150 --------------------------~~~~~~Y~asKaal~~~~~~l~~e~-~~~gi~v~~v~Pg~v~T~~~~~~~~~~~ 202 (296)
T PRK05872 150 --------------------------APGMAAYCASKAGVEAFANALRLEV-AHHGVTVGSAYLSWIDTDLVRDADADLP 202 (296)
T ss_pred --------------------------CCCchHHHHHHHHHHHHHHHHHHHH-HHHCcEEEEEecCcccchhhhhccccch
Confidence 3577899999999999999999998 5679999999999999987533211100
Q ss_pred HhhhhhhHH--hhhcCccchhhhhhhccc
Q 018819 322 RLLFPPFQK--YITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 322 ~~~~~~~~~--~~~~~~~s~~~~a~~i~~ 348 (350)
. ....... .......+|+++++.+++
T Consensus 203 ~-~~~~~~~~~~p~~~~~~~~~va~~i~~ 230 (296)
T PRK05872 203 A-FRELRARLPWPLRRTTSVEKCAAAFVD 230 (296)
T ss_pred h-HHHHHhhCCCcccCCCCHHHHHHHHHH
Confidence 0 0000001 112456799999998765
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=260.79 Aligned_cols=220 Identities=15% Similarity=0.116 Sum_probs=171.8
Q ss_pred ccCCCEEEEEcC--CCchHHHHHHHHHHcCCcEEEEEecCh--hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHH
Q 018819 83 TLRKGSVIITGA--SSGLGLATAKALAETGKWHIIMACRDF--LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 158 (350)
Q Consensus 83 ~l~~~~~lItGg--s~gIG~~ia~~la~~Ga~~Vi~~~r~~--~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~ 158 (350)
.+++|+++|||| ++|||+++|+.|+++|+ +|++++|+. +..++..+++. .++.+++||++|+++++++++++
T Consensus 4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~i~~~~~~~ 79 (256)
T PRK07889 4 LLEGKRILVTGVITDSSIAFHVARVAQEQGA-EVVLTGFGRALRLTERIAKRLP---EPAPVLELDVTNEEHLASLADRV 79 (256)
T ss_pred cccCCEEEEeCCCCcchHHHHHHHHHHHCCC-EEEEecCccchhHHHHHHHhcC---CCCcEEeCCCCCHHHHHHHHHHH
Confidence 468899999999 89999999999999996 899988763 33444444443 35778999999999999999999
Q ss_pred HHcCCCCcEEEEccccCCCC---CCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCC
Q 018819 159 RRSGRPLDVLVCNAAVYLPT---AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLA 235 (350)
Q Consensus 159 ~~~~g~id~lv~~Ag~~~~~---~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~ 235 (350)
.+.++++|++|||||+.... .++.+.+.++|++++++|+.+++++++.++|.|.+ +|+||++||... .
T Consensus 80 ~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~----~g~Iv~is~~~~-~---- 150 (256)
T PRK07889 80 REHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNE----GGSIVGLDFDAT-V---- 150 (256)
T ss_pred HHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhccc----CceEEEEeeccc-c----
Confidence 99999999999999986321 35667889999999999999999999999999974 369999986532 1
Q ss_pred CCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccc
Q 018819 236 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 315 (350)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~ 315 (350)
..+.+..|++||+|+.+|+++++.|+ .++||+||+|+||+|+|++...
T Consensus 151 -------------------------------~~~~~~~Y~asKaal~~l~~~la~el-~~~gIrvn~v~PG~v~T~~~~~ 198 (256)
T PRK07889 151 -------------------------------AWPAYDWMGVAKAALESTNRYLARDL-GPRGIRVNLVAAGPIRTLAAKA 198 (256)
T ss_pred -------------------------------cCCccchhHHHHHHHHHHHHHHHHHh-hhcCeEEEeeccCcccChhhhc
Confidence 13566789999999999999999999 6779999999999999986421
Q ss_pred cchhhHHhhhhhhHH-hhhc-Cccchhhhhhhcccc
Q 018819 316 EHIPLFRLLFPPFQK-YITK-GYVSEDEAGKRLAQV 349 (350)
Q Consensus 316 ~~~~~~~~~~~~~~~-~~~~-~~~s~~~~a~~i~~~ 349 (350)
....... ...+.. .... ++.+|+|+|+.++++
T Consensus 199 -~~~~~~~-~~~~~~~~p~~~~~~~p~evA~~v~~l 232 (256)
T PRK07889 199 -IPGFELL-EEGWDERAPLGWDVKDPTPVARAVVAL 232 (256)
T ss_pred -ccCcHHH-HHHHHhcCccccccCCHHHHHHHHHHH
Confidence 1110110 011111 1112 467999999988754
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=254.01 Aligned_cols=189 Identities=16% Similarity=0.179 Sum_probs=167.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
++++|+++||||++|||+++|+.|+++|+ +|++++|+.+.+++..+++...+.++..+.||++|+++++++++++.+++
T Consensus 2 ~~~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (227)
T PRK08862 2 DIKSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQF 80 (227)
T ss_pred CCCCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHh
Confidence 56889999999999999999999999995 89999999988888877776666778889999999999999999999998
Q ss_pred C-CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 163 R-PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 163 g-~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
+ ++|++|||||......++.+.+.++|.+.+++|+.+++.+++.++|+|.+++. +|+||++||..+.
T Consensus 81 g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~-~g~Iv~isS~~~~----------- 148 (227)
T PRK08862 81 NRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNK-KGVIVNVISHDDH----------- 148 (227)
T ss_pred CCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CceEEEEecCCCC-----------
Confidence 8 99999999986544467888899999999999999999999999999986531 4799999997543
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
+++..|++||+++.+|+++++.|+ .++||+||+|+||+++|+.
T Consensus 149 ---------------------------~~~~~Y~asKaal~~~~~~la~el-~~~~Irvn~v~PG~i~t~~ 191 (227)
T PRK08862 149 ---------------------------QDLTGVESSNALVSGFTHSWAKEL-TPFNIRVGGVVPSIFSANG 191 (227)
T ss_pred ---------------------------CCcchhHHHHHHHHHHHHHHHHHH-hhcCcEEEEEecCcCcCCC
Confidence 345689999999999999999999 6779999999999999973
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=262.98 Aligned_cols=224 Identities=19% Similarity=0.205 Sum_probs=179.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh--hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF--LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~--~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
.+++|++|||||++|||+++|++|+++|+ +|++.+|+. +..+++.+.+...+.++.++.||++|.++++++++++.+
T Consensus 46 ~~~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 124 (294)
T PRK07985 46 RLKDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHK 124 (294)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999995 888887643 344555555544566788999999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
.++++|++|||||......++.+.+.++|++++++|+.+++++++++.|.|.+ +|+||++||..+..+
T Consensus 125 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~----~g~iv~iSS~~~~~~-------- 192 (294)
T PRK07985 125 ALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPK----GASIITTSSIQAYQP-------- 192 (294)
T ss_pred HhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhc----CCEEEEECCchhccC--------
Confidence 99999999999997544456778899999999999999999999999999865 369999999987643
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~ 320 (350)
.+++..|++||++++.+++.++.|+ .++||+||+|+||+|+|++......+.
T Consensus 193 ---------------------------~~~~~~Y~asKaal~~l~~~la~el-~~~gIrvn~i~PG~v~t~~~~~~~~~~ 244 (294)
T PRK07985 193 ---------------------------SPHLLDYAATKAAILNYSRGLAKQV-AEKGIRVNIVAPGPIWTALQISGGQTQ 244 (294)
T ss_pred ---------------------------CCCcchhHHHHHHHHHHHHHHHHHH-hHhCcEEEEEECCcCccccccccCCCH
Confidence 3567789999999999999999998 677999999999999999742211110
Q ss_pred HHhhhhhhHH-hhhcCccchhhhhhhcccc
Q 018819 321 FRLLFPPFQK-YITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 ~~~~~~~~~~-~~~~~~~s~~~~a~~i~~~ 349 (350)
. ..+.+.. ....++.+|+|+|+.+++|
T Consensus 245 ~--~~~~~~~~~~~~r~~~pedva~~~~fL 272 (294)
T PRK07985 245 D--KIPQFGQQTPMKRAGQPAELAPVYVYL 272 (294)
T ss_pred H--HHHHHhccCCCCCCCCHHHHHHHHHhh
Confidence 0 0111111 1224567999999988765
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=261.86 Aligned_cols=192 Identities=19% Similarity=0.241 Sum_probs=172.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|++|||||++|||+++|++|+++|+ +|++++|+.+.+++..+++...+.++.++.||++|.++++++++++.+.+
T Consensus 3 ~~~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 81 (275)
T PRK05876 3 GFPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLL 81 (275)
T ss_pred CcCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999995 89999999888888877776666778899999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|+||||||+... .++.+.+.++|++++++|+.|++++++.++|.|.+++. +|+||++||.++..+
T Consensus 82 g~id~li~nAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~-~g~iv~isS~~~~~~---------- 149 (275)
T PRK05876 82 GHVDVVFSNAGIVVG-GPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGT-GGHVVFTASFAGLVP---------- 149 (275)
T ss_pred CCCCEEEECCCcCCC-CCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-CCEEEEeCChhhccC----------
Confidence 999999999998644 67788999999999999999999999999999976542 379999999988743
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.++...|++||+++.+|+++++.|+ ..+||++++|+||+++|++.
T Consensus 150 -------------------------~~~~~~Y~asK~a~~~~~~~l~~e~-~~~gi~v~~v~Pg~v~t~~~ 194 (275)
T PRK05876 150 -------------------------NAGLGAYGVAKYGVVGLAETLAREV-TADGIGVSVLCPMVVETNLV 194 (275)
T ss_pred -------------------------CCCCchHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEEeCccccccc
Confidence 3567899999999999999999999 56799999999999999865
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=257.33 Aligned_cols=228 Identities=18% Similarity=0.167 Sum_probs=186.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|+++||||++|||.+++++|+++|+ +|++++|+.+..++..+++...+.++.++.+|++|.++++++++++.+.+
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 82 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAY 82 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 46889999999999999999999999995 89999999887777777776666789999999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|++|||||......++.+.+.++|++++++|+.++++++++++|.|.+++ .++||++||..+..+
T Consensus 83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~ii~~sS~~~~~~---------- 150 (253)
T PRK06172 83 GRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQG--GGAIVNTASVAGLGA---------- 150 (253)
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEECchhhccC----------
Confidence 99999999999865445577889999999999999999999999999987655 479999999887643
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.+++..|+++|++++.++++++.++ .++||+|++|+||+|+|+++.........
T Consensus 151 -------------------------~~~~~~Y~~sKaa~~~~~~~la~e~-~~~~i~v~~i~PG~v~t~~~~~~~~~~~~ 204 (253)
T PRK06172 151 -------------------------APKMSIYAASKHAVIGLTKSAAIEY-AKKGIRVNAVCPAVIDTDMFRRAYEADPR 204 (253)
T ss_pred -------------------------CCCCchhHHHHHHHHHHHHHHHHHh-cccCeEEEEEEeCCccChhhhhhcccChH
Confidence 3567899999999999999999999 66799999999999999875321100000
Q ss_pred hhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 323 LLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
............+..+|+++++.++++
T Consensus 205 ~~~~~~~~~~~~~~~~p~~ia~~~~~l 231 (253)
T PRK06172 205 KAEFAAAMHPVGRIGKVEEVASAVLYL 231 (253)
T ss_pred HHHHHhccCCCCCccCHHHHHHHHHHH
Confidence 000011111224567899999988764
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=255.98 Aligned_cols=228 Identities=21% Similarity=0.224 Sum_probs=186.3
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+++++|++|||||++|||.+++++|+++|+ +|++++|+.+..++..+++...+.++.+++||++|.++++++++++.+.
T Consensus 4 ~~l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (252)
T PRK07035 4 FDLTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRER 82 (252)
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 357889999999999999999999999995 9999999988888777777666667889999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|++|||||......++.+.+.++|++.+++|+.++++++++++|+|.+.+ .++||++||..+..+
T Consensus 83 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~~--------- 151 (252)
T PRK07035 83 HGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQG--GGSIVNVASVNGVSP--------- 151 (252)
T ss_pred cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC--CcEEEEECchhhcCC---------
Confidence 999999999999754335667789999999999999999999999999987754 479999999877642
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.+++..|++||++++.++++++.|+ .++||+|++|+||.|+|++.... ....
T Consensus 152 --------------------------~~~~~~Y~~sK~al~~~~~~l~~e~-~~~gi~v~~i~PG~v~t~~~~~~-~~~~ 203 (252)
T PRK07035 152 --------------------------GDFQGIYSITKAAVISMTKAFAKEC-APFGIRVNALLPGLTDTKFASAL-FKND 203 (252)
T ss_pred --------------------------CCCCcchHHHHHHHHHHHHHHHHHH-hhcCEEEEEEeeccccCcccccc-cCCH
Confidence 3567899999999999999999999 67799999999999999864321 1100
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.............++.+|+|+|+.++++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~va~~~~~l 231 (252)
T PRK07035 204 AILKQALAHIPLRRHAEPSEMAGAVLYL 231 (252)
T ss_pred HHHHHHHccCCCCCcCCHHHHHHHHHHH
Confidence 1100011111234577999999988754
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=257.18 Aligned_cols=225 Identities=16% Similarity=0.165 Sum_probs=178.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
++++|++|||||++|||+++|++|+++|+ +|++.+++.. ++..+.+...+.++.++++|++|.++++++++++.+++
T Consensus 7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~-~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 83 (253)
T PRK08993 7 SLEGKVAVVTGCDTGLGQGMALGLAEAGC-DIVGINIVEP--TETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEF 83 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEecCcch--HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999996 8887776532 23333443345578899999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|++|||||.... .++.+.+.++|++++++|+.+++++++++.|.|.+++. +|+||++||..+..+
T Consensus 84 ~~~D~li~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~-~g~iv~isS~~~~~~---------- 151 (253)
T PRK08993 84 GHIDILVNNAGLIRR-EDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGN-GGKIINIASMLSFQG---------- 151 (253)
T ss_pred CCCCEEEECCCCCCC-CCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCC-CeEEEEECchhhccC----------
Confidence 999999999998643 56778899999999999999999999999999876532 379999999987643
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.+....|++||++++.++++++.|+ .++||+||+|+||+++|++... ..+...
T Consensus 152 -------------------------~~~~~~Y~~sKaa~~~~~~~la~e~-~~~gi~v~~v~pG~v~T~~~~~-~~~~~~ 204 (253)
T PRK08993 152 -------------------------GIRVPSYTASKSGVMGVTRLMANEW-AKHNINVNAIAPGYMATNNTQQ-LRADEQ 204 (253)
T ss_pred -------------------------CCCCcchHHHHHHHHHHHHHHHHHh-hhhCeEEEEEeeCcccCcchhh-hccchH
Confidence 2455789999999999999999998 6779999999999999987532 111000
Q ss_pred hhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 323 LLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
............++.+|+|+|+.++++
T Consensus 205 ~~~~~~~~~p~~r~~~p~eva~~~~~l 231 (253)
T PRK08993 205 RSAEILDRIPAGRWGLPSDLMGPVVFL 231 (253)
T ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 000111112235678999999987654
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=256.37 Aligned_cols=227 Identities=17% Similarity=0.182 Sum_probs=185.4
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+.+.+|++|||||++|||++++++|+++|+ +|++++|+.+..++..+++...+.++.++.+|++|+++++++++.+.+.
T Consensus 5 ~~l~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (254)
T PRK08085 5 FSLAGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKD 83 (254)
T ss_pred ccCCCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHh
Confidence 357899999999999999999999999995 9999999988888877777665667888999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|++|||||.... .++.+.+.++|++++++|+.+++++++++.+.+.+++ .|+||++||..+..+
T Consensus 84 ~~~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~~--------- 151 (254)
T PRK08085 84 IGPIDVLINNAGIQRR-HPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQ--AGKIINICSMQSELG--------- 151 (254)
T ss_pred cCCCCEEEECCCcCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEEccchhccC---------
Confidence 9999999999998643 5677889999999999999999999999999987654 479999999877643
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.++...|+++|++++.++++++.++ .++||++|+|+||+++|++....... .
T Consensus 152 --------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~pG~~~t~~~~~~~~~-~ 203 (254)
T PRK08085 152 --------------------------RDTITPYAASKGAVKMLTRGMCVEL-ARHNIQVNGIAPGYFKTEMTKALVED-E 203 (254)
T ss_pred --------------------------CCCCcchHHHHHHHHHHHHHHHHHH-HhhCeEEEEEEeCCCCCcchhhhccC-H
Confidence 2466789999999999999999999 67799999999999999875321100 0
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..............+.+|+|+++.++++
T Consensus 204 ~~~~~~~~~~p~~~~~~~~~va~~~~~l 231 (254)
T PRK08085 204 AFTAWLCKRTPAARWGDPQELIGAAVFL 231 (254)
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 0000001111234567899998876543
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=254.75 Aligned_cols=225 Identities=19% Similarity=0.175 Sum_probs=178.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
+|++|||||++|||++++++|+++|+ +|++++|+.+..++..+++...+.++.+++||++|+++++++++++.+.++++
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 57999999999999999999999995 99999999877777777665555678899999999999999999999999999
Q ss_pred cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcc
Q 018819 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (350)
|++|||||.... .++.+.+.++|++++++|+.+++++++++++.|.+... .|+||++||..+..+
T Consensus 80 d~lI~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~g~ii~isS~~~~~~------------- 144 (252)
T PRK07677 80 DALINNAAGNFI-CPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGI-KGNIINMVATYAWDA------------- 144 (252)
T ss_pred cEEEECCCCCCC-CCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCC-CEEEEEEcChhhccC-------------
Confidence 999999997543 56778899999999999999999999999999865431 379999999987642
Q ss_pred ccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhhh
Q 018819 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 325 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~ 325 (350)
.++...|++||++++.+++.++.|+..++||++++|+||+|+|++.............
T Consensus 145 ----------------------~~~~~~Y~~sKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~~~~~~~~~~~~~~~~~ 202 (252)
T PRK07677 145 ----------------------GPGVIHSAAAKAGVLAMTRTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWESEEAAK 202 (252)
T ss_pred ----------------------CCCCcchHHHHHHHHHHHHHHHHHhCcccCeEEEEEeecccccccccccccCCHHHHH
Confidence 2466789999999999999999998545699999999999997543221110000000
Q ss_pred hhhHHhhhcCccchhhhhhhccc
Q 018819 326 PPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 326 ~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
.........++.+|+++++.+.+
T Consensus 203 ~~~~~~~~~~~~~~~~va~~~~~ 225 (252)
T PRK07677 203 RTIQSVPLGRLGTPEEIAGLAYF 225 (252)
T ss_pred HHhccCCCCCCCCHHHHHHHHHH
Confidence 00001112456788998887654
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=255.57 Aligned_cols=221 Identities=18% Similarity=0.149 Sum_probs=177.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
++++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++ +.++.+++||++|+++++++++++.+.+
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASL---GERARFIATDITDDAAIERAVATVVARF 78 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCeeEEEEecCCCHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999995 9999999987776666555 3568899999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|++|||||.... ..+ +.+.++|++.+++|+.+++++++.++|.|. ++ .|+||++||.++..+
T Consensus 79 g~id~lv~~ag~~~~-~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~-~~--~g~ii~isS~~~~~~---------- 143 (261)
T PRK08265 79 GRVDILVNLACTYLD-DGL-ASSRADWLAALDVNLVSAAMLAQAAHPHLA-RG--GGAIVNFTSISAKFA---------- 143 (261)
T ss_pred CCCCEEEECCCCCCC-CcC-cCCHHHHHHHHhHhhHHHHHHHHHHHHHHh-cC--CcEEEEECchhhccC----------
Confidence 999999999998643 233 568999999999999999999999999987 33 479999999988753
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.++...|+++|+++..+++.++.|+ .+.||++|+|+||+++|++...-. +...
T Consensus 144 -------------------------~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~PG~~~t~~~~~~~-~~~~ 196 (261)
T PRK08265 144 -------------------------QTGRWLYPASKAAIRQLTRSMAMDL-APDGIRVNSVSPGWTWSRVMDELS-GGDR 196 (261)
T ss_pred -------------------------CCCCchhHHHHHHHHHHHHHHHHHh-cccCEEEEEEccCCccChhhhhhc-ccch
Confidence 2467789999999999999999999 667999999999999998642110 0000
Q ss_pred hhhhhhH--HhhhcCccchhhhhhhcccc
Q 018819 323 LLFPPFQ--KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~--~~~~~~~~s~~~~a~~i~~~ 349 (350)
....... .....++.+|+|+|+.++++
T Consensus 197 ~~~~~~~~~~~p~~r~~~p~dva~~~~~l 225 (261)
T PRK08265 197 AKADRVAAPFHLLGRVGDPEEVAQVVAFL 225 (261)
T ss_pred hHHHHhhcccCCCCCccCHHHHHHHHHHH
Confidence 0000010 01224567899999888764
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=254.33 Aligned_cols=221 Identities=20% Similarity=0.189 Sum_probs=178.9
Q ss_pred ccCCCEEEEEcCC--CchHHHHHHHHHHcCCcEEEEEecC-----------hhHHHHHHHHhccCCCceEEEEccCCCHH
Q 018819 83 TLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRD-----------FLKAERAAKSAGMAKENYTIMHLDLASLD 149 (350)
Q Consensus 83 ~l~~~~~lItGgs--~gIG~~ia~~la~~Ga~~Vi~~~r~-----------~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~ 149 (350)
.+++|++|||||+ +|||+++|++|+++|+ +|++.+|+ .+...+..+++...+.++.++++|++|.+
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~ 81 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGA-DIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQND 81 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCC-eEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHH
Confidence 5789999999999 4999999999999996 77776532 22333455556666778999999999999
Q ss_pred HHHHHHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCC
Q 018819 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229 (350)
Q Consensus 150 ~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~ 229 (350)
+++++++++.+.++++|++|||||.... .++.+.+.++|++++++|+.+++++++.++|.|.++. .|+||++||..+
T Consensus 82 ~i~~~~~~~~~~~g~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~g~iv~isS~~~ 158 (256)
T PRK12859 82 APKELLNKVTEQLGYPHILVNNAAYSTN-NDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKS--GGRIINMTSGQF 158 (256)
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CeEEEEEccccc
Confidence 9999999999999999999999998644 6778899999999999999999999999999997655 479999999887
Q ss_pred CCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCccc
Q 018819 230 NTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA 309 (350)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~ 309 (350)
..+ .+++..|++||++++.|+++++.++ .++||+|++|+||+++
T Consensus 159 ~~~-----------------------------------~~~~~~Y~~sK~a~~~l~~~la~~~-~~~~i~v~~v~PG~i~ 202 (256)
T PRK12859 159 QGP-----------------------------------MVGELAYAATKGAIDALTSSLAAEV-AHLGITVNAINPGPTD 202 (256)
T ss_pred CCC-----------------------------------CCCchHHHHHHHHHHHHHHHHHHHh-hhhCeEEEEEEEcccc
Confidence 642 3577899999999999999999999 5679999999999999
Q ss_pred CCcccccchhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 310 TTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 310 t~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
|+++..... . ............+|+|+|+.++++
T Consensus 203 t~~~~~~~~---~---~~~~~~~~~~~~~~~d~a~~~~~l 236 (256)
T PRK12859 203 TGWMTEEIK---Q---GLLPMFPFGRIGEPKDAARLIKFL 236 (256)
T ss_pred CCCCCHHHH---H---HHHhcCCCCCCcCHHHHHHHHHHH
Confidence 985432110 0 001111224457899999887654
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=258.67 Aligned_cols=262 Identities=60% Similarity=0.998 Sum_probs=187.4
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|++|||||++|||+++++.|+++|+ +|++++|+.++.++..+++...+.++.++.+|++|.++++++++++.+.+
T Consensus 3 ~~~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (322)
T PRK07453 3 QDAKGTVIITGASSGVGLYAAKALAKRGW-HVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALG 81 (322)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 45788999999999999999999999995 89999999888877777775445578899999999999999999988878
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC--
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP-- 240 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~-- 240 (350)
+++|+||||||+........+.+.++|+.++++|+.|+++++++++|.|.+++.+.++||++||.....+...+..+.
T Consensus 82 ~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~~~~~~~~~~~~ 161 (322)
T PRK07453 82 KPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANPKELGGKIPIPA 161 (322)
T ss_pred CCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCccccCCccCCCC
Confidence 899999999998643233346789999999999999999999999999987653236999999987654321111110
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCccc-CCcccccchh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA-TTGLFREHIP 319 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~-t~~~~~~~~~ 319 (350)
...+.++..+..... ....+.+..++.+...|+.||.++..+++.+++++....||++++|+||+|. |++. ....+
T Consensus 162 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~~~-~~~~~ 238 (322)
T PRK07453 162 PADLGDLSGFEAGFK--APISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVADTPLF-RNTPP 238 (322)
T ss_pred ccchhhhhcchhccc--ccccccCccCCCccchhhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCCccc-ccCCH
Confidence 011111111100000 0001112233456789999999999999999999854569999999999995 6543 22222
Q ss_pred hHHhhhhhhHHhhhcCccchhhhhhhccc
Q 018819 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
......+.+.+.+..+..++++.++.+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (322)
T PRK07453 239 LFQKLFPWFQKNITGGYVSQELAGERVAQ 267 (322)
T ss_pred HHHHHHHHHHHHHhhceecHHHHhhHHHH
Confidence 22223333434334455677777766654
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-34 Score=255.25 Aligned_cols=225 Identities=19% Similarity=0.190 Sum_probs=181.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|++|||||++|||++++++|+++|+ +|++++|+ +..+++.+.+...+.++.++.||++|.++++++++++.+.+
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 89 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHG-TNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEF 89 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC-cHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999996 88888887 45555555555556678999999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|++|||||.... .++.+.+.++|++.+++|+.++++++++++|.|.+++ .|+||++||..+..+
T Consensus 90 g~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~~---------- 156 (258)
T PRK06935 90 GKIDILVNNAGTIRR-APLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQG--SGKIINIASMLSFQG---------- 156 (258)
T ss_pred CCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcC--CeEEEEECCHHhccC----------
Confidence 999999999998643 5677888999999999999999999999999998765 479999999987643
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.+....|+++|++++.+++++++|+ .++||+||+|+||+|+|++..... +...
T Consensus 157 -------------------------~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~i~PG~v~t~~~~~~~-~~~~ 209 (258)
T PRK06935 157 -------------------------GKFVPAYTASKHGVAGLTKAFANEL-AAYNIQVNAIAPGYIKTANTAPIR-ADKN 209 (258)
T ss_pred -------------------------CCCchhhHHHHHHHHHHHHHHHHHh-hhhCeEEEEEEeccccccchhhcc-cChH
Confidence 2456799999999999999999999 677999999999999998642111 0000
Q ss_pred hhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 323 LLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.......+....++.+|+|+++.++++
T Consensus 210 ~~~~~~~~~~~~~~~~~~dva~~~~~l 236 (258)
T PRK06935 210 RNDEILKRIPAGRWGEPDDLMGAAVFL 236 (258)
T ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 000111122235678899988887653
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=256.29 Aligned_cols=215 Identities=20% Similarity=0.195 Sum_probs=173.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
++++|++|||||++|||+++|++|+++|+ +|++++|+.... .++.+++||++|+++++++++++.+++
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~~~~~-----------~~~~~~~~D~~~~~~i~~~~~~~~~~~ 70 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIKEPSY-----------NDVDYFKVDVSNKEQVIKGIDYVISKY 70 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCcccc-----------CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 56889999999999999999999999995 899999875331 257889999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|+||||||.... .++.+.+.++|++++++|+.|+++++++++|+|.+++ .|+||++||..+..+
T Consensus 71 ~~id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~~---------- 137 (258)
T PRK06398 71 GRIDILVNNAGIESY-GAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQD--KGVIINIASVQSFAV---------- 137 (258)
T ss_pred CCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CeEEEEeCcchhccC----------
Confidence 999999999998643 6788889999999999999999999999999997754 479999999887642
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccc-----
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH----- 317 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~----- 317 (350)
.+++..|++||++++.+++.++.|+ .+ +|+||+|+||+|+|++.....
T Consensus 138 -------------------------~~~~~~Y~~sKaal~~~~~~la~e~-~~-~i~vn~i~PG~v~T~~~~~~~~~~~~ 190 (258)
T PRK06398 138 -------------------------TRNAAAYVTSKHAVLGLTRSIAVDY-AP-TIRCVAVCPGSIRTPLLEWAAELEVG 190 (258)
T ss_pred -------------------------CCCCchhhhhHHHHHHHHHHHHHHh-CC-CCEEEEEecCCccchHHhhhhhcccc
Confidence 3577899999999999999999998 45 499999999999998753210
Q ss_pred -hhh--HHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 318 -IPL--FRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 318 -~~~--~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.+. .+............++.+|+|+|+.++++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~p~eva~~~~~l 225 (258)
T PRK06398 191 KDPEHVERKIREWGEMHPMKRVGKPEEVAYVVAFL 225 (258)
T ss_pred CChhhhHHHHHhhhhcCCcCCCcCHHHHHHHHHHH
Confidence 000 00000000011224567899999988764
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=259.48 Aligned_cols=225 Identities=23% Similarity=0.218 Sum_probs=180.4
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh--hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF--LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~--~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
..+++|++|||||++|||+++|+.|+++|+ +|+++.++. ...++..+.++..+.++.++.||++|.++++++++++.
T Consensus 51 ~~l~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 129 (300)
T PRK06128 51 GRLQGRKALITGADSGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAV 129 (300)
T ss_pred cccCCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHH
Confidence 357899999999999999999999999996 888877653 23445555665566778899999999999999999999
Q ss_pred HcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCC
Q 018819 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (350)
+.++++|+||||||.......+.+.+.++|++++++|+.|+++++++++|.|.+ +++||++||+.+..+
T Consensus 130 ~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~----~~~iv~~sS~~~~~~------- 198 (300)
T PRK06128 130 KELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPP----GASIINTGSIQSYQP------- 198 (300)
T ss_pred HHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCc----CCEEEEECCccccCC-------
Confidence 999999999999998644466778899999999999999999999999999865 369999999987643
Q ss_pred CCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchh
Q 018819 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (350)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~ 319 (350)
.+++..|++||++++.|+++++.++ .+.||+||+|+||+|+|++......+
T Consensus 199 ----------------------------~~~~~~Y~asK~a~~~~~~~la~el-~~~gI~v~~v~PG~i~t~~~~~~~~~ 249 (300)
T PRK06128 199 ----------------------------SPTLLDYASTKAAIVAFTKALAKQV-AEKGIRVNAVAPGPVWTPLQPSGGQP 249 (300)
T ss_pred ----------------------------CCCchhHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEEECcCcCCCcccCCCC
Confidence 2567789999999999999999998 67799999999999999975321111
Q ss_pred hHHhhhhhhH-HhhhcCccchhhhhhhcccc
Q 018819 320 LFRLLFPPFQ-KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 320 ~~~~~~~~~~-~~~~~~~~s~~~~a~~i~~~ 349 (350)
... ...+. .....++..|+|+|+.++++
T Consensus 250 ~~~--~~~~~~~~p~~r~~~p~dva~~~~~l 278 (300)
T PRK06128 250 PEK--IPDFGSETPMKRPGQPVEMAPLYVLL 278 (300)
T ss_pred HHH--HHHHhcCCCCCCCcCHHHHHHHHHHH
Confidence 000 01111 11234567889988877654
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=256.61 Aligned_cols=229 Identities=22% Similarity=0.216 Sum_probs=185.6
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+.+++|+++||||++|||++++++|+++|+ +|++++|+.+..++..+++...+.++.+++||++|++++..+++++.+.
T Consensus 6 ~~~~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 84 (278)
T PRK08277 6 FSLKGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILED 84 (278)
T ss_pred eccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999999995 8999999987777777777666667899999999999999999999999
Q ss_pred CCCCcEEEEccccCCCC--------------CCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEecc
Q 018819 162 GRPLDVLVCNAAVYLPT--------------AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 227 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~--------------~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~ 227 (350)
++++|++|||||...+. .++.+.+.++|++.+++|+.++++++++++|.|.+++ .|+||++||.
T Consensus 85 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~ii~isS~ 162 (278)
T PRK08277 85 FGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRK--GGNIINISSM 162 (278)
T ss_pred cCCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC--CcEEEEEccc
Confidence 99999999999975321 2466788999999999999999999999999998765 4799999999
Q ss_pred CCCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCc
Q 018819 228 TGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGC 307 (350)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~ 307 (350)
.+..+ .++...|++||++++.++++++.++ .++||+||+|+||+
T Consensus 163 ~~~~~-----------------------------------~~~~~~Y~~sK~a~~~l~~~la~e~-~~~girvn~v~Pg~ 206 (278)
T PRK08277 163 NAFTP-----------------------------------LTKVPAYSAAKAAISNFTQWLAVHF-AKVGIRVNAIAPGF 206 (278)
T ss_pred hhcCC-----------------------------------CCCCchhHHHHHHHHHHHHHHHHHh-CccCeEEEEEEecc
Confidence 88642 3567789999999999999999999 67799999999999
Q ss_pred ccCCcccccchh----hHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 308 IATTGLFREHIP----LFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 308 v~t~~~~~~~~~----~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
|+|++....... ...............++.+|+|+|+.+++|
T Consensus 207 v~t~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~~~~l 252 (278)
T PRK08277 207 FLTEQNRALLFNEDGSLTERANKILAHTPMGRFGKPEELLGTLLWL 252 (278)
T ss_pred CcCcchhhhhccccccchhHHHHHhccCCccCCCCHHHHHHHHHHH
Confidence 999864210000 000000011112235667999999988764
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=254.53 Aligned_cols=225 Identities=19% Similarity=0.235 Sum_probs=186.1
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+++++|+++||||++|||++++++|+++|+ +|++++|+.++.++..+.+...+.++.+++||++|+++++++++++.+.
T Consensus 6 ~~~~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (265)
T PRK07097 6 FSLKGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKE 84 (265)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 356889999999999999999999999995 8889999988887777777666678999999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|++|||||.... .++.+.+.++|++++++|+.+++.+++.++|+|.+++ .|+||++||..+..+
T Consensus 85 ~~~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~~--------- 152 (265)
T PRK07097 85 VGVIDILVNNAGIIKR-IPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKG--HGKIINICSMMSELG--------- 152 (265)
T ss_pred CCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcC--CcEEEEEcCccccCC---------
Confidence 9999999999998654 5677889999999999999999999999999998765 579999999887643
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch---
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI--- 318 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~--- 318 (350)
.++...|+++|++++.++++++.++ .+.||+|++|+||+|+|++......
T Consensus 153 --------------------------~~~~~~Y~~sKaal~~l~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~ 205 (265)
T PRK07097 153 --------------------------RETVSAYAAAKGGLKMLTKNIASEY-GEANIQCNGIGPGYIATPQTAPLRELQA 205 (265)
T ss_pred --------------------------CCCCccHHHHHHHHHHHHHHHHHHh-hhcCceEEEEEeccccccchhhhhhccc
Confidence 2466789999999999999999999 6779999999999999986532111
Q ss_pred -----hhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 319 -----PLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 -----~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
++..+ .........+.+|+|+|+.++++
T Consensus 206 ~~~~~~~~~~---~~~~~~~~~~~~~~dva~~~~~l 238 (265)
T PRK07097 206 DGSRHPFDQF---IIAKTPAARWGDPEDLAGPAVFL 238 (265)
T ss_pred cccchhHHHH---HHhcCCccCCcCHHHHHHHHHHH
Confidence 11111 01111224567889988877653
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=252.98 Aligned_cols=221 Identities=20% Similarity=0.220 Sum_probs=175.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEe-cChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc-
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS- 161 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~-r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~- 161 (350)
+++|++|||||++|||+++|+.|+++|+ +|++.. |+.+..++...++...+.++..+.+|+++.++++.+++++.+.
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNEL 80 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHh
Confidence 4688999999999999999999999995 777764 5666666666666655667888999999999999999887652
Q ss_pred ---CC--CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCC
Q 018819 162 ---GR--PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236 (350)
Q Consensus 162 ---~g--~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~ 236 (350)
++ ++|+||||||+.. ..++.+.+.++|++++++|+.++++++++++|.|.+. |+||++||.++..+
T Consensus 81 ~~~~g~~~id~lv~~Ag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~----g~iv~isS~~~~~~---- 151 (252)
T PRK12747 81 QNRTGSTKFDILINNAGIGP-GAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDN----SRIINISSAATRIS---- 151 (252)
T ss_pred hhhcCCCCCCEEEECCCcCC-CCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcC----CeEEEECCcccccC----
Confidence 33 8999999999853 3567788999999999999999999999999999753 69999999988643
Q ss_pred CCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccccc
Q 018819 237 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 316 (350)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~ 316 (350)
.++...|++||++++.++++++.|+ .++||+||+|+||+|+|++...
T Consensus 152 -------------------------------~~~~~~Y~~sKaa~~~~~~~la~e~-~~~girvn~v~Pg~v~t~~~~~- 198 (252)
T PRK12747 152 -------------------------------LPDFIAYSMTKGAINTMTFTLAKQL-GARGITVNAILPGFIKTDMNAE- 198 (252)
T ss_pred -------------------------------CCCchhHHHHHHHHHHHHHHHHHHH-hHcCCEEEEEecCCccCchhhh-
Confidence 3567799999999999999999999 6779999999999999987532
Q ss_pred chhhHHhhhhhhHHh--hhcCccchhhhhhhcccc
Q 018819 317 HIPLFRLLFPPFQKY--ITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 317 ~~~~~~~~~~~~~~~--~~~~~~s~~~~a~~i~~~ 349 (350)
..+... ...+.+. ...++.+|+|+|+.+.++
T Consensus 199 ~~~~~~--~~~~~~~~~~~~~~~~~~dva~~~~~l 231 (252)
T PRK12747 199 LLSDPM--MKQYATTISAFNRLGEVEDIADTAAFL 231 (252)
T ss_pred cccCHH--HHHHHHhcCcccCCCCHHHHHHHHHHH
Confidence 111000 0111111 124567999999887654
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=252.59 Aligned_cols=223 Identities=16% Similarity=0.146 Sum_probs=178.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++...+ ++.+++||++|+++++++++++.+.++++|+
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~ 79 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNEENLEKALKELKEYG-EVYAVKADLSDKDDLKNLVKEAWELLGGIDA 79 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEcCCCCHHHHHHHHHHHHHhcCCCCE
Confidence 699999999999999999999995 89999999888877777775443 6888999999999999999999999999999
Q ss_pred EEEccccCCC-CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccc
Q 018819 168 LVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (350)
Q Consensus 168 lv~~Ag~~~~-~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (350)
||||||.... ...+.+.+.++|.+.+++|+.+++.+++.++|.|.+.. ..|+||++||.++..+
T Consensus 80 li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~~g~iv~isS~~~~~~-------------- 144 (259)
T PRK08340 80 LVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKK-MKGVLVYLSSVSVKEP-------------- 144 (259)
T ss_pred EEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcC-CCCEEEEEeCcccCCC--------------
Confidence 9999997532 24566788999999999999999999999999886432 1479999999987632
Q ss_pred cccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchh-------
Q 018819 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP------- 319 (350)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~------- 319 (350)
.++...|++||+++.+++++++.++ .++||+||+|+||+++|++.......
T Consensus 145 ---------------------~~~~~~y~~sKaa~~~~~~~la~e~-~~~gI~v~~v~pG~v~t~~~~~~~~~~~~~~~~ 202 (259)
T PRK08340 145 ---------------------MPPLVLADVTRAGLVQLAKGVSRTY-GGKGIRAYTVLLGSFDTPGARENLARIAEERGV 202 (259)
T ss_pred ---------------------CCCchHHHHHHHHHHHHHHHHHHHh-CCCCEEEEEeccCcccCccHHHHHHhhhhccCC
Confidence 3567789999999999999999999 67799999999999999975321100
Q ss_pred -hHH-hhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 320 -LFR-LLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 320 -~~~-~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
... .......+....++.+|+|+|+.+++|
T Consensus 203 ~~~~~~~~~~~~~~p~~r~~~p~dva~~~~fL 234 (259)
T PRK08340 203 SFEETWEREVLERTPLKRTGRWEELGSLIAFL 234 (259)
T ss_pred chHHHHHHHHhccCCccCCCCHHHHHHHHHHH
Confidence 000 000011112235678999999988764
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=262.14 Aligned_cols=221 Identities=20% Similarity=0.188 Sum_probs=185.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++++++||||++|||++++++|+++|+ +|++++|+.+.+++..+++...+.++.++.||++|+++++++++.+.+.+
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence 46789999999999999999999999995 89999999888888888887777789999999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|++|||||.... .++.+.+.++|++++++|+.|++++++.++|.|.+++ .|+||++||..+..+
T Consensus 84 g~iD~lInnAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~--~g~iV~isS~~~~~~---------- 150 (334)
T PRK07109 84 GPIDTWVNNAMVTVF-GPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRD--RGAIIQVGSALAYRS---------- 150 (334)
T ss_pred CCCCEEEECCCcCCC-CchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEeCChhhccC----------
Confidence 999999999998643 6777899999999999999999999999999998765 479999999988743
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcC-CCCcEEEEeeCCcccCCcccccchhhH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE-ETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~-~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.+.+..|++||+++..|+++++.|+.. ..+|++++|+||.|+||++......+.
T Consensus 151 -------------------------~~~~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~~~~~~~~~~ 205 (334)
T PRK07109 151 -------------------------IPLQSAYCAAKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTPQFDWARSRLP 205 (334)
T ss_pred -------------------------CCcchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCchhhhhhhhcc
Confidence 356789999999999999999999842 358999999999999986422110000
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhccc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
. .........+|+++|+.+++
T Consensus 206 ~------~~~~~~~~~~pe~vA~~i~~ 226 (334)
T PRK07109 206 V------EPQPVPPIYQPEVVADAILY 226 (334)
T ss_pred c------cccCCCCCCCHHHHHHHHHH
Confidence 0 00111345789999998865
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=257.96 Aligned_cols=203 Identities=36% Similarity=0.514 Sum_probs=167.8
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccC--CCceEEEEccCCCHHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~--~~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
.++++|+++||||++|||+++|++|+++|+ +|++++|+.++.++..+++... +.++.++.||++|.++++++++++.
T Consensus 10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~ 88 (313)
T PRK05854 10 PDLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLR 88 (313)
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHH
Confidence 467899999999999999999999999995 9999999988887777766432 3468899999999999999999999
Q ss_pred HcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCC
Q 018819 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (350)
+.++++|+||||||+... ...+.+.++|+.++++|+.|++++++.++|.|.+. .++||++||.++..+...
T Consensus 89 ~~~~~iD~li~nAG~~~~--~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~---~~riv~vsS~~~~~~~~~---- 159 (313)
T PRK05854 89 AEGRPIHLLINNAGVMTP--PERQTTADGFELQFGTNHLGHFALTAHLLPLLRAG---RARVTSQSSIAARRGAIN---- 159 (313)
T ss_pred HhCCCccEEEECCccccC--CccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhC---CCCeEEEechhhcCCCcC----
Confidence 999999999999998643 33356889999999999999999999999999764 369999999987643210
Q ss_pred CCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhc-CCCCcEEEEeeCCcccCCcc
Q 018819 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFH-EETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~-~~~gi~v~~v~PG~v~t~~~ 313 (350)
+.+ .....++++...|+.||+++..+++.+++++. ...||+||+|+||+|+|++.
T Consensus 160 ----~~~---------------~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T~~~ 215 (313)
T PRK05854 160 ----WDD---------------LNWERSYAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTNLL 215 (313)
T ss_pred ----ccc---------------ccccccCcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceeccCcc
Confidence 000 01112346778999999999999999998752 35689999999999999865
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=251.80 Aligned_cols=188 Identities=17% Similarity=0.197 Sum_probs=163.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|++|||||++|||++++++|+++|+ +|++++|+. ..++..+++...+.++.++.||++|.+++.++++++.+.+
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRSE-LVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAF 82 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCch-HHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence 46789999999999999999999999995 899999985 3445555565556678899999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|++|||||......++.+.+.++|++.+++|+.+++++++.++|.|.+++ .|+||++||..+..
T Consensus 83 ~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~~sS~~~~~----------- 149 (260)
T PRK12823 83 GRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQG--GGAIVNVSSIATRG----------- 149 (260)
T ss_pred CCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCeEEEEcCccccC-----------
Confidence 99999999999753346777889999999999999999999999999998765 47999999986531
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
++...|++||++++.+++.++.++ .++||+|++|+||+|+||+
T Consensus 150 --------------------------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~ 192 (260)
T PRK12823 150 --------------------------INRVPYSAAKGGVNALTASLAFEY-AEHGIRVNAVAPGGTEAPP 192 (260)
T ss_pred --------------------------CCCCccHHHHHHHHHHHHHHHHHh-cccCcEEEEEecCccCCcc
Confidence 234579999999999999999999 5679999999999999985
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=251.26 Aligned_cols=208 Identities=14% Similarity=0.147 Sum_probs=172.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCC-ceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE-NYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~-~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
++++||||++|||+++|++|+ +| .+|++++|+.++++++.++++..+. .+.+++||++|+++++++++++.+.+|++
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g-~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 78 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HG-EDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEI 78 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CC-CEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCC
Confidence 479999999999999999999 58 5999999999888888888765543 47889999999999999999999999999
Q ss_pred cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcc
Q 018819 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (350)
|++|||||+... ....+.+.+++.+++++|+.+++++++.++|.|.+++. +|+||++||.++..+
T Consensus 79 d~lv~nag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~-~g~Iv~isS~~~~~~------------- 143 (246)
T PRK05599 79 SLAVVAFGILGD-QERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTA-PAAIVAFSSIAGWRA------------- 143 (246)
T ss_pred CEEEEecCcCCC-chhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC-CCEEEEEeccccccC-------------
Confidence 999999998644 34456677888899999999999999999999976531 379999999988753
Q ss_pred ccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhhh
Q 018819 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 325 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~ 325 (350)
.++...|++||+|+.++++.++.|+ .++||+||+|+||+|+|++.... .+.
T Consensus 144 ----------------------~~~~~~Y~asKaa~~~~~~~la~el-~~~~I~v~~v~PG~v~T~~~~~~-~~~----- 194 (246)
T PRK05599 144 ----------------------RRANYVYGSTKAGLDAFCQGLADSL-HGSHVRLIIARPGFVIGSMTTGM-KPA----- 194 (246)
T ss_pred ----------------------CcCCcchhhHHHHHHHHHHHHHHHh-cCCCceEEEecCCcccchhhcCC-CCC-----
Confidence 2567799999999999999999999 56799999999999999864221 110
Q ss_pred hhhHHhhhcCccchhhhhhhccc
Q 018819 326 PPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 326 ~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
....+|||+|+.+++
T Consensus 195 --------~~~~~pe~~a~~~~~ 209 (246)
T PRK05599 195 --------PMSVYPRDVAAAVVS 209 (246)
T ss_pred --------CCCCCHHHHHHHHHH
Confidence 012578888877654
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=251.86 Aligned_cols=223 Identities=18% Similarity=0.200 Sum_probs=173.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|+++||||++|||+++|+.|+++|+ +|+++.++.+... +++... ++.++.||++|+++++++++++.+.+
T Consensus 4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~---~~l~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~ 77 (255)
T PRK06463 4 RFKGKVALITGGTRGIGRAIAEAFLREGA-KVAVLYNSAENEA---KELREK--GVFTIKCDVGNRDQVKKSKEVVEKEF 77 (255)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCcHHHH---HHHHhC--CCeEEEecCCCHHHHHHHHHHHHHHc
Confidence 46789999999999999999999999996 7777766543222 122211 46789999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|++|||||+... .++.+.+.++|++++++|+.+++++++.++|.|.+++ .|+||++||..+...
T Consensus 78 ~~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~--~g~iv~isS~~~~~~---------- 144 (255)
T PRK06463 78 GRVDVLVNNAGIMYL-MPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSK--NGAIVNIASNAGIGT---------- 144 (255)
T ss_pred CCCCEEEECCCcCCC-CChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC--CcEEEEEcCHHhCCC----------
Confidence 999999999998643 5677889999999999999999999999999998654 479999999877531
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh--
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL-- 320 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~-- 320 (350)
+.++...|++||++++.++++++.|+ .+.||+|++|+||+|+|++......+.
T Consensus 145 ------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~ 199 (255)
T PRK06463 145 ------------------------AAEGTTFYAITKAGIIILTRRLAFEL-GKYGIRVNAVAPGWVETDMTLSGKSQEEA 199 (255)
T ss_pred ------------------------CCCCccHhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCCCCCchhhcccCccch
Confidence 12456789999999999999999998 677999999999999998753211110
Q ss_pred HHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 ~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.........+.....+.+|+|+|+.++++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~va~~~~~l 228 (255)
T PRK06463 200 EKLRELFRNKTVLKTTGKPEDIANIVLFL 228 (255)
T ss_pred HHHHHHHHhCCCcCCCcCHHHHHHHHHHH
Confidence 00000011111234567899999887754
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=253.35 Aligned_cols=223 Identities=18% Similarity=0.126 Sum_probs=177.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|++|||||++|||+++|++|+++|+ +|++++|+.+..+++.+++ +.++.+++||++|+++++++++++.+.+
T Consensus 3 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (263)
T PRK06200 3 WLHGQVALITGGGSGIGRALVERFLAEGA-RVAVLERSAEKLASLRQRF---GDHVLVVEGDVTSYADNQRAVDQTVDAF 78 (263)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCcceEEEccCCCHHHHHHHHHHHHHhc
Confidence 46889999999999999999999999995 8999999987777666554 3467889999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHH----HHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEG----FELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~----~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (350)
+++|++|||||+.....++.+.+.++ |++++++|+.+++.+++.++|.|.++ +|+||++||.++..+
T Consensus 79 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~---~g~iv~~sS~~~~~~------ 149 (263)
T PRK06200 79 GKLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKAS---GGSMIFTLSNSSFYP------ 149 (263)
T ss_pred CCCCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhc---CCEEEEECChhhcCC------
Confidence 99999999999864334555666665 89999999999999999999998765 379999999987643
Q ss_pred CCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch
Q 018819 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (350)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~ 318 (350)
.++...|++||++++.++++++.|+ .+ +|+||+|+||+|+|++......
T Consensus 150 -----------------------------~~~~~~Y~~sK~a~~~~~~~la~el-~~-~Irvn~i~PG~i~t~~~~~~~~ 198 (263)
T PRK06200 150 -----------------------------GGGGPLYTASKHAVVGLVRQLAYEL-AP-KIRVNGVAPGGTVTDLRGPASL 198 (263)
T ss_pred -----------------------------CCCCchhHHHHHHHHHHHHHHHHHH-hc-CcEEEEEeCCccccCCcCcccc
Confidence 2456789999999999999999999 45 5999999999999986422110
Q ss_pred h-----hHH---hhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 319 P-----LFR---LLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ~-----~~~---~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
. +.. ............++.+|+|+++.+++|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~eva~~~~fl 237 (263)
T PRK06200 199 GQGETSISDSPGLADMIAAITPLQFAPQPEDHTGPYVLL 237 (263)
T ss_pred CCCCcccccccchhHHhhcCCCCCCCCCHHHHhhhhhhe
Confidence 0 000 000001111235678999999988765
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=250.57 Aligned_cols=225 Identities=20% Similarity=0.189 Sum_probs=183.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
+|++|||||++|||++++++|+++|+ +|++++|+.+..++...++...+.++.+++||++|+++++++++++.++++++
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 80 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDL 80 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 57999999999999999999999995 89999999887777777776556678899999999999999999999999999
Q ss_pred cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcc
Q 018819 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (350)
|++|||||+... .++.+.+.++|++++++|+.+++.+++.+++.|.+.+. .++||++||..+..+
T Consensus 81 d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~~~------------- 145 (256)
T PRK08643 81 NVVVNNAGVAPT-TPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGH-GGKIINATSQAGVVG------------- 145 (256)
T ss_pred CEEEECCCCCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CCEEEEECccccccC-------------
Confidence 999999998543 66778899999999999999999999999999876532 369999999887653
Q ss_pred ccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh-----
Q 018819 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL----- 320 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~----- 320 (350)
.++...|+++|++++.+++.++.++ .+.||+|++|+||+++|+++.......
T Consensus 146 ----------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~ 202 (256)
T PRK08643 146 ----------------------NPELAVYSSTKFAVRGLTQTAARDL-ASEGITVNAYAPGIVKTPMMFDIAHQVGENAG 202 (256)
T ss_pred ----------------------CCCCchhHHHHHHHHHHHHHHHHHh-cccCcEEEEEeeCCCcChhhhHHHhhhccccC
Confidence 2466789999999999999999998 677999999999999999763211000
Q ss_pred --HHhhhhhhH-HhhhcCccchhhhhhhcccc
Q 018819 321 --FRLLFPPFQ-KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 --~~~~~~~~~-~~~~~~~~s~~~~a~~i~~~ 349 (350)
..+....+. .....++.+|+|+++.+.+|
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~L 234 (256)
T PRK08643 203 KPDEWGMEQFAKDITLGRLSEPEDVANCVSFL 234 (256)
T ss_pred CCchHHHHHHhccCCCCCCcCHHHHHHHHHHH
Confidence 000011111 12234567899999987654
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=252.96 Aligned_cols=223 Identities=17% Similarity=0.158 Sum_probs=174.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|+++||||++|||+++|+.|+++|+ +|++++|+.+..+++.+. .+.++.++.+|++|.+++.++++++.+.+
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~l~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (262)
T TIGR03325 2 RLKGEVVLVTGGASGLGRAIVDRFVAEGA-RVAVLDKSAAGLQELEAA---HGDAVVGVEGDVRSLDDHKEAVARCVAAF 77 (262)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhh---cCCceEEEEeccCCHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999995 899999987766655433 24568889999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCH----HHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTA----EGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~----~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (350)
+++|++|||||+.....++.+.+. ++|++++++|+.++++++++++|.|.+.+ |+||++||..+..+
T Consensus 78 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~---g~iv~~sS~~~~~~------ 148 (262)
T TIGR03325 78 GKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASR---GSVIFTISNAGFYP------ 148 (262)
T ss_pred CCCCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcC---CCEEEEeccceecC------
Confidence 999999999997533233434333 57999999999999999999999997643 68999999887642
Q ss_pred CCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch
Q 018819 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (350)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~ 318 (350)
.++...|++||++++.+++.++.|+ .+. |+||+|+||+|+|++......
T Consensus 149 -----------------------------~~~~~~Y~~sKaa~~~l~~~la~e~-~~~-irvn~i~PG~i~t~~~~~~~~ 197 (262)
T TIGR03325 149 -----------------------------NGGGPLYTAAKHAVVGLVKELAFEL-APY-VRVNGVAPGGMSSDLRGPKSL 197 (262)
T ss_pred -----------------------------CCCCchhHHHHHHHHHHHHHHHHhh-ccC-eEEEEEecCCCcCCCcccccc
Confidence 2456789999999999999999999 555 999999999999987532111
Q ss_pred hhHHh------hhhhhHH-hhhcCccchhhhhhhcccc
Q 018819 319 PLFRL------LFPPFQK-YITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ~~~~~------~~~~~~~-~~~~~~~s~~~~a~~i~~~ 349 (350)
..... ......+ ....++.+|+|+|+.++++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~p~~r~~~p~eva~~~~~l 235 (262)
T TIGR03325 198 GMADKSISTVPLGDMLKSVLPIGRMPDAEEYTGAYVFF 235 (262)
T ss_pred ccccccccccchhhhhhhcCCCCCCCChHHhhhheeee
Confidence 00000 0001111 1235678999999887764
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=250.74 Aligned_cols=228 Identities=21% Similarity=0.244 Sum_probs=184.6
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccC--CCceEEEEccCCCHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTF 158 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~--~~~v~~~~~Dvs~~~~v~~~~~~~ 158 (350)
++.+++|+++||||++|||++++++|+++|+ +|++++|+.+..++..+++... +.++.++.||++++++++++++.+
T Consensus 4 ~~~~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (257)
T PRK09242 4 RWRLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWV 82 (257)
T ss_pred ccccCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 3467899999999999999999999999995 8999999988877777776543 567899999999999999999999
Q ss_pred HHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCC
Q 018819 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (350)
Q Consensus 159 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (350)
.+.++++|++|||||... ..++.+.+.++|++.+++|+.++++++++++|.|.+++ .++||++||..+..+
T Consensus 83 ~~~~g~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~ii~~sS~~~~~~------ 153 (257)
T PRK09242 83 EDHWDGLHILVNNAGGNI-RKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHA--SSAIVNIGSVSGLTH------ 153 (257)
T ss_pred HHHcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC--CceEEEECccccCCC------
Confidence 999999999999999853 35666889999999999999999999999999998765 479999999987643
Q ss_pred CCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch
Q 018819 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (350)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~ 318 (350)
.++...|+++|++++.++++++.++ .++||++++|+||+|+|++.... .
T Consensus 154 -----------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~~i~v~~i~Pg~i~t~~~~~~-~ 202 (257)
T PRK09242 154 -----------------------------VRSGAPYGMTKAALLQMTRNLAVEW-AEDGIRVNAVAPWYIRTPLTSGP-L 202 (257)
T ss_pred -----------------------------CCCCcchHHHHHHHHHHHHHHHHHH-HHhCeEEEEEEECCCCCcccccc-c
Confidence 3566789999999999999999998 56799999999999999875321 1
Q ss_pred hhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
+..........+.......+|+++++.+..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l 233 (257)
T PRK09242 203 SDPDYYEQVIERTPMRRVGEPEEVAAAVAFL 233 (257)
T ss_pred CChHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 1111100111111224456888888877543
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=252.59 Aligned_cols=227 Identities=17% Similarity=0.182 Sum_probs=181.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|++|||||++|||++++++|+++|+ +|++++|+.+..++..+++.. +.++.++++|++|.++++++++++.+.+
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 92 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDLQDDLGQNVCDSLGG-EPNVCFFHCDVTVEDDVSRAVDFTVDKF 92 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcC-CCceEEEEeecCCHHHHHHHHHHHHHHh
Confidence 56899999999999999999999999995 899999987776666666642 4578899999999999999999999999
Q ss_pred CCCcEEEEccccCCC-CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 163 g~id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
+++|+||||||.... ...+.+.+.++|++++++|+.|++++++++.+.|.+++ .|+||++||..+..+.
T Consensus 93 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~ii~isS~~~~~~~-------- 162 (280)
T PLN02253 93 GTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLK--KGSIVSLCSVASAIGG-------- 162 (280)
T ss_pred CCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC--CceEEEecChhhcccC--------
Confidence 999999999998643 24577889999999999999999999999999987654 4799999999886532
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
++...|++||++++.+++.++.|+ .++||+|++|+||+++|++......+..
T Consensus 163 ---------------------------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~i~pg~v~t~~~~~~~~~~~ 214 (280)
T PLN02253 163 ---------------------------LGPHAYTGSKHAVLGLTRSVAAEL-GKHGIRVNCVSPYAVPTALALAHLPEDE 214 (280)
T ss_pred ---------------------------CCCcccHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCccccccccccccccc
Confidence 355689999999999999999999 6679999999999999986432111100
Q ss_pred --HhhhhhhHHhh------hcCccchhhhhhhcccc
Q 018819 322 --RLLFPPFQKYI------TKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 --~~~~~~~~~~~------~~~~~s~~~~a~~i~~~ 349 (350)
......+.... .....+|+|+|+.++++
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~~~~~~~~dva~~~~~l 250 (280)
T PLN02253 215 RTEDALAGFRAFAGKNANLKGVELTVDDVANAVLFL 250 (280)
T ss_pred chhhhhhhhHHHhhcCCCCcCCCCCHHHHHHHHHhh
Confidence 00001111111 12346899999888764
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=276.24 Aligned_cols=222 Identities=22% Similarity=0.248 Sum_probs=181.5
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
...+|++|||||++|||+++|++|+++|+ +|++++|+.+.++++.+++ +.++..+.+|++|+++++++++++.+.+
T Consensus 266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 341 (520)
T PRK06484 266 AESPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAEAL---GDEHLSVQADITDEAAVESAFAQIQARW 341 (520)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCceeEEEccCCCHHHHHHHHHHHHHHc
Confidence 45799999999999999999999999995 9999999987777766655 3467789999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|+||||||+.....++.+.+.++|++++++|+.|++++++.++|.|.+ .|+||++||.++..+
T Consensus 342 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~----~g~iv~isS~~~~~~---------- 407 (520)
T PRK06484 342 GRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQ----GGVIVNLGSIASLLA---------- 407 (520)
T ss_pred CCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhcc----CCEEEEECchhhcCC----------
Confidence 999999999998644456778899999999999999999999999999932 479999999988753
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.+++..|++||++++++++.++.|+ .++||+||+|+||+|+|++..... ....
T Consensus 408 -------------------------~~~~~~Y~asKaal~~l~~~la~e~-~~~gI~vn~v~PG~v~t~~~~~~~-~~~~ 460 (520)
T PRK06484 408 -------------------------LPPRNAYCASKAAVTMLSRSLACEW-APAGIRVNTVAPGYIETPAVLALK-ASGR 460 (520)
T ss_pred -------------------------CCCCchhHHHHHHHHHHHHHHHHHh-hhhCeEEEEEEeCCccCchhhhhc-cccH
Confidence 3577899999999999999999999 677999999999999998753211 0000
Q ss_pred hhhhhhHH-hhhcCccchhhhhhhcccc
Q 018819 323 LLFPPFQK-YITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~~-~~~~~~~s~~~~a~~i~~~ 349 (350)
.....+.+ ....++.+|+|+|+.++++
T Consensus 461 ~~~~~~~~~~~~~~~~~~~dia~~~~~l 488 (520)
T PRK06484 461 ADFDSIRRRIPLGRLGDPEEVAEAIAFL 488 (520)
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 00111111 1224567999999887754
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=248.15 Aligned_cols=225 Identities=19% Similarity=0.251 Sum_probs=178.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
++++|++|||||++|||.++|++|+++|+ +|++++|+.. .+..+.+...+.++.++.+|+++++++..+++++.+.+
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGRSEP--SETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEF 78 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCchH--HHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 46889999999999999999999999995 8999998752 23334444445678899999999999999999999888
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|++|||||.... ..+.+.+.++|++++++|+.+++++++++++.|.+++. .|+||++||..+..+
T Consensus 79 ~~~d~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~g~iv~~sS~~~~~~---------- 146 (248)
T TIGR01832 79 GHIDILVNNAGIIRR-ADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGR-GGKIINIASMLSFQG---------- 146 (248)
T ss_pred CCCCEEEECCCCCCC-CChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-CeEEEEEecHHhccC----------
Confidence 999999999998654 56667889999999999999999999999999876431 369999999877642
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.+....|++||++++.++++++.++ .++||+|++|+||+|+|++......+...
T Consensus 147 -------------------------~~~~~~Y~~sKaa~~~~~~~la~e~-~~~gi~v~~v~pg~v~t~~~~~~~~~~~~ 200 (248)
T TIGR01832 147 -------------------------GIRVPSYTASKHGVAGLTKLLANEW-AAKGINVNAIAPGYMATNNTQALRADEDR 200 (248)
T ss_pred -------------------------CCCCchhHHHHHHHHHHHHHHHHHh-CccCcEEEEEEECcCcCcchhccccChHH
Confidence 2355689999999999999999999 67799999999999999865321111000
Q ss_pred hhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 323 LLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
......+....++.+|+|+|+.++++
T Consensus 201 -~~~~~~~~~~~~~~~~~dva~~~~~l 226 (248)
T TIGR01832 201 -NAAILERIPAGRWGTPDDIGGPAVFL 226 (248)
T ss_pred -HHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 00111112235678999999887653
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=249.61 Aligned_cols=225 Identities=21% Similarity=0.265 Sum_probs=184.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
++++|++|||||++|||+++|++|+++|+ +|++.+|+.++.++..+.++..+.++.++++|++|+++++++++++.+.+
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 56899999999999999999999999995 89999999887777777776656678999999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|++|||||.... .++.+.+.++|++++++|+.+++++++++.+.|.+++ .|+||++||..+..+
T Consensus 86 ~~~d~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~g~iv~iss~~~~~~---------- 152 (255)
T PRK07523 86 GPIDILVNNAGMQFR-TPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARG--AGKIINIASVQSALA---------- 152 (255)
T ss_pred CCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC--CeEEEEEccchhccC----------
Confidence 999999999998644 6777889999999999999999999999999998754 479999999876532
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.+++..|+++|++++.+++.++.++ .+.||+|++|+||+++|++.... .+...
T Consensus 153 -------------------------~~~~~~y~~sK~a~~~~~~~~a~e~-~~~gi~v~~i~pg~~~t~~~~~~-~~~~~ 205 (255)
T PRK07523 153 -------------------------RPGIAPYTATKGAVGNLTKGMATDW-AKHGLQCNAIAPGYFDTPLNAAL-VADPE 205 (255)
T ss_pred -------------------------CCCCccHHHHHHHHHHHHHHHHHHh-hHhCeEEEEEEECcccCchhhhh-ccCHH
Confidence 3567899999999999999999998 66799999999999999864221 11000
Q ss_pred hhhhhhH-HhhhcCccchhhhhhhcccc
Q 018819 323 LLFPPFQ-KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~-~~~~~~~~s~~~~a~~i~~~ 349 (350)
. ...+. .....++..|+|+|+.++++
T Consensus 206 ~-~~~~~~~~~~~~~~~~~dva~~~~~l 232 (255)
T PRK07523 206 F-SAWLEKRTPAGRWGKVEELVGACVFL 232 (255)
T ss_pred H-HHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 0 01111 11224567899988877543
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-33 Score=248.25 Aligned_cols=224 Identities=18% Similarity=0.198 Sum_probs=182.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|+++||||++|||++++++|+++|+ +|++++|+.+..+...+++...+.++.++.||++|.++++++++.+.+.+
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 86 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKL 86 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46799999999999999999999999995 88899998877777777766556678899999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|++|||||.... .++ +.+.++|+..+++|+.+++++++++.|.|.+.+ .|+||++||.++..+
T Consensus 87 ~~~d~li~~ag~~~~-~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~~---------- 152 (255)
T PRK06113 87 GKVDILVNNAGGGGP-KPF-DMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG--GGVILTITSMAAENK---------- 152 (255)
T ss_pred CCCCEEEECCCCCCC-CCC-CCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcC--CcEEEEEecccccCC----------
Confidence 999999999998643 344 678999999999999999999999999987654 469999999887643
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.++...|+++|++++.+++.++.++ .+.||+||+|+||+++|++......|...
T Consensus 153 -------------------------~~~~~~Y~~sK~a~~~~~~~la~~~-~~~~i~v~~v~pg~~~t~~~~~~~~~~~~ 206 (255)
T PRK06113 153 -------------------------NINMTSYASSKAAASHLVRNMAFDL-GEKNIRVNGIAPGAILTDALKSVITPEIE 206 (255)
T ss_pred -------------------------CCCcchhHHHHHHHHHHHHHHHHHh-hhhCeEEEEEecccccccccccccCHHHH
Confidence 2466789999999999999999998 67799999999999999875432112110
Q ss_pred hhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 323 LLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
...........+.+|+|+++.++++
T Consensus 207 --~~~~~~~~~~~~~~~~d~a~~~~~l 231 (255)
T PRK06113 207 --QKMLQHTPIRRLGQPQDIANAALFL 231 (255)
T ss_pred --HHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 0001111124467999999887654
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=229.83 Aligned_cols=186 Identities=24% Similarity=0.284 Sum_probs=165.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+.|.|+|||||++|||+++|++|.+.| ..||+++|+++.+++..++.. .+....||+.|.++++++++.++++|
T Consensus 2 k~tgnTiLITGG~sGIGl~lak~f~elg-N~VIi~gR~e~~L~e~~~~~p----~~~t~v~Dv~d~~~~~~lvewLkk~~ 76 (245)
T COG3967 2 KTTGNTILITGGASGIGLALAKRFLELG-NTVIICGRNEERLAEAKAENP----EIHTEVCDVADRDSRRELVEWLKKEY 76 (245)
T ss_pred cccCcEEEEeCCcchhhHHHHHHHHHhC-CEEEEecCcHHHHHHHHhcCc----chheeeecccchhhHHHHHHHHHhhC
Confidence 5678999999999999999999999999 799999999999888877653 67888999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCC-CCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKE-PTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~-~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
+.++++|||||+....... .+...++.++.+++|+.+++.|++.++|++.+++ .+.||+|||..+..
T Consensus 77 P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~--~a~IInVSSGLafv---------- 144 (245)
T COG3967 77 PNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQP--EATIINVSSGLAFV---------- 144 (245)
T ss_pred CchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCC--CceEEEeccccccC----------
Confidence 9999999999998653322 3456777889999999999999999999999886 47999999998875
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCC
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~ 311 (350)
|....+.||++|+|+..|+.+|+.++ +..+|.|.-+.|..|+|+
T Consensus 145 -------------------------Pm~~~PvYcaTKAaiHsyt~aLR~Ql-k~t~veVIE~~PP~V~t~ 188 (245)
T COG3967 145 -------------------------PMASTPVYCATKAAIHSYTLALREQL-KDTSVEVIELAPPLVDTT 188 (245)
T ss_pred -------------------------cccccccchhhHHHHHHHHHHHHHHh-hhcceEEEEecCCceecC
Confidence 34566799999999999999999998 677999999999999996
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=252.53 Aligned_cols=217 Identities=20% Similarity=0.204 Sum_probs=178.2
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
.+.+.+++++||||+||||+++|+.|+++|+ +|++++|+.+.+++..+++...+.++.++.+|++|.+++.++++.+.+
T Consensus 35 ~~~~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 113 (293)
T PRK05866 35 PVDLTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEK 113 (293)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999999999995 999999998888887777765566788999999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCCCC--CHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTF--TAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~--~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (350)
.++++|++|||||+... .++.+. +.++++.++++|+.|+++++++++|.|.+.+ .|+||++||.++..+
T Consensus 114 ~~g~id~li~~AG~~~~-~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~~------ 184 (293)
T PRK05866 114 RIGGVDILINNAGRSIR-RPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERG--DGHIINVATWGVLSE------ 184 (293)
T ss_pred HcCCCCEEEECCCCCCC-cchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CcEEEEECChhhcCC------
Confidence 99999999999998644 344332 4688999999999999999999999998765 479999999755421
Q ss_pred CCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch
Q 018819 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (350)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~ 318 (350)
+.++...|++||+++++++++++.|+ .++||+|++|+||.|+|+++.....
T Consensus 185 ----------------------------~~p~~~~Y~asKaal~~l~~~la~e~-~~~gI~v~~v~pg~v~T~~~~~~~~ 235 (293)
T PRK05866 185 ----------------------------ASPLFSVYNASKAALSAVSRVIETEW-GDRGVHSTTLYYPLVATPMIAPTKA 235 (293)
T ss_pred ----------------------------CCCCcchHHHHHHHHHHHHHHHHHHh-cccCcEEEEEEcCcccCcccccccc
Confidence 12466789999999999999999999 6779999999999999987532100
Q ss_pred hhHHhhhhhhHHhhhcCccchhhhhhhccc
Q 018819 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
.......+||++|+.++.
T Consensus 236 ------------~~~~~~~~pe~vA~~~~~ 253 (293)
T PRK05866 236 ------------YDGLPALTADEAAEWMVT 253 (293)
T ss_pred ------------ccCCCCCCHHHHHHHHHH
Confidence 001123688888877653
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=246.90 Aligned_cols=226 Identities=19% Similarity=0.152 Sum_probs=182.8
Q ss_pred ccCCCEEEEEcCCC-chHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhcc-CC-CceEEEEccCCCHHHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASS-GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-AK-ENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 83 ~l~~~~~lItGgs~-gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~-~~-~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
.+++|++|||||+| |||+++++.|+++|+ +|++++|+.++.++..++++. .+ .++.++++|++++++++++++++.
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 92 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAV 92 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 45789999999985 999999999999995 899999988777777666643 23 468899999999999999999999
Q ss_pred HcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCC
Q 018819 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (350)
+.++++|++|||||.... ..+.+.+.++|++.+++|+.+++++++.++|.|.+... .|+||++||..+..+
T Consensus 93 ~~~g~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~g~iv~~ss~~~~~~------- 163 (262)
T PRK07831 93 ERLGRLDVLVNNAGLGGQ-TPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGH-GGVIVNNASVLGWRA------- 163 (262)
T ss_pred HHcCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CcEEEEeCchhhcCC-------
Confidence 888999999999998543 67778899999999999999999999999999876531 379999999877642
Q ss_pred CCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchh
Q 018819 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (350)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~ 319 (350)
.++...|+++|++++++++.++.|+ .++||+|++|+||+++|++......+
T Consensus 164 ----------------------------~~~~~~Y~~sKaal~~~~~~la~e~-~~~gI~v~~i~Pg~~~t~~~~~~~~~ 214 (262)
T PRK07831 164 ----------------------------QHGQAHYAAAKAGVMALTRCSALEA-AEYGVRINAVAPSIAMHPFLAKVTSA 214 (262)
T ss_pred ----------------------------CCCCcchHHHHHHHHHHHHHHHHHh-CccCeEEEEEeeCCccCcccccccCH
Confidence 2466789999999999999999998 67799999999999999975322111
Q ss_pred hHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.............+..+|+|+|+.++++
T Consensus 215 --~~~~~~~~~~~~~r~~~p~~va~~~~~l 242 (262)
T PRK07831 215 --ELLDELAAREAFGRAAEPWEVANVIAFL 242 (262)
T ss_pred --HHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 0000011112235577999999988764
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=250.16 Aligned_cols=187 Identities=26% Similarity=0.278 Sum_probs=167.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.++++++|||||+||||++++++|+++|+ +|++++|+.+..++..+++. ++.++.||++|+++++++++.+.+.+
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~~~ 76 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARALAALGA-RVAIGDLDEALAKETAAELG----LVVGGPLDVTDPASFAAFLDAVEADL 76 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhc----cceEEEccCCCHHHHHHHHHHHHHHc
Confidence 46788999999999999999999999995 89999999887777666553 47789999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|++|||||+... ..+.+.+.++|++++++|+.|++++++.++|.|.+++ .|+||++||.++..+
T Consensus 77 ~~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~~---------- 143 (273)
T PRK07825 77 GPIDVLVNNAGVMPV-GPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRG--RGHVVNVASLAGKIP---------- 143 (273)
T ss_pred CCCCEEEECCCcCCC-CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCEEEEEcCccccCC----------
Confidence 999999999998754 6777889999999999999999999999999998765 479999999988753
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.++...|++||+++..++++++.++ .+.||++++|+||+++|++.
T Consensus 144 -------------------------~~~~~~Y~asKaa~~~~~~~l~~el-~~~gi~v~~v~Pg~v~t~~~ 188 (273)
T PRK07825 144 -------------------------VPGMATYCASKHAVVGFTDAARLEL-RGTGVHVSVVLPSFVNTELI 188 (273)
T ss_pred -------------------------CCCCcchHHHHHHHHHHHHHHHHHh-hccCcEEEEEeCCcCcchhh
Confidence 3577899999999999999999998 67799999999999999865
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=247.45 Aligned_cols=227 Identities=20% Similarity=0.182 Sum_probs=181.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC-hhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD-FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~-~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
.+++|++|||||++|||+++|++|+++|+ +|+++.|+ .+..+...+++...+.++.++.+|++|.+++.++++.+.+.
T Consensus 4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~-~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~ 82 (261)
T PRK08936 4 DLEGKVVVITGGSTGLGRAMAVRFGKEKA-KVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKE 82 (261)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999996 77777774 44555566666555677889999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|++|||||.... .++.+.+.++|++.+++|+.+++++++.+++.|.+... .|+||++||..+..+
T Consensus 83 ~g~id~lv~~ag~~~~-~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~-~g~iv~~sS~~~~~~--------- 151 (261)
T PRK08936 83 FGTLDVMINNAGIENA-VPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDI-KGNIINMSSVHEQIP--------- 151 (261)
T ss_pred cCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CcEEEEEccccccCC---------
Confidence 9999999999998654 56778899999999999999999999999999976532 379999999876532
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.+++..|+++|+++..++++++.++ .+.||+|++|+||+|+|++..... +..
T Consensus 152 --------------------------~~~~~~Y~~sKaa~~~~~~~la~e~-~~~gi~v~~v~pg~v~t~~~~~~~-~~~ 203 (261)
T PRK08936 152 --------------------------WPLFVHYAASKGGVKLMTETLAMEY-APKGIRVNNIGPGAINTPINAEKF-ADP 203 (261)
T ss_pred --------------------------CCCCcccHHHHHHHHHHHHHHHHHH-hhcCeEEEEEEECcCCCCcccccc-CCH
Confidence 3567899999999999999999999 567999999999999998643221 100
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..............+.+|+|+++.+.++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~va~~~~~l 231 (261)
T PRK08936 204 KQRADVESMIPMGYIGKPEEIAAVAAWL 231 (261)
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 0000000111224577899999887764
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=247.47 Aligned_cols=225 Identities=17% Similarity=0.191 Sum_probs=175.1
Q ss_pred EEEEEcCCCchHHHHHHHHHH----cCCcEEEEEecChhHHHHHHHHhcc--CCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 88 SVIITGASSGLGLATAKALAE----TGKWHIIMACRDFLKAERAAKSAGM--AKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~----~Ga~~Vi~~~r~~~~~~~~~~~l~~--~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
++|||||++|||+++|++|++ .|+ +|++++|+.+.+++..++++. .+.++.++.||++|.++++++++++.+.
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~~~~~ 80 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGS-VLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQLLKALREL 80 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCc-EEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHHHHHHHHhc
Confidence 689999999999999999997 794 999999998888888777754 3457889999999999999999999887
Q ss_pred CCCC----cEEEEccccCCCC-CCCCCC-CHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCC
Q 018819 162 GRPL----DVLVCNAAVYLPT-AKEPTF-TAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLA 235 (350)
Q Consensus 162 ~g~i----d~lv~~Ag~~~~~-~~~~~~-~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~ 235 (350)
++.+ |+||||||..... ....+. +.++|++++++|+.+++.+++.++|.|.++....|+||++||..+..+
T Consensus 81 ~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~~~--- 157 (256)
T TIGR01500 81 PRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQP--- 157 (256)
T ss_pred cccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhCCC---
Confidence 6643 6999999975432 223333 578999999999999999999999999865312369999999987642
Q ss_pred CCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccc
Q 018819 236 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 315 (350)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~ 315 (350)
.++...|++||++++.+++.++.|+ .++||+||+|+||+|+|++...
T Consensus 158 --------------------------------~~~~~~Y~asKaal~~l~~~la~e~-~~~~i~v~~v~PG~v~T~~~~~ 204 (256)
T TIGR01500 158 --------------------------------FKGWALYCAGKAARDMLFQVLALEE-KNPNVRVLNYAPGVLDTDMQQQ 204 (256)
T ss_pred --------------------------------CCCchHHHHHHHHHHHHHHHHHHHh-cCCCeEEEEecCCcccchHHHH
Confidence 3577899999999999999999999 6779999999999999986532
Q ss_pred cchhh-HHhhhhhhH-HhhhcCccchhhhhhhcccc
Q 018819 316 EHIPL-FRLLFPPFQ-KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 316 ~~~~~-~~~~~~~~~-~~~~~~~~s~~~~a~~i~~~ 349 (350)
..... .......+. .....++.+|+|+|+.++++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~p~eva~~~~~l 240 (256)
T TIGR01500 205 VREESVDPDMRKGLQELKAKGKLVDPKVSAQKLLSL 240 (256)
T ss_pred HHHhcCChhHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 10000 000001111 12235578999999988764
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=246.83 Aligned_cols=191 Identities=20% Similarity=0.228 Sum_probs=169.5
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|+++||||++|||+++|++|+++|+ +|++++|+.+..++..+++...+.++.++.+|++|+++++.+++++.+.+
T Consensus 2 ~l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK07890 2 LLKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERF 80 (258)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence 46789999999999999999999999995 99999999887777777776556778999999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|++|||||......++.+.+.++|++++++|+.+++.+++++.+.|.+.. ++||++||..+..+
T Consensus 81 g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~---~~ii~~sS~~~~~~---------- 147 (258)
T PRK07890 81 GRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESG---GSIVMINSMVLRHS---------- 147 (258)
T ss_pred CCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC---CEEEEEechhhccC----------
Confidence 99999999999865445677889999999999999999999999999987653 69999999877532
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.+++..|+++|++++.++++++.++ .++||++++|+||++.|++.
T Consensus 148 -------------------------~~~~~~Y~~sK~a~~~l~~~~a~~~-~~~~i~v~~v~pg~v~~~~~ 192 (258)
T PRK07890 148 -------------------------QPKYGAYKMAKGALLAASQSLATEL-GPQGIRVNSVAPGYIWGDPL 192 (258)
T ss_pred -------------------------CCCcchhHHHHHHHHHHHHHHHHHH-hhcCcEEEEEeCCccCcHHH
Confidence 3567899999999999999999998 56799999999999999864
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=245.96 Aligned_cols=227 Identities=22% Similarity=0.257 Sum_probs=186.8
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
+..+++|+++||||++|||++++++|+++|+ +|++++|+.+.+++..++++..+.++.++.||++|++++.++++++.+
T Consensus 6 ~~~~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (256)
T PRK06124 6 RFSLAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDA 84 (256)
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999999999995 999999998777777777766667789999999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
.++++|++|||+|.... .++.+.+.++|++.+++|+.+++++++.+++.|.+++ .++||++||..+..+
T Consensus 85 ~~~~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~~ss~~~~~~-------- 153 (256)
T PRK06124 85 EHGRLDILVNNVGARDR-RPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQG--YGRIIAITSIAGQVA-------- 153 (256)
T ss_pred hcCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEEeechhccC--------
Confidence 99999999999998654 6777889999999999999999999999999997665 479999999887653
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~ 320 (350)
.++...|+++|+++..+++.++.|+ .+.||++++|+||+++|++......+
T Consensus 154 ---------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~~i~v~~i~pg~v~t~~~~~~~~~- 204 (256)
T PRK06124 154 ---------------------------RAGDAVYPAAKQGLTGLMRALAAEF-GPHGITSNAIAPGYFATETNAAMAAD- 204 (256)
T ss_pred ---------------------------CCCccHhHHHHHHHHHHHHHHHHHH-HHhCcEEEEEEECCccCcchhhhccC-
Confidence 2567899999999999999999998 56799999999999999864221111
Q ss_pred HHhhhhhhH-HhhhcCccchhhhhhhcccc
Q 018819 321 FRLLFPPFQ-KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 ~~~~~~~~~-~~~~~~~~s~~~~a~~i~~~ 349 (350)
... .+.+. .....++.+|+|+++.++++
T Consensus 205 ~~~-~~~~~~~~~~~~~~~~~~~a~~~~~l 233 (256)
T PRK06124 205 PAV-GPWLAQRTPLGRWGRPEEIAGAAVFL 233 (256)
T ss_pred hHH-HHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 000 01111 11234567899998887654
|
|
| >KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=249.06 Aligned_cols=233 Identities=37% Similarity=0.581 Sum_probs=183.2
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhcc--CCCceEEEEccCCCHHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM--AKENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~--~~~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
.++.+++++|||+++|||+++|+.|+.+|+ +|++.+|+.+..+++.+++.. ...++.+++||++|.++|.++.+++.
T Consensus 31 ~~~~~~~~vVTGansGIG~eta~~La~~Ga-~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~ 109 (314)
T KOG1208|consen 31 IDLSGKVALVTGATSGIGFETARELALRGA-HVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFK 109 (314)
T ss_pred ccCCCcEEEEECCCCchHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHH
Confidence 456889999999999999999999999995 999999999888888888864 34578889999999999999999999
Q ss_pred HcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCC
Q 018819 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (350)
+.++++|++|||||++.... ..+.|.++..|.+|+.|+|+|++.++|.|+++. .+|||++||..+ ..
T Consensus 110 ~~~~~ldvLInNAGV~~~~~---~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~--~~RIV~vsS~~~-~~------- 176 (314)
T KOG1208|consen 110 KKEGPLDVLINNAGVMAPPF---SLTKDGLELTFATNYLGHFLLTELLLPLLKRSA--PSRIVNVSSILG-GG------- 176 (314)
T ss_pred hcCCCccEEEeCcccccCCc---ccCccchhheehhhhHHHHHHHHHHHHHHhhCC--CCCEEEEcCccc-cC-------
Confidence 99999999999999986533 567889999999999999999999999999875 279999999887 11
Q ss_pred CCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchh
Q 018819 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (350)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~ 319 (350)
..+..++ +... ...+....+|+.||.++..+++.|++++ .. ||.+++++||.|.|+.+.+ ..+
T Consensus 177 -~~~~~~l----------~~~~---~~~~~~~~~Y~~SKla~~l~~~eL~k~l-~~-~V~~~~~hPG~v~t~~l~r-~~~ 239 (314)
T KOG1208|consen 177 -KIDLKDL----------SGEK---AKLYSSDAAYALSKLANVLLANELAKRL-KK-GVTTYSVHPGVVKTTGLSR-VNL 239 (314)
T ss_pred -ccchhhc----------cchh---ccCccchhHHHHhHHHHHHHHHHHHHHh-hc-CceEEEECCCcccccceec-chH
Confidence 0011111 1100 0113445579999999999999999999 34 9999999999999986665 333
Q ss_pred hHHhhhhhhHHhhhcCccchhhhhhhccc
Q 018819 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
+.+.....+...+ .-++++.|+.+++
T Consensus 240 ~~~~l~~~l~~~~---~ks~~~ga~t~~~ 265 (314)
T KOG1208|consen 240 LLRLLAKKLSWPL---TKSPEQGAATTCY 265 (314)
T ss_pred HHHHHHHHHHHHh---ccCHHHHhhheeh
Confidence 3332222222211 2478888877664
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=274.58 Aligned_cols=228 Identities=20% Similarity=0.229 Sum_probs=188.2
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
..+.++++|||||++|||+++|++|+++|+ +|++++|+.+..+++.+++...+.++.++.||++|+++++++++++.+.
T Consensus 311 ~~~~~~~~lv~G~s~giG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 389 (582)
T PRK05855 311 GPFSGKLVVVTGAGSGIGRETALAFAREGA-EVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAE 389 (582)
T ss_pred ccCCCCEEEEECCcCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 356788999999999999999999999995 8999999988888887777766778999999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
+|++|++|||||+... ..+.+.+.++|++++++|+.|+++++++++|.|.+++. +|+||++||+++..+
T Consensus 390 ~g~id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~-~g~iv~~sS~~~~~~--------- 458 (582)
T PRK05855 390 HGVPDIVVNNAGIGMA-GGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGT-GGHIVNVASAAAYAP--------- 458 (582)
T ss_pred cCCCcEEEECCccCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CcEEEEECChhhccC---------
Confidence 9999999999999654 66778899999999999999999999999999987642 379999999988753
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.++...|++||++++.+++.++.|+ .+.||+|++|+||+|+|+++.....+-.
T Consensus 459 --------------------------~~~~~~Y~~sKaa~~~~~~~l~~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~ 511 (582)
T PRK05855 459 --------------------------SRSLPAYATSKAAVLMLSECLRAEL-AAAGIGVTAICPGFVDTNIVATTRFAGA 511 (582)
T ss_pred --------------------------CCCCcHHHHHHHHHHHHHHHHHHHh-cccCcEEEEEEeCCCcccchhccccCCc
Confidence 3567899999999999999999999 6679999999999999987643221100
Q ss_pred H-----hhhhhhHHhhhcCccchhhhhhhccc
Q 018819 322 R-----LLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 322 ~-----~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
. ...............+||++|+.+++
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~p~~va~~~~~ 543 (582)
T PRK05855 512 DAEDEARRRGRADKLYQRRGYGPEKVAKAIVD 543 (582)
T ss_pred ccchhhhHHhhhhhhccccCCCHHHHHHHHHH
Confidence 0 00001111222334689999998865
|
|
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=255.49 Aligned_cols=226 Identities=14% Similarity=0.079 Sum_probs=161.3
Q ss_pred cccCCCEEEEEcCC--CchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHH----------hccCCC-----ceEEEEcc
Q 018819 82 KTLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKS----------AGMAKE-----NYTIMHLD 144 (350)
Q Consensus 82 ~~l~~~~~lItGgs--~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~----------l~~~~~-----~v~~~~~D 144 (350)
..+++|++||||++ +|||+++|+.|+++|+ +|++.++.. .+....+. ....+. ++..+.+|
T Consensus 4 ~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga-~Vvv~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d 81 (299)
T PRK06300 4 IDLTGKIAFIAGIGDDQGYGWGIAKALAEAGA-TILVGTWVP-IYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDAS 81 (299)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCC-EEEEEeccc-hhhhhhhhcccccccccccccccchhhhhhHHHhhhh
Confidence 35789999999996 9999999999999997 888766431 11100000 000111 11112233
Q ss_pred CCCH------------------HHHHHHHHHHHHcCCCCcEEEEccccCCC-CCCCCCCCHHHHHHHHhhhhHHHHHHHH
Q 018819 145 LASL------------------DSVRQFVDTFRRSGRPLDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSR 205 (350)
Q Consensus 145 vs~~------------------~~v~~~~~~~~~~~g~id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~~n~~g~~~l~~ 205 (350)
+++. ++++++++++.+++|++|+||||||.... ..++.+++.++|++++++|+.|++++++
T Consensus 82 ~~~~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~ 161 (299)
T PRK06300 82 FDTPEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLLS 161 (299)
T ss_pred cCCCEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHHH
Confidence 3333 46899999999999999999999997532 3678899999999999999999999999
Q ss_pred HHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCch-hchhhhHHHHHHH
Q 018819 206 LLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGA-KAYKDSKVCNMLT 284 (350)
Q Consensus 206 ~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~asKaa~~~~ 284 (350)
+++|+|.+ +|+||++||+.+..+ .++. ..|++||+|+.+|
T Consensus 162 a~~p~m~~----~G~ii~iss~~~~~~-----------------------------------~p~~~~~Y~asKaAl~~l 202 (299)
T PRK06300 162 HFGPIMNP----GGSTISLTYLASMRA-----------------------------------VPGYGGGMSSAKAALESD 202 (299)
T ss_pred HHHHHhhc----CCeEEEEeehhhcCc-----------------------------------CCCccHHHHHHHHHHHHH
Confidence 99999975 369999999887643 2344 3799999999999
Q ss_pred HHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 285 MQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 285 ~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
+++++.|+..++||+||+|+||+++|++...-..+ ..............+..+|+|+++.++++
T Consensus 203 t~~la~el~~~~gIrVn~V~PG~v~T~~~~~~~~~-~~~~~~~~~~~p~~r~~~peevA~~v~~L 266 (299)
T PRK06300 203 TKVLAWEAGRRWGIRVNTISAGPLASRAGKAIGFI-ERMVDYYQDWAPLPEPMEAEQVGAAAAFL 266 (299)
T ss_pred HHHHHHHhCCCCCeEEEEEEeCCccChhhhccccc-HHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 99999999433599999999999999864211000 00000000111124567899999887764
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=246.17 Aligned_cols=223 Identities=21% Similarity=0.204 Sum_probs=177.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccC-CCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~-~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
.+++|++|||||++|||+++++.|+++|+ +|++++|+.++.++..+++... +.++.++.+|++|+++++++++.
T Consensus 4 ~~~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~---- 78 (259)
T PRK06125 4 HLAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAE---- 78 (259)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHH----
Confidence 46889999999999999999999999996 9999999988777776666532 55788999999999999888764
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|++|||||.... .++.+.+.++|+.++++|+.++++++++++|.|.+++ .|+||++||..+..+
T Consensus 79 ~g~id~lv~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~iss~~~~~~--------- 146 (259)
T PRK06125 79 AGDIDILVNNAGAIPG-GGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARG--SGVIVNVIGAAGENP--------- 146 (259)
T ss_pred hCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CcEEEEecCccccCC---------
Confidence 4789999999998643 6788899999999999999999999999999998764 479999999877532
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.+++..|+++|+++..++++++.|+ .+.||+||+|+||+++|+++........
T Consensus 147 --------------------------~~~~~~y~ask~al~~~~~~la~e~-~~~gi~v~~i~PG~v~t~~~~~~~~~~~ 199 (259)
T PRK06125 147 --------------------------DADYICGSAGNAALMAFTRALGGKS-LDDGVRVVGVNPGPVATDRMLTLLKGRA 199 (259)
T ss_pred --------------------------CCCchHhHHHHHHHHHHHHHHHHHh-CccCeEEEEEecCccccHHHHHHHHhhh
Confidence 2456789999999999999999998 6779999999999999986421100000
Q ss_pred --Hhhhh----hh-HHhhhcCccchhhhhhhcccc
Q 018819 322 --RLLFP----PF-QKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 --~~~~~----~~-~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.+..+ .+ ......++.+|+|+|+.++++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l 234 (259)
T PRK06125 200 RAELGDESRWQELLAGLPLGRPATPEEVADLVAFL 234 (259)
T ss_pred hcccCCHHHHHHHhccCCcCCCcCHHHHHHHHHHH
Confidence 00000 11 111224567899999988764
|
|
| >KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=237.24 Aligned_cols=185 Identities=19% Similarity=0.249 Sum_probs=157.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhc--cCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG--MAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~--~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
+++||.+++|||.||||+++++.|+++|+.++++..|.+ ..+ ...+++ .+...+.+++|||++..++++.++++..
T Consensus 2 ~~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~E-n~~-a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~ 79 (261)
T KOG4169|consen 2 DLTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEE-NPE-AIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILA 79 (261)
T ss_pred cccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhh-CHH-HHHHHhccCCCceEEEEEeccccHHHHHHHHHHHHH
Confidence 578999999999999999999999999985666555543 322 223333 3456799999999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCC-CCCCeEEEEeccCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSD-YPSKRLIIVGSITGNTNTLAGNVP 239 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~g~iV~vSS~~~~~~~~~~~~~ 239 (350)
.+|.||++||+||+.. ..+|++++++|+.|..+-+...+|+|.++. .++|-|||+||+.|..
T Consensus 80 ~fg~iDIlINgAGi~~---------dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL~-------- 142 (261)
T KOG4169|consen 80 TFGTIDILINGAGILD---------DKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGLD-------- 142 (261)
T ss_pred HhCceEEEEccccccc---------chhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccccccC--------
Confidence 9999999999999963 456999999999999999999999997764 3468999999999984
Q ss_pred CCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhc-CCCCcEEEEeeCCcccCCcc
Q 018819 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFH-EETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~-~~~gi~v~~v~PG~v~t~~~ 313 (350)
|.+-.+.|++||+++.+|+|+++.... .+.||++++||||+++|.+.
T Consensus 143 ---------------------------P~p~~pVY~AsKaGVvgFTRSla~~ayy~~sGV~~~avCPG~t~t~l~ 190 (261)
T KOG4169|consen 143 ---------------------------PMPVFPVYAASKAGVVGFTRSLADLAYYQRSGVRFNAVCPGFTRTDLA 190 (261)
T ss_pred ---------------------------ccccchhhhhcccceeeeehhhhhhhhHhhcCEEEEEECCCcchHHHH
Confidence 457888999999999999999988743 66799999999999999764
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=244.85 Aligned_cols=226 Identities=19% Similarity=0.182 Sum_probs=181.5
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+.+.+|++|||||++|||+++|+.|+++|+ +|++++|+.+..++..+.+. .++.++.+|++|+++++++++++.+.
T Consensus 2 ~~l~~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (257)
T PRK07067 2 MRLQGKVALLTGAASGIGEAVAERYLAEGA-RVVIADIKPARARLAALEIG---PAAIAVSLDVTRQDSIDRIVAAAVER 77 (257)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHhC---CceEEEEccCCCHHHHHHHHHHHHHH
Confidence 457789999999999999999999999995 99999999877777666553 35888999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|++|||||.... .++.+.+.++|+.++++|+.+++++++++.+.|.+++. +|+||++||..+..+
T Consensus 78 ~~~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~~iv~~sS~~~~~~--------- 146 (257)
T PRK07067 78 FGGIDILFNNAALFDM-APILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGR-GGKIINMASQAGRRG--------- 146 (257)
T ss_pred cCCCCEEEECCCcCCC-CCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCC-CcEEEEeCCHHhCCC---------
Confidence 9999999999998644 56778899999999999999999999999999876532 369999999877643
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.++...|++||++++.+++.++.++ .++||++++|+||+|+|+++.....-..
T Consensus 147 --------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~i~pg~v~t~~~~~~~~~~~ 199 (257)
T PRK07067 147 --------------------------EALVSHYCATKAAVISYTQSAALAL-IRHGINVNAIAPGVVDTPMWDQVDALFA 199 (257)
T ss_pred --------------------------CCCCchhhhhHHHHHHHHHHHHHHh-cccCeEEEEEeeCcccchhhhhhhhhhh
Confidence 2567899999999999999999999 5779999999999999986422110000
Q ss_pred H---hhhhhhH-----HhhhcCccchhhhhhhcccc
Q 018819 322 R---LLFPPFQ-----KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~---~~~~~~~-----~~~~~~~~s~~~~a~~i~~~ 349 (350)
+ ....... .....++.+|+|+|+.++++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l 235 (257)
T PRK07067 200 RYENRPPGEKKRLVGEAVPLGRMGVPDDLTGMALFL 235 (257)
T ss_pred hccCCCHHHHHHHHhhcCCCCCccCHHHHHHHHHHH
Confidence 0 0000000 11235567899999887654
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=246.08 Aligned_cols=225 Identities=21% Similarity=0.252 Sum_probs=179.4
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
++.+++|++|||||++|||.+++++|+++|+ +|++++|+.+..++..+++...+.++.++.+|++|+++++++++++.+
T Consensus 4 ~~~~~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~ 82 (264)
T PRK07576 4 MFDFAGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIAD 82 (264)
T ss_pred cccCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999999999995 899999998777766666655556778899999999999999999998
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
.++++|++|||||.... ..+.+.+.++|++.+++|+.|+++++++++|.|.++ +|+||++||..+..+
T Consensus 83 ~~~~iD~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~---~g~iv~iss~~~~~~-------- 150 (264)
T PRK07576 83 EFGPIDVLVSGAAGNFP-APAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRP---GASIIQISAPQAFVP-------- 150 (264)
T ss_pred HcCCCCEEEECCCCCCC-CccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC---CCEEEEECChhhccC--------
Confidence 89999999999997543 567788999999999999999999999999998754 379999999877642
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCccc-CCcccccchh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA-TTGLFREHIP 319 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~-t~~~~~~~~~ 319 (350)
.+++..|+++|++++.++++++.++ ..+||++++|+||+++ |++... ..+
T Consensus 151 ---------------------------~~~~~~Y~asK~a~~~l~~~la~e~-~~~gi~v~~v~pg~~~~t~~~~~-~~~ 201 (264)
T PRK07576 151 ---------------------------MPMQAHVCAAKAGVDMLTRTLALEW-GPEGIRVNSIVPGPIAGTEGMAR-LAP 201 (264)
T ss_pred ---------------------------CCCccHHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecccccCcHHHhh-ccc
Confidence 3577899999999999999999998 5679999999999997 443211 111
Q ss_pred hHHhhhhhhHH-hhhcCccchhhhhhhccc
Q 018819 320 LFRLLFPPFQK-YITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 320 ~~~~~~~~~~~-~~~~~~~s~~~~a~~i~~ 348 (350)
-... ...+.. ....+..+|+++++.+++
T Consensus 202 ~~~~-~~~~~~~~~~~~~~~~~dva~~~~~ 230 (264)
T PRK07576 202 SPEL-QAAVAQSVPLKRNGTKQDIANAALF 230 (264)
T ss_pred CHHH-HHHHHhcCCCCCCCCHHHHHHHHHH
Confidence 0000 000101 112345678888877654
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-32 Score=243.52 Aligned_cols=220 Identities=20% Similarity=0.233 Sum_probs=176.2
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
..+++|+++||||++|||+++|++|+++|+ +|++++|+..+.++..+.+ +.++.++++|++|.++++++++++.++
T Consensus 6 ~~~~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (255)
T PRK05717 6 PGHNGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLDRERGSKVAKAL---GENAWFIAMDVADEAQVAAGVAEVLGQ 81 (255)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHc---CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999995 8999988876665554443 346889999999999999999999999
Q ss_pred CCCCcEEEEccccCCC-CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
++++|++|||||.... ..++.+.+.++|++.+++|+.+++++++++.|.|.+.. |+||++||..+..+
T Consensus 82 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~---g~ii~~sS~~~~~~-------- 150 (255)
T PRK05717 82 FGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHN---GAIVNLASTRARQS-------- 150 (255)
T ss_pred hCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC---cEEEEEcchhhcCC--------
Confidence 9999999999998643 24667789999999999999999999999999987643 69999999987643
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccc-hh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH-IP 319 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~-~~ 319 (350)
.+++..|+++|++++.++++++.++ .. +|+|++|+||+++|++..... .+
T Consensus 151 ---------------------------~~~~~~Y~~sKaa~~~~~~~la~~~-~~-~i~v~~i~Pg~i~t~~~~~~~~~~ 201 (255)
T PRK05717 151 ---------------------------EPDTEAYAASKGGLLALTHALAISL-GP-EIRVNAVSPGWIDARDPSQRRAEP 201 (255)
T ss_pred ---------------------------CCCCcchHHHHHHHHHHHHHHHHHh-cC-CCEEEEEecccCcCCccccccchH
Confidence 2456789999999999999999998 34 599999999999998642211 11
Q ss_pred hHHhhhhhhHHhhhcCccchhhhhhhccc
Q 018819 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
+.. .........+..+|+++++.+.+
T Consensus 202 ~~~---~~~~~~~~~~~~~~~~va~~~~~ 227 (255)
T PRK05717 202 LSE---ADHAQHPAGRVGTVEDVAAMVAW 227 (255)
T ss_pred HHH---HHhhcCCCCCCcCHHHHHHHHHH
Confidence 100 00011223456788888887754
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=255.51 Aligned_cols=191 Identities=18% Similarity=0.200 Sum_probs=157.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccC--CCceEEEEccCCC--HHHHHHHHHHHHH
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLAS--LDSVRQFVDTFRR 160 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~--~~~v~~~~~Dvs~--~~~v~~~~~~~~~ 160 (350)
.|++++||||++|||+++|++|+++|+ +|++++|+.+++++..+++... +.++..+.+|+++ .+.++++.+.+.
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~- 129 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIE- 129 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhc-
Confidence 588999999999999999999999996 8999999998888887777543 3468888999995 333444443331
Q ss_pred cCCCCcEEEEccccCCC-CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (350)
..++|++|||||+... ...+.+.+.+++++++++|+.|++++++.++|.|.+++ .|+||++||.++....
T Consensus 130 -~~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~--~g~IV~iSS~a~~~~~------ 200 (320)
T PLN02780 130 -GLDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRK--KGAIINIGSGAAIVIP------ 200 (320)
T ss_pred -CCCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC--CcEEEEEechhhccCC------
Confidence 1257799999998643 24577889999999999999999999999999998765 5799999999875310
Q ss_pred CCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccc
Q 018819 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (350)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~ 314 (350)
+.++...|++||++++.++++++.|+ .++||+|++|+||+|+|++..
T Consensus 201 ---------------------------~~p~~~~Y~aSKaal~~~~~~L~~El-~~~gI~V~~v~PG~v~T~~~~ 247 (320)
T PLN02780 201 ---------------------------SDPLYAVYAATKAYIDQFSRCLYVEY-KKSGIDVQCQVPLYVATKMAS 247 (320)
T ss_pred ---------------------------CCccchHHHHHHHHHHHHHHHHHHHH-hccCeEEEEEeeCceecCccc
Confidence 12567899999999999999999999 677999999999999998653
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=248.57 Aligned_cols=220 Identities=23% Similarity=0.234 Sum_probs=177.6
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhH-------HHHHHHHhccCCCceEEEEccCCCHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK-------AERAAKSAGMAKENYTIMHLDLASLDSVRQF 154 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~-------~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~ 154 (350)
+.+++|++|||||++|||+++|++|+++|+ +|++++|+.+. +++..+++...+.++.++.||+++++++.++
T Consensus 2 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~ 80 (273)
T PRK08278 2 MSLSGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAA 80 (273)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHH
Confidence 456889999999999999999999999995 89999987532 3444555555567889999999999999999
Q ss_pred HHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCC
Q 018819 155 VDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTL 234 (350)
Q Consensus 155 ~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~ 234 (350)
++++.+.++++|++|||||.... .++.+.+.++|++++++|+.+++++++++.|.|.+++ +|+||++||..+..+.
T Consensus 81 ~~~~~~~~g~id~li~~ag~~~~-~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~--~g~iv~iss~~~~~~~- 156 (273)
T PRK08278 81 VAKAVERFGGIDICVNNASAINL-TGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSE--NPHILTLSPPLNLDPK- 156 (273)
T ss_pred HHHHHHHhCCCCEEEECCCCcCC-CCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcC--CCEEEEECCchhcccc-
Confidence 99999989999999999998644 5677889999999999999999999999999998765 4799999987654311
Q ss_pred CCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCC-cccCCcc
Q 018819 235 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPG-CIATTGL 313 (350)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG-~v~t~~~ 313 (350)
.+++...|++||++++.++++++.|+ .++||+||+|+|| +++|++.
T Consensus 157 --------------------------------~~~~~~~Y~~sK~a~~~~~~~la~el-~~~~I~v~~i~Pg~~i~t~~~ 203 (273)
T PRK08278 157 --------------------------------WFAPHTAYTMAKYGMSLCTLGLAEEF-RDDGIAVNALWPRTTIATAAV 203 (273)
T ss_pred --------------------------------ccCCcchhHHHHHHHHHHHHHHHHHh-hhcCcEEEEEeCCCccccHHH
Confidence 12567899999999999999999999 6779999999999 6888643
Q ss_pred cccchhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 314 FREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.. ..+ . . .......+|+++|+.++++
T Consensus 204 ~~-~~~-~---~-----~~~~~~~~p~~va~~~~~l 229 (273)
T PRK08278 204 RN-LLG-G---D-----EAMRRSRTPEIMADAAYEI 229 (273)
T ss_pred Hh-ccc-c---c-----ccccccCCHHHHHHHHHHH
Confidence 21 100 0 0 0113457888888887653
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-32 Score=243.29 Aligned_cols=188 Identities=23% Similarity=0.295 Sum_probs=164.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
++++|||||++|||++++++|+++|+ +|++++|+.+.+++..+++...+ ++.++.||++|++++.++++++.++++++
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~i~~~~~~~~~~~g~i 79 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARRTDALQAFAARLPKAA-RVSVYAADVRDADALAAAAADFIAAHGLP 79 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcccCC-eeEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 36899999999999999999999995 99999999888777777665444 78999999999999999999999999999
Q ss_pred cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcc
Q 018819 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (350)
|++|||||.........+.+.++|+.++++|+.|++++++.++|.|.+++ .|+||++||.++..+
T Consensus 80 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~--~~~iv~isS~~~~~~------------- 144 (257)
T PRK07024 80 DVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAAR--RGTLVGIASVAGVRG------------- 144 (257)
T ss_pred CEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcC--CCEEEEEechhhcCC-------------
Confidence 99999999864322333378899999999999999999999999997765 479999999988753
Q ss_pred ccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.++...|++||++++.++++++.|+ +++||++++|+||+|+|++.
T Consensus 145 ----------------------~~~~~~Y~asK~a~~~~~~~l~~e~-~~~gi~v~~v~Pg~v~t~~~ 189 (257)
T PRK07024 145 ----------------------LPGAGAYSASKAAAIKYLESLRVEL-RPAGVRVVTIAPGYIRTPMT 189 (257)
T ss_pred ----------------------CCCCcchHHHHHHHHHHHHHHHHHh-hccCcEEEEEecCCCcCchh
Confidence 3566789999999999999999998 56799999999999999864
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-32 Score=243.62 Aligned_cols=221 Identities=23% Similarity=0.195 Sum_probs=178.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEe-cChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~-r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+|++|||||++|||++++++|+++|+ +|+++. |+.+..+...+++...+.++.++.||++|+++++++++++.+.+++
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 80 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGF-DIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGR 80 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 57999999999999999999999996 777765 5666666777777666778999999999999999999999999999
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
+|++|||||.... ..+.+.+.++|++++++|+.+++++++++.++|.+++. +|+||++||..+..+
T Consensus 81 id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~-~g~ii~isS~~~~~~------------ 146 (256)
T PRK12743 81 IDVLVNNAGAMTK-APFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQ-GGRIINITSVHEHTP------------ 146 (256)
T ss_pred CCEEEECCCCCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CeEEEEEeeccccCC------------
Confidence 9999999998654 56677899999999999999999999999999876432 479999999876642
Q ss_pred cccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhh
Q 018819 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLL 324 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~ 324 (350)
.++...|+++|++++.++++++.++ .++||++++|+||+++|++........ .
T Consensus 147 -----------------------~~~~~~Y~~sK~a~~~l~~~la~~~-~~~~i~v~~v~Pg~~~t~~~~~~~~~~-~-- 199 (256)
T PRK12743 147 -----------------------LPGASAYTAAKHALGGLTKAMALEL-VEHGILVNAVAPGAIATPMNGMDDSDV-K-- 199 (256)
T ss_pred -----------------------CCCcchhHHHHHHHHHHHHHHHHHh-hhhCeEEEEEEeCCccCccccccChHH-H--
Confidence 3567899999999999999999999 567999999999999998653211100 0
Q ss_pred hhhhHHhhhcCccchhhhhhhccc
Q 018819 325 FPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 325 ~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
..........+..+|+|+++.+.+
T Consensus 200 ~~~~~~~~~~~~~~~~dva~~~~~ 223 (256)
T PRK12743 200 PDSRPGIPLGRPGDTHEIASLVAW 223 (256)
T ss_pred HHHHhcCCCCCCCCHHHHHHHHHH
Confidence 001111122345688998887654
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-32 Score=244.76 Aligned_cols=226 Identities=19% Similarity=0.247 Sum_probs=178.4
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|++|||||++|||++++++|+++|+ +|++++|+.. ..+..+++...+.++.++.||++++++++++++++.+.+
T Consensus 3 ~~~~~~~lItG~s~giG~~la~~l~~~G~-~Vv~~~r~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 80 (263)
T PRK08226 3 KLTGKTALITGALQGIGEGIARVFARHGA-NLILLDISPE-IEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKE 80 (263)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHH-HHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 46789999999999999999999999995 8999999864 334444444445678899999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|++|||||.... .++.+.+.++|++.+++|+.+++++++.+++.+.+.+ .++||++||..+...
T Consensus 81 ~~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~isS~~~~~~---------- 147 (263)
T PRK08226 81 GRIDILVNNAGVCRL-GSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARK--DGRIVMMSSVTGDMV---------- 147 (263)
T ss_pred CCCCEEEECCCcCCC-CCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC--CcEEEEECcHHhccc----------
Confidence 999999999998643 6677888999999999999999999999999887654 469999999876421
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccc---hh
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH---IP 319 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~---~~ 319 (350)
+.+++..|+++|++++.++++++.++ .+.||+|++|+||+++|++..... .+
T Consensus 148 ------------------------~~~~~~~Y~~sK~a~~~~~~~la~~~-~~~~i~v~~i~pg~v~t~~~~~~~~~~~~ 202 (263)
T PRK08226 148 ------------------------ADPGETAYALTKAAIVGLTKSLAVEY-AQSGIRVNAICPGYVRTPMAESIARQSNP 202 (263)
T ss_pred ------------------------CCCCcchHHHHHHHHHHHHHHHHHHh-cccCcEEEEEecCcccCHHHHhhhhhccC
Confidence 12466789999999999999999998 567999999999999998653210 00
Q ss_pred --hHHhhhhhhH-HhhhcCccchhhhhhhcccc
Q 018819 320 --LFRLLFPPFQ-KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 320 --~~~~~~~~~~-~~~~~~~~s~~~~a~~i~~~ 349 (350)
.... ...+. .....++.+|+|+|+.+.+|
T Consensus 203 ~~~~~~-~~~~~~~~p~~~~~~~~~va~~~~~l 234 (263)
T PRK08226 203 EDPESV-LTEMAKAIPLRRLADPLEVGELAAFL 234 (263)
T ss_pred CCcHHH-HHHHhccCCCCCCCCHHHHHHHHHHH
Confidence 0000 00111 11123467999999987654
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-32 Score=243.09 Aligned_cols=224 Identities=17% Similarity=0.186 Sum_probs=180.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEE-EecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIM-ACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~-~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
++++++|||||++|||++++++|+++|+ +|++ ..|+.+..++..++++..+.++.++.||++|++++.++++++.+.+
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGY-DIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEF 80 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4678999999999999999999999996 6554 6788777777777776667788999999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|+||||||.... .++.+.+.++|+..+++|+.+++++++++.+.|.+++ .|+||++||..+..+
T Consensus 81 ~~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~~sS~~~~~~---------- 147 (250)
T PRK08063 81 GRLDVFVNNAASGVL-RPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVG--GGKIISLSSLGSIRY---------- 147 (250)
T ss_pred CCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CeEEEEEcchhhccC----------
Confidence 999999999998543 6677889999999999999999999999999998765 479999999866532
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.++...|+++|++++.++++++.++ .+.||++++|+||+++|++... ......
T Consensus 148 -------------------------~~~~~~y~~sK~a~~~~~~~~~~~~-~~~~i~v~~i~pg~v~t~~~~~-~~~~~~ 200 (250)
T PRK08063 148 -------------------------LENYTTVGVSKAALEALTRYLAVEL-APKGIAVNAVSGGAVDTDALKH-FPNREE 200 (250)
T ss_pred -------------------------CCCccHHHHHHHHHHHHHHHHHHHH-hHhCeEEEeEecCcccCchhhh-ccCchH
Confidence 3466789999999999999999998 5679999999999999986522 110000
Q ss_pred hhhhhhH-HhhhcCccchhhhhhhcccc
Q 018819 323 LLFPPFQ-KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~-~~~~~~~~s~~~~a~~i~~~ 349 (350)
. ..... ......+++++|+|+.++++
T Consensus 201 ~-~~~~~~~~~~~~~~~~~dva~~~~~~ 227 (250)
T PRK08063 201 L-LEDARAKTPAGRMVEPEDVANAVLFL 227 (250)
T ss_pred H-HHHHhcCCCCCCCcCHHHHHHHHHHH
Confidence 0 00011 11123468999999887653
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-32 Score=249.20 Aligned_cols=222 Identities=19% Similarity=0.167 Sum_probs=177.0
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC-hhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD-FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~-~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
.++++|++|||||++|||+++|++|+++|+ +|++.++. ....++..+++...+.++.++.||++|+++++++++.+.+
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~ 86 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVG 86 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999996 78888764 4456666677766677899999999999999999999988
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCC-----CCCeEEEEeccCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY-----PSKRLIIVGSITGNTNTLA 235 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~-----~~g~iV~vSS~~~~~~~~~ 235 (350)
++++|+||||||+... ..+.+.+.++|+.++++|+.|++++++++.++|.++.. ..|+||++||.++..+
T Consensus 87 -~g~iD~li~nAG~~~~-~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~--- 161 (306)
T PRK07792 87 -LGGLDIVVNNAGITRD-RMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLVG--- 161 (306)
T ss_pred -hCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCcccccC---
Confidence 9999999999998754 56778899999999999999999999999999865311 1369999999987753
Q ss_pred CCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccc
Q 018819 236 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 315 (350)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~ 315 (350)
.+++..|+++|++++.+++.++.|+ .++||+||+|+||. .|++...
T Consensus 162 --------------------------------~~~~~~Y~asKaal~~l~~~la~e~-~~~gI~vn~i~Pg~-~t~~~~~ 207 (306)
T PRK07792 162 --------------------------------PVGQANYGAAKAGITALTLSAARAL-GRYGVRANAICPRA-RTAMTAD 207 (306)
T ss_pred --------------------------------CCCCchHHHHHHHHHHHHHHHHHHh-hhcCeEEEEECCCC-CCchhhh
Confidence 2567789999999999999999998 67799999999994 7775421
Q ss_pred cchhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 316 EHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
...+. +.. ........+|+++++.+++|
T Consensus 208 ~~~~~-----~~~-~~~~~~~~~pe~va~~v~~L 235 (306)
T PRK07792 208 VFGDA-----PDV-EAGGIDPLSPEHVVPLVQFL 235 (306)
T ss_pred hcccc-----chh-hhhccCCCCHHHHHHHHHHH
Confidence 11010 000 00112235788888877653
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-32 Score=241.34 Aligned_cols=223 Identities=18% Similarity=0.226 Sum_probs=178.0
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEE-EecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIM-ACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~-~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
+++|++|||||++|||+++|++|+++|+ +|++ .+++....++..+++...+.++..+.||++|.++++++++++.+.+
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDGF-KVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEV 79 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999996 6665 4555555555666665566778889999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|++|||||.... .++.+.+.++|++++++|+.+++.+++++.+.|.+++ .|+||++||..+..+
T Consensus 80 ~~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~isS~~~~~~---------- 146 (246)
T PRK12938 80 GEIDVLVNNAGITRD-VVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERG--WGRIINISSVNGQKG---------- 146 (246)
T ss_pred CCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CeEEEEEechhccCC----------
Confidence 999999999998644 5677889999999999999999999999999997754 479999999877643
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.++...|+++|++++.++++++.++ ...||++++|+||+++|++...- .|-
T Consensus 147 -------------------------~~~~~~y~~sK~a~~~~~~~l~~~~-~~~gi~v~~i~pg~~~t~~~~~~-~~~-- 197 (246)
T PRK12938 147 -------------------------QFGQTNYSTAKAGIHGFTMSLAQEV-ATKGVTVNTVSPGYIGTDMVKAI-RPD-- 197 (246)
T ss_pred -------------------------CCCChhHHHHHHHHHHHHHHHHHHh-hhhCeEEEEEEecccCCchhhhc-ChH--
Confidence 2567799999999999999999998 57799999999999999865321 110
Q ss_pred hhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 323 LLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.............+.+++++++.+.++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~v~~~~~~l 224 (246)
T PRK12938 198 VLEKIVATIPVRRLGSPDEIGSIVAWL 224 (246)
T ss_pred HHHHHHhcCCccCCcCHHHHHHHHHHH
Confidence 000000111123467889988877654
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=245.36 Aligned_cols=194 Identities=18% Similarity=0.138 Sum_probs=169.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.++++++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++...+.++.++.+|++|.++++++++.+.+.+
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 81 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERF 81 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 45788999999999999999999999995 89999998877777777776556678899999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCC----CCeEEEEeccCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYP----SKRLIIVGSITGNTNTLAGNV 238 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~----~g~iV~vSS~~~~~~~~~~~~ 238 (350)
+++|+||||||.... .++.+.+.++|+..+++|+.|+++++++++|.|.++... .|+||++||.++..+
T Consensus 82 g~id~vi~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~------ 154 (287)
T PRK06194 82 GAVHLLFNNAGVGAG-GLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLLA------ 154 (287)
T ss_pred CCCCEEEECCCCCCC-CCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccC------
Confidence 999999999999654 667778999999999999999999999999999876421 169999999988753
Q ss_pred CCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcC-CCCcEEEEeeCCcccCCcc
Q 018819 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE-ETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~-~~gi~v~~v~PG~v~t~~~ 313 (350)
.++...|++||++++.+++.++.++.. ..+|++++++||+|.|++.
T Consensus 155 -----------------------------~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg~i~t~~~ 201 (287)
T PRK06194 155 -----------------------------PPAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPTGIW 201 (287)
T ss_pred -----------------------------CCCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeCcccCccc
Confidence 246678999999999999999999842 4579999999999999865
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-32 Score=242.70 Aligned_cols=218 Identities=17% Similarity=0.163 Sum_probs=174.4
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+++++|++|||||++|||+++++.|+++|+ +|++++|+.+. ...+.++.++++|++|+++++++++.+.+.
T Consensus 2 ~~~~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~~~--------~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 72 (252)
T PRK07856 2 LDLTGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRAPE--------TVDGRPAEFHAADVRDPDQVAALVDAIVER 72 (252)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCChhh--------hhcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 457899999999999999999999999995 89999998644 112456889999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|++|||||+... ..+.+.+.++|++.+++|+.+++++++.+.+.|.++.. .|+||++||..+..+
T Consensus 73 ~~~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~g~ii~isS~~~~~~--------- 141 (252)
T PRK07856 73 HGRLDVLVNNAGGSPY-ALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPG-GGSIVNIGSVSGRRP--------- 141 (252)
T ss_pred cCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CcEEEEEcccccCCC---------
Confidence 9999999999998643 56677899999999999999999999999999876431 479999999987643
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.++...|++||++++.+++.++.|+ .+. |++++|+||+|+|++....... .
T Consensus 142 --------------------------~~~~~~Y~~sK~a~~~l~~~la~e~-~~~-i~v~~i~Pg~v~t~~~~~~~~~-~ 192 (252)
T PRK07856 142 --------------------------SPGTAAYGAAKAGLLNLTRSLAVEW-APK-VRVNAVVVGLVRTEQSELHYGD-A 192 (252)
T ss_pred --------------------------CCCCchhHHHHHHHHHHHHHHHHHh-cCC-eEEEEEEeccccChHHhhhccC-H
Confidence 3567899999999999999999999 555 9999999999999864321100 0
Q ss_pred HhhhhhhHH-hhhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQK-YITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~~-~~~~~~~s~~~~a~~i~~~ 349 (350)
.. ...+.+ ....++.+|+|+++.++++
T Consensus 193 ~~-~~~~~~~~~~~~~~~p~~va~~~~~L 220 (252)
T PRK07856 193 EG-IAAVAATVPLGRLATPADIAWACLFL 220 (252)
T ss_pred HH-HHHHhhcCCCCCCcCHHHHHHHHHHH
Confidence 00 001111 1124567899999887654
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=245.39 Aligned_cols=225 Identities=22% Similarity=0.218 Sum_probs=180.9
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh-hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~-~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
..+++|++|||||++|||++++++|+++|+ +|++++|+. ...+...+.+...+.++.++.||++|.++++++++++.+
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~ 120 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVR 120 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 577899999999999999999999999995 888888875 334455555555566788999999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
.++++|++|||||.......+.+.+.++|++.+++|+.+++++++++.+.|.+ .++||++||..+..+
T Consensus 121 ~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~----~g~iV~isS~~~~~~-------- 188 (290)
T PRK06701 121 ELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQ----GSAIINTGSITGYEG-------- 188 (290)
T ss_pred HcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhh----CCeEEEEecccccCC--------
Confidence 89999999999998644456778899999999999999999999999998854 369999999987643
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~ 320 (350)
.++...|++||++++.++++++.++ .+.||++++|+||+|+|++......+
T Consensus 189 ---------------------------~~~~~~Y~~sK~a~~~l~~~la~~~-~~~gIrv~~i~pG~v~T~~~~~~~~~- 239 (290)
T PRK06701 189 ---------------------------NETLIDYSATKGAIHAFTRSLAQSL-VQKGIRVNAVAPGPIWTPLIPSDFDE- 239 (290)
T ss_pred ---------------------------CCCcchhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecCCCCCcccccccCH-
Confidence 2456789999999999999999998 56799999999999999865332111
Q ss_pred HHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 ~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..............+.+++|+|+.++++
T Consensus 240 -~~~~~~~~~~~~~~~~~~~dva~~~~~l 267 (290)
T PRK06701 240 -EKVSQFGSNTPMQRPGQPEELAPAYVFL 267 (290)
T ss_pred -HHHHHHHhcCCcCCCcCHHHHHHHHHHH
Confidence 0000011111224567899999887653
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=242.92 Aligned_cols=221 Identities=19% Similarity=0.193 Sum_probs=182.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
++++||||+||||++++++|+++|+ +|++++|+.+..++...++...+.++.++.||++|+++++++++.+.+.++++|
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id 79 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGW-RLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGID 79 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 4799999999999999999999995 899999998888888777766677889999999999999999999999889999
Q ss_pred EEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccc
Q 018819 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (350)
Q Consensus 167 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (350)
+||||||.... ..+.+.+.++|++++++|+.+++++++.++|.|.+.+ .++||++||..+..+
T Consensus 80 ~lI~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~vsS~~~~~~-------------- 142 (270)
T PRK05650 80 VIVNNAGVASG-GFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQK--SGRIVNIASMAGLMQ-------------- 142 (270)
T ss_pred EEEECCCCCCC-CCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCC--CCEEEEECChhhcCC--------------
Confidence 99999998654 6677889999999999999999999999999997765 479999999987643
Q ss_pred cccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhhhh
Q 018819 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFP 326 (350)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~ 326 (350)
.++...|+++|+++++++++++.|+ .+.||++++|+||+++|++........ .....
T Consensus 143 ---------------------~~~~~~Y~~sKaa~~~~~~~l~~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~-~~~~~ 199 (270)
T PRK05650 143 ---------------------GPAMSSYNVAKAGVVALSETLLVEL-ADDEIGVHVVCPSFFQTNLLDSFRGPN-PAMKA 199 (270)
T ss_pred ---------------------CCCchHHHHHHHHHHHHHHHHHHHh-cccCcEEEEEecCccccCcccccccCc-hhHHH
Confidence 3567899999999999999999998 667999999999999998653211110 00011
Q ss_pred hhHHhhhcCccchhhhhhhccc
Q 018819 327 PFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 327 ~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
..........++++++|+.+++
T Consensus 200 ~~~~~~~~~~~~~~~vA~~i~~ 221 (270)
T PRK05650 200 QVGKLLEKSPITAADIADYIYQ 221 (270)
T ss_pred HHHHHhhcCCCCHHHHHHHHHH
Confidence 1122223345799999988764
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-32 Score=245.52 Aligned_cols=241 Identities=21% Similarity=0.164 Sum_probs=170.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
+|++||||+ +|||+++|++|+ +| .+|++++|+.+..++..+++...+.++.+++||++|+++++++++++ ++++++
T Consensus 2 ~k~~lItGa-~gIG~~la~~l~-~G-~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~-~~~g~i 77 (275)
T PRK06940 2 KEVVVVIGA-GGIGQAIARRVG-AG-KKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATA-QTLGPV 77 (275)
T ss_pred CCEEEEECC-ChHHHHHHHHHh-CC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHH-HhcCCC
Confidence 479999998 699999999996 79 49999999987777777777655667889999999999999999988 567899
Q ss_pred cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcc
Q 018819 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (350)
|+||||||+.. +.++|++++++|+.|++++++.+.|.|.++ |++|++||.++..... .... ...
T Consensus 78 d~li~nAG~~~--------~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~----g~iv~isS~~~~~~~~--~~~~--~~~ 141 (275)
T PRK06940 78 TGLVHTAGVSP--------SQASPEAILKVDLYGTALVLEEFGKVIAPG----GAGVVIASQSGHRLPA--LTAE--QER 141 (275)
T ss_pred CEEEECCCcCC--------chhhHHHHHHHhhHHHHHHHHHHHHHHhhC----CCEEEEEecccccCcc--cchh--hhc
Confidence 99999999742 236799999999999999999999999653 5889999988764210 0000 000
Q ss_pred ccccccccCCCCCCCccc-CCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchh-hHHh
Q 018819 246 DLRGFAGGLNGLNSSSMI-DGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP-LFRL 323 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~-~~~~ 323 (350)
.+..+ . ...+...+.. .....+++..|++||+|+..+++.++.++ .++||+||+|+||+|+|++....... ....
T Consensus 142 ~~~~~-~-~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gIrvn~i~PG~v~T~~~~~~~~~~~~~~ 218 (275)
T PRK06940 142 ALATT-P-TEELLSLPFLQPDAIEDSLHAYQIAKRANALRVMAEAVKW-GERGARINSISPGIISTPLAQDELNGPRGDG 218 (275)
T ss_pred ccccc-c-cccccccccccccccCCccchhHHHHHHHHHHHHHHHHHH-ccCCeEEEEeccCcCcCccchhhhcCCchHH
Confidence 00000 0 0000000000 00001346789999999999999999999 67799999999999999975321110 0000
Q ss_pred hhhhhHHhhhcCccchhhhhhhcccc
Q 018819 324 LFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 324 ~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
...........++.+|||+|+.+++|
T Consensus 219 ~~~~~~~~p~~r~~~peeia~~~~fL 244 (275)
T PRK06940 219 YRNMFAKSPAGRPGTPDEIAALAEFL 244 (275)
T ss_pred HHHHhhhCCcccCCCHHHHHHHHHHH
Confidence 01111122235678999999988764
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=242.16 Aligned_cols=225 Identities=19% Similarity=0.175 Sum_probs=182.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.++++++|||||++|||++++++|+++|+ +|++++|+.+..++..+.+...+.++.++.||+++++++.++++++.+.+
T Consensus 7 ~~~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (263)
T PRK07814 7 RLDDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAF 85 (263)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 36789999999999999999999999995 99999999877777777776556678899999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|++|||||.... ..+.+.+.++|+.++++|+.+++++++++.+.|.+... .|+||++||..+..+
T Consensus 86 ~~id~vi~~Ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~g~iv~~sS~~~~~~---------- 153 (263)
T PRK07814 86 GRLDIVVNNVGGTMP-NPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSG-GGSVINISSTMGRLA---------- 153 (263)
T ss_pred CCCCEEEECCCCCCC-CChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcC-CeEEEEEccccccCC----------
Confidence 999999999998644 56678899999999999999999999999999976321 479999999887643
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.++...|++||++++.++++++.++ .+ +|++++|+||++.|+++... .+...
T Consensus 154 -------------------------~~~~~~Y~~sK~a~~~~~~~~~~e~-~~-~i~v~~i~Pg~v~t~~~~~~-~~~~~ 205 (263)
T PRK07814 154 -------------------------GRGFAAYGTAKAALAHYTRLAALDL-CP-RIRVNAIAPGSILTSALEVV-AANDE 205 (263)
T ss_pred -------------------------CCCCchhHHHHHHHHHHHHHHHHHH-CC-CceEEEEEeCCCcCchhhhc-cCCHH
Confidence 2567789999999999999999998 44 69999999999999865211 00001
Q ss_pred hhhhhhH-HhhhcCccchhhhhhhcccc
Q 018819 323 LLFPPFQ-KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~-~~~~~~~~s~~~~a~~i~~~ 349 (350)
. ...+. ........+++|+++.++++
T Consensus 206 ~-~~~~~~~~~~~~~~~~~~va~~~~~l 232 (263)
T PRK07814 206 L-RAPMEKATPLRRLGDPEDIAAAAVYL 232 (263)
T ss_pred H-HHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 1 11111 11123456899999887754
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=245.37 Aligned_cols=213 Identities=24% Similarity=0.280 Sum_probs=172.8
Q ss_pred cCC--CchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhcc-CCCceEEEEccCCCHHHHHHHHHHHHHcC-CCCcEE
Q 018819 93 GAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTFRRSG-RPLDVL 168 (350)
Q Consensus 93 Ggs--~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~-~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~-g~id~l 168 (350)
|++ +|||+++|+.|+++|+ +|++++|+.++.++..+++.. .+.+ ++.||++|+++++++++++.+.+ |+||++
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga-~V~~~~~~~~~~~~~~~~l~~~~~~~--~~~~D~~~~~~v~~~~~~~~~~~~g~iD~l 77 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGA-NVILTDRNEEKLADALEELAKEYGAE--VIQCDLSDEESVEALFDEAVERFGGRIDIL 77 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTE-EEEEEESSHHHHHHHHHHHHHHTTSE--EEESCTTSHHHHHHHHHHHHHHHCSSESEE
T ss_pred CCCCCCChHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHHHcCCc--eEeecCcchHHHHHHHHHHHhhcCCCeEEE
Confidence 566 9999999999999995 999999998876555544432 3333 59999999999999999999998 999999
Q ss_pred EEccccCCC---CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcc
Q 018819 169 VCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (350)
Q Consensus 169 v~~Ag~~~~---~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (350)
|||+|.... ..++.+.+.++|++.+++|+.+++.+++++.|+|.+. |+||++||..+...
T Consensus 78 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----gsii~iss~~~~~~------------- 140 (241)
T PF13561_consen 78 VNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKG----GSIINISSIAAQRP------------- 140 (241)
T ss_dssp EEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHE----EEEEEEEEGGGTSB-------------
T ss_pred EecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----CCcccccchhhccc-------------
Confidence 999998653 3677788999999999999999999999999988874 69999999987642
Q ss_pred ccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCC-CCcEEEEeeCCcccCCcccccchhhHHhh
Q 018819 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEE-TGIAFASLYPGCIATTGLFREHIPLFRLL 324 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~-~gi~v~~v~PG~v~t~~~~~~~~~~~~~~ 324 (350)
.++...|+++|++++.++++++.|| .+ +|||||+|+||+|+|++... ......+.
T Consensus 141 ----------------------~~~~~~y~~sKaal~~l~r~lA~el-~~~~gIrVN~V~pG~i~t~~~~~-~~~~~~~~ 196 (241)
T PF13561_consen 141 ----------------------MPGYSAYSASKAALEGLTRSLAKEL-APKKGIRVNAVSPGPIETPMTER-IPGNEEFL 196 (241)
T ss_dssp ----------------------STTTHHHHHHHHHHHHHHHHHHHHH-GGHGTEEEEEEEESSBSSHHHHH-HHTHHHHH
T ss_pred ----------------------CccchhhHHHHHHHHHHHHHHHHHh-ccccCeeeeeecccceeccchhc-cccccchh
Confidence 4677799999999999999999999 66 89999999999999986321 11111222
Q ss_pred hhhhHHhhhcCccchhhhhhhcccc
Q 018819 325 FPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 325 ~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.......+..++.+|+|+|+.+++|
T Consensus 197 ~~~~~~~pl~r~~~~~evA~~v~fL 221 (241)
T PF13561_consen 197 EELKKRIPLGRLGTPEEVANAVLFL 221 (241)
T ss_dssp HHHHHHSTTSSHBEHHHHHHHHHHH
T ss_pred hhhhhhhccCCCcCHHHHHHHHHHH
Confidence 2222333446668999999988764
|
... |
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=240.40 Aligned_cols=223 Identities=18% Similarity=0.173 Sum_probs=178.2
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+++++|++|||||++|||.++|++|+++|+ +|++++|+.... +...++. +.++.++.+|++++++++++++++.+.
T Consensus 11 ~~~~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r~~~~~-~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 86 (255)
T PRK06841 11 FDLSGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDRSEDVA-EVAAQLL--GGNAKGLVCDVSDSQSVEAAVAAVISA 86 (255)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHhh--CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999995 899999986542 2333332 345678999999999999999999998
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|++|||||.... .++.+.+.++|++.+++|+.+++++++.+.+.|.+++ .++||++||..+..+
T Consensus 87 ~~~~d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~~--------- 154 (255)
T PRK06841 87 FGRIDILVNSAGVALL-APAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAG--GGKIVNLASQAGVVA--------- 154 (255)
T ss_pred hCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcC--CceEEEEcchhhccC---------
Confidence 9999999999998643 5666788999999999999999999999999997765 479999999887643
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.++...|+++|++++.++++++.++ .++||++++|+||+|+|++.......
T Consensus 155 --------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~pg~v~t~~~~~~~~~-- 205 (255)
T PRK06841 155 --------------------------LERHVAYCASKAGVVGMTKVLALEW-GPYGITVNAISPTVVLTELGKKAWAG-- 205 (255)
T ss_pred --------------------------CCCCchHHHHHHHHHHHHHHHHHHH-HhhCeEEEEEEeCcCcCcccccccch--
Confidence 3567789999999999999999999 56799999999999999864321110
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.............++.+|+++++.++++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~va~~~~~l 233 (255)
T PRK06841 206 EKGERAKKLIPAGRFAYPEEIAAAALFL 233 (255)
T ss_pred hHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 0000011111234578999999887653
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=241.69 Aligned_cols=224 Identities=20% Similarity=0.197 Sum_probs=177.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
+++++++|||||++|||+++|++|+++|+ +|++++|+.+.. +..+++...+.++.++.+|++++++++++++++.+.+
T Consensus 4 ~l~~~~ilItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK08628 4 NLKDKVVIVTGGASGIGAAISLRLAEEGA-IPVIFGRSAPDD-EFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKF 81 (258)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHcCC-cEEEEcCChhhH-HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999996 788888987665 5556665566788999999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|++|||||.... ..+.+.+ ++|+..+++|+.+++++++.+.|.+.+. .|+||++||..+..+
T Consensus 82 ~~id~vi~~ag~~~~-~~~~~~~-~~~~~~~~~n~~~~~~~~~~~~~~~~~~---~~~iv~~ss~~~~~~---------- 146 (258)
T PRK08628 82 GRIDGLVNNAGVNDG-VGLEAGR-EAFVASLERNLIHYYVMAHYCLPHLKAS---RGAIVNISSKTALTG---------- 146 (258)
T ss_pred CCCCEEEECCcccCC-CcccCCH-HHHHHHHhhhhHHHHHHHHHHHHHhhcc---CcEEEEECCHHhccC----------
Confidence 999999999997543 3444444 9999999999999999999999988754 369999999888743
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccc--hhh
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH--IPL 320 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~--~~~ 320 (350)
.+++..|++||++++.+++.++.|+ .++||++++|+||.|+|++..... .+.
T Consensus 147 -------------------------~~~~~~Y~~sK~a~~~~~~~l~~e~-~~~~i~v~~v~pg~v~t~~~~~~~~~~~~ 200 (258)
T PRK08628 147 -------------------------QGGTSGYAAAKGAQLALTREWAVAL-AKDGVRVNAVIPAEVMTPLYENWIATFDD 200 (258)
T ss_pred -------------------------CCCCchhHHHHHHHHHHHHHHHHHH-hhcCeEEEEEecCccCCHHHHHHhhhccC
Confidence 2467799999999999999999998 567999999999999998642100 010
Q ss_pred HHhhhhhhHHh-h-hcCccchhhhhhhcccc
Q 018819 321 FRLLFPPFQKY-I-TKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 ~~~~~~~~~~~-~-~~~~~s~~~~a~~i~~~ 349 (350)
.........+. . ...+.+|+++|+.++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l 231 (258)
T PRK08628 201 PEAKLAAITAKIPLGHRMTTAEEIADTAVFL 231 (258)
T ss_pred HHHHHHHHHhcCCccccCCCHHHHHHHHHHH
Confidence 00000011111 1 12468899999887653
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=238.85 Aligned_cols=223 Identities=17% Similarity=0.177 Sum_probs=172.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEe-cChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~-r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
.+++|++|||||++|||+++|+.|+++|+ +|++.. |+.+..+....++ +.++.++.||++|+++++++++++.+.
T Consensus 2 ~l~~k~ilItGas~gIG~~la~~l~~~G~-~vv~~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (253)
T PRK08642 2 QISEQTVLVTGGSRGLGAAIARAFAREGA-RVVVNYHQSEDAAEALADEL---GDRAIALQADVTDREQVQAMFATATEH 77 (253)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHh---CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999996 776654 4555555544444 246888999999999999999999888
Q ss_pred CCC-CcEEEEccccCC-----CCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCC
Q 018819 162 GRP-LDVLVCNAAVYL-----PTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLA 235 (350)
Q Consensus 162 ~g~-id~lv~~Ag~~~-----~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~ 235 (350)
+++ +|++|||||... ...++.+.+.++|++.+++|+.++++++++++|.|.+.+ .|+||++||..+..
T Consensus 78 ~g~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~g~iv~iss~~~~~---- 151 (253)
T PRK08642 78 FGKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQG--FGRIINIGTNLFQN---- 151 (253)
T ss_pred hCCCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcC--CeEEEEECCccccC----
Confidence 877 999999998742 123567889999999999999999999999999987654 47999999975532
Q ss_pred CCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccc
Q 018819 236 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 315 (350)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~ 315 (350)
+..+...|++||++++.+++++++++ .+.||+||+|+||+++|+....
T Consensus 152 -------------------------------~~~~~~~Y~~sK~a~~~l~~~la~~~-~~~~i~v~~i~pG~v~t~~~~~ 199 (253)
T PRK08642 152 -------------------------------PVVPYHDYTTAKAALLGLTRNLAAEL-GPYGITVNMVSGGLLRTTDASA 199 (253)
T ss_pred -------------------------------CCCCccchHHHHHHHHHHHHHHHHHh-CccCeEEEEEeecccCCchhhc
Confidence 12355689999999999999999999 6779999999999999975432
Q ss_pred cchhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 316 EHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
...+. .............+.+|+|+|+.+.+|
T Consensus 200 ~~~~~--~~~~~~~~~~~~~~~~~~~va~~~~~l 231 (253)
T PRK08642 200 ATPDE--VFDLIAATTPLRKVTTPQEFADAVLFF 231 (253)
T ss_pred cCCHH--HHHHHHhcCCcCCCCCHHHHHHHHHHH
Confidence 11111 000011111224578999999887654
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-31 Score=238.66 Aligned_cols=224 Identities=19% Similarity=0.162 Sum_probs=183.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
|+++||||++|||.+++++|+++|+ +|++++|+.+..++..+++...+.++.++.+|++|++++.++++.+.+.++++|
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id 79 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGF-AVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFD 79 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 5899999999999999999999996 899999998777777777766677889999999999999999999999999999
Q ss_pred EEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccc
Q 018819 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (350)
Q Consensus 167 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (350)
++|||||.... .++.+.+.++|++++++|+.+++++++.+++.|.+.+. +++||++||..+..+
T Consensus 80 ~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~~~-------------- 143 (254)
T TIGR02415 80 VMVNNAGVAPI-TPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGH-GGKIINAASIAGHEG-------------- 143 (254)
T ss_pred EEEECCCcCCC-CCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCC-CeEEEEecchhhcCC--------------
Confidence 99999998643 67778899999999999999999999999999887643 379999999887753
Q ss_pred cccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch--------
Q 018819 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-------- 318 (350)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~-------- 318 (350)
.+++..|+++|++++.+++.++.++ .+.||++++|+||+++|++......
T Consensus 144 ---------------------~~~~~~Y~~sK~a~~~~~~~l~~~~-~~~~i~v~~v~Pg~i~t~~~~~~~~~~~~~~~~ 201 (254)
T TIGR02415 144 ---------------------NPILSAYSSTKFAVRGLTQTAAQEL-APKGITVNAYCPGIVKTPMWEEIDEETSEIAGK 201 (254)
T ss_pred ---------------------CCCCcchHHHHHHHHHHHHHHHHHh-cccCeEEEEEecCcccChhhhhhhhhhhhcccC
Confidence 2567899999999999999999998 5679999999999999986422110
Q ss_pred hhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
+................+.+|+++++.+.++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l 232 (254)
T TIGR02415 202 PIGEGFEEFSSEIALGRPSEPEDVAGLVSFL 232 (254)
T ss_pred chHHHHHHHHhhCCCCCCCCHHHHHHHHHhh
Confidence 0000000111112234578999999988764
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=240.33 Aligned_cols=184 Identities=21% Similarity=0.274 Sum_probs=159.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|++|||||++|||+++++.|+++|+ +|++++|+.... .+.++.+++||++|+++++++++++.+.+
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~~~~---------~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 75 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSRPDD---------LPEGVEFVAADLTTAEGCAAVARAVLERL 75 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCChhhh---------cCCceeEEecCCCCHHHHHHHHHHHHHHc
Confidence 56899999999999999999999999995 899999985431 12357889999999999999999999999
Q ss_pred CCCcEEEEccccCC-CCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 163 g~id~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
+++|++|||||... ....+.+.+.++|++.+++|+.++++++++++|.|.+++ .|+||++||..+..+.
T Consensus 76 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~ii~isS~~~~~~~-------- 145 (260)
T PRK06523 76 GGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARG--SGVIIHVTSIQRRLPL-------- 145 (260)
T ss_pred CCCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC--CcEEEEEecccccCCC--------
Confidence 99999999999753 234566789999999999999999999999999998764 4799999998876421
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
..+...|+++|++++.+++.++.++ .+.||++++|+||+|+|++.
T Consensus 146 --------------------------~~~~~~Y~~sK~a~~~l~~~~a~~~-~~~gi~v~~i~Pg~v~t~~~ 190 (260)
T PRK06523 146 --------------------------PESTTAYAAAKAALSTYSKSLSKEV-APKGVRVNTVSPGWIETEAA 190 (260)
T ss_pred --------------------------CCCcchhHHHHHHHHHHHHHHHHHH-hhcCcEEEEEecCcccCccH
Confidence 1256789999999999999999999 66799999999999999875
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=237.79 Aligned_cols=221 Identities=24% Similarity=0.269 Sum_probs=177.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC-hhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD-FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~-~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
.+++++++||||++|||+++|++|+++|+ +|+++.|+ ....++..+++...+.++.++.+|++|.++++++++++.+.
T Consensus 2 ~~~~~~vlItG~~~~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (245)
T PRK12937 2 TLSNKVAIVTGASRGIGAAIARRLAADGF-AVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETA 80 (245)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999996 77766664 44455566666556678999999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|++|||||.... .++.+.+.++|++++++|+.+++++++++++.|.+ .|+||++||..+..+
T Consensus 81 ~~~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~----~~~iv~~ss~~~~~~--------- 146 (245)
T PRK12937 81 FGRIDVLVNNAGVMPL-GTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQ----GGRIINLSTSVIALP--------- 146 (245)
T ss_pred cCCCCEEEECCCCCCC-CChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhcc----CcEEEEEeeccccCC---------
Confidence 9999999999998643 56777889999999999999999999999998865 369999999876532
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.+++..|+++|++++.++++++.++ ...|+++++|+||+++|+++.....+..
T Consensus 147 --------------------------~~~~~~Y~~sK~a~~~~~~~~a~~~-~~~~i~v~~i~pg~~~t~~~~~~~~~~~ 199 (245)
T PRK12937 147 --------------------------LPGYGPYAASKAAVEGLVHVLANEL-RGRGITVNAVAPGPVATELFFNGKSAEQ 199 (245)
T ss_pred --------------------------CCCCchhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEEeCCccCchhcccCCHHH
Confidence 3567899999999999999999998 5679999999999999987543222110
Q ss_pred HhhhhhhHHh-hhcCccchhhhhhhccc
Q 018819 322 RLLFPPFQKY-ITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 322 ~~~~~~~~~~-~~~~~~s~~~~a~~i~~ 348 (350)
...+.+. ......+++++++.+.+
T Consensus 200 ---~~~~~~~~~~~~~~~~~d~a~~~~~ 224 (245)
T PRK12937 200 ---IDQLAGLAPLERLGTPEEIAAAVAF 224 (245)
T ss_pred ---HHHHHhcCCCCCCCCHHHHHHHHHH
Confidence 0111111 12345688898888754
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=243.57 Aligned_cols=183 Identities=25% Similarity=0.323 Sum_probs=159.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC-C
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG-R 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~-g 163 (350)
.+|++|||||+||||+++|+.|+++|+ +|++++|+.+.++++.+ ..+.++.+|++|.++++++++++.+.+ +
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~-~Vi~~~r~~~~~~~l~~------~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g 75 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGW-RVFATCRKEEDVAALEA------EGLEAFQLDYAEPESIAALVAQVLELSGG 75 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH------CCceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 357999999999999999999999995 99999999776655432 146788999999999999999987665 6
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCC
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (350)
++|++|||||.... ..+.+.+.++|+.++++|+.|++.+++.++|.|.+++ .|+||++||..+..+
T Consensus 76 ~id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~--~g~iv~isS~~~~~~----------- 141 (277)
T PRK05993 76 RLDALFNNGAYGQP-GAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQG--QGRIVQCSSILGLVP----------- 141 (277)
T ss_pred CccEEEECCCcCCC-CCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcC--CCEEEEECChhhcCC-----------
Confidence 89999999998654 6677889999999999999999999999999998765 479999999887642
Q ss_pred ccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.++...|++||++++.++++++.|+ .+.||+|++|+||+|+|++.
T Consensus 142 ------------------------~~~~~~Y~asK~a~~~~~~~l~~el-~~~gi~v~~v~Pg~v~T~~~ 186 (277)
T PRK05993 142 ------------------------MKYRGAYNASKFAIEGLSLTLRMEL-QGSGIHVSLIEPGPIETRFR 186 (277)
T ss_pred ------------------------CCccchHHHHHHHHHHHHHHHHHHh-hhhCCEEEEEecCCccCchh
Confidence 3567799999999999999999999 67799999999999999865
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-31 Score=237.95 Aligned_cols=222 Identities=21% Similarity=0.292 Sum_probs=176.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|+++||||++|||++++++|+++|+ +|++++|+.+..++..+++ +.++.+++||++|.+++..+++.+.+.+
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARAEL---GESALVIRADAGDVAAQKALAQALAEAF 78 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHh---CCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999995 8999999876666655554 4568889999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|++|||||.... .++.+.+.++|++++++|+.+++++++++.|.|.+ .+++|+++|..+..+
T Consensus 79 ~~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~----~~~~i~~~S~~~~~~---------- 143 (249)
T PRK06500 79 GRLDAVFINAGVAKF-APLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLAN----PASIVLNGSINAHIG---------- 143 (249)
T ss_pred CCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhc----CCEEEEEechHhccC----------
Confidence 999999999998643 56677899999999999999999999999999865 358999999877653
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh--
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL-- 320 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~-- 320 (350)
.++...|+++|++++.++++++.|+ .++||++++|+||.++|++......+.
T Consensus 144 -------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~i~pg~~~t~~~~~~~~~~~~ 197 (249)
T PRK06500 144 -------------------------MPNSSVYAASKAALLSLAKTLSGEL-LPRGIRVNAVSPGPVQTPLYGKLGLPEAT 197 (249)
T ss_pred -------------------------CCCccHHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCcCCCHHHHhhccCccc
Confidence 2466799999999999999999998 567999999999999998642211000
Q ss_pred HHhhhhhhHH-hhhcCccchhhhhhhcccc
Q 018819 321 FRLLFPPFQK-YITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 ~~~~~~~~~~-~~~~~~~s~~~~a~~i~~~ 349 (350)
.......+.+ .....+.+|+++++.+.++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~va~~~~~l 227 (249)
T PRK06500 198 LDAVAAQIQALVPLGRFGTPEEIAKAVLYL 227 (249)
T ss_pred hHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 0000000001 1123456899999887654
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-31 Score=240.76 Aligned_cols=223 Identities=20% Similarity=0.216 Sum_probs=178.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCc-eEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKEN-YTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~-v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
|+++||||++|||++++++|+++|+ +|++++|+.+..++..+++...+.+ +.++.||++|+++++++++++.+.++++
T Consensus 1 k~vlItGas~giG~~la~~la~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGA-ELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSM 79 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence 4799999999999999999999996 8999999987777777666544443 4567899999999999999999989999
Q ss_pred cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcc
Q 018819 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (350)
|++|||+|... ...+.+.+.++|+..+++|+.++++++++++|.|.+++. .|+||++||..+..+
T Consensus 80 d~lv~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~-~g~ii~isS~~~~~~------------- 144 (272)
T PRK07832 80 DVVMNIAGISA-WGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGR-GGHLVNVSSAAGLVA------------- 144 (272)
T ss_pred CEEEECCCCCC-CCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-CcEEEEEccccccCC-------------
Confidence 99999999864 356778899999999999999999999999999976432 479999999877543
Q ss_pred ccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh---HH
Q 018819 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL---FR 322 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~---~~ 322 (350)
.++...|++||+++.++++.++.|+ .+.||+|++|+||+++|+++....... ..
T Consensus 145 ----------------------~~~~~~Y~~sK~a~~~~~~~l~~e~-~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~ 201 (272)
T PRK07832 145 ----------------------LPWHAAYSASKFGLRGLSEVLRFDL-ARHGIGVSVVVPGAVKTPLVNTVEIAGVDRED 201 (272)
T ss_pred ----------------------CCCCcchHHHHHHHHHHHHHHHHHh-hhcCcEEEEEecCcccCcchhcccccccCcch
Confidence 3567789999999999999999998 567999999999999998653211000 00
Q ss_pred hhhhhhHHhhhcCccchhhhhhhccc
Q 018819 323 LLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 323 ~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
.....+.........+|+++|+.+++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~vA~~~~~ 227 (272)
T PRK07832 202 PRVQKWVDRFRGHAVTPEKAAEKILA 227 (272)
T ss_pred hhHHHHHHhcccCCCCHHHHHHHHHH
Confidence 00011112223456899999998865
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-31 Score=237.24 Aligned_cols=223 Identities=20% Similarity=0.174 Sum_probs=178.2
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+.+++|++|||||+||||++++++|+++|+ +|++++|+....+...+++...+.++.++.+|++|.++++++++++.+.
T Consensus 2 ~~~~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (250)
T PRK07774 2 GRFDDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSA 80 (250)
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 346789999999999999999999999995 8999999877766666666544556788999999999999999999999
Q ss_pred CCCCcEEEEccccCCC--CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLP--TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~--~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (350)
++++|+||||||+... ..++.+.+.++|++.+++|+.+++++++++++.|.+.+ .|+||++||..++
T Consensus 81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~--------- 149 (250)
T PRK07774 81 FGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRG--GGAIVNQSSTAAW--------- 149 (250)
T ss_pred hCCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhC--CcEEEEEeccccc---------
Confidence 9999999999998532 24566778999999999999999999999999987754 4799999998765
Q ss_pred CCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchh
Q 018819 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (350)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~ 319 (350)
.+...|++||++++.+++++++++ ...||++++++||.++|++.... .|
T Consensus 150 -----------------------------~~~~~Y~~sK~a~~~~~~~l~~~~-~~~~i~v~~v~pg~~~t~~~~~~-~~ 198 (250)
T PRK07774 150 -----------------------------LYSNFYGLAKVGLNGLTQQLAREL-GGMNIRVNAIAPGPIDTEATRTV-TP 198 (250)
T ss_pred -----------------------------CCccccHHHHHHHHHHHHHHHHHh-CccCeEEEEEecCcccCcccccc-CC
Confidence 234689999999999999999998 56799999999999999865321 11
Q ss_pred hHHhhhhhhHHhhhcCccchhhhhhhccc
Q 018819 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
. ................+++++++.++.
T Consensus 199 ~-~~~~~~~~~~~~~~~~~~~d~a~~~~~ 226 (250)
T PRK07774 199 K-EFVADMVKGIPLSRMGTPEDLVGMCLF 226 (250)
T ss_pred H-HHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 1 111111111112335678888877654
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-31 Score=236.26 Aligned_cols=215 Identities=20% Similarity=0.198 Sum_probs=168.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
+|++|||||++|||+++|++|+++|+ +|++++|+.+...+. +...+ +.++.+|++|+++++++++++.+.++++
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~---~~~~~--~~~~~~D~~~~~~~~~~~~~~~~~~~~i 75 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQ-PVIVSYRTHYPAIDG---LRQAG--AQCIQADFSTNAGIMAFIDELKQHTDGL 75 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCchhHHHH---HHHcC--CEEEEcCCCCHHHHHHHHHHHHhhCCCc
Confidence 46899999999999999999999995 999999986543322 22222 5788999999999999999999999999
Q ss_pred cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcc
Q 018819 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (350)
|++|||||.... ....+.+.++|++++++|+.+++.+++.++|.|.+.+...|+||++||..+..+
T Consensus 76 d~lv~~ag~~~~-~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~~------------- 141 (236)
T PRK06483 76 RAIIHNASDWLA-EKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVEKG------------- 141 (236)
T ss_pred cEEEECCccccC-CCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhccC-------------
Confidence 999999998544 345577899999999999999999999999999775422369999999876542
Q ss_pred ccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhhh
Q 018819 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 325 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~ 325 (350)
.+++..|++||++++.+++.++.|+ .+ +|+||+|+||++.|+.... +. ...
T Consensus 142 ----------------------~~~~~~Y~asKaal~~l~~~~a~e~-~~-~irvn~v~Pg~~~~~~~~~---~~--~~~ 192 (236)
T PRK06483 142 ----------------------SDKHIAYAASKAALDNMTLSFAAKL-AP-EVKVNSIAPALILFNEGDD---AA--YRQ 192 (236)
T ss_pred ----------------------CCCCccHHHHHHHHHHHHHHHHHHH-CC-CcEEEEEccCceecCCCCC---HH--HHH
Confidence 2567799999999999999999999 45 5999999999998753211 10 000
Q ss_pred hhhHHhhhcCccchhhhhhhcccc
Q 018819 326 PPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 326 ~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
....+....+...|+|+++.+.++
T Consensus 193 ~~~~~~~~~~~~~~~~va~~~~~l 216 (236)
T PRK06483 193 KALAKSLLKIEPGEEEIIDLVDYL 216 (236)
T ss_pred HHhccCccccCCCHHHHHHHHHHH
Confidence 111122234456899999887653
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-31 Score=241.23 Aligned_cols=183 Identities=27% Similarity=0.271 Sum_probs=160.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
++|+++||||+||||++++++|+++|+ +|++++|+.+++++... ..+.++.||++|+++++++++++.+.+++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~l~~~~~------~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~ 74 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGY-TVYGAARRVDKMEDLAS------LGVHPLSLDVTDEASIKAAVDTIIAEEGR 74 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh------CCCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 568999999999999999999999995 99999998766554322 24778999999999999999999999999
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
+|++|||||.... .++.+.+.++|+..+++|+.+++.+++.++|.|.+++ .|+||++||..+..+
T Consensus 75 id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~--~g~iv~isS~~~~~~------------ 139 (273)
T PRK06182 75 IDVLVNNAGYGSY-GAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQR--SGRIINISSMGGKIY------------ 139 (273)
T ss_pred CCEEEECCCcCCC-CchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcC--CCEEEEEcchhhcCC------------
Confidence 9999999998643 6777889999999999999999999999999998765 479999999876542
Q ss_pred cccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.+....|++||++++.+++.++.|+ .+.||++++|+||+|+|++.
T Consensus 140 -----------------------~~~~~~Y~~sKaa~~~~~~~l~~e~-~~~gi~v~~v~Pg~v~t~~~ 184 (273)
T PRK06182 140 -----------------------TPLGAWYHATKFALEGFSDALRLEV-APFGIDVVVIEPGGIKTEWG 184 (273)
T ss_pred -----------------------CCCccHhHHHHHHHHHHHHHHHHHh-cccCCEEEEEecCCcccccc
Confidence 2455679999999999999999998 67799999999999999864
|
|
| >KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=223.83 Aligned_cols=220 Identities=18% Similarity=0.176 Sum_probs=182.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
++.|+.+++||+..|||+++++.|++.|| .||.+.|+++.+..+.++.. ..+..++.|+++++.+.+++...
T Consensus 4 ~laG~~vlvTgagaGIG~~~v~~La~aGA-~ViAvaR~~a~L~sLV~e~p---~~I~Pi~~Dls~wea~~~~l~~v---- 75 (245)
T KOG1207|consen 4 SLAGVIVLVTGAGAGIGKEIVLSLAKAGA-QVIAVARNEANLLSLVKETP---SLIIPIVGDLSAWEALFKLLVPV---- 75 (245)
T ss_pred cccceEEEeecccccccHHHHHHHHhcCC-EEEEEecCHHHHHHHHhhCC---cceeeeEecccHHHHHHHhhccc----
Confidence 57899999999999999999999999997 99999999988888877654 34888999999988887766543
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|++|||||+... .+|.+++.+.|++.|++|+.+.+++.|...+.+..+.. .|.||++||.++..
T Consensus 76 ~pidgLVNNAgvA~~-~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~-~GaIVNvSSqas~R----------- 142 (245)
T KOG1207|consen 76 FPIDGLVNNAGVATN-HPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQI-KGAIVNVSSQASIR----------- 142 (245)
T ss_pred Cchhhhhccchhhhc-chHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccC-CceEEEecchhccc-----------
Confidence 689999999999644 78999999999999999999999999998887766554 47899999999875
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
++.++..|+++|+|+++++++++.|+ .+++||||+|+|-.|.|.|-...+....
T Consensus 143 ------------------------~~~nHtvYcatKaALDmlTk~lAlEL-Gp~kIRVNsVNPTVVmT~MG~dnWSDP~- 196 (245)
T KOG1207|consen 143 ------------------------PLDNHTVYCATKAALDMLTKCLALEL-GPQKIRVNSVNPTVVMTDMGRDNWSDPD- 196 (245)
T ss_pred ------------------------ccCCceEEeecHHHHHHHHHHHHHhh-CcceeEeeccCCeEEEecccccccCCch-
Confidence 35788999999999999999999999 7889999999999999987544333211
Q ss_pred hhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 323 LLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
...+.+.+....++..++|+.+.+++|
T Consensus 197 K~k~mL~riPl~rFaEV~eVVnA~lfL 223 (245)
T KOG1207|consen 197 KKKKMLDRIPLKRFAEVDEVVNAVLFL 223 (245)
T ss_pred hccchhhhCchhhhhHHHHHHhhheee
Confidence 122344444556667778877776654
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-31 Score=237.06 Aligned_cols=223 Identities=20% Similarity=0.274 Sum_probs=179.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEe-cChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~-r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
.+++|+++||||++|||.++|++|+++|+ +|++.. |+.+..++..+++...+.++.+++||++|++++.++++++.+.
T Consensus 3 ~~~~~~~lItG~s~~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (247)
T PRK12935 3 QLNGKVAIVTGGAKGIGKAITVALAQEGA-KVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNH 81 (247)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 35789999999999999999999999996 666654 4555666666666656667999999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|++|||||.... ..+.+.+.+++++.+++|+.++++++++++|.|.+.+ .++||++||..+..+.
T Consensus 82 ~~~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~~~-------- 150 (247)
T PRK12935 82 FGKVDILVNNAGITRD-RTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAE--EGRIISISSIIGQAGG-------- 150 (247)
T ss_pred cCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEEcchhhcCCC--------
Confidence 9999999999998654 5666788899999999999999999999999997654 4699999998876532
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
+++..|++||++++.+++.++.++ .+.||++++|+||+++|++... .+..
T Consensus 151 ---------------------------~~~~~Y~~sK~a~~~~~~~l~~~~-~~~~i~v~~v~pg~v~t~~~~~--~~~~ 200 (247)
T PRK12935 151 ---------------------------FGQTNYSAAKAGMLGFTKSLALEL-AKTNVTVNAICPGFIDTEMVAE--VPEE 200 (247)
T ss_pred ---------------------------CCCcchHHHHHHHHHHHHHHHHHH-HHcCcEEEEEEeCCCcChhhhh--ccHH
Confidence 466799999999999999999998 5679999999999999986432 1110
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhccc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
.. ...........+..|||+++.+++
T Consensus 201 ~~-~~~~~~~~~~~~~~~edva~~~~~ 226 (247)
T PRK12935 201 VR-QKIVAKIPKKRFGQADEIAKGVVY 226 (247)
T ss_pred HH-HHHHHhCCCCCCcCHHHHHHHHHH
Confidence 00 011111112446789999988865
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-31 Score=240.60 Aligned_cols=220 Identities=21% Similarity=0.266 Sum_probs=173.0
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+.+++|++|||||++|||++++++|+++|+ +|++.+|+..... ..++.++.+|++|+++++++++++.+.
T Consensus 5 ~~l~~k~vlItG~s~gIG~~la~~l~~~G~-~v~~~~~~~~~~~---------~~~~~~~~~D~~~~~~~~~~~~~~~~~ 74 (266)
T PRK06171 5 LNLQGKIIIVTGGSSGIGLAIVKELLANGA-NVVNADIHGGDGQ---------HENYQFVPTDVSSAEEVNHTVAEIIEK 74 (266)
T ss_pred ccCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCccccc---------cCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999995 8888888754321 235788999999999999999999999
Q ss_pred CCCCcEEEEccccCCCC--------CCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPT--------AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNT 233 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~--------~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~ 233 (350)
++++|++|||||..... ..+.+.+.++|++++++|+.+++++++++.++|.+++ .|+||++||..+..+
T Consensus 75 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~~- 151 (266)
T PRK06171 75 FGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQH--DGVIVNMSSEAGLEG- 151 (266)
T ss_pred cCCCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcC--CcEEEEEccccccCC-
Confidence 99999999999975331 1234678999999999999999999999999998765 479999999988753
Q ss_pred CCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCccc-CCc
Q 018819 234 LAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA-TTG 312 (350)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~-t~~ 312 (350)
.+++..|+++|++++.++++++.++ .++||+||+|+||+++ |++
T Consensus 152 ----------------------------------~~~~~~Y~~sK~a~~~l~~~la~e~-~~~gi~v~~v~pG~~~~t~~ 196 (266)
T PRK06171 152 ----------------------------------SEGQSCYAATKAALNSFTRSWAKEL-GKHNIRVVGVAPGILEATGL 196 (266)
T ss_pred ----------------------------------CCCCchhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeccccccCCC
Confidence 2567899999999999999999999 6779999999999997 443
Q ss_pred ccccchhhH--------HhhhhhhH---HhhhcCccchhhhhhhcccc
Q 018819 313 LFREHIPLF--------RLLFPPFQ---KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 313 ~~~~~~~~~--------~~~~~~~~---~~~~~~~~s~~~~a~~i~~~ 349 (350)
......... ......+. .....++.+|+|+|+.+.+|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~eva~~~~fl 244 (266)
T PRK06171 197 RTPEYEEALAYTRGITVEQLRAGYTKTSTIPLGRSGKLSEVADLVCYL 244 (266)
T ss_pred cChhhhhhhccccCCCHHHHHhhhcccccccCCCCCCHHHhhhheeee
Confidence 211110000 00000111 12235677999999988765
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-31 Score=238.15 Aligned_cols=221 Identities=19% Similarity=0.172 Sum_probs=174.9
Q ss_pred ccCCCEEEEEcCCC--chHHHHHHHHHHcCCcEEEEEecC-----------hhHHHHHHHHhccCCCceEEEEccCCCHH
Q 018819 83 TLRKGSVIITGASS--GLGLATAKALAETGKWHIIMACRD-----------FLKAERAAKSAGMAKENYTIMHLDLASLD 149 (350)
Q Consensus 83 ~l~~~~~lItGgs~--gIG~~ia~~la~~Ga~~Vi~~~r~-----------~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~ 149 (350)
.+++|++|||||++ |||.++|++|+++|+ +|++++|+ ........+++...+.++.++.||+++.+
T Consensus 2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 80 (256)
T PRK12748 2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGI-DIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPY 80 (256)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCC-cEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 46789999999994 999999999999995 88988887 22222244445445667999999999999
Q ss_pred HHHHHHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCC
Q 018819 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229 (350)
Q Consensus 150 ~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~ 229 (350)
+++.+++++.+.++++|++|||||+... .++.+.+.++|++.+++|+.+++++++++.+.|.+.. .++||++||..+
T Consensus 81 ~~~~~~~~~~~~~g~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~ss~~~ 157 (256)
T PRK12748 81 APNRVFYAVSERLGDPSILINNAAYSTH-TRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKA--GGRIINLTSGQS 157 (256)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCcCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcC--CeEEEEECCccc
Confidence 9999999999999999999999998643 5677889999999999999999999999999987654 479999999876
Q ss_pred CCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCccc
Q 018819 230 NTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA 309 (350)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~ 309 (350)
..+ .++...|+++|++++.+++.++.++ ...||++++|+||+++
T Consensus 158 ~~~-----------------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~~i~v~~i~Pg~~~ 201 (256)
T PRK12748 158 LGP-----------------------------------MPDELAYAATKGAIEAFTKSLAPEL-AEKGITVNAVNPGPTD 201 (256)
T ss_pred cCC-----------------------------------CCCchHHHHHHHHHHHHHHHHHHHH-HHhCeEEEEEEeCccc
Confidence 532 3567789999999999999999998 5679999999999999
Q ss_pred CCcccccchhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 310 TTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 310 t~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
|++...... . .........++.+|+++|+.+.++
T Consensus 202 t~~~~~~~~---~---~~~~~~~~~~~~~~~~~a~~~~~l 235 (256)
T PRK12748 202 TGWITEELK---H---HLVPKFPQGRVGEPVDAARLIAFL 235 (256)
T ss_pred CCCCChhHH---H---hhhccCCCCCCcCHHHHHHHHHHH
Confidence 986432110 0 000111123456788888776653
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-31 Score=236.57 Aligned_cols=227 Identities=17% Similarity=0.125 Sum_probs=183.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
+++++++|||||+||||.+++++|+++|+ +|++++|+.+..++....+.. +.++.++.||++|+++++++++++.+.+
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGA-RVVVTDRNEEAAERVAAEILA-GGRAIAVAADVSDEADVEAAVAAALERF 79 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999995 899999998777777666654 5678899999999999999999998888
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|++|||||......++.+.+.++|++.+++|+.+++.+++.+++.|.+++ .++||++||..+..+
T Consensus 80 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~~---------- 147 (251)
T PRK07231 80 GSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEG--GGAIVNVASTAGLRP---------- 147 (251)
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC--CcEEEEEcChhhcCC----------
Confidence 99999999999865545677889999999999999999999999999997654 479999999877642
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh-H
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL-F 321 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~-~ 321 (350)
.++...|+.+|++++.+++.++.++ ++.||++++|+||+++|++........ .
T Consensus 148 -------------------------~~~~~~y~~sk~~~~~~~~~~a~~~-~~~~i~v~~i~pg~~~t~~~~~~~~~~~~ 201 (251)
T PRK07231 148 -------------------------RPGLGWYNASKGAVITLTKALAAEL-GPDKIRVNAVAPVVVETGLLEAFMGEPTP 201 (251)
T ss_pred -------------------------CCCchHHHHHHHHHHHHHHHHHHHh-hhhCeEEEEEEECccCCCcchhhhcccCh
Confidence 3567789999999999999999998 566999999999999998643211100 0
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..............+.+|+|+|+.++++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~dva~~~~~l 229 (251)
T PRK07231 202 ENRAKFLATIPLGRLGTPEDIANAALFL 229 (251)
T ss_pred HHHHHHhcCCCCCCCcCHHHHHHHHHHH
Confidence 0000111111124467899998877653
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-31 Score=239.08 Aligned_cols=221 Identities=20% Similarity=0.229 Sum_probs=176.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.++++|||||+||||++++++|+++|+ +|++++|+.+..+.+.+. .+.++.++.+|++|++++.++++.+.+.+++
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~l~~~---~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~ 78 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGH-RVVGTVRSEAARADFEAL---HPDRALARLLDVTDFDAIDAVVADAEATFGP 78 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcC-EEEEEeCCHHHHHHHHhh---cCCCeeEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 467999999999999999999999995 899999987766554332 2346888999999999999999999998999
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
+|++|||||.... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||.++..+
T Consensus 79 ~d~vv~~ag~~~~-~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~--~~~iv~iSS~~~~~~------------ 143 (277)
T PRK06180 79 IDVLVNNAGYGHE-GAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARR--RGHIVNITSMGGLIT------------ 143 (277)
T ss_pred CCEEEECCCccCC-cccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccC--CCEEEEEecccccCC------------
Confidence 9999999998643 6677889999999999999999999999999998765 469999999987753
Q ss_pred cccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccc------h
Q 018819 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH------I 318 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~------~ 318 (350)
.++...|+++|++++.++++++.++ .+.|+++++|+||+++|++..... .
T Consensus 144 -----------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~ 199 (277)
T PRK06180 144 -----------------------MPGIGYYCGSKFALEGISESLAKEV-APFGIHVTAVEPGSFRTDWAGRSMVRTPRSI 199 (277)
T ss_pred -----------------------CCCcchhHHHHHHHHHHHHHHHHHh-hhhCcEEEEEecCCcccCccccccccCCCCc
Confidence 3577899999999999999999998 567999999999999997532110 1
Q ss_pred hhHHhhhhhh----HHhhhcCccchhhhhhhccc
Q 018819 319 PLFRLLFPPF----QKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 319 ~~~~~~~~~~----~~~~~~~~~s~~~~a~~i~~ 348 (350)
+......... .......+.+|+++++.++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~ 233 (277)
T PRK06180 200 ADYDALFGPIRQAREAKSGKQPGDPAKAAQAILA 233 (277)
T ss_pred HhHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHH
Confidence 1000001111 11123446789999988764
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-31 Score=263.08 Aligned_cols=224 Identities=21% Similarity=0.260 Sum_probs=179.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
.++|++|||||++|||+++|+.|+++|+ +|++++|+.+.+++..+++ +.++.++++|++|+++++++++++.+.++
T Consensus 3 ~~~k~~lITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 78 (520)
T PRK06484 3 AQSRVVLVTGAAGGIGRAACQRFARAGD-QVVVADRNVERARERADSL---GPDHHALAMDVSDEAQIREGFEQLHREFG 78 (520)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCceeEEEeccCCHHHHHHHHHHHHHHhC
Confidence 4689999999999999999999999995 9999999988777666655 35678899999999999999999999999
Q ss_pred CCcEEEEccccCCC-CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 164 PLDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 164 ~id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
++|+||||||+..+ ..++.+.+.++|++++++|+.++++++++++|+|.+++. +++||++||..+..+
T Consensus 79 ~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-g~~iv~isS~~~~~~---------- 147 (520)
T PRK06484 79 RIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGH-GAAIVNVASGAGLVA---------- 147 (520)
T ss_pred CCCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CCeEEEECCcccCCC----------
Confidence 99999999998432 245678899999999999999999999999999976542 249999999988753
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.++...|+++|+++..+++.++.|+ .++||+|++|+||+|+|++.... .+...
T Consensus 148 -------------------------~~~~~~Y~asKaal~~l~~~la~e~-~~~~i~v~~i~Pg~v~t~~~~~~-~~~~~ 200 (520)
T PRK06484 148 -------------------------LPKRTAYSASKAAVISLTRSLACEW-AAKGIRVNAVLPGYVRTQMVAEL-ERAGK 200 (520)
T ss_pred -------------------------CCCCchHHHHHHHHHHHHHHHHHHh-hhhCeEEEEEccCCcCchhhhhh-cccch
Confidence 3567899999999999999999999 67799999999999999875321 01000
Q ss_pred hhhhhhH-HhhhcCccchhhhhhhcccc
Q 018819 323 LLFPPFQ-KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~-~~~~~~~~s~~~~a~~i~~~ 349 (350)
....... ......+.+|+++++.+.++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~va~~v~~l 228 (520)
T PRK06484 201 LDPSAVRSRIPLGRLGRPEEIAEAVFFL 228 (520)
T ss_pred hhhHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 0000111 11123456889988877653
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-31 Score=243.43 Aligned_cols=232 Identities=30% Similarity=0.385 Sum_probs=175.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|++|||||++|||+++|+.|+++|+ +|++++|+.+..++..+++. ++.++.+|++|.++++++++++.+.+
T Consensus 23 ~l~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~~~~l~----~v~~~~~Dl~d~~~v~~~~~~~~~~~ 97 (315)
T PRK06196 23 DLSGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARRPDVAREALAGID----GVEVVMLDLADLESVRAFAERFLDSG 97 (315)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhh----hCeEEEccCCCHHHHHHHHHHHHhcC
Confidence 46789999999999999999999999995 89999999877776666553 37889999999999999999999989
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|+||||||+... ..+.+.++|+..+++|+.|++++++.++|.|.+++ .++||++||..+..+..
T Consensus 98 ~~iD~li~nAg~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~--~~~iV~vSS~~~~~~~~-------- 164 (315)
T PRK06196 98 RRIDILINNAGVMAC---PETRVGDGWEAQFATNHLGHFALVNLLWPALAAGA--GARVVALSSAGHRRSPI-------- 164 (315)
T ss_pred CCCCEEEECCCCCCC---CCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcC--CCeEEEECCHHhccCCC--------
Confidence 999999999998532 12456788999999999999999999999998764 47999999986543210
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.+.+. ....++++...|+.||++++.+++.++.++ .++||++++|+||+|+|++..... +...
T Consensus 165 ~~~~~---------------~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~-~~~gi~v~~v~PG~v~t~~~~~~~-~~~~ 227 (315)
T PRK06196 165 RWDDP---------------HFTRGYDKWLAYGQSKTANALFAVHLDKLG-KDQGVRAFSVHPGGILTPLQRHLP-REEQ 227 (315)
T ss_pred Ccccc---------------CccCCCChHHHHHHHHHHHHHHHHHHHHHh-cCCCcEEEEeeCCcccCCccccCC-hhhh
Confidence 00000 001234567889999999999999999998 567999999999999998642211 1000
Q ss_pred hhhhhhH---HhhhcCccchhhhhhhcccc
Q 018819 323 LLFPPFQ---KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~---~~~~~~~~s~~~~a~~i~~~ 349 (350)
.....+. ......+.+|+++|..++++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l 257 (315)
T PRK06196 228 VALGWVDEHGNPIDPGFKTPAQGAATQVWA 257 (315)
T ss_pred hhhhhhhhhhhhhhhhcCCHhHHHHHHHHH
Confidence 0000000 01111357899999888753
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-30 Score=237.75 Aligned_cols=221 Identities=23% Similarity=0.233 Sum_probs=177.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.+|++|||||+||||++++++|+++|+ +|++++|+.+..++..+.+ +..+.++++|++|+++++++++++.+.+++
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 77 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERGD-RVVATARDTATLADLAEKY---GDRLLPLALDVTDRAAVFAAVETAVEHFGR 77 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhc---cCCeeEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 467999999999999999999999994 8999999987766655443 346788999999999999999999998999
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
+|++|||||.... .++.+.+.++|++++++|+.+++++++.++|.|.+++ .++||++||..+..+
T Consensus 78 ~d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~vsS~~~~~~------------ 142 (275)
T PRK08263 78 LDIVVNNAGYGLF-GMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQR--SGHIIQISSIGGISA------------ 142 (275)
T ss_pred CCEEEECCCCccc-cccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CCEEEEEcChhhcCC------------
Confidence 9999999998654 6777889999999999999999999999999998765 469999999887643
Q ss_pred cccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccc---hhh-
Q 018819 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH---IPL- 320 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~---~~~- 320 (350)
.++...|+++|++++.+++.++.++ .+.||++++|+||+++|++..... .+.
T Consensus 143 -----------------------~~~~~~Y~~sKaa~~~~~~~la~e~-~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~ 198 (275)
T PRK08263 143 -----------------------FPMSGIYHASKWALEGMSEALAQEV-AEFGIKVTLVEPGGYSTDWAGTSAKRATPLD 198 (275)
T ss_pred -----------------------CCCccHHHHHHHHHHHHHHHHHHHh-hhhCcEEEEEecCCccCCccccccccCCCch
Confidence 2566789999999999999999998 567999999999999998752111 011
Q ss_pred --HHhhhhhhHHhhhcCc-cchhhhhhhccc
Q 018819 321 --FRLLFPPFQKYITKGY-VSEDEAGKRLAQ 348 (350)
Q Consensus 321 --~~~~~~~~~~~~~~~~-~s~~~~a~~i~~ 348 (350)
.+.............+ .+|+++++.++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~p~dva~~~~~ 229 (275)
T PRK08263 199 AYDTLREELAEQWSERSVDGDPEAAAEALLK 229 (275)
T ss_pred hhhhHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 1110111111122345 789999987764
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-31 Score=235.27 Aligned_cols=225 Identities=23% Similarity=0.202 Sum_probs=176.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEE-ecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMA-CRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~-~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
|++|||||++|||..+++.|+++|+ +|+++ .|+.+..+....++...+.++.++.||++|.++++++++++.+.++++
T Consensus 3 k~ilItGas~giG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 81 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLAAARGW-SVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAFGRL 81 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHhcCCC
Confidence 5899999999999999999999996 66655 566666666666666556689999999999999999999999888999
Q ss_pred cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCC-CCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY-PSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~-~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
|++|||||.......+.+.+.++|+.++++|+.+++++++.+++.+..++. ..++||++||..+..+.
T Consensus 82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~----------- 150 (248)
T PRK06947 82 DALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGS----------- 150 (248)
T ss_pred CEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCC-----------
Confidence 999999998654456778899999999999999999999999998865421 13689999998877542
Q ss_pred cccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhh
Q 018819 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLL 324 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~ 324 (350)
......|++||++++.++++++.++ .+.||+|++|+||+++|++......+....
T Consensus 151 -----------------------~~~~~~Y~~sK~~~~~~~~~la~~~-~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~- 205 (248)
T PRK06947 151 -----------------------PNEYVDYAGSKGAVDTLTLGLAKEL-GPHGVRVNAVRPGLIETEIHASGGQPGRAA- 205 (248)
T ss_pred -----------------------CCCCcccHhhHHHHHHHHHHHHHHh-hhhCcEEEEEeccCcccccccccCCHHHHH-
Confidence 1124579999999999999999998 567999999999999999753221121100
Q ss_pred hhhhHHhhhcCccchhhhhhhcccc
Q 018819 325 FPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 325 ~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
............++|++++.++++
T Consensus 206 -~~~~~~~~~~~~~~e~va~~~~~l 229 (248)
T PRK06947 206 -RLGAQTPLGRAGEADEVAETIVWL 229 (248)
T ss_pred -HHhhcCCCCCCcCHHHHHHHHHHH
Confidence 000011123457899999887654
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-31 Score=235.06 Aligned_cols=225 Identities=24% Similarity=0.222 Sum_probs=184.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|+++||||++|||+++++.|+++|+ +|++++|+.+..+...++++..+.++.++.+|++|+++++++++++.+.+
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAAL 82 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46789999999999999999999999995 88889999887777777776556689999999999999999999999988
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|++|||+|.... ..+.+.+.++|+..+++|+.+++++++++.+.|.+++ .|+||++||..+..+
T Consensus 83 ~~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~~---------- 149 (250)
T PRK12939 83 GGLDGLVNNAGITNS-KSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSG--RGRIVNLASDTALWG---------- 149 (250)
T ss_pred CCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CeEEEEECchhhccC----------
Confidence 999999999998654 5667789999999999999999999999999987755 479999999877643
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.++...|+++|++++.+++.++.++ ...+|++++|+||+++|++...... ..
T Consensus 150 -------------------------~~~~~~y~~sK~~~~~~~~~l~~~~-~~~~i~v~~v~pg~v~t~~~~~~~~--~~ 201 (250)
T PRK12939 150 -------------------------APKLGAYVASKGAVIGMTRSLAREL-GGRGITVNAIAPGLTATEATAYVPA--DE 201 (250)
T ss_pred -------------------------CCCcchHHHHHHHHHHHHHHHHHHH-hhhCEEEEEEEECCCCCccccccCC--hH
Confidence 2456789999999999999999998 5679999999999999987532111 00
Q ss_pred hhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 323 LLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
+............+.+++|+++.++.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~dva~~~~~l 228 (250)
T PRK12939 202 RHAYYLKGRALERLQVPDDVAGAVLFL 228 (250)
T ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 100111111234568899999887653
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.1e-31 Score=236.77 Aligned_cols=216 Identities=24% Similarity=0.256 Sum_probs=178.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.++++++|||||++|||++++++|+++|+ +|++++|+.+..++...++ ..+.++.++.+|++|+++++++++.+.+ +
T Consensus 2 ~~~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~~~-~ 78 (263)
T PRK09072 2 DLKDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARL-PYPGRHRWVVADLTSEAGREAVLARARE-M 78 (263)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHH-hcCCceEEEEccCCCHHHHHHHHHHHHh-c
Confidence 46789999999999999999999999995 8999999988877777666 3456789999999999999999998876 7
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|++|||||.... .++.+.+.+++++++++|+.|++++++.+.++|.+++ .++||++||..+..+
T Consensus 79 ~~id~lv~~ag~~~~-~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~~---------- 145 (263)
T PRK09072 79 GGINVLINNAGVNHF-ALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQP--SAMVVNVGSTFGSIG---------- 145 (263)
T ss_pred CCCCEEEECCCCCCc-cccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC--CCEEEEecChhhCcC----------
Confidence 899999999998643 5677889999999999999999999999999997764 469999999887653
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.++...|+.+|+++..+++.++.++ .+.||+|++|+||+++|++......
T Consensus 146 -------------------------~~~~~~Y~~sK~a~~~~~~~l~~~~-~~~~i~v~~v~Pg~~~t~~~~~~~~---- 195 (263)
T PRK09072 146 -------------------------YPGYASYCASKFALRGFSEALRREL-ADTGVRVLYLAPRATRTAMNSEAVQ---- 195 (263)
T ss_pred -------------------------CCCccHHHHHHHHHHHHHHHHHHHh-cccCcEEEEEecCcccccchhhhcc----
Confidence 2466789999999999999999998 5679999999999999975421110
Q ss_pred hhhhhhHHhhhcCccchhhhhhhccc
Q 018819 323 LLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 323 ~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
...........+|+++|+.+++
T Consensus 196 ----~~~~~~~~~~~~~~~va~~i~~ 217 (263)
T PRK09072 196 ----ALNRALGNAMDDPEDVAAAVLQ 217 (263)
T ss_pred ----cccccccCCCCCHHHHHHHHHH
Confidence 0111112245788888887764
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-30 Score=234.73 Aligned_cols=229 Identities=20% Similarity=0.258 Sum_probs=177.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhcc--CCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM--AKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~--~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+++|+++||||++|||+++|+.|+++|+ +|++++|+.+..++..+++.. .+..+.++.||++|++++.++++++.+.
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 80 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGG-IVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEK 80 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999999995 899999998887777766632 2334667799999999999999999999
Q ss_pred CCCCcEEEEccccCCC--CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLP--TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~--~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (350)
++++|++|||||.... ...+.+.+.++|+..+++|+.+++.++++++|.|.+++ .++||++||+.+..+.. .
T Consensus 81 ~~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~~sS~~~~~~~~--~-- 154 (256)
T PRK09186 81 YGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQG--GGNLVNISSIYGVVAPK--F-- 154 (256)
T ss_pred cCCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcC--CceEEEEechhhhcccc--c--
Confidence 9999999999986422 24567889999999999999999999999999998765 46999999987764210 0
Q ss_pred CCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchh
Q 018819 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (350)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~ 319 (350)
...+..+......|++||++++.+++.++.++ .+.||++++|+||.+.|+.. ..
T Consensus 155 ---------------------~~~~~~~~~~~~~Y~~sK~a~~~l~~~la~e~-~~~~i~v~~i~Pg~~~~~~~----~~ 208 (256)
T PRK09186 155 ---------------------EIYEGTSMTSPVEYAAIKAGIIHLTKYLAKYF-KDSNIRVNCVSPGGILDNQP----EA 208 (256)
T ss_pred ---------------------hhccccccCCcchhHHHHHHHHHHHHHHHHHh-CcCCeEEEEEecccccCCCC----HH
Confidence 00000111233479999999999999999998 67799999999999987531 01
Q ss_pred hHHhhhhhhHH-hhhcCccchhhhhhhcccc
Q 018819 320 LFRLLFPPFQK-YITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 320 ~~~~~~~~~~~-~~~~~~~s~~~~a~~i~~~ 349 (350)
+. ..+.. ....++.+|+|+|+.++++
T Consensus 209 ~~----~~~~~~~~~~~~~~~~dva~~~~~l 235 (256)
T PRK09186 209 FL----NAYKKCCNGKGMLDPDDICGTLVFL 235 (256)
T ss_pred HH----HHHHhcCCccCCCCHHHhhhhHhhe
Confidence 10 11111 1234578999999988764
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.8e-31 Score=234.71 Aligned_cols=190 Identities=27% Similarity=0.278 Sum_probs=167.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|+++||||+|+||.+++++|+++|+ +|++++|+.+..++..+++. .+.++.++.||++|+++++++++++.+++
T Consensus 2 ~~~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~i~~~~ 79 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADRDAEAAERVAAAIA-AGGRAFARQGDVGSAEAVEALVDFVAARW 79 (252)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecCCHHHHHHHHHHHh-cCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 56889999999999999999999999995 89999999877766666665 45678999999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|++|||+|.... ..+.+.+.++|+.++++|+.+++++++.+++.|.+.+ .++||++||..+..+
T Consensus 80 ~~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~ii~~sS~~~~~~---------- 146 (252)
T PRK06138 80 GRLDVLVNNAGFGCG-GTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQG--GGSIVNTASQLALAG---------- 146 (252)
T ss_pred CCCCEEEECCCCCCC-CCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcC--CeEEEEECChhhccC----------
Confidence 999999999998644 5666788999999999999999999999999998765 469999999987653
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.++...|+.+|++++.+++.++.++ ...||++++|+||++.|++.
T Consensus 147 -------------------------~~~~~~Y~~sK~a~~~~~~~l~~~~-~~~~i~v~~v~pg~~~t~~~ 191 (252)
T PRK06138 147 -------------------------GRGRAAYVASKGAIASLTRAMALDH-ATDGIRVNAVAPGTIDTPYF 191 (252)
T ss_pred -------------------------CCCccHHHHHHHHHHHHHHHHHHHH-HhcCeEEEEEEECCccCcch
Confidence 2466789999999999999999998 56699999999999999864
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7e-31 Score=236.10 Aligned_cols=221 Identities=21% Similarity=0.243 Sum_probs=174.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
+++++++||||++|||.+++++|+++|+ +|++++|+....++..+++. ..+++||++|+++++++++++.+.++
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~-----~~~~~~D~~~~~~~~~~~~~~~~~~~ 78 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDIDPEAGKAAADEVG-----GLFVPTDVTDEDAVNALFDTAAETYG 78 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHcC-----CcEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 6789999999999999999999999995 89999998776666555543 25789999999999999999998889
Q ss_pred CCcEEEEccccCCC-CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 164 PLDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 164 ~id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
++|++|||||...+ ..++.+.+.+.|++.+++|+.+++++++.++|.|.+++ .|+||++||..+..+.
T Consensus 79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--~g~iv~~sS~~~~~g~--------- 147 (255)
T PRK06057 79 SVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQG--KGSIINTASFVAVMGS--------- 147 (255)
T ss_pred CCCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhC--CcEEEEEcchhhccCC---------
Confidence 99999999997532 23566778999999999999999999999999997654 4799999998776532
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch-hhH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-PLF 321 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~-~~~ 321 (350)
.+++..|+++|+++..+++.++.++ .+.||++++|+||+++|++...... ...
T Consensus 148 -------------------------~~~~~~Y~~sKaal~~~~~~l~~~~-~~~gi~v~~i~pg~v~t~~~~~~~~~~~~ 201 (255)
T PRK06057 148 -------------------------ATSQISYTASKGGVLAMSRELGVQF-ARQGIRVNALCPGPVNTPLLQELFAKDPE 201 (255)
T ss_pred -------------------------CCCCcchHHHHHHHHHHHHHHHHHH-HhhCcEEEEEeeCCcCCchhhhhccCCHH
Confidence 1355689999999999999999998 5669999999999999987532110 000
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhccc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
. ......+.....+.+|+|+++.+.+
T Consensus 202 ~-~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (255)
T PRK06057 202 R-AARRLVHVPMGRFAEPEEIAAAVAF 227 (255)
T ss_pred H-HHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 0 0011111122456889999988754
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.8e-31 Score=234.11 Aligned_cols=216 Identities=20% Similarity=0.209 Sum_probs=180.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
++|+++||||++|||+.++++|+++|+ +|++++|+.+..++..+++...+.++.++.||++|++++.++++.+.+.+++
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGC 83 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 457999999999999999999999995 9999999987777777766655667889999999999999999999999999
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
+|++|||||.... .++.+.+.++|+.++++|+.+++++++.+++.|.+++ .++||++||..+..+
T Consensus 84 id~lv~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~isS~~~~~~------------ 148 (241)
T PRK07454 84 PDVLINNAGMAYT-GPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARG--GGLIINVSSIAARNA------------ 148 (241)
T ss_pred CCEEEECCCccCC-CchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcC--CcEEEEEccHHhCcC------------
Confidence 9999999998644 5667788999999999999999999999999998764 479999999877532
Q ss_pred cccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhh
Q 018819 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLL 324 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~ 324 (350)
.+++..|+.+|++++.+++.++.++ .+.||++++|+||+++|++.......
T Consensus 149 -----------------------~~~~~~Y~~sK~~~~~~~~~~a~e~-~~~gi~v~~i~pg~i~t~~~~~~~~~----- 199 (241)
T PRK07454 149 -----------------------FPQWGAYCVSKAALAAFTKCLAEEE-RSHGIRVCTITLGAVNTPLWDTETVQ----- 199 (241)
T ss_pred -----------------------CCCccHHHHHHHHHHHHHHHHHHHh-hhhCCEEEEEecCcccCCcccccccc-----
Confidence 3566789999999999999999998 56799999999999999864321110
Q ss_pred hhhhHHhhhcCccchhhhhhhcccc
Q 018819 325 FPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 325 ~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..+ ......+++++|+.++++
T Consensus 200 -~~~---~~~~~~~~~~va~~~~~l 220 (241)
T PRK07454 200 -ADF---DRSAMLSPEQVAQTILHL 220 (241)
T ss_pred -ccc---ccccCCCHHHHHHHHHHH
Confidence 000 012357899999887653
|
|
| >KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.5e-31 Score=221.14 Aligned_cols=194 Identities=26% Similarity=0.316 Sum_probs=161.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHc-CCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc--CC
Q 018819 87 GSVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS--GR 163 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~-Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~--~g 163 (350)
++|+||||.+|||+.++++|.+. |-.+++.+.|+.+...+..+.......+++.+++|+++.+++.++++++.+- ..
T Consensus 4 ksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a~~~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~V~~iVg~~ 83 (249)
T KOG1611|consen 4 KSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKAATELALKSKSDSRVHIIQLDVTCDESIDNFVQEVEKIVGSD 83 (249)
T ss_pred ccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHhhHHHHHhhccCCceEEEEEecccHHHHHHHHHHHHhhcccC
Confidence 46999999999999999999875 5555666777777753333333334678999999999999999999999886 46
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCC---------CCCeEEEEeccCCCCCCC
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY---------PSKRLIIVGSITGNTNTL 234 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~---------~~g~iV~vSS~~~~~~~~ 234 (350)
++|++|||||+........+.+.+.|.+.+++|..|++.++|+|+|++++... ..+.|||+||..+-.+..
T Consensus 84 GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~~s~~~~ 163 (249)
T KOG1611|consen 84 GLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSAGSIGGF 163 (249)
T ss_pred CceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeeccccccCCC
Confidence 89999999999876666777788999999999999999999999999987542 124799999998765421
Q ss_pred CCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 235 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
...++.+|.+||+|++.|+++++.++ ++.+|-|.++|||||.|+|-
T Consensus 164 --------------------------------~~~~~~AYrmSKaAlN~f~ksls~dL-~~~~ilv~sihPGwV~TDMg 209 (249)
T KOG1611|consen 164 --------------------------------RPGGLSAYRMSKAALNMFAKSLSVDL-KDDHILVVSIHPGWVQTDMG 209 (249)
T ss_pred --------------------------------CCcchhhhHhhHHHHHHHHHHhhhhh-cCCcEEEEEecCCeEEcCCC
Confidence 12477899999999999999999999 67799999999999999864
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-30 Score=233.76 Aligned_cols=225 Identities=21% Similarity=0.199 Sum_probs=174.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEe-cChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~-r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
++++|||||++|||.+++++|+++|+ +|++.. |+.+..++..+.+...+.++.++.||++|.++++++++++.+.+++
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l~~~G~-~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLAAERGY-AVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGR 80 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-eEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHhCC
Confidence 46899999999999999999999996 677665 4555555565666555667889999999999999999999999999
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCC-CCCCeEEEEeccCCCCCCCCCCCCCCCC
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSD-YPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (350)
+|+||||||.......+.+.+.++|++++++|+.+++++++++++.|.++. ...|+||++||.++..+.
T Consensus 81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~---------- 150 (248)
T PRK06123 81 LDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGS---------- 150 (248)
T ss_pred CCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCCC----------
Confidence 999999999865445677889999999999999999999999999987542 113689999999877542
Q ss_pred ccccccccccCCCCCCCcccCCCCCCc-hhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 244 LGDLRGFAGGLNGLNSSSMIDGGDFDG-AKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
++ +..|+++|++++.+++.++.++ .++||++++|+||++.|++......+.
T Consensus 151 -------------------------~~~~~~Y~~sKaa~~~~~~~la~~~-~~~~i~v~~i~pg~v~~~~~~~~~~~~-- 202 (248)
T PRK06123 151 -------------------------PGEYIDYAASKGAIDTMTIGLAKEV-AAEGIRVNAVRPGVIYTEIHASGGEPG-- 202 (248)
T ss_pred -------------------------CCCccchHHHHHHHHHHHHHHHHHh-cccCeEEEEEecCcccCchhhccCCHH--
Confidence 22 3579999999999999999998 667999999999999998643211111
Q ss_pred hhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 323 LLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
...............+++++++.++++
T Consensus 203 ~~~~~~~~~p~~~~~~~~d~a~~~~~l 229 (248)
T PRK06123 203 RVDRVKAGIPMGRGGTAEEVARAILWL 229 (248)
T ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 000000011123345788888877653
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.4e-31 Score=236.13 Aligned_cols=210 Identities=14% Similarity=0.136 Sum_probs=167.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhH-HHHHHHHhccCC-CceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK-AERAAKSAGMAK-ENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~-~~~~~~~l~~~~-~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.++++|||||++|||+++|++|+++|..+|++++|+.+. .+++.+++...+ .++.+++||++|.++++++++++.+ +
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~-~ 85 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFA-G 85 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHh-c
Confidence 467999999999999999999999963599999998775 777777665544 3789999999999999999999886 4
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|++|||+|...+.... ..+.++..+++++|+.+++++++.++|.|.+++ .++||++||..+..+
T Consensus 86 g~id~li~~ag~~~~~~~~-~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~--~~~iv~isS~~g~~~---------- 152 (253)
T PRK07904 86 GDVDVAIVAFGLLGDAEEL-WQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQG--FGQIIAMSSVAGERV---------- 152 (253)
T ss_pred CCCCEEEEeeecCCchhhc-ccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcC--CceEEEEechhhcCC----------
Confidence 8999999999986431111 123455667899999999999999999998765 479999999987532
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.++...|++||+++..|++.++.|+ .+.||++++|+||+++|++......
T Consensus 153 -------------------------~~~~~~Y~~sKaa~~~~~~~l~~el-~~~~i~v~~v~Pg~v~t~~~~~~~~---- 202 (253)
T PRK07904 153 -------------------------RRSNFVYGSTKAGLDGFYLGLGEAL-REYGVRVLVVRPGQVRTRMSAHAKE---- 202 (253)
T ss_pred -------------------------CCCCcchHHHHHHHHHHHHHHHHHH-hhcCCEEEEEeeCceecchhccCCC----
Confidence 2455689999999999999999998 6779999999999999986532110
Q ss_pred hhhhhhHHhhhcCccchhhhhhhccc
Q 018819 323 LLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 323 ~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
. ....+++++|+.+++
T Consensus 203 ---~-------~~~~~~~~~A~~i~~ 218 (253)
T PRK07904 203 ---A-------PLTVDKEDVAKLAVT 218 (253)
T ss_pred ---C-------CCCCCHHHHHHHHHH
Confidence 0 124688888887764
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-30 Score=234.35 Aligned_cols=224 Identities=21% Similarity=0.197 Sum_probs=176.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccC-C-CceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-K-ENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~-~-~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
+|++|||||+++||.+++++|+++|+ +|++++|+....+...+++... + .++.++.||++|.+++.++++++.+.++
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 57999999999999999999999995 8999999877776666555432 2 4688999999999999999999999999
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCC
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (350)
++|++|||||.... ..+.+.+.++|++.+++|+.+++++.+++.+.|.+++. .++||++||..+..+.
T Consensus 81 ~id~vv~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~-~~~iv~~ss~~~~~~~---------- 148 (259)
T PRK12384 81 RVDLLVYNAGIAKA-AFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGI-QGRIIQINSKSGKVGS---------- 148 (259)
T ss_pred CCCEEEECCCcCCC-CCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCC-CcEEEEecCcccccCC----------
Confidence 99999999998654 66778899999999999999999999999999976531 3699999998776432
Q ss_pred ccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcc-cCCcccccchhhHH
Q 018819 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI-ATTGLFREHIPLFR 322 (350)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v-~t~~~~~~~~~~~~ 322 (350)
+....|++||++++.++++++.++ .+.||+|++|+||.+ .|++. ....+...
T Consensus 149 -------------------------~~~~~Y~~sKaa~~~l~~~la~e~-~~~gi~v~~v~pg~~~~~~~~-~~~~~~~~ 201 (259)
T PRK12384 149 -------------------------KHNSGYSAAKFGGVGLTQSLALDL-AEYGITVHSLMLGNLLKSPMF-QSLLPQYA 201 (259)
T ss_pred -------------------------CCCchhHHHHHHHHHHHHHHHHHH-HHcCcEEEEEecCCcccchhh-hhhhHHHH
Confidence 456789999999999999999998 567999999999976 55443 22222110
Q ss_pred --hh--hhhh-----HHhhhcCccchhhhhhhcccc
Q 018819 323 --LL--FPPF-----QKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 --~~--~~~~-----~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.. .... ......++..++|+++.++.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~l 237 (259)
T PRK12384 202 KKLGIKPDEVEQYYIDKVPLKRGCDYQDVLNMLLFY 237 (259)
T ss_pred HhcCCChHHHHHHHHHhCcccCCCCHHHHHHHHHHH
Confidence 00 0011 111235567899998887643
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.7e-31 Score=241.50 Aligned_cols=204 Identities=35% Similarity=0.493 Sum_probs=163.2
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhcc--CCCceEEEEccCCCHHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM--AKENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~--~~~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
+++++|++|||||++|||+++|+.|+++|+ +|++++|+.+..++..+++.. .+.++.++.+|++|.++++++++++.
T Consensus 12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 90 (306)
T PRK06197 12 PDQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALR 90 (306)
T ss_pred ccCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999999995 899999998777666555542 24568899999999999999999999
Q ss_pred HcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCC
Q 018819 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (350)
+.++++|+||||||+.... .+.+.++|+..+++|+.|++.+++.++|.|.+.+ .++||++||..+.... ..+
T Consensus 91 ~~~~~iD~li~nAg~~~~~---~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~--~~~iV~vSS~~~~~~~---~~~ 162 (306)
T PRK06197 91 AAYPRIDLLINNAGVMYTP---KQTTADGFELQFGTNHLGHFALTGLLLDRLLPVP--GSRVVTVSSGGHRIRA---AIH 162 (306)
T ss_pred hhCCCCCEEEECCccccCC---CccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCC--CCEEEEECCHHHhccC---CCC
Confidence 9999999999999986432 3467788999999999999999999999998764 4699999998764311 000
Q ss_pred CCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEe--eCCcccCCccc
Q 018819 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASL--YPGCIATTGLF 314 (350)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v--~PG~v~t~~~~ 314 (350)
..+ .....++++...|++||++++.+++.+++++ .+.|++++++ +||+|+|++..
T Consensus 163 ----~~~---------------~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~l-~~~~i~v~~v~~~PG~v~T~~~~ 219 (306)
T PRK06197 163 ----FDD---------------LQWERRYNRVAAYGQSKLANLLFTYELQRRL-AAAGATTIAVAAHPGVSNTELAR 219 (306)
T ss_pred ----ccc---------------cCcccCCCcHHHHHHHHHHHHHHHHHHHHHh-hcCCCCeEEEEeCCCcccCcccc
Confidence 000 0001124567899999999999999999998 5667776655 79999998653
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-30 Score=234.20 Aligned_cols=186 Identities=24% Similarity=0.214 Sum_probs=164.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc-CCCC
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS-GRPL 165 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~-~g~i 165 (350)
|++|||||++|||++++++|+++|+ +|++++|+.+..+++...+. +.++.+++||++|.+++.++++.+.+. ++++
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~i 78 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELG--AGNAWTGALDVTDRAAWDAALADFAAATGGRL 78 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 5899999999999999999999995 89999999887777766654 457899999999999999999988776 7899
Q ss_pred cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcc
Q 018819 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (350)
|+||||||.... ..+.+.+.++++.++++|+.+++++++++.+.|.+.+ .++||++||..+..+.
T Consensus 79 d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~~~------------ 143 (260)
T PRK08267 79 DVLFNNAGILRG-GPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATP--GARVINTSSASAIYGQ------------ 143 (260)
T ss_pred CEEEECCCCCCC-CccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CCEEEEeCchhhCcCC------------
Confidence 999999998654 6677889999999999999999999999999998765 4799999998887542
Q ss_pred ccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccc
Q 018819 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~ 314 (350)
++...|+.||++++.++++++.++ .+.||++++|+||+++|++..
T Consensus 144 -----------------------~~~~~Y~~sKaa~~~~~~~l~~~~-~~~~i~v~~i~pg~~~t~~~~ 188 (260)
T PRK08267 144 -----------------------PGLAVYSATKFAVRGLTEALDLEW-RRHGIRVADVMPLFVDTAMLD 188 (260)
T ss_pred -----------------------CCchhhHHHHHHHHHHHHHHHHHh-cccCcEEEEEecCCcCCcccc
Confidence 466789999999999999999998 567999999999999998653
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-30 Score=234.09 Aligned_cols=226 Identities=21% Similarity=0.277 Sum_probs=182.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|+++||||++|||+++++.|+++|+ +|++++|+.++++++..++...+.++.++.+|+++.++++++++++.+.+
T Consensus 6 ~~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (258)
T PRK06949 6 NLEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEA 84 (258)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 46789999999999999999999999995 89999999888777777665555678899999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCC------CCCeEEEEeccCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY------PSKRLIIVGSITGNTNTLAG 236 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~------~~g~iV~vSS~~~~~~~~~~ 236 (350)
+++|++|||||.... ..+.+.+.++|+.++++|+.+++++++++.+.|.++.. ..|+||++||..+..+
T Consensus 85 ~~~d~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~---- 159 (258)
T PRK06949 85 GTIDILVNNSGVSTT-QKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLRV---- 159 (258)
T ss_pred CCCCEEEECCCCCCC-CCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccCC----
Confidence 999999999998644 56667789999999999999999999999999875531 1369999999877532
Q ss_pred CCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccccc
Q 018819 237 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 316 (350)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~ 316 (350)
.+....|+++|++++.+++.++.++ .+.||+|++|+||+|+|++....
T Consensus 160 -------------------------------~~~~~~Y~~sK~a~~~~~~~la~~~-~~~~i~v~~v~pG~v~t~~~~~~ 207 (258)
T PRK06949 160 -------------------------------LPQIGLYCMSKAAVVHMTRAMALEW-GRHGINVNAICPGYIDTEINHHH 207 (258)
T ss_pred -------------------------------CCCccHHHHHHHHHHHHHHHHHHHH-HhcCeEEEEEeeCCCcCCcchhc
Confidence 2456789999999999999999998 56799999999999999865321
Q ss_pred chhhHHhhhhhhHHh-hhcCccchhhhhhhcccc
Q 018819 317 HIPLFRLLFPPFQKY-ITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 317 ~~~~~~~~~~~~~~~-~~~~~~s~~~~a~~i~~~ 349 (350)
... ... ....+. ......+|+|+++.+.++
T Consensus 208 ~~~--~~~-~~~~~~~~~~~~~~p~~~~~~~~~l 238 (258)
T PRK06949 208 WET--EQG-QKLVSMLPRKRVGKPEDLDGLLLLL 238 (258)
T ss_pred cCh--HHH-HHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 110 100 111111 124567889988887664
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.3e-31 Score=235.59 Aligned_cols=224 Identities=16% Similarity=0.185 Sum_probs=171.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEec----ChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR----DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 158 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r----~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~ 158 (350)
.+++|++|||||++|||+++|+.|+++|+ +|+++.+ +.+..++..+++...+.++.++++|++|+++++++++++
T Consensus 5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~-~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~ 83 (257)
T PRK12744 5 SLKGKVVLIAGGAKNLGGLIARDLAAQGA-KAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDA 83 (257)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCC-cEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHH
Confidence 46789999999999999999999999996 6544443 234445555555555667889999999999999999999
Q ss_pred HHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEE-eccCCCCCCCCCC
Q 018819 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIV-GSITGNTNTLAGN 237 (350)
Q Consensus 159 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~v-SS~~~~~~~~~~~ 237 (350)
.+.++++|++|||||.... .++.+.+.++|++++++|+.+++++++++.|.|.+. |+++++ ||..+..
T Consensus 84 ~~~~~~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~----~~iv~~~ss~~~~~------ 152 (257)
T PRK12744 84 KAAFGRPDIAINTVGKVLK-KPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDN----GKIVTLVTSLLGAF------ 152 (257)
T ss_pred HHhhCCCCEEEECCcccCC-CCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccC----CCEEEEecchhccc------
Confidence 9989999999999998644 567788999999999999999999999999998653 477776 5544431
Q ss_pred CCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccc
Q 018819 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317 (350)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~ 317 (350)
.+.+..|++||++++.++++++.|+ .+.||+|++|+||++.|++.....
T Consensus 153 ------------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~~i~v~~v~pg~v~t~~~~~~~ 201 (257)
T PRK12744 153 ------------------------------TPFYSAYAGSKAPVEHFTRAASKEF-GARGISVTAVGPGPMDTPFFYPQE 201 (257)
T ss_pred ------------------------------CCCcccchhhHHHHHHHHHHHHHHh-CcCceEEEEEecCccccchhcccc
Confidence 2456789999999999999999999 567999999999999998653321
Q ss_pred hhhHHhh-hh-h-hHHhhhcCccchhhhhhhcccc
Q 018819 318 IPLFRLL-FP-P-FQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 318 ~~~~~~~-~~-~-~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.+-.... .. . .......++..|+|+++.+.++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l 236 (257)
T PRK12744 202 GAEAVAYHKTAAALSPFSKTGLTDIEDIVPFIRFL 236 (257)
T ss_pred ccchhhcccccccccccccCCCCCHHHHHHHHHHh
Confidence 1110000 00 0 0001112567899998887654
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-30 Score=232.54 Aligned_cols=194 Identities=25% Similarity=0.261 Sum_probs=165.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccC-CCceEEEEccCCC--HHHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-KENYTIMHLDLAS--LDSVRQFVDTFR 159 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~-~~~v~~~~~Dvs~--~~~v~~~~~~~~ 159 (350)
.+++|+++||||++|||++++++|+++|+ +|++++|+.+..++..+++... +..+.++.+|+++ .+++.++++++.
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~ 81 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGA-TVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIA 81 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHH
Confidence 46889999999999999999999999995 8999999988877777766433 3457788999986 568899999988
Q ss_pred HcC-CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCC
Q 018819 160 RSG-RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (350)
Q Consensus 160 ~~~-g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (350)
+.+ +++|++|||||......++.+.+.++|++.+++|+.|+++++++++|.|.+.+ .++||++||..+..+
T Consensus 82 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~--~~~iv~~ss~~~~~~------ 153 (239)
T PRK08703 82 EATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSP--DASVIFVGESHGETP------ 153 (239)
T ss_pred HHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCC--CCEEEEEeccccccC------
Confidence 877 78999999999865445677889999999999999999999999999987754 479999999877642
Q ss_pred CCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccc
Q 018819 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (350)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~ 314 (350)
.++...|++||++++.+++.++.|+....+|+|++|+||+|+|++..
T Consensus 154 -----------------------------~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~i~v~~v~pG~v~t~~~~ 200 (239)
T PRK08703 154 -----------------------------KAYWGGFGASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQRI 200 (239)
T ss_pred -----------------------------CCCccchHHhHHHHHHHHHHHHHHhccCCCeEEEEEecCcccCcccc
Confidence 34667899999999999999999984333799999999999999753
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-30 Score=233.58 Aligned_cols=227 Identities=21% Similarity=0.244 Sum_probs=179.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
++++|++|||||++|||.++|++|+++|+ +|++++|+.++.+...+++...+.++.++.||++|+++++++++++.+.+
T Consensus 9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 9 DLSGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999995 89999999887777777766556678899999999999999999999988
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHH-HhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDD-LKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~-~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
+++|++|||||.... .++.+.+.+.|++++++|+.+++++++++.+. |.+++ .++||++||..+..+..+
T Consensus 88 ~~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~--~~~~v~~sS~~~~~~~~~------ 158 (259)
T PRK08213 88 GHVDILVNNAGATWG-APAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRG--YGRIINVASVAGLGGNPP------ 158 (259)
T ss_pred CCCCEEEECCCCCCC-CChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcC--CeEEEEECChhhccCCCc------
Confidence 999999999998543 55667889999999999999999999999998 65543 469999999877643200
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
..++...|+++|++++.++++++.++ .+.||++++|+||+++|++... ..+
T Consensus 159 -------------------------~~~~~~~Y~~sKa~~~~~~~~~a~~~-~~~gi~v~~v~Pg~~~t~~~~~-~~~-- 209 (259)
T PRK08213 159 -------------------------EVMDTIAYNTSKGAVINFTRALAAEW-GPHGIRVNAIAPGFFPTKMTRG-TLE-- 209 (259)
T ss_pred -------------------------cccCcchHHHHHHHHHHHHHHHHHHh-cccCEEEEEEecCcCCCcchhh-hhH--
Confidence 01345789999999999999999998 5679999999999999985422 111
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhccc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
..............+.+++++++.+.+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~va~~~~~ 236 (259)
T PRK08213 210 RLGEDLLAHTPLGRLGDDEDLKGAALL 236 (259)
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 111111111112345578888876654
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-30 Score=236.11 Aligned_cols=216 Identities=23% Similarity=0.234 Sum_probs=173.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
++++++||||+||||++++++|+++|+ +|++.+|+.+..+. ..++.+++||++|+++++++++.+.+.+++
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~--------~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 73 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGY-RVFGTSRNPARAAP--------IPGVELLELDVTDDASVQAAVDEVIARAGR 73 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCChhhccc--------cCCCeeEEeecCCHHHHHHHHHHHHHhCCC
Confidence 467999999999999999999999995 89999998654321 135788999999999999999999999999
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
+|+||||||.... ..+.+.+.+++++++++|+.|++++++.++|.|.+++ .|+||++||..+..+
T Consensus 74 ~d~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~--~~~iv~isS~~~~~~------------ 138 (270)
T PRK06179 74 IDVLVNNAGVGLA-GAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQG--SGRIINISSVLGFLP------------ 138 (270)
T ss_pred CCEEEECCCCCCC-cCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CceEEEECCccccCC------------
Confidence 9999999998644 6677889999999999999999999999999998765 479999999887643
Q ss_pred cccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch---hhH
Q 018819 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI---PLF 321 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~---~~~ 321 (350)
.+....|++||++++.+++.++.|+ ++.||++++|+||+++|++...... ++.
T Consensus 139 -----------------------~~~~~~Y~~sK~a~~~~~~~l~~el-~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~ 194 (270)
T PRK06179 139 -----------------------APYMALYAASKHAVEGYSESLDHEV-RQFGIRVSLVEPAYTKTNFDANAPEPDSPLA 194 (270)
T ss_pred -----------------------CCCccHHHHHHHHHHHHHHHHHHHH-hhhCcEEEEEeCCCcccccccccCCCCCcch
Confidence 3566789999999999999999998 5679999999999999986532111 110
Q ss_pred --H---hhhhhhHHhhhcCccchhhhhhhccc
Q 018819 322 --R---LLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 322 --~---~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
. ...............+|+++|+.+++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~ 226 (270)
T PRK06179 195 EYDRERAVVSKAVAKAVKKADAPEVVADTVVK 226 (270)
T ss_pred hhHHHHHHHHHHHHhccccCCCHHHHHHHHHH
Confidence 0 00011111112345688888888765
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-30 Score=231.06 Aligned_cols=216 Identities=19% Similarity=0.246 Sum_probs=180.5
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++++++||||++|||++++++|+++|+ +|++++|+.+..++..+++...+.++.++.+|++++++++++++++.+++
T Consensus 4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (239)
T PRK07666 4 SLQGKNALITGAGRGIGRAVAIALAKEGV-NVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNEL 82 (239)
T ss_pred cCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 35788999999999999999999999995 99999999877777776666556688999999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|++|||+|.... ..+.+.+.++|++.+++|+.+++++++++.+.+.+++ .+++|++||..+..+
T Consensus 83 ~~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~ss~~~~~~---------- 149 (239)
T PRK07666 83 GSIDILINNAGISKF-GKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQ--SGDIINISSTAGQKG---------- 149 (239)
T ss_pred CCccEEEEcCccccC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CcEEEEEcchhhccC----------
Confidence 999999999998643 5566788999999999999999999999999987765 469999999887643
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.++...|+.+|+++..+++.++.++ .+.||++++|+||++.|++......+..
T Consensus 150 -------------------------~~~~~~Y~~sK~a~~~~~~~~a~e~-~~~gi~v~~v~pg~v~t~~~~~~~~~~~- 202 (239)
T PRK07666 150 -------------------------AAVTSAYSASKFGVLGLTESLMQEV-RKHNIRVTALTPSTVATDMAVDLGLTDG- 202 (239)
T ss_pred -------------------------CCCCcchHHHHHHHHHHHHHHHHHh-hccCcEEEEEecCcccCcchhhcccccc-
Confidence 2456789999999999999999998 5679999999999999986432211100
Q ss_pred hhhhhhHHhhhcCccchhhhhhhccc
Q 018819 323 LLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 323 ~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
....+.+++++++.++.
T Consensus 203 ---------~~~~~~~~~~~a~~~~~ 219 (239)
T PRK07666 203 ---------NPDKVMQPEDLAEFIVA 219 (239)
T ss_pred ---------CCCCCCCHHHHHHHHHH
Confidence 01235788888887764
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-30 Score=234.24 Aligned_cols=227 Identities=18% Similarity=0.203 Sum_probs=183.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|++|||||+++||+++++.|+++|+ +|++++|+.+..++..+++...+.++.++++|++|.++++++++.+.+.+
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGA-AVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERF 82 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 46789999999999999999999999995 89999999888888877776667788899999999999999999998888
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHH-hcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDL-KQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~-~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
+++|++|||||.... ..+.+.+.++|+..+++|+.+++.+++.+++.+ .+.+ .++||++||..+..+
T Consensus 83 ~~~d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~--~~~iv~~ss~~~~~~--------- 150 (262)
T PRK13394 83 GSVDILVSNAGIQIV-NPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDR--GGVVIYMGSVHSHEA--------- 150 (262)
T ss_pred CCCCEEEECCccCCC-CchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcC--CcEEEEEcchhhcCC---------
Confidence 999999999998643 566677899999999999999999999999999 5543 479999999876542
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.++...|+++|+++..+++.++.++ .+.+|++++|+||+++|++.........
T Consensus 151 --------------------------~~~~~~y~~sk~a~~~~~~~la~~~-~~~~i~v~~v~pg~v~~~~~~~~~~~~~ 203 (262)
T PRK13394 151 --------------------------SPLKSAYVTAKHGLLGLARVLAKEG-AKHNVRSHVVCPGFVRTPLVDKQIPEQA 203 (262)
T ss_pred --------------------------CCCCcccHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCcccchhhhhhhHhhh
Confidence 2456789999999999999999998 5679999999999999986532111100
Q ss_pred H-hh--hhhhH-Hh-----hhcCccchhhhhhhcccc
Q 018819 322 R-LL--FPPFQ-KY-----ITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~-~~--~~~~~-~~-----~~~~~~s~~~~a~~i~~~ 349 (350)
. .. ..... +. ....+++++|+++.++.+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~a~~~l 240 (262)
T PRK13394 204 KELGISEEEVVKKVMLGKTVDGVFTTVEDVAQTVLFL 240 (262)
T ss_pred hccCCChHHHHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 0 00 00111 11 124578999999987653
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-30 Score=232.56 Aligned_cols=217 Identities=19% Similarity=0.227 Sum_probs=173.9
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCcEEEEEecC-hhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 89 VIITGASSGLGLATAKALAETGKWHIIMACRD-FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 89 ~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~-~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
++||||++|||+++|++|+++|+ +|++++|. .+..+...+++...+.++.++.+|++|.++++++++++.+.++++|+
T Consensus 1 vlItGas~giG~~~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~~ 79 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGF-EICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAEHGAYYG 79 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 58999999999999999999996 77777654 45566666666666678999999999999999999999888999999
Q ss_pred EEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHH-HHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccc
Q 018819 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL-DDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (350)
Q Consensus 168 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~-~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (350)
+|||+|+... ..+.+.+.++|+.++++|+.++++++++++ |.+.+++ .|+||++||.++..+
T Consensus 80 li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~~iv~vsS~~~~~~-------------- 142 (239)
T TIGR01831 80 VVLNAGITRD-AAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQ--GGRIITLASVSGVMG-------------- 142 (239)
T ss_pred EEECCCCCCC-CchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcC--CeEEEEEcchhhccC--------------
Confidence 9999998654 566778999999999999999999999876 4444333 479999999988754
Q ss_pred cccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhhhh
Q 018819 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFP 326 (350)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~ 326 (350)
.+++..|+++|+++..++++++.++ .+.||++++|+||+++|++.... .+... .
T Consensus 143 ---------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~-~~~~~---~ 196 (239)
T TIGR01831 143 ---------------------NRGQVNYSAAKAGLIGATKALAVEL-AKRKITVNCIAPGLIDTEMLAEV-EHDLD---E 196 (239)
T ss_pred ---------------------CCCCcchHHHHHHHHHHHHHHHHHH-hHhCeEEEEEEEccCccccchhh-hHHHH---H
Confidence 2567789999999999999999999 56799999999999999875321 11100 0
Q ss_pred hhHHhhhcCccchhhhhhhcccc
Q 018819 327 PFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 327 ~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
........++.+|+|+++.++++
T Consensus 197 ~~~~~~~~~~~~~~~va~~~~~l 219 (239)
T TIGR01831 197 ALKTVPMNRMGQPAEVASLAGFL 219 (239)
T ss_pred HHhcCCCCCCCCHHHHHHHHHHH
Confidence 11111224567999999988765
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-30 Score=230.52 Aligned_cols=189 Identities=21% Similarity=0.247 Sum_probs=164.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccC--CCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~--~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
+|+++||||++|||++++++|+++|+ +|++.+|+.++.++..+.+... +.++.+++||++|+++++++++++.+.++
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 57999999999999999999999995 8999999988777766665432 56789999999999999999999999999
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCC
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (350)
++|++|||||+... ..+.+.+.+.+++.+++|+.+++++++.+.+.|.+.+ .++||++||..+..+.
T Consensus 81 ~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~~sS~~~~~~~---------- 147 (248)
T PRK08251 81 GLDRVIVNAGIGKG-ARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQG--SGHLVLISSVSAVRGL---------- 147 (248)
T ss_pred CCCEEEECCCcCCC-CCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCeEEEEeccccccCC----------
Confidence 99999999998644 5666778899999999999999999999999987765 4699999998876542
Q ss_pred ccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
......|+.||++++.+++.++.++ ...||++++|+||+++|++.
T Consensus 148 ------------------------~~~~~~Y~~sK~a~~~~~~~l~~~~-~~~~i~v~~v~pg~v~t~~~ 192 (248)
T PRK08251 148 ------------------------PGVKAAYAASKAGVASLGEGLRAEL-AKTPIKVSTIEPGYIRSEMN 192 (248)
T ss_pred ------------------------CCCcccHHHHHHHHHHHHHHHHHHh-cccCcEEEEEecCcCcchhh
Confidence 1135689999999999999999998 56799999999999999865
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-30 Score=232.58 Aligned_cols=229 Identities=21% Similarity=0.199 Sum_probs=181.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|+++||||++|||+.++++|+++|+.+|++++|+.+......+++...+.++.++.+|+++++++.++++.+.+.+
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAF 82 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 46889999999999999999999999997449999998777766666665566778899999999999999999999888
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|++|||+|.... ..+.+.+.++|+.++++|+.+++++++++++.|.+++. .|+||++||..+..+
T Consensus 83 g~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~g~iv~~ss~~~~~~---------- 150 (260)
T PRK06198 83 GRLDALVNAAGLTDR-GTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKA-EGTIVNIGSMSAHGG---------- 150 (260)
T ss_pred CCCCEEEECCCcCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CCEEEEECCcccccC----------
Confidence 999999999998643 56667899999999999999999999999999876532 369999999887643
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccc--cchh-
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR--EHIP- 319 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~--~~~~- 319 (350)
.++...|+.+|++++.++++++.++ ...+|++++|+||++.|++... ....
T Consensus 151 -------------------------~~~~~~Y~~sK~a~~~~~~~~a~e~-~~~~i~v~~i~pg~~~t~~~~~~~~~~~~ 204 (260)
T PRK06198 151 -------------------------QPFLAAYCASKGALATLTRNAAYAL-LRNRIRVNGLNIGWMATEGEDRIQREFHG 204 (260)
T ss_pred -------------------------CCCcchhHHHHHHHHHHHHHHHHHh-cccCeEEEEEeeccccCcchhhhhhhccC
Confidence 2456789999999999999999998 5679999999999999986311 0000
Q ss_pred -hHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 320 -LFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 320 -~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
...+............+.+++++++.++++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l 235 (260)
T PRK06198 205 APDDWLEKAAATQPFGRLLDPDEVARAVAFL 235 (260)
T ss_pred CChHHHHHHhccCCccCCcCHHHHHHHHHHH
Confidence 000000000011124467899999888764
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=231.73 Aligned_cols=226 Identities=20% Similarity=0.171 Sum_probs=181.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
++++++|||||+++||++++++|+++|+ +|++++|+.+..+++.+++...+.++.++.+|++|.++++++++.+.+.++
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 79 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALG 79 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4678999999999999999999999995 899999998777777766665566789999999999999999999999899
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCC
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (350)
++|++|||+|.... ..+.+.+.++|++.+++|+.+++++++.+.+.|.+.+ .++||++||..+..+
T Consensus 80 ~~d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~ii~iss~~~~~~----------- 145 (250)
T TIGR03206 80 PVDVLVNNAGWDKF-GPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERG--AGRIVNIASDAARVG----------- 145 (250)
T ss_pred CCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CeEEEEECchhhccC-----------
Confidence 99999999998543 5666788999999999999999999999999997764 469999999887643
Q ss_pred ccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh---
Q 018819 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL--- 320 (350)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~--- 320 (350)
.++...|+.+|++++.+++.++.++ .+.||++++++||+++|++........
T Consensus 146 ------------------------~~~~~~Y~~sK~a~~~~~~~la~~~-~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~ 200 (250)
T TIGR03206 146 ------------------------SSGEAVYAACKGGLVAFSKTMAREH-ARHGITVNVVCPGPTDTALLDDICGGAENP 200 (250)
T ss_pred ------------------------CCCCchHHHHHHHHHHHHHHHHHHH-hHhCcEEEEEecCcccchhHHhhhhccCCh
Confidence 2456789999999999999999998 556999999999999998653211000
Q ss_pred HHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 ~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.+...............+++|+|+.+..+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~dva~~~~~l 229 (250)
T TIGR03206 201 EKLREAFTRAIPLGRLGQPDDLPGAILFF 229 (250)
T ss_pred HHHHHHHHhcCCccCCcCHHHHHHHHHHH
Confidence 01111111111223467899999887653
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=230.01 Aligned_cols=221 Identities=20% Similarity=0.204 Sum_probs=176.4
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+++++++++||||++|||++++++|+++|+ .|++.+|+.++.++....+ +.++.++.+|++|.++++++++++.+.
T Consensus 2 ~~~~~~~vlItGa~g~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (245)
T PRK12936 2 FDLSGRKALVTGASGGIGEEIARLLHAQGA-IVGLHGTRVEKLEALAAEL---GERVKIFPANLSDRDEVKALGQKAEAD 77 (245)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHh---CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 356789999999999999999999999995 8888888877766655544 346788999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|++|||||...+ .++.+.+.++|+.++++|+.+++++++++.+.+.+++ .++||++||..+..+.
T Consensus 78 ~~~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~~~-------- 146 (245)
T PRK12936 78 LEGVDILVNNAGITKD-GLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRR--YGRIINITSVVGVTGN-------- 146 (245)
T ss_pred cCCCCEEEECCCCCCC-CccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhC--CCEEEEECCHHhCcCC--------
Confidence 9999999999998654 5666788999999999999999999999998876654 4799999998877542
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
++...|+.+|+++..+++.++.++ ...|+++++|+||+++|++... ..+..
T Consensus 147 ---------------------------~~~~~Y~~sk~a~~~~~~~la~~~-~~~~i~v~~i~pg~~~t~~~~~-~~~~~ 197 (245)
T PRK12936 147 ---------------------------PGQANYCASKAGMIGFSKSLAQEI-ATRNVTVNCVAPGFIESAMTGK-LNDKQ 197 (245)
T ss_pred ---------------------------CCCcchHHHHHHHHHHHHHHHHHh-hHhCeEEEEEEECcCcCchhcc-cChHH
Confidence 456789999999999999999998 5679999999999999976422 11111
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhccc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
+. .........++.+|+++++.+.+
T Consensus 198 ~~--~~~~~~~~~~~~~~~~ia~~~~~ 222 (245)
T PRK12936 198 KE--AIMGAIPMKRMGTGAEVASAVAY 222 (245)
T ss_pred HH--HHhcCCCCCCCcCHHHHHHHHHH
Confidence 10 00001112345678888887754
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-30 Score=233.96 Aligned_cols=226 Identities=16% Similarity=0.105 Sum_probs=178.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccC--CCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~--~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
.+++|++|||||+||||.+++++|+++|+ +|++++|+.+..+...+++... +.++.++.||++|+++++++++++.+
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATA 82 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999999995 8999999877766666655432 35788999999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
+++++|++|||||......++.+.+.++|+.++++|+.+++++++++.+.|.+.+ .|+||++||..+..+
T Consensus 83 ~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~g~iv~~sS~~~~~~-------- 152 (276)
T PRK05875 83 WHGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGG--GGSFVGISSIAASNT-------- 152 (276)
T ss_pred HcCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEechhhcCC--------
Confidence 9999999999999764445666788999999999999999999999999987654 479999999877532
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~ 320 (350)
.++...|+++|++++.+++.++.++ ...+|++++|+||+++|++..... ..
T Consensus 153 ---------------------------~~~~~~Y~~sK~a~~~~~~~~~~~~-~~~~i~v~~i~Pg~v~t~~~~~~~-~~ 203 (276)
T PRK05875 153 ---------------------------HRWFGAYGVTKSAVDHLMKLAADEL-GPSWVRVNSIRPGLIRTDLVAPIT-ES 203 (276)
T ss_pred ---------------------------CCCCcchHHHHHHHHHHHHHHHHHh-cccCeEEEEEecCccCCccccccc-cC
Confidence 2456789999999999999999998 567999999999999998653211 10
Q ss_pred HHhhhhhhHHhhhcCccchhhhhhhccc
Q 018819 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 321 ~~~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
...............+.+++|+++.+.+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~dva~~~~~ 231 (276)
T PRK05875 204 PELSADYRACTPLPRVGEVEDVANLAMF 231 (276)
T ss_pred HHHHHHHHcCCCCCCCcCHHHHHHHHHH
Confidence 0000000001112345678888887654
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=231.39 Aligned_cols=226 Identities=21% Similarity=0.224 Sum_probs=184.3
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
+++|++|||||+++||++++++|+++| ++|++++|+.+..++..+++...+.++.++.||++|+++++++++++.+.++
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEG-AKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFG 80 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 467899999999999999999999999 5999999998887777777766667899999999999999999999999999
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCC
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (350)
++|++|||||.... ..+.+.+.++++..+++|+.+++++++.+++.|.+++ .++||++||..+..+
T Consensus 81 ~~d~vi~~a~~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~iss~~~~~~----------- 146 (258)
T PRK12429 81 GVDILVNNAGIQHV-APIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQG--GGRIINMASVHGLVG----------- 146 (258)
T ss_pred CCCEEEECCCCCCC-CChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcC--CeEEEEEcchhhccC-----------
Confidence 99999999998654 5667788999999999999999999999999998765 469999999887753
Q ss_pred ccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch-----
Q 018819 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI----- 318 (350)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~----- 318 (350)
.++...|+++|+++..+++.++.++ .+.||++++++||++.|++......
T Consensus 147 ------------------------~~~~~~y~~~k~a~~~~~~~l~~~~-~~~~i~v~~~~pg~v~~~~~~~~~~~~~~~ 201 (258)
T PRK12429 147 ------------------------SAGKAAYVSAKHGLIGLTKVVALEG-ATHGVTVNAICPGYVDTPLVRKQIPDLAKE 201 (258)
T ss_pred ------------------------CCCcchhHHHHHHHHHHHHHHHHHh-cccCeEEEEEecCCCcchhhhhhhhhhccc
Confidence 3567899999999999999999998 5679999999999999986532111
Q ss_pred ---hhHHhhhhhhHH-hhhcCccchhhhhhhcccc
Q 018819 319 ---PLFRLLFPPFQK-YITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ---~~~~~~~~~~~~-~~~~~~~s~~~~a~~i~~~ 349 (350)
+........+.. .....+++++++|+.++.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~l 236 (258)
T PRK12429 202 RGISEEEVLEDVLLPLVPQKRFTTVEEIADYALFL 236 (258)
T ss_pred cCCChHHHHHHHHhccCCccccCCHHHHHHHHHHH
Confidence 111100001101 1124578999999886543
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-30 Score=228.97 Aligned_cols=218 Identities=19% Similarity=0.295 Sum_probs=173.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
+++||||+||||.++++.|+++|+ +|++++|+.++++...+.+ +.++.++.||++|.++++++++++.+.++++|+
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~ 77 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKDEL---GDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDV 77 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---ccceEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 689999999999999999999995 8999999987776665544 346888999999999999999999988899999
Q ss_pred EEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcccc
Q 018819 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (350)
Q Consensus 168 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (350)
+|||||......++.+.+.++|++++++|+.|++.+++.++|.|.+++ .++||++||..+..+
T Consensus 78 vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~~--------------- 140 (248)
T PRK10538 78 LVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERN--HGHIINIGSTAGSWP--------------- 140 (248)
T ss_pred EEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEECCcccCCC---------------
Confidence 999999854334566789999999999999999999999999998764 469999999876532
Q ss_pred ccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhhhhh
Q 018819 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPP 327 (350)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~ 327 (350)
+++...|+.+|++++.+++.++.++ .+.||++++|+||.+.|+++...... ......
T Consensus 141 --------------------~~~~~~Y~~sK~~~~~~~~~l~~~~-~~~~i~v~~v~pg~i~~~~~~~~~~~--~~~~~~ 197 (248)
T PRK10538 141 --------------------YAGGNVYGATKAFVRQFSLNLRTDL-HGTAVRVTDIEPGLVGGTEFSNVRFK--GDDGKA 197 (248)
T ss_pred --------------------CCCCchhHHHHHHHHHHHHHHHHHh-cCCCcEEEEEeCCeecccccchhhcc--CcHHHH
Confidence 3566789999999999999999998 67799999999999986654221110 000000
Q ss_pred hHHhhhcCccchhhhhhhcccc
Q 018819 328 FQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 328 ~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..........+|+++|+.++++
T Consensus 198 ~~~~~~~~~~~~~dvA~~~~~l 219 (248)
T PRK10538 198 EKTYQNTVALTPEDVSEAVWWV 219 (248)
T ss_pred HhhccccCCCCHHHHHHHHHHH
Confidence 0001122357999999987653
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-30 Score=230.13 Aligned_cols=219 Identities=18% Similarity=0.158 Sum_probs=171.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEec-ChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r-~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
..+|++|||||++|||++++++|+++|+ +|+++.+ +.+..+.+.+++...+.++.++.||++|.+++.++++++.+.+
T Consensus 7 ~~~k~vlItGas~giG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 85 (258)
T PRK09134 7 AAPRAALVTGAARRIGRAIALDLAAHGF-DVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAAL 85 (258)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4678999999999999999999999996 7766554 5555666666665556678899999999999999999999888
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|+||||||.... .++.+.+.++|++++++|+.+++++++++.+.+.+.. .++||+++|..+..
T Consensus 86 ~~iD~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~~s~~~~~----------- 151 (258)
T PRK09134 86 GPITLLVNNASLFEY-DSAASFTRASWDRHMATNLRAPFVLAQAFARALPADA--RGLVVNMIDQRVWN----------- 151 (258)
T ss_pred CCCCEEEECCcCCCC-CccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CceEEEECchhhcC-----------
Confidence 999999999998644 5667889999999999999999999999999987654 47999998865542
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
+.+++..|++||++++.++++++.++ .+ +|++++|+||++.|.... ....+.+
T Consensus 152 ------------------------~~p~~~~Y~~sK~a~~~~~~~la~~~-~~-~i~v~~i~PG~v~t~~~~-~~~~~~~ 204 (258)
T PRK09134 152 ------------------------LNPDFLSYTLSKAALWTATRTLAQAL-AP-RIRVNAIGPGPTLPSGRQ-SPEDFAR 204 (258)
T ss_pred ------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-cC-CcEEEEeecccccCCccc-ChHHHHH
Confidence 12456689999999999999999998 44 499999999999885321 0001111
Q ss_pred hhhhhhHHhhhcCccchhhhhhhccc
Q 018819 323 LLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 323 ~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
...........+++|+|+.++.
T Consensus 205 ----~~~~~~~~~~~~~~d~a~~~~~ 226 (258)
T PRK09134 205 ----QHAATPLGRGSTPEEIAAAVRY 226 (258)
T ss_pred ----HHhcCCCCCCcCHHHHHHHHHH
Confidence 1111112345789999887654
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-30 Score=232.05 Aligned_cols=188 Identities=26% Similarity=0.334 Sum_probs=163.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccC--CCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~--~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+|++|||||+||||+++++.|+++|+ +|++++|+.+..++..+++... +.++.++.||++|++++++ ++++.+.+
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~~~~ 79 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVLKEI 79 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHHHhc
Confidence 568999999999999999999999995 8999999887776666555432 3468899999999999999 89988888
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|++|||||.... ..+.+.+.++|++.+++|+.+++++++.++|.|.+.+ .++||++||..+..+
T Consensus 80 ~~id~vv~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~vsS~~~~~~---------- 146 (280)
T PRK06914 80 GRIDLLVNNAGYANG-GFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQK--SGKIINISSISGRVG---------- 146 (280)
T ss_pred CCeeEEEECCccccc-CccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CCEEEEECcccccCC----------
Confidence 999999999998654 5667788999999999999999999999999997664 479999999877653
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.++...|+++|++++.++++++.++ .+.||++++|+||+++|+++
T Consensus 147 -------------------------~~~~~~Y~~sK~~~~~~~~~l~~~~-~~~~i~v~~v~pg~~~t~~~ 191 (280)
T PRK06914 147 -------------------------FPGLSPYVSSKYALEGFSESLRLEL-KPFGIDVALIEPGSYNTNIW 191 (280)
T ss_pred -------------------------CCCCchhHHhHHHHHHHHHHHHHHh-hhhCCEEEEEecCCcccchh
Confidence 2567799999999999999999988 56799999999999999865
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=230.48 Aligned_cols=225 Identities=22% Similarity=0.246 Sum_probs=178.4
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.++.|+++||||++|||++++++|+++|+ +|++++|+.+..++....+...+.++.++.+|++|++++.++++++.+.+
T Consensus 7 ~~~~~~vlVtGa~g~iG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 85 (274)
T PRK07775 7 HPDRRPALVAGASSGIGAATAIELAAAGF-PVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEAL 85 (274)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 34678999999999999999999999995 89888998777666666665556678899999999999999999998888
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|++|||||.... ..+.+.+.++|++.+++|+.+++++++.+++.|.++. .|+||++||..+..+
T Consensus 86 ~~id~vi~~Ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~--~g~iv~isS~~~~~~---------- 152 (274)
T PRK07775 86 GEIEVLVSGAGDTYF-GKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERR--RGDLIFVGSDVALRQ---------- 152 (274)
T ss_pred CCCCEEEECCCcCCC-cccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CceEEEECChHhcCC----------
Confidence 999999999998643 5566778999999999999999999999999887654 479999999877642
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchh-hH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP-LF 321 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~-~~ 321 (350)
.++...|+++|++++.+++.++.++ .+.||++++|+||+++|++....... ..
T Consensus 153 -------------------------~~~~~~Y~~sK~a~~~l~~~~~~~~-~~~gi~v~~v~pG~~~t~~~~~~~~~~~~ 206 (274)
T PRK07775 153 -------------------------RPHMGAYGAAKAGLEAMVTNLQMEL-EGTGVRASIVHPGPTLTGMGWSLPAEVIG 206 (274)
T ss_pred -------------------------CCCcchHHHHHHHHHHHHHHHHHHh-cccCeEEEEEeCCcccCcccccCChhhhh
Confidence 2456789999999999999999998 56799999999999998743221100 00
Q ss_pred HhhhhhhHH---hhhcCccchhhhhhhccc
Q 018819 322 RLLFPPFQK---YITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 322 ~~~~~~~~~---~~~~~~~s~~~~a~~i~~ 348 (350)
... ..... .....+..++++++.++.
T Consensus 207 ~~~-~~~~~~~~~~~~~~~~~~dva~a~~~ 235 (274)
T PRK07775 207 PML-EDWAKWGQARHDYFLRASDLARAITF 235 (274)
T ss_pred HHH-HHHHHhcccccccccCHHHHHHHHHH
Confidence 000 00000 012346899999988764
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-30 Score=229.83 Aligned_cols=219 Identities=21% Similarity=0.250 Sum_probs=175.4
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+++++|++|||||++|||++++++|+++|+ +|++++|+. +...+.++.++++|++|+++++++++++.+.
T Consensus 4 ~~~~~k~vlItGas~~iG~~la~~l~~~G~-~v~~~~~~~---------~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 73 (252)
T PRK08220 4 MDFSGKTVWVTGAAQGIGYAVALAFVEAGA-KVIGFDQAF---------LTQEDYPFATFVLDVSDAAAVAQVCQRLLAE 73 (252)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecch---------hhhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 457889999999999999999999999995 899998875 1122456889999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|++|||+|.... .++.+.+.++|+..+++|+.+++++++++.+.|.+++ .|+||++||..+..+
T Consensus 74 ~~~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~g~iv~~ss~~~~~~--------- 141 (252)
T PRK08220 74 TGPLDVLVNAAGILRM-GATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQR--SGAIVTVGSNAAHVP--------- 141 (252)
T ss_pred cCCCCEEEECCCcCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC--CCEEEEECCchhccC---------
Confidence 9999999999998644 6677889999999999999999999999999998754 479999999876532
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch-hh
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-PL 320 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~-~~ 320 (350)
.++...|++||++++.+++.++.++ .+.||+|++|+||+++|++...-.. +.
T Consensus 142 --------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~~i~v~~i~pg~v~t~~~~~~~~~~~ 194 (252)
T PRK08220 142 --------------------------RIGMAAYGASKAALTSLAKCVGLEL-APYGVRCNVVSPGSTDTDMQRTLWVDED 194 (252)
T ss_pred --------------------------CCCCchhHHHHHHHHHHHHHHHHHh-hHhCeEEEEEecCcCcchhhhhhccchh
Confidence 2466789999999999999999998 5679999999999999986422110 00
Q ss_pred -HHhhh----hhhH-HhhhcCccchhhhhhhcccc
Q 018819 321 -FRLLF----PPFQ-KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 -~~~~~----~~~~-~~~~~~~~s~~~~a~~i~~~ 349 (350)
..... ..+. ......+.+|+|+|+.++++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l 229 (252)
T PRK08220 195 GEQQVIAGFPEQFKLGIPLGKIARPQEIANAVLFL 229 (252)
T ss_pred hhhhhhhhHHHHHhhcCCCcccCCHHHHHHHHHHH
Confidence 00000 0011 11224578899999988654
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-30 Score=229.99 Aligned_cols=223 Identities=22% Similarity=0.242 Sum_probs=175.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEE-EecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIM-ACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~-~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
++++++++||||+||||.++|++|+++|+ .|++ ..|+.+..++..+.+...+.++.++.+|++|++++.++++++.++
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~G~-~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~ 81 (254)
T PRK12746 3 NLDGKVALVTGASRGIGRAIAMRLANDGA-LVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNE 81 (254)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999999996 6655 578877666666666544567889999999999999999999877
Q ss_pred C------CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCC
Q 018819 162 G------RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLA 235 (350)
Q Consensus 162 ~------g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~ 235 (350)
+ +++|++|||||.... ..+.+.+.+.|+.++++|+.+++++++.+.+.|.+. |+||++||..+..+
T Consensus 82 ~~~~~~~~~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~----~~~v~~sS~~~~~~--- 153 (254)
T PRK12746 82 LQIRVGTSEIDILVNNAGIGTQ-GTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAE----GRVINISSAEVRLG--- 153 (254)
T ss_pred hccccCCCCccEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcC----CEEEEECCHHhcCC---
Confidence 6 479999999998644 567788999999999999999999999999988653 59999999877642
Q ss_pred CCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccc
Q 018819 236 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 315 (350)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~ 315 (350)
.+++..|++||++++.++++++.++ .+.|+++++++||+++|++...
T Consensus 154 --------------------------------~~~~~~Y~~sK~a~~~~~~~~~~~~-~~~~i~v~~v~pg~~~t~~~~~ 200 (254)
T PRK12746 154 --------------------------------FTGSIAYGLSKGALNTMTLPLAKHL-GERGITVNTIMPGYTKTDINAK 200 (254)
T ss_pred --------------------------------CCCCcchHhhHHHHHHHHHHHHHHH-hhcCcEEEEEEECCccCcchhh
Confidence 3567789999999999999999998 5679999999999999986432
Q ss_pred cchhhHHhhhhhhHHhhhcCccchhhhhhhccc
Q 018819 316 EHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
. .+..................+++++++.+.+
T Consensus 201 ~-~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~ 232 (254)
T PRK12746 201 L-LDDPEIRNFATNSSVFGRIGQVEDIADAVAF 232 (254)
T ss_pred h-ccChhHHHHHHhcCCcCCCCCHHHHHHHHHH
Confidence 1 1100000000011112345688888887754
|
|
| >KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-30 Score=227.21 Aligned_cols=190 Identities=23% Similarity=0.297 Sum_probs=169.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+.+|.|+|||+-+|+|+.+|++|.++| .+|+..+-+++..+.+..+.. ..+...++.|||++++|+++.+.+.+..
T Consensus 26 ~~~~k~VlITGCDSGfG~~LA~~L~~~G-f~V~Agcl~~~gae~L~~~~~--s~rl~t~~LDVT~~esi~~a~~~V~~~l 102 (322)
T KOG1610|consen 26 SLSDKAVLITGCDSGFGRLLAKKLDKKG-FRVFAGCLTEEGAESLRGETK--SPRLRTLQLDVTKPESVKEAAQWVKKHL 102 (322)
T ss_pred ccCCcEEEEecCCcHHHHHHHHHHHhcC-CEEEEEeecCchHHHHhhhhc--CCcceeEeeccCCHHHHHHHHHHHHHhc
Confidence 4578899999999999999999999999 699999988877777776664 4577888999999999999999888753
Q ss_pred --CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 163 --RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 163 --g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
.++.+||||||+....++.+-.+.++|++++++|++|++.++++++|++++++ |||||+||+.|...
T Consensus 103 ~~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~ar---GRvVnvsS~~GR~~-------- 171 (322)
T KOG1610|consen 103 GEDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRAR---GRVVNVSSVLGRVA-------- 171 (322)
T ss_pred ccccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhcc---CeEEEecccccCcc--------
Confidence 45999999999887778888889999999999999999999999999998875 89999999999753
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccc
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~ 314 (350)
.|...+|++||+|++.|+.++++|+ .+.||.|..|.||..+|+...
T Consensus 172 ---------------------------~p~~g~Y~~SK~aVeaf~D~lR~EL-~~fGV~VsiiePG~f~T~l~~ 217 (322)
T KOG1610|consen 172 ---------------------------LPALGPYCVSKFAVEAFSDSLRREL-RPFGVKVSIIEPGFFKTNLAN 217 (322)
T ss_pred ---------------------------CcccccchhhHHHHHHHHHHHHHHH-HhcCcEEEEeccCccccccCC
Confidence 4678899999999999999999999 788999999999999998653
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-30 Score=229.01 Aligned_cols=212 Identities=22% Similarity=0.236 Sum_probs=164.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
++++|+++||||++|||++++++|+++|+ +|++++|+.... ...++.++.+|++++ ++++.+.+
T Consensus 2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~---------~~~~~~~~~~D~~~~------~~~~~~~~ 65 (235)
T PRK06550 2 EFMTKTVLITGAASGIGLAQARAFLAQGA-QVYGVDKQDKPD---------LSGNFHFLQLDLSDD------LEPLFDWV 65 (235)
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHHCCC-EEEEEeCCcccc---------cCCcEEEEECChHHH------HHHHHHhh
Confidence 46789999999999999999999999995 899888874321 123678899999987 34444456
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|++|||||......++.+.+.++|++++++|+.++++++++++|.+.+++ .|+||++||..+..+
T Consensus 66 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~~---------- 133 (235)
T PRK06550 66 PSVDILCNTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERK--SGIIINMCSIASFVA---------- 133 (235)
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEcChhhccC----------
Confidence 89999999999764335667889999999999999999999999999987765 479999999987653
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.++...|+.+|++++.+++.++.++ .++||++++|+||+++|++......+ ..
T Consensus 134 -------------------------~~~~~~Y~~sK~a~~~~~~~la~~~-~~~gi~v~~v~pg~v~t~~~~~~~~~-~~ 186 (235)
T PRK06550 134 -------------------------GGGGAAYTASKHALAGFTKQLALDY-AKDGIQVFGIAPGAVKTPMTAADFEP-GG 186 (235)
T ss_pred -------------------------CCCCcccHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCCccCcccccccCc-hH
Confidence 2466789999999999999999999 56799999999999999864322111 11
Q ss_pred hhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 323 LLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
............++.+|+|+|+.++++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~a~~~~~l 213 (235)
T PRK06550 187 LADWVARETPIKRWAEPEEVAELTLFL 213 (235)
T ss_pred HHHHHhccCCcCCCCCHHHHHHHHHHH
Confidence 000001111234567899999887754
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-30 Score=228.40 Aligned_cols=217 Identities=22% Similarity=0.223 Sum_probs=178.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCC-CceEEEEccCC--CHHHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDLA--SLDSVRQFVDTFR 159 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~-~~v~~~~~Dvs--~~~~v~~~~~~~~ 159 (350)
.+++|+++||||++|||.+++++|+++|+ +|++++|+.+..++..+++...+ .++.++.+|++ +.+++.++++.+.
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999995 99999999877777766665433 45677778876 7899999999999
Q ss_pred HcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCC
Q 018819 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (350)
+.++++|+||||||......++.+.+.+.|++.+++|+.+++++++++.+.|.+++ .++||++||..+..+
T Consensus 88 ~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~--~~~iv~~ss~~~~~~------- 158 (247)
T PRK08945 88 EQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSP--AASLVFTSSSVGRQG------- 158 (247)
T ss_pred HHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCC--CCEEEEEccHhhcCC-------
Confidence 98999999999999865555677888999999999999999999999999998765 479999999887643
Q ss_pred CCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchh
Q 018819 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (350)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~ 319 (350)
.+++..|++||++++.+++.++.++ ...||++++++||+++|++..... +
T Consensus 159 ----------------------------~~~~~~Y~~sK~a~~~~~~~~~~~~-~~~~i~~~~v~pg~v~t~~~~~~~-~ 208 (247)
T PRK08945 159 ----------------------------RANWGAYAVSKFATEGMMQVLADEY-QGTNLRVNCINPGGTRTAMRASAF-P 208 (247)
T ss_pred ----------------------------CCCCcccHHHHHHHHHHHHHHHHHh-cccCEEEEEEecCCccCcchhhhc-C
Confidence 2466789999999999999999998 567999999999999997532111 1
Q ss_pred hHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
. .....+.+|+++++.++++
T Consensus 209 -------~---~~~~~~~~~~~~~~~~~~~ 228 (247)
T PRK08945 209 -------G---EDPQKLKTPEDIMPLYLYL 228 (247)
T ss_pred -------c---ccccCCCCHHHHHHHHHHH
Confidence 0 0113457888888887664
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=227.02 Aligned_cols=224 Identities=21% Similarity=0.208 Sum_probs=178.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
+++++++|||||++|||..+++.|+++|+ +|++++|+.++.++..+++...+.++.++++|+++.++++++++.+.+.+
T Consensus 2 ~~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (253)
T PRK08217 2 DLKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDF 80 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46789999999999999999999999995 89999999887777777776666788999999999999999999998888
Q ss_pred CCCcEEEEccccCCCC-------CCC-CCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPT-------AKE-PTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTL 234 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~-------~~~-~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~ 234 (350)
+++|++|||||..... ..+ .+.+.++|+.++++|+.+++++.+.+.+.|.+... .++||++||.... +
T Consensus 81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~-~~~iv~~ss~~~~-~-- 156 (253)
T PRK08217 81 GQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGS-KGVIINISSIARA-G-- 156 (253)
T ss_pred CCCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-CeEEEEEcccccc-C--
Confidence 8999999999975421 111 56788999999999999999999999999876532 4689999886432 2
Q ss_pred CCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccc
Q 018819 235 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (350)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~ 314 (350)
.++...|++||++++.++++++.++ .++||++++++||+++|++..
T Consensus 157 ---------------------------------~~~~~~Y~~sK~a~~~l~~~la~~~-~~~~i~v~~v~pg~v~t~~~~ 202 (253)
T PRK08217 157 ---------------------------------NMGQTNYSASKAGVAAMTVTWAKEL-ARYGIRVAAIAPGVIETEMTA 202 (253)
T ss_pred ---------------------------------CCCCchhHHHHHHHHHHHHHHHHHH-HHcCcEEEEEeeCCCcCcccc
Confidence 2466789999999999999999998 567999999999999998653
Q ss_pred ccchhhHHhhhhhhHHhhhcCccchhhhhhhccc
Q 018819 315 REHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
.. .|... ...........+.+++|+++.+..
T Consensus 203 ~~-~~~~~--~~~~~~~~~~~~~~~~~~a~~~~~ 233 (253)
T PRK08217 203 AM-KPEAL--ERLEKMIPVGRLGEPEEIAHTVRF 233 (253)
T ss_pred cc-CHHHH--HHHHhcCCcCCCcCHHHHHHHHHH
Confidence 21 11100 000111122345789999888765
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=230.70 Aligned_cols=180 Identities=24% Similarity=0.271 Sum_probs=157.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
|++|||||++|||++++++|+++|+ +|++++|+.+..+.... ..+.++.+|++|.++++++++.+.+.++++|
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 74 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGY-EVWATARKAEDVEALAA------AGFTAVQLDVNDGAALARLAEELEAEHGGLD 74 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH------CCCeEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 5899999999999999999999995 99999998766554322 1367889999999999999999999899999
Q ss_pred EEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccc
Q 018819 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (350)
Q Consensus 167 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (350)
++|||||.... .++.+.+.++|+..+++|+.|+++++++++|.|.+. .|+||++||..+..+
T Consensus 75 ~vi~~ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~---~g~iv~isS~~~~~~-------------- 136 (274)
T PRK05693 75 VLINNAGYGAM-GPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRS---RGLVVNIGSVSGVLV-------------- 136 (274)
T ss_pred EEEECCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc---CCEEEEECCccccCC--------------
Confidence 99999998643 567788999999999999999999999999998764 369999999888653
Q ss_pred cccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.+....|++||++++.++++++.|+ .+.||+|++|+||+|+|++.
T Consensus 137 ---------------------~~~~~~Y~~sK~al~~~~~~l~~e~-~~~gi~v~~v~pg~v~t~~~ 181 (274)
T PRK05693 137 ---------------------TPFAGAYCASKAAVHALSDALRLEL-APFGVQVMEVQPGAIASQFA 181 (274)
T ss_pred ---------------------CCCccHHHHHHHHHHHHHHHHHHHh-hhhCeEEEEEecCccccccc
Confidence 2456789999999999999999998 56799999999999999864
|
|
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-30 Score=232.30 Aligned_cols=220 Identities=15% Similarity=0.145 Sum_probs=163.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEec-ChhHHHHHHHHhcc-CCCceEEEEccCCCHHHH----HHHHHHHHH
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGM-AKENYTIMHLDLASLDSV----RQFVDTFRR 160 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r-~~~~~~~~~~~l~~-~~~~v~~~~~Dvs~~~~v----~~~~~~~~~ 160 (350)
++++||||++|||+++++.|+++|+ +|+++.| +.+..++..+++.. .+.++.++.||++|++++ +++++.+.+
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~~ 80 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEGY-RVVLHYHRSAAAASTLAAELNARRPNSAVTCQADLSNSATLFSRCEAIIDACFR 80 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCCC-eEEEEcCCcHHHHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHHHHHHHHH
Confidence 4899999999999999999999996 7777654 55666666666643 344677899999999865 556666667
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCH-----------HHHHHHHhhhhHHHHHHHHHHHHHHhcCC----CCCCeEEEEe
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTA-----------EGFELSVGTNHLGHFLLSRLLLDDLKQSD----YPSKRLIIVG 225 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~-----------~~~~~~~~~n~~g~~~l~~~~~~~~~~~~----~~~g~iV~vS 225 (350)
.++++|+||||||.... .++.+.+. ++|++++++|+.+++++++++.|.|.+.. ...++||+++
T Consensus 81 ~~g~iD~lv~nAG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~~ 159 (267)
T TIGR02685 81 AFGRCDVLVNNASAFYP-TPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVNLC 159 (267)
T ss_pred ccCCceEEEECCccCCC-CcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEEEeh
Confidence 78999999999998644 33333333 35899999999999999999999986431 1136899999
Q ss_pred ccCCCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeC
Q 018819 226 SITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYP 305 (350)
Q Consensus 226 S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~P 305 (350)
|..+..+ .+++..|++||+++++++++++.|+ .+.||+|++|+|
T Consensus 160 s~~~~~~-----------------------------------~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~P 203 (267)
T TIGR02685 160 DAMTDQP-----------------------------------LLGFTMYTMAKHALEGLTRSAALEL-APLQIRVNGVAP 203 (267)
T ss_pred hhhccCC-----------------------------------CcccchhHHHHHHHHHHHHHHHHHH-hhhCeEEEEEec
Confidence 9877532 3577899999999999999999999 677999999999
Q ss_pred CcccCCcccccchhhHHhhhhhhHHhh-hcCccchhhhhhhcccc
Q 018819 306 GCIATTGLFREHIPLFRLLFPPFQKYI-TKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 306 G~v~t~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~a~~i~~~ 349 (350)
|+++|+........ .. ...... ...+.+|+|+++.++++
T Consensus 204 G~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~va~~~~~l 243 (267)
T TIGR02685 204 GLSLLPDAMPFEVQ-ED----YRRKVPLGQREASAEQIADVVIFL 243 (267)
T ss_pred CCccCccccchhHH-HH----HHHhCCCCcCCCCHHHHHHHHHHH
Confidence 99987632111000 00 001111 12467999999988764
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=224.77 Aligned_cols=212 Identities=23% Similarity=0.291 Sum_probs=164.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEec-ChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r-~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
.+++|++|||||++|||+++++.|+++|+ +|+++.+ +.+..+++.+++ .+.++.+|++|.+++.+++++
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~-----~~~~~~~D~~~~~~~~~~~~~---- 72 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGA-NVRFTYAGSKDAAERLAQET-----GATAVQTDSADRDAVIDVVRK---- 72 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHh-----CCeEEecCCCCHHHHHHHHHH----
Confidence 46789999999999999999999999996 7777655 445555444433 246788999999988877653
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|++|||||.... ....+.+.++|++++++|+.+++++++.+.+.|.+ .|+||++||..+...
T Consensus 73 ~~~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~----~g~iv~isS~~~~~~--------- 138 (237)
T PRK12742 73 SGALDILVVNAGIAVF-GDALELDADDIDRLFKINIHAPYHASVEAARQMPE----GGRIIIIGSVNGDRM--------- 138 (237)
T ss_pred hCCCcEEEECCCCCCC-CCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhc----CCeEEEEeccccccC---------
Confidence 4789999999998643 45567889999999999999999999999999864 369999999876321
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
+.++...|+++|++++.+++.++.++ .++||+||+|+||+++|++... ..+..
T Consensus 139 -------------------------~~~~~~~Y~~sKaa~~~~~~~la~~~-~~~gi~v~~v~Pg~~~t~~~~~-~~~~~ 191 (237)
T PRK12742 139 -------------------------PVAGMAAYAASKSALQGMARGLARDF-GPRGITINVVQPGPIDTDANPA-NGPMK 191 (237)
T ss_pred -------------------------CCCCCcchHHhHHHHHHHHHHHHHHH-hhhCeEEEEEecCcccCCcccc-ccHHH
Confidence 23567799999999999999999998 6779999999999999986432 11211
Q ss_pred HhhhhhhHH-hhhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQK-YITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~~-~~~~~~~s~~~~a~~i~~~ 349 (350)
. .... ....++.+|+|+++.+.++
T Consensus 192 ~----~~~~~~~~~~~~~p~~~a~~~~~l 216 (237)
T PRK12742 192 D----MMHSFMAIKRHGRPEEVAGMVAWL 216 (237)
T ss_pred H----HHHhcCCCCCCCCHHHHHHHHHHH
Confidence 1 0111 1124567999999887654
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=226.49 Aligned_cols=223 Identities=15% Similarity=0.173 Sum_probs=175.1
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEec-ChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r-~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
++++++++|||||++|||++++++|+++|+ +|++..| +.+........+...+.++.++.+|+++++++.++++++.+
T Consensus 2 ~~~~~~~vlitGasg~iG~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (252)
T PRK06077 2 YSLKDKVVVVTGSGRGIGRAIAVRLAKEGS-LVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATID 80 (252)
T ss_pred CCCCCcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHH
Confidence 456789999999999999999999999996 6766654 44444444455555556788899999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
.++++|++|||||.... .++.+.+.+.|+..+++|+.+++++++++.+.+.+. ++||++||..+..+
T Consensus 81 ~~~~~d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~----~~iv~~sS~~~~~~-------- 147 (252)
T PRK06077 81 RYGVADILVNNAGLGLF-SPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREG----GAIVNIASVAGIRP-------- 147 (252)
T ss_pred HcCCCCEEEECCCCCCC-CChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcC----cEEEEEcchhccCC--------
Confidence 99999999999998544 566678889999999999999999999999998763 59999999887632
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~ 320 (350)
.+++..|++||++++.+++.++.++ .+ +|++++|+||+++|++.... .+.
T Consensus 148 ---------------------------~~~~~~Y~~sK~~~~~~~~~l~~~~-~~-~i~v~~v~Pg~i~t~~~~~~-~~~ 197 (252)
T PRK06077 148 ---------------------------AYGLSIYGAMKAAVINLTKYLALEL-AP-KIRVNAIAPGFVKTKLGESL-FKV 197 (252)
T ss_pred ---------------------------CCCchHHHHHHHHHHHHHHHHHHHH-hc-CCEEEEEeeCCccChHHHhh-hhc
Confidence 3677899999999999999999998 45 89999999999999863211 110
Q ss_pred HHhhhhhhHHh--hhcCccchhhhhhhccc
Q 018819 321 FRLLFPPFQKY--ITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 321 ~~~~~~~~~~~--~~~~~~s~~~~a~~i~~ 348 (350)
.......+.+. ....+.+|+|+|+.++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~dva~~~~~ 227 (252)
T PRK06077 198 LGMSEKEFAEKFTLMGKILDPEEVAEFVAA 227 (252)
T ss_pred ccccHHHHHHhcCcCCCCCCHHHHHHHHHH
Confidence 00001111111 12346899999988765
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=223.50 Aligned_cols=172 Identities=19% Similarity=0.175 Sum_probs=144.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
.++||||++|||+++++.|+++|+ +|++.+|+.+++++..+++ ++.+++||++|+++++++++++.+ ++|+
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~-~v~~~~r~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~---~id~ 72 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGH-KVTLVGARRDDLEVAAKEL-----DVDAIVCDNTDPASLEEARGLFPH---HLDT 72 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhc-----cCcEEecCCCCHHHHHHHHHHHhh---cCcE
Confidence 489999999999999999999995 9999999987776665544 256789999999999999887753 6999
Q ss_pred EEEccccCCCC-----CCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 168 LVCNAAVYLPT-----AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 168 lv~~Ag~~~~~-----~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+|||||..... ..+.+ +.++|++++++|+.++++++++++|.|.+ +|+||++||.+.
T Consensus 73 lv~~ag~~~~~~~~~~~~~~~-~~~~~~~~~~~N~~~~~~~~~~~~~~~~~----~g~Iv~isS~~~------------- 134 (223)
T PRK05884 73 IVNVPAPSWDAGDPRTYSLAD-TANAWRNALDATVLSAVLTVQSVGDHLRS----GGSIISVVPENP------------- 134 (223)
T ss_pred EEECCCccccCCCCcccchhc-CHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCeEEEEecCCC-------------
Confidence 99999853210 12333 57899999999999999999999999965 379999999651
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
+....|++||+++.+|++.++.|+ .++||+||+|+||+++|++.
T Consensus 135 --------------------------~~~~~Y~asKaal~~~~~~la~e~-~~~gI~v~~v~PG~v~t~~~ 178 (223)
T PRK05884 135 --------------------------PAGSAEAAIKAALSNWTAGQAAVF-GTRGITINAVACGRSVQPGY 178 (223)
T ss_pred --------------------------CCccccHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecCccCchhh
Confidence 244689999999999999999999 67799999999999999853
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=227.89 Aligned_cols=220 Identities=23% Similarity=0.278 Sum_probs=178.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
++++|||||+||||+++++.|+++|+ +|++++|+....++..+++...+.++.++.+|++|.++++++++++.++++++
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 79 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGA-QLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGI 79 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 46899999999999999999999995 99999999877777777776666788899999999999999999999989999
Q ss_pred cEEEEccccCCCCCCCCCC-CHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 166 DVLVCNAAVYLPTAKEPTF-TAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~-~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
|++|||||.... ..+.+. +.+++++.+++|+.+++++++.+.+.|.+.. ++||++||..+..+
T Consensus 80 d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~---~~iv~~sS~~~~~~------------ 143 (263)
T PRK06181 80 DILVNNAGITMW-SRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASR---GQIVVVSSLAGLTG------------ 143 (263)
T ss_pred CEEEECCCcccc-cchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC---CEEEEEecccccCC------------
Confidence 999999998654 556667 8999999999999999999999999887643 69999999887642
Q ss_pred cccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH-h
Q 018819 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR-L 323 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~-~ 323 (350)
.++...|+++|++++.+++.++.++ ...++++++++||++.|++.......... .
T Consensus 144 -----------------------~~~~~~Y~~sK~~~~~~~~~l~~~~-~~~~i~~~~i~pg~v~t~~~~~~~~~~~~~~ 199 (263)
T PRK06181 144 -----------------------VPTRSGYAASKHALHGFFDSLRIEL-ADDGVAVTVVCPGFVATDIRKRALDGDGKPL 199 (263)
T ss_pred -----------------------CCCccHHHHHHHHHHHHHHHHHHHh-hhcCceEEEEecCccccCcchhhcccccccc
Confidence 3566789999999999999999988 56799999999999999865321100000 0
Q ss_pred hhhhhHHhhhcCccchhhhhhhcccc
Q 018819 324 LFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 324 ~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..++. ....+.+|+++++.++++
T Consensus 200 ~~~~~---~~~~~~~~~dva~~i~~~ 222 (263)
T PRK06181 200 GKSPM---QESKIMSAEECAEAILPA 222 (263)
T ss_pred ccccc---cccCCCCHHHHHHHHHHH
Confidence 00110 012468999999887653
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-29 Score=223.65 Aligned_cols=220 Identities=21% Similarity=0.283 Sum_probs=175.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEec-ChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r-~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
|++|||||++|||++++++|+++|+ +|+++.| +.+..++..+++...+.++.++.||++|+++++++++++.+.++++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGY-RVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELGPI 79 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 5899999999999999999999996 7877777 5555555555555455678999999999999999999999988999
Q ss_pred cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcc
Q 018819 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (350)
|++|||||.... ..+.+.+.++|++.+++|+.+++.+++.+++.|.+.+ .++||++||..+..+
T Consensus 80 d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~iss~~~~~~------------- 143 (242)
T TIGR01829 80 DVLVNNAGITRD-ATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERG--WGRIINISSVNGQKG------------- 143 (242)
T ss_pred cEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEEcchhhcCC-------------
Confidence 999999998644 5667889999999999999999999999999998765 469999999877643
Q ss_pred ccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhhh
Q 018819 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 325 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~ 325 (350)
.+++..|+++|+++..+++.++.++ ...||++++++||+++|++...- .+- ...
T Consensus 144 ----------------------~~~~~~y~~sk~a~~~~~~~la~~~-~~~~i~v~~i~pg~~~t~~~~~~-~~~--~~~ 197 (242)
T TIGR01829 144 ----------------------QFGQTNYSAAKAGMIGFTKALAQEG-ATKGVTVNTISPGYIATDMVMAM-RED--VLN 197 (242)
T ss_pred ----------------------CCCcchhHHHHHHHHHHHHHHHHHh-hhhCeEEEEEeeCCCcCcccccc-chH--HHH
Confidence 2466789999999999999999998 56799999999999999865321 110 000
Q ss_pred hhhHHhhhcCccchhhhhhhcccc
Q 018819 326 PPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 326 ~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..........+.+|+++++.+.++
T Consensus 198 ~~~~~~~~~~~~~~~~~a~~~~~l 221 (242)
T TIGR01829 198 SIVAQIPVGRLGRPEEIAAAVAFL 221 (242)
T ss_pred HHHhcCCCCCCcCHHHHHHHHHHH
Confidence 011111224467888888876543
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-29 Score=223.92 Aligned_cols=219 Identities=20% Similarity=0.252 Sum_probs=173.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChh-HHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFL-KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~-~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
|+++||||++|||+++|++|+++| .+|++++|+.. ...+....+...+.++.++.||++|.++++++++++.++++++
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g-~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i 81 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDG-YRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGPV 81 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 589999999999999999999999 59999998743 2333333333345578999999999999999999999999999
Q ss_pred cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcc
Q 018819 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (350)
|++|||+|.... ..+.+.+.++|++++++|+.+++++++.+++.+.+.+ .++||++||..+..+
T Consensus 82 d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~iss~~~~~~------------- 145 (245)
T PRK12824 82 DILVNNAGITRD-SVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQG--YGRIINISSVNGLKG------------- 145 (245)
T ss_pred CEEEECCCCCCC-CccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC--CeEEEEECChhhccC-------------
Confidence 999999998644 5667889999999999999999999999999997654 479999999877642
Q ss_pred ccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhhh
Q 018819 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 325 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~ 325 (350)
.++...|+++|++++.+++.++.++ .+.||++++++||+++|++..... +. ...
T Consensus 146 ----------------------~~~~~~Y~~sK~a~~~~~~~l~~~~-~~~~i~v~~v~pg~~~t~~~~~~~-~~--~~~ 199 (245)
T PRK12824 146 ----------------------QFGQTNYSAAKAGMIGFTKALASEG-ARYGITVNCIAPGYIATPMVEQMG-PE--VLQ 199 (245)
T ss_pred ----------------------CCCChHHHHHHHHHHHHHHHHHHHH-HHhCeEEEEEEEcccCCcchhhcC-HH--HHH
Confidence 2467789999999999999999998 567999999999999998642211 10 000
Q ss_pred hhhHHhhhcCccchhhhhhhccc
Q 018819 326 PPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 326 ~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
............+++++++.+..
T Consensus 200 ~~~~~~~~~~~~~~~~va~~~~~ 222 (245)
T PRK12824 200 SIVNQIPMKRLGTPEEIAAAVAF 222 (245)
T ss_pred HHHhcCCCCCCCCHHHHHHHHHH
Confidence 00111112345688888887754
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=226.26 Aligned_cols=222 Identities=18% Similarity=0.110 Sum_probs=173.4
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCcEEEEEecC-hhHHHHHHHHhccCC--CceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 89 VIITGASSGLGLATAKALAETGKWHIIMACRD-FLKAERAAKSAGMAK--ENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 89 ~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~-~~~~~~~~~~l~~~~--~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
++||||++|||+++++.|+++|+ +|++++|+ .+.+++..+++.... ..+..++||++|+++++++++++.+.++++
T Consensus 2 ilVtG~~~~iG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 80 (251)
T PRK07069 2 AFITGAAGGLGRAIARRMAEQGA-KVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGGL 80 (251)
T ss_pred EEEECCCChHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence 79999999999999999999995 89999997 666666666554321 235568899999999999999999999999
Q ss_pred cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcc
Q 018819 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (350)
|++|||||.... ..+.+.+.++|++++++|+.+++.+++.+++.|.+.+ .++||++||..+..+
T Consensus 81 d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~ii~~ss~~~~~~------------- 144 (251)
T PRK07069 81 SVLVNNAGVGSF-GAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQ--PASIVNISSVAAFKA------------- 144 (251)
T ss_pred cEEEECCCcCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC--CcEEEEecChhhccC-------------
Confidence 999999998644 5677889999999999999999999999999998765 479999999988743
Q ss_pred ccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcC-CCCcEEEEeeCCcccCCcccccchhhH-Hh
Q 018819 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE-ETGIAFASLYPGCIATTGLFREHIPLF-RL 323 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~-~~gi~v~~v~PG~v~t~~~~~~~~~~~-~~ 323 (350)
.+++..|+++|++++.++++++.++.. ..+|++++|+||+++|++......... ..
T Consensus 145 ----------------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~ 202 (251)
T PRK07069 145 ----------------------EPDYTAYNASKAAVASLTKSIALDCARRGLDVRCNSIHPTFIRTGIVDPIFQRLGEEE 202 (251)
T ss_pred ----------------------CCCCchhHHHHHHHHHHHHHHHHHhcccCCcEEEEEEeecccCCcchhHHhhhccchh
Confidence 256778999999999999999999842 236999999999999987532110000 00
Q ss_pred hhhhhH-HhhhcCccchhhhhhhcccc
Q 018819 324 LFPPFQ-KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 324 ~~~~~~-~~~~~~~~s~~~~a~~i~~~ 349 (350)
....+. ......+.+|+++++.++++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~va~~~~~l 229 (251)
T PRK07069 203 ATRKLARGVPLGRLGEPDDVAHAVLYL 229 (251)
T ss_pred HHHHHhccCCCCCCcCHHHHHHHHHHH
Confidence 001111 11123456899999887654
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-30 Score=215.57 Aligned_cols=164 Identities=29% Similarity=0.419 Sum_probs=150.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC--hhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRD--FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~--~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
|++|||||++|||++++++|+++|+++|++++|+ .+..+++.++++..+.++.+++||++++++++++++++.+.+++
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6899999999999999999999987899999999 67778888888877889999999999999999999999988999
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
+|++|||||... ...+.+++.++|++++++|+.+++++.+++.| .. .|+||++||+.+..+
T Consensus 81 ld~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~--~~----~g~iv~~sS~~~~~~------------ 141 (167)
T PF00106_consen 81 LDILINNAGIFS-DGSLDDLSEEELERVFRVNLFGPFLLAKALLP--QG----GGKIVNISSIAGVRG------------ 141 (167)
T ss_dssp ESEEEEECSCTT-SBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH--HT----TEEEEEEEEGGGTSS------------
T ss_pred cccccccccccc-ccccccccchhhhhccccccceeeeeeehhee--cc----ccceEEecchhhccC------------
Confidence 999999999986 57888889999999999999999999999999 22 479999999999864
Q ss_pred cccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhh
Q 018819 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRF 292 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~ 292 (350)
.+++..|++||+++.+|++++++|+
T Consensus 142 -----------------------~~~~~~Y~askaal~~~~~~la~e~ 166 (167)
T PF00106_consen 142 -----------------------SPGMSAYSASKAALRGLTQSLAAEL 166 (167)
T ss_dssp -----------------------STTBHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------CCCChhHHHHHHHHHHHHHHHHHhc
Confidence 4788999999999999999999986
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-29 Score=224.17 Aligned_cols=224 Identities=21% Similarity=0.210 Sum_probs=180.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEE-ecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMA-CRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~-~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
.+.+|++|||||+++||.+++++|+++|+ +|+++ +|+.+..+...+.+...+.++.++.+|++|++++.++++.+.+.
T Consensus 2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (247)
T PRK05565 2 KLMGKVAIVTGASGGIGRAIAELLAKEGA-KVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEK 80 (247)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999999995 77777 89877777776666555667899999999999999999999998
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|++|||+|.. ....+.+.+.++|++.+++|+.+++++++.+.+.+.+++ .++||++||..+..+.
T Consensus 81 ~~~id~vi~~ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~~v~~sS~~~~~~~-------- 149 (247)
T PRK05565 81 FGKIDILVNNAGIS-NFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRK--SGVIVNISSIWGLIGA-------- 149 (247)
T ss_pred hCCCCEEEECCCcC-CCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEECCHhhccCC--------
Confidence 89999999999986 335667789999999999999999999999999997764 4689999998876532
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
+....|+.+|++++.++++++.++ ...||++++|+||+++|+..... .+.
T Consensus 150 ---------------------------~~~~~y~~sK~a~~~~~~~~~~~~-~~~gi~~~~v~pg~v~t~~~~~~-~~~- 199 (247)
T PRK05565 150 ---------------------------SCEVLYSASKGAVNAFTKALAKEL-APSGIRVNAVAPGAIDTEMWSSF-SEE- 199 (247)
T ss_pred ---------------------------CCccHHHHHHHHHHHHHHHHHHHH-HHcCeEEEEEEECCccCcccccc-ChH-
Confidence 456789999999999999999998 56799999999999999754321 111
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.. .............+++++++.++++
T Consensus 200 ~~-~~~~~~~~~~~~~~~~~va~~~~~l 226 (247)
T PRK05565 200 DK-EGLAEEIPLGRLGKPEEIAKVVLFL 226 (247)
T ss_pred HH-HHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 00 0111111223456888888876653
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=257.16 Aligned_cols=214 Identities=23% Similarity=0.205 Sum_probs=178.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|+++||||++|||++++++|+++|+ +|++++|+.+..++..+++...+.++.++.||++|.++++++++++.+.+
T Consensus 368 ~~~~k~vlItGas~giG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 446 (657)
T PRK07201 368 PLVGKVVLITGASSGIGRATAIKVAEAGA-TVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEH 446 (657)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 56799999999999999999999999995 99999999888888877776666789999999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCC--CHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTF--TAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~--~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
+++|++|||||.... ..+.+. +.+++++++++|+.|++++++.++|.|.+++ .|+||++||.++..+
T Consensus 447 g~id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~~-------- 515 (657)
T PRK07201 447 GHVDYLVNNAGRSIR-RSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERR--FGHVVNVSSIGVQTN-------- 515 (657)
T ss_pred CCCCEEEECCCCCCC-CChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--CCEEEEECChhhcCC--------
Confidence 999999999998533 233222 3588999999999999999999999998765 479999999987643
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~ 320 (350)
.++...|++||++++.++++++.|+ .+.||+|++|+||+|+|++.....
T Consensus 516 ---------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~~i~v~~v~pg~v~T~~~~~~~--- 564 (657)
T PRK07201 516 ---------------------------APRFSAYVASKAALDAFSDVAASET-LSDGITFTTIHMPLVRTPMIAPTK--- 564 (657)
T ss_pred ---------------------------CCCcchHHHHHHHHHHHHHHHHHHH-HhhCCcEEEEECCcCcccccCccc---
Confidence 2567789999999999999999999 567999999999999998753211
Q ss_pred HHhhhhhhHHhhhcCccchhhhhhhccc
Q 018819 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 321 ~~~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
.. ......+|+++|+.+++
T Consensus 565 -~~--------~~~~~~~~~~~a~~i~~ 583 (657)
T PRK07201 565 -RY--------NNVPTISPEEAADMVVR 583 (657)
T ss_pred -cc--------cCCCCCCHHHHHHHHHH
Confidence 00 01224677877777654
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-29 Score=224.82 Aligned_cols=191 Identities=23% Similarity=0.299 Sum_probs=161.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh-hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~-~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+|++|||||++|||.+++++|+++|+ +|++++|+. +..++..+.++..+.++.++.+|++|++++.++++++.+.+++
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAAGF-DLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGR 80 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 36899999999999999999999995 888888763 4445555555545567899999999999999999999999999
Q ss_pred CcEEEEccccCCC-CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCC----CCeEEEEeccCCCCCCCCCCCC
Q 018819 165 LDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYP----SKRLIIVGSITGNTNTLAGNVP 239 (350)
Q Consensus 165 id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~----~g~iV~vSS~~~~~~~~~~~~~ 239 (350)
+|++|||||.... ..++.+.+.++|+..+++|+.+++++++++.+.|.++... .++||++||..+..+
T Consensus 81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~------- 153 (256)
T PRK12745 81 IDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIMV------- 153 (256)
T ss_pred CCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhccC-------
Confidence 9999999998532 2456678899999999999999999999999998765421 257999999988653
Q ss_pred CCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.++...|+.||++++.+++.++.++ .+.||++++|+||++.|++.
T Consensus 154 ----------------------------~~~~~~Y~~sK~a~~~~~~~l~~~~-~~~gi~v~~i~pg~v~t~~~ 198 (256)
T PRK12745 154 ----------------------------SPNRGEYCISKAGLSMAAQLFAARL-AEEGIGVYEVRPGLIKTDMT 198 (256)
T ss_pred ----------------------------CCCCcccHHHHHHHHHHHHHHHHHH-HHhCCEEEEEecCCCcCccc
Confidence 2456789999999999999999998 56799999999999999864
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-29 Score=222.27 Aligned_cols=220 Identities=23% Similarity=0.259 Sum_probs=174.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEec----ChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR----DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 158 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r----~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~ 158 (350)
.+++++++||||++|||+++|+.|+++|+ .|++++| +.+..++..+++...+.++.++.||++|.++++++++++
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 81 (249)
T PRK12827 3 SLDSRRVLITGGSGGLGRAIAVRLAADGA-DVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAG 81 (249)
T ss_pred CcCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 35678999999999999999999999995 7777554 344455555566555678899999999999999999999
Q ss_pred HHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHH-HHHhcCCCCCCeEEEEeccCCCCCCCCCC
Q 018819 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL-DDLKQSDYPSKRLIIVGSITGNTNTLAGN 237 (350)
Q Consensus 159 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~-~~~~~~~~~~g~iV~vSS~~~~~~~~~~~ 237 (350)
.+.++++|++|||||.... ..+.+.+.++|++.+++|+.+++++++++. +.+.++. .++||++||..+..+
T Consensus 82 ~~~~~~~d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~~iv~~sS~~~~~~----- 153 (249)
T PRK12827 82 VEEFGRLDILVNNAGIATD-AAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARR--GGRIVNIASVAGVRG----- 153 (249)
T ss_pred HHHhCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCC--CeEEEEECCchhcCC-----
Confidence 8888899999999998654 567788999999999999999999999999 5555543 368999999887643
Q ss_pred CCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccc
Q 018819 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317 (350)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~ 317 (350)
.++...|+.+|++++.+++.++.++ .+.||++++|+||+++|++.....
T Consensus 154 ------------------------------~~~~~~y~~sK~a~~~~~~~l~~~~-~~~~i~~~~i~pg~v~t~~~~~~~ 202 (249)
T PRK12827 154 ------------------------------NRGQVNYAASKAGLIGLTKTLANEL-APRGITVNAVAPGAINTPMADNAA 202 (249)
T ss_pred ------------------------------CCCCchhHHHHHHHHHHHHHHHHHh-hhhCcEEEEEEECCcCCCcccccc
Confidence 2466789999999999999999998 566999999999999998653321
Q ss_pred hhhHHhhhhhhHH-hhhcCccchhhhhhhccc
Q 018819 318 IPLFRLLFPPFQK-YITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 318 ~~~~~~~~~~~~~-~~~~~~~s~~~~a~~i~~ 348 (350)
+. +...+ .......+++++++.+.+
T Consensus 203 -~~-----~~~~~~~~~~~~~~~~~va~~~~~ 228 (249)
T PRK12827 203 -PT-----EHLLNPVPVQRLGEPDEVAALVAF 228 (249)
T ss_pred -hH-----HHHHhhCCCcCCcCHHHHHHHHHH
Confidence 11 11111 111234588888877654
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-29 Score=221.74 Aligned_cols=224 Identities=20% Similarity=0.207 Sum_probs=174.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEE-EecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIM-ACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~-~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
+++|||||+||||++++++|+++|+ +|++ ..|+.+..++...++...+.++.+++||++|+++++++++++.+.++++
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~i 80 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGY-TVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDEPL 80 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhCCCC
Confidence 5899999999999999999999996 6665 5677766666666666556678899999999999999999999889999
Q ss_pred cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCC-CCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY-PSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~-~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
|++|||||.......+.+.+.++|+..+++|+.+++++++.+++.+.++.. ..|+||++||..+..+.
T Consensus 81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~----------- 149 (247)
T PRK09730 81 AALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGA----------- 149 (247)
T ss_pred CEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCC-----------
Confidence 999999998644456778899999999999999999999999998876421 13689999998776532
Q ss_pred cccccccccCCCCCCCcccCCCCCCc-hhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHh
Q 018819 245 GDLRGFAGGLNGLNSSSMIDGGDFDG-AKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL 323 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~ 323 (350)
++ ...|+++|++++.+++.++.++ .++||++++|+||++.|++......+..
T Consensus 150 ------------------------~~~~~~Y~~sK~~~~~~~~~l~~~~-~~~~i~v~~i~pg~~~~~~~~~~~~~~~-- 202 (247)
T PRK09730 150 ------------------------PGEYVDYAASKGAIDTLTTGLSLEV-AAQGIRVNCVRPGFIYTEMHASGGEPGR-- 202 (247)
T ss_pred ------------------------CCcccchHhHHHHHHHHHHHHHHHH-HHhCeEEEEEEeCCCcCcccccCCCHHH--
Confidence 22 3579999999999999999998 5679999999999999986432211110
Q ss_pred hhhhhHHhhhcCccchhhhhhhcccc
Q 018819 324 LFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 324 ~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..............+++++++.++++
T Consensus 203 ~~~~~~~~~~~~~~~~~dva~~~~~~ 228 (247)
T PRK09730 203 VDRVKSNIPMQRGGQPEEVAQAIVWL 228 (247)
T ss_pred HHHHHhcCCCCCCcCHHHHHHHHHhh
Confidence 00000001112345788888877653
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-29 Score=223.72 Aligned_cols=221 Identities=19% Similarity=0.250 Sum_probs=175.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
+|++|||||++|||++++++|+++|+ +|++++|+.+..+...+.+. +.++.++.+|++|.+++..+++++.++++++
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 78 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDIDAAALAAFADALG--DARFVPVACDLTDAASLAAALANAAAERGPV 78 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 57899999999999999999999995 89999999877777766663 3468899999999999999999999888999
Q ss_pred cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcc
Q 018819 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (350)
|++|||+|.... ..+.+.+.++|+..+++|+.+++++.+++.+.+.+++ .++||++||..+...
T Consensus 79 d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~~sS~~~~~~------------- 142 (257)
T PRK07074 79 DVLVANAGAARA-ASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRS--RGAVVNIGSVNGMAA------------- 142 (257)
T ss_pred CEEEECCCCCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CeEEEEEcchhhcCC-------------
Confidence 999999998654 4666788999999999999999999999999987655 469999999765421
Q ss_pred ccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhhh
Q 018819 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 325 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~ 325 (350)
.+...|+.+|++++.++++++.++ .+.||++++++||+++|++..........+..
T Consensus 143 -----------------------~~~~~y~~sK~a~~~~~~~~a~~~-~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~ 198 (257)
T PRK07074 143 -----------------------LGHPAYSAAKAGLIHYTKLLAVEY-GRFGIRANAVAPGTVKTQAWEARVAANPQVFE 198 (257)
T ss_pred -----------------------CCCcccHHHHHHHHHHHHHHHHHH-hHhCeEEEEEEeCcCCcchhhcccccChHHHH
Confidence 234589999999999999999998 66799999999999999865321110000000
Q ss_pred hhhHHhhhcCccchhhhhhhcccc
Q 018819 326 PPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 326 ~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..........+..++|+++.+.++
T Consensus 199 ~~~~~~~~~~~~~~~d~a~~~~~l 222 (257)
T PRK07074 199 ELKKWYPLQDFATPDDVANAVLFL 222 (257)
T ss_pred HHHhcCCCCCCCCHHHHHHHHHHH
Confidence 000011124568889888877654
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-29 Score=223.63 Aligned_cols=223 Identities=24% Similarity=0.233 Sum_probs=170.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh-hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC-
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDF-LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP- 164 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~-~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~- 164 (350)
|++|||||+||||++++++|+++|+ +|++++|+. +..++..+ ..+.++.++.+|++|+++++++++++.+.++.
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~-~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 77 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGT-HVISISRTENKELTKLAE---QYNSNLTFHSLDLQDVHELETNFNEILSSIQED 77 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCC-EEEEEeCCchHHHHHHHh---ccCCceEEEEecCCCHHHHHHHHHHHHHhcCcc
Confidence 5899999999999999999999995 899999976 33333322 23457889999999999999999998776543
Q ss_pred -C--cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 165 -L--DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 165 -i--d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
+ +++|||||...+..++.+.+.++|++.+++|+.+++.+++.++|.|.+.+. .++||++||..+..
T Consensus 78 ~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~~---------- 146 (251)
T PRK06924 78 NVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKV-DKRVINISSGAAKN---------- 146 (251)
T ss_pred cCCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCC-CceEEEecchhhcC----------
Confidence 2 289999998655567888999999999999999999999999999876431 36899999987653
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhc-CCCCcEEEEeeCCcccCCcccccc---
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFH-EETGIAFASLYPGCIATTGLFREH--- 317 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~-~~~gi~v~~v~PG~v~t~~~~~~~--- 317 (350)
+++++..|+++|++++.+++.++.|+. .+.||+|++|+||+++|++.....
T Consensus 147 -------------------------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~ 201 (251)
T PRK06924 147 -------------------------PYFGWSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTNMQAQIRSSS 201 (251)
T ss_pred -------------------------CCCCcHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEEecCCccccHhHHHHHhcC
Confidence 246778999999999999999999974 346899999999999998642100
Q ss_pred hhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 318 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
........+.........+.+|+++|+.++.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l 233 (251)
T PRK06924 202 KEDFTNLDRFITLKEEGKLLSPEYVAKALRNL 233 (251)
T ss_pred cccchHHHHHHHHhhcCCcCCHHHHHHHHHHH
Confidence 00000000111111234578999999987653
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-29 Score=221.34 Aligned_cols=206 Identities=19% Similarity=0.244 Sum_probs=169.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhcc-CCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~-~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
|+++||||++|||++++++|+++|+ +|++++|+.+..++..+++.. .+.++.+++||++|+++++++++++.+ .+
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~---~~ 77 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA-RLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPA---LP 77 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhh---cC
Confidence 5899999999999999999999995 899999998777666655533 245789999999999999999998765 47
Q ss_pred cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcc
Q 018819 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (350)
|++|||+|.... ..+.+.+.+++.+.+++|+.+++++++++.|.|.+++ .++||++||..+..+
T Consensus 78 d~vv~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~~------------- 141 (243)
T PRK07102 78 DIVLIAVGTLGD-QAACEADPALALREFRTNFEGPIALLTLLANRFEARG--SGTIVGISSVAGDRG------------- 141 (243)
T ss_pred CEEEECCcCCCC-cccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC--CCEEEEEecccccCC-------------
Confidence 999999998654 5566788999999999999999999999999998765 479999999877643
Q ss_pred ccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhhh
Q 018819 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 325 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~ 325 (350)
.++...|+++|+++..++++++.|+ .+.||++++|+||+++|++......|
T Consensus 142 ----------------------~~~~~~Y~~sK~a~~~~~~~l~~el-~~~gi~v~~v~pg~v~t~~~~~~~~~------ 192 (243)
T PRK07102 142 ----------------------RASNYVYGSAKAALTAFLSGLRNRL-FKSGVHVLTVKPGFVRTPMTAGLKLP------ 192 (243)
T ss_pred ----------------------CCCCcccHHHHHHHHHHHHHHHHHh-hccCcEEEEEecCcccChhhhccCCC------
Confidence 2456789999999999999999998 56799999999999999854221111
Q ss_pred hhhHHhhhcCccchhhhhhhccc
Q 018819 326 PPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 326 ~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
.....+|+++++.+++
T Consensus 193 -------~~~~~~~~~~a~~i~~ 208 (243)
T PRK07102 193 -------GPLTAQPEEVAKDIFR 208 (243)
T ss_pred -------ccccCCHHHHHHHHHH
Confidence 1224678888877654
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-28 Score=222.62 Aligned_cols=184 Identities=23% Similarity=0.281 Sum_probs=159.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
.|++|||||+||||++++++|+++|+ +|+++.|+.+..+...+.. +.++.++++|++|.++++++++++.+.++++
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 77 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARGD-RVAATVRRPDALDDLKARY---GDRLWVLQLDVTDSAAVRAVVDRAFAALGRI 77 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhc---cCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 36899999999999999999999995 8999999977666554443 3468899999999999999999998888999
Q ss_pred cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcc
Q 018819 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (350)
|+||||||.... ....+.+.++|++.+++|+.++++++++++|+|.+++ .++||++||..+..+
T Consensus 78 d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~~------------- 141 (276)
T PRK06482 78 DVVVSNAGYGLF-GAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQG--GGRIVQVSSEGGQIA------------- 141 (276)
T ss_pred CEEEECCCCCCC-cccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCEEEEEcCcccccC-------------
Confidence 999999998654 5666778999999999999999999999999987655 469999999876532
Q ss_pred ccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
.++...|++||++++.+++.++.++ .+.||++++++||.+.|++
T Consensus 142 ----------------------~~~~~~Y~~sK~a~~~~~~~l~~~~-~~~gi~v~~v~pg~~~t~~ 185 (276)
T PRK06482 142 ----------------------YPGFSLYHATKWGIEGFVEAVAQEV-APFGIEFTIVEPGPARTNF 185 (276)
T ss_pred ----------------------CCCCchhHHHHHHHHHHHHHHHHHh-hccCcEEEEEeCCccccCC
Confidence 3567899999999999999999998 5679999999999998875
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-29 Score=240.26 Aligned_cols=218 Identities=22% Similarity=0.264 Sum_probs=172.4
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh--hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF--LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~--~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
..++++++|||||++|||++++++|+++|+ +|+++++.. +..++..+++ ...++.||++|.++++++++.+.
T Consensus 206 ~~~~g~~vlItGasggIG~~la~~l~~~Ga-~vi~~~~~~~~~~l~~~~~~~-----~~~~~~~Dv~~~~~~~~~~~~~~ 279 (450)
T PRK08261 206 RPLAGKVALVTGAARGIGAAIAEVLARDGA-HVVCLDVPAAGEALAAVANRV-----GGTALALDITAPDAPARIAEHLA 279 (450)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHHHHHc-----CCeEEEEeCCCHHHHHHHHHHHH
Confidence 356899999999999999999999999996 788887742 3334443333 23578899999999999999999
Q ss_pred HcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCC
Q 018819 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (350)
+.++++|++|||||+..+ ..+.+.+.++|+.++++|+.+++++++++.+.+..++ .++||++||.++..+
T Consensus 280 ~~~g~id~vi~~AG~~~~-~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~--~g~iv~~SS~~~~~g------- 349 (450)
T PRK08261 280 ERHGGLDIVVHNAGITRD-KTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGD--GGRIVGVSSISGIAG------- 349 (450)
T ss_pred HhCCCCCEEEECCCcCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcC--CCEEEEECChhhcCC-------
Confidence 989999999999998754 6777889999999999999999999999999654333 479999999988754
Q ss_pred CCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchh
Q 018819 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (350)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~ 319 (350)
.+++..|+++|++++.+++.++.++ .+.||++|+|+||+++|++... .|
T Consensus 350 ----------------------------~~~~~~Y~asKaal~~~~~~la~el-~~~gi~v~~v~PG~i~t~~~~~--~~ 398 (450)
T PRK08261 350 ----------------------------NRGQTNYAASKAGVIGLVQALAPLL-AERGITINAVAPGFIETQMTAA--IP 398 (450)
T ss_pred ----------------------------CCCChHHHHHHHHHHHHHHHHHHHH-hhhCcEEEEEEeCcCcchhhhc--cc
Confidence 2577899999999999999999998 5679999999999999976422 12
Q ss_pred hHHhhhhhhHHh--hhcCccchhhhhhhcccc
Q 018819 320 LFRLLFPPFQKY--ITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 320 ~~~~~~~~~~~~--~~~~~~s~~~~a~~i~~~ 349 (350)
.. .....+. .......|+|+++.+.++
T Consensus 399 ~~---~~~~~~~~~~l~~~~~p~dva~~~~~l 427 (450)
T PRK08261 399 FA---TREAGRRMNSLQQGGLPVDVAETIAWL 427 (450)
T ss_pred hh---HHHHHhhcCCcCCCCCHHHHHHHHHHH
Confidence 10 0011111 112345788888887764
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=248.22 Aligned_cols=229 Identities=17% Similarity=0.251 Sum_probs=180.8
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhcc--CCCceEEEEccCCCHHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM--AKENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~--~~~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
..+++|++|||||++|||+++|++|+++|+ +|++++|+.+..+...+.+.. ...++..++||++|+++++++++++.
T Consensus 410 ~~l~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~ 488 (676)
T TIGR02632 410 KTLARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVA 488 (676)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 357899999999999999999999999995 999999998777766665542 12357789999999999999999999
Q ss_pred HcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCC
Q 018819 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (350)
+.+|++|++|||||.... .++.+.+.++|+..+++|+.+++++++.+++.|.+++. +|+||++||..+..+
T Consensus 489 ~~~g~iDilV~nAG~~~~-~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~-~g~IV~iSS~~a~~~------- 559 (676)
T TIGR02632 489 LAYGGVDIVVNNAGIATS-SPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGL-GGNIVFIASKNAVYA------- 559 (676)
T ss_pred HhcCCCcEEEECCCCCCC-CCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEeChhhcCC-------
Confidence 999999999999998643 66778889999999999999999999999999976542 369999999887653
Q ss_pred CCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCC-cccccch
Q 018819 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT-GLFREHI 318 (350)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~-~~~~~~~ 318 (350)
.++...|++||++++.+++.++.++ .+.||+||+|+||.|.|+ .++....
T Consensus 560 ----------------------------~~~~~aY~aSKaA~~~l~r~lA~el-~~~gIrVn~V~Pg~V~~~s~~~~~~~ 610 (676)
T TIGR02632 560 ----------------------------GKNASAYSAAKAAEAHLARCLAAEG-GTYGIRVNTVNPDAVLQGSGIWDGEW 610 (676)
T ss_pred ----------------------------CCCCHHHHHHHHHHHHHHHHHHHHh-cccCeEEEEEECCceecCcccccccc
Confidence 2567899999999999999999998 677999999999999753 2221110
Q ss_pred hhHHh---hh------hhh-HHhhhcCccchhhhhhhcccc
Q 018819 319 PLFRL---LF------PPF-QKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ~~~~~---~~------~~~-~~~~~~~~~s~~~~a~~i~~~ 349 (350)
...+. +. ..+ .+......++|+|+|+.+.++
T Consensus 611 ~~~~~~~~~~~~~~~~~~~~~r~~l~r~v~peDVA~av~~L 651 (676)
T TIGR02632 611 REERAAAYGIPADELEEHYAKRTLLKRHIFPADIAEAVFFL 651 (676)
T ss_pred hhhhhhcccCChHHHHHHHHhcCCcCCCcCHHHHHHHHHHH
Confidence 00000 00 001 111234568999999988754
|
|
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=210.09 Aligned_cols=182 Identities=24% Similarity=0.289 Sum_probs=161.0
Q ss_pred CCCEEEEEcCC-CchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH-cC
Q 018819 85 RKGSVIITGAS-SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR-SG 162 (350)
Q Consensus 85 ~~~~~lItGgs-~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~-~~ 162 (350)
..|.++|||++ ||||.++|++|++.| ..|+.++|..+...++.... .+..+.+|+++++++..+..++.+ .+
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G-~~V~AtaR~~e~M~~L~~~~-----gl~~~kLDV~~~~~V~~v~~evr~~~~ 79 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNG-YLVYATARRLEPMAQLAIQF-----GLKPYKLDVSKPEEVVTVSGEVRANPD 79 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCC-eEEEEEccccchHhhHHHhh-----CCeeEEeccCChHHHHHHHHHHhhCCC
Confidence 34688999987 789999999999999 59999999987776665443 378899999999999999999988 68
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
|++|+|+||||.... .+..+.+.+..+++|++|++|.+++++++...+.+.+ |.|||++|..+..
T Consensus 80 Gkld~L~NNAG~~C~-~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaK---GtIVnvgSl~~~v----------- 144 (289)
T KOG1209|consen 80 GKLDLLYNNAGQSCT-FPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAK---GTIVNVGSLAGVV----------- 144 (289)
T ss_pred CceEEEEcCCCCCcc-cccccCCHHHHHhhhccceeeeehHHHHHHHHHHHcc---ceEEEecceeEEe-----------
Confidence 999999999999765 6777899999999999999999999999997666654 8999999999885
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
|+|..+.|.+||+|+..+++.|+.|+ ++.||+|..+.||.|.|..
T Consensus 145 ------------------------pfpf~~iYsAsKAAihay~~tLrlEl-~PFgv~Vin~itGGv~T~I 189 (289)
T KOG1209|consen 145 ------------------------PFPFGSIYSASKAAIHAYARTLRLEL-KPFGVRVINAITGGVATDI 189 (289)
T ss_pred ------------------------ccchhhhhhHHHHHHHHhhhhcEEee-eccccEEEEecccceeccc
Confidence 35677899999999999999999999 8999999999999999964
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=219.00 Aligned_cols=211 Identities=18% Similarity=0.234 Sum_probs=165.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.+|+++||||++|||++++++|+++| ++|++++|+.+. .. ...++.+|++|.++++++++++.+.+ +
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G-~~v~~~~r~~~~------~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~-~ 68 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLG-HQVIGIARSAID------DF-----PGELFACDLADIEQTAATLAQINEIH-P 68 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCC-CEEEEEeCCccc------cc-----CceEEEeeCCCHHHHHHHHHHHHHhC-C
Confidence 56899999999999999999999999 589999997643 01 12468899999999999999988876 6
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
+|++|||||.... .++.+.+.++|++.+++|+.+++++.+.++|.|.+.+ .++||++||.... +
T Consensus 69 ~d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~-~------------ 132 (234)
T PRK07577 69 VDAIVNNVGIALP-QPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLRE--QGRIVNICSRAIF-G------------ 132 (234)
T ss_pred CcEEEECCCCCCC-CChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEEcccccc-C------------
Confidence 8999999998654 5666788999999999999999999999999998765 4799999998532 2
Q ss_pred cccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhh
Q 018819 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLL 324 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~ 324 (350)
.++...|++||++++.++++++.++ .+.||++++|+||+++|+++... .+.....
T Consensus 133 -----------------------~~~~~~Y~~sK~a~~~~~~~~a~e~-~~~gi~v~~i~pg~~~t~~~~~~-~~~~~~~ 187 (234)
T PRK07577 133 -----------------------ALDRTSYSAAKSALVGCTRTWALEL-AEYGITVNAVAPGPIETELFRQT-RPVGSEE 187 (234)
T ss_pred -----------------------CCCchHHHHHHHHHHHHHHHHHHHH-HhhCcEEEEEecCcccCcccccc-cccchhH
Confidence 1456789999999999999999998 56799999999999999875322 1111001
Q ss_pred h-hhhHHhhhcCccchhhhhhhcccc
Q 018819 325 F-PPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 325 ~-~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
. ....+.......+|+++|+.++++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~a~~~~~l 213 (234)
T PRK07577 188 EKRVLASIPMRRLGTPEEVAAAIAFL 213 (234)
T ss_pred HHHHhhcCCCCCCcCHHHHHHHHHHH
Confidence 1 111111123345889988887654
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=219.29 Aligned_cols=179 Identities=22% Similarity=0.257 Sum_probs=151.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
++++||||++|||++++++|+++|+ +|++++|+.+..++..+. +.++.+++||++|.++++++++++.. .+|
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~---~~d 73 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGW-QVIACGRNQSVLDELHTQ----SANIFTLAFDVTDHPGTKAALSQLPF---IPE 73 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHh----cCCCeEEEeeCCCHHHHHHHHHhccc---CCC
Confidence 6899999999999999999999995 899999987766554432 24678899999999999999887642 479
Q ss_pred EEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccc
Q 018819 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (350)
Q Consensus 167 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (350)
.+|||||.... ....+.+.++|++++++|+.|++++++.+.|.|.+ +++||++||..+..+
T Consensus 74 ~~i~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~----~~~iv~isS~~~~~~-------------- 134 (240)
T PRK06101 74 LWIFNAGDCEY-MDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSC----GHRVVIVGSIASELA-------------- 134 (240)
T ss_pred EEEEcCccccc-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhc----CCeEEEEechhhccC--------------
Confidence 99999997432 23345788999999999999999999999999865 358999999887653
Q ss_pred cccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccc
Q 018819 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (350)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~ 314 (350)
.++...|+++|++++.+++.++.|+ .++||++++|+||+|+|++..
T Consensus 135 ---------------------~~~~~~Y~asK~a~~~~~~~l~~e~-~~~gi~v~~v~pg~i~t~~~~ 180 (240)
T PRK06101 135 ---------------------LPRAEAYGASKAAVAYFARTLQLDL-RPKGIEVVTVFPGFVATPLTD 180 (240)
T ss_pred ---------------------CCCCchhhHHHHHHHHHHHHHHHHH-HhcCceEEEEeCCcCCCCCcC
Confidence 2566789999999999999999998 567999999999999998653
|
|
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=220.26 Aligned_cols=189 Identities=29% Similarity=0.374 Sum_probs=157.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhH--HHHHHHHhccCC-CceEEEEccCCC-HHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK--AERAAKSAGMAK-ENYTIMHLDLAS-LDSVRQFVDTF 158 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~--~~~~~~~l~~~~-~~v~~~~~Dvs~-~~~v~~~~~~~ 158 (350)
.+.++++|||||++|||+++|+.|+++|+ +|+++.|+.+. .+...+.....+ ..+.+..+|+++ .++++.+++.+
T Consensus 2 ~~~~~~ilITGas~GiG~aia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~~v~~~~~~~ 80 (251)
T COG1028 2 DLSGKVALVTGASSGIGRAIARALAREGA-RVVVAARRSEEEAAEALAAAIKEAGGGRAAAVAADVSDDEESVEALVAAA 80 (251)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-eEEEEcCCCchhhHHHHHHHHHhcCCCcEEEEEecCCCCHHHHHHHHHHH
Confidence 45789999999999999999999999995 77777766443 333333333222 367888899998 99999999999
Q ss_pred HHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCC
Q 018819 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (350)
Q Consensus 159 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (350)
.+.+|++|++|||||+.....++.+.+.++|++++++|+.|++.+++.+.|.+.+ . +||++||+.+. ..
T Consensus 81 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~----~-~Iv~isS~~~~-~~----- 149 (251)
T COG1028 81 EEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKK----Q-RIVNISSVAGL-GG----- 149 (251)
T ss_pred HHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhh----C-eEEEECCchhc-CC-----
Confidence 9999999999999999643236778899999999999999999999988888873 2 99999999886 42
Q ss_pred CCCCCccccccccccCCCCCCCcccCCCCCCc-hhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccc
Q 018819 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDG-AKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (350)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~ 314 (350)
++ ...|++||+|+.+|++.++.|+ .+.||++++|+||+++|++..
T Consensus 150 ------------------------------~~~~~~Y~~sK~al~~~~~~l~~e~-~~~gi~v~~v~PG~~~t~~~~ 195 (251)
T COG1028 150 ------------------------------PPGQAAYAASKAALIGLTKALALEL-APRGIRVNAVAPGYIDTPMTA 195 (251)
T ss_pred ------------------------------CCCcchHHHHHHHHHHHHHHHHHHH-hhhCcEEEEEEeccCCCcchh
Confidence 33 4899999999999999999888 677999999999999998764
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-28 Score=218.55 Aligned_cols=223 Identities=20% Similarity=0.214 Sum_probs=180.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+.++++|||||+|+||++++++|+++|+ +|++++|+.++.....+++...+.++.++.+|++|.++++++++++.+.+
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDF 81 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 35678999999999999999999999994 99999999877777777776666678999999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCC-CCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN-TNTLAGNVPPK 241 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~-~~~~~~~~~~~ 241 (350)
+++|++|||+|.... .++.+.+.++|+..+++|+.+++++.+.+.+.|.+++ .++||++||..+. .+
T Consensus 82 ~~~d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~ii~~ss~~~~~~~--------- 149 (251)
T PRK12826 82 GRLDILVANAGIFPL-TPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAG--GGRIVLTSSVAGPRVG--------- 149 (251)
T ss_pred CCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CcEEEEEechHhhccC---------
Confidence 999999999998654 5667788999999999999999999999999987765 4699999998765 21
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.++...|+.+|++++.+++.++.++ ...|+++++++||++.|++.......
T Consensus 150 --------------------------~~~~~~y~~sK~a~~~~~~~~~~~~-~~~~i~~~~i~pg~~~~~~~~~~~~~-- 200 (251)
T PRK12826 150 --------------------------YPGLAHYAASKAGLVGFTRALALEL-AARNITVNSVHPGGVDTPMAGNLGDA-- 200 (251)
T ss_pred --------------------------CCCccHHHHHHHHHHHHHHHHHHHH-HHcCeEEEEEeeCCCCcchhhhcCch--
Confidence 3566789999999999999999988 56699999999999999865321110
Q ss_pred HhhhhhhH-HhhhcCccchhhhhhhccc
Q 018819 322 RLLFPPFQ-KYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 322 ~~~~~~~~-~~~~~~~~s~~~~a~~i~~ 348 (350)
.. ...+. ......+.+++|+|+.+..
T Consensus 201 ~~-~~~~~~~~~~~~~~~~~dva~~~~~ 227 (251)
T PRK12826 201 QW-AEAIAAAIPLGRLGEPEDIAAAVLF 227 (251)
T ss_pred HH-HHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 00 00111 1112346788898887654
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=219.93 Aligned_cols=215 Identities=20% Similarity=0.236 Sum_probs=165.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHH-HHHcC---C
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDT-FRRSG---R 163 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~-~~~~~---g 163 (350)
++|||||+||||++++++|+++|+ +|++++|+.... . ....+.++.++++|++|.+++++++++ +.+.+ +
T Consensus 3 ~vlItGasggiG~~ia~~l~~~G~-~v~~~~r~~~~~--~---~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 76 (243)
T PRK07023 3 RAIVTGHSRGLGAALAEQLLQPGI-AVLGVARSRHPS--L---AAAAGERLAEVELDLSDAAAAAAWLAGDLLAAFVDGA 76 (243)
T ss_pred eEEEecCCcchHHHHHHHHHhCCC-EEEEEecCcchh--h---hhccCCeEEEEEeccCCHHHHHHHHHHHHHHHhccCC
Confidence 799999999999999999999995 888888875431 1 122345788999999999999998876 54433 4
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCC
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (350)
++|++|||||......++.+.+.++|+..+++|+.+++.+++.+.+.|.+++ .++||++||..+..+
T Consensus 77 ~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~~----------- 143 (243)
T PRK07023 77 SRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAA--ERRILHISSGAARNA----------- 143 (243)
T ss_pred CceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccC--CCEEEEEeChhhcCC-----------
Confidence 7999999999865445677789999999999999999999999999988754 479999999877642
Q ss_pred ccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccc-hhh--
Q 018819 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH-IPL-- 320 (350)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~-~~~-- 320 (350)
.+++..|+++|++++.+++.++.+ .+.||++++|+||+++|++..... .+.
T Consensus 144 ------------------------~~~~~~Y~~sK~a~~~~~~~~~~~--~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~ 197 (243)
T PRK07023 144 ------------------------YAGWSVYCATKAALDHHARAVALD--ANRALRIVSLAPGVVDTGMQATIRATDEER 197 (243)
T ss_pred ------------------------CCCchHHHHHHHHHHHHHHHHHhc--CCCCcEEEEecCCccccHHHHHHHhccccc
Confidence 357789999999999999999998 456999999999999998642100 000
Q ss_pred HHhhhhhhHHhhhcCccchhhhhhhcc
Q 018819 321 FRLLFPPFQKYITKGYVSEDEAGKRLA 347 (350)
Q Consensus 321 ~~~~~~~~~~~~~~~~~s~~~~a~~i~ 347 (350)
..............++.+|+++|+.++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~va~~~~ 224 (243)
T PRK07023 198 FPMRERFRELKASGALSTPEDAARRLI 224 (243)
T ss_pred chHHHHHHHhhhcCCCCCHHHHHHHHH
Confidence 000000111111245789999988543
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=213.40 Aligned_cols=184 Identities=15% Similarity=0.174 Sum_probs=152.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
+++||||++|||+++++.|+++ + +|++.+|+.. .++||++|++++++++++ .+++|+
T Consensus 2 ~vlItGas~giG~~la~~l~~~-~-~vi~~~r~~~-----------------~~~~D~~~~~~~~~~~~~----~~~id~ 58 (199)
T PRK07578 2 KILVIGASGTIGRAVVAELSKR-H-EVITAGRSSG-----------------DVQVDITDPASIRALFEK----VGKVDA 58 (199)
T ss_pred eEEEEcCCcHHHHHHHHHHHhc-C-cEEEEecCCC-----------------ceEecCCChHHHHHHHHh----cCCCCE
Confidence 6999999999999999999998 4 8999988742 368999999999998875 368999
Q ss_pred EEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcccc
Q 018819 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (350)
Q Consensus 168 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (350)
+|||||.... .++.+.+.++|++.+++|+.+++++++++.|+|.+ .|+|+++||..+..+
T Consensus 59 lv~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~----~g~iv~iss~~~~~~--------------- 118 (199)
T PRK07578 59 VVSAAGKVHF-APLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLND----GGSFTLTSGILSDEP--------------- 118 (199)
T ss_pred EEECCCCCCC-CchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCeEEEEcccccCCC---------------
Confidence 9999998543 66778899999999999999999999999999975 369999999887642
Q ss_pred ccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhhhhh
Q 018819 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPP 327 (350)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~ 327 (350)
.++...|+++|++++++++.++.|+ ++||++++|+||+++|++.... +.
T Consensus 119 --------------------~~~~~~Y~~sK~a~~~~~~~la~e~--~~gi~v~~i~Pg~v~t~~~~~~-----~~---- 167 (199)
T PRK07578 119 --------------------IPGGASAATVNGALEGFVKAAALEL--PRGIRINVVSPTVLTESLEKYG-----PF---- 167 (199)
T ss_pred --------------------CCCchHHHHHHHHHHHHHHHHHHHc--cCCeEEEEEcCCcccCchhhhh-----hc----
Confidence 3577899999999999999999998 5699999999999999753110 00
Q ss_pred hHHhhhcCccchhhhhhhccc
Q 018819 328 FQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 328 ~~~~~~~~~~s~~~~a~~i~~ 348 (350)
.......+|+++|+.++.
T Consensus 168 ---~~~~~~~~~~~~a~~~~~ 185 (199)
T PRK07578 168 ---FPGFEPVPAARVALAYVR 185 (199)
T ss_pred ---CCCCCCCCHHHHHHHHHH
Confidence 011235788888886653
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-28 Score=215.99 Aligned_cols=223 Identities=22% Similarity=0.251 Sum_probs=174.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChh-HHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL-KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~-~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
.++++++|||||+|+||++++++|+++|+ +|+++.|+.. ..+...+++...+.++.++.+|++|.+++.++++++.+.
T Consensus 2 ~~~~~~vlItG~sg~iG~~l~~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (248)
T PRK05557 2 SLEGKVALVTGASRGIGRAIAERLAAQGA-NVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAE 80 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 45788999999999999999999999995 7766666543 345555556555678899999999999999999999998
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|++|||||.... ..+.+.+.+.+++.+++|+.+++++.+++.+.+.+.+ .++||++||..+..+.
T Consensus 81 ~~~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~~v~iss~~~~~~~-------- 149 (248)
T PRK05557 81 FGGVDILVNNAGITRD-NLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQR--SGRIINISSVVGLMGN-------- 149 (248)
T ss_pred cCCCCEEEECCCcCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CeEEEEEcccccCcCC--------
Confidence 8999999999998654 5566788999999999999999999999999987654 3589999998776432
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
++...|+++|++++.+++.++.++ ...++++++++||+++|++.... .+..
T Consensus 150 ---------------------------~~~~~y~~sk~a~~~~~~~~a~~~-~~~~i~~~~v~pg~~~~~~~~~~-~~~~ 200 (248)
T PRK05557 150 ---------------------------PGQANYAASKAGVIGFTKSLAREL-ASRGITVNAVAPGFIETDMTDAL-PEDV 200 (248)
T ss_pred ---------------------------CCCchhHHHHHHHHHHHHHHHHHh-hhhCeEEEEEecCccCCcccccc-ChHH
Confidence 456789999999999999999988 56699999999999998764221 1100
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhccc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
. .............+++++++.+.+
T Consensus 201 ~--~~~~~~~~~~~~~~~~~va~~~~~ 225 (248)
T PRK05557 201 K--EAILAQIPLGRLGQPEEIASAVAF 225 (248)
T ss_pred H--HHHHhcCCCCCCcCHHHHHHHHHH
Confidence 0 000001112335688888877654
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-28 Score=216.05 Aligned_cols=223 Identities=19% Similarity=0.236 Sum_probs=175.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEec-ChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r-~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
++++++|||||+|+||++++++|+++|+ +|++..| +....+...+.+...+.++.++.||++|.+++.++++++.+.+
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 82 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGA-DVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVERF 82 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHHHHc
Confidence 4567999999999999999999999995 6666555 4444555555555556678999999999999999999998888
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|++|||||.... ..+.+.+.++|+..+++|+.+++++++.+.+.+.+.+ .++||++||..+..+
T Consensus 83 ~~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~~i~~SS~~~~~~---------- 149 (249)
T PRK12825 83 GRIDILVNNAGIFED-KPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQR--GGRIVNISSVAGLPG---------- 149 (249)
T ss_pred CCCCEEEECCccCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CCEEEEECccccCCC----------
Confidence 899999999997543 5666788999999999999999999999999987765 469999999887643
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.++...|+.+|++++.+++.++.++ .+.|+++++|+||++.|++......+..
T Consensus 150 -------------------------~~~~~~y~~sK~~~~~~~~~~~~~~-~~~~i~~~~i~pg~~~~~~~~~~~~~~~- 202 (249)
T PRK12825 150 -------------------------WPGRSNYAAAKAGLVGLTKALAREL-AEYGITVNMVAPGDIDTDMKEATIEEAR- 202 (249)
T ss_pred -------------------------CCCchHHHHHHHHHHHHHHHHHHHH-hhcCeEEEEEEECCccCCccccccchhH-
Confidence 2456789999999999999999998 5669999999999999987543221111
Q ss_pred hhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 323 LLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.. . ........+.+++++++.+.++
T Consensus 203 ~~-~-~~~~~~~~~~~~~dva~~~~~~ 227 (249)
T PRK12825 203 EA-K-DAETPLGRSGTPEDIARAVAFL 227 (249)
T ss_pred Hh-h-hccCCCCCCcCHHHHHHHHHHH
Confidence 10 0 0011123467888888877653
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-28 Score=213.95 Aligned_cols=189 Identities=29% Similarity=0.352 Sum_probs=163.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+.+++++||||+|+||.+++++|+++|+ +|++++|+.+..++..+++... .++.++.+|++|.+++.++++++.+.+
T Consensus 3 ~~~~~~ilItGatg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (237)
T PRK07326 3 SLKGKVALITGGSKGIGFAIAEALLAEGY-KVAITARDQKELEEAAAELNNK-GNVLGLAADVRDEADVQRAVDAIVAAF 80 (237)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHHHHHHhcc-CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 45688999999999999999999999995 8999999987777777766543 568899999999999999999999888
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|++|||+|.... ..+.+.+.+++++.+++|+.+++++++++++.+.+. .++||++||..+..+
T Consensus 81 ~~~d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~---~~~iv~~ss~~~~~~---------- 146 (237)
T PRK07326 81 GGLDVLIANAGVGHF-APVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRG---GGYIINISSLAGTNF---------- 146 (237)
T ss_pred CCCCEEEECCCCCCC-CchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHC---CeEEEEECChhhccC----------
Confidence 999999999998643 566778999999999999999999999999988432 369999999876532
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.++...|+.+|+++..+++.++.++ ...|+++++|+||++.|+..
T Consensus 147 -------------------------~~~~~~y~~sk~a~~~~~~~~~~~~-~~~gi~v~~v~pg~~~t~~~ 191 (237)
T PRK07326 147 -------------------------FAGGAAYNASKFGLVGFSEAAMLDL-RQYGIKVSTIMPGSVATHFN 191 (237)
T ss_pred -------------------------CCCCchHHHHHHHHHHHHHHHHHHh-cccCcEEEEEeeccccCccc
Confidence 2456789999999999999999998 56799999999999999754
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.9e-28 Score=217.04 Aligned_cols=191 Identities=27% Similarity=0.320 Sum_probs=163.4
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.++++++|||||+|+||+.++++|+++|+ +|++++|+.+..++..+..... ++.++.+|++|++++.++++++.+.+
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGA-RVHVCDVSEAALAATAARLPGA--KVTATVADVADPAQVERVFDTAVERF 84 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcC--ceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 46889999999999999999999999995 8999999877666665554322 57889999999999999999999888
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|+||||||.......+.+.+.++|++++++|+.+++++++.+.+.+...+. +++|+++||.++..+
T Consensus 85 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~~vv~~ss~~~~~~---------- 153 (264)
T PRK12829 85 GGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGH-GGVIIALSSVAGRLG---------- 153 (264)
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-CeEEEEecccccccC----------
Confidence 999999999998744456677889999999999999999999999998876541 157999998776543
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.+++..|+.+|++++.+++.++.++ ...++++++|+||++.|++.
T Consensus 154 -------------------------~~~~~~y~~~K~a~~~~~~~l~~~~-~~~~i~~~~l~pg~v~~~~~ 198 (264)
T PRK12829 154 -------------------------YPGRTPYAASKWAVVGLVKSLAIEL-GPLGIRVNAILPGIVRGPRM 198 (264)
T ss_pred -------------------------CCCCchhHHHHHHHHHHHHHHHHHH-hhcCeEEEEEecCCcCChHH
Confidence 2456789999999999999999998 56699999999999999865
|
|
| >KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-28 Score=215.06 Aligned_cols=217 Identities=25% Similarity=0.332 Sum_probs=187.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccC--CCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~--~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+.++||||++|||+++|.++..+|+ .|-++.|+..++.++.++++.. -.++.+..+|+.|.+++..+++++.+..++
T Consensus 34 ~hi~itggS~glgl~la~e~~~~ga-~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~~~ 112 (331)
T KOG1210|consen 34 RHILITGGSSGLGLALALECKREGA-DVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLEGP 112 (331)
T ss_pred ceEEEecCcchhhHHHHHHHHHccC-ceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhccCC
Confidence 5899999999999999999999996 9999999999999988887532 223789999999999999999999999999
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
+|.+|+|||...+ +.+.+.+.++++..+++|++|+++++++.++.|++... .|+|+++||.++..+
T Consensus 113 ~d~l~~cAG~~v~-g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~-~g~I~~vsS~~a~~~------------ 178 (331)
T KOG1210|consen 113 IDNLFCCAGVAVP-GLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREH-LGRIILVSSQLAMLG------------ 178 (331)
T ss_pred cceEEEecCcccc-cccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhcccc-CcEEEEehhhhhhcC------------
Confidence 9999999999755 88999999999999999999999999999999988653 469999999998864
Q ss_pred cccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhh
Q 018819 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLL 324 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~ 324 (350)
+.+.++|+++|+|+.+++..+++|+ .+.||+|....|+.++||++-+++..
T Consensus 179 -----------------------i~GysaYs~sK~alrgLa~~l~qE~-i~~~v~Vt~~~P~~~~tpGfE~En~t----- 229 (331)
T KOG1210|consen 179 -----------------------IYGYSAYSPSKFALRGLAEALRQEL-IKYGVHVTLYYPPDTLTPGFERENKT----- 229 (331)
T ss_pred -----------------------cccccccccHHHHHHHHHHHHHHHH-hhcceEEEEEcCCCCCCCcccccccc-----
Confidence 5789999999999999999999999 56799999999999999988654432
Q ss_pred hhhhHHhhh--cCccchhhhhhhcc
Q 018819 325 FPPFQKYIT--KGYVSEDEAGKRLA 347 (350)
Q Consensus 325 ~~~~~~~~~--~~~~s~~~~a~~i~ 347 (350)
.|...+.+. ....++||+|..++
T Consensus 230 kP~~t~ii~g~ss~~~~e~~a~~~~ 254 (331)
T KOG1210|consen 230 KPEETKIIEGGSSVIKCEEMAKAIV 254 (331)
T ss_pred CchheeeecCCCCCcCHHHHHHHHH
Confidence 233333332 44578888888765
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.6e-28 Score=214.46 Aligned_cols=223 Identities=22% Similarity=0.271 Sum_probs=179.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+.++++|||||+|+||..++++|+++|. .|++++|+..+.+....++...+.++.++.||++|++++.++++++.+.+
T Consensus 2 ~~~~~~ilItGasg~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (246)
T PRK05653 2 SLQGKTALVTGASRGIGRAIALRLAADGA-KVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAF 80 (246)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 45678999999999999999999999995 89999999887777777776667789999999999999999999998888
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|++|||+|.... .++.+.+.++|+..++.|+.+++++++.+.+.+.+.+ .++||++||..+..+
T Consensus 81 ~~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--~~~ii~~ss~~~~~~---------- 147 (246)
T PRK05653 81 GALDILVNNAGITRD-ALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKAR--YGRIVNISSVSGVTG---------- 147 (246)
T ss_pred CCCCEEEECCCcCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEECcHHhccC----------
Confidence 999999999998644 5666788999999999999999999999999987654 369999999876542
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.++...|+.+|++++.+++.+++++ .+.|+++++|+||.+.+++... ....
T Consensus 148 -------------------------~~~~~~y~~sk~~~~~~~~~l~~~~-~~~~i~~~~i~pg~~~~~~~~~-~~~~-- 198 (246)
T PRK05653 148 -------------------------NPGQTNYSAAKAGVIGFTKALALEL-ASRGITVNAVAPGFIDTDMTEG-LPEE-- 198 (246)
T ss_pred -------------------------CCCCcHhHhHHHHHHHHHHHHHHHH-hhcCeEEEEEEeCCcCCcchhh-hhHH--
Confidence 2456789999999999999999988 5669999999999999986521 0110
Q ss_pred hhhhhhHH-hhhcCccchhhhhhhcccc
Q 018819 323 LLFPPFQK-YITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~~-~~~~~~~s~~~~a~~i~~~ 349 (350)
....... .....+.+++++++.+.++
T Consensus 199 -~~~~~~~~~~~~~~~~~~dva~~~~~~ 225 (246)
T PRK05653 199 -VKAEILKEIPLGRLGQPEEVANAVAFL 225 (246)
T ss_pred -HHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 0000101 1113457788888876653
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-28 Score=215.15 Aligned_cols=218 Identities=22% Similarity=0.238 Sum_probs=170.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
++++++++||||++|||+++++.|+++|+ +|++++|+.++.++..+.. .+.++.+|++|.++++++++. .
T Consensus 6 ~~~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~----~ 75 (245)
T PRK07060 6 DFSGKSVLVTGASSGIGRACAVALAQRGA-RVVAAARNAAALDRLAGET-----GCEPLRLDVGDDAAIRAALAA----A 75 (245)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh-----CCeEEEecCCCHHHHHHHHHH----h
Confidence 46889999999999999999999999995 8999999977666554443 256788999999998887775 4
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|++|||||.... ....+.+.++|++.+++|+.+++++++++.+.+.+... .++||++||..+..+
T Consensus 76 ~~~d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~~iv~~sS~~~~~~---------- 143 (245)
T PRK07060 76 GAFDGLVNCAGIASL-ESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGR-GGSIVNVSSQAALVG---------- 143 (245)
T ss_pred CCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-CcEEEEEccHHHcCC----------
Confidence 689999999998643 55567789999999999999999999999998875431 369999999887643
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.++...|+.+|++++.+++.++.++ .+.||++++++||++.|++....... ..
T Consensus 144 -------------------------~~~~~~y~~sK~a~~~~~~~~a~~~-~~~~i~v~~v~pg~v~~~~~~~~~~~-~~ 196 (245)
T PRK07060 144 -------------------------LPDHLAYCASKAALDAITRVLCVEL-GPHGIRVNSVNPTVTLTPMAAEAWSD-PQ 196 (245)
T ss_pred -------------------------CCCCcHhHHHHHHHHHHHHHHHHHH-hhhCeEEEEEeeCCCCCchhhhhccC-HH
Confidence 2456789999999999999999998 56799999999999999864321111 11
Q ss_pred hhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 323 LLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
...+.........+.+++|+++.+..+
T Consensus 197 ~~~~~~~~~~~~~~~~~~d~a~~~~~l 223 (245)
T PRK07060 197 KSGPMLAAIPLGRFAEVDDVAAPILFL 223 (245)
T ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 111222222335578999999887653
|
|
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=217.97 Aligned_cols=191 Identities=22% Similarity=0.306 Sum_probs=164.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhcc-CCCceEEEEccCCCHHHH-HHHHHHHHHcCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-AKENYTIMHLDLASLDSV-RQFVDTFRRSGR 163 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~-~~~~v~~~~~Dvs~~~~v-~~~~~~~~~~~g 163 (350)
|++++||||+.|||++.|++||++| .+|++++|++++++...+++.+ .+.++.++.+|.++.+.+ +++.+.+. . .
T Consensus 49 g~WAVVTGaTDGIGKayA~eLAkrG-~nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~-~-~ 125 (312)
T KOG1014|consen 49 GSWAVVTGATDGIGKAYARELAKRG-FNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLA-G-L 125 (312)
T ss_pred CCEEEEECCCCcchHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhc-C-C
Confidence 4899999999999999999999999 6999999999999999999854 457899999999988763 33333332 2 3
Q ss_pred CCcEEEEccccCCC-CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 164 PLDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 164 ~id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+|.+||||+|...+ +..+.+.+.+.+++.+++|+.++..+++.++|.|.+++ +|-|||+||.+|..+
T Consensus 126 ~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~--~G~IvnigS~ag~~p---------- 193 (312)
T KOG1014|consen 126 DVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERK--KGIIVNIGSFAGLIP---------- 193 (312)
T ss_pred ceEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCC--CceEEEecccccccc----------
Confidence 68889999999762 35677788888999999999999999999999999876 689999999999863
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccc
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~ 317 (350)
+|.++.|++||+.++.|+++|..|| +.+||.|-+|.|+.|.|+|..-..
T Consensus 194 -------------------------~p~~s~ysasK~~v~~~S~~L~~Ey-~~~gI~Vq~v~p~~VaTkm~~~~~ 242 (312)
T KOG1014|consen 194 -------------------------TPLLSVYSASKAFVDFFSRCLQKEY-ESKGIFVQSVIPYLVATKMAKYRK 242 (312)
T ss_pred -------------------------ChhHHHHHHHHHHHHHHHHHHHHHH-HhcCeEEEEeehhheeccccccCC
Confidence 5889999999999999999999999 778999999999999999864433
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-28 Score=215.35 Aligned_cols=206 Identities=19% Similarity=0.226 Sum_probs=156.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC-cEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 87 GSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga-~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
++++||||++|||+++|++|+++|. ..|++..|+.... . .+.++.+++||++|.++++++. +.++++
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~------~--~~~~~~~~~~Dls~~~~~~~~~----~~~~~i 68 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD------F--QHDNVQWHALDVTDEAEIKQLS----EQFTQL 68 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc------c--ccCceEEEEecCCCHHHHHHHH----HhcCCC
Confidence 3799999999999999999999852 2566666654221 1 2346889999999999988854 345789
Q ss_pred cEEEEccccCCC-----CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 166 DVLVCNAAVYLP-----TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 166 d~lv~~Ag~~~~-----~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
|++|||||.... ...+.+.+.+.|++.+++|+.+++.+++.++|.|.+++ .++|+++||..+....
T Consensus 69 d~li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~--~~~i~~iss~~~~~~~------- 139 (235)
T PRK09009 69 DWLINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSE--SAKFAVISAKVGSISD------- 139 (235)
T ss_pred CEEEECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccC--CceEEEEeeccccccc-------
Confidence 999999998642 23566788899999999999999999999999997764 4689999987654210
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcC-CCCcEEEEeeCCcccCCcccccchh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE-ETGIAFASLYPGCIATTGLFREHIP 319 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~-~~gi~v~~v~PG~v~t~~~~~~~~~ 319 (350)
.+.+++..|+++|++++.|+++++.|+.. ..+|+|++|+||+|+|++...-
T Consensus 140 -------------------------~~~~~~~~Y~asK~a~~~~~~~la~e~~~~~~~i~v~~v~PG~v~t~~~~~~--- 191 (235)
T PRK09009 140 -------------------------NRLGGWYSYRASKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTALSKPF--- 191 (235)
T ss_pred -------------------------CCCCCcchhhhhHHHHHHHHHHHHHHhhcccCCeEEEEEcccceecCCCcch---
Confidence 01356679999999999999999999842 2699999999999999875320
Q ss_pred hHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
. .........+||++|+.++++
T Consensus 192 --~------~~~~~~~~~~~~~~a~~~~~l 213 (235)
T PRK09009 192 --Q------QNVPKGKLFTPEYVAQCLLGI 213 (235)
T ss_pred --h------hccccCCCCCHHHHHHHHHHH
Confidence 0 001123357888888877653
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=240.99 Aligned_cols=227 Identities=20% Similarity=0.259 Sum_probs=183.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+.+|++|||||+||||++++++|+++|+ +|++++|+.+..+...+++... .++.++.||++|+++++++++++.+.+
T Consensus 419 ~l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~-~~v~~v~~Dvtd~~~v~~~~~~~~~~~ 496 (681)
T PRK08324 419 PLAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGP-DRALGVACDVTDEAAVQAAFEEAALAF 496 (681)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhcc-CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 46889999999999999999999999996 8999999988877777766543 478899999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
|++|++|||||.... .++.+.+.++|+..+++|+.|++.+++.+.+.|.+++. +|+||++||..+..+
T Consensus 497 g~iDvvI~~AG~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~-~g~iV~vsS~~~~~~---------- 564 (681)
T PRK08324 497 GGVDIVVSNAGIAIS-GPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGL-GGSIVFIASKNAVNP---------- 564 (681)
T ss_pred CCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CcEEEEECCccccCC----------
Confidence 999999999998654 67778899999999999999999999999999987542 379999999887643
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcc--cCCcccccchhh
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI--ATTGLFREHIPL 320 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v--~t~~~~~~~~~~ 320 (350)
.++...|++||++++.+++.++.++ .+.||++|+|+||.| .|+++.......
T Consensus 565 -------------------------~~~~~~Y~asKaa~~~l~~~la~e~-~~~gIrvn~v~Pg~v~~~t~~~~~~~~~~ 618 (681)
T PRK08324 565 -------------------------GPNFGAYGAAKAAELHLVRQLALEL-GPDGIRVNGVNPDAVVRGSGIWTGEWIEA 618 (681)
T ss_pred -------------------------CCCcHHHHHHHHHHHHHHHHHHHHh-cccCeEEEEEeCceeecCCccccchhhhh
Confidence 2567899999999999999999998 677999999999999 776543221110
Q ss_pred --HHhhhh------hhH-HhhhcCccchhhhhhhcccc
Q 018819 321 --FRLLFP------PFQ-KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 --~~~~~~------~~~-~~~~~~~~s~~~~a~~i~~~ 349 (350)
...+.+ .+. .......+.++++|+.++++
T Consensus 619 ~~~~~g~~~~~~~~~~~~~~~l~~~v~~~DvA~a~~~l 656 (681)
T PRK08324 619 RAAAYGLSEEELEEFYRARNLLKREVTPEDVAEAVVFL 656 (681)
T ss_pred hhhhccCChHHHHHHHHhcCCcCCccCHHHHHHHHHHH
Confidence 000011 011 11124568899999887653
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=214.04 Aligned_cols=188 Identities=25% Similarity=0.271 Sum_probs=163.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
+|++|||||+|+||++++++|+++|+ +|++++|+.+..+++.+++...+.++.++.+|++|.++++++++.+.+.++++
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 79 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGA-NVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGL 79 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 46899999999999999999999995 99999999877777776665555678999999999999999999999888899
Q ss_pred cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcc
Q 018819 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (350)
|++|||||.... ....+.+.+++++++++|+.|++.+++.+++.|.+.+ .++||++||..+..+
T Consensus 80 d~vi~~a~~~~~-~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~--~~~~v~~ss~~~~~~------------- 143 (255)
T TIGR01963 80 DILVNNAGIQHV-APIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQG--WGRIINIASAHGLVA------------- 143 (255)
T ss_pred CEEEECCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CeEEEEEcchhhcCC-------------
Confidence 999999998643 4555678899999999999999999999999987654 469999999876643
Q ss_pred ccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.+....|+.+|++++.+++.++.++ ...+|++++++||++.|++.
T Consensus 144 ----------------------~~~~~~y~~sk~a~~~~~~~~~~~~-~~~~i~v~~i~pg~v~~~~~ 188 (255)
T TIGR01963 144 ----------------------SPFKSAYVAAKHGLIGLTKVLALEV-AAHGITVNAICPGYVRTPLV 188 (255)
T ss_pred ----------------------CCCCchhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecCccccHHH
Confidence 2456789999999999999999987 55699999999999999864
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=211.39 Aligned_cols=190 Identities=24% Similarity=0.250 Sum_probs=162.6
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+.+++|++|||||+|+||++++++|+++|+ +|++++|+.++..+..+++... .+.++.+|++|.++++++++++.+.
T Consensus 3 ~~~~~k~vlItGatg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (239)
T PRK12828 3 HSLQGKVVAITGGFGGLGRATAAWLAARGA-RVALIGRGAAPLSQTLPGVPAD--ALRIGGIDLVDPQAARRAVDEVNRQ 79 (239)
T ss_pred CCCCCCEEEEECCCCcHhHHHHHHHHHCCC-eEEEEeCChHhHHHHHHHHhhc--CceEEEeecCCHHHHHHHHHHHHHH
Confidence 356789999999999999999999999995 8999999877666655555433 4567789999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|++||++|.... ..+.+.+.+++++.+++|+.+++.+++++.+.+.+++ .++||++||..+..+
T Consensus 80 ~~~~d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~~sS~~~~~~--------- 147 (239)
T PRK12828 80 FGRLDALVNIAGAFVW-GTIADGDADTWDRMYGVNVKTTLNASKAALPALTASG--GGRIVNIGAGAALKA--------- 147 (239)
T ss_pred hCCcCEEEECCcccCc-CChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcC--CCEEEEECchHhccC---------
Confidence 9999999999998643 4556778999999999999999999999999987655 469999999887642
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.++...|+.+|++++.+++.++.++ .+.||++++++||++.|++.
T Consensus 148 --------------------------~~~~~~y~~sk~a~~~~~~~~a~~~-~~~~i~~~~i~pg~v~~~~~ 192 (239)
T PRK12828 148 --------------------------GPGMGAYAAAKAGVARLTEALAAEL-LDRGITVNAVLPSIIDTPPN 192 (239)
T ss_pred --------------------------CCCcchhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecCcccCcch
Confidence 2466789999999999999999987 56699999999999999853
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=213.53 Aligned_cols=182 Identities=22% Similarity=0.221 Sum_probs=156.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
++++|||||+||||++++++|+++|+ +|++++|+.+..++..+.....+.++.++.+|++|++++.++++ +++
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------~~i 74 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAE------WDV 74 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhc------CCC
Confidence 46899999999999999999999995 89999998777666666555556678899999999998877654 379
Q ss_pred cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcc
Q 018819 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (350)
|+||||||.... .++.+.+.++|+..+++|+.+++.+++.+++.+.+.+ .++||++||..+..+
T Consensus 75 d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~~SS~~~~~~------------- 138 (257)
T PRK09291 75 DVLLNNAGIGEA-GAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARG--KGKVVFTSSMAGLIT------------- 138 (257)
T ss_pred CEEEECCCcCCC-cCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CceEEEEcChhhccC-------------
Confidence 999999998643 6777889999999999999999999999999988765 379999999877643
Q ss_pred ccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.++...|++||++++.+++.++.++ .+.||++++|+||++.|++.
T Consensus 139 ----------------------~~~~~~Y~~sK~a~~~~~~~l~~~~-~~~gi~~~~v~pg~~~t~~~ 183 (257)
T PRK09291 139 ----------------------GPFTGAYCASKHALEAIAEAMHAEL-KPFGIQVATVNPGPYLTGFN 183 (257)
T ss_pred ----------------------CCCcchhHHHHHHHHHHHHHHHHHH-HhcCcEEEEEecCcccccch
Confidence 2456789999999999999999988 56799999999999998753
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=210.58 Aligned_cols=183 Identities=21% Similarity=0.261 Sum_probs=157.0
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+.+.+++++||||+|+||+++|++|+++|+.+|++++|+.++.++ .+.++.++.+|++|.++++++++.
T Consensus 2 ~~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~-------~~~~~~~~~~D~~~~~~~~~~~~~---- 70 (238)
T PRK08264 2 MDIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD-------LGPRVVPLQLDVTDPASVAAAAEA---- 70 (238)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh-------cCCceEEEEecCCCHHHHHHHHHh----
Confidence 456889999999999999999999999995489999998765443 345788999999999999887765
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|++|||+|.......+.+.+.++|+..+++|+.+++.+++++.+.+.+.+ .++||++||..+..+
T Consensus 71 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~~v~~sS~~~~~~--------- 139 (238)
T PRK08264 71 ASDVTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANG--GGAIVNVLSVLSWVN--------- 139 (238)
T ss_pred cCCCCEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCEEEEEcChhhccC---------
Confidence 368999999999844446777889999999999999999999999999987654 479999999877642
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.++...|+.+|++++.+++.++.++ .+.|+++++++||.++|++.
T Consensus 140 --------------------------~~~~~~y~~sK~a~~~~~~~l~~~~-~~~~i~~~~v~pg~v~t~~~ 184 (238)
T PRK08264 140 --------------------------FPNLGTYSASKAAAWSLTQALRAEL-APQGTRVLGVHPGPIDTDMA 184 (238)
T ss_pred --------------------------CCCchHhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeCCccccccc
Confidence 3566789999999999999999998 56799999999999999864
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-27 Score=209.68 Aligned_cols=221 Identities=16% Similarity=0.193 Sum_probs=169.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC-hhHHHHHHHHhccC-CCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD-FLKAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~-~~~~~~~~~~l~~~-~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+.++++|||||+|+||++++++|+++|+ +|++++|+ ....+...+.+... +..+.++.+|++|.+++..+++.+.+.
T Consensus 4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (249)
T PRK09135 4 DSAKVALITGGARRIGAAIARTLHAAGY-RVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAA 82 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999999995 88888885 34444444444322 345788999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|++|||||.... .++.+.+.++|+.++++|+.|++++.+++.+.+.+.. +.+++++|..+..
T Consensus 83 ~~~~d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~---------- 148 (249)
T PRK09135 83 FGRLDALVNNASSFYP-TPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQR---GAIVNITDIHAER---------- 148 (249)
T ss_pred cCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCC---eEEEEEeChhhcC----------
Confidence 9999999999998644 5566778899999999999999999999999887643 6888887754432
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
+.++...|+.||++++.+++.++.++ .+ ++++++|+||++.||+......+..
T Consensus 149 -------------------------~~~~~~~Y~~sK~~~~~~~~~l~~~~-~~-~i~~~~v~pg~~~~~~~~~~~~~~~ 201 (249)
T PRK09135 149 -------------------------PLKGYPVYCAAKAALEMLTRSLALEL-AP-EVRVNAVAPGAILWPEDGNSFDEEA 201 (249)
T ss_pred -------------------------CCCCchhHHHHHHHHHHHHHHHHHHH-CC-CCeEEEEEeccccCccccccCCHHH
Confidence 24567899999999999999999998 33 7999999999999987422111111
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhccc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
. .....+.......+++|+++.+.+
T Consensus 202 ~--~~~~~~~~~~~~~~~~d~a~~~~~ 226 (249)
T PRK09135 202 R--QAILARTPLKRIGTPEDIAEAVRF 226 (249)
T ss_pred H--HHHHhcCCcCCCcCHHHHHHHHHH
Confidence 0 001111112334578898887743
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=214.35 Aligned_cols=220 Identities=21% Similarity=0.215 Sum_probs=166.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh-hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~-~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
.+++|+++||||+||||+++++.|+++|+ +|++++|+. ...+...++++..+.++.++.+|++|++++.++++++.+.
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREE 81 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 35788999999999999999999999994 888888875 3455555555545567889999999999999999999888
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|++|||||.... . . .+++..+++|+.+++++++++.|.|.+ .++||++||..+....
T Consensus 82 ~~~~d~vi~~ag~~~~-~---~---~~~~~~~~vn~~~~~~l~~~~~~~~~~----~~~iv~isS~~~~~~~-------- 142 (248)
T PRK07806 82 FGGLDALVLNASGGME-S---G---MDEDYAMRLNRDAQRNLARAALPLMPA----GSRVVFVTSHQAHFIP-------- 142 (248)
T ss_pred CCCCcEEEECCCCCCC-C---C---CCcceeeEeeeHHHHHHHHHHHhhccC----CceEEEEeCchhhcCc--------
Confidence 8899999999986422 1 1 124678999999999999999998854 3599999996543110
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccc---cch
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR---EHI 318 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~---~~~ 318 (350)
...+.+.+..|++||++++.+++.++.++ +..||++++|+||++.|+.... ...
T Consensus 143 ----------------------~~~~~~~~~~Y~~sK~a~e~~~~~l~~~~-~~~~i~v~~v~pg~~~~~~~~~~~~~~~ 199 (248)
T PRK07806 143 ----------------------TVKTMPEYEPVARSKRAGEDALRALRPEL-AEKGIGFVVVSGDMIEGTVTATLLNRLN 199 (248)
T ss_pred ----------------------cccCCccccHHHHHHHHHHHHHHHHHHHh-hccCeEEEEeCCccccCchhhhhhccCC
Confidence 00112446789999999999999999999 6779999999999999875321 111
Q ss_pred hhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
|. . .. -.+.....+.+|+|+++.++.+
T Consensus 200 ~~--~-~~-~~~~~~~~~~~~~dva~~~~~l 226 (248)
T PRK07806 200 PG--A-IE-ARREAAGKLYTVSEFAAEVARA 226 (248)
T ss_pred HH--H-HH-HHHhhhcccCCHHHHHHHHHHH
Confidence 10 0 00 1112234678999999887653
|
|
| >KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-29 Score=202.36 Aligned_cols=192 Identities=25% Similarity=0.267 Sum_probs=165.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
..+|-+.|||||.+|+|++.|++|+++|| .|++.+-...+.++..+++ |.++.+...|+++++++..++...+.+|
T Consensus 6 s~kglvalvtggasglg~ataerlakqga-sv~lldlp~skg~~vakel---g~~~vf~padvtsekdv~aala~ak~kf 81 (260)
T KOG1199|consen 6 STKGLVALVTGGASGLGKATAERLAKQGA-SVALLDLPQSKGADVAKEL---GGKVVFTPADVTSEKDVRAALAKAKAKF 81 (260)
T ss_pred hhcCeeEEeecCcccccHHHHHHHHhcCc-eEEEEeCCcccchHHHHHh---CCceEEeccccCcHHHHHHHHHHHHhhc
Confidence 34778999999999999999999999997 8888888777777777766 5789999999999999999999999999
Q ss_pred CCCcEEEEccccCCCCC-----CCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCC----CCCCeEEEEeccCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTA-----KEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSD----YPSKRLIIVGSITGNTNT 233 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~-----~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~----~~~g~iV~vSS~~~~~~~ 233 (350)
|++|.+|||||+....+ .-...+.|++++++++|+.|+|++++.-...|-+.. ...|.||+..|+++.-|
T Consensus 82 grld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaafdg- 160 (260)
T KOG1199|consen 82 GRLDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAFDG- 160 (260)
T ss_pred cceeeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeeeecC-
Confidence 99999999999864321 222457899999999999999999999888875432 23578999999998754
Q ss_pred CCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 234 LAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
..++.+|++||.++.+++--+++++ ...|||+++|.||..+||++
T Consensus 161 ----------------------------------q~gqaaysaskgaivgmtlpiardl-a~~gir~~tiapglf~tpll 205 (260)
T KOG1199|consen 161 ----------------------------------QTGQAAYSASKGAIVGMTLPIARDL-AGDGIRFNTIAPGLFDTPLL 205 (260)
T ss_pred ----------------------------------ccchhhhhcccCceEeeechhhhhc-ccCceEEEeecccccCChhh
Confidence 2589999999999999999999999 67899999999999999986
Q ss_pred c
Q 018819 314 F 314 (350)
Q Consensus 314 ~ 314 (350)
.
T Consensus 206 s 206 (260)
T KOG1199|consen 206 S 206 (260)
T ss_pred h
Confidence 3
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=209.49 Aligned_cols=207 Identities=16% Similarity=0.197 Sum_probs=160.7
Q ss_pred EEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcEEE
Q 018819 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLV 169 (350)
Q Consensus 90 lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~lv 169 (350)
|||||++|||++++++|+++|+ +|++++|+.+..+...++++. +.++.++.||++|+++++++++++ +++|++|
T Consensus 1 lItGas~~iG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~----~~id~li 74 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGA-RVTIASRSRDRLAAAARALGG-GAPVRTAALDITDEAAVDAFFAEA----GPFDHVV 74 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhc-CCceEEEEccCCCHHHHHHHHHhc----CCCCEEE
Confidence 6999999999999999999995 899999998777766666542 557889999999999999988763 6899999
Q ss_pred EccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcccccc
Q 018819 170 CNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRG 249 (350)
Q Consensus 170 ~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~ 249 (350)
||+|.... .++.+.+.++|++++++|+.+++++++ .+.+.+ .|+||++||..+..+
T Consensus 75 ~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~--~~~~~~----~g~iv~~ss~~~~~~----------------- 130 (230)
T PRK07041 75 ITAADTPG-GPVRALPLAAAQAAMDSKFWGAYRVAR--AARIAP----GGSLTFVSGFAAVRP----------------- 130 (230)
T ss_pred ECCCCCCC-CChhhCCHHHHHHHHHHHHHHHHHHHh--hhhhcC----CeEEEEECchhhcCC-----------------
Confidence 99998654 567788999999999999999999999 344433 469999999987643
Q ss_pred ccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH-Hhhhhhh
Q 018819 250 FAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF-RLLFPPF 328 (350)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~-~~~~~~~ 328 (350)
.++...|++||++++.++++++.|+. +|++++++||+++|+++... .+.. .......
T Consensus 131 ------------------~~~~~~Y~~sK~a~~~~~~~la~e~~---~irv~~i~pg~~~t~~~~~~-~~~~~~~~~~~~ 188 (230)
T PRK07041 131 ------------------SASGVLQGAINAALEALARGLALELA---PVRVNTVSPGLVDTPLWSKL-AGDAREAMFAAA 188 (230)
T ss_pred ------------------CCcchHHHHHHHHHHHHHHHHHHHhh---CceEEEEeecccccHHHHhh-hccchHHHHHHH
Confidence 35677899999999999999999983 49999999999999865321 1100 0000001
Q ss_pred H-HhhhcCccchhhhhhhccc
Q 018819 329 Q-KYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 329 ~-~~~~~~~~s~~~~a~~i~~ 348 (350)
. ........+|+|+|+.+..
T Consensus 189 ~~~~~~~~~~~~~dva~~~~~ 209 (230)
T PRK07041 189 AERLPARRVGQPEDVANAILF 209 (230)
T ss_pred HhcCCCCCCcCHHHHHHHHHH
Confidence 1 1112345678999988765
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=208.94 Aligned_cols=183 Identities=24% Similarity=0.288 Sum_probs=151.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
|+++||||++|||++++++|+++|+ +|++++|+.+..++.. .+ .++.++.||++|+++++++++.+.+ +++|
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~-~~----~~~~~~~~D~~d~~~~~~~~~~~~~--~~id 73 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGW-QVTATVRGPQQDTALQ-AL----PGVHIEKLDMNDPASLDQLLQRLQG--QRFD 73 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCC-EEEEEeCCCcchHHHH-hc----cccceEEcCCCCHHHHHHHHHHhhc--CCCC
Confidence 5899999999999999999999995 9999999876654432 22 2567889999999999999998854 4799
Q ss_pred EEEEccccCCC-CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcc
Q 018819 167 VLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (350)
Q Consensus 167 ~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (350)
++|||||+... ..++.+.+.++++..+++|+.+++.+.+.+.+.+.+. .+.++++||..+..+.
T Consensus 74 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~---~~~iv~~ss~~g~~~~------------ 138 (225)
T PRK08177 74 LLFVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPG---QGVLAFMSSQLGSVEL------------ 138 (225)
T ss_pred EEEEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhc---CCEEEEEccCcccccc------------
Confidence 99999998643 2356678899999999999999999999999988754 3689999997665321
Q ss_pred ccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.+..++..|+++|++++.+++.++.++ .++||++++|+||+++|++.
T Consensus 139 --------------------~~~~~~~~Y~~sK~a~~~~~~~l~~e~-~~~~i~v~~i~PG~i~t~~~ 185 (225)
T PRK08177 139 --------------------PDGGEMPLYKASKAALNSMTRSFVAEL-GEPTLTVLSMHPGWVKTDMG 185 (225)
T ss_pred --------------------CCCCCccchHHHHHHHHHHHHHHHHHh-hcCCeEEEEEcCCceecCCC
Confidence 012345689999999999999999998 56799999999999999875
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.6e-27 Score=206.81 Aligned_cols=215 Identities=18% Similarity=0.197 Sum_probs=168.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++++++||||++|||.++++.|+++|+ +|++++|+.+..+...+++... .++.++.||++++++++++++++...+
T Consensus 2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 2 RLKGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKY-GNIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CcCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc-CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999995 9999999987776665555433 257889999999999999999988888
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|.+|+|+|.... ..+. +.++++.++++|+.+++.+.+.++|.+.+ +++||++||..+..+
T Consensus 80 ~~id~ii~~ag~~~~-~~~~--~~~~~~~~~~~n~~~~~~~~~~~~~~~~~----~~~iv~~ss~~~~~~---------- 142 (238)
T PRK05786 80 NAIDGLVVTVGGYVE-DTVE--EFSGLEEMLTNHIKIPLYAVNASLRFLKE----GSSIVLVSSMSGIYK---------- 142 (238)
T ss_pred CCCCEEEEcCCCcCC-CchH--HHHHHHHHHHHhchHHHHHHHHHHHHHhc----CCEEEEEecchhccc----------
Confidence 899999999997543 3332 34889999999999999999999998865 368999999876431
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
+.+....|++||++++.+++.++.++ ...||++++|+||++.|++.... .+..
T Consensus 143 ------------------------~~~~~~~Y~~sK~~~~~~~~~~~~~~-~~~gi~v~~i~pg~v~~~~~~~~--~~~~ 195 (238)
T PRK05786 143 ------------------------ASPDQLSYAVAKAGLAKAVEILASEL-LGRGIRVNGIAPTTISGDFEPER--NWKK 195 (238)
T ss_pred ------------------------CCCCchHHHHHHHHHHHHHHHHHHHH-hhcCeEEEEEecCccCCCCCchh--hhhh
Confidence 12456789999999999999999998 56799999999999999753210 0000
Q ss_pred hhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 323 LLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.. .......+++++++.++++
T Consensus 196 -----~~-~~~~~~~~~~~va~~~~~~ 216 (238)
T PRK05786 196 -----LR-KLGDDMAPPEDFAKVIIWL 216 (238)
T ss_pred -----hc-cccCCCCCHHHHHHHHHHH
Confidence 00 0012256788888776643
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=205.57 Aligned_cols=217 Identities=22% Similarity=0.284 Sum_probs=170.5
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh-hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 89 VIITGASSGLGLATAKALAETGKWHIIMACRDF-LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 89 ~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~-~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
+||||++++||..++++|+++|+ +|++++|+. +..+...+.+...+.++.++.||++|+++++++++.+.+.++++|+
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 79 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGA-KVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPIDI 79 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence 58999999999999999999995 888888764 4444555555555667899999999999999999999988899999
Q ss_pred EEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcccc
Q 018819 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (350)
Q Consensus 168 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (350)
+|||+|.... ..+.+.+.++++..+++|+.+++++++.+.+.+.+.+ .++||++||.++..+.
T Consensus 80 vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~~v~~sS~~~~~g~-------------- 142 (239)
T TIGR01830 80 LVNNAGITRD-NLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQR--SGRIINISSVVGLMGN-------------- 142 (239)
T ss_pred EEECCCCCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CeEEEEECCccccCCC--------------
Confidence 9999998643 4556778899999999999999999999999886644 3699999998877542
Q ss_pred ccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhhhhh
Q 018819 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPP 327 (350)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~ 327 (350)
+++..|+.+|++++.+++.++.++ ...|+++++++||+++|++... .+. ......
T Consensus 143 ---------------------~~~~~y~~~k~a~~~~~~~l~~~~-~~~g~~~~~i~pg~~~~~~~~~--~~~-~~~~~~ 197 (239)
T TIGR01830 143 ---------------------AGQANYAASKAGVIGFTKSLAKEL-ASRNITVNAVAPGFIDTDMTDK--LSE-KVKKKI 197 (239)
T ss_pred ---------------------CCCchhHHHHHHHHHHHHHHHHHH-hhcCeEEEEEEECCCCChhhhh--cCh-HHHHHH
Confidence 466789999999999999999998 5679999999999998875321 110 000001
Q ss_pred hHHhhhcCccchhhhhhhccc
Q 018819 328 FQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 328 ~~~~~~~~~~s~~~~a~~i~~ 348 (350)
..........+++++++.++.
T Consensus 198 ~~~~~~~~~~~~~~~a~~~~~ 218 (239)
T TIGR01830 198 LSQIPLGRFGTPEEVANAVAF 218 (239)
T ss_pred HhcCCcCCCcCHHHHHHHHHH
Confidence 111112346688888876643
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-26 Score=203.86 Aligned_cols=213 Identities=25% Similarity=0.286 Sum_probs=166.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc-CCCC
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS-GRPL 165 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~-~g~i 165 (350)
|+++||||+||||+++++.|+++|+ +|++++|+.++.+...+ . .+..+.||++|.+++..+++.+.+. .+++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~----~--~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~ 75 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGY-RVLAACRKPDDVARMNS----L--GFTGILLDLDDPESVERAADEVIALTDNRL 75 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHhHHHHh----C--CCeEEEeecCCHHHHHHHHHHHHHhcCCCC
Confidence 5899999999999999999999995 89999998766554322 1 3678899999999999999988764 3689
Q ss_pred cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcc
Q 018819 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (350)
|++|||+|.... .++.+.+.+++++.+++|+.|++++++.+++.+.+.+ .++||++||..+..+
T Consensus 76 ~~ii~~ag~~~~-~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~--~~~iv~~ss~~~~~~------------- 139 (256)
T PRK08017 76 YGLFNNAGFGVY-GPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHG--EGRIVMTSSVMGLIS------------- 139 (256)
T ss_pred eEEEECCCCCCc-cchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC--CCEEEEEcCcccccC-------------
Confidence 999999997543 5667889999999999999999999999999988765 469999999877643
Q ss_pred ccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh-HH-h
Q 018819 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL-FR-L 323 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~-~~-~ 323 (350)
.++...|+++|++++.+++.++.++ ...|+++++|+||.++|++........ .. .
T Consensus 140 ----------------------~~~~~~Y~~sK~~~~~~~~~l~~~~-~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~ 196 (256)
T PRK08017 140 ----------------------TPGRGAYAASKYALEAWSDALRMEL-RHSGIKVSLIEPGPIRTRFTDNVNQTQSDKPV 196 (256)
T ss_pred ----------------------CCCccHHHHHHHHHHHHHHHHHHHH-hhcCCEEEEEeCCCcccchhhcccchhhccch
Confidence 2466789999999999999999988 567999999999999987542211000 00 0
Q ss_pred hhhhhHHhhhcCccchhhhhhhccc
Q 018819 324 LFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 324 ~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
..+.. ......+++++++.+..
T Consensus 197 ~~~~~---~~~~~~~~~d~a~~~~~ 218 (256)
T PRK08017 197 ENPGI---AARFTLGPEAVVPKLRH 218 (256)
T ss_pred hhhHH---HhhcCCCHHHHHHHHHH
Confidence 00111 11235788888877653
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-26 Score=203.64 Aligned_cols=176 Identities=19% Similarity=0.157 Sum_probs=130.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|+++||||++|||+++|+.|+++|+ +|++++|+.....+ .... + ...++.+|++|.+++++ .+
T Consensus 11 ~l~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~~~~~~~--~~~~--~-~~~~~~~D~~~~~~~~~-------~~ 77 (245)
T PRK12367 11 TWQGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHSKINNSE--SNDE--S-PNEWIKWECGKEESLDK-------QL 77 (245)
T ss_pred hhCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECCchhhhh--hhcc--C-CCeEEEeeCCCHHHHHH-------hc
Confidence 56889999999999999999999999995 89988887522111 1111 1 12578899999988764 34
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCC-CCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY-PSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~-~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
+++|++|||||+.. ..+.+.++|++++++|+.|+++++++++|.|.+++. .++.+++.||.++..
T Consensus 78 ~~iDilVnnAG~~~----~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~~---------- 143 (245)
T PRK12367 78 ASLDVLILNHGINP----GGRQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAEIQ---------- 143 (245)
T ss_pred CCCCEEEECCccCC----cCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEecccccC----------
Confidence 68999999999742 234688999999999999999999999999976321 123344445554432
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHH---HHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTM---QEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~---~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
.++...|++||+++..+. +.++.|+ ...+++|++++||+++|++
T Consensus 144 --------------------------~~~~~~Y~aSKaal~~~~~l~~~l~~e~-~~~~i~v~~~~pg~~~t~~ 190 (245)
T PRK12367 144 --------------------------PALSPSYEISKRLIGQLVSLKKNLLDKN-ERKKLIIRKLILGPFRSEL 190 (245)
T ss_pred --------------------------CCCCchhHHHHHHHHHHHHHHHHHHHhh-cccccEEEEecCCCccccc
Confidence 123467999999986544 3444444 4679999999999999874
|
|
| >KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-27 Score=197.41 Aligned_cols=222 Identities=17% Similarity=0.169 Sum_probs=167.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.++++|+||+|+|||..++..+.+.+ ...+..+++....+ ........+........|+++..-++.+++..+.+++.
T Consensus 5 ~r~villTGaSrgiG~~~v~~i~aed-~e~~r~g~~r~~a~-~~~L~v~~gd~~v~~~g~~~e~~~l~al~e~~r~k~gk 82 (253)
T KOG1204|consen 5 MRKVILLTGASRGIGTGSVATILAED-DEALRYGVARLLAE-LEGLKVAYGDDFVHVVGDITEEQLLGALREAPRKKGGK 82 (253)
T ss_pred cceEEEEecCCCCccHHHHHHHHhcc-hHHHHHhhhccccc-ccceEEEecCCcceechHHHHHHHHHHHHhhhhhcCCc
Confidence 46789999999999999888888777 34444444332222 11111223444455667899888899999999999999
Q ss_pred CcEEEEccccCCCCCCCC--CCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 165 LDVLVCNAAVYLPTAKEP--TFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~--~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
.|++|||||...+..... ..+.++|++.++.|+++.+.|.+.++|.++++. ..+.+||+||.++..
T Consensus 83 r~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p-~~~~vVnvSS~aav~----------- 150 (253)
T KOG1204|consen 83 RDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSP-VNGNVVNVSSLAAVR----------- 150 (253)
T ss_pred eeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCC-ccCeEEEecchhhhc-----------
Confidence 999999999987654444 678999999999999999999999999998874 247999999999874
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccc-----
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH----- 317 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~----- 317 (350)
|+++|++||.+|+|.++|++.++.|. +.++++.++.||.|+|+|....+
T Consensus 151 ------------------------p~~~wa~yc~~KaAr~m~f~~lA~EE--p~~v~vl~~aPGvvDT~mq~~ir~~~~~ 204 (253)
T KOG1204|consen 151 ------------------------PFSSWAAYCSSKAARNMYFMVLASEE--PFDVRVLNYAPGVVDTQMQVCIRETSRM 204 (253)
T ss_pred ------------------------cccHHHHhhhhHHHHHHHHHHHhhcC--ccceeEEEccCCcccchhHHHHhhccCC
Confidence 47899999999999999999999994 47999999999999999863222
Q ss_pred hhhHHhhhhhhHHhhhcCccchhhhhhhccc
Q 018819 318 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
.|-....+.... -...+.+|...++.+..
T Consensus 205 ~p~~l~~f~el~--~~~~ll~~~~~a~~l~~ 233 (253)
T KOG1204|consen 205 TPADLKMFKELK--ESGQLLDPQVTAKVLAK 233 (253)
T ss_pred CHHHHHHHHHHH--hcCCcCChhhHHHHHHH
Confidence 122111111111 12556778777777654
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=196.82 Aligned_cols=181 Identities=24% Similarity=0.250 Sum_probs=147.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
++++||||+++||++++++|+++|+ +|++++|+.+..++... . .+.++.+|++|.++++++++++.. +++|
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~-~v~~~~r~~~~~~~~~~----~--~~~~~~~D~~~~~~v~~~~~~~~~--~~~d 72 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGW-RVIATARDAAALAALQA----L--GAEALALDVADPASVAGLAWKLDG--EALD 72 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCC-EEEEEECCHHHHHHHHh----c--cceEEEecCCCHHHHHHHHHHhcC--CCCC
Confidence 5899999999999999999999995 89999998766554322 1 346789999999999998877642 4799
Q ss_pred EEEEccccCCC-CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcc
Q 018819 167 VLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (350)
Q Consensus 167 ~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (350)
++|||+|.... ...+.+.+.++|++.+++|+.+++++++++.|.|.+. .|+||++||..+..+..
T Consensus 73 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~---~g~iv~isS~~~~~~~~----------- 138 (222)
T PRK06953 73 AAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAA---GGVLAVLSSRMGSIGDA----------- 138 (222)
T ss_pred EEEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhcc---CCeEEEEcCcccccccc-----------
Confidence 99999998632 2445677899999999999999999999999988664 36999999988765320
Q ss_pred ccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccc
Q 018819 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~ 314 (350)
+......|+++|++++.+++.++.++ .++++++|+||+++|++..
T Consensus 139 ---------------------~~~~~~~Y~~sK~a~~~~~~~~~~~~---~~i~v~~v~Pg~i~t~~~~ 183 (222)
T PRK06953 139 ---------------------TGTTGWLYRASKAALNDALRAASLQA---RHATCIALHPGWVRTDMGG 183 (222)
T ss_pred ---------------------cCCCccccHHhHHHHHHHHHHHhhhc---cCcEEEEECCCeeecCCCC
Confidence 01122369999999999999999886 3799999999999998753
|
|
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=183.38 Aligned_cols=225 Identities=15% Similarity=0.161 Sum_probs=176.2
Q ss_pred cccCCCEEEEEcCC--CchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 82 ~~l~~~~~lItGgs--~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
..|+||++||+|-. +.|++.||+.|.++|| .++++..++ ++++-.+++.+.-....+++||+++.+++.++++++.
T Consensus 2 g~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GA-eL~fTy~~e-~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~ 79 (259)
T COG0623 2 GLLEGKRILIMGVANNRSIAWGIAKALAEQGA-ELAFTYQGE-RLEKRVEELAEELGSDLVLPCDVTNDESIDALFATIK 79 (259)
T ss_pred CccCCceEEEEEecccccHHHHHHHHHHHcCC-EEEEEeccH-HHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHHH
Confidence 46899999999976 6899999999999997 888888875 4444444443222235788999999999999999999
Q ss_pred HcCCCCcEEEEccccCCC---CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCC
Q 018819 160 RSGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~---~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~ 236 (350)
+++|++|+|||+-+.... .+.+.+.+.|.|...+++...+...+.+++.|.|.+ +|+||.++-..+..
T Consensus 80 ~~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~----ggSiltLtYlgs~r----- 150 (259)
T COG0623 80 KKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNN----GGSILTLTYLGSER----- 150 (259)
T ss_pred HhhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCC----CCcEEEEEecccee-----
Confidence 999999999999998642 356667899999999999999999999999999987 47999988655532
Q ss_pred CCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccccc
Q 018819 237 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 316 (350)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~ 316 (350)
..|.+...+.+|+++++-+|.++.++ .+.|||||+|+-|+|+|= ....
T Consensus 151 ------------------------------~vPnYNvMGvAKAaLEasvRyLA~dl-G~~gIRVNaISAGPIrTL-Aasg 198 (259)
T COG0623 151 ------------------------------VVPNYNVMGVAKAALEASVRYLAADL-GKEGIRVNAISAGPIRTL-AASG 198 (259)
T ss_pred ------------------------------ecCCCchhHHHHHHHHHHHHHHHHHh-CccCeEEeeecccchHHH-Hhhc
Confidence 13556678899999999999999999 677999999999999983 1111
Q ss_pred chhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 317 HIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
-..+.++........+.++.++.||+++.-++|
T Consensus 199 I~~f~~~l~~~e~~aPl~r~vt~eeVG~tA~fL 231 (259)
T COG0623 199 IGDFRKMLKENEANAPLRRNVTIEEVGNTAAFL 231 (259)
T ss_pred cccHHHHHHHHHhhCCccCCCCHHHhhhhHHHH
Confidence 112233333333334457778999998876543
|
|
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-25 Score=190.73 Aligned_cols=175 Identities=22% Similarity=0.261 Sum_probs=139.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh---hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDF---LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~---~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+||||||.||||..++++|+++|+.+|++++|+. ...++..++++..+.++.+++||++|++++.++++++.+++++
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~ 81 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGP 81 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCC
Confidence 8999999999999999999999988999999982 3455677788878899999999999999999999999999999
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
|++|||+||...+ ..+.+.+.++++.++..++.|.++|.+.+.+.- -.++|++||+++..|.
T Consensus 82 i~gVih~ag~~~~-~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~------l~~~i~~SSis~~~G~----------- 143 (181)
T PF08659_consen 82 IDGVIHAAGVLAD-APIQDQTPDEFDAVLAPKVRGLWNLHEALENRP------LDFFILFSSISSLLGG----------- 143 (181)
T ss_dssp EEEEEE--------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTT------TSEEEEEEEHHHHTT------------
T ss_pred cceeeeeeeeecc-cccccCCHHHHHHHHhhhhhHHHHHHHHhhcCC------CCeEEEECChhHhccC-----------
Confidence 9999999999764 788899999999999999999999999886522 2499999999998764
Q ss_pred cccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCccc
Q 018819 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA 309 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~ 309 (350)
+++..|+++.+.++.+++.... .|.++.+|+.|..+
T Consensus 144 ------------------------~gq~~YaaAN~~lda~a~~~~~-----~g~~~~sI~wg~W~ 179 (181)
T PF08659_consen 144 ------------------------PGQSAYAAANAFLDALARQRRS-----RGLPAVSINWGAWD 179 (181)
T ss_dssp ------------------------TTBHHHHHHHHHHHHHHHHHHH-----TTSEEEEEEE-EBS
T ss_pred ------------------------cchHhHHHHHHHHHHHHHHHHh-----CCCCEEEEEccccC
Confidence 6899999999999988875543 27889999988764
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=240.88 Aligned_cols=183 Identities=20% Similarity=0.155 Sum_probs=156.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh-------------------------------------------
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF------------------------------------------- 121 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~------------------------------------------- 121 (350)
+++++|||||++|||+++|++|+++|..+|++++|+.
T Consensus 1996 ~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~ 2075 (2582)
T TIGR02813 1996 SDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRP 2075 (2582)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcccc
Confidence 6899999999999999999999998424999999981
Q ss_pred ----hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhh
Q 018819 122 ----LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNH 197 (350)
Q Consensus 122 ----~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~ 197 (350)
.+..+..+.+...|.++.++.||++|.++++++++++.+. ++||+||||||+..+ ..+.+.+.++|+++|++|+
T Consensus 2076 ~~~~~ei~~~la~l~~~G~~v~y~~~DVtD~~av~~av~~v~~~-g~IDgVVhnAGv~~~-~~i~~~t~e~f~~v~~~nv 2153 (2582)
T TIGR02813 2076 VLSSLEIAQALAAFKAAGASAEYASADVTNSVSVAATVQPLNKT-LQITGIIHGAGVLAD-KHIQDKTLEEFNAVYGTKV 2153 (2582)
T ss_pred cchhHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHh-CCCcEEEECCccCCC-CCcccCCHHHHHHHHHHHH
Confidence 1112223344556778999999999999999999999877 689999999999755 7888999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhh
Q 018819 198 LGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDS 277 (350)
Q Consensus 198 ~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~as 277 (350)
.|++++++++.+.+. ++||++||+++..|. +++..|+++
T Consensus 2154 ~G~~~Ll~al~~~~~------~~IV~~SSvag~~G~-----------------------------------~gqs~YaaA 2192 (2582)
T TIGR02813 2154 DGLLSLLAALNAENI------KLLALFSSAAGFYGN-----------------------------------TGQSDYAMS 2192 (2582)
T ss_pred HHHHHHHHHHHHhCC------CeEEEEechhhcCCC-----------------------------------CCcHHHHHH
Confidence 999999999877543 389999999998653 678899999
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 278 KVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 278 Kaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
|++++.+++.++.++ .+++|++|+||+++|+|.
T Consensus 2193 kaaL~~la~~la~~~---~~irV~sI~wG~wdtgm~ 2225 (2582)
T TIGR02813 2193 NDILNKAALQLKALN---PSAKVMSFNWGPWDGGMV 2225 (2582)
T ss_pred HHHHHHHHHHHHHHc---CCcEEEEEECCeecCCcc
Confidence 999999999999886 269999999999999875
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.1e-24 Score=187.72 Aligned_cols=205 Identities=23% Similarity=0.262 Sum_probs=160.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
.|++|||||+|+||+++++.|+++ . +|++++|+.+..++..+.. ..+.++.+|++|+++++++++.+ +++
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~-~V~~~~r~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~----~~i 72 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-H-TLLLGGRPAERLDELAAEL----PGATPFPVDLTDPEAIAAAVEQL----GRL 72 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-C-CEEEEeCCHHHHHHHHHHh----ccceEEecCCCCHHHHHHHHHhc----CCC
Confidence 468999999999999999999998 4 8999999876655544333 24778999999999998887754 479
Q ss_pred cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcc
Q 018819 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (350)
|++||++|.... ..+.+.+.++|++++++|+.+++.+++.+++.+.++. +++|++||..+..+
T Consensus 73 d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~---~~~v~~ss~~~~~~------------- 135 (227)
T PRK08219 73 DVLVHNAGVADL-GPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAAH---GHVVFINSGAGLRA------------- 135 (227)
T ss_pred CEEEECCCcCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC---CeEEEEcchHhcCc-------------
Confidence 999999998643 5566788999999999999999999999999887753 69999999877642
Q ss_pred ccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhhh
Q 018819 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 325 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~ 325 (350)
.++...|+.+|++++.+++.++.++ ... +++++|+||.++|++.... ...
T Consensus 136 ----------------------~~~~~~y~~~K~a~~~~~~~~~~~~-~~~-i~~~~i~pg~~~~~~~~~~--~~~---- 185 (227)
T PRK08219 136 ----------------------NPGWGSYAASKFALRALADALREEE-PGN-VRVTSVHPGRTDTDMQRGL--VAQ---- 185 (227)
T ss_pred ----------------------CCCCchHHHHHHHHHHHHHHHHHHh-cCC-ceEEEEecCCccchHhhhh--hhh----
Confidence 2456789999999999999998887 333 9999999999988743210 000
Q ss_pred hhhHHhhhcCccchhhhhhhccc
Q 018819 326 PPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 326 ~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
.........+++++++++.++.
T Consensus 186 -~~~~~~~~~~~~~~dva~~~~~ 207 (227)
T PRK08219 186 -EGGEYDPERYLRPETVAKAVRF 207 (227)
T ss_pred -hccccCCCCCCCHHHHHHHHHH
Confidence 0001112346889999988764
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-23 Score=194.27 Aligned_cols=191 Identities=18% Similarity=0.191 Sum_probs=142.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|+++||||+||||+++++.|+++|+ +|++++|+.++.++... .....+..+.+|++|.+++.+.+
T Consensus 175 sl~gK~VLITGASgGIG~aLA~~La~~G~-~Vi~l~r~~~~l~~~~~---~~~~~v~~v~~Dvsd~~~v~~~l------- 243 (406)
T PRK07424 175 SLKGKTVAVTGASGTLGQALLKELHQQGA-KVVALTSNSDKITLEIN---GEDLPVKTLHWQVGQEAALAELL------- 243 (406)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh---hcCCCeEEEEeeCCCHHHHHHHh-------
Confidence 46789999999999999999999999995 89888888665443222 12234678899999998876543
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCC--CCCeEEEEeccCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY--PSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~--~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
+++|++|||||+... .+.+.+++++++++|+.|+++++++++|.|.+++. .++.+|++|| ++..
T Consensus 244 ~~IDiLInnAGi~~~----~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ss-a~~~--------- 309 (406)
T PRK07424 244 EKVDILIINHGINVH----GERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSE-AEVN--------- 309 (406)
T ss_pred CCCCEEEECCCcCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEcc-cccc---------
Confidence 479999999997532 35788999999999999999999999999977542 1234566554 3221
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~ 320 (350)
.+....|++||+|+..++. +.++. .++.+..+.||.++|++. |
T Consensus 310 ---------------------------~~~~~~Y~ASKaAl~~l~~-l~~~~---~~~~I~~i~~gp~~t~~~-----~- 352 (406)
T PRK07424 310 ---------------------------PAFSPLYELSKRALGDLVT-LRRLD---APCVVRKLILGPFKSNLN-----P- 352 (406)
T ss_pred ---------------------------CCCchHHHHHHHHHHHHHH-HHHhC---CCCceEEEEeCCCcCCCC-----c-
Confidence 1234679999999999874 44432 367788889999988741 1
Q ss_pred HHhhhhhhHHhhhcCccchhhhhhhccc
Q 018819 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 321 ~~~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
.+.++||++|+.+++
T Consensus 353 -------------~~~~spe~vA~~il~ 367 (406)
T PRK07424 353 -------------IGVMSADWVAKQILK 367 (406)
T ss_pred -------------CCCCCHHHHHHHHHH
Confidence 123688888887654
|
|
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.9e-23 Score=172.78 Aligned_cols=176 Identities=22% Similarity=0.249 Sum_probs=143.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHH---HHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA---AKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~---~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
++++||||++|||++++++|+++|+..|++++|+.+..+.. .+++...+.++.++.+|++++++++++++++...++
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAALAAIPARLG 80 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 47999999999999999999999966788888875433221 234444566788999999999999999999988889
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCC
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (350)
++|++|||+|.... ..+.+.+.++|+..+++|+.+++++.+.+.+ .+ .+++|++||..+..+
T Consensus 81 ~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~ii~~ss~~~~~~----------- 142 (180)
T smart00822 81 PLRGVIHAAGVLDD-GLLANLTPERFAAVLAPKVDGAWNLHELTRD----LP--LDFFVLFSSVAGVLG----------- 142 (180)
T ss_pred CeeEEEEccccCCc-cccccCCHHHHHHhhchHhHHHHHHHHHhcc----CC--cceEEEEccHHHhcC-----------
Confidence 99999999998643 5567888999999999999999999998843 12 368999999887653
Q ss_pred ccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCccc
Q 018819 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA 309 (350)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~ 309 (350)
.++...|+++|.++..+++.+.. .|+++.+++||++.
T Consensus 143 ------------------------~~~~~~y~~sk~~~~~~~~~~~~-----~~~~~~~~~~g~~~ 179 (180)
T smart00822 143 ------------------------NPGQANYAAANAFLDALAAHRRA-----RGLPATSINWGAWA 179 (180)
T ss_pred ------------------------CCCchhhHHHHHHHHHHHHHHHh-----cCCceEEEeecccc
Confidence 24667899999999998876543 38889999999875
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-23 Score=186.42 Aligned_cols=210 Identities=20% Similarity=0.112 Sum_probs=141.6
Q ss_pred HHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcEEEEccccCCCCCCC
Q 018819 102 TAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKE 181 (350)
Q Consensus 102 ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~ 181 (350)
+|+.|+++|+ +|++++|+.++.+ ...+++||++|.++++++++++. +++|+||||||+...
T Consensus 1 ~a~~l~~~G~-~Vv~~~r~~~~~~-----------~~~~~~~Dl~~~~~v~~~~~~~~---~~iD~li~nAG~~~~---- 61 (241)
T PRK12428 1 TARLLRFLGA-RVIGVDRREPGMT-----------LDGFIQADLGDPASIDAAVAALP---GRIDALFNIAGVPGT---- 61 (241)
T ss_pred ChHHHHhCCC-EEEEEeCCcchhh-----------hhHhhcccCCCHHHHHHHHHHhc---CCCeEEEECCCCCCC----
Confidence 4789999995 9999999865532 12467899999999999998874 589999999997521
Q ss_pred CCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccccccccccCCCCCCCc
Q 018819 182 PTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSS 261 (350)
Q Consensus 182 ~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (350)
+.|+.++++|+.+++++++.++|.|.+ .|+||++||.++.... ...+ ....+...........
T Consensus 62 -----~~~~~~~~vN~~~~~~l~~~~~~~~~~----~g~Iv~isS~~~~~~~--~~~~------~~~~~~~~~~~~~~~~ 124 (241)
T PRK12428 62 -----APVELVARVNFLGLRHLTEALLPRMAP----GGAIVNVASLAGAEWP--QRLE------LHKALAATASFDEGAA 124 (241)
T ss_pred -----CCHHHhhhhchHHHHHHHHHHHHhccC----CcEEEEeCcHHhhccc--cchH------HHHhhhccchHHHHHH
Confidence 247899999999999999999999864 3699999999876310 0000 0000000000000000
Q ss_pred ccCCCCCCchhchhhhHHHHHHHHHHHH-HhhcCCCCcEEEEeeCCcccCCcccccchhhHHhhhhhhHHhhhcCccchh
Q 018819 262 MIDGGDFDGAKAYKDSKVCNMLTMQEFH-RRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSED 340 (350)
Q Consensus 262 ~~~~~~~~~~~~Y~asKaa~~~~~~~la-~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 340 (350)
+....+.++...|++||++++.+++.++ .++ .++||+||+|+||+|+|++.... .+...............++.+||
T Consensus 125 ~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~e~-~~~girvn~v~PG~v~T~~~~~~-~~~~~~~~~~~~~~~~~~~~~pe 202 (241)
T PRK12428 125 WLAAHPVALATGYQLSKEALILWTMRQAQPWF-GARGIRVNCVAPGPVFTPILGDF-RSMLGQERVDSDAKRMGRPATAD 202 (241)
T ss_pred hhhccCCCcccHHHHHHHHHHHHHHHHHHHhh-hccCeEEEEeecCCccCcccccc-hhhhhhHhhhhcccccCCCCCHH
Confidence 0001235677899999999999999999 888 66799999999999999975321 11000000000011123467899
Q ss_pred hhhhhcccc
Q 018819 341 EAGKRLAQV 349 (350)
Q Consensus 341 ~~a~~i~~~ 349 (350)
++|+.++++
T Consensus 203 ~va~~~~~l 211 (241)
T PRK12428 203 EQAAVLVFL 211 (241)
T ss_pred HHHHHHHHH
Confidence 999988764
|
|
| >KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4e-22 Score=169.86 Aligned_cols=201 Identities=27% Similarity=0.368 Sum_probs=164.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC----cEEEEEecChhHHHHHHHHhccC----CCceEEEEccCCCHHHHHHHHHH
Q 018819 86 KGSVIITGASSGLGLATAKALAETGK----WHIIMACRDFLKAERAAKSAGMA----KENYTIMHLDLASLDSVRQFVDT 157 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga----~~Vi~~~r~~~~~~~~~~~l~~~----~~~v~~~~~Dvs~~~~v~~~~~~ 157 (350)
.|++||||+++|||.++|++|.+..- -++++++|+.++.++.+..+... ..++.++.+|+++..++.++..+
T Consensus 3 RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~~d 82 (341)
T KOG1478|consen 3 RKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRASKD 82 (341)
T ss_pred ceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHHHH
Confidence 47999999999999999999987652 26888999999999988887543 34789999999999999999999
Q ss_pred HHHcCCCCcEEEEccccCCCCC--------------------------CCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 018819 158 FRRSGRPLDVLVCNAAVYLPTA--------------------------KEPTFTAEGFELSVGTNHLGHFLLSRLLLDDL 211 (350)
Q Consensus 158 ~~~~~g~id~lv~~Ag~~~~~~--------------------------~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~ 211 (350)
+..++.++|.+..|||++..++ .....+.+++..+|+.||+|+|.+.+.+.|.+
T Consensus 83 i~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~pll 162 (341)
T KOG1478|consen 83 IKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEPLL 162 (341)
T ss_pred HHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhhHh
Confidence 9999999999999999864321 11135778899999999999999999999999
Q ss_pred hcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHh
Q 018819 212 KQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRR 291 (350)
Q Consensus 212 ~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e 291 (350)
..++. ..+|.+||..+.-.+ ..++++. -..+..+|..||.+++.+.-++.+.
T Consensus 163 ~~~~~--~~lvwtSS~~a~kk~--------lsleD~q------------------~~kg~~pY~sSKrl~DlLh~A~~~~ 214 (341)
T KOG1478|consen 163 CHSDN--PQLVWTSSRMARKKN--------LSLEDFQ------------------HSKGKEPYSSSKRLTDLLHVALNRN 214 (341)
T ss_pred hcCCC--CeEEEEeeccccccc--------CCHHHHh------------------hhcCCCCcchhHHHHHHHHHHHhcc
Confidence 88763 389999999876321 2222221 1356778999999999999888888
Q ss_pred hcCCCCcEEEEeeCCcccCCcccc
Q 018819 292 FHEETGIAFASLYPGCIATTGLFR 315 (350)
Q Consensus 292 ~~~~~gi~v~~v~PG~v~t~~~~~ 315 (350)
+ .+.|+.-++++||...|.++..
T Consensus 215 ~-~~~g~~qyvv~pg~~tt~~~~~ 237 (341)
T KOG1478|consen 215 F-KPLGINQYVVQPGIFTTNSFSE 237 (341)
T ss_pred c-cccchhhhcccCceeecchhhh
Confidence 7 7789999999999987765533
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-20 Score=175.09 Aligned_cols=170 Identities=18% Similarity=0.177 Sum_probs=132.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcC-CcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~G-a~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
+++|++|||||+|+||+++++.|+++| ..+|++++|+........+.+. +.++.++.+|++|.+++.++++
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~--~~~~~~v~~Dl~d~~~l~~~~~------ 73 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFP--APCLRFFIGDVRDKERLTRALR------ 73 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhC--CCcEEEEEccCCCHHHHHHHHh------
Confidence 467899999999999999999999986 2478888887655444433332 2468899999999999888765
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
.+|+|||+||.... +..+. +.+..+++|+.|++++++++.+. + .++||++||....
T Consensus 74 -~iD~Vih~Ag~~~~--~~~~~---~~~~~~~~Nv~g~~~ll~aa~~~----~--~~~iV~~SS~~~~------------ 129 (324)
T TIGR03589 74 -GVDYVVHAAALKQV--PAAEY---NPFECIRTNINGAQNVIDAAIDN----G--VKRVVALSTDKAA------------ 129 (324)
T ss_pred -cCCEEEECcccCCC--chhhc---CHHHHHHHHHHHHHHHHHHHHHc----C--CCEEEEEeCCCCC------------
Confidence 58999999997432 22222 23568999999999999998753 1 2589999996432
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
.+...|++||++.+.+++.++.++ ...|+++++++||.|.+|.
T Consensus 130 --------------------------~p~~~Y~~sK~~~E~l~~~~~~~~-~~~gi~~~~lR~g~v~G~~ 172 (324)
T TIGR03589 130 --------------------------NPINLYGATKLASDKLFVAANNIS-GSKGTRFSVVRYGNVVGSR 172 (324)
T ss_pred --------------------------CCCCHHHHHHHHHHHHHHHHHhhc-cccCcEEEEEeecceeCCC
Confidence 134579999999999999887765 5569999999999999874
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.6e-20 Score=169.54 Aligned_cols=189 Identities=19% Similarity=0.113 Sum_probs=136.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhcc--CCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM--AKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~--~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+|++|||||+|+||+++++.|+++|+ .|+++.|+....+.....+.. ...++.++.+|++|.++++++++
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~------ 76 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGY-TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAID------ 76 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCC-EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHc------
Confidence 578999999999999999999999994 888888876544333222221 12468889999999999888775
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
++|++|||||.... ..+.+.+...+++|+.+++++++++.+.+. .++||++||.+++.+......+ .
T Consensus 77 -~~d~vih~A~~~~~-----~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~-----~~~iv~~SS~~~~~~~~~~~~~-~- 143 (325)
T PLN02989 77 -GCETVFHTASPVAI-----TVKTDPQVELINPAVNGTINVLRTCTKVSS-----VKRVILTSSMAAVLAPETKLGP-N- 143 (325)
T ss_pred -CCCEEEEeCCCCCC-----CCCCChHHHHHHHHHHHHHHHHHHHHHcCC-----ceEEEEecchhheecCCccCCC-C-
Confidence 58999999996421 234456788999999999999999877532 2589999998776432100000 0
Q ss_pred CccccccccccCCCCCCCcccCCCCC------CchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccc
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDF------DGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~ 314 (350)
....|..+. .....|+.||.+.+.+++.+++++ |++++.+.|+.+.+|...
T Consensus 144 -----------------~~~~E~~~~~p~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----~~~~~ilR~~~vyGp~~~ 200 (325)
T PLN02989 144 -----------------DVVDETFFTNPSFAEERKQWYVLSKTLAEDAAWRFAKDN----EIDLIVLNPGLVTGPILQ 200 (325)
T ss_pred -----------------CccCcCCCCchhHhcccccchHHHHHHHHHHHHHHHHHc----CCeEEEEcCCceeCCCCC
Confidence 001111111 123579999999999888887664 899999999999998653
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.2e-20 Score=153.28 Aligned_cols=146 Identities=15% Similarity=0.124 Sum_probs=121.3
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+.+++|+++||||++|||+++|+.|+++|+ +|++++|+.+..++..+++...+.++.++.+|+++.++++++++++.+.
T Consensus 12 ~~l~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~ 90 (169)
T PRK06720 12 MKLAGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNA 90 (169)
T ss_pred cccCCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999995 8999999887777766666555667788999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCC-----CCCeEEEEeccCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY-----PSKRLIIVGSITGNT 231 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~-----~~g~iV~vSS~~~~~ 231 (350)
+|++|++|||||+......+.+.+.++++ .+|+.+.+..++.+.+.|.+++. +.|++..|||.+...
T Consensus 91 ~G~iDilVnnAG~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (169)
T PRK06720 91 FSRIDMLFQNAGLYKIDSIFSRQQENDSN---VLCINDVWIEIKQLTSSFMKQQEEVVLSDLPIFGIIGTKGQSF 162 (169)
T ss_pred cCCCCEEEECCCcCCCCCcccccchhHhh---ceeccHHHHHHHHHHHHHHhcCCEEEeecCceeeEeccccccc
Confidence 99999999999997655666665655533 67777889999999998876543 368999999877654
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=170.41 Aligned_cols=189 Identities=19% Similarity=0.145 Sum_probs=139.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
+++|++|||||+|+||.++++.|+++| ++|++++|+..........+. .+.++.++.+|++|.+++.++++..
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~----- 74 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELG-AEVYGYSLDPPTSPNLFELLN-LAKKIEDHFGDIRDAAKLRKAIAEF----- 74 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCC-CEEEEEeCCCccchhHHHHHh-hcCCceEEEccCCCHHHHHHHHhhc-----
Confidence 467899999999999999999999999 589888887654333322222 1235778899999999999988864
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCC
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (350)
++|+|||+|+.... ..+.+++...+++|+.+++++++++... .. .++||++||...+... ..
T Consensus 75 ~~d~vih~A~~~~~-----~~~~~~~~~~~~~N~~g~~~ll~a~~~~---~~--~~~iv~~SS~~vyg~~-~~------- 136 (349)
T TIGR02622 75 KPEIVFHLAAQPLV-----RKSYADPLETFETNVMGTVNLLEAIRAI---GS--VKAVVNVTSDKCYRND-EW------- 136 (349)
T ss_pred CCCEEEECCccccc-----ccchhCHHHHHHHhHHHHHHHHHHHHhc---CC--CCEEEEEechhhhCCC-CC-------
Confidence 58999999996322 2355677889999999999999987432 11 2489999997644210 00
Q ss_pred ccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCC---CCcEEEEeeCCcccCCc
Q 018819 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEE---TGIAFASLYPGCIATTG 312 (350)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~---~gi~v~~v~PG~v~t~~ 312 (350)
..+..+..+..+...|+.||.+.+.+++.++.++... +|++++++.|+.+.+|+
T Consensus 137 ---------------~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~ 193 (349)
T TIGR02622 137 ---------------VWGYRETDPLGGHDPYSSSKACAELVIASYRSSFFGVANFHGIKIASARAGNVIGGG 193 (349)
T ss_pred ---------------CCCCccCCCCCCCCcchhHHHHHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCC
Confidence 0011122233456789999999999999998876322 38999999999999875
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-19 Score=175.28 Aligned_cols=206 Identities=16% Similarity=0.163 Sum_probs=142.4
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhcc-----CC----CceEEEEccCCCHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-----AK----ENYTIMHLDLASLDSVRQ 153 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~-----~~----~~v~~~~~Dvs~~~~v~~ 153 (350)
...+|++|||||+||||++++++|+++| ++|+++.|+.++.+.+.+++.. .+ .++.++.+|++|.+++.+
T Consensus 77 ~~~gKvVLVTGATGgIG~aLAr~LLk~G-~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~ 155 (576)
T PLN03209 77 TKDEDLAFVAGATGKVGSRTVRELLKLG-FRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGP 155 (576)
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHH
Confidence 3478999999999999999999999999 5999999998877666554422 11 358899999999988765
Q ss_pred HHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCC
Q 018819 154 FVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNT 233 (350)
Q Consensus 154 ~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~ 233 (350)
.+ +++|+||||+|.... ...+|...+++|+.|+.++++++... + .++||++||+.+....
T Consensus 156 aL-------ggiDiVVn~AG~~~~-------~v~d~~~~~~VN~~Gt~nLl~Aa~~a----g--VgRIV~VSSiga~~~g 215 (576)
T PLN03209 156 AL-------GNASVVICCIGASEK-------EVFDVTGPYRIDYLATKNLVDAATVA----K--VNHFILVTSLGTNKVG 215 (576)
T ss_pred Hh-------cCCCEEEEccccccc-------cccchhhHHHHHHHHHHHHHHHHHHh----C--CCEEEEEccchhcccC
Confidence 43 479999999997421 12247788999999999999997643 1 3599999998653110
Q ss_pred CCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 234 LAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.+. ..|. +|.++..+.+.+..++ ...||+++.|+||++.|++.
T Consensus 216 ----------------------------------~p~-~~~~-sk~~~~~~KraaE~~L-~~sGIrvTIVRPG~L~tp~d 258 (576)
T PLN03209 216 ----------------------------------FPA-AILN-LFWGVLCWKRKAEEAL-IASGLPYTIVRPGGMERPTD 258 (576)
T ss_pred ----------------------------------ccc-cchh-hHHHHHHHHHHHHHHH-HHcCCCEEEEECCeecCCcc
Confidence 011 1133 5666666666666666 45699999999999998743
Q ss_pred cccchhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 314 FREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..... ... ..........+.++.+|+|+.++++
T Consensus 259 ~~~~t--~~v-~~~~~d~~~gr~isreDVA~vVvfL 291 (576)
T PLN03209 259 AYKET--HNL-TLSEEDTLFGGQVSNLQVAELMACM 291 (576)
T ss_pred ccccc--cce-eeccccccCCCccCHHHHHHHHHHH
Confidence 21000 000 0000111224567888888887763
|
|
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-18 Score=161.36 Aligned_cols=184 Identities=17% Similarity=0.077 Sum_probs=133.8
Q ss_pred CCCEEEEEcCCCchHHH--HHHHHHHcCCcEEEEEecChhH------------HHHHHHHhccCCCceEEEEccCCCHHH
Q 018819 85 RKGSVIITGASSGLGLA--TAKALAETGKWHIIMACRDFLK------------AERAAKSAGMAKENYTIMHLDLASLDS 150 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~--ia~~la~~Ga~~Vi~~~r~~~~------------~~~~~~~l~~~~~~v~~~~~Dvs~~~~ 150 (350)
.+|++||||+++|||.+ +|+.| +.|+ +++++++..+. .+...+.++..|..+..+.||+++.++
T Consensus 40 ggK~aLVTGaSsGIGlA~~IA~al-~~GA-~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~ 117 (398)
T PRK13656 40 GPKKVLVIGASSGYGLASRIAAAF-GAGA-DTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEI 117 (398)
T ss_pred CCCEEEEECCCchHhHHHHHHHHH-HcCC-eEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHH
Confidence 57899999999999999 89999 9997 66666643211 122333444456677889999999999
Q ss_pred HHHHHHHHHHcCCCCcEEEEccccCCCCCC----------------C-----------------CCCCHHHHHHHHhhhh
Q 018819 151 VRQFVDTFRRSGRPLDVLVCNAAVYLPTAK----------------E-----------------PTFTAEGFELSVGTNH 197 (350)
Q Consensus 151 v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~----------------~-----------------~~~~~~~~~~~~~~n~ 197 (350)
++++++++.+.+|+||+||||+|......+ + ...+.++++.++. +
T Consensus 118 v~~lie~I~e~~G~IDiLVnSaA~~~r~~p~~g~~~~s~lKpi~~~~~~~~~d~~~~~i~~~s~~~~~~~ei~~Tv~--v 195 (398)
T PRK13656 118 KQKVIELIKQDLGQVDLVVYSLASPRRTDPKTGEVYRSVLKPIGEPYTGKTLDTDKDVIIEVTVEPATEEEIADTVK--V 195 (398)
T ss_pred HHHHHHHHHHhcCCCCEEEECCccCCCCCcccCceeecccccccccccCCcccccccceeEEEEeeCCHHHHHHHHH--h
Confidence 999999999999999999999998632110 1 1244555555543 3
Q ss_pred HHH-----HHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCch-
Q 018819 198 LGH-----FLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGA- 271 (350)
Q Consensus 198 ~g~-----~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 271 (350)
+|. |.=.....+.|.+ ++++|-+|++..... +|.+
T Consensus 196 Mggedw~~Wi~al~~a~lla~----g~~~va~TY~G~~~t-----------------------------------~p~Y~ 236 (398)
T PRK13656 196 MGGEDWELWIDALDEAGVLAE----GAKTVAYSYIGPELT-----------------------------------HPIYW 236 (398)
T ss_pred hccchHHHHHHHHHhcccccC----CcEEEEEecCCccee-----------------------------------ecccC
Confidence 343 2223444455544 469999998765531 2222
Q ss_pred -hchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 272 -KAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 272 -~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
..-+.+|++++..++.++.++ .+.||++|++.+|.+.|..
T Consensus 237 ~g~mG~AKa~LE~~~r~La~~L-~~~giran~i~~g~~~T~A 277 (398)
T PRK13656 237 DGTIGKAKKDLDRTALALNEKL-AAKGGDAYVSVLKAVVTQA 277 (398)
T ss_pred CchHHHHHHHHHHHHHHHHHHh-hhcCCEEEEEecCcccchh
Confidence 355899999999999999999 6779999999999999964
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-18 Score=158.13 Aligned_cols=218 Identities=12% Similarity=0.036 Sum_probs=141.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChh--HHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL--KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~--~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
+++++|||||+|+||++++++|+++| ++|+++.|+.. ........+...+.++.++.+|++|.+++.+++.
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~Ll~~G-~~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~------ 77 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRLLSRG-YTVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDALK------ 77 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHHHc------
Confidence 46799999999999999999999999 58998888532 2222233332223468889999999998876554
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
..|+++|.++.... .+ ++++.++++|+.|++++++++.+.+. .++||++||.++..........
T Consensus 78 -~~d~v~~~~~~~~~------~~-~~~~~~~~~nv~gt~~ll~aa~~~~~-----v~riV~~SS~~a~~~~~~~~~~--- 141 (297)
T PLN02583 78 -GCSGLFCCFDPPSD------YP-SYDEKMVDVEVRAAHNVLEACAQTDT-----IEKVVFTSSLTAVIWRDDNIST--- 141 (297)
T ss_pred -CCCEEEEeCccCCc------cc-ccHHHHHHHHHHHHHHHHHHHHhcCC-----ccEEEEecchHheecccccCCC---
Confidence 58899987654211 11 24678999999999999999877541 2499999998775311000000
Q ss_pred CccccccccccCCCCCCCcccCCCCC------CchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccccc
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDF------DGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 316 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~ 316 (350)
..+..+..+. .....|+.||...+.+++.++++. |+++++|+|++|.+|.....
T Consensus 142 ----------------~~~~~E~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~~----gi~~v~lrp~~v~Gp~~~~~ 201 (297)
T PLN02583 142 ----------------QKDVDERSWSDQNFCRKFKLWHALAKTLSEKTAWALAMDR----GVNMVSINAGLLMGPSLTQH 201 (297)
T ss_pred ----------------CCCCCcccCCCHHHHhhcccHHHHHHHHHHHHHHHHHHHh----CCcEEEEcCCcccCCCCCCc
Confidence 0001111000 112369999999998888776653 89999999999999865321
Q ss_pred chhhHHhhhhhhHHhhhcCccchhhhhhhcc
Q 018819 317 HIPLFRLLFPPFQKYITKGYVSEDEAGKRLA 347 (350)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~ 347 (350)
. +......+.. ..-...++.++++|+.++
T Consensus 202 ~-~~~~~~~~~~-~~~~~~~v~V~Dva~a~~ 230 (297)
T PLN02583 202 N-PYLKGAAQMY-ENGVLVTVDVNFLVDAHI 230 (297)
T ss_pred h-hhhcCCcccC-cccCcceEEHHHHHHHHH
Confidence 1 1111000000 001123677888887654
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.7e-18 Score=158.59 Aligned_cols=201 Identities=17% Similarity=0.132 Sum_probs=135.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.++++|||||+|+||.+++++|+++| ++|++++|+..........+.. +.++.++.+|++|.+++.++++ .
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~-------~ 79 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRG-YTVHATLRDPAKSLHLLSKWKE-GDRLRLFRADLQEEGSFDEAVK-------G 79 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHhhcc-CCeEEEEECCCCCHHHHHHHHc-------C
Confidence 56689999999999999999999999 5898888886655554444432 3568899999999998887764 4
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHH--HHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGF--ELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~--~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+|+|||+|+...........+.+.+ ..++++|+.|+.++++++.+... .++||++||.+.+... .....
T Consensus 80 ~d~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~-----~~~~v~~SS~~vyg~~-~~~~~--- 150 (353)
T PLN02896 80 CDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKT-----VKRVVFTSSISTLTAK-DSNGR--- 150 (353)
T ss_pred CCEEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCC-----ccEEEEEechhhcccc-ccCCC---
Confidence 8999999997543211112233333 45778889999999999876421 2489999998655311 00000
Q ss_pred CccccccccccCCCCCCCcccC-CCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccc
Q 018819 243 NLGDLRGFAGGLNGLNSSSMID-GGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~ 314 (350)
+.. .+.+....+..+ ..+.+....|+.||.+.+.+++.+++++ |++++++.|+.|.+|+..
T Consensus 151 -~~~------~~~E~~~~p~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----~~~~~~lR~~~vyGp~~~ 212 (353)
T PLN02896 151 -WRA------VVDETCQTPIDHVWNTKASGWVYVLSKLLTEEAAFKYAKEN----GIDLVSVITTTVAGPFLT 212 (353)
T ss_pred -CCC------ccCcccCCcHHHhhccCCCCccHHHHHHHHHHHHHHHHHHc----CCeEEEEcCCcccCCCcC
Confidence 000 000000000000 0011234579999999999998887665 899999999999998653
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.6e-18 Score=157.02 Aligned_cols=193 Identities=19% Similarity=0.150 Sum_probs=130.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhc--cCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG--MAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~--~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
..++++|||||+|+||.+++++|+++| ++|+++.|+....+....... ....++.++.+|++|.+++.++++
T Consensus 3 ~~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (322)
T PLN02986 3 GGGKLVCVTGASGYIASWIVKLLLLRG-YTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIE----- 76 (322)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHh-----
Confidence 357899999999999999999999999 589888887654333322221 112468889999999998888776
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
.+|+|||+|+.... .. .+.+...+++|+.|+.++++++.... + -++||++||.+......+...+ .
T Consensus 77 --~~d~vih~A~~~~~--~~----~~~~~~~~~~nv~gt~~ll~~~~~~~---~--v~rvV~~SS~~~~~~~~~~~~~-~ 142 (322)
T PLN02986 77 --GCDAVFHTASPVFF--TV----KDPQTELIDPALKGTINVLNTCKETP---S--VKRVILTSSTAAVLFRQPPIEA-N 142 (322)
T ss_pred --CCCEEEEeCCCcCC--CC----CCchhhhhHHHHHHHHHHHHHHHhcC---C--ccEEEEecchhheecCCccCCC-C
Confidence 48999999996422 11 12235678999999999999875421 1 2489999998764211000000 0
Q ss_pred CCccccccccccCCCCCCCcccCCC-CCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGG-DFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
. ..+...+.... .......|+.||.+.+.+++.+.+++ |+++++++|+.|.+|+.
T Consensus 143 ~-------------~~~E~~~~~p~~~~~~~~~Y~~sK~~aE~~~~~~~~~~----~~~~~~lrp~~v~Gp~~ 198 (322)
T PLN02986 143 D-------------VVDETFFSDPSLCRETKNWYPLSKILAENAAWEFAKDN----GIDMVVLNPGFICGPLL 198 (322)
T ss_pred C-------------CcCcccCCChHHhhccccchHHHHHHHHHHHHHHHHHh----CCeEEEEcccceeCCCC
Confidence 0 00000000000 00124679999999888888777664 89999999999999864
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.4e-18 Score=158.78 Aligned_cols=173 Identities=14% Similarity=0.111 Sum_probs=123.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhH-----HHHHHHHhccCCCceEEEEccCCCHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK-----AERAAKSAGMAKENYTIMHLDLASLDSVRQFVDT 157 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~-----~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~ 157 (350)
+++++++|||||+|+||.+++++|+++| ++|++++|+... .+.........+.++.++.+|++|.+++.++++.
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 81 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLSKG-YEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDD 81 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCC-CEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHH
Confidence 4578899999999999999999999999 588888876432 2211111111234688999999999999998886
Q ss_pred HHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCC
Q 018819 158 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237 (350)
Q Consensus 158 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~ 237 (350)
+ .+|+|||+|+.... ....+..+..+++|+.|+.++++++.+.+.+++. --+||++||.+.+ |...
T Consensus 82 ~-----~~d~Vih~A~~~~~-----~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~-~~~~v~~Ss~~vy-g~~~-- 147 (340)
T PLN02653 82 I-----KPDEVYNLAAQSHV-----AVSFEMPDYTADVVATGALRLLEAVRLHGQETGR-QIKYYQAGSSEMY-GSTP-- 147 (340)
T ss_pred c-----CCCEEEECCcccch-----hhhhhChhHHHHHHHHHHHHHHHHHHHhcccccc-ceeEEEeccHHHh-CCCC--
Confidence 5 59999999997532 1233456778899999999999999887654210 1268888876433 2100
Q ss_pred CCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhh
Q 018819 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRF 292 (350)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~ 292 (350)
.+..+..+..+...|+.||.+.+.+++.++.++
T Consensus 148 ----------------------~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~ 180 (340)
T PLN02653 148 ----------------------PPQSETTPFHPRSPYAVAKVAAHWYTVNYREAY 180 (340)
T ss_pred ----------------------CCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHc
Confidence 011222334456789999999999999988876
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-17 Score=161.35 Aligned_cols=201 Identities=15% Similarity=0.159 Sum_probs=134.7
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh---hH--------------HHHHHHHh-ccCCCceEEEEc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF---LK--------------AERAAKSA-GMAKENYTIMHL 143 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~---~~--------------~~~~~~~l-~~~~~~v~~~~~ 143 (350)
..++++++|||||+|+||++++++|+++|+ .|+++++.. .. .+.+ +.+ ...+.++.++.+
T Consensus 43 ~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~v~~v~~ 120 (442)
T PLN02572 43 SSSKKKKVMVIGGDGYCGWATALHLSKRGY-EVAIVDNLCRRLFDHQLGLDSLTPIASIHERV-RRWKEVSGKEIELYVG 120 (442)
T ss_pred ccccCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeccccccccccccccccccccchHHHH-HHHHHhhCCcceEEEC
Confidence 356788999999999999999999999994 888875421 10 0111 111 111335889999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEE
Q 018819 144 DLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLII 223 (350)
Q Consensus 144 Dvs~~~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~ 223 (350)
|++|.+++.++++.. ++|+|||+|+... ......+.++++..+++|+.|++++++++...-. ..+||+
T Consensus 121 Dl~d~~~v~~~l~~~-----~~D~ViHlAa~~~--~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv-----~~~~V~ 188 (442)
T PLN02572 121 DICDFEFLSEAFKSF-----EPDAVVHFGEQRS--APYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAP-----DCHLVK 188 (442)
T ss_pred CCCCHHHHHHHHHhC-----CCCEEEECCCccc--ChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCC-----CccEEE
Confidence 999999999988864 6999999997632 2233345566788899999999999998865421 137999
Q ss_pred EeccCCCCCCCCCCCCCCCCccccccccccCCCCCCCcccC--CCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEE
Q 018819 224 VGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMID--GGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFA 301 (350)
Q Consensus 224 vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~ 301 (350)
+||...+ |.... + ..+ ..+. .+.....+ +.+..+...|+.||.+.+.+++.++.++ |+++.
T Consensus 189 ~SS~~vY-G~~~~--~-~~E-~~i~--------~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~----gl~~v 251 (442)
T PLN02572 189 LGTMGEY-GTPNI--D-IEE-GYIT--------ITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW----GIRAT 251 (442)
T ss_pred Eecceec-CCCCC--C-Ccc-cccc--------cccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhc----CCCEE
Confidence 9998644 21000 0 000 0000 00000000 0122345689999999888888777665 89999
Q ss_pred EeeCCcccCCcc
Q 018819 302 SLYPGCIATTGL 313 (350)
Q Consensus 302 ~v~PG~v~t~~~ 313 (350)
++.|+.|.+|+.
T Consensus 252 ~lR~~~vyGp~~ 263 (442)
T PLN02572 252 DLNQGVVYGVRT 263 (442)
T ss_pred EEecccccCCCC
Confidence 999999999863
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=99.79 E-value=9e-18 Score=158.00 Aligned_cols=193 Identities=15% Similarity=0.113 Sum_probs=131.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccC--CCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~--~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
..+++|||||+|.||.++++.|+++| ++|+++.|+.............. ..++.++.+|++|.+.+.++++
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~------ 76 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERG-YTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIR------ 76 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCC-CEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHh------
Confidence 45689999999999999999999999 58998888765544433322211 2357889999999998887765
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
.+|+|||+|+.... .. .+.++..+++|+.|++++++++.+... .++||++||.....+. ....+
T Consensus 77 -~~d~ViH~A~~~~~----~~--~~~~~~~~~~Nv~gt~~ll~aa~~~~~-----~~r~v~~SS~~~~~~~-~~~~~--- 140 (351)
T PLN02650 77 -GCTGVFHVATPMDF----ES--KDPENEVIKPTVNGMLSIMKACAKAKT-----VRRIVFTSSAGTVNVE-EHQKP--- 140 (351)
T ss_pred -CCCEEEEeCCCCCC----CC--CCchhhhhhHHHHHHHHHHHHHHhcCC-----ceEEEEecchhhcccC-CCCCC---
Confidence 48999999986421 11 122357789999999999999876431 1389999998544221 00000
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.+.+- ......... .+..+...|+.||.+.+.+++.++.++ |++++.++|+.|.+|..
T Consensus 141 ~~~E~--------~~~~~~~~~-~~~~~~~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilRp~~v~Gp~~ 198 (351)
T PLN02650 141 VYDED--------CWSDLDFCR-RKKMTGWMYFVSKTLAEKAAWKYAAEN----GLDFISIIPTLVVGPFI 198 (351)
T ss_pred ccCcc--------cCCchhhhh-ccccccchHHHHHHHHHHHHHHHHHHc----CCeEEEECCCceECCCC
Confidence 00000 000000000 011123579999999999998887764 89999999999999864
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-17 Score=156.53 Aligned_cols=187 Identities=18% Similarity=0.148 Sum_probs=132.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHH-HHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAER-AAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~-~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
++++++|||||+|+||+++++.|+++| +.|+++.|+.+.... ....+.....++.++.+|++|.+++.++++
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------ 80 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERG-YTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAID------ 80 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHh------
Confidence 467799999999999999999999999 589999887544221 122232222357889999999998888775
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
++|+|||+|+... ++++..+++|+.|+.++++++...- -++||++||..+..+..... +..
T Consensus 81 -~~d~Vih~A~~~~----------~~~~~~~~~nv~gt~~ll~aa~~~~------v~r~V~~SS~~avyg~~~~~-~~~- 141 (342)
T PLN02214 81 -GCDGVFHTASPVT----------DDPEQMVEPAVNGAKFVINAAAEAK------VKRVVITSSIGAVYMDPNRD-PEA- 141 (342)
T ss_pred -cCCEEEEecCCCC----------CCHHHHHHHHHHHHHHHHHHHHhcC------CCEEEEeccceeeeccCCCC-CCc-
Confidence 5899999998631 1356789999999999999986531 24899999987654321100 000
Q ss_pred CccccccccccCCCCCCCcccC-CCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 243 NLGDLRGFAGGLNGLNSSSMID-GGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
..+...+.. ..+......|+.||.+.+.+++.++.++ |+++++++|+.|..|..
T Consensus 142 -------------~~~E~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~----g~~~v~lRp~~vyGp~~ 196 (342)
T PLN02214 142 -------------VVDESCWSDLDFCKNTKNWYCYGKMVAEQAAWETAKEK----GVDLVVLNPVLVLGPPL 196 (342)
T ss_pred -------------ccCcccCCChhhccccccHHHHHHHHHHHHHHHHHHHc----CCcEEEEeCCceECCCC
Confidence 000000000 0011234679999999999988877665 89999999999999864
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-17 Score=156.76 Aligned_cols=189 Identities=12% Similarity=0.113 Sum_probs=133.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhH--HHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK--AERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~--~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+++|||||+|+||.++++.|.++|...|++.++.... ..... .+. .+.++.++.+|++|.++++++++.. +
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~-----~ 74 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLA-PVA-QSERFAFEKVDICDRAELARVFTEH-----Q 74 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccccchhhhh-hcc-cCCceEEEECCCcChHHHHHHHhhc-----C
Confidence 4799999999999999999999996445555554221 11111 111 2346778899999999998887752 6
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHh---cCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLK---QSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~---~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
+|+|||+||.... +.+.++++..+++|+.|++++++++.+.+. ....+..++|++||.+.+ +...+
T Consensus 75 ~D~Vih~A~~~~~-----~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vy-g~~~~----- 143 (355)
T PRK10217 75 PDCVMHLAAESHV-----DRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVY-GDLHS----- 143 (355)
T ss_pred CCEEEECCcccCc-----chhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhc-CCCCC-----
Confidence 9999999997532 234567789999999999999999987532 111012489999987543 21000
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
...+..+..+..+...|+.||.+.+.+++.+++++ ++++..+.|+.+..|..
T Consensus 144 ----------------~~~~~~E~~~~~p~s~Y~~sK~~~e~~~~~~~~~~----~~~~~i~r~~~v~Gp~~ 195 (355)
T PRK10217 144 ----------------TDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTY----GLPTLITNCSNNYGPYH 195 (355)
T ss_pred ----------------CCCCcCCCCCCCCCChhHHHHHHHHHHHHHHHHHh----CCCeEEEeeeeeeCCCC
Confidence 00112222334456789999999999999888775 88999999999988864
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-17 Score=157.14 Aligned_cols=210 Identities=17% Similarity=0.178 Sum_probs=164.8
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccC--CCceEEEEccCCCHHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~--~~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
..++||++|||||+|.||.++++++++.+..++++.+|++-+......++... ..+..++-+|+.|.+.++++++..
T Consensus 246 ~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~- 324 (588)
T COG1086 246 AMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGH- 324 (588)
T ss_pred hHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcC-
Confidence 35789999999999999999999999999999999999998888888887653 467889999999999999988864
Q ss_pred HcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCC
Q 018819 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (350)
++|+++|.|+.-+- |+ -+.++.+.+.+|++|+.++.+++...-.+ ++|++|+--+.
T Consensus 325 ----kvd~VfHAAA~KHV--Pl---~E~nP~Eai~tNV~GT~nv~~aa~~~~V~------~~V~iSTDKAV--------- 380 (588)
T COG1086 325 ----KVDIVFHAAALKHV--PL---VEYNPEEAIKTNVLGTENVAEAAIKNGVK------KFVLISTDKAV--------- 380 (588)
T ss_pred ----CCceEEEhhhhccC--cc---hhcCHHHHHHHhhHhHHHHHHHHHHhCCC------EEEEEecCccc---------
Confidence 79999999997432 22 23456778999999999999999876544 89999997766
Q ss_pred CCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchh
Q 018819 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (350)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~ 319 (350)
.+...|++||...+.++++++.+. ...+.+..+|.-|.|... ...-.|
T Consensus 381 -----------------------------~PtNvmGaTKr~aE~~~~a~~~~~-~~~~T~f~~VRFGNVlGS--rGSViP 428 (588)
T COG1086 381 -----------------------------NPTNVMGATKRLAEKLFQAANRNV-SGTGTRFCVVRFGNVLGS--RGSVIP 428 (588)
T ss_pred -----------------------------CCchHhhHHHHHHHHHHHHHhhcc-CCCCcEEEEEEecceecC--CCCCHH
Confidence 355789999999999999998876 333789999999999764 334455
Q ss_pred hHHhhhhh------hHHhhhcCccchhhhhhhccc
Q 018819 320 LFRLLFPP------FQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 320 ~~~~~~~~------~~~~~~~~~~s~~~~a~~i~~ 348 (350)
+++..... -.....+.++|.+|+++-+++
T Consensus 429 lFk~QI~~GgplTvTdp~mtRyfMTI~EAv~LVlq 463 (588)
T COG1086 429 LFKKQIAEGGPLTVTDPDMTRFFMTIPEAVQLVLQ 463 (588)
T ss_pred HHHHHHHcCCCccccCCCceeEEEEHHHHHHHHHH
Confidence 54432211 111123556888888877653
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.4e-17 Score=147.02 Aligned_cols=194 Identities=19% Similarity=0.122 Sum_probs=140.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHH--HHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAER--AAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~--~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|+||||+|.||..+++.|+++| +.|..+.|++++.+. ....++..+.+...+..|++|++++.++++
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rG-Y~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~------ 77 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRG-YTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAID------ 77 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCC-CEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHh------
Confidence 56799999999999999999999999 699999999776444 355566556679999999999999999888
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
++|+|+|.|...... ..+ .-.+.+++.+.|+.++++++...- . -.|||++||.++.....+.
T Consensus 78 -gcdgVfH~Asp~~~~----~~~--~e~~li~pav~Gt~nVL~ac~~~~---s--VkrvV~TSS~aAv~~~~~~------ 139 (327)
T KOG1502|consen 78 -GCDGVFHTASPVDFD----LED--PEKELIDPAVKGTKNVLEACKKTK---S--VKRVVYTSSTAAVRYNGPN------ 139 (327)
T ss_pred -CCCEEEEeCccCCCC----CCC--cHHhhhhHHHHHHHHHHHHHhccC---C--cceEEEeccHHHhccCCcC------
Confidence 699999999875331 111 123689999999999999987653 0 1399999999987532100
Q ss_pred CccccccccccCCCCCCCcccCCCC-CCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccc
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGD-FDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 315 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~ 315 (350)
.+.....+...|.+..- ......|+.||..-+..+..++.| .|+...+|+||.|-+|.+..
T Consensus 140 --------~~~~~vvdE~~wsd~~~~~~~~~~Y~~sK~lAEkaAw~fa~e----~~~~lv~inP~lV~GP~l~~ 201 (327)
T KOG1502|consen 140 --------IGENSVVDEESWSDLDFCRCKKLWYALSKTLAEKAAWEFAKE----NGLDLVTINPGLVFGPGLQP 201 (327)
T ss_pred --------CCCCcccccccCCcHHHHHhhHHHHHHHHHHHHHHHHHHHHh----CCccEEEecCCceECCCccc
Confidence 01111122222222110 012257999998877766666665 48999999999999998765
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.3e-17 Score=151.78 Aligned_cols=168 Identities=15% Similarity=0.112 Sum_probs=118.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhH-----HHHHHHHh-ccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK-----AERAAKSA-GMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~-----~~~~~~~l-~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
|++|||||+|+||.+++++|+++| ++|++++|+... .+...... ...+.++.++.+|++|.+++.++++.+
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~-- 77 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKG-YEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEI-- 77 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCC-CEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhC--
Confidence 589999999999999999999999 589988887431 22211111 111345889999999999999888864
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
++|+|||+|+..... ...+.....+++|+.|+.++++++.+.-.++ ..++|++||...+ |....
T Consensus 78 ---~~d~ViH~Aa~~~~~-----~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~---~~~~v~~SS~~vy-g~~~~---- 141 (343)
T TIGR01472 78 ---KPTEIYNLAAQSHVK-----VSFEIPEYTADVDGIGTLRLLEAVRTLGLIK---SVKFYQASTSELY-GKVQE---- 141 (343)
T ss_pred ---CCCEEEECCcccccc-----hhhhChHHHHHHHHHHHHHHHHHHHHhCCCc---CeeEEEeccHHhh-CCCCC----
Confidence 589999999975321 1223345677899999999999987642221 1279999997543 21000
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRF 292 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~ 292 (350)
.+..+..+..+...|+.||.+.+.+++.++.++
T Consensus 142 -------------------~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~ 174 (343)
T TIGR01472 142 -------------------IPQNETTPFYPRSPYAAAKLYAHWITVNYREAY 174 (343)
T ss_pred -------------------CCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHh
Confidence 011222334456789999999999999988775
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.6e-17 Score=151.21 Aligned_cols=186 Identities=18% Similarity=0.141 Sum_probs=127.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHh--ccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA--GMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l--~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
+++++|||||+|+||++++++|+++| +.|+++.|+........... .....++.++.+|++|++++..+++
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 75 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRG-YTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVD------ 75 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCC-CEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHc------
Confidence 46799999999999999999999999 58888888754332222111 1112468899999999988877765
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCC-CCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN-TNTLAGNVPPK 241 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~-~~~~~~~~~~~ 241 (350)
.+|+|||+|+.... .. .. ..+..+++|+.|+.++++++.... + ..+||++||.++. .+..+. .+
T Consensus 76 -~~d~Vih~A~~~~~--~~--~~--~~~~~~~~nv~gt~~ll~a~~~~~---~--~~~~v~~SS~~~~~y~~~~~-~~-- 140 (322)
T PLN02662 76 -GCEGVFHTASPFYH--DV--TD--PQAELIDPAVKGTLNVLRSCAKVP---S--VKRVVVTSSMAAVAYNGKPL-TP-- 140 (322)
T ss_pred -CCCEEEEeCCcccC--CC--CC--hHHHHHHHHHHHHHHHHHHHHhCC---C--CCEEEEccCHHHhcCCCcCC-CC--
Confidence 58999999986421 11 11 124688999999999999976431 1 2489999998643 211000 00
Q ss_pred CCccccccccccCCCCCCCcccCCCCC------CchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDF------DGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
..+..+..+. .....|+.+|.+.+.+++.+.+++ |++++.++|+.+.+|..
T Consensus 141 -----------------~~~~~E~~~~~p~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----~~~~~~lRp~~v~Gp~~ 197 (322)
T PLN02662 141 -----------------DVVVDETWFSDPAFCEESKLWYVLSKTLAEEAAWKFAKEN----GIDMVTINPAMVIGPLL 197 (322)
T ss_pred -----------------CCcCCcccCCChhHhhcccchHHHHHHHHHHHHHHHHHHc----CCcEEEEeCCcccCCCC
Confidence 0001111111 112479999999888888776654 89999999999999864
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-16 Score=150.03 Aligned_cols=194 Identities=15% Similarity=0.111 Sum_probs=130.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHH--HHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA--KSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~--~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
++++++|||||+|+||++++++|+++|+ +|+++.|+........ ..+... .++.++.+|++|.+++.++++
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~d~~~~~~~~~----- 79 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKGY-AVNTTVRDPENQKKIAHLRALQEL-GDLKIFGADLTDEESFEAPIA----- 79 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCCC-EEEEEECCCCCHHHHHHHHhcCCC-CceEEEEcCCCChHHHHHHHh-----
Confidence 3567999999999999999999999994 8888888754332221 122211 257889999999998887765
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCC-CCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTL-AGNVPP 240 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~-~~~~~~ 240 (350)
++|+|||+|+... .. ..+.+...+++|+.|+.++++++.+.. + .++||++||.+.+.... .+...+
T Consensus 80 --~~d~vih~A~~~~----~~--~~~~~~~~~~~nv~g~~~ll~a~~~~~---~--~~~~v~~SS~~~~g~~~~~~~~~~ 146 (338)
T PLN00198 80 --GCDLVFHVATPVN----FA--SEDPENDMIKPAIQGVHNVLKACAKAK---S--VKRVILTSSAAAVSINKLSGTGLV 146 (338)
T ss_pred --cCCEEEEeCCCCc----cC--CCChHHHHHHHHHHHHHHHHHHHHhcC---C--ccEEEEeecceeeeccCCCCCCce
Confidence 5899999998531 11 112345678999999999999986532 1 24999999986552110 000000
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
. . + ..++.... ...+.++...|+.||.+.+.+++.++.++ |++++++.|+.|.+|..
T Consensus 147 ~-~-E---------~~~~~~~~-~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~~~~~~~R~~~vyGp~~ 203 (338)
T PLN00198 147 M-N-E---------KNWTDVEF-LTSEKPPTWGYPASKTLAEKAAWKFAEEN----NIDLITVIPTLMAGPSL 203 (338)
T ss_pred e-c-c---------ccCCchhh-hhhcCCccchhHHHHHHHHHHHHHHHHhc----CceEEEEeCCceECCCc
Confidence 0 0 0 00000000 00112345679999999999888877664 89999999999999863
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-16 Score=149.43 Aligned_cols=184 Identities=15% Similarity=0.136 Sum_probs=129.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHH----HHHHHHhccCCCceEEEEccCCCHHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKA----ERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 158 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~----~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~ 158 (350)
.+.++++|||||+|+||.+++++|+++| ++|++++|..... ..........+.++.++.+|++|++++.++++..
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~ 80 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLAG-YKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFAST 80 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhC
Confidence 4678899999999999999999999999 5888887643221 1222211122346788999999999998887753
Q ss_pred HHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCC
Q 018819 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (350)
Q Consensus 159 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (350)
.+|+|||+|+.... ..+.+++...+++|+.++.++++++... + .++||++||... .+...
T Consensus 81 -----~~d~vih~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~--~~~~v~~Ss~~v-yg~~~--- 140 (352)
T PLN02240 81 -----RFDAVIHFAGLKAV-----GESVAKPLLYYDNNLVGTINLLEVMAKH----G--CKKLVFSSSATV-YGQPE--- 140 (352)
T ss_pred -----CCCEEEEccccCCc-----cccccCHHHHHHHHHHHHHHHHHHHHHc----C--CCEEEEEccHHH-hCCCC---
Confidence 69999999997432 1234567789999999999999876432 1 248999999643 22100
Q ss_pred CCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccC
Q 018819 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIAT 310 (350)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t 310 (350)
..+..+..+..+...|+.||.+.+.+++.++.+. .++++..+.|+.+..
T Consensus 141 --------------------~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~~R~~~v~G 189 (352)
T PLN02240 141 --------------------EVPCTEEFPLSATNPYGRTKLFIEEICRDIHASD---PEWKIILLRYFNPVG 189 (352)
T ss_pred --------------------CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCCCEEEEeecCcCC
Confidence 0112222334456789999999999998887552 367888888766554
|
|
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-16 Score=139.14 Aligned_cols=186 Identities=16% Similarity=0.181 Sum_probs=142.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC-cEEEEEecCh--hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 87 GSVIITGASSGLGLATAKALAETGK-WHIIMACRDF--LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga-~~Vi~~~r~~--~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
+++|||||.|.||.++++.+.++.. .+|+.++.-. ...+.+.... ...+..+++.|++|.+.+.+++++.
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~--~~~~~~fv~~DI~D~~~v~~~~~~~----- 73 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVE--DSPRYRFVQGDICDRELVDRLFKEY----- 73 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhh--cCCCceEEeccccCHHHHHHHHHhc-----
Confidence 3689999999999999999998874 3477776632 2222222222 1347899999999999999988864
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCC
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (350)
.+|++||-|+-...+. +.++....+++|+.|+++|++++..+..+ -+++.||.--.+ |..
T Consensus 74 ~~D~VvhfAAESHVDR-----SI~~P~~Fi~TNv~GT~~LLEaar~~~~~-----frf~HISTDEVY-G~l--------- 133 (340)
T COG1088 74 QPDAVVHFAAESHVDR-----SIDGPAPFIQTNVVGTYTLLEAARKYWGK-----FRFHHISTDEVY-GDL--------- 133 (340)
T ss_pred CCCeEEEechhccccc-----cccChhhhhhcchHHHHHHHHHHHHhccc-----ceEEEecccccc-ccc---------
Confidence 7999999999866533 45556678899999999999999887643 289999976533 211
Q ss_pred ccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccc
Q 018819 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 315 (350)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~ 315 (350)
..+...+.|..|+.+.++|++|||+-+.+++++.+.| |++++..++..-..|-.+.
T Consensus 134 ------------~~~~~~FtE~tp~~PsSPYSASKAasD~lVray~~TY----glp~~ItrcSNNYGPyqfp 189 (340)
T COG1088 134 ------------GLDDDAFTETTPYNPSSPYSASKAASDLLVRAYVRTY----GLPATITRCSNNYGPYQFP 189 (340)
T ss_pred ------------cCCCCCcccCCCCCCCCCcchhhhhHHHHHHHHHHHc----CCceEEecCCCCcCCCcCc
Confidence 1122356777889999999999999999999999988 9999999999888886543
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-17 Score=146.86 Aligned_cols=203 Identities=17% Similarity=0.187 Sum_probs=137.3
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhcc--CCCce----EEEEccCCCHHHHHHHHHHHHHcC
Q 018819 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM--AKENY----TIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 89 ~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~--~~~~v----~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
+|||||+|.||.+++++|++.+...|+++++++..+-.+..++.. .+.++ ..+.+|+.|.+.+..++++.
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~---- 76 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEY---- 76 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT------
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhc----
Confidence 699999999999999999999988999999999888888888742 22233 34578999999999988765
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
++|+++|.|+.-.. ++.+ +...+.+++|+.|+.++++++..+-.+ ++|++|+--+.
T Consensus 77 -~pdiVfHaAA~KhV--pl~E---~~p~eav~tNv~GT~nv~~aa~~~~v~------~~v~ISTDKAv------------ 132 (293)
T PF02719_consen 77 -KPDIVFHAAALKHV--PLME---DNPFEAVKTNVLGTQNVAEAAIEHGVE------RFVFISTDKAV------------ 132 (293)
T ss_dssp -T-SEEEE------H--HHHC---CCHHHHHHHHCHHHHHHHHHHHHTT-S------EEEEEEECGCS------------
T ss_pred -CCCEEEEChhcCCC--ChHH---hCHHHHHHHHHHHHHHHHHHHHHcCCC------EEEEccccccC------------
Confidence 79999999997432 2222 345678999999999999999876433 99999997665
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.+...|++||...+.++.+.+... ...+.++.+|.-|.|... ...-.|.+.
T Consensus 133 --------------------------~PtnvmGatKrlaE~l~~~~~~~~-~~~~t~f~~VRFGNVlgS--~GSVip~F~ 183 (293)
T PF02719_consen 133 --------------------------NPTNVMGATKRLAEKLVQAANQYS-GNSDTKFSSVRFGNVLGS--RGSVIPLFK 183 (293)
T ss_dssp --------------------------S--SHHHHHHHHHHHHHHHHCCTS-SSS--EEEEEEE-EETTG--TTSCHHHHH
T ss_pred --------------------------CCCcHHHHHHHHHHHHHHHHhhhC-CCCCcEEEEEEecceecC--CCcHHHHHH
Confidence 355789999999999999888765 445799999999999753 222334322
Q ss_pred hhh----hh--hHHhhhcCccchhhhhhhccc
Q 018819 323 LLF----PP--FQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 323 ~~~----~~--~~~~~~~~~~s~~~~a~~i~~ 348 (350)
... |. -.....+.++|++|+++.++.
T Consensus 184 ~Qi~~g~PlTvT~p~mtRffmti~EAv~Lvl~ 215 (293)
T PF02719_consen 184 KQIKNGGPLTVTDPDMTRFFMTIEEAVQLVLQ 215 (293)
T ss_dssp HHHHTTSSEEECETT-EEEEE-HHHHHHHHHH
T ss_pred HHHHcCCcceeCCCCcEEEEecHHHHHHHHHH
Confidence 211 11 011223557888998887653
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.7e-16 Score=145.31 Aligned_cols=182 Identities=14% Similarity=0.126 Sum_probs=129.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC-cEEEEEecCh--hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 88 SVIITGASSGLGLATAKALAETGK-WHIIMACRDF--LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga-~~Vi~~~r~~--~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+++||||+|+||.+++++|+++|. .+|++.+|.. ...+.. +.+.. ..++.++.+|++|++++.++++.. +
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~-----~ 73 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENL-ADLED-NPRYRFVKGDIGDRELVSRLFTEH-----Q 73 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhh-hhhcc-CCCcEEEEcCCcCHHHHHHHHhhc-----C
Confidence 389999999999999999999872 4788776632 111111 22221 235788899999999998887753 5
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
+|+|||+|+.... +.+.+.++..+++|+.++.++++++...+.+ .++|++||...+ +.....
T Consensus 74 ~d~vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~i~~Ss~~v~-g~~~~~------- 135 (317)
T TIGR01181 74 PDAVVHFAAESHV-----DRSISGPAAFIETNVVGTYTLLEAVRKYWHE-----FRFHHISTDEVY-GDLEKG------- 135 (317)
T ss_pred CCEEEEcccccCc-----hhhhhCHHHHHHHHHHHHHHHHHHHHhcCCC-----ceEEEeecccee-CCCCCC-------
Confidence 9999999997532 2244567788999999999999987654322 389999996543 210000
Q ss_pred cccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.+..+..+..+...|+.+|.+.+.+++.++.++ ++++.++.|+.+..+..
T Consensus 136 ---------------~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~i~R~~~i~G~~~ 185 (317)
T TIGR01181 136 ---------------DAFTETTPLAPSSPYSASKAASDHLVRAYHRTY----GLPALITRCSNNYGPYQ 185 (317)
T ss_pred ---------------CCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh----CCCeEEEEeccccCCCC
Confidence 011122233445689999999999999888775 89999999999988754
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.3e-16 Score=145.47 Aligned_cols=196 Identities=14% Similarity=0.143 Sum_probs=131.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh--hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDF--LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~--~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
++|||||+|+||.+++++|+++|...|+..++.. ...+... .+. .+.++.++.+|++|.+++.+++++. ++
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~-----~~ 74 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLA-DVS-DSERYVFEHADICDRAELDRIFAQH-----QP 74 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchHHHHH-hcc-cCCceEEEEecCCCHHHHHHHHHhc-----CC
Confidence 5899999999999999999999964465555432 1122221 121 1345778899999999999888752 69
Q ss_pred cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCC---CCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSD---YPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~---~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
|+|||+|+..... .+.+..+..+++|+.|+.++++++.+.|...+ .+..++|++||...+ +.... +
T Consensus 75 d~vih~A~~~~~~-----~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vy-g~~~~--~--- 143 (352)
T PRK10084 75 DAVMHLAAESHVD-----RSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVY-GDLPH--P--- 143 (352)
T ss_pred CEEEECCcccCCc-----chhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhc-CCCCc--c---
Confidence 9999999974321 12234567899999999999999987653211 002389999987643 21000 0
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.+... .....+..+..+..+...|+.||.+.+.+++.++.++ |+++..+.|+.|..|..
T Consensus 144 --~~~~~------~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----g~~~vilr~~~v~Gp~~ 202 (352)
T PRK10084 144 --DEVEN------SEELPLFTETTAYAPSSPYSASKASSDHLVRAWLRTY----GLPTIVTNCSNNYGPYH 202 (352)
T ss_pred --ccccc------cccCCCccccCCCCCCChhHHHHHHHHHHHHHHHHHh----CCCEEEEeccceeCCCc
Confidence 00000 0000012233344456789999999999999888775 78889999999988764
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=6e-16 Score=145.42 Aligned_cols=184 Identities=13% Similarity=0.029 Sum_probs=128.4
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHh----cc-CCCceEEEEccCCCHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA----GM-AKENYTIMHLDLASLDSVRQFVDT 157 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l----~~-~~~~v~~~~~Dvs~~~~v~~~~~~ 157 (350)
.++++++|||||+|.||.+++++|.++| +.|++++|............ .. ...++.++.+|++|.+++..+++
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~- 89 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLN-QTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACK- 89 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhh-
Confidence 4577899999999999999999999999 58988887543221111111 11 11357889999999888777765
Q ss_pred HHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCC
Q 018819 158 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237 (350)
Q Consensus 158 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~ 237 (350)
.+|+|||.|+..... .+.++....+++|+.|+.++++++... + ..+||++||...+ +....
T Consensus 90 ------~~d~ViHlAa~~~~~-----~~~~~~~~~~~~Nv~gt~nll~~~~~~----~--~~~~v~~SS~~vy-g~~~~- 150 (348)
T PRK15181 90 ------NVDYVLHQAALGSVP-----RSLKDPIATNSANIDGFLNMLTAARDA----H--VSSFTYAASSSTY-GDHPD- 150 (348)
T ss_pred ------CCCEEEECccccCch-----hhhhCHHHHHHHHHHHHHHHHHHHHHc----C--CCeEEEeechHhh-CCCCC-
Confidence 489999999974321 122334567899999999999987542 1 2389999987543 21000
Q ss_pred CCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.+..+..+..+...|+.||.+.+.+++.++.++ |+++..+.|+.|..|..
T Consensus 151 ----------------------~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~lR~~~vyGp~~ 200 (348)
T PRK15181 151 ----------------------LPKIEERIGRPLSPYAVTKYVNELYADVFARSY----EFNAIGLRYFNVFGRRQ 200 (348)
T ss_pred ----------------------CCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHh----CCCEEEEEecceeCcCC
Confidence 000111112234589999999998888776554 89999999999998853
|
|
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-16 Score=159.21 Aligned_cols=246 Identities=15% Similarity=0.146 Sum_probs=180.7
Q ss_pred ccccccCcccccccccceeeeeccccccccccchHHHHHHhhcccCCceecccccCCCCccccCCC-----cCccccCCC
Q 018819 13 FSVPKEGKTSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQRNGVVRAQTMATASPAVDVSSP-----QGKKTLRKG 87 (350)
Q Consensus 13 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~ 87 (350)
-+|.++|.+++.++.-. ...++++ -+++|||+|.+++|.|+++..-+.+.......+.+. .....-..|
T Consensus 1696 ~~Lv~eGIksGvV~PL~--ttvF~~~----qvE~AFRfMasGKHIGKVvikvr~eE~~k~~~pk~r~i~AI~rt~~hpek 1769 (2376)
T KOG1202|consen 1696 AALVAEGIKSGVVRPLP--TTVFHGQ----QVEDAFRFMASGKHIGKVVIKVRAEEPAKAKGPKPRLISAIPRTYCHPEK 1769 (2376)
T ss_pred HHHHHhhhccCceeccc--cccccHH----HHHHHHHHHhccCccceEEEEEcccccccccCCchhhHhhcchhhcCccc
Confidence 35667787776554321 1212222 569999999999999999887665433222111110 011123578
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhH---HHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLK---AERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~---~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+|+|+||.||.|+++|.||.++||+++++++|+.-+ ........+..|.++.+-..|++..+....++++.. +.++
T Consensus 1770 sYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGirtGYQa~~vrrWr~~GVqV~vsT~nitt~~ga~~Li~~s~-kl~~ 1848 (2376)
T KOG1202|consen 1770 SYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIRTGYQALMVRRWRRRGVQVQVSTSNITTAEGARGLIEESN-KLGP 1848 (2376)
T ss_pred eEEEeccccchhHHHHHHHHhcCceEEEEeccccchhhHHHHHHHHHHhcCeEEEEecccchhhhhHHHHHHHhh-hccc
Confidence 999999999999999999999999999999998422 233445567778888888889999998888888764 4679
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
+.+++|.|.+.++ ..+++.+.++|+.+-+.++.|+.+|-+.-...-..- ..||.+||++.-.|+
T Consensus 1849 vGGiFnLA~VLRD-~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~L----dyFv~FSSvscGRGN----------- 1912 (2376)
T KOG1202|consen 1849 VGGIFNLAAVLRD-GLIENQTPKNFKDVAKPKYSGTINLDRVSREICPEL----DYFVVFSSVSCGRGN----------- 1912 (2376)
T ss_pred ccchhhHHHHHHh-hhhcccChhHHHhhhccceeeeeehhhhhhhhCccc----ceEEEEEeecccCCC-----------
Confidence 9999999999876 889999999999999999999999987755443332 278888998865543
Q ss_pred cccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccC
Q 018819 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIAT 310 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t 310 (350)
.++..|+-+..+++.+++.-..+ |..=.+|..|.|-.
T Consensus 1913 ------------------------~GQtNYG~aNS~MERiceqRr~~-----GfPG~AiQWGAIGD 1949 (2376)
T KOG1202|consen 1913 ------------------------AGQTNYGLANSAMERICEQRRHE-----GFPGTAIQWGAIGD 1949 (2376)
T ss_pred ------------------------CcccccchhhHHHHHHHHHhhhc-----CCCcceeeeecccc
Confidence 58899999999998888644433 55556666666643
|
|
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-15 Score=133.53 Aligned_cols=167 Identities=16% Similarity=0.137 Sum_probs=127.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
++|||||+|-||.++++.|++.| +.|++++.-.....+...... +.+++.|+.|.+.+.+++++. +||.
T Consensus 2 ~iLVtGGAGYIGSHtv~~Ll~~G-~~vvV~DNL~~g~~~~v~~~~-----~~f~~gDi~D~~~L~~vf~~~-----~ida 70 (329)
T COG1087 2 KVLVTGGAGYIGSHTVRQLLKTG-HEVVVLDNLSNGHKIALLKLQ-----FKFYEGDLLDRALLTAVFEEN-----KIDA 70 (329)
T ss_pred eEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCCHHHhhhcc-----CceEEeccccHHHHHHHHHhc-----CCCE
Confidence 79999999999999999999999 577777764322222222211 579999999999999998875 7999
Q ss_pred EEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcccc
Q 018819 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (350)
Q Consensus 168 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (350)
|||.||...- ..+.++..+.++-|+.|++.|++++...-.+ .||| ||.++..|.
T Consensus 71 ViHFAa~~~V-----gESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~------~~vF-SStAavYG~-------------- 124 (329)
T COG1087 71 VVHFAASISV-----GESVQNPLKYYDNNVVGTLNLIEAMLQTGVK------KFIF-SSTAAVYGE-------------- 124 (329)
T ss_pred EEECcccccc-----chhhhCHHHHHhhchHhHHHHHHHHHHhCCC------EEEE-ecchhhcCC--------------
Confidence 9999997543 2467778889999999999999987655332 6666 445555542
Q ss_pred ccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEee
Q 018819 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLY 304 (350)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~ 304 (350)
....++.|..+..+..+|+.||.+.+.+.+++++.+ ++++.++.
T Consensus 125 ---------p~~~PI~E~~~~~p~NPYG~sKlm~E~iL~d~~~a~----~~~~v~LR 168 (329)
T COG1087 125 ---------PTTSPISETSPLAPINPYGRSKLMSEEILRDAAKAN----PFKVVILR 168 (329)
T ss_pred ---------CCCcccCCCCCCCCCCcchhHHHHHHHHHHHHHHhC----CCcEEEEE
Confidence 223456666777788899999999999999888775 67777764
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.5e-15 Score=142.10 Aligned_cols=193 Identities=16% Similarity=0.134 Sum_probs=129.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccC------CCceEEEEccCCCHHHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA------KENYTIMHLDLASLDSVRQFVD 156 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~------~~~v~~~~~Dvs~~~~v~~~~~ 156 (350)
..++|++|||||+|+||.++++.|+++| +.|+++.|+.+..+.+. .+... ...+.++.+|++|.+++.++++
T Consensus 50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G-~~V~~~~r~~~~~~~l~-~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~ 127 (367)
T PLN02686 50 DAEARLVCVTGGVSFLGLAIVDRLLRHG-YSVRIAVDTQEDKEKLR-EMEMFGEMGRSNDGIWTVMANLTEPESLHEAFD 127 (367)
T ss_pred CCCCCEEEEECCchHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHH-HHhhhccccccCCceEEEEcCCCCHHHHHHHHH
Confidence 4578899999999999999999999999 48888888765544432 22111 1257889999999999888776
Q ss_pred HHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCC-CCCCC-
Q 018819 157 TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG-NTNTL- 234 (350)
Q Consensus 157 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~-~~~~~- 234 (350)
.+|.+||.|+...... ... ..+...++|+.++.++++++...- + -.++|++||.++ ..+..
T Consensus 128 -------~~d~V~hlA~~~~~~~-~~~----~~~~~~~~nv~gt~~llea~~~~~---~--v~r~V~~SS~~~~vyg~~~ 190 (367)
T PLN02686 128 -------GCAGVFHTSAFVDPAG-LSG----YTKSMAELEAKASENVIEACVRTE---S--VRKCVFTSSLLACVWRQNY 190 (367)
T ss_pred -------hccEEEecCeeecccc-ccc----ccchhhhhhHHHHHHHHHHHHhcC---C--ccEEEEeccHHHhcccccC
Confidence 3689999998753311 101 112445789999999999875321 1 138999999742 22210
Q ss_pred CCCCCCCCCccccccccccCCCCCCCcc-cCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 235 AGNVPPKANLGDLRGFAGGLNGLNSSSM-IDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
+...+.. .+...+ .+..+..+...|+.||.+.+.+++.++.++ |+++++++|+.|.+|..
T Consensus 191 ~~~~~~~---------------i~E~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----gl~~v~lRp~~vyGp~~ 251 (367)
T PLN02686 191 PHDLPPV---------------IDEESWSDESFCRDNKLWYALGKLKAEKAAWRAARGK----GLKLATICPALVTGPGF 251 (367)
T ss_pred CCCCCcc---------------cCCCCCCChhhcccccchHHHHHHHHHHHHHHHHHhc----CceEEEEcCCceECCCC
Confidence 0000000 000000 000112344579999999999998877664 89999999999999974
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.3e-15 Score=139.73 Aligned_cols=180 Identities=14% Similarity=0.104 Sum_probs=121.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhcc-CCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~-~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
++|||||+|+||.++++.|+++| ++|++++|...........+.. .+.++.++.+|++|.+++.++++. .++|
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~~d 75 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQNG-HDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHD-----HAID 75 (338)
T ss_pred eEEEECCCChHHHHHHHHHHHCC-CeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhc-----CCCC
Confidence 68999999999999999999999 5888877643222221111211 234567889999999998887764 2699
Q ss_pred EEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccc
Q 018819 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (350)
Q Consensus 167 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (350)
+|||+|+.... .. ..+.....+++|+.++.++++++.. .+ .++||++||...+ +...
T Consensus 76 ~vvh~a~~~~~-~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~~v~~Ss~~~y-g~~~----------- 132 (338)
T PRK10675 76 TVIHFAGLKAV-GE----SVQKPLEYYDNNVNGTLRLISAMRA----AN--VKNLIFSSSATVY-GDQP----------- 132 (338)
T ss_pred EEEECCccccc-cc----hhhCHHHHHHHHHHHHHHHHHHHHH----cC--CCEEEEeccHHhh-CCCC-----------
Confidence 99999987532 11 2233456789999999999887543 22 2489999997543 2100
Q ss_pred cccccccCCCCCCCcccCCCCC-CchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCC
Q 018819 247 LRGFAGGLNGLNSSSMIDGGDF-DGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (350)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~ 311 (350)
..++.+..+. .+...|+.+|.+.+.+++.++++. .++++..+.|+.+.++
T Consensus 133 ------------~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~~ilR~~~v~g~ 183 (338)
T PRK10675 133 ------------KIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQ---PDWSIALLRYFNPVGA 183 (338)
T ss_pred ------------CCccccccCCCCCCChhHHHHHHHHHHHHHHHHhc---CCCcEEEEEeeeecCC
Confidence 0011121222 245789999999999999887653 2678888877666553
|
|
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.2e-15 Score=138.72 Aligned_cols=179 Identities=14% Similarity=0.170 Sum_probs=125.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
++|||||+|+||..+++.|.++| ++|++.+|...............+ ++.++.+|+++.++++++++. +++|+
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g-~~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~-----~~~d~ 73 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESG-HEVVVLDNLSNGSPEALKRGERIT-RVTFVEGDLRDRELLDRLFEE-----HKIDA 73 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCC-CeEEEEeCCCccchhhhhhhcccc-ceEEEECCCCCHHHHHHHHHh-----CCCcE
Confidence 37999999999999999999999 478877664322222222222112 577889999999999888774 37999
Q ss_pred EEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcccc
Q 018819 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (350)
Q Consensus 168 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (350)
+|||||..... .+.++....+..|+.++.++++++... + .+++|++||...+ +....
T Consensus 74 vv~~ag~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~----~--~~~~v~~ss~~~~-g~~~~----------- 130 (328)
T TIGR01179 74 VIHFAGLIAVG-----ESVQDPLKYYRNNVVNTLNLLEAMQQT----G--VKKFIFSSSAAVY-GEPSS----------- 130 (328)
T ss_pred EEECccccCcc-----hhhcCchhhhhhhHHHHHHHHHHHHhc----C--CCEEEEecchhhc-CCCCC-----------
Confidence 99999975321 123345667889999999999876432 2 2489999886533 21000
Q ss_pred ccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCC
Q 018819 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (350)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~ 311 (350)
.+..+..+..+...|+.+|++.+.+++.++++. .++++..+.|+.+.++
T Consensus 131 ------------~~~~e~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~~~~~~ilR~~~v~g~ 179 (328)
T TIGR01179 131 ------------IPISEDSPLGPINPYGRSKLMSERILRDLSKAD---PGLSYVILRYFNVAGA 179 (328)
T ss_pred ------------CCccccCCCCCCCchHHHHHHHHHHHHHHHHhc---cCCCEEEEecCcccCC
Confidence 011112223355689999999999999887652 3899999999988876
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.6e-15 Score=137.88 Aligned_cols=171 Identities=22% Similarity=0.153 Sum_probs=124.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
+++||||+|+||..+++.|+++| ++|++++|+.+.... +. ...+.++.+|++|.+++.++++ .+|+
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~----~~--~~~~~~~~~D~~~~~~l~~~~~-------~~d~ 67 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQG-EEVRVLVRPTSDRRN----LE--GLDVEIVEGDLRDPASLRKAVA-------GCRA 67 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCC-CEEEEEEecCccccc----cc--cCCceEEEeeCCCHHHHHHHHh-------CCCE
Confidence 69999999999999999999999 599999997544321 11 1257889999999998887765 5899
Q ss_pred EEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcccc
Q 018819 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (350)
Q Consensus 168 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (350)
+||+|+.... ..++++..+++|+.++.++++++.... .++||++||...+.....+
T Consensus 68 vi~~a~~~~~-------~~~~~~~~~~~n~~~~~~l~~~~~~~~------~~~~v~~SS~~~~~~~~~~----------- 123 (328)
T TIGR03466 68 LFHVAADYRL-------WAPDPEEMYAANVEGTRNLLRAALEAG------VERVVYTSSVATLGVRGDG----------- 123 (328)
T ss_pred EEEeceeccc-------CCCCHHHHHHHHHHHHHHHHHHHHHhC------CCeEEEEechhhcCcCCCC-----------
Confidence 9999986321 123456788999999999999876431 2489999998654211000
Q ss_pred ccccccCCCCCCCcccCCCCC---CchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 248 RGFAGGLNGLNSSSMIDGGDF---DGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~---~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
.+..+..+. .....|+.+|.+.+.+++.++.++ |+++..++|+.+.++.
T Consensus 124 ------------~~~~e~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~ilR~~~~~G~~ 175 (328)
T TIGR03466 124 ------------TPADETTPSSLDDMIGHYKRSKFLAEQAALEMAAEK----GLPVVIVNPSTPIGPR 175 (328)
T ss_pred ------------CCcCccCCCCcccccChHHHHHHHHHHHHHHHHHhc----CCCEEEEeCCccCCCC
Confidence 001111111 124579999999999988877654 8999999999998775
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.3e-15 Score=131.72 Aligned_cols=200 Identities=17% Similarity=0.268 Sum_probs=121.0
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCH-HHHHHHHHHHHHcC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL-DSVRQFVDTFRRSG 162 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~-~~v~~~~~~~~~~~ 162 (350)
.++++++||||+|+||+.+++.|+++| ++|+++.|+.++..... . .+.++.++.+|++|. +++. +.+.
T Consensus 15 ~~~~~ilItGasG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~~---~-~~~~~~~~~~Dl~d~~~~l~---~~~~--- 83 (251)
T PLN00141 15 VKTKTVFVAGATGRTGKRIVEQLLAKG-FAVKAGVRDVDKAKTSL---P-QDPSLQIVRADVTEGSDKLV---EAIG--- 83 (251)
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhCC-CEEEEEecCHHHHHHhc---c-cCCceEEEEeeCCCCHHHHH---HHhh---
Confidence 356799999999999999999999999 58998999876543322 1 133688899999983 3332 2221
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
.++|+||+|+|......++ ..+++|+.++.++++++.. .+ .++||++||+..+... .+
T Consensus 84 ~~~d~vi~~~g~~~~~~~~---------~~~~~n~~~~~~ll~a~~~----~~--~~~iV~iSS~~v~g~~-~~------ 141 (251)
T PLN00141 84 DDSDAVICATGFRRSFDPF---------APWKVDNFGTVNLVEACRK----AG--VTRFILVSSILVNGAA-MG------ 141 (251)
T ss_pred cCCCEEEECCCCCcCCCCC---------CceeeehHHHHHHHHHHHH----cC--CCEEEEEccccccCCC-cc------
Confidence 2699999999874221111 1246888899999888642 22 3599999998643110 00
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHH-HHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEF-HRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~l-a~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.+....|...|.....+...+ +.++....|+++++|+||++.+++...... +.
T Consensus 142 -------------------------~~~~~~~~~~~~~~~~~~~k~~~e~~l~~~gi~~~iirpg~~~~~~~~~~~~-~~ 195 (251)
T PLN00141 142 -------------------------QILNPAYIFLNLFGLTLVAKLQAEKYIRKSGINYTIVRPGGLTNDPPTGNIV-ME 195 (251)
T ss_pred -------------------------cccCcchhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECCCccCCCCCceEE-EC
Confidence 011223544444322222222 222223458999999999998764321110 00
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhccc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
+. .....+.++++++|+.+++
T Consensus 196 ----~~--~~~~~~~i~~~dvA~~~~~ 216 (251)
T PLN00141 196 ----PE--DTLYEGSISRDQVAEVAVE 216 (251)
T ss_pred ----CC--CccccCcccHHHHHHHHHH
Confidence 00 0011235788888877654
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-14 Score=137.96 Aligned_cols=197 Identities=12% Similarity=0.087 Sum_probs=124.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhc-cCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG-MAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~-~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
++.+++|||||+|.||.++++.|+++|.+.|++++|+............ ....++.++.+|++|.+++.++++
T Consensus 12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~------ 85 (386)
T PLN02427 12 IKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIK------ 85 (386)
T ss_pred ccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhh------
Confidence 3456899999999999999999999842588888887554333221100 112368899999999998887765
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
.+|+|||+|+..... .. .++-...+..|+.++.++++++... . .+||++||...+ |...+...+
T Consensus 86 -~~d~ViHlAa~~~~~-~~----~~~~~~~~~~n~~gt~~ll~aa~~~----~---~r~v~~SS~~vY-g~~~~~~~~-- 149 (386)
T PLN02427 86 -MADLTINLAAICTPA-DY----NTRPLDTIYSNFIDALPVVKYCSEN----N---KRLIHFSTCEVY-GKTIGSFLP-- 149 (386)
T ss_pred -cCCEEEEcccccChh-hh----hhChHHHHHHHHHHHHHHHHHHHhc----C---CEEEEEeeeeee-CCCcCCCCC--
Confidence 479999999975321 11 1122344668999999999887432 1 389999997643 321111000
Q ss_pred CccccccccccCCCCCCCcccCC------CC-CCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDG------GD-FDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
...-+.. . .......+. .+ ......|+.||.+.+.+++.+++. .|+++..+.|+.|.+|.
T Consensus 150 e~~p~~~---~---~~~~~~~e~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~----~g~~~~ilR~~~vyGp~ 216 (386)
T PLN02427 150 KDHPLRQ---D---PAFYVLKEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAE----NGLEFTIVRPFNWIGPR 216 (386)
T ss_pred ccccccc---c---cccccccccccccccCCCCccccchHHHHHHHHHHHHHHHhh----cCCceEEecccceeCCC
Confidence 0000000 0 000000000 00 012357999999998888766544 38999999999999885
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-14 Score=127.84 Aligned_cols=174 Identities=20% Similarity=0.250 Sum_probs=132.5
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcEE
Q 018819 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVL 168 (350)
Q Consensus 89 ~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~l 168 (350)
||||||+|-||.+++++|.++| +.|+.+.|+........... ++.++.+|+.|.++++++++.. .+|.+
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g-~~v~~~~~~~~~~~~~~~~~-----~~~~~~~dl~~~~~~~~~~~~~-----~~d~v 69 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKG-HEVIVLSRSSNSESFEEKKL-----NVEFVIGDLTDKEQLEKLLEKA-----NIDVV 69 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-TEEEEEESCSTGGHHHHHHT-----TEEEEESETTSHHHHHHHHHHH-----TESEE
T ss_pred EEEEccCCHHHHHHHHHHHHcC-Cccccccccccccccccccc-----eEEEEEeecccccccccccccc-----CceEE
Confidence 6999999999999999999999 57777777654433222222 6889999999999999999976 79999
Q ss_pred EEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccccc
Q 018819 169 VCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLR 248 (350)
Q Consensus 169 v~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~ 248 (350)
||+|+.... ..+.+.....++.|+.++.++++++...-. .++|++||...+ +..
T Consensus 70 i~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~------~~~i~~sS~~~y-~~~-------------- 123 (236)
T PF01370_consen 70 IHLAAFSSN-----PESFEDPEEIIEANVQGTRNLLEAAREAGV------KRFIFLSSASVY-GDP-------------- 123 (236)
T ss_dssp EEEBSSSSH-----HHHHHSHHHHHHHHHHHHHHHHHHHHHHTT------SEEEEEEEGGGG-TSS--------------
T ss_pred EEeeccccc-----cccccccccccccccccccccccccccccc------cccccccccccc-ccc--------------
Confidence 999987421 123356678889999999999998865432 389999995433 210
Q ss_pred cccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 249 GFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
...++.+..+..+...|+.+|...+.+.+.+..+. ++++..+.|+.+..|.
T Consensus 124 ---------~~~~~~e~~~~~~~~~Y~~~K~~~e~~~~~~~~~~----~~~~~~~R~~~vyG~~ 174 (236)
T PF01370_consen 124 ---------DGEPIDEDSPINPLSPYGASKRAAEELLRDYAKKY----GLRVTILRPPNVYGPG 174 (236)
T ss_dssp ---------SSSSBETTSGCCHSSHHHHHHHHHHHHHHHHHHHH----TSEEEEEEESEEESTT
T ss_pred ---------ccccccccccccccccccccccccccccccccccc----cccccccccccccccc
Confidence 11223333344566779999999999998888775 8999999999999887
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.3e-15 Score=133.98 Aligned_cols=182 Identities=19% Similarity=0.128 Sum_probs=124.9
Q ss_pred EEEcCCCchHHHHHHHHHHcCC-cEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcEE
Q 018819 90 IITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVL 168 (350)
Q Consensus 90 lItGgs~gIG~~ia~~la~~Ga-~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~l 168 (350)
|||||+|.||.+++++|.++|. ..|.+.++....... ..+... ....++.+|++|.+++.++++ +.|+|
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~--~~~~~~-~~~~~~~~Di~d~~~l~~a~~-------g~d~V 70 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFL--KDLQKS-GVKEYIQGDITDPESLEEALE-------GVDVV 70 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccc--hhhhcc-cceeEEEeccccHHHHHHHhc-------CCceE
Confidence 6999999999999999999993 367777775433211 111111 123389999999999999887 68999
Q ss_pred EEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccccc
Q 018819 169 VCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLR 248 (350)
Q Consensus 169 v~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~ 248 (350)
||+|+...... ....+..+++|+.|+-++++++...-. .++|++||.+.......+.
T Consensus 71 ~H~Aa~~~~~~------~~~~~~~~~vNV~GT~nvl~aa~~~~V------krlVytSS~~vv~~~~~~~----------- 127 (280)
T PF01073_consen 71 FHTAAPVPPWG------DYPPEEYYKVNVDGTRNVLEAARKAGV------KRLVYTSSISVVFDNYKGD----------- 127 (280)
T ss_pred EEeCccccccC------cccHHHHHHHHHHHHHHHHHHHHHcCC------CEEEEEcCcceeEeccCCC-----------
Confidence 99999753311 234577899999999999999875422 3999999998764311010
Q ss_pred cccccCCCCCCCcccCCCC--CCchhchhhhHHHHHHHHHHHHH-hhcCCCCcEEEEeeCCcccCCcc
Q 018819 249 GFAGGLNGLNSSSMIDGGD--FDGAKAYKDSKVCNMLTMQEFHR-RFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~--~~~~~~Y~asKaa~~~~~~~la~-e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.+ ....+..+ ......|+.||+..+.++..... ++.....++.++|+|..|..|+.
T Consensus 128 ~~---------~~~dE~~~~~~~~~~~Y~~SK~~AE~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d 186 (280)
T PF01073_consen 128 PI---------INGDEDTPYPSSPLDPYAESKALAEKAVLEANGSELKNGGRLRTCALRPAGIYGPGD 186 (280)
T ss_pred Cc---------ccCCcCCcccccccCchHHHHHHHHHHHHhhcccccccccceeEEEEeccEEeCccc
Confidence 00 00011111 12456899999998888876554 22122359999999999999864
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.59 E-value=7e-14 Score=142.38 Aligned_cols=188 Identities=15% Similarity=0.121 Sum_probs=127.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcC-CcEEEEEecCh--hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETG-KWHIIMACRDF--LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~G-a~~Vi~~~r~~--~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
.++++||||||+|.||+++++.|.++| .++|+.++|.. ......... ....++.++.+|++|.+.+..++..
T Consensus 4 ~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~--~~~~~v~~~~~Dl~d~~~~~~~~~~--- 78 (668)
T PLN02260 4 YEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPS--KSSPNFKFVKGDIASADLVNYLLIT--- 78 (668)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhc--ccCCCeEEEECCCCChHHHHHHHhh---
Confidence 356799999999999999999999983 15788887742 122221111 1124688999999998887765432
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
..+|+|||+|+..... .+.++....+++|+.++.++++++...- . ..++|++||...+ +..... +
T Consensus 79 --~~~D~ViHlAa~~~~~-----~~~~~~~~~~~~Nv~gt~~ll~a~~~~~---~--vkr~I~~SS~~vy-g~~~~~-~- 143 (668)
T PLN02260 79 --EGIDTIMHFAAQTHVD-----NSFGNSFEFTKNNIYGTHVLLEACKVTG---Q--IRRFIHVSTDEVY-GETDED-A- 143 (668)
T ss_pred --cCCCEEEECCCccCch-----hhhhCHHHHHHHHHHHHHHHHHHHHhcC---C--CcEEEEEcchHHh-CCCccc-c-
Confidence 2699999999975331 1223345678999999999998875421 0 1389999997543 210000 0
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.....+..+..+...|+.+|.+.+.+++.+..++ ++++.++.|+.|..|..
T Consensus 144 ------------------~~~~~E~~~~~p~~~Y~~sK~~aE~~v~~~~~~~----~l~~vilR~~~VyGp~~ 194 (668)
T PLN02260 144 ------------------DVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSY----GLPVITTRGNNVYGPNQ 194 (668)
T ss_pred ------------------ccCccccCCCCCCCCcHHHHHHHHHHHHHHHHHc----CCCEEEECcccccCcCC
Confidence 0000111122345679999999999998877665 89999999999998764
|
|
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=7e-14 Score=129.12 Aligned_cols=172 Identities=12% Similarity=0.097 Sum_probs=114.6
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH--cCCCCc
Q 018819 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR--SGRPLD 166 (350)
Q Consensus 89 ~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~--~~g~id 166 (350)
+|||||+|.||++++++|+++|. .++++.|+....... ..+..+|++|..+.+.+++.+.+ .++++|
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~-~~v~~~~~~~~~~~~----------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~d 70 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKF----------VNLVDLDIADYMDKEDFLAQIMAGDDFGDIE 70 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCC-ceEEEecCCCcchHH----------HhhhhhhhhhhhhHHHHHHHHhcccccCCcc
Confidence 79999999999999999999994 555544442221111 01234677777666666665542 345799
Q ss_pred EEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccc
Q 018819 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (350)
Q Consensus 167 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (350)
+|||+|+.... . ..+. +..++.|+.++.++++++... + .++|++||...+ +...+
T Consensus 71 ~Vih~A~~~~~-~---~~~~---~~~~~~n~~~t~~ll~~~~~~----~---~~~i~~SS~~vy-g~~~~---------- 125 (308)
T PRK11150 71 AIFHEGACSST-T---EWDG---KYMMDNNYQYSKELLHYCLER----E---IPFLYASSAATY-GGRTD---------- 125 (308)
T ss_pred EEEECceecCC-c---CCCh---HHHHHHHHHHHHHHHHHHHHc----C---CcEEEEcchHHh-CcCCC----------
Confidence 99999986432 1 1122 346899999999999987532 2 379999998644 21000
Q ss_pred cccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
....+..+..+...|+.||.+.+.+++.++.+. ++++.++.|+.|..|..
T Consensus 126 -------------~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~~~~~~lR~~~vyG~~~ 175 (308)
T PRK11150 126 -------------DFIEEREYEKPLNVYGYSKFLFDEYVRQILPEA----NSQICGFRYFNVYGPRE 175 (308)
T ss_pred -------------CCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHc----CCCEEEEeeeeecCCCC
Confidence 001111223345689999999888888776553 89999999999988753
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-13 Score=129.20 Aligned_cols=180 Identities=16% Similarity=0.051 Sum_probs=122.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+++++|||||+|.||.++++.|.++| +.|+.++|...... ........++.+|++|.+.+..++. .
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G-~~V~~v~r~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------~ 85 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEG-HYIIASDWKKNEHM------SEDMFCHEFHLVDLRVMENCLKVTK-------G 85 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCC-CEEEEEEecccccc------ccccccceEEECCCCCHHHHHHHHh-------C
Confidence 67899999999999999999999999 68999988532110 0001124678899999887766653 5
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
+|+|||+|+........ ..+....+..|+.++.++++++... + -.+||++||...+ +..... +
T Consensus 86 ~D~Vih~Aa~~~~~~~~----~~~~~~~~~~N~~~t~nll~aa~~~----~--vk~~V~~SS~~vY-g~~~~~-~----- 148 (370)
T PLN02695 86 VDHVFNLAADMGGMGFI----QSNHSVIMYNNTMISFNMLEAARIN----G--VKRFFYASSACIY-PEFKQL-E----- 148 (370)
T ss_pred CCEEEEcccccCCcccc----ccCchhhHHHHHHHHHHHHHHHHHh----C--CCEEEEeCchhhc-CCcccc-C-----
Confidence 89999999864321111 1122345678999999999987532 1 1389999997543 210000 0
Q ss_pred cccccccccCCCCCCCcccCCC--CCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 245 GDLRGFAGGLNGLNSSSMIDGG--DFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
...++.+.. +..+...|+.+|.+.+.+++.++.++ |+++..+.|+.|..|.
T Consensus 149 -------------~~~~~~E~~~~p~~p~s~Yg~sK~~~E~~~~~~~~~~----g~~~~ilR~~~vyGp~ 201 (370)
T PLN02695 149 -------------TNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDF----GIECRIGRFHNIYGPF 201 (370)
T ss_pred -------------cCCCcCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHh----CCCEEEEEECCccCCC
Confidence 000111111 23456789999999999888876654 8999999999999885
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-13 Score=140.43 Aligned_cols=181 Identities=14% Similarity=0.103 Sum_probs=123.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHc-CCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHH-HHHHHHHHHHcC
Q 018819 85 RKGSVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDS-VRQFVDTFRRSG 162 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~-Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~-v~~~~~~~~~~~ 162 (350)
+++++|||||+|.||.+++++|.++ | +.|+.++|........ .. ..++.++.+|++|.++ ++++++
T Consensus 314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g-~~V~~l~r~~~~~~~~---~~--~~~~~~~~gDl~d~~~~l~~~l~------ 381 (660)
T PRK08125 314 RRTRVLILGVNGFIGNHLTERLLRDDN-YEVYGLDIGSDAISRF---LG--HPRFHFVEGDISIHSEWIEYHIK------ 381 (660)
T ss_pred cCCEEEEECCCchHHHHHHHHHHhCCC-cEEEEEeCCchhhhhh---cC--CCceEEEeccccCcHHHHHHHhc------
Confidence 5778999999999999999999986 6 6999999875432221 11 1357888999998655 343332
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
.+|+|||+|+...... ..++.+..+++|+.++.++.+++... + .++|++||...+ |...+ .+
T Consensus 382 -~~D~ViHlAa~~~~~~-----~~~~~~~~~~~Nv~~t~~ll~a~~~~----~---~~~V~~SS~~vy-g~~~~-~~--- 443 (660)
T PRK08125 382 -KCDVVLPLVAIATPIE-----YTRNPLRVFELDFEENLKIIRYCVKY----N---KRIIFPSTSEVY-GMCTD-KY--- 443 (660)
T ss_pred -CCCEEEECccccCchh-----hccCHHHHHHhhHHHHHHHHHHHHhc----C---CeEEEEcchhhc-CCCCC-CC---
Confidence 5899999999754311 12233557889999999999998653 1 289999997543 21000 00
Q ss_pred CccccccccccCCCCCCCcccCCCCC-CchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDF-DGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
.. +.. +.....+. .+...|+.||.+.+.+++.+++++ |+++..+.|+.+..|.
T Consensus 444 -~~----------E~~--~~~~~~p~~~p~s~Yg~sK~~~E~~~~~~~~~~----g~~~~ilR~~~vyGp~ 497 (660)
T PRK08125 444 -FD----------EDT--SNLIVGPINKQRWIYSVSKQLLDRVIWAYGEKE----GLRFTLFRPFNWMGPR 497 (660)
T ss_pred -cC----------ccc--cccccCCCCCCccchHHHHHHHHHHHHHHHHhc----CCceEEEEEceeeCCC
Confidence 00 000 00000111 234579999999999998877664 8999999999999875
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-13 Score=128.35 Aligned_cols=180 Identities=15% Similarity=0.125 Sum_probs=120.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHc-CCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCC-CHHHHHHHHHHHHHcCCC
Q 018819 87 GSVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA-SLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~-Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs-~~~~v~~~~~~~~~~~g~ 164 (350)
+++|||||+|.||..++++|+++ | ++|+.++|+....... .. ...+.++.+|++ +.+.+.++++ +
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~-~~V~~~~r~~~~~~~~---~~--~~~~~~~~~Dl~~~~~~~~~~~~-------~ 68 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTD-WEVYGMDMQTDRLGDL---VN--HPRMHFFEGDITINKEWIEYHVK-------K 68 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCC-CeEEEEeCcHHHHHHh---cc--CCCeEEEeCCCCCCHHHHHHHHc-------C
Confidence 37999999999999999999986 5 6899998865432221 11 235888999998 6666555443 5
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
+|+|||+|+...+.. ..++.+..+++|+.++.++++++... + .++|++||...+ +...+. + ..
T Consensus 69 ~d~ViH~aa~~~~~~-----~~~~p~~~~~~n~~~~~~ll~aa~~~----~---~~~v~~SS~~vy-g~~~~~-~---~~ 131 (347)
T PRK11908 69 CDVILPLVAIATPAT-----YVKQPLRVFELDFEANLPIVRSAVKY----G---KHLVFPSTSEVY-GMCPDE-E---FD 131 (347)
T ss_pred CCEEEECcccCChHH-----hhcCcHHHHHHHHHHHHHHHHHHHhc----C---CeEEEEecceee-ccCCCc-C---cC
Confidence 899999999743311 12334567899999999999887532 1 389999997543 211100 0 00
Q ss_pred cccccccccCCCCCCCcccCCCC-CCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 245 GDLRGFAGGLNGLNSSSMIDGGD-FDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
++ ..+.. ..+ ..+...|+.||.+.+.+.+.++.+. |+++..+.|+.+..|+.
T Consensus 132 ee------------~~~~~-~~~~~~p~~~Y~~sK~~~e~~~~~~~~~~----~~~~~ilR~~~v~Gp~~ 184 (347)
T PRK11908 132 PE------------ASPLV-YGPINKPRWIYACSKQLMDRVIWAYGMEE----GLNFTLFRPFNWIGPGL 184 (347)
T ss_pred cc------------ccccc-cCcCCCccchHHHHHHHHHHHHHHHHHHc----CCCeEEEeeeeeeCCCc
Confidence 00 00000 001 1234579999999988888777654 88999999999888753
|
|
| >KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-13 Score=122.11 Aligned_cols=165 Identities=15% Similarity=0.168 Sum_probs=124.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC----hhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRD----FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~----~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
++++|||||+|-||.+++.+|.++| +.|++++.- .+.+....+ +...+..+.++..|++|.+.++++++..
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~g-y~v~~vDNl~n~~~~sl~r~~~-l~~~~~~v~f~~~Dl~D~~~L~kvF~~~--- 76 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRG-YGVVIVDNLNNSYLESLKRVRQ-LLGEGKSVFFVEGDLNDAEALEKLFSEV--- 76 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCC-CcEEEEecccccchhHHHHHHH-hcCCCCceEEEEeccCCHHHHHHHHhhc---
Confidence 4689999999999999999999999 577776542 233333333 3333578999999999999999999986
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++|.|+|-|+..... .+.+......+.|+.|+++++..+..+-. ..+|+.||..-+ |.
T Consensus 77 --~fd~V~Hfa~~~~vg-----eS~~~p~~Y~~nNi~gtlnlLe~~~~~~~------~~~V~sssatvY-G~-------- 134 (343)
T KOG1371|consen 77 --KFDAVMHFAALAAVG-----ESMENPLSYYHNNIAGTLNLLEVMKAHNV------KALVFSSSATVY-GL-------- 134 (343)
T ss_pred --CCceEEeehhhhccc-----hhhhCchhheehhhhhHHHHHHHHHHcCC------ceEEEecceeee-cC--------
Confidence 699999999986542 34555678899999999999988665432 378888876544 21
Q ss_pred CCccccccccccCCCCCCCcccCCCCCC-chhchhhhHHHHHHHHHHHHHhh
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFD-GAKAYKDSKVCNMLTMQEFHRRF 292 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~asKaa~~~~~~~la~e~ 292 (350)
...-++.+..+.. +...|+.+|.+++...+++...+
T Consensus 135 ---------------p~~ip~te~~~t~~p~~pyg~tK~~iE~i~~d~~~~~ 171 (343)
T KOG1371|consen 135 ---------------PTKVPITEEDPTDQPTNPYGKTKKAIEEIIHDYNKAY 171 (343)
T ss_pred ---------------cceeeccCcCCCCCCCCcchhhhHHHHHHHHhhhccc
Confidence 1223455555555 77899999999999998888765
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.9e-13 Score=126.63 Aligned_cols=179 Identities=21% Similarity=0.165 Sum_probs=116.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC-cEEEEEecChhHH---HHHHHHhccC-------C-CceEEEEccCCCHH------
Q 018819 88 SVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKA---ERAAKSAGMA-------K-ENYTIMHLDLASLD------ 149 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga-~~Vi~~~r~~~~~---~~~~~~l~~~-------~-~~v~~~~~Dvs~~~------ 149 (350)
+++||||+|+||.++++.|+++|. .+|+++.|+.... +.+.+.+... . .++.++.+|++++.
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~ 80 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA 80 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence 489999999999999999999982 2788888875421 1222222110 1 46889999998652
Q ss_pred HHHHHHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCC
Q 018819 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229 (350)
Q Consensus 150 ~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~ 229 (350)
....+. ..+|++||||+..... ..++..+++|+.++.++++.+... + ..+||++||...
T Consensus 81 ~~~~~~-------~~~d~vih~a~~~~~~--------~~~~~~~~~nv~g~~~ll~~a~~~----~--~~~~v~iSS~~v 139 (367)
T TIGR01746 81 EWERLA-------ENVDTIVHNGALVNWV--------YPYSELRAANVLGTREVLRLAASG----R--AKPLHYVSTISV 139 (367)
T ss_pred HHHHHH-------hhCCEEEeCCcEeccC--------CcHHHHhhhhhHHHHHHHHHHhhC----C--CceEEEEccccc
Confidence 332222 3699999999975321 124567789999999999887542 1 136999999876
Q ss_pred CCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCccc
Q 018819 230 NTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA 309 (350)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~ 309 (350)
..... . .+. . .+... ..........|+.||.+.+.+++.... .|++++.+.||.+.
T Consensus 140 ~~~~~-~--~~~-~-------------~~~~~--~~~~~~~~~~Y~~sK~~~E~~~~~~~~-----~g~~~~i~Rpg~v~ 195 (367)
T TIGR01746 140 LAAID-L--STV-T-------------EDDAI--VTPPPGLAGGYAQSKWVAELLVREASD-----RGLPVTIVRPGRIL 195 (367)
T ss_pred cCCcC-C--CCc-c-------------ccccc--cccccccCCChHHHHHHHHHHHHHHHh-----cCCCEEEECCCcee
Confidence 53210 0 000 0 00000 000112345799999998888765432 28999999999998
Q ss_pred CC
Q 018819 310 TT 311 (350)
Q Consensus 310 t~ 311 (350)
++
T Consensus 196 G~ 197 (367)
T TIGR01746 196 GN 197 (367)
T ss_pred ec
Confidence 75
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-13 Score=125.76 Aligned_cols=157 Identities=14% Similarity=0.083 Sum_probs=110.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
++|||||+|.||.+++++|.++| +|+.++|... .+..|++|.+.+.++++.. ++|+
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~~~~~-----------------~~~~Dl~d~~~~~~~~~~~-----~~D~ 57 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG--NLIALDVHST-----------------DYCGDFSNPEGVAETVRKI-----RPDV 57 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC--CEEEeccccc-----------------cccCCCCCHHHHHHHHHhc-----CCCE
Confidence 69999999999999999999999 4777776421 2357999999998887753 6899
Q ss_pred EEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcccc
Q 018819 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (350)
Q Consensus 168 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (350)
|||+|+..... ...++.+..+.+|+.++.++.+++... +.++|++||...+-+. .
T Consensus 58 Vih~Aa~~~~~-----~~~~~~~~~~~~N~~~~~~l~~aa~~~-------g~~~v~~Ss~~Vy~~~-~------------ 112 (299)
T PRK09987 58 IVNAAAHTAVD-----KAESEPEFAQLLNATSVEAIAKAANEV-------GAWVVHYSTDYVFPGT-G------------ 112 (299)
T ss_pred EEECCccCCcc-----hhhcCHHHHHHHHHHHHHHHHHHHHHc-------CCeEEEEccceEECCC-C------------
Confidence 99999975431 122334566789999999999987643 1389999886643211 0
Q ss_pred ccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
..++.|..+..+...|+.||.+.+.+++.+.. +...+.|+++..|.
T Consensus 113 -----------~~p~~E~~~~~P~~~Yg~sK~~~E~~~~~~~~--------~~~ilR~~~vyGp~ 158 (299)
T PRK09987 113 -----------DIPWQETDATAPLNVYGETKLAGEKALQEHCA--------KHLIFRTSWVYAGK 158 (299)
T ss_pred -----------CCCcCCCCCCCCCCHHHHHHHHHHHHHHHhCC--------CEEEEecceecCCC
Confidence 01122223334556899999998887754322 34777888887763
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.2e-13 Score=123.29 Aligned_cols=153 Identities=18% Similarity=0.196 Sum_probs=111.9
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcEE
Q 018819 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVL 168 (350)
Q Consensus 89 ~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~l 168 (350)
+|||||+|.||.+++++|.++| +.|+++.|. .+|+.+.+++.++++.. .+|++
T Consensus 2 ilv~G~tG~iG~~l~~~l~~~g-~~v~~~~r~---------------------~~d~~~~~~~~~~~~~~-----~~d~v 54 (287)
T TIGR01214 2 ILITGANGQLGRELVQQLSPEG-RVVVALTSS---------------------QLDLTDPEALERLLRAI-----RPDAV 54 (287)
T ss_pred EEEEcCCCHHHHHHHHHHHhcC-CEEEEeCCc---------------------ccCCCCHHHHHHHHHhC-----CCCEE
Confidence 7999999999999999999999 589888874 47999999998887753 68999
Q ss_pred EEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccccc
Q 018819 169 VCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLR 248 (350)
Q Consensus 169 v~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~ 248 (350)
||+|+.... . ......+..+++|+.++.++.+++... + .++|++||...+.+.
T Consensus 55 i~~a~~~~~-~----~~~~~~~~~~~~n~~~~~~l~~~~~~~----~---~~~v~~Ss~~vy~~~--------------- 107 (287)
T TIGR01214 55 VNTAAYTDV-D----GAESDPEKAFAVNALAPQNLARAAARH----G---ARLVHISTDYVFDGE--------------- 107 (287)
T ss_pred EECCccccc-c----ccccCHHHHHHHHHHHHHHHHHHHHHc----C---CeEEEEeeeeeecCC---------------
Confidence 999997532 1 122345677899999999999986532 1 389999997543110
Q ss_pred cccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 249 GFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
...+..+..+..+...|+.+|...+.+++.+ +.++..+.|+.|..+.
T Consensus 108 ---------~~~~~~E~~~~~~~~~Y~~~K~~~E~~~~~~--------~~~~~ilR~~~v~G~~ 154 (287)
T TIGR01214 108 ---------GKRPYREDDATNPLNVYGQSKLAGEQAIRAA--------GPNALIVRTSWLYGGG 154 (287)
T ss_pred ---------CCCCCCCCCCCCCcchhhHHHHHHHHHHHHh--------CCCeEEEEeeecccCC
Confidence 0011112222334568999999977666533 4578999999998875
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.6e-13 Score=128.25 Aligned_cols=164 Identities=14% Similarity=0.188 Sum_probs=115.4
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHH--HHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAER--AAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~--~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
..++++++||||+|+||+++++.|+++| +.|+++.|+...... ...+......++.++.+|++|++++.++++..
T Consensus 57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G-~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 133 (390)
T PLN02657 57 EPKDVTVLVVGATGYIGKFVVRELVRRG-YNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSE-- 133 (390)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHh--
Confidence 3467899999999999999999999999 589999998644321 11111111236789999999999999888754
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
.+++|+||||++.... . . ...+++|+.++.++++++.. .+ .++||++||....
T Consensus 134 -~~~~D~Vi~~aa~~~~-~-----~----~~~~~vn~~~~~~ll~aa~~----~g--v~r~V~iSS~~v~---------- 186 (390)
T PLN02657 134 -GDPVDVVVSCLASRTG-G-----V----KDSWKIDYQATKNSLDAGRE----VG--AKHFVLLSAICVQ---------- 186 (390)
T ss_pred -CCCCcEEEECCccCCC-C-----C----ccchhhHHHHHHHHHHHHHH----cC--CCEEEEEeecccc----------
Confidence 1269999999985321 1 1 12345788888888887643 22 2489999997543
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccC
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIAT 310 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t 310 (350)
.+...|..+|...+...+. ...+++...|+|+.+..
T Consensus 187 ----------------------------~p~~~~~~sK~~~E~~l~~------~~~gl~~tIlRp~~~~~ 222 (390)
T PLN02657 187 ----------------------------KPLLEFQRAKLKFEAELQA------LDSDFTYSIVRPTAFFK 222 (390)
T ss_pred ----------------------------CcchHHHHHHHHHHHHHHh------ccCCCCEEEEccHHHhc
Confidence 1234577888877665432 13489999999988754
|
|
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=99.52 E-value=4e-13 Score=124.16 Aligned_cols=174 Identities=13% Similarity=-0.016 Sum_probs=116.8
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcEE
Q 018819 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVL 168 (350)
Q Consensus 89 ~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~l 168 (350)
+|||||+|.||.++++.|.++|...|++++|..... .. ..+. ...+..|+++.+.++.+.+. .+.++|+|
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~-~~-~~~~-----~~~~~~d~~~~~~~~~~~~~---~~~~~D~v 70 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGH-KF-LNLA-----DLVIADYIDKEDFLDRLEKG---AFGKIEAI 70 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCch-hh-hhhh-----heeeeccCcchhHHHHHHhh---ccCCCCEE
Confidence 589999999999999999999954687777653221 11 1111 13456788887776665543 34579999
Q ss_pred EEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccccc
Q 018819 169 VCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLR 248 (350)
Q Consensus 169 v~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~ 248 (350)
||+|+.... +.++++..+++|+.++.++++++... +.++|++||...+ +....
T Consensus 71 vh~A~~~~~-------~~~~~~~~~~~n~~~~~~ll~~~~~~-------~~~~v~~SS~~vy-~~~~~------------ 123 (314)
T TIGR02197 71 FHQGACSDT-------TETDGEYMMENNYQYSKRLLDWCAEK-------GIPFIYASSAATY-GDGEA------------ 123 (314)
T ss_pred EECccccCc-------cccchHHHHHHHHHHHHHHHHHHHHh-------CCcEEEEccHHhc-CCCCC------------
Confidence 999996421 23345778899999999999987542 1379999997543 21000
Q ss_pred cccccCCCCCCCcccCCC-CCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 249 GFAGGLNGLNSSSMIDGG-DFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~-~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
+..+.. +..+...|+.||.+.+.+++....+. ..++++..+.|+.|..|..
T Consensus 124 ------------~~~e~~~~~~p~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~~lR~~~vyG~~~ 175 (314)
T TIGR02197 124 ------------GFREGRELERPLNVYGYSKFLFDQYVRRRVLPE--ALSAQVVGLRYFNVYGPRE 175 (314)
T ss_pred ------------CcccccCcCCCCCHHHHHHHHHHHHHHHHhHhh--ccCCceEEEEEeeccCCCC
Confidence 000111 11245689999999998887644332 2367899999999988753
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.2e-13 Score=123.83 Aligned_cols=177 Identities=17% Similarity=0.135 Sum_probs=123.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
.+|||||+|.||.+++++|.++| +.|+.++|......... ..+.++.+|++|.+.+..+.+.. . |.
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~~-----~-d~ 67 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAG-HDVRGLDRLRDGLDPLL-------SGVEFVVLDLTDRDLVDELAKGV-----P-DA 67 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCC-CeEEEEeCCCccccccc-------cccceeeecccchHHHHHHHhcC-----C-CE
Confidence 38999999999999999999999 69999998754433221 35778899999986555554421 1 99
Q ss_pred EEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcccc
Q 018819 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (350)
Q Consensus 168 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (350)
+||+|+....... ..+ +....+.+|+.++.++.+++... . ..+||+.||.+...+...+
T Consensus 68 vih~aa~~~~~~~--~~~--~~~~~~~~nv~gt~~ll~aa~~~--~----~~~~v~~ss~~~~~~~~~~----------- 126 (314)
T COG0451 68 VIHLAAQSSVPDS--NAS--DPAEFLDVNVDGTLNLLEAARAA--G----VKRFVFASSVSVVYGDPPP----------- 126 (314)
T ss_pred EEEccccCchhhh--hhh--CHHHHHHHHHHHHHHHHHHHHHc--C----CCeEEEeCCCceECCCCCC-----------
Confidence 9999998643111 111 45568999999999999998761 1 2388996555544321000
Q ss_pred ccccccCCCCCCCcccCC-CCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccc
Q 018819 248 RGFAGGLNGLNSSSMIDG-GDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 315 (350)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~-~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~ 315 (350)
....+. .+..+...|+.||.+.+.+++....+ .|+.+..+.|+.|..|+...
T Consensus 127 ------------~~~~E~~~~~~p~~~Yg~sK~~~E~~~~~~~~~----~~~~~~ilR~~~vyGp~~~~ 179 (314)
T COG0451 127 ------------LPIDEDLGPPRPLNPYGVSKLAAEQLLRAYARL----YGLPVVILRPFNVYGPGDKP 179 (314)
T ss_pred ------------CCcccccCCCCCCCHHHHHHHHHHHHHHHHHHH----hCCCeEEEeeeeeeCCCCCC
Confidence 011111 11222238999999999998888773 38999999999998887544
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-12 Score=125.68 Aligned_cols=179 Identities=13% Similarity=0.104 Sum_probs=119.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhH-HHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK-AERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~-~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
+++++|||||+|.||.+++++|.++| +.|++++|.... .+.....+. ..++.++..|+.+.. + .
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G-~~V~~ld~~~~~~~~~~~~~~~--~~~~~~i~~D~~~~~-----l-------~ 182 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARG-DSVIVVDNFFTGRKENVMHHFS--NPNFELIRHDVVEPI-----L-------L 182 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCc-CEEEEEeCCCccchhhhhhhcc--CCceEEEECCccChh-----h-------c
Confidence 56899999999999999999999999 588888764221 111111121 235778889987652 1 1
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCC
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (350)
.+|+|||+|+..... . ..++....+++|+.++.++.+++... + .++|++||...+... .. .+.
T Consensus 183 ~~D~ViHlAa~~~~~-~----~~~~p~~~~~~Nv~gt~nLleaa~~~----g---~r~V~~SS~~VYg~~-~~-~p~--- 245 (442)
T PLN02206 183 EVDQIYHLACPASPV-H----YKFNPVKTIKTNVVGTLNMLGLAKRV----G---ARFLLTSTSEVYGDP-LQ-HPQ--- 245 (442)
T ss_pred CCCEEEEeeeecchh-h----hhcCHHHHHHHHHHHHHHHHHHHHHh----C---CEEEEECChHHhCCC-CC-CCC---
Confidence 589999999875321 1 11234578899999999999987543 1 389999997644211 00 000
Q ss_pred ccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
....+.+..+......|+.+|.+.+.+++.+.+++ ++++..+.|+.+..|..
T Consensus 246 --------------~E~~~~~~~P~~~~s~Y~~SK~~aE~~~~~y~~~~----g~~~~ilR~~~vyGp~~ 297 (442)
T PLN02206 246 --------------VETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA----NVEVRIARIFNTYGPRM 297 (442)
T ss_pred --------------CccccccCCCCCccchHHHHHHHHHHHHHHHHHHh----CCCeEEEEeccccCCCC
Confidence 00000011123345789999999988888776554 89999999999988753
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.3e-13 Score=122.00 Aligned_cols=159 Identities=16% Similarity=0.093 Sum_probs=110.8
Q ss_pred EEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcEEE
Q 018819 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLV 169 (350)
Q Consensus 90 lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~lv 169 (350)
|||||+|.||..+++.|.++|. .|+++.+. ..+|++|.+++.++++.. ++|+||
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~-~v~~~~~~--------------------~~~Dl~~~~~l~~~~~~~-----~~d~Vi 54 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGF-TNLVLRTH--------------------KELDLTRQADVEAFFAKE-----KPTYVI 54 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCC-cEEEeecc--------------------ccCCCCCHHHHHHHHhcc-----CCCEEE
Confidence 6999999999999999999994 55555322 148999999988887753 589999
Q ss_pred EccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcccccc
Q 018819 170 CNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRG 249 (350)
Q Consensus 170 ~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~ 249 (350)
|+|+.... .. ...++....+++|+.++.++++++...- ..++|++||...+ +...+
T Consensus 55 h~A~~~~~--~~--~~~~~~~~~~~~n~~~~~~ll~~~~~~~------~~~~i~~SS~~vy-g~~~~------------- 110 (306)
T PLN02725 55 LAAAKVGG--IH--ANMTYPADFIRENLQIQTNVIDAAYRHG------VKKLLFLGSSCIY-PKFAP------------- 110 (306)
T ss_pred Eeeeeecc--cc--hhhhCcHHHHHHHhHHHHHHHHHHHHcC------CCeEEEeCceeec-CCCCC-------------
Confidence 99997421 00 0112234568899999999999876431 2389999997533 21000
Q ss_pred ccccCCCCCCCcccCC----CCC-CchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 250 FAGGLNGLNSSSMIDG----GDF-DGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 250 ~~~~~~~~~~~~~~~~----~~~-~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
.+..|. .+. +....|+.||.+.+.+.+.+..++ ++++..+.|+.|..+.
T Consensus 111 ----------~~~~E~~~~~~~~~p~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~~R~~~vyG~~ 164 (306)
T PLN02725 111 ----------QPIPETALLTGPPEPTNEWYAIAKIAGIKMCQAYRIQY----GWDAISGMPTNLYGPH 164 (306)
T ss_pred ----------CCCCHHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHh----CCCEEEEEecceeCCC
Confidence 001111 011 222359999999988887776654 8999999999998875
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.5e-12 Score=123.94 Aligned_cols=180 Identities=12% Similarity=0.106 Sum_probs=119.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+.+++|||||+|.||.+++++|.++| +.|++++|...........+. ...++.++..|+.+.. + .+
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G-~~V~~ldr~~~~~~~~~~~~~-~~~~~~~~~~Di~~~~-----~-------~~ 184 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRG-DEVIVIDNFFTGRKENLVHLF-GNPRFELIRHDVVEPI-----L-------LE 184 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeCCCCccHhHhhhhc-cCCceEEEECcccccc-----c-------cC
Confidence 45689999999999999999999999 589988875321111111111 1235778888987642 1 25
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
+|+|||+|+..... .. ..+....+++|+.|+.++++++... + .++|++||...+ +...+. +
T Consensus 185 ~D~ViHlAa~~~~~-~~----~~~p~~~~~~Nv~gT~nLleaa~~~----g---~r~V~~SS~~VY-g~~~~~-p----- 245 (436)
T PLN02166 185 VDQIYHLACPASPV-HY----KYNPVKTIKTNVMGTLNMLGLAKRV----G---ARFLLTSTSEVY-GDPLEH-P----- 245 (436)
T ss_pred CCEEEECceeccch-hh----ccCHHHHHHHHHHHHHHHHHHHHHh----C---CEEEEECcHHHh-CCCCCC-C-----
Confidence 89999999874321 11 1233577899999999999887643 1 389999987543 210000 0
Q ss_pred cccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.+...+.+..+......|+.+|.+.+.+++.+.+.+ ++++..+.|+.|..|..
T Consensus 246 ------------~~E~~~~~~~p~~p~s~Yg~SK~~aE~~~~~y~~~~----~l~~~ilR~~~vYGp~~ 298 (436)
T PLN02166 246 ------------QKETYWGNVNPIGERSCYDEGKRTAETLAMDYHRGA----GVEVRIARIFNTYGPRM 298 (436)
T ss_pred ------------CCccccccCCCCCCCCchHHHHHHHHHHHHHHHHHh----CCCeEEEEEccccCCCC
Confidence 000000011233345689999999998888776654 89999999999988753
|
|
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.3e-12 Score=116.43 Aligned_cols=183 Identities=22% Similarity=0.172 Sum_probs=129.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcC-CcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~G-a~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
+..+++||||+|.||+++++.|.+++ ...|.+.+.......-..+.......++.++++|+.|..++.+.++
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~~~~~v~~~~~D~~~~~~i~~a~~------- 75 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGFRSGRVTVILGDLLDANSISNAFQ------- 75 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcccCCceeEEecchhhhhhhhhhcc-------
Confidence 45699999999999999999999998 5688888876432111111111134578999999999998887766
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCC
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (350)
+. .+||+|....+ . .-..+-+..+++|+.|+.++.+.+...-.+ ++|++||.....++..
T Consensus 76 ~~-~Vvh~aa~~~~-~----~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~------~lIYtSs~~Vvf~g~~-------- 135 (361)
T KOG1430|consen 76 GA-VVVHCAASPVP-D----FVENDRDLAMRVNVNGTLNVIEACKELGVK------RLIYTSSAYVVFGGEP-------- 135 (361)
T ss_pred Cc-eEEEeccccCc-c----ccccchhhheeecchhHHHHHHHHHHhCCC------EEEEecCceEEeCCee--------
Confidence 45 77888776433 1 222256788999999999999998765443 9999999887654311
Q ss_pred ccccccccccCCCCCCCcccCCCCCC--chhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 244 LGDLRGFAGGLNGLNSSSMIDGGDFD--GAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
..+..|..|+| ....|+.||+--+.+++.... ..++...++.|-.|.+|+-
T Consensus 136 ---------------~~n~~E~~p~p~~~~d~Y~~sKa~aE~~Vl~an~----~~~l~T~aLR~~~IYGpgd 188 (361)
T KOG1430|consen 136 ---------------IINGDESLPYPLKHIDPYGESKALAEKLVLEANG----SDDLYTCALRPPGIYGPGD 188 (361)
T ss_pred ---------------cccCCCCCCCccccccccchHHHHHHHHHHHhcC----CCCeeEEEEccccccCCCC
Confidence 01112222333 235899999987777765443 3478999999999999864
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.5e-12 Score=114.21 Aligned_cols=180 Identities=20% Similarity=0.192 Sum_probs=100.8
Q ss_pred EEcCCCchHHHHHHHHHHcCC-cEEEEEecChhH---HHHHHHHhcc----------CCCceEEEEccCCCHH------H
Q 018819 91 ITGASSGLGLATAKALAETGK-WHIIMACRDFLK---AERAAKSAGM----------AKENYTIMHLDLASLD------S 150 (350)
Q Consensus 91 ItGgs~gIG~~ia~~la~~Ga-~~Vi~~~r~~~~---~~~~~~~l~~----------~~~~v~~~~~Dvs~~~------~ 150 (350)
||||+|.||..+.++|++++. .+|+++.|.... .+.+.+.+.. ...++.++.+|++++. +
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~ 80 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED 80 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence 799999999999999999983 289999997522 2333233321 1468999999999853 3
Q ss_pred HHHHHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCC
Q 018819 151 VRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 230 (350)
Q Consensus 151 v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~ 230 (350)
.+.+.+ .+|+|||||+...... .++...++|+.|+.++++.+.. .+ ..+++++|| +..
T Consensus 81 ~~~L~~-------~v~~IiH~Aa~v~~~~--------~~~~~~~~NV~gt~~ll~la~~----~~--~~~~~~iST-a~v 138 (249)
T PF07993_consen 81 YQELAE-------EVDVIIHCAASVNFNA--------PYSELRAVNVDGTRNLLRLAAQ----GK--RKRFHYIST-AYV 138 (249)
T ss_dssp HHHHHH-------H--EEEE--SS-SBS---------S--EEHHHHHHHHHHHHHHHTS----SS-----EEEEEE-GGG
T ss_pred hhcccc-------ccceeeecchhhhhcc--------cchhhhhhHHHHHHHHHHHHHh----cc--CcceEEecc-ccc
Confidence 333333 5899999999864322 2344778999999999988752 11 138999999 322
Q ss_pred CCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccC
Q 018819 231 TNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIAT 310 (350)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t 310 (350)
.+...+......... ...... ........|..||..-+.+.+..+.+. |+++..+.||.|-+
T Consensus 139 ~~~~~~~~~~~~~~~------------~~~~~~--~~~~~~~gY~~SK~~aE~~l~~a~~~~----g~p~~I~Rp~~i~g 200 (249)
T PF07993_consen 139 AGSRPGTIEEKVYPE------------EEDDLD--PPQGFPNGYEQSKWVAERLLREAAQRH----GLPVTIYRPGIIVG 200 (249)
T ss_dssp TTS-TTT--SSS-HH------------H--EEE----TTSEE-HHHHHHHHHHHHHHHHHHH-------EEEEEE-EEE-
T ss_pred cCCCCCccccccccc------------ccccch--hhccCCccHHHHHHHHHHHHHHHHhcC----CceEEEEecCcccc
Confidence 222111100000000 000000 112234589999999999998887764 89999999999976
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.8e-12 Score=116.29 Aligned_cols=153 Identities=22% Similarity=0.222 Sum_probs=105.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
++||||++|-||.++.+.|.++| +.|+.++|+ .+|++|.+++.+++++. ++|+
T Consensus 2 riLI~GasG~lG~~l~~~l~~~~-~~v~~~~r~---------------------~~dl~d~~~~~~~~~~~-----~pd~ 54 (286)
T PF04321_consen 2 RILITGASGFLGSALARALKERG-YEVIATSRS---------------------DLDLTDPEAVAKLLEAF-----KPDV 54 (286)
T ss_dssp EEEEETTTSHHHHHHHHHHTTTS-EEEEEESTT---------------------CS-TTSHHHHHHHHHHH-------SE
T ss_pred EEEEECCCCHHHHHHHHHHhhCC-CEEEEeCch---------------------hcCCCCHHHHHHHHHHh-----CCCe
Confidence 68999999999999999999999 688888776 68999999999999887 6999
Q ss_pred EEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcccc
Q 018819 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (350)
Q Consensus 168 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (350)
|||+|+.... +.-.++.+..+.+|+.++.++.+.+... +.++|++||....-|.
T Consensus 55 Vin~aa~~~~-----~~ce~~p~~a~~iN~~~~~~la~~~~~~-------~~~li~~STd~VFdG~-------------- 108 (286)
T PF04321_consen 55 VINCAAYTNV-----DACEKNPEEAYAINVDATKNLAEACKER-------GARLIHISTDYVFDGD-------------- 108 (286)
T ss_dssp EEE------H-----HHHHHSHHHHHHHHTHHHHHHHHHHHHC-------T-EEEEEEEGGGS-SS--------------
T ss_pred EeccceeecH-----HhhhhChhhhHHHhhHHHHHHHHHHHHc-------CCcEEEeeccEEEcCC--------------
Confidence 9999998532 1234456788999999999999987542 3499999998655332
Q ss_pred ccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCC
Q 018819 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (350)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~ 311 (350)
...+..|..+..+...|+.+|...+...+... + ....+.++++..+
T Consensus 109 ----------~~~~y~E~d~~~P~~~YG~~K~~~E~~v~~~~-----~---~~~IlR~~~~~g~ 154 (286)
T PF04321_consen 109 ----------KGGPYTEDDPPNPLNVYGRSKLEGEQAVRAAC-----P---NALILRTSWVYGP 154 (286)
T ss_dssp ----------TSSSB-TTS----SSHHHHHHHHHHHHHHHH------S---SEEEEEE-SEESS
T ss_pred ----------cccccccCCCCCCCCHHHHHHHHHHHHHHHhc-----C---CEEEEecceeccc
Confidence 11122233334567899999999777665421 1 5677788888765
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.8e-12 Score=117.42 Aligned_cols=147 Identities=13% Similarity=0.137 Sum_probs=104.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
+++||||+|.||++++++|.++| +.|+++.|+....... .. ..+.++.+|++|++++.++++ ++|+
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g-~~V~~l~R~~~~~~~l----~~--~~v~~v~~Dl~d~~~l~~al~-------g~d~ 67 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEG-YQVRCLVRNLRKASFL----KE--WGAELVYGDLSLPETLPPSFK-------GVTA 67 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCC-CeEEEEEcChHHhhhH----hh--cCCEEEECCCCCHHHHHHHHC-------CCCE
Confidence 69999999999999999999999 6999999986443221 11 247889999999998877665 5899
Q ss_pred EEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcccc
Q 018819 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (350)
Q Consensus 168 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (350)
|||+++.... +.....++|+.++.++.+++... + -.+||++||.....
T Consensus 68 Vi~~~~~~~~----------~~~~~~~~~~~~~~~l~~aa~~~----g--vkr~I~~Ss~~~~~---------------- 115 (317)
T CHL00194 68 IIDASTSRPS----------DLYNAKQIDWDGKLALIEAAKAA----K--IKRFIFFSILNAEQ---------------- 115 (317)
T ss_pred EEECCCCCCC----------CccchhhhhHHHHHHHHHHHHHc----C--CCEEEEeccccccc----------------
Confidence 9998764211 11234567888998888887543 1 13899998854321
Q ss_pred ccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCccc
Q 018819 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA 309 (350)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~ 309 (350)
.+...|..+|...+.+. ++ .|+++..+.|+.+.
T Consensus 116 ---------------------~~~~~~~~~K~~~e~~l----~~----~~l~~tilRp~~~~ 148 (317)
T CHL00194 116 ---------------------YPYIPLMKLKSDIEQKL----KK----SGIPYTIFRLAGFF 148 (317)
T ss_pred ---------------------cCCChHHHHHHHHHHHH----HH----cCCCeEEEeecHHh
Confidence 12245777887755443 22 37899999998654
|
|
| >PF08643 DUF1776: Fungal family of unknown function (DUF1776); InterPro: IPR013952 This is a fungal protein of unknown function | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-10 Score=104.90 Aligned_cols=185 Identities=15% Similarity=0.163 Sum_probs=144.1
Q ss_pred CEEEEEcC-CCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC--
Q 018819 87 GSVIITGA-SSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR-- 163 (350)
Q Consensus 87 ~~~lItGg-s~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g-- 163 (350)
.+|||.|. ..-|++.+|..|-++| ..|+++..+.++......+- ..++.....|..++.++...+.++.+...
T Consensus 4 evVvI~Gs~~~PltR~la~DLeRRG-FIV~v~~~~~ed~~~ve~e~---~~dI~~L~ld~~~~~~~~~~l~~f~~~L~~p 79 (299)
T PF08643_consen 4 EVVVIAGSPHDPLTRSLALDLERRG-FIVYVTVSSAEDEKYVESED---RPDIRPLWLDDSDPSSIHASLSRFASLLSRP 79 (299)
T ss_pred eEEEEECCCCCccHHHHHHHHhhCC-eEEEEEeCCHHHHHHHHhcc---CCCCCCcccCCCCCcchHHHHHHHHHHhcCC
Confidence 48899996 6899999999999999 69999988876655444332 23578888898887777777776655432
Q ss_pred ------------CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEe-ccCCC
Q 018819 164 ------------PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVG-SITGN 230 (350)
Q Consensus 164 ------------~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vS-S~~~~ 230 (350)
.+..||.......+.++++.++.+.|...++.|+.-++.+++.++|++..+...+.+||++. |+...
T Consensus 80 ~~p~~~~~~h~l~L~svi~~Psl~yp~gPie~i~~s~~~~~ln~~ll~~~~~~q~lLPlL~~~~~~~~~iil~~Psi~ss 159 (299)
T PF08643_consen 80 HVPFPGAPPHHLQLKSVIFIPSLSYPTGPIETISPSSWADELNTRLLTPILTIQGLLPLLRSRSNQKSKIILFNPSISSS 159 (299)
T ss_pred CCCCCCCCCceeEEEEEEEecCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEeCchhhc
Confidence 35566766666556789999999999999999999999999999999987321124666655 55554
Q ss_pred CCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccC
Q 018819 231 TNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIAT 310 (350)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t 310 (350)
++ .|.++.-.....++.+|++.|.+|+ .+.+|.|..|..|.++-
T Consensus 160 l~-----------------------------------~PfhspE~~~~~al~~~~~~LrrEl-~~~~I~V~~i~LG~l~i 203 (299)
T PF08643_consen 160 LN-----------------------------------PPFHSPESIVSSALSSFFTSLRREL-RPHNIDVTQIKLGNLDI 203 (299)
T ss_pred cC-----------------------------------CCccCHHHHHHHHHHHHHHHHHHHh-hhcCCceEEEEeeeecc
Confidence 42 3566777888889999999999999 57799999999999876
Q ss_pred C
Q 018819 311 T 311 (350)
Q Consensus 311 ~ 311 (350)
.
T Consensus 204 ~ 204 (299)
T PF08643_consen 204 G 204 (299)
T ss_pred c
Confidence 5
|
One of the proteins P32792 from SWISSPROT has been localised to the mitochondria []. |
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.8e-11 Score=107.07 Aligned_cols=136 Identities=21% Similarity=0.226 Sum_probs=106.4
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcEE
Q 018819 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVL 168 (350)
Q Consensus 89 ~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~l 168 (350)
+||||++|-+|.++++.|. .+ ..|+.++|.. +|++|.+.+.+++.+. ++|+|
T Consensus 3 iLi~G~~GqLG~~L~~~l~-~~-~~v~a~~~~~---------------------~Ditd~~~v~~~i~~~-----~PDvV 54 (281)
T COG1091 3 ILITGANGQLGTELRRALP-GE-FEVIATDRAE---------------------LDITDPDAVLEVIRET-----RPDVV 54 (281)
T ss_pred EEEEcCCChHHHHHHHHhC-CC-ceEEeccCcc---------------------ccccChHHHHHHHHhh-----CCCEE
Confidence 8999999999999999998 44 5888887753 8999999999999987 79999
Q ss_pred EEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccccc
Q 018819 169 VCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLR 248 (350)
Q Consensus 169 v~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~ 248 (350)
||+|+....+. -..+-+..+.+|..|+.++.+++... +..+|++|+-...-|..
T Consensus 55 In~AAyt~vD~-----aE~~~e~A~~vNa~~~~~lA~aa~~~-------ga~lVhiSTDyVFDG~~-------------- 108 (281)
T COG1091 55 INAAAYTAVDK-----AESEPELAFAVNATGAENLARAAAEV-------GARLVHISTDYVFDGEK-------------- 108 (281)
T ss_pred EECcccccccc-----ccCCHHHHHHhHHHHHHHHHHHHHHh-------CCeEEEeecceEecCCC--------------
Confidence 99999865422 23345788999999999999998654 35899999877654431
Q ss_pred cccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHH
Q 018819 249 GFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEF 288 (350)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~l 288 (350)
..+..|..+..+...|+.||.+.+..++..
T Consensus 109 ----------~~~Y~E~D~~~P~nvYG~sKl~GE~~v~~~ 138 (281)
T COG1091 109 ----------GGPYKETDTPNPLNVYGRSKLAGEEAVRAA 138 (281)
T ss_pred ----------CCCCCCCCCCCChhhhhHHHHHHHHHHHHh
Confidence 112333344567789999999988777644
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-10 Score=114.27 Aligned_cols=128 Identities=17% Similarity=0.159 Sum_probs=88.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcC--CcEEEEEecChh---HHHHHHHHh---------c-cC--------CCceE
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETG--KWHIIMACRDFL---KAERAAKSA---------G-MA--------KENYT 139 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~G--a~~Vi~~~r~~~---~~~~~~~~l---------~-~~--------~~~v~ 139 (350)
.++||+++||||+|.||..+++.|++.+ ..+|+++.|... ..+.+..++ . .. ..++.
T Consensus 8 ~~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~ 87 (491)
T PLN02996 8 FLENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVT 87 (491)
T ss_pred HhCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEE
Confidence 4689999999999999999999998764 247888888542 111111111 0 00 14789
Q ss_pred EEEccCCC-------HHHHHHHHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 018819 140 IMHLDLAS-------LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLK 212 (350)
Q Consensus 140 ~~~~Dvs~-------~~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~ 212 (350)
++.+|+++ .+.++.+++ .+|+|||+|+.... . +..+..+++|+.|+.++++++... .
T Consensus 88 ~i~GDl~~~~LGLs~~~~~~~l~~-------~vD~ViH~AA~v~~----~----~~~~~~~~~Nv~gt~~ll~~a~~~-~ 151 (491)
T PLN02996 88 PVPGDISYDDLGVKDSNLREEMWK-------EIDIVVNLAATTNF----D----ERYDVALGINTLGALNVLNFAKKC-V 151 (491)
T ss_pred EEecccCCcCCCCChHHHHHHHHh-------CCCEEEECccccCC----c----CCHHHHHHHHHHHHHHHHHHHHhc-C
Confidence 99999984 333444443 58999999997532 1 245678899999999999987542 1
Q ss_pred cCCCCCCeEEEEeccCCC
Q 018819 213 QSDYPSKRLIIVGSITGN 230 (350)
Q Consensus 213 ~~~~~~g~iV~vSS~~~~ 230 (350)
. -.++|++||...+
T Consensus 152 ~----~k~~V~vST~~vy 165 (491)
T PLN02996 152 K----VKMLLHVSTAYVC 165 (491)
T ss_pred C----CCeEEEEeeeEEe
Confidence 1 1389999987654
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.6e-11 Score=119.35 Aligned_cols=175 Identities=17% Similarity=0.115 Sum_probs=113.0
Q ss_pred EEEEEcCCCchHHHHHHHHH--HcCCcEEEEEecChhH--HHHHHHHhccCCCceEEEEccCCCHHHH--HHHHHHHHHc
Q 018819 88 SVIITGASSGLGLATAKALA--ETGKWHIIMACRDFLK--AERAAKSAGMAKENYTIMHLDLASLDSV--RQFVDTFRRS 161 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la--~~Ga~~Vi~~~r~~~~--~~~~~~~l~~~~~~v~~~~~Dvs~~~~v--~~~~~~~~~~ 161 (350)
++|||||+|.||.++++.|+ ++| ..|++++|+... ......... ..++.++.+|++|++.. ...++.+
T Consensus 2 ~ILVTGatGfIG~~lv~~Ll~~~~g-~~V~~l~R~~~~~~~~~~~~~~~--~~~v~~~~~Dl~~~~~~~~~~~~~~l--- 75 (657)
T PRK07201 2 RYFVTGGTGFIGRRLVSRLLDRRRE-ATVHVLVRRQSLSRLEALAAYWG--ADRVVPLVGDLTEPGLGLSEADIAEL--- 75 (657)
T ss_pred eEEEeCCccHHHHHHHHHHHhcCCC-CEEEEEECcchHHHHHHHHHhcC--CCcEEEEecccCCccCCcCHHHHHHh---
Confidence 69999999999999999999 578 589999996432 222222111 14688999999985310 1112222
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
..+|+|||+|+..... .+ .....++|+.++.++++++... + ..+||++||.... +...+.
T Consensus 76 -~~~D~Vih~Aa~~~~~-----~~---~~~~~~~nv~gt~~ll~~a~~~----~--~~~~v~~SS~~v~-g~~~~~---- 135 (657)
T PRK07201 76 -GDIDHVVHLAAIYDLT-----AD---EEAQRAANVDGTRNVVELAERL----Q--AATFHHVSSIAVA-GDYEGV---- 135 (657)
T ss_pred -cCCCEEEECceeecCC-----CC---HHHHHHHHhHHHHHHHHHHHhc----C--CCeEEEEeccccc-cCccCc----
Confidence 3799999999975321 12 2456789999999998886532 1 2489999997654 210000
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
.+..... .+......|+.||...+.+.+. ..|+++..+.|+.|.++.
T Consensus 136 ---------------~~e~~~~--~~~~~~~~Y~~sK~~~E~~~~~-------~~g~~~~ilRp~~v~G~~ 182 (657)
T PRK07201 136 ---------------FREDDFD--EGQGLPTPYHRTKFEAEKLVRE-------ECGLPWRVYRPAVVVGDS 182 (657)
T ss_pred ---------------cccccch--hhcCCCCchHHHHHHHHHHHHH-------cCCCcEEEEcCCeeeecC
Confidence 0000000 0112235799999998877642 138999999999998753
|
|
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-10 Score=106.17 Aligned_cols=184 Identities=21% Similarity=0.215 Sum_probs=117.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChh---HHHHHHHHhc-------cCCCceEEEEccCCCH------HH
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFL---KAERAAKSAG-------MAKENYTIMHLDLASL------DS 150 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~---~~~~~~~~l~-------~~~~~v~~~~~Dvs~~------~~ 150 (350)
+++++|||+|.||..+..+|..+--.+|++..|-.. ..+++.+.+. ....++..+..|++.+ ..
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~ 80 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERT 80 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHH
Confidence 479999999999999998888765337888777432 2233333333 3456899999999843 33
Q ss_pred HHHHHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCC
Q 018819 151 VRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 230 (350)
Q Consensus 151 v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~ 230 (350)
.+++.+ .+|.||||++..... ..+.+....|+.|+..+++.+.-. + ...+.+|||++..
T Consensus 81 ~~~La~-------~vD~I~H~gA~Vn~v--------~pYs~L~~~NVlGT~evlrLa~~g--k----~Kp~~yVSsisv~ 139 (382)
T COG3320 81 WQELAE-------NVDLIIHNAALVNHV--------FPYSELRGANVLGTAEVLRLAATG--K----PKPLHYVSSISVG 139 (382)
T ss_pred HHHHhh-------hcceEEecchhhccc--------CcHHHhcCcchHhHHHHHHHHhcC--C----CceeEEEeeeeec
Confidence 444433 699999999976432 124567789999999999887522 1 1259999998754
Q ss_pred CCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccC
Q 018819 231 TNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIAT 310 (350)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t 310 (350)
..... .......+ .. .+ . ..........|+.||.+.+.+++.... .|+++..+.||+|-.
T Consensus 140 ~~~~~-----~~~~~~~~----~~--~~--~--~~~~~~~~~GY~~SKwvaE~Lvr~A~~-----rGLpv~I~Rpg~I~g 199 (382)
T COG3320 140 ETEYY-----SNFTVDFD----EI--SP--T--RNVGQGLAGGYGRSKWVAEKLVREAGD-----RGLPVTIFRPGYITG 199 (382)
T ss_pred ccccc-----CCCccccc----cc--cc--c--ccccCccCCCcchhHHHHHHHHHHHhh-----cCCCeEEEecCeeec
Confidence 32100 00000000 00 00 0 001123456899999998777764442 399999999999965
Q ss_pred C
Q 018819 311 T 311 (350)
Q Consensus 311 ~ 311 (350)
+
T Consensus 200 d 200 (382)
T COG3320 200 D 200 (382)
T ss_pred c
Confidence 4
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-10 Score=97.87 Aligned_cols=179 Identities=21% Similarity=0.248 Sum_probs=116.6
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcEE
Q 018819 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVL 168 (350)
Q Consensus 89 ~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~l 168 (350)
|+|+||+|.+|+.+++.|.++| +.|+++.|+.++.++ ..++.++.+|+.|++++.+.++ +.|.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R~~~~~~~--------~~~~~~~~~d~~d~~~~~~al~-------~~d~v 64 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALVRSPSKAED--------SPGVEIIQGDLFDPDSVKAALK-------GADAV 64 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGHHH--------CTTEEEEESCTTCHHHHHHHHT-------TSSEE
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEecCchhccc--------ccccccceeeehhhhhhhhhhh-------hcchh
Confidence 6899999999999999999999 699999999877665 3578999999999988888766 69999
Q ss_pred EEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccccc
Q 018819 169 VCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLR 248 (350)
Q Consensus 169 v~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~ 248 (350)
|+++|.... + ...++.++..+.+.+ -.++|++||....... .+
T Consensus 65 i~~~~~~~~---------~-------------~~~~~~~~~a~~~~~--~~~~v~~s~~~~~~~~-~~------------ 107 (183)
T PF13460_consen 65 IHAAGPPPK---------D-------------VDAAKNIIEAAKKAG--VKRVVYLSSAGVYRDP-PG------------ 107 (183)
T ss_dssp EECCHSTTT---------H-------------HHHHHHHHHHHHHTT--SSEEEEEEETTGTTTC-TS------------
T ss_pred hhhhhhhcc---------c-------------ccccccccccccccc--cccceeeeccccCCCC-Cc------------
Confidence 999976321 1 223344444444443 3489999987654211 00
Q ss_pred cccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhhhhhh
Q 018819 249 GFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPF 328 (350)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~ 328 (350)
.+.. ...+....|...|...+.+. ++ .+++...++||++.++.-. ...+ ...
T Consensus 108 ------------~~~~-~~~~~~~~~~~~~~~~e~~~----~~----~~~~~~ivrp~~~~~~~~~--~~~~---~~~-- 159 (183)
T PF13460_consen 108 ------------LFSD-EDKPIFPEYARDKREAEEAL----RE----SGLNWTIVRPGWIYGNPSR--SYRL---IKE-- 159 (183)
T ss_dssp ------------EEEG-GTCGGGHHHHHHHHHHHHHH----HH----STSEEEEEEESEEEBTTSS--SEEE---ESS--
T ss_pred ------------cccc-ccccchhhhHHHHHHHHHHH----Hh----cCCCEEEEECcEeEeCCCc--ceeE---Eec--
Confidence 0000 00122345666665443222 22 3899999999999776421 1111 000
Q ss_pred HHhhhcCccchhhhhhhccc
Q 018819 329 QKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 329 ~~~~~~~~~s~~~~a~~i~~ 348 (350)
........++.+++|+.+++
T Consensus 160 ~~~~~~~~i~~~DvA~~~~~ 179 (183)
T PF13460_consen 160 GGPQGVNFISREDVAKAIVE 179 (183)
T ss_dssp TSTTSHCEEEHHHHHHHHHH
T ss_pred cCCCCcCcCCHHHHHHHHHH
Confidence 11112357899999988875
|
... |
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5e-11 Score=104.29 Aligned_cols=181 Identities=14% Similarity=0.115 Sum_probs=130.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHH----HHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE----RAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~----~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+|++||||-+|--|.-+|+.|++.| +.|.-+.|...... .+.+.-...+.+++++.+|++|...+.++++.+
T Consensus 2 ~K~ALITGITGQDGsYLa~lLLekG-Y~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v--- 77 (345)
T COG1089 2 GKVALITGITGQDGSYLAELLLEKG-YEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEV--- 77 (345)
T ss_pred CceEEEecccCCchHHHHHHHHhcC-cEEEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhc---
Confidence 5799999999999999999999999 58888777532211 111111223456889999999999999999988
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
.+|-+.|.|+.... ..+.++.+.+.+++..|+++|+.++.-.-.+ ..+|..-||.- ..|
T Consensus 78 --~PdEIYNLaAQS~V-----~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~----~~rfYQAStSE-~fG--------- 136 (345)
T COG1089 78 --QPDEIYNLAAQSHV-----GVSFEQPEYTADVDAIGTLRLLEAIRILGEK----KTRFYQASTSE-LYG--------- 136 (345)
T ss_pred --Cchhheeccccccc-----cccccCcceeeeechhHHHHHHHHHHHhCCc----ccEEEecccHH-hhc---------
Confidence 79999999887543 4567777889999999999999987543221 23666655543 222
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhc--CCCCcEEEEeeC
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFH--EETGIAFASLYP 305 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~~gi~v~~v~P 305 (350)
.....+..+..|+-+.++|+++|......+...+..|. +..||-.|.=+|
T Consensus 137 --------------~v~~~pq~E~TPFyPrSPYAvAKlYa~W~tvNYResYgl~AcnGILFNHESP 188 (345)
T COG1089 137 --------------LVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYGLFACNGILFNHESP 188 (345)
T ss_pred --------------CcccCccccCCCCCCCCHHHHHHHHHHheeeehHhhcCceeecceeecCCCC
Confidence 12344566778889999999999987777776666552 345666665555
|
|
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.1e-10 Score=102.38 Aligned_cols=147 Identities=12% Similarity=0.025 Sum_probs=91.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
+++|||||+|.||.++++.|.++| +.|+... .|++|.+.+...++.. ++|
T Consensus 10 ~kiLVtG~tGfiG~~l~~~L~~~g-~~V~~~~------------------------~~~~~~~~v~~~l~~~-----~~D 59 (298)
T PLN02778 10 LKFLIYGKTGWIGGLLGKLCQEQG-IDFHYGS------------------------GRLENRASLEADIDAV-----KPT 59 (298)
T ss_pred CeEEEECCCCHHHHHHHHHHHhCC-CEEEEec------------------------CccCCHHHHHHHHHhc-----CCC
Confidence 579999999999999999999999 4775321 3455666665555432 689
Q ss_pred EEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccc
Q 018819 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (350)
Q Consensus 167 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (350)
+|||+||...... . +...++....+++|+.++.++++++...- -+++++||...+ +.... .+..
T Consensus 60 ~ViH~Aa~~~~~~-~-~~~~~~p~~~~~~Nv~gt~~ll~aa~~~g-------v~~v~~sS~~vy-~~~~~-~p~~----- 123 (298)
T PLN02778 60 HVFNAAGVTGRPN-V-DWCESHKVETIRANVVGTLTLADVCRERG-------LVLTNYATGCIF-EYDDA-HPLG----- 123 (298)
T ss_pred EEEECCcccCCCC-c-hhhhhCHHHHHHHHHHHHHHHHHHHHHhC-------CCEEEEecceEe-CCCCC-CCcc-----
Confidence 9999999864211 1 11234456789999999999999986531 145556654322 11000 0000
Q ss_pred cccccccCCCCCCCcccCC-CCCCchhchhhhHHHHHHHHHHHHH
Q 018819 247 LRGFAGGLNGLNSSSMIDG-GDFDGAKAYKDSKVCNMLTMQEFHR 290 (350)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~Y~asKaa~~~~~~~la~ 290 (350)
+..+..+. .+.+....|+.||.+.+.+++.++.
T Consensus 124 -----------~~~~~~Ee~~p~~~~s~Yg~sK~~~E~~~~~y~~ 157 (298)
T PLN02778 124 -----------SGIGFKEEDTPNFTGSFYSKTKAMVEELLKNYEN 157 (298)
T ss_pred -----------cCCCCCcCCCCCCCCCchHHHHHHHHHHHHHhhc
Confidence 00001111 1223346899999999988876653
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1e-09 Score=112.44 Aligned_cols=102 Identities=19% Similarity=0.192 Sum_probs=79.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
+++||||+|+||.++++.|+++| +.|++++|+.... . ..++.++.+|++|.+++.++++ .+|+
T Consensus 2 kILVTGATGfIGs~La~~Ll~~G-~~Vv~l~R~~~~~------~---~~~v~~v~gDL~D~~~l~~al~-------~vD~ 64 (854)
T PRK05865 2 RIAVTGASGVLGRGLTARLLSQG-HEVVGIARHRPDS------W---PSSADFIAADIRDATAVESAMT-------GADV 64 (854)
T ss_pred EEEEECCCCHHHHHHHHHHHHCc-CEEEEEECCchhh------c---ccCceEEEeeCCCHHHHHHHHh-------CCCE
Confidence 68999999999999999999999 5899998874321 1 1247789999999999888775 4899
Q ss_pred EEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEec
Q 018819 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (350)
Q Consensus 168 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS 226 (350)
|||+|+.... .+++|+.++.++++++.. .+ .++||++||
T Consensus 65 VVHlAa~~~~--------------~~~vNv~GT~nLLeAa~~----~g--vkr~V~iSS 103 (854)
T PRK05865 65 VAHCAWVRGR--------------NDHINIDGTANVLKAMAE----TG--TGRIVFTSS 103 (854)
T ss_pred EEECCCcccc--------------hHHHHHHHHHHHHHHHHH----cC--CCeEEEECC
Confidence 9999985311 357899999888877543 22 248999987
|
|
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=99.14 E-value=2e-10 Score=101.04 Aligned_cols=101 Identities=16% Similarity=0.188 Sum_probs=77.1
Q ss_pred EEEEEcC-CCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 88 SVIITGA-SSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 88 ~~lItGg-s~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
+=.||.. +||||+++|+.|+++|+ +|+++++.. . +.... ...||+++.++++++++.+.+.++++|
T Consensus 16 VR~itN~SSGgIG~AIA~~la~~Ga-~Vvlv~~~~-~-------l~~~~----~~~~Dv~d~~s~~~l~~~v~~~~g~iD 82 (227)
T TIGR02114 16 VRSITNHSTGHLGKIITETFLSAGH-EVTLVTTKR-A-------LKPEP----HPNLSIREIETTKDLLITLKELVQEHD 82 (227)
T ss_pred ceeecCCcccHHHHHHHHHHHHCCC-EEEEEcChh-h-------ccccc----CCcceeecHHHHHHHHHHHHHHcCCCC
Confidence 3356665 67899999999999996 888877631 1 11100 245899999999999999999999999
Q ss_pred EEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHH
Q 018819 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205 (350)
Q Consensus 167 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~ 205 (350)
++|||||+. +..++.+.+.++|++++. .+.+++.+
T Consensus 83 iLVnnAgv~-d~~~~~~~s~e~~~~~~~---~~~~~~~~ 117 (227)
T TIGR02114 83 ILIHSMAVS-DYTPVYMTDLEQVQASDN---LNEFLSKQ 117 (227)
T ss_pred EEEECCEec-cccchhhCCHHHHhhhcc---hhhhhccc
Confidence 999999985 446788899999998744 45555554
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.2e-09 Score=105.37 Aligned_cols=128 Identities=18% Similarity=0.156 Sum_probs=88.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCC--cEEEEEecChh---HHHHHHHHh---------cc-C--------CCceE
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGK--WHIIMACRDFL---KAERAAKSA---------GM-A--------KENYT 139 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga--~~Vi~~~r~~~---~~~~~~~~l---------~~-~--------~~~v~ 139 (350)
.+++++++||||+|.||..+++.|++.+. .+|+++.|... ..+...+++ ++ . ..++.
T Consensus 116 f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~ 195 (605)
T PLN02503 116 FLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLV 195 (605)
T ss_pred hhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEE
Confidence 46899999999999999999999998652 37888888532 122221111 11 1 24688
Q ss_pred EEEccCCCHH------HHHHHHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhc
Q 018819 140 IMHLDLASLD------SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQ 213 (350)
Q Consensus 140 ~~~~Dvs~~~------~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~ 213 (350)
++.+|++++. ..+.+.+ .+|+|||+|+.... .+.++..+++|+.|+.++++.+... ..
T Consensus 196 ~v~GDl~d~~LGLs~~~~~~L~~-------~vDiVIH~AA~v~f--------~~~~~~a~~vNV~GT~nLLelA~~~-~~ 259 (605)
T PLN02503 196 PVVGNVCESNLGLEPDLADEIAK-------EVDVIINSAANTTF--------DERYDVAIDINTRGPCHLMSFAKKC-KK 259 (605)
T ss_pred EEEeeCCCcccCCCHHHHHHHHh-------cCCEEEECcccccc--------ccCHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 9999999872 3333322 59999999997532 1346778999999999999987543 11
Q ss_pred CCCCCCeEEEEeccCCC
Q 018819 214 SDYPSKRLIIVGSITGN 230 (350)
Q Consensus 214 ~~~~~g~iV~vSS~~~~ 230 (350)
..++|++||...+
T Consensus 260 ----lk~fV~vSTayVy 272 (605)
T PLN02503 260 ----LKLFLQVSTAYVN 272 (605)
T ss_pred ----CCeEEEccCceee
Confidence 1379999886543
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.06 E-value=6e-09 Score=106.40 Aligned_cols=160 Identities=11% Similarity=0.019 Sum_probs=103.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
..+++|||||+|.||+++++.|.++| ..|.. ...|++|.+.+..++... +
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g-~~v~~------------------------~~~~l~d~~~v~~~i~~~-----~ 428 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQG-IAYEY------------------------GKGRLEDRSSLLADIRNV-----K 428 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCC-CeEEe------------------------eccccccHHHHHHHHHhh-----C
Confidence 34579999999999999999999999 46521 124688888887777654 6
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
+|+|||+|+..... .. +...++.+..+++|+.++.++++++... +.++|++||...+-+. ... +.
T Consensus 429 pd~Vih~Aa~~~~~-~~-~~~~~~~~~~~~~N~~gt~~l~~a~~~~-------g~~~v~~Ss~~v~~~~-~~~-~~---- 493 (668)
T PLN02260 429 PTHVFNAAGVTGRP-NV-DWCESHKVETIRANVVGTLTLADVCREN-------GLLMMNFATGCIFEYD-AKH-PE---- 493 (668)
T ss_pred CCEEEECCcccCCC-CC-ChHHhCHHHHHHHHhHHHHHHHHHHHHc-------CCeEEEEcccceecCC-ccc-cc----
Confidence 99999999975321 11 2234456788999999999999998653 1256777664322110 000 00
Q ss_pred cccccccccCCCCCCCcccCCC-CCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeC
Q 018819 245 GDLRGFAGGLNGLNSSSMIDGG-DFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYP 305 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~P 305 (350)
....++.+.. +.+....|+.||.+.+.+++.+... ..+++..+..
T Consensus 494 ------------~~~~p~~E~~~~~~~~~~Yg~sK~~~E~~~~~~~~~----~~~r~~~~~~ 539 (668)
T PLN02260 494 ------------GSGIGFKEEDKPNFTGSFYSKTKAMVEELLREYDNV----CTLRVRMPIS 539 (668)
T ss_pred ------------ccCCCCCcCCCCCCCCChhhHHHHHHHHHHHhhhhh----eEEEEEEecc
Confidence 0000111111 2233468999999999888766422 3677766663
|
|
| >KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.7e-09 Score=94.82 Aligned_cols=186 Identities=15% Similarity=0.141 Sum_probs=129.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC-cEEEEEecCh--hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 87 GSVIITGASSGLGLATAKALAETGK-WHIIMACRDF--LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga-~~Vi~~~r~~--~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
+.++||||.|.||...+..++..-- .+.+.++.-. ..+.. .++.. ...+..++..|+.+...+..++.+ .
T Consensus 7 ~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~~~~-l~~~~-n~p~ykfv~~di~~~~~~~~~~~~-----~ 79 (331)
T KOG0747|consen 7 KNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSNLKN-LEPVR-NSPNYKFVEGDIADADLVLYLFET-----E 79 (331)
T ss_pred ceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccccch-hhhhc-cCCCceEeeccccchHHHHhhhcc-----C
Confidence 6899999999999999999998641 2444443311 11111 11111 234688999999999888777653 4
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCC
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (350)
++|.|+|-|........+ -+--.....|++++..|+++......- -++|.+|+-..+-.+ .+.
T Consensus 80 ~id~vihfaa~t~vd~s~-----~~~~~~~~nnil~t~~Lle~~~~sg~i-----~~fvhvSTdeVYGds-~~~------ 142 (331)
T KOG0747|consen 80 EIDTVIHFAAQTHVDRSF-----GDSFEFTKNNILSTHVLLEAVRVSGNI-----RRFVHVSTDEVYGDS-DED------ 142 (331)
T ss_pred chhhhhhhHhhhhhhhhc-----CchHHHhcCCchhhhhHHHHHHhccCe-----eEEEEecccceecCc-ccc------
Confidence 899999999886543322 122345778999999999998765422 289999987654221 000
Q ss_pred ccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccccc
Q 018819 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 316 (350)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~ 316 (350)
... .+.....+..+|++||+|.+++.+++.+.| |+.+..+.-+.|.+|..+..
T Consensus 143 -------------~~~---~E~s~~nPtnpyAasKaAaE~~v~Sy~~sy----~lpvv~~R~nnVYGP~q~~~ 195 (331)
T KOG0747|consen 143 -------------AVV---GEASLLNPTNPYAASKAAAEMLVRSYGRSY----GLPVVTTRMNNVYGPNQYPE 195 (331)
T ss_pred -------------ccc---cccccCCCCCchHHHHHHHHHHHHHHhhcc----CCcEEEEeccCccCCCcChH
Confidence 000 022234566789999999999999999888 99999999999999986543
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.1e-09 Score=96.98 Aligned_cols=99 Identities=14% Similarity=0.068 Sum_probs=67.2
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcEE
Q 018819 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVL 168 (350)
Q Consensus 89 ~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~l 168 (350)
+|||||+|.||.++++.|+++| ++|++++|+........ ... ..|+.. ... .+....+|+|
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~--------~~~--~~~~~~-~~~-------~~~~~~~D~V 61 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDG-HEVTILTRSPPAGANTK--------WEG--YKPWAP-LAE-------SEALEGADAV 61 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcC-CEEEEEeCCCCCCCccc--------cee--eecccc-cch-------hhhcCCCCEE
Confidence 5899999999999999999999 59999999865432110 001 122222 111 1223479999
Q ss_pred EEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHH
Q 018819 169 VCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLD 209 (350)
Q Consensus 169 v~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~ 209 (350)
||+||...... ..+.+..+..+++|+.++.++.+++..
T Consensus 62 vh~a~~~~~~~---~~~~~~~~~~~~~n~~~~~~l~~a~~~ 99 (292)
T TIGR01777 62 INLAGEPIADK---RWTEERKQEIRDSRIDTTRALVEAIAA 99 (292)
T ss_pred EECCCCCcccc---cCCHHHHHHHHhcccHHHHHHHHHHHh
Confidence 99999743211 234455677889999999999888754
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.5e-09 Score=89.46 Aligned_cols=84 Identities=20% Similarity=0.281 Sum_probs=71.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
+++||||+ |+|..+++.|+++|+ +|++.+|+.+..+.+...+.. ..++.++.+|++|.+++.++++.+.+.++++|+
T Consensus 2 ~vlVtGGt-G~gg~la~~L~~~G~-~V~v~~R~~~~~~~l~~~l~~-~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~id~ 78 (177)
T PRK08309 2 HALVIGGT-GMLKRVSLWLCEKGF-HVSVIARREVKLENVKRESTT-PESITPLPLDYHDDDALKLAIKSTIEKNGPFDL 78 (177)
T ss_pred EEEEECcC-HHHHHHHHHHHHCcC-EEEEEECCHHHHHHHHHHhhc-CCcEEEEEccCCCHHHHHHHHHHHHHHcCCCeE
Confidence 68999998 788889999999995 888889987776666554543 347888999999999999999999888899999
Q ss_pred EEEcccc
Q 018819 168 LVCNAAV 174 (350)
Q Consensus 168 lv~~Ag~ 174 (350)
+|+..-.
T Consensus 79 lv~~vh~ 85 (177)
T PRK08309 79 AVAWIHS 85 (177)
T ss_pred EEEeccc
Confidence 9987654
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.7e-09 Score=113.16 Aligned_cols=199 Identities=18% Similarity=0.203 Sum_probs=117.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcC---CcEEEEEecChhHH---HHHHHHhccC-------CCceEEEEccCCCHHHH
Q 018819 85 RKGSVIITGASSGLGLATAKALAETG---KWHIIMACRDFLKA---ERAAKSAGMA-------KENYTIMHLDLASLDSV 151 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~G---a~~Vi~~~r~~~~~---~~~~~~l~~~-------~~~v~~~~~Dvs~~~~v 151 (350)
..++++|||++|.||.++++.|+++| ..+|+.+.|+.... +...+.+... ..++.++.+|++++.--
T Consensus 970 ~~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lg 1049 (1389)
T TIGR03443 970 TPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFG 1049 (1389)
T ss_pred CCceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCC
Confidence 35789999999999999999999887 34888888864322 2222221111 13688999999864200
Q ss_pred --HHHHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCC
Q 018819 152 --RQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229 (350)
Q Consensus 152 --~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~ 229 (350)
...++++. ..+|++||||+.... ..+ +.....+|+.|+.++++.+... + ..+++++||.+.
T Consensus 1050 l~~~~~~~l~---~~~d~iiH~Aa~~~~-----~~~---~~~~~~~nv~gt~~ll~~a~~~----~--~~~~v~vSS~~v 1112 (1389)
T TIGR03443 1050 LSDEKWSDLT---NEVDVIIHNGALVHW-----VYP---YSKLRDANVIGTINVLNLCAEG----K--AKQFSFVSSTSA 1112 (1389)
T ss_pred cCHHHHHHHH---hcCCEEEECCcEecC-----ccC---HHHHHHhHHHHHHHHHHHHHhC----C--CceEEEEeCeee
Confidence 11122222 268999999997532 122 3344567999999999887532 1 238999999865
Q ss_pred CCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCccc
Q 018819 230 NTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA 309 (350)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~ 309 (350)
+.... . . ...+.. ...+....................|+.||.+.+.+++.... .|++++.+.||.|.
T Consensus 1113 ~~~~~--~-~--~~~~~~--~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~aE~l~~~~~~-----~g~~~~i~Rpg~v~ 1180 (1389)
T TIGR03443 1113 LDTEY--Y-V--NLSDEL--VQAGGAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIREAGK-----RGLRGCIVRPGYVT 1180 (1389)
T ss_pred cCccc--c-c--chhhhh--hhccCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHh-----CCCCEEEECCCccc
Confidence 42110 0 0 000000 00000000000000001112335699999998888765432 38999999999997
Q ss_pred CCc
Q 018819 310 TTG 312 (350)
Q Consensus 310 t~~ 312 (350)
++.
T Consensus 1181 G~~ 1183 (1389)
T TIGR03443 1181 GDS 1183 (1389)
T ss_pred cCC
Confidence 764
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >COG4982 3-oxoacyl-[acyl-carrier protein] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.6e-07 Score=90.27 Aligned_cols=221 Identities=17% Similarity=0.148 Sum_probs=136.4
Q ss_pred ccCCCEEEEEcCC-CchHHHHHHHHHHcCCcEEEEEecC-hhHHHHHHHHh----ccCCCceEEEEccCCCHHHHHHHHH
Q 018819 83 TLRKGSVIITGAS-SGLGLATAKALAETGKWHIIMACRD-FLKAERAAKSA----GMAKENYTIMHLDLASLDSVRQFVD 156 (350)
Q Consensus 83 ~l~~~~~lItGgs-~gIG~~ia~~la~~Ga~~Vi~~~r~-~~~~~~~~~~l----~~~~~~v~~~~~Dvs~~~~v~~~~~ 156 (350)
...++++||||++ +.||.+++..|++.|| +||++..+ .++..+..+.+ ...|..+.++..+..+..+|+.+++
T Consensus 393 ~y~d~valVTGA~~gSIaa~Vv~~LL~gGA-tVI~TTS~~s~~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVdAlIe 471 (866)
T COG4982 393 TYGDKVALVTGASKGSIAAAVVARLLAGGA-TVIATTSRLSEERTEFYRSLYARHARYGAALWVVPANMGSYSDVDALIE 471 (866)
T ss_pred CcccceEEEecCCCcchHHHHHHHHHhCCc-EEEEEcccccHHHHHHHHHHHHhhCCCCceEEEEeccccchhhHHHHHH
Confidence 4578999999999 5699999999999998 66665543 33333444433 4567778889999999999999999
Q ss_pred HHHHcCC--------------CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCC--e
Q 018819 157 TFRRSGR--------------PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSK--R 220 (350)
Q Consensus 157 ~~~~~~g--------------~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g--~ 220 (350)
.|-++.. .+|.+|--|..... +.+.+.... -+..+++-+.....++-.+.+.-..++- .. .
T Consensus 472 wIg~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~-G~l~~agsr-aE~~~rilLw~V~Rliggl~~~~s~r~v-~~R~h 548 (866)
T COG4982 472 WIGDEQTETVGPQSIHIKLAWTPTLLFPFAAPRVS-GELADAGSR-AEFAMRILLWNVLRLIGGLKKQGSSRGV-DTRLH 548 (866)
T ss_pred HhccccccccCCcceecccccCcceeeecccCCcc-CccccCCch-HHHHHHHHHHHHHHHHHHhhhhccccCc-ccceE
Confidence 8855321 25777777766432 444444332 2344555555555555554443222211 12 2
Q ss_pred EEEEeccCCCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEE
Q 018819 221 LIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAF 300 (350)
Q Consensus 221 iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v 300 (350)
+|.-.|. +. +.|.+...|+-||++++.++..|..|-.=..-+.+
T Consensus 549 VVLPgSP--Nr----------------------------------G~FGgDGaYgEsK~aldav~~RW~sEs~Wa~~vsl 592 (866)
T COG4982 549 VVLPGSP--NR----------------------------------GMFGGDGAYGESKLALDAVVNRWHSESSWAARVSL 592 (866)
T ss_pred EEecCCC--CC----------------------------------CccCCCcchhhHHHHHHHHHHHhhccchhhHHHHH
Confidence 3333332 11 23567789999999999998877766310123555
Q ss_pred EEeeCCcccCCcccccchhhHHhhhhhhHHhhhcCccchhhhhhhccc
Q 018819 301 ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 301 ~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
..-..||+...+++..+..+- .-.........|++|.+..|+.
T Consensus 593 ~~A~IGWtrGTGLMg~Ndiiv-----~aiEk~GV~tyS~~EmA~~LLg 635 (866)
T COG4982 593 AHALIGWTRGTGLMGHNDIIV-----AAIEKAGVRTYSTDEMAFNLLG 635 (866)
T ss_pred hhhheeeeccccccCCcchhH-----HHHHHhCceecCHHHHHHHHHh
Confidence 666789999888765443321 1112222334566666666554
|
|
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.5e-08 Score=85.45 Aligned_cols=181 Identities=15% Similarity=0.129 Sum_probs=120.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh-hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~-~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
.+.+.+++||||+|.||.+++..|..+| +.||+++.-. ...+....... ...+..+.-|+..+ ++.
T Consensus 24 p~~~lrI~itGgaGFIgSHLvdkLm~eg-h~VIa~Dn~ftg~k~n~~~~~~--~~~fel~~hdv~~p-----l~~----- 90 (350)
T KOG1429|consen 24 PSQNLRILITGGAGFIGSHLVDKLMTEG-HEVIALDNYFTGRKENLEHWIG--HPNFELIRHDVVEP-----LLK----- 90 (350)
T ss_pred CCCCcEEEEecCcchHHHHHHHHHHhcC-CeEEEEecccccchhhcchhcc--CcceeEEEeechhH-----HHH-----
Confidence 4567899999999999999999999999 6888877532 22222222222 23566777787765 333
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
.+|.++|.|....+.. + . ....+++.+|+.++++++..+.... .|+++.|+..-+ |- +-..|..
T Consensus 91 --evD~IyhLAapasp~~-y-~---~npvktIktN~igtln~lglakrv~-------aR~l~aSTseVY-gd-p~~hpq~ 154 (350)
T KOG1429|consen 91 --EVDQIYHLAAPASPPH-Y-K---YNPVKTIKTNVIGTLNMLGLAKRVG-------ARFLLASTSEVY-GD-PLVHPQV 154 (350)
T ss_pred --HhhhhhhhccCCCCcc-c-c---cCccceeeecchhhHHHHHHHHHhC-------ceEEEeeccccc-CC-cccCCCc
Confidence 4788899988765421 1 1 1224678899999999998876553 378887776543 21 1111111
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
. ..+..-.|...+++|...|...+.++....++. ||.+....+-.+..|.+
T Consensus 155 e-----------------~ywg~vnpigpr~cydegKr~aE~L~~~y~k~~----giE~rIaRifNtyGPrm 205 (350)
T KOG1429|consen 155 E-----------------TYWGNVNPIGPRSCYDEGKRVAETLCYAYHKQE----GIEVRIARIFNTYGPRM 205 (350)
T ss_pred c-----------------ccccccCcCCchhhhhHHHHHHHHHHHHhhccc----CcEEEEEeeecccCCcc
Confidence 1 111122345678899999999888887776664 89998888887777743
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.8e-08 Score=96.39 Aligned_cols=103 Identities=15% Similarity=0.197 Sum_probs=76.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
++|||||+|.||.++++.|.++| +.|++++|..... ....+.++.+|++|.. +.+++. ++|+
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G-~~Vi~ldr~~~~~---------~~~~ve~v~~Dl~d~~-l~~al~-------~~D~ 63 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAG-HTVSGIAQHPHDA---------LDPRVDYVCASLRNPV-LQELAG-------EADA 63 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCC-CEEEEEeCChhhc---------ccCCceEEEccCCCHH-HHHHhc-------CCCE
Confidence 59999999999999999999999 5999998864321 1135788999999973 433322 5899
Q ss_pred EEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccC
Q 018819 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (350)
Q Consensus 168 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~ 228 (350)
|||+|+.... . ...+|+.++.++++++.. .+ .+||++||..
T Consensus 64 VIHLAa~~~~-------~------~~~vNv~Gt~nLleAA~~----~G---vRiV~~SS~~ 104 (699)
T PRK12320 64 VIHLAPVDTS-------A------PGGVGITGLAHVANAAAR----AG---ARLLFVSQAA 104 (699)
T ss_pred EEEcCccCcc-------c------hhhHHHHHHHHHHHHHHH----cC---CeEEEEECCC
Confidence 9999986311 1 114799999999888743 22 3899999764
|
|
| >KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.4e-07 Score=74.78 Aligned_cols=178 Identities=13% Similarity=0.131 Sum_probs=115.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC--C
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG--R 163 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~--g 163 (350)
...++|-||-|.+|.+++..|-.++ +-|.-++-.+.+. + ..-..+..|-+=.++-+.+++++.+.. .
T Consensus 3 agrVivYGGkGALGSacv~~Fkann-ywV~siDl~eNe~--A--------d~sI~V~~~~swtEQe~~v~~~vg~sL~ge 71 (236)
T KOG4022|consen 3 AGRVIVYGGKGALGSACVEFFKANN-YWVLSIDLSENEQ--A--------DSSILVDGNKSWTEQEQSVLEQVGSSLQGE 71 (236)
T ss_pred CceEEEEcCcchHhHHHHHHHHhcC-eEEEEEeeccccc--c--------cceEEecCCcchhHHHHHHHHHHHHhhccc
Confidence 3478999999999999999999999 5676665542211 0 112344555555566667777776543 4
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCC
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (350)
++|.+++-||.+.....-..--..+-+.++.-.+.....-.+....+++. |-++-+......++
T Consensus 72 kvDav~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~-----GGLL~LtGAkaAl~----------- 135 (236)
T KOG4022|consen 72 KVDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKP-----GGLLQLTGAKAALG----------- 135 (236)
T ss_pred ccceEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCC-----CceeeecccccccC-----------
Confidence 89999999987643211100011223344444455544445555555554 33444433333222
Q ss_pred ccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhc-CCCCcEEEEeeCCcccCCcc
Q 018819 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFH-EETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~-~~~gi~v~~v~PG~v~t~~~ 313 (350)
+.|++..|+.+|+|+..++++|+.+-. -+.|-.+.+|-|=..+|||-
T Consensus 136 -----------------------gTPgMIGYGMAKaAVHqLt~SLaak~SGlP~gsaa~~ilPVTLDTPMN 183 (236)
T KOG4022|consen 136 -----------------------GTPGMIGYGMAKAAVHQLTSSLAAKDSGLPDGSAALTILPVTLDTPMN 183 (236)
T ss_pred -----------------------CCCcccchhHHHHHHHHHHHHhcccccCCCCCceeEEEeeeeccCccc
Confidence 247889999999999999999998853 35678899999999999975
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.3e-08 Score=90.98 Aligned_cols=155 Identities=18% Similarity=0.199 Sum_probs=93.3
Q ss_pred CCCEEEEE----cCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHH-------HHHhccCCCceEEEEccCCCHHHHHH
Q 018819 85 RKGSVIIT----GASSGLGLATAKALAETGKWHIIMACRDFLKAERA-------AKSAGMAKENYTIMHLDLASLDSVRQ 153 (350)
Q Consensus 85 ~~~~~lIt----Ggs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~-------~~~l~~~~~~v~~~~~Dvs~~~~v~~ 153 (350)
..+++||| ||+|.||..+++.|+++| +.|+++.|+....... ..++.. ..+.++.+|++| +.+
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G-~~V~~l~R~~~~~~~~~~~~~~~~~~l~~--~~v~~v~~D~~d---~~~ 124 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAG-HEVTLFTRGKEPSQKMKKEPFSRFSELSS--AGVKTVWGDPAD---VKS 124 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCC-CEEEEEecCCcchhhhccCchhhhhHhhh--cCceEEEecHHH---HHh
Confidence 34689999 999999999999999999 6999999976432211 012211 237788899876 333
Q ss_pred HHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCC
Q 018819 154 FVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNT 233 (350)
Q Consensus 154 ~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~ 233 (350)
++. ...+|+|||+++. .. .++..+++++ .+.+ -.+||++||...+ +.
T Consensus 125 ~~~-----~~~~d~Vi~~~~~----------~~-----------~~~~~ll~aa----~~~g--vkr~V~~SS~~vy-g~ 171 (378)
T PLN00016 125 KVA-----GAGFDVVYDNNGK----------DL-----------DEVEPVADWA----KSPG--LKQFLFCSSAGVY-KK 171 (378)
T ss_pred hhc-----cCCccEEEeCCCC----------CH-----------HHHHHHHHHH----HHcC--CCEEEEEccHhhc-CC
Confidence 332 1369999998652 11 1223344443 3322 2489999997543 21
Q ss_pred CCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 234 LAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
... .+..+..+.. .+. +|...+.+.+ + .+++++.+.|+.+.++..
T Consensus 172 ~~~-----------------------~p~~E~~~~~---p~~-sK~~~E~~l~----~----~~l~~~ilRp~~vyG~~~ 216 (378)
T PLN00016 172 SDE-----------------------PPHVEGDAVK---PKA-GHLEVEAYLQ----K----LGVNWTSFRPQYIYGPGN 216 (378)
T ss_pred CCC-----------------------CCCCCCCcCC---Ccc-hHHHHHHHHH----H----cCCCeEEEeceeEECCCC
Confidence 000 0011111111 111 6777665432 3 389999999999988753
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.7e-08 Score=88.66 Aligned_cols=76 Identities=14% Similarity=0.152 Sum_probs=59.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC-Cc
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP-LD 166 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~-id 166 (350)
+++||||+|.||+.++++|.++| +.|.++.|+.+... . ..+..+.+|+.|++++..+++.. +.... +|
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g-~~V~~~~R~~~~~~-------~--~~~~~~~~d~~d~~~l~~a~~~~-~~~~g~~d 69 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAAS-VPFLVASRSSSSSA-------G--PNEKHVKFDWLDEDTWDNPFSSD-DGMEPEIS 69 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCC-CcEEEEeCCCcccc-------C--CCCccccccCCCHHHHHHHHhcc-cCcCCcee
Confidence 37999999999999999999999 58999999865431 1 23556789999999999888643 22335 89
Q ss_pred EEEEcccc
Q 018819 167 VLVCNAAV 174 (350)
Q Consensus 167 ~lv~~Ag~ 174 (350)
.++++++.
T Consensus 70 ~v~~~~~~ 77 (285)
T TIGR03649 70 AVYLVAPP 77 (285)
T ss_pred EEEEeCCC
Confidence 99998764
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.7e-08 Score=87.90 Aligned_cols=84 Identities=19% Similarity=0.198 Sum_probs=66.4
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh---hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF---LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~---~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
.+++|+++|+|+ ||+|++++..|++.|+.+|++++|+. ++.+++.+++...+..+.+..+|+++.+++++.++
T Consensus 123 ~~~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~--- 198 (289)
T PRK12548 123 DVKGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIA--- 198 (289)
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhc---
Confidence 457899999999 69999999999999987799999986 66777777665444455667789988777765444
Q ss_pred HcCCCCcEEEEcccc
Q 018819 160 RSGRPLDVLVCNAAV 174 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~ 174 (350)
..|+||||..+
T Consensus 199 ----~~DilINaTp~ 209 (289)
T PRK12548 199 ----SSDILVNATLV 209 (289)
T ss_pred ----cCCEEEEeCCC
Confidence 46999999765
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.4e-07 Score=82.86 Aligned_cols=117 Identities=16% Similarity=0.182 Sum_probs=70.1
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcEE
Q 018819 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVL 168 (350)
Q Consensus 89 ~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~l 168 (350)
++||||+|-||++++..|.+.| +.|+++.|+....+... ... +...+.+....+ .++|+|
T Consensus 1 IliTGgTGlIG~~L~~~L~~~g-h~v~iltR~~~~~~~~~----------~~~---v~~~~~~~~~~~------~~~Dav 60 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGG-HQVTILTRRPPKASQNL----------HPN---VTLWEGLADALT------LGIDAV 60 (297)
T ss_pred CeEeccccchhHHHHHHHHhCC-CeEEEEEcCCcchhhhc----------Ccc---ccccchhhhccc------CCCCEE
Confidence 5899999999999999999999 69999999876544321 110 111122222211 169999
Q ss_pred EEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCC
Q 018819 169 VCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNT 233 (350)
Q Consensus 169 v~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~ 233 (350)
||.||..-..+ ..+.+.=+..++.-+..+ +.+.....+.+. +.++..-+|..|++|.
T Consensus 61 INLAG~~I~~r---rWt~~~K~~i~~SRi~~T----~~L~e~I~~~~~-~P~~~isaSAvGyYG~ 117 (297)
T COG1090 61 INLAGEPIAER---RWTEKQKEEIRQSRINTT----EKLVELIAASET-KPKVLISASAVGYYGH 117 (297)
T ss_pred EECCCCccccc---cCCHHHHHHHHHHHhHHH----HHHHHHHHhccC-CCcEEEecceEEEecC
Confidence 99999753222 145555555555544444 444444432221 2345555666677654
|
|
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.5e-07 Score=87.86 Aligned_cols=78 Identities=23% Similarity=0.274 Sum_probs=60.9
Q ss_pred ccCCCEEEEEcC----------------CCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCC
Q 018819 83 TLRKGSVIITGA----------------SSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA 146 (350)
Q Consensus 83 ~l~~~~~lItGg----------------s~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs 146 (350)
+++||++||||| +|++|+++|+.|+++|+ .|++++++.. .. . . . .+..+|++
T Consensus 185 ~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga-~V~~v~~~~~-~~-----~--~-~--~~~~~dv~ 252 (399)
T PRK05579 185 DLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGA-DVTLVSGPVN-LP-----T--P-A--GVKRIDVE 252 (399)
T ss_pred ccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCC-EEEEeCCCcc-cc-----C--C-C--CcEEEccC
Confidence 578999999999 55599999999999997 8888887642 11 1 1 1 13468999
Q ss_pred CHHHHHHHHHHHHHcCCCCcEEEEccccC
Q 018819 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVY 175 (350)
Q Consensus 147 ~~~~v~~~~~~~~~~~g~id~lv~~Ag~~ 175 (350)
+.+++.+.+. +.++++|++|||||+.
T Consensus 253 ~~~~~~~~v~---~~~~~~DilI~~Aav~ 278 (399)
T PRK05579 253 SAQEMLDAVL---AALPQADIFIMAAAVA 278 (399)
T ss_pred CHHHHHHHHH---HhcCCCCEEEEccccc
Confidence 9888777665 4567899999999985
|
|
| >KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.6e-06 Score=82.62 Aligned_cols=128 Identities=20% Similarity=0.211 Sum_probs=90.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHc--CCcEEEEEecCh------hHHH-----HHHHHhcc----CCCceEEEEccC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAET--GKWHIIMACRDF------LKAE-----RAAKSAGM----AKENYTIMHLDL 145 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~--Ga~~Vi~~~r~~------~~~~-----~~~~~l~~----~~~~v~~~~~Dv 145 (350)
.++||+++||||+|.+|+.+...|+.. ...+++++-|.. ++.+ .+.+.+.+ .-.++..+.+|+
T Consensus 9 f~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi 88 (467)
T KOG1221|consen 9 FYKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDI 88 (467)
T ss_pred HhCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceeccccc
Confidence 578999999999999999999999874 345788887742 1111 11222221 224688889999
Q ss_pred CCHH------HHHHHHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCC
Q 018819 146 ASLD------SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSK 219 (350)
Q Consensus 146 s~~~------~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g 219 (350)
++++ +.+.+. ..+|++||+|+.... .|-++..+.+|+.|+.++.+.+... .+- .
T Consensus 89 ~~~~LGis~~D~~~l~-------~eV~ivih~AAtvrF--------de~l~~al~iNt~Gt~~~l~lak~~-~~l----~ 148 (467)
T KOG1221|consen 89 SEPDLGISESDLRTLA-------DEVNIVIHSAATVRF--------DEPLDVALGINTRGTRNVLQLAKEM-VKL----K 148 (467)
T ss_pred cCcccCCChHHHHHHH-------hcCCEEEEeeeeecc--------chhhhhhhhhhhHhHHHHHHHHHHh-hhh----h
Confidence 8764 333222 269999999998643 2456788999999999999987654 332 2
Q ss_pred eEEEEeccCCC
Q 018819 220 RLIIVGSITGN 230 (350)
Q Consensus 220 ~iV~vSS~~~~ 230 (350)
.+|.+|.....
T Consensus 149 ~~vhVSTAy~n 159 (467)
T KOG1221|consen 149 ALVHVSTAYSN 159 (467)
T ss_pred eEEEeehhhee
Confidence 79999987655
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.1e-06 Score=85.74 Aligned_cols=125 Identities=15% Similarity=0.146 Sum_probs=84.6
Q ss_pred EEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcEEE
Q 018819 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLV 169 (350)
Q Consensus 90 lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~lv 169 (350)
+|+||++|+|.++++.|...|+ .|+.+.+..... ......+++.+|
T Consensus 42 ~l~~~~~g~~~~~~~~~~~~g~-~v~~~~~~~~~~---------------------------------~~~~~~~~~~~~ 87 (450)
T PRK08261 42 VLVGGAGRLAEALAALLAGLGY-DVVANNDGGLTW---------------------------------AAGWGDRFGALV 87 (450)
T ss_pred eEEccCchhHHHHHHHHhhCCC-eeeecCcccccc---------------------------------ccCcCCcccEEE
Confidence 3778889999999999999996 888766543210 000012445444
Q ss_pred EccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcccccc
Q 018819 170 CNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRG 249 (350)
Q Consensus 170 ~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~ 249 (350)
.-+-.. .+.+++ .+.+.+.+..++.|.. +|+||+++|..+..
T Consensus 88 ~d~~~~--------~~~~~l--------~~~~~~~~~~l~~l~~----~griv~i~s~~~~~------------------ 129 (450)
T PRK08261 88 FDATGI--------TDPADL--------KALYEFFHPVLRSLAP----CGRVVVLGRPPEAA------------------ 129 (450)
T ss_pred EECCCC--------CCHHHH--------HHHHHHHHHHHHhccC----CCEEEEEccccccC------------------
Confidence 322111 112222 2444566777777754 47999999976642
Q ss_pred ccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcc
Q 018819 250 FAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI 308 (350)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v 308 (350)
+...|+++|+++.+++++++.|+ +.++++++|.|+..
T Consensus 130 --------------------~~~~~~~akaal~gl~rsla~E~--~~gi~v~~i~~~~~ 166 (450)
T PRK08261 130 --------------------ADPAAAAAQRALEGFTRSLGKEL--RRGATAQLVYVAPG 166 (450)
T ss_pred --------------------CchHHHHHHHHHHHHHHHHHHHh--hcCCEEEEEecCCC
Confidence 23469999999999999999998 45999999999873
|
|
| >KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.9e-06 Score=71.61 Aligned_cols=165 Identities=13% Similarity=0.110 Sum_probs=105.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC--cEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 87 GSVIITGASSGLGLATAKALAETGK--WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga--~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
++++|||++|=.|.+|.+.+.++|. .+.++.+.. .||+++.++.++++++. +
T Consensus 2 ~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~sk---------------------d~DLt~~a~t~~lF~~e-----k 55 (315)
T KOG1431|consen 2 KKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGSK---------------------DADLTNLADTRALFESE-----K 55 (315)
T ss_pred ceEEEecCCchHHHHHHHHHHhcCCCCcceEEeccc---------------------cccccchHHHHHHHhcc-----C
Confidence 5799999999999999999999884 234443322 48999999999999975 6
Q ss_pred CcEEEEccccCCCCCCCCC--CCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 165 LDVLVCNAAVYLPTAKEPT--FTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~--~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+..+||.|+..+ +.+.+ ...+.|...+++| -++++.+..+-.+ ++|++.|..-.- ...+ ++
T Consensus 56 PthVIhlAAmVG--Glf~N~~ynldF~r~Nl~in----dNVlhsa~e~gv~------K~vsclStCIfP----dkt~-yP 118 (315)
T KOG1431|consen 56 PTHVIHLAAMVG--GLFHNNTYNLDFIRKNLQIN----DNVLHSAHEHGVK------KVVSCLSTCIFP----DKTS-YP 118 (315)
T ss_pred CceeeehHhhhc--chhhcCCCchHHHhhcceec----hhHHHHHHHhchh------hhhhhcceeecC----CCCC-CC
Confidence 778888886543 33332 3456666665555 3344444433222 566655544221 1111 00
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
.. ....-.+.+-|....|+.+|..+.-..+.++.++ |-...++.|-.+..|.
T Consensus 119 Id--------------Etmvh~gpphpsN~gYsyAKr~idv~n~aY~~qh----g~~~tsviPtNvfGph 170 (315)
T KOG1431|consen 119 ID--------------ETMVHNGPPHPSNFGYSYAKRMIDVQNQAYRQQH----GRDYTSVIPTNVFGPH 170 (315)
T ss_pred CC--------------HHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHh----CCceeeeccccccCCC
Confidence 00 0001112234666789999988888778888776 7778888888887764
|
|
| >KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.43 E-value=3e-06 Score=74.75 Aligned_cols=127 Identities=23% Similarity=0.216 Sum_probs=93.9
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
+...+|-++-|.||+|.+|+-++.+|++.| ..||+-.|..+..-.-.+-+... +++.++..|+.|+++|+++++
T Consensus 56 RsS~sGiVaTVFGAtGFlGryvvnklak~G-SQviiPyR~d~~~~r~lkvmGdL-GQvl~~~fd~~DedSIr~vvk---- 129 (391)
T KOG2865|consen 56 RSSVSGIVATVFGATGFLGRYVVNKLAKMG-SQVIIPYRGDEYDPRHLKVMGDL-GQVLFMKFDLRDEDSIRAVVK---- 129 (391)
T ss_pred cccccceEEEEecccccccHHHHHHHhhcC-CeEEEeccCCccchhheeecccc-cceeeeccCCCCHHHHHHHHH----
Confidence 345678889999999999999999999999 69999888654322222222333 368999999999999999988
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNT 231 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~ 231 (350)
.-+++||..|--.+.+ +.+. -++|+.++-.+.+.+...-.+ ++|.+|+..+..
T Consensus 130 ---~sNVVINLIGrd~eTk---nf~f------~Dvn~~~aerlAricke~GVe------rfIhvS~Lganv 182 (391)
T KOG2865|consen 130 ---HSNVVINLIGRDYETK---NFSF------EDVNVHIAERLARICKEAGVE------RFIHVSCLGANV 182 (391)
T ss_pred ---hCcEEEEeeccccccC---Cccc------ccccchHHHHHHHHHHhhChh------heeehhhccccc
Confidence 4588999998643323 2233 357888888888877654443 899999877553
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.8e-06 Score=71.63 Aligned_cols=75 Identities=17% Similarity=0.253 Sum_probs=57.7
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcEE
Q 018819 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVL 168 (350)
Q Consensus 89 ~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~l 168 (350)
|+|+||+|.+|+.+++.|.+.| ..|.++.|+... ...+.++..| +.++.+|+.|.+++.++++ ++|.+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~-~~V~~l~R~~~~--~~~~~l~~~g--~~vv~~d~~~~~~l~~al~-------g~d~v 68 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAG-FSVRALVRDPSS--DRAQQLQALG--AEVVEADYDDPESLVAALK-------GVDAV 68 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-GCEEEEESSSHH--HHHHHHHHTT--TEEEES-TT-HHHHHHHHT-------TCSEE
T ss_pred CEEECCccHHHHHHHHHHHhCC-CCcEEEEeccch--hhhhhhhccc--ceEeecccCCHHHHHHHHc-------CCceE
Confidence 6899999999999999999988 699999998632 2223333333 4667999999999988877 79999
Q ss_pred EEccccC
Q 018819 169 VCNAAVY 175 (350)
Q Consensus 169 v~~Ag~~ 175 (350)
|++.+..
T Consensus 69 ~~~~~~~ 75 (233)
T PF05368_consen 69 FSVTPPS 75 (233)
T ss_dssp EEESSCS
T ss_pred EeecCcc
Confidence 9887754
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.9e-06 Score=72.98 Aligned_cols=83 Identities=19% Similarity=0.283 Sum_probs=64.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
++++++++|+||+|++|+.+++.|+++|+ +|++++|+.++.++..+.+.... ......+|..+.+++.+.++
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~------ 96 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRDLERAQKAADSLRARF-GEGVGAVETSDDAARAAAIK------ 96 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhhc-CCcEEEeeCCCHHHHHHHHh------
Confidence 45778999999999999999999999995 99999999888877777664211 23455678888888777664
Q ss_pred CCCcEEEEcccc
Q 018819 163 RPLDVLVCNAAV 174 (350)
Q Consensus 163 g~id~lv~~Ag~ 174 (350)
..|++|++...
T Consensus 97 -~~diVi~at~~ 107 (194)
T cd01078 97 -GADVVFAAGAA 107 (194)
T ss_pred -cCCEEEECCCC
Confidence 57888886543
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.8e-06 Score=74.07 Aligned_cols=99 Identities=20% Similarity=0.210 Sum_probs=64.3
Q ss_pred EEEEEcCCCc-hHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 88 SVIITGASSG-LGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 88 ~~lItGgs~g-IG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
+=.||+.++| ||+++|+.|+++|+ .|++++|..... ......+.++.++ +.+ ++.+.+.+.++.+|
T Consensus 17 VR~itN~SSG~iG~aLA~~L~~~G~-~V~li~r~~~~~-------~~~~~~v~~i~v~--s~~---~m~~~l~~~~~~~D 83 (229)
T PRK06732 17 VRGITNHSTGQLGKIIAETFLAAGH-EVTLVTTKTAVK-------PEPHPNLSIIEIE--NVD---DLLETLEPLVKDHD 83 (229)
T ss_pred ceeecCccchHHHHHHHHHHHhCCC-EEEEEECccccc-------CCCCCCeEEEEEe--cHH---HHHHHHHHHhcCCC
Confidence 4577877765 99999999999995 888887753210 0011245555542 222 23333333345799
Q ss_pred EEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHH
Q 018819 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGH 200 (350)
Q Consensus 167 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~ 200 (350)
++|||||+.. ..+....+.++|..++++|....
T Consensus 84 ivIh~AAvsd-~~~~~~~~~~~~~~~~~v~~~~~ 116 (229)
T PRK06732 84 VLIHSMAVSD-YTPVYMTDLEEVSASDNLNEFLT 116 (229)
T ss_pred EEEeCCccCC-ceehhhhhhhhhhhhhhhhhhhc
Confidence 9999999864 34555667888999988875443
|
|
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.5e-06 Score=80.71 Aligned_cols=79 Identities=22% Similarity=0.349 Sum_probs=59.6
Q ss_pred ccCCCEEEEEcC---------------CCc-hHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCC
Q 018819 83 TLRKGSVIITGA---------------SSG-LGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA 146 (350)
Q Consensus 83 ~l~~~~~lItGg---------------s~g-IG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs 146 (350)
+++||++||||| |+| +|.++|+.|..+|+ +|+++.+..... . .. ....+|++
T Consensus 182 ~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga-~V~~~~g~~~~~------~---~~--~~~~~~v~ 249 (390)
T TIGR00521 182 DLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGA-DVTLITGPVSLL------T---PP--GVKSIKVS 249 (390)
T ss_pred ccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCC-EEEEeCCCCccC------C---CC--CcEEEEec
Confidence 478999999999 666 99999999999997 777776653221 1 11 22568999
Q ss_pred CHHHH-HHHHHHHHHcCCCCcEEEEccccCC
Q 018819 147 SLDSV-RQFVDTFRRSGRPLDVLVCNAAVYL 176 (350)
Q Consensus 147 ~~~~v-~~~~~~~~~~~g~id~lv~~Ag~~~ 176 (350)
+.+++ +.++++. ++.+|++|+|||+..
T Consensus 250 ~~~~~~~~~~~~~---~~~~D~~i~~Aavsd 277 (390)
T TIGR00521 250 TAEEMLEAALNEL---AKDFDIFISAAAVAD 277 (390)
T ss_pred cHHHHHHHHHHhh---cccCCEEEEcccccc
Confidence 99988 5555443 467999999999963
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.8e-06 Score=74.52 Aligned_cols=184 Identities=14% Similarity=0.122 Sum_probs=117.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh-----hHHHHHHHHh-ccCCCceEEEEccCCCHHHHHHHHHHH
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-----LKAERAAKSA-GMAKENYTIMHLDLASLDSVRQFVDTF 158 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~-----~~~~~~~~~l-~~~~~~v~~~~~Dvs~~~~v~~~~~~~ 158 (350)
..|++||||-+|-=|.-+|..|+.+| +.|.-+-|.. .+.+.+...- ...+......-.|++|...+.++++.+
T Consensus 27 ~rkvALITGItGQDGSYLaEfLL~Kg-YeVHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~i 105 (376)
T KOG1372|consen 27 PRKVALITGITGQDGSYLAEFLLSKG-YEVHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLISTI 105 (376)
T ss_pred cceEEEEecccCCCchHHHHHHHhCC-ceeeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhcc
Confidence 45699999999999999999999999 5776655532 2333322211 123556777889999999999999987
Q ss_pred HHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCC
Q 018819 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (350)
Q Consensus 159 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (350)
.++-+.|.|...... .+.+-.+.+-++...|++.|+.++...-...+ -++-- .|.+-..|
T Consensus 106 -----kPtEiYnLaAQSHVk-----vSFdlpeYTAeVdavGtLRlLdAi~~c~l~~~---VrfYQ-AstSElyG------ 165 (376)
T KOG1372|consen 106 -----KPTEVYNLAAQSHVK-----VSFDLPEYTAEVDAVGTLRLLDAIRACRLTEK---VRFYQ-ASTSELYG------ 165 (376)
T ss_pred -----CchhhhhhhhhcceE-----EEeecccceeeccchhhhhHHHHHHhcCcccc---eeEEe-cccHhhcc------
Confidence 677788888765432 23333345566788899999988765433321 13332 33333322
Q ss_pred CCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhh--cCCCCcEEEEeeCC
Q 018819 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRF--HEETGIAFASLYPG 306 (350)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~--~~~~gi~v~~v~PG 306 (350)
.....+..+..|+-+.++|+++|...-.++-.++..| .+..||-.|.=+|-
T Consensus 166 -----------------kv~e~PQsE~TPFyPRSPYa~aKmy~~WivvNyREAYnmfAcNGILFNHESPR 218 (376)
T KOG1372|consen 166 -----------------KVQEIPQSETTPFYPRSPYAAAKMYGYWIVVNYREAYNMFACNGILFNHESPR 218 (376)
T ss_pred -----------------cccCCCcccCCCCCCCChhHHhhhhheEEEEEhHHhhcceeeccEeecCCCCc
Confidence 1233455667788889999999987433332333222 14457777766663
|
|
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.9e-05 Score=71.52 Aligned_cols=129 Identities=18% Similarity=0.213 Sum_probs=82.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHH-HHHHHHHHHcC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSV-RQFVDTFRRSG 162 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v-~~~~~~~~~~~ 162 (350)
.+..+++|+||+|++|+-+++.|.++| ..|..+.|+.++.+.... +.........+..|.....++ ..+++.+.
T Consensus 77 ~~~~~VlVvGatG~vG~~iv~~llkrg-f~vra~VRd~~~a~~~~~-~~~~d~~~~~v~~~~~~~~d~~~~~~~~~~--- 151 (411)
T KOG1203|consen 77 KKPTTVLVVGATGKVGRRIVKILLKRG-FSVRALVRDEQKAEDLLG-VFFVDLGLQNVEADVVTAIDILKKLVEAVP--- 151 (411)
T ss_pred CCCCeEEEecCCCchhHHHHHHHHHCC-CeeeeeccChhhhhhhhc-ccccccccceeeeccccccchhhhhhhhcc---
Confidence 356699999999999999999999999 699999999877776655 111112233444454444333 33333221
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNT 231 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~ 231 (350)
-...+++-++|.-.... +..--..+...|..++.+++...-.+ ++|++||+.+..
T Consensus 152 ~~~~~v~~~~ggrp~~e--------d~~~p~~VD~~g~knlvdA~~~aGvk------~~vlv~si~~~~ 206 (411)
T KOG1203|consen 152 KGVVIVIKGAGGRPEEE--------DIVTPEKVDYEGTKNLVDACKKAGVK------RVVLVGSIGGTK 206 (411)
T ss_pred ccceeEEecccCCCCcc--------cCCCcceecHHHHHHHHHHHHHhCCc------eEEEEEeecCcc
Confidence 13556777776532211 11222345667888888888554443 899999987763
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.1e-05 Score=68.41 Aligned_cols=73 Identities=21% Similarity=0.211 Sum_probs=62.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
.+|||||+|.+|.+++++|.++| +.|.+..|+.+...... ..+.+...|+.++.++...++ ++|.
T Consensus 2 ~ilV~GatG~~G~~~~~~L~~~~-~~v~~~~r~~~~~~~~~-------~~v~~~~~d~~~~~~l~~a~~-------G~~~ 66 (275)
T COG0702 2 KILVTGATGFVGGAVVRELLARG-HEVRAAVRNPEAAAALA-------GGVEVVLGDLRDPKSLVAGAK-------GVDG 66 (275)
T ss_pred eEEEEecccchHHHHHHHHHhCC-CEEEEEEeCHHHHHhhc-------CCcEEEEeccCCHhHHHHHhc-------cccE
Confidence 68999999999999999999999 69999999987766553 468889999999999888777 6888
Q ss_pred EEEccccC
Q 018819 168 LVCNAAVY 175 (350)
Q Consensus 168 lv~~Ag~~ 175 (350)
+++..+..
T Consensus 67 ~~~i~~~~ 74 (275)
T COG0702 67 VLLISGLL 74 (275)
T ss_pred EEEEeccc
Confidence 88887764
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.5e-05 Score=74.81 Aligned_cols=78 Identities=24% Similarity=0.431 Sum_probs=66.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
+.+||.|+ |++|+.+|..|+++|...|.+.+|+.++..++.+... .++.++++|+.|.+++.+++++ .|
T Consensus 2 ~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~---~~v~~~~vD~~d~~al~~li~~-------~d 70 (389)
T COG1748 2 MKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG---GKVEALQVDAADVDALVALIKD-------FD 70 (389)
T ss_pred CcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc---ccceeEEecccChHHHHHHHhc-------CC
Confidence 36889998 9999999999999997799999999888777766543 3789999999999999888873 49
Q ss_pred EEEEccccC
Q 018819 167 VLVCNAAVY 175 (350)
Q Consensus 167 ~lv~~Ag~~ 175 (350)
++||++...
T Consensus 71 ~VIn~~p~~ 79 (389)
T COG1748 71 LVINAAPPF 79 (389)
T ss_pred EEEEeCCch
Confidence 999998653
|
|
| >KOG2774 consensus NAD dependent epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.9e-06 Score=71.36 Aligned_cols=172 Identities=23% Similarity=0.233 Sum_probs=110.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHH-cCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAE-TGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~-~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
...+||||+.|-+|..+|..|-. .|-..||+.+--.....- -..| -++-.|+-|...+++++-. .+
T Consensus 44 ~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp~~V-----~~~G---PyIy~DILD~K~L~eIVVn-----~R 110 (366)
T KOG2774|consen 44 APRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKPPANV-----TDVG---PYIYLDILDQKSLEEIVVN-----KR 110 (366)
T ss_pred CCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCCchhh-----cccC---CchhhhhhccccHHHhhcc-----cc
Confidence 34799999999999999998865 475677776543222111 1112 3556788888888776543 38
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
||-+||-.+..... -+.+.-...++|+.|..++++.+..+- --||+-|.-|..|..... .
T Consensus 111 IdWL~HfSALLSAv------GE~NVpLA~~VNI~GvHNil~vAa~~k--------L~iFVPSTIGAFGPtSPR---N--- 170 (366)
T KOG2774|consen 111 IDWLVHFSALLSAV------GETNVPLALQVNIRGVHNILQVAAKHK--------LKVFVPSTIGAFGPTSPR---N--- 170 (366)
T ss_pred cceeeeHHHHHHHh------cccCCceeeeecchhhhHHHHHHHHcC--------eeEeecccccccCCCCCC---C---
Confidence 99999987764321 122233467899999999998876552 345665655554421110 0
Q ss_pred cccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEe-eCCcccC
Q 018819 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASL-YPGCIAT 310 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v-~PG~v~t 310 (350)
+-++-....+...|+.||.-.+.+.+.+..++ |+..-|+ .||.|..
T Consensus 171 ----------------PTPdltIQRPRTIYGVSKVHAEL~GEy~~hrF----g~dfr~~rfPg~is~ 217 (366)
T KOG2774|consen 171 ----------------PTPDLTIQRPRTIYGVSKVHAELLGEYFNHRF----GVDFRSMRFPGIISA 217 (366)
T ss_pred ----------------CCCCeeeecCceeechhHHHHHHHHHHHHhhc----CccceecccCccccc
Confidence 01111112456789999999888888887776 6776666 4666643
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.1e-05 Score=62.47 Aligned_cols=78 Identities=27% Similarity=0.331 Sum_probs=60.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
++++++++|.|+ ||.|++++..|++.|+.+|.++.|+.++.+++.+.+. +..+.++.. .+.. +.+.
T Consensus 9 ~l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~--~~~~~~~~~--~~~~---~~~~------ 74 (135)
T PF01488_consen 9 DLKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAEEFG--GVNIEAIPL--EDLE---EALQ------ 74 (135)
T ss_dssp TGTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHT--GCSEEEEEG--GGHC---HHHH------
T ss_pred CcCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcC--ccccceeeH--HHHH---HHHh------
Confidence 578999999997 8999999999999999889999999999999888882 223444433 3322 2222
Q ss_pred CCCcEEEEccccC
Q 018819 163 RPLDVLVCNAAVY 175 (350)
Q Consensus 163 g~id~lv~~Ag~~ 175 (350)
..|++|++.+..
T Consensus 75 -~~DivI~aT~~~ 86 (135)
T PF01488_consen 75 -EADIVINATPSG 86 (135)
T ss_dssp -TESEEEE-SSTT
T ss_pred -hCCeEEEecCCC
Confidence 689999998764
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.4e-05 Score=76.29 Aligned_cols=77 Identities=26% Similarity=0.412 Sum_probs=60.6
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCc-EEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 89 VIITGASSGLGLATAKALAETGKW-HIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 89 ~lItGgs~gIG~~ia~~la~~Ga~-~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
|+|.|+ |.+|+.+++.|++++-. +|++.+|+.+++++..+++ .+.++.++++|+.|.+++.++++ ..|+
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~l~~~~~-------~~dv 70 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL--LGDRVEAVQVDVNDPESLAELLR-------GCDV 70 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT----TTTTEEEEE--TTTHHHHHHHHT-------TSSE
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc--cccceeEEEEecCCHHHHHHHHh-------cCCE
Confidence 689999 99999999999999854 8999999998888777654 35689999999999999888876 4699
Q ss_pred EEEccccC
Q 018819 168 LVCNAAVY 175 (350)
Q Consensus 168 lv~~Ag~~ 175 (350)
+||++|..
T Consensus 71 Vin~~gp~ 78 (386)
T PF03435_consen 71 VINCAGPF 78 (386)
T ss_dssp EEE-SSGG
T ss_pred EEECCccc
Confidence 99999864
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.9e-05 Score=71.77 Aligned_cols=161 Identities=11% Similarity=-0.012 Sum_probs=93.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcC-CcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~G-a~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.+.+.|||++|.+|..++..|+.++ +..+++++.+....+ ..++....... ...|+++.+++.+.+ ..
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~--a~Dl~~~~~~~--~i~~~~~~~d~~~~l-------~~ 86 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGV--AADVSHINTPA--QVRGFLGDDQLGDAL-------KG 86 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCee--EchhhhCCcCc--eEEEEeCCCCHHHHc-------CC
Confidence 4589999999999999999999766 357999998762111 11222111111 222433333333332 37
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
.|++|+.||.... + . ..++..+..|+.....+.+.+.++-. . .+|+++|--.....
T Consensus 87 aDiVVitAG~~~~--~--g---~~R~dll~~N~~i~~~i~~~i~~~~p-----~-aivivvSNPvD~~~----------- 142 (323)
T PLN00106 87 ADLVIIPAGVPRK--P--G---MTRDDLFNINAGIVKTLCEAVAKHCP-----N-ALVNIISNPVNSTV----------- 142 (323)
T ss_pred CCEEEEeCCCCCC--C--C---CCHHHHHHHHHHHHHHHHHHHHHHCC-----C-eEEEEeCCCccccH-----------
Confidence 9999999998532 1 2 23567788888887777666554432 2 45555554321000
Q ss_pred cccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhh
Q 018819 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRF 292 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~ 292 (350)
.-+. .......+++....|+.++.-...+-..++.++
T Consensus 143 ~i~t-----------~~~~~~s~~p~~~viG~~~LDs~Rl~~~lA~~l 179 (323)
T PLN00106 143 PIAA-----------EVLKKAGVYDPKKLFGVTTLDVVRANTFVAEKK 179 (323)
T ss_pred HHHH-----------HHHHHcCCCCcceEEEEecchHHHHHHHHHHHh
Confidence 0000 000111235667789988866667777788777
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=6e-05 Score=69.86 Aligned_cols=74 Identities=20% Similarity=0.281 Sum_probs=55.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHc-CCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~-Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
++++++++||||+|.||..+|++|+++ |...+++++|+.+++..+.+++. ..|+. ++.+.
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~---------~~~i~---~l~~~------- 212 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELG---------GGKIL---SLEEA------- 212 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhc---------cccHH---hHHHH-------
Confidence 578999999999999999999999864 66799999999877777665542 12222 22222
Q ss_pred CCCCcEEEEccccC
Q 018819 162 GRPLDVLVCNAAVY 175 (350)
Q Consensus 162 ~g~id~lv~~Ag~~ 175 (350)
+...|++|++++..
T Consensus 213 l~~aDiVv~~ts~~ 226 (340)
T PRK14982 213 LPEADIVVWVASMP 226 (340)
T ss_pred HccCCEEEECCcCC
Confidence 23689999999874
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=8e-05 Score=68.80 Aligned_cols=120 Identities=14% Similarity=-0.024 Sum_probs=74.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcC-CcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~G-a~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
+.+.+.|||++|.||..++..|+.++ +..+++++++....+ ..++...... ....+.+|+.+..+.+ .
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~--a~Dl~~~~~~--~~v~~~td~~~~~~~l-------~ 75 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGV--AADLSHIDTP--AKVTGYADGELWEKAL-------R 75 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCccc--ccchhhcCcC--ceEEEecCCCchHHHh-------C
Confidence 44589999999999999999998665 358999988422211 1122221122 2234555544322222 2
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccC
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~ 228 (350)
..|++|+++|.... + . +.+...+..|+...-.+.+.+.++-. .++|+++|.-
T Consensus 76 gaDvVVitaG~~~~--~--~---~tR~dll~~N~~i~~~i~~~i~~~~~------~~iviv~SNP 127 (321)
T PTZ00325 76 GADLVLICAGVPRK--P--G---MTRDDLFNTNAPIVRDLVAAVASSAP------KAIVGIVSNP 127 (321)
T ss_pred CCCEEEECCCCCCC--C--C---CCHHHHHHHHHHHHHHHHHHHHHHCC------CeEEEEecCc
Confidence 68999999998432 1 1 23566788898877777766554422 2677777754
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=8.8e-05 Score=72.27 Aligned_cols=77 Identities=22% Similarity=0.245 Sum_probs=57.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh-hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~-~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
++++|+++|+|+++ +|.++|+.|+++|+ .|.+.+++. +..++..+++...+ +.++.+|..+. .
T Consensus 2 ~~~~k~v~iiG~g~-~G~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~------------~ 65 (450)
T PRK14106 2 ELKGKKVLVVGAGV-SGLALAKFLKKLGA-KVILTDEKEEDQLKEALEELGELG--IELVLGEYPEE------------F 65 (450)
T ss_pred CcCCCEEEEECCCH-HHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcC--CEEEeCCcchh------------H
Confidence 46789999999877 99999999999995 899998874 44444445554333 55777888761 1
Q ss_pred CCCCcEEEEccccC
Q 018819 162 GRPLDVLVCNAAVY 175 (350)
Q Consensus 162 ~g~id~lv~~Ag~~ 175 (350)
.+.+|+||+++|+.
T Consensus 66 ~~~~d~vv~~~g~~ 79 (450)
T PRK14106 66 LEGVDLVVVSPGVP 79 (450)
T ss_pred hhcCCEEEECCCCC
Confidence 24789999999974
|
|
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.4e-05 Score=67.83 Aligned_cols=82 Identities=16% Similarity=0.225 Sum_probs=48.9
Q ss_pred cCCCEEEEEcCC----------------CchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCC
Q 018819 84 LRKGSVIITGAS----------------SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 147 (350)
Q Consensus 84 l~~~~~lItGgs----------------~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~ 147 (350)
|.||.+|||+|. |-||.++|++|.++|+ .|+++++....... .+. .+..+..+..|.
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga-~V~li~g~~~~~~~---~~~-~~~~~~~V~s~~-- 73 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGA-HVIYLHGYFAEKPN---DIN-NQLELHPFEGII-- 73 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCC-eEEEEeCCCcCCCc---ccC-CceeEEEEecHH--
Confidence 368889999885 8999999999999996 77776653211000 000 112233343322
Q ss_pred HHHHHHHHHHHHHcCCCCcEEEEccccC
Q 018819 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVY 175 (350)
Q Consensus 148 ~~~v~~~~~~~~~~~g~id~lv~~Ag~~ 175 (350)
++...+.++.+. ..+|++||+|++.
T Consensus 74 --d~~~~l~~~~~~-~~~D~VIH~AAvs 98 (229)
T PRK09620 74 --DLQDKMKSIITH-EKVDAVIMAAAGS 98 (229)
T ss_pred --HHHHHHHHHhcc-cCCCEEEECcccc
Confidence 222233333221 2589999999985
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0012 Score=54.95 Aligned_cols=72 Identities=21% Similarity=0.231 Sum_probs=60.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
.+-|.|++|-.|..++++..++| +.|..+.|+..+.... ..+..++.|+.|++++.+.+. +.|.
T Consensus 2 KIaiIgAsG~~Gs~i~~EA~~RG-HeVTAivRn~~K~~~~--------~~~~i~q~Difd~~~~a~~l~-------g~Da 65 (211)
T COG2910 2 KIAIIGASGKAGSRILKEALKRG-HEVTAIVRNASKLAAR--------QGVTILQKDIFDLTSLASDLA-------GHDA 65 (211)
T ss_pred eEEEEecCchhHHHHHHHHHhCC-CeeEEEEeChHhcccc--------ccceeecccccChhhhHhhhc-------CCce
Confidence 47889999999999999999999 6999999998765432 246788999999998866554 7899
Q ss_pred EEEccccC
Q 018819 168 LVCNAAVY 175 (350)
Q Consensus 168 lv~~Ag~~ 175 (350)
||..-|..
T Consensus 66 VIsA~~~~ 73 (211)
T COG2910 66 VISAFGAG 73 (211)
T ss_pred EEEeccCC
Confidence 99888764
|
|
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00043 Score=57.14 Aligned_cols=158 Identities=18% Similarity=0.150 Sum_probs=95.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcC-CcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~G-a~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
.++++..+|.||+|-.|..+.+++++.+ ..+|+++.|......+ .+..+.....|.+..++....
T Consensus 15 ~mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~a-------t~k~v~q~~vDf~Kl~~~a~~------- 80 (238)
T KOG4039|consen 15 RMQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPA-------TDKVVAQVEVDFSKLSQLATN------- 80 (238)
T ss_pred hhhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCcc-------ccceeeeEEechHHHHHHHhh-------
Confidence 4577889999999999999999999988 3478877776322111 233455666777665544332
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
...+|+++++-|..+...- .+. .+.+.-.-.+.+.+++ ++.+ ...|+.+||..+.-
T Consensus 81 ~qg~dV~FcaLgTTRgkaG-----adg---fykvDhDyvl~~A~~A----Ke~G--ck~fvLvSS~GAd~---------- 136 (238)
T KOG4039|consen 81 EQGPDVLFCALGTTRGKAG-----ADG---FYKVDHDYVLQLAQAA----KEKG--CKTFVLVSSAGADP---------- 136 (238)
T ss_pred hcCCceEEEeecccccccc-----cCc---eEeechHHHHHHHHHH----HhCC--CeEEEEEeccCCCc----------
Confidence 2379999999887643211 111 1111111112222222 2222 34899999986652
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
.....|--.|.-++.=+..|-- =++..+.||++..+.
T Consensus 137 ---------------------------sSrFlY~k~KGEvE~~v~eL~F-------~~~~i~RPG~ll~~R 173 (238)
T KOG4039|consen 137 ---------------------------SSRFLYMKMKGEVERDVIELDF-------KHIIILRPGPLLGER 173 (238)
T ss_pred ---------------------------ccceeeeeccchhhhhhhhccc-------cEEEEecCcceeccc
Confidence 2445677777766554432221 267888999997653
|
|
| >KOG2733 consensus Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00029 Score=64.32 Aligned_cols=81 Identities=22% Similarity=0.238 Sum_probs=68.0
Q ss_pred EEEEEcCCCchHHHHHHHHHH----cCCcEEEEEecChhHHHHHHHHhccCC----CceEEEEccCCCHHHHHHHHHHHH
Q 018819 88 SVIITGASSGLGLATAKALAE----TGKWHIIMACRDFLKAERAAKSAGMAK----ENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~----~Ga~~Vi~~~r~~~~~~~~~~~l~~~~----~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
-++|-||+|.-|.-+++++.. .| ..+.+.+|+++++++..+++.+.. ....++.||.+|++++.+++.+
T Consensus 7 DvVIyGASGfTG~yivee~v~~~~~~~-~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak~-- 83 (423)
T KOG2733|consen 7 DVVIYGASGFTGKYIVEEAVSSQVFEG-LSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAKQ-- 83 (423)
T ss_pred eEEEEccccccceeeHHHHhhhhcccC-ceEEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHhh--
Confidence 479999999999999999998 77 589999999999999888875443 1233888999999999999885
Q ss_pred HcCCCCcEEEEccccCC
Q 018819 160 RSGRPLDVLVCNAAVYL 176 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~ 176 (350)
-.+||||+|..+
T Consensus 84 -----~~vivN~vGPyR 95 (423)
T KOG2733|consen 84 -----ARVIVNCVGPYR 95 (423)
T ss_pred -----hEEEEeccccce
Confidence 468999999754
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00055 Score=56.28 Aligned_cols=76 Identities=29% Similarity=0.355 Sum_probs=55.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
+++++++|+|+ |++|..+++.|.+.|...|++++|+.++.++..+++.... +..+.++.++. ..
T Consensus 17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~~~----------~~ 80 (155)
T cd01065 17 LKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG-----IAIAYLDLEEL----------LA 80 (155)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc-----cceeecchhhc----------cc
Confidence 35678999998 8999999999999964589999999888777766654211 22344444332 24
Q ss_pred CCcEEEEccccC
Q 018819 164 PLDVLVCNAAVY 175 (350)
Q Consensus 164 ~id~lv~~Ag~~ 175 (350)
..|++|++....
T Consensus 81 ~~Dvvi~~~~~~ 92 (155)
T cd01065 81 EADLIINTTPVG 92 (155)
T ss_pred cCCEEEeCcCCC
Confidence 789999998764
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00043 Score=64.28 Aligned_cols=118 Identities=11% Similarity=0.044 Sum_probs=65.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC------cEEEEEecChhH--HHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHH
Q 018819 88 SVIITGASSGLGLATAKALAETGK------WHIIMACRDFLK--AERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga------~~Vi~~~r~~~~--~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
.++|||++|.+|..++..|+..+. ..|++++++... ++....++.. . ......|+....++.+
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d--~-~~~~~~~~~~~~~~~~------ 74 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQD--C-AFPLLKSVVATTDPEE------ 74 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhh--c-cccccCCceecCCHHH------
Confidence 589999999999999999998552 279999886421 1111001100 0 0011123332222222
Q ss_pred HcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEec
Q 018819 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS 226 (350)
.+...|+|||+||..... ..+. ...++.|+. +.+.+.+.+.+...+.+.+|++|.
T Consensus 75 -~l~~aDiVI~tAG~~~~~----~~~R---~~l~~~N~~----i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 75 -AFKDVDVAILVGAMPRKE----GMER---KDLLKANVK----IFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred -HhCCCCEEEEeCCcCCCC----CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCCeEEEEecC
Confidence 223799999999985321 2233 345566654 344444545444222457777765
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00092 Score=60.80 Aligned_cols=77 Identities=25% Similarity=0.306 Sum_probs=55.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+.+++++|+|+ ||+|++++..|+..|+.+|++++|+.++.+++.+.+.... .+. .++ +.. +..
T Consensus 120 ~~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~-~~~---~~~----~~~-------~~~ 183 (278)
T PRK00258 120 DLKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALG-KAE---LDL----ELQ-------EEL 183 (278)
T ss_pred CCCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc-cee---ecc----cch-------hcc
Confidence 467889999997 8999999999999996699999999888888777664221 111 111 111 112
Q ss_pred CCCcEEEEccccC
Q 018819 163 RPLDVLVCNAAVY 175 (350)
Q Consensus 163 g~id~lv~~Ag~~ 175 (350)
...|+|||+....
T Consensus 184 ~~~DivInaTp~g 196 (278)
T PRK00258 184 ADFDLIINATSAG 196 (278)
T ss_pred ccCCEEEECCcCC
Confidence 3689999998663
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0019 Score=58.50 Aligned_cols=75 Identities=24% Similarity=0.270 Sum_probs=54.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
.++++++|+|+ ||+|++++..|++.|+ .|.+++|+.++.+++.+.+...+. +.....| +. ...
T Consensus 115 ~~~k~vliiGa-Gg~g~aia~~L~~~g~-~v~v~~R~~~~~~~la~~~~~~~~-~~~~~~~-----~~---------~~~ 177 (270)
T TIGR00507 115 RPNQRVLIIGA-GGAARAVALPLLKADC-NVIIANRTVSKAEELAERFQRYGE-IQAFSMD-----EL---------PLH 177 (270)
T ss_pred ccCCEEEEEcC-cHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhcCc-eEEechh-----hh---------ccc
Confidence 45789999998 6999999999999995 999999998888887777654331 2222111 10 123
Q ss_pred CCcEEEEccccC
Q 018819 164 PLDVLVCNAAVY 175 (350)
Q Consensus 164 ~id~lv~~Ag~~ 175 (350)
..|+|||+.+..
T Consensus 178 ~~DivInatp~g 189 (270)
T TIGR00507 178 RVDLIINATSAG 189 (270)
T ss_pred CccEEEECCCCC
Confidence 689999999874
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0082 Score=55.53 Aligned_cols=80 Identities=28% Similarity=0.316 Sum_probs=56.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.+++++|+|+++++|.++++.+...|+ +|+++.++.++.+.+ ..+ +.. ...|..+.+..+.+.+... .++
T Consensus 166 ~~~~vlI~g~~~~iG~~~~~~~~~~g~-~v~~~~~~~~~~~~~-~~~---~~~---~~~~~~~~~~~~~~~~~~~--~~~ 235 (342)
T cd08266 166 PGETVLVHGAGSGVGSAAIQIAKLFGA-TVIATAGSEDKLERA-KEL---GAD---YVIDYRKEDFVREVRELTG--KRG 235 (342)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH-HHc---CCC---eEEecCChHHHHHHHHHhC--CCC
Confidence 578999999999999999999999996 788888887665544 222 222 1246666665555544332 236
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++++++|.
T Consensus 236 ~d~~i~~~g~ 245 (342)
T cd08266 236 VDVVVEHVGA 245 (342)
T ss_pred CcEEEECCcH
Confidence 9999999873
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0007 Score=65.93 Aligned_cols=79 Identities=16% Similarity=0.204 Sum_probs=52.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
++++|+++|||+++ +|.++|+.|++.|+ .|++.+++........+.+...|. .+...+ +..++ .+
T Consensus 2 ~~~~k~v~v~G~g~-~G~s~a~~l~~~G~-~V~~~d~~~~~~~~~~~~l~~~g~--~~~~~~--~~~~~---~~------ 66 (447)
T PRK02472 2 EYQNKKVLVLGLAK-SGYAAAKLLHKLGA-NVTVNDGKPFSENPEAQELLEEGI--KVICGS--HPLEL---LD------ 66 (447)
T ss_pred CcCCCEEEEEeeCH-HHHHHHHHHHHCCC-EEEEEcCCCccchhHHHHHHhcCC--EEEeCC--CCHHH---hc------
Confidence 46789999999975 99999999999996 888888765333333344443333 232222 11111 11
Q ss_pred CCCcEEEEccccCC
Q 018819 163 RPLDVLVCNAAVYL 176 (350)
Q Consensus 163 g~id~lv~~Ag~~~ 176 (350)
..+|.||+++|+..
T Consensus 67 ~~~d~vV~s~gi~~ 80 (447)
T PRK02472 67 EDFDLMVKNPGIPY 80 (447)
T ss_pred CcCCEEEECCCCCC
Confidence 14899999999853
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0019 Score=61.94 Aligned_cols=76 Identities=18% Similarity=0.286 Sum_probs=57.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+.+++++|.|+ ||+|+.+++.|++.|+..|++++|+.++.+.+.+++.. ..+ ...+++...+
T Consensus 178 ~l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~----~~~-----~~~~~l~~~l------- 240 (414)
T PRK13940 178 NISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRN----ASA-----HYLSELPQLI------- 240 (414)
T ss_pred CccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcC----CeE-----ecHHHHHHHh-------
Confidence 578899999998 99999999999999987999999998888877776531 111 1223333222
Q ss_pred CCCcEEEEccccC
Q 018819 163 RPLDVLVCNAAVY 175 (350)
Q Consensus 163 g~id~lv~~Ag~~ 175 (350)
...|+||++.+..
T Consensus 241 ~~aDiVI~aT~a~ 253 (414)
T PRK13940 241 KKADIIIAAVNVL 253 (414)
T ss_pred ccCCEEEECcCCC
Confidence 3689999998864
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0016 Score=58.91 Aligned_cols=79 Identities=30% Similarity=0.306 Sum_probs=59.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
+.+++.++|.|+ ||-+++++..|++.|+.+|.++.|+.++.+++.+.+...+..+. ..+..+.+..+
T Consensus 123 ~~~~~~vlilGA-GGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~--~~~~~~~~~~~---------- 189 (283)
T COG0169 123 DVTGKRVLILGA-GGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVE--AAALADLEGLE---------- 189 (283)
T ss_pred ccCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccc--ccccccccccc----------
Confidence 446889999997 79999999999999988999999999999999888875544221 12332222211
Q ss_pred CCCcEEEEccccC
Q 018819 163 RPLDVLVCNAAVY 175 (350)
Q Consensus 163 g~id~lv~~Ag~~ 175 (350)
..|++||+..+.
T Consensus 190 -~~dliINaTp~G 201 (283)
T COG0169 190 -EADLLINATPVG 201 (283)
T ss_pred -ccCEEEECCCCC
Confidence 479999997664
|
|
| >cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR) | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0078 Score=55.13 Aligned_cols=80 Identities=19% Similarity=0.249 Sum_probs=55.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
++++++|+|+++++|.++++.+...|+ .|+++.++.+..+.+ ..+ +.+. .+|..+.+..+.+.+.. . ..+
T Consensus 144 ~g~~vlI~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~-~~~---g~~~---~~~~~~~~~~~~~~~~~-~-~~~ 213 (325)
T cd08253 144 AGETVLVHGGSGAVGHAAVQLARWAGA-RVIATASSAEGAELV-RQA---GADA---VFNYRAEDLADRILAAT-A-GQG 213 (325)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH-HHc---CCCE---EEeCCCcCHHHHHHHHc-C-CCc
Confidence 578999999999999999999999995 888888887665544 223 2221 24555544444433322 1 236
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|.+++++|.
T Consensus 214 ~d~vi~~~~~ 223 (325)
T cd08253 214 VDVIIEVLAN 223 (325)
T ss_pred eEEEEECCch
Confidence 9999999863
|
Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts |
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0017 Score=64.35 Aligned_cols=47 Identities=28% Similarity=0.433 Sum_probs=41.4
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHh
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA 131 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l 131 (350)
.+++|+++|+|+ ||+|++++..|++.|+ +|++++|+.++.+++.+.+
T Consensus 376 ~~~~k~vlIlGa-GGagrAia~~L~~~G~-~V~i~nR~~e~a~~la~~l 422 (529)
T PLN02520 376 PLAGKLFVVIGA-GGAGKALAYGAKEKGA-RVVIANRTYERAKELADAV 422 (529)
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHh
Confidence 467899999999 6999999999999997 9999999988887776665
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0026 Score=57.96 Aligned_cols=79 Identities=22% Similarity=0.116 Sum_probs=56.0
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
+++++++|.|+ ||.|++++..|++.|+.+|.++.|+.++.+++.+.+.... .+ .. +...+++.. ...
T Consensus 123 ~~~k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~-~~--~~--~~~~~~~~~-------~~~ 189 (282)
T TIGR01809 123 LAGFRGLVIGA-GGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVG-VI--TR--LEGDSGGLA-------IEK 189 (282)
T ss_pred cCCceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcC-cc--ee--ccchhhhhh-------ccc
Confidence 57889999986 8999999999999998899999999988888877664221 11 11 111122211 123
Q ss_pred CCcEEEEccccC
Q 018819 164 PLDVLVCNAAVY 175 (350)
Q Consensus 164 ~id~lv~~Ag~~ 175 (350)
..|+|||+..+.
T Consensus 190 ~~DiVInaTp~g 201 (282)
T TIGR01809 190 AAEVLVSTVPAD 201 (282)
T ss_pred CCCEEEECCCCC
Confidence 689999998763
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0055 Score=55.87 Aligned_cols=50 Identities=26% Similarity=0.210 Sum_probs=43.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhcc
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM 133 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~ 133 (350)
.+++++++|.|+ ||.|++++..|++.|+.+|++++|+.++.+.+.+.+..
T Consensus 124 ~~~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~ 173 (284)
T PRK12549 124 DASLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNA 173 (284)
T ss_pred CccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHh
Confidence 356789999997 78999999999999988999999999988888877743
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.005 Score=56.02 Aligned_cols=48 Identities=31% Similarity=0.319 Sum_probs=42.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhc
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG 132 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~ 132 (350)
+++|+++|.|+ ||-+++++..|++.|+.+|++++|+.++.+++.+.+.
T Consensus 125 ~~~k~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~ 172 (283)
T PRK14027 125 AKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVIN 172 (283)
T ss_pred cCCCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHh
Confidence 56789999997 8999999999999998899999999988888877764
|
|
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0028 Score=53.81 Aligned_cols=77 Identities=21% Similarity=0.268 Sum_probs=44.4
Q ss_pred cCCCEEEEEcC----------------CCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCC
Q 018819 84 LRKGSVIITGA----------------SSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 147 (350)
Q Consensus 84 l~~~~~lItGg----------------s~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~ 147 (350)
|+||.+|||+| ||-.|.++|+.+..+|| .|+++..... ... ...+.. .++.+
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga-~V~li~g~~~-~~~--------p~~~~~--i~v~s 68 (185)
T PF04127_consen 1 LKGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGA-EVTLIHGPSS-LPP--------PPGVKV--IRVES 68 (185)
T ss_dssp -TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT--EEEEEE-TTS-------------TTEEE--EE-SS
T ss_pred CCCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCC-EEEEEecCcc-ccc--------cccceE--EEecc
Confidence 35666666665 67899999999999997 6777665531 110 123433 45666
Q ss_pred HHHHHHHHHHHHHcCCCCcEEEEccccC
Q 018819 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVY 175 (350)
Q Consensus 148 ~~~v~~~~~~~~~~~g~id~lv~~Ag~~ 175 (350)
.+++.+.+.+. +..-|++|++|++.
T Consensus 69 a~em~~~~~~~---~~~~Di~I~aAAVs 93 (185)
T PF04127_consen 69 AEEMLEAVKEL---LPSADIIIMAAAVS 93 (185)
T ss_dssp HHHHHHHHHHH---GGGGSEEEE-SB--
T ss_pred hhhhhhhhccc---cCcceeEEEecchh
Confidence 66666555544 34459999999985
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0047 Score=57.33 Aligned_cols=115 Identities=14% Similarity=0.036 Sum_probs=67.3
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCc------EEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHH--HHH--HHH
Q 018819 89 VIITGASSGLGLATAKALAETGKW------HIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVR--QFV--DTF 158 (350)
Q Consensus 89 ~lItGgs~gIG~~ia~~la~~Ga~------~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~--~~~--~~~ 158 (350)
+.|+|++|.+|..++..|+..|.. .+++.++++... .......|+.|..... ... ...
T Consensus 2 V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~------------~a~g~~~Dl~d~~~~~~~~~~~~~~~ 69 (324)
T TIGR01758 2 VVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMK------------VLEGVVMELMDCAFPLLDGVVPTHDP 69 (324)
T ss_pred EEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCccc------------ccceeEeehhcccchhcCceeccCCh
Confidence 789999999999999999987632 488888864320 1223345555544111 000 011
Q ss_pred HHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEec
Q 018819 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (350)
Q Consensus 159 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS 226 (350)
.+.+...|++|+.||.... . . +++...+..|+. +.+.+.+.+.+...+.+.+|++|-
T Consensus 70 ~~~~~~aDiVVitAG~~~~--~--~---~tr~~ll~~N~~----i~k~i~~~i~~~~~~~~iiivvsN 126 (324)
T TIGR01758 70 AVAFTDVDVAILVGAFPRK--E--G---MERRDLLSKNVK----IFKEQGRALDKLAKKDCKVLVVGN 126 (324)
T ss_pred HHHhCCCCEEEEcCCCCCC--C--C---CcHHHHHHHHHH----HHHHHHHHHHhhCCCCeEEEEeCC
Confidence 2233579999999998432 1 1 234566676754 445555555544212456777664
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0058 Score=56.74 Aligned_cols=115 Identities=14% Similarity=0.118 Sum_probs=65.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCc------EEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHH--H--HHHHH
Q 018819 88 SVIITGASSGLGLATAKALAETGKW------HIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSV--R--QFVDT 157 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~------~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v--~--~~~~~ 157 (350)
.+.|||++|.+|..++..|+..|.. .+++.+++... + .......|+.|.... . .+...
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~-~-----------~~~g~~~Dl~d~~~~~~~~~~i~~~ 69 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAM-K-----------ALEGVVMELQDCAFPLLKGVVITTD 69 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCcc-C-----------ccceeeeehhhhcccccCCcEEecC
Confidence 4799999999999999999987632 48888887520 0 122334444443100 0 00011
Q ss_pred HHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEe
Q 018819 158 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVG 225 (350)
Q Consensus 158 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vS 225 (350)
..+.+...|++|+.||.... + ..+.. ..+..|+ .+.+.+.+.+.+...+.+.+|++|
T Consensus 70 ~~~~~~~aDiVVitAG~~~~--~--g~tR~---dll~~N~----~i~~~i~~~i~~~~~~~~iiivvs 126 (323)
T cd00704 70 PEEAFKDVDVAILVGAFPRK--P--GMERA---DLLRKNA----KIFKEQGEALNKVAKPTVKVLVVG 126 (323)
T ss_pred hHHHhCCCCEEEEeCCCCCC--c--CCcHH---HHHHHhH----HHHHHHHHHHHHhCCCCeEEEEeC
Confidence 12233479999999998532 2 23433 3455554 455556666655421245666665
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0019 Score=55.73 Aligned_cols=47 Identities=28% Similarity=0.320 Sum_probs=39.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHh
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA 131 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l 131 (350)
+++||+++|+|.+ .+|+.+|+.|.+.|+ +|++.+++.+..++..+.+
T Consensus 25 ~l~gk~v~I~G~G-~vG~~~A~~L~~~G~-~Vvv~D~~~~~~~~~~~~~ 71 (200)
T cd01075 25 SLEGKTVAVQGLG-KVGYKLAEHLLEEGA-KLIVADINEEAVARAAELF 71 (200)
T ss_pred CCCCCEEEEECCC-HHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHc
Confidence 5689999999984 899999999999996 8889999877766665543
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.01 Score=56.31 Aligned_cols=75 Identities=29% Similarity=0.430 Sum_probs=58.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
+++++++||.|+ |-+|.-+|++|+++|...|+++.|+.++.+++.+++. .++...+++...+.
T Consensus 175 ~L~~~~vlvIGA-Gem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~----------~~~~~l~el~~~l~------ 237 (414)
T COG0373 175 SLKDKKVLVIGA-GEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG----------AEAVALEELLEALA------ 237 (414)
T ss_pred ccccCeEEEEcc-cHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhC----------CeeecHHHHHHhhh------
Confidence 478999999997 6899999999999998899999999999999888775 22222333333333
Q ss_pred CCCcEEEEccccC
Q 018819 163 RPLDVLVCNAAVY 175 (350)
Q Consensus 163 g~id~lv~~Ag~~ 175 (350)
..|++|.+.|..
T Consensus 238 -~~DvVissTsa~ 249 (414)
T COG0373 238 -EADVVISSTSAP 249 (414)
T ss_pred -hCCEEEEecCCC
Confidence 578888887754
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0089 Score=55.87 Aligned_cols=82 Identities=26% Similarity=0.402 Sum_probs=56.4
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh---------------------hHHHHHHHHhcc--CCCce
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF---------------------LKAERAAKSAGM--AKENY 138 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~---------------------~~~~~~~~~l~~--~~~~v 138 (350)
..+++++|+|.|+ ||+|..+|+.|+..|..++.+++++. .+.+.+.+.+.. ...++
T Consensus 20 ~~L~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i 98 (338)
T PRK12475 20 RKIREKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEI 98 (338)
T ss_pred HhhcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEE
Confidence 3567889999997 78999999999999987999988863 233334444433 34456
Q ss_pred EEEEccCCCHHHHHHHHHHHHHcCCCCcEEEEcc
Q 018819 139 TIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNA 172 (350)
Q Consensus 139 ~~~~~Dvs~~~~v~~~~~~~~~~~g~id~lv~~A 172 (350)
..+..|++. +.++++++ ..|++|.+.
T Consensus 99 ~~~~~~~~~-~~~~~~~~-------~~DlVid~~ 124 (338)
T PRK12475 99 VPVVTDVTV-EELEELVK-------EVDLIIDAT 124 (338)
T ss_pred EEEeccCCH-HHHHHHhc-------CCCEEEEcC
Confidence 667777763 34444432 578877664
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0072 Score=55.89 Aligned_cols=104 Identities=15% Similarity=0.001 Sum_probs=56.3
Q ss_pred EEEEEcCCCchHHHHHHHHHH-cC-CcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 88 SVIITGASSGLGLATAKALAE-TG-KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~-~G-a~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
.++|.||+|++|.+++..|.. .+ +..+++.++++. .+.....+...+.......++-.| +.+. ....
T Consensus 2 KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~g~alDl~~~~~~~~i~~~~~~d---~~~~-------l~~~ 70 (312)
T PRK05086 2 KVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TPGVAVDLSHIPTAVKIKGFSGED---PTPA-------LEGA 70 (312)
T ss_pred EEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-CcceehhhhcCCCCceEEEeCCCC---HHHH-------cCCC
Confidence 689999999999999998865 23 247788887643 111111222111111111112222 1111 1359
Q ss_pred cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHH
Q 018819 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLD 209 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~ 209 (350)
|++|.++|..... ..+. ...+..|....-.+.+.+.+
T Consensus 71 DiVIitaG~~~~~----~~~R---~dll~~N~~i~~~ii~~i~~ 107 (312)
T PRK05086 71 DVVLISAGVARKP----GMDR---SDLFNVNAGIVKNLVEKVAK 107 (312)
T ss_pred CEEEEcCCCCCCC----CCCH---HHHHHHHHHHHHHHHHHHHH
Confidence 9999999985431 2232 34566676555555554433
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.012 Score=50.76 Aligned_cols=38 Identities=37% Similarity=0.482 Sum_probs=33.4
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
..+.+++++|.|+ ||+|..+++.|+..|..++.+++.+
T Consensus 17 ~kl~~~~VlviG~-GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGA-GGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEecCC
Confidence 3567889999985 8999999999999998899999876
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.03 Score=64.92 Aligned_cols=184 Identities=11% Similarity=0.098 Sum_probs=106.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
+.++.++|++..++++.+++..|.++|. .|+++.... .. ..........+..+.+.-.|.+++..+++.+....+
T Consensus 1753 ~~~~~~~v~~d~~~~~~~L~~~L~~~G~-~v~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1827 (2582)
T TIGR02813 1753 QSGANALVIDDDGHNAGVLAEKLIAAGW-QVAVVRSPW-VV---SHSASPLASAIASVTLGTIDDTSIEAVIKDIEEKTA 1827 (2582)
T ss_pred ccCceeEEEcCCcchHHHHHHHHHhCCC-eEEEeeccc-cc---cccccccccccccccccccchHHHHHHHHhhhcccc
Confidence 4577888888889999999999999995 776653221 10 001011112233344555566778888888877778
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCC
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (350)
.++++||....... .....+...+...-...+...|.+.|.+.+.+...+ .+.++.++...|-.|.....
T Consensus 1828 ~~~g~i~l~~~~~~--~~~~~~~~~~~~~~~~~l~~~f~~ak~~~~~l~~~~--~~~~~~vsr~~G~~g~~~~~------ 1897 (2582)
T TIGR02813 1828 QIDGFIHLQPQHKS--VADKVDAIELPEAAKQSLMLAFLFAKLLNVKLATNA--RASFVTVSRIDGGFGYSNGD------ 1897 (2582)
T ss_pred ccceEEEecccccc--ccccccccccchhhHHHHHHHHHHHHhhchhhccCC--CeEEEEEEecCCccccCCcc------
Confidence 99999998775421 000000001111111334456777777766554432 46899999888766531100
Q ss_pred ccccccccccCCCCCCCcccCCCCCCch--hchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCC
Q 018819 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGA--KAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPG 306 (350)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG 306 (350)
...+. ..-....+++.+|+|++++|| ...-+|...+.|.
T Consensus 1898 -----------------------~~~~~~~~~~~~~~a~l~Gl~Ktl~~E~-P~~~~r~vDl~~~ 1938 (2582)
T TIGR02813 1898 -----------------------ADSGTQQVKAELNQAALAGLTKTLNHEW-NAVFCRALDLAPK 1938 (2582)
T ss_pred -----------------------ccccccccccchhhhhHHHHHHhHHHHC-CCCeEEEEeCCCC
Confidence 00000 000224578899999999998 3334455555554
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.011 Score=53.99 Aligned_cols=49 Identities=22% Similarity=0.164 Sum_probs=40.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh---hHHHHHHHHhc
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF---LKAERAAKSAG 132 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~---~~~~~~~~~l~ 132 (350)
.+++|+++|.|+ ||-+++++..|+..|+.+|.+++|+. ++.+++.+.+.
T Consensus 121 ~~~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~ 172 (288)
T PRK12749 121 DIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVN 172 (288)
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhh
Confidence 457889999997 67799999999999988999999984 46666666553
|
|
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0049 Score=56.00 Aligned_cols=76 Identities=22% Similarity=0.268 Sum_probs=61.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
.++|-||+|--|.-+|++|+.+| .+..+.+|+..++..+...+. .+...+.|++ ++.++++++ ..++
T Consensus 8 d~iiYGAtGy~G~lvae~l~~~g-~~~aLAgRs~~kl~~l~~~LG---~~~~~~p~~~--p~~~~~~~~-------~~~V 74 (382)
T COG3268 8 DIIIYGATGYAGGLVAEYLAREG-LTAALAGRSSAKLDALRASLG---PEAAVFPLGV--PAALEAMAS-------RTQV 74 (382)
T ss_pred eEEEEccccchhHHHHHHHHHcC-CchhhccCCHHHHHHHHHhcC---ccccccCCCC--HHHHHHHHh-------cceE
Confidence 68999999999999999999999 588999999999998888774 4455555555 666666555 6899
Q ss_pred EEEccccCC
Q 018819 168 LVCNAAVYL 176 (350)
Q Consensus 168 lv~~Ag~~~ 176 (350)
|+||+|.+.
T Consensus 75 VlncvGPyt 83 (382)
T COG3268 75 VLNCVGPYT 83 (382)
T ss_pred EEecccccc
Confidence 999999753
|
|
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.015 Score=55.51 Aligned_cols=83 Identities=19% Similarity=0.222 Sum_probs=52.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+.++|||||++.++|+.+++.|.+.| .+|++++.+..........+. ....+...-.|.+...+.+.++.++. +
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G-~~Vi~~d~~~~~~~~~s~~~d----~~~~~p~p~~d~~~~~~~L~~i~~~~-~ 76 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAG-HTVILADSLKYPLSRFSRAVD----GFYTIPSPRWDPDAYIQALLSIVQRE-N 76 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCchHHHHHHHhhh----heEEeCCCCCCHHHHHHHHHHHHHHc-C
Confidence 34799999999999999999999999 589888887544322222121 12222222334444444444444443 5
Q ss_pred CcEEEEccc
Q 018819 165 LDVLVCNAA 173 (350)
Q Consensus 165 id~lv~~Ag 173 (350)
+|+||-...
T Consensus 77 id~vIP~~e 85 (389)
T PRK06849 77 IDLLIPTCE 85 (389)
T ss_pred CCEEEECCh
Confidence 899987664
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.024 Score=53.69 Aligned_cols=77 Identities=17% Similarity=0.243 Sum_probs=55.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
+.++.++|.|+ |.+|+..++.+...|+ +|++++|+.++.+.+...+. .. +..+..+.+.+.+.+.
T Consensus 165 l~~~~VlViGa-G~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g---~~---v~~~~~~~~~l~~~l~------- 229 (370)
T TIGR00518 165 VEPGDVTIIGG-GVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFG---GR---IHTRYSNAYEIEDAVK------- 229 (370)
T ss_pred CCCceEEEEcC-CHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcC---ce---eEeccCCHHHHHHHHc-------
Confidence 45667899987 7999999999999997 79999998777665544432 11 2345556665544433
Q ss_pred CCcEEEEccccC
Q 018819 164 PLDVLVCNAAVY 175 (350)
Q Consensus 164 ~id~lv~~Ag~~ 175 (350)
..|++|+++++.
T Consensus 230 ~aDvVI~a~~~~ 241 (370)
T TIGR00518 230 RADLLIGAVLIP 241 (370)
T ss_pred cCCEEEEccccC
Confidence 579999998763
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.038 Score=44.79 Aligned_cols=112 Identities=21% Similarity=0.185 Sum_probs=68.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHcC-CcEEEEEecChhHHHHHHHHhccC----CCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 88 SVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMA----KENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~G-a~~Vi~~~r~~~~~~~~~~~l~~~----~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+.|+|++|.+|..+|..|...+ +..+++++++++..+....++... ........ .+.++ .
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~---~~~~~-----------~ 67 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS---GDYEA-----------L 67 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE---SSGGG-----------G
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccc---ccccc-----------c
Confidence 57899999999999999999987 357999999977666555555321 12233333 22222 2
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEe
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVG 225 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vS 225 (350)
..-|++|..||.... + ..+. ...+..|..-. +.+.+.+.+.. +.+.++.+|
T Consensus 68 ~~aDivvitag~~~~--~--g~sR---~~ll~~N~~i~----~~~~~~i~~~~-p~~~vivvt 118 (141)
T PF00056_consen 68 KDADIVVITAGVPRK--P--GMSR---LDLLEANAKIV----KEIAKKIAKYA-PDAIVIVVT 118 (141)
T ss_dssp TTESEEEETTSTSSS--T--TSSH---HHHHHHHHHHH----HHHHHHHHHHS-TTSEEEE-S
T ss_pred ccccEEEEecccccc--c--cccH---HHHHHHhHhHH----HHHHHHHHHhC-CccEEEEeC
Confidence 368999999998532 1 2333 33455665444 44444444333 246677665
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.022 Score=52.87 Aligned_cols=153 Identities=10% Similarity=0.008 Sum_probs=88.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC-c-----EEEEEecChhH--HHHHHHHhccCC----CceEEEEccCCCHHHHHHHH
Q 018819 88 SVIITGASSGLGLATAKALAETGK-W-----HIIMACRDFLK--AERAAKSAGMAK----ENYTIMHLDLASLDSVRQFV 155 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga-~-----~Vi~~~r~~~~--~~~~~~~l~~~~----~~v~~~~~Dvs~~~~v~~~~ 155 (350)
.+.|+|++|.+|..+|..|+..|- . .+++.+.++.. ++....++.... .++.+. -.+.+
T Consensus 4 KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~---~~~~~------ 74 (322)
T cd01338 4 RVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT---DDPNV------ 74 (322)
T ss_pred EEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe---cCcHH------
Confidence 689999999999999999998873 3 68888885322 222222222110 111111 11111
Q ss_pred HHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCC
Q 018819 156 DTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLA 235 (350)
Q Consensus 156 ~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~ 235 (350)
....-|++|.+||.... + .++..+ .+..|+ -+.+.+.+.+.+...+.+.+|++|-..-....
T Consensus 75 -----~~~daDivvitaG~~~k--~--g~tR~d---ll~~N~----~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~-- 136 (322)
T cd01338 75 -----AFKDADWALLVGAKPRG--P--GMERAD---LLKANG----KIFTAQGKALNDVASRDVKVLVVGNPCNTNAL-- 136 (322)
T ss_pred -----HhCCCCEEEEeCCCCCC--C--CCcHHH---HHHHHH----HHHHHHHHHHHhhCCCCeEEEEecCcHHHHHH--
Confidence 12368999999998532 2 234333 455554 35566666665544224677777633221110
Q ss_pred CCCCCCCCccccccccccCCCCCCCcccCCC-CCCchhchhhhHHHHHHHHHHHHHhh
Q 018819 236 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGG-DFDGAKAYKDSKVCNMLTMQEFHRRF 292 (350)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Y~asKaa~~~~~~~la~e~ 292 (350)
...... .+|....|+.++.-...+...+++.+
T Consensus 137 -------------------------~~~k~sg~~p~~~ViG~t~LDs~Rl~~~la~~l 169 (322)
T cd01338 137 -------------------------IAMKNAPDIPPDNFTAMTRLDHNRAKSQLAKKA 169 (322)
T ss_pred -------------------------HHHHHcCCCChHheEEehHHHHHHHHHHHHHHh
Confidence 000011 25667789999998888888888887
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0096 Score=55.58 Aligned_cols=81 Identities=11% Similarity=0.142 Sum_probs=53.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.|.+++|+|++|++|..+++.+...|+ +|+.+.++.++.+.+.+.+. .. .+ .|..+.++..+.+.+... ++
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~lG---a~-~v--i~~~~~~~~~~~i~~~~~--~g 221 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNKLG---FD-DA--FNYKEEPDLDAALKRYFP--NG 221 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcC---Cc-ee--EEcCCcccHHHHHHHhCC--CC
Confidence 578999999999999999998888997 78888888766555543342 22 12 232222233333333321 46
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|+++.+.|.
T Consensus 222 vd~v~d~~g~ 231 (338)
T cd08295 222 IDIYFDNVGG 231 (338)
T ss_pred cEEEEECCCH
Confidence 9999988763
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.048 Score=53.61 Aligned_cols=85 Identities=18% Similarity=0.234 Sum_probs=56.3
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCH-------------HH
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL-------------DS 150 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~-------------~~ 150 (350)
..+.+++|+|+ |.+|+..+..+...|| .|++++++.++.+...+ + |.+ ++..|..+. +.
T Consensus 163 ~pg~kVlViGa-G~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aes-l---GA~--~v~i~~~e~~~~~~gya~~~s~~~ 234 (509)
T PRK09424 163 VPPAKVLVIGA-GVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVES-M---GAE--FLELDFEEEGGSGDGYAKVMSEEF 234 (509)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH-c---CCe--EEEeccccccccccchhhhcchhH
Confidence 45789999997 8999999999999998 89999998877665433 3 333 222333221 11
Q ss_pred HHHHHHHHHHcCCCCcEEEEccccCC
Q 018819 151 VRQFVDTFRRSGRPLDVLVCNAAVYL 176 (350)
Q Consensus 151 v~~~~~~~~~~~g~id~lv~~Ag~~~ 176 (350)
.+...+.+.+..+..|++|.++|+..
T Consensus 235 ~~~~~~~~~~~~~gaDVVIetag~pg 260 (509)
T PRK09424 235 IKAEMALFAEQAKEVDIIITTALIPG 260 (509)
T ss_pred HHHHHHHHHhccCCCCEEEECCCCCc
Confidence 22222222333357999999999843
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.02 Score=56.47 Aligned_cols=77 Identities=16% Similarity=0.169 Sum_probs=56.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
+.+++++|.|+ |++|..+++.|...|+.+|+++.|+.++.+.+.+.+. +..+.+. + .++....+.
T Consensus 264 l~~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~--g~~i~~~--~---~~dl~~al~------- 328 (519)
T PLN00203 264 HASARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFP--DVEIIYK--P---LDEMLACAA------- 328 (519)
T ss_pred CCCCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhC--CCceEee--c---HhhHHHHHh-------
Confidence 67899999998 9999999999999997789999999888888776653 2222221 2 223333322
Q ss_pred CCcEEEEccccC
Q 018819 164 PLDVLVCNAAVY 175 (350)
Q Consensus 164 ~id~lv~~Ag~~ 175 (350)
..|+||.+.+..
T Consensus 329 ~aDVVIsAT~s~ 340 (519)
T PLN00203 329 EADVVFTSTSSE 340 (519)
T ss_pred cCCEEEEccCCC
Confidence 589999987653
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.014 Score=53.91 Aligned_cols=73 Identities=30% Similarity=0.471 Sum_probs=54.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
+.+++++|.|+ |.+|..+++.|...|+..|++++|+.++.+++.+++. . ..+ +.+++.+.+.
T Consensus 176 l~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g---~--~~~-----~~~~~~~~l~------- 237 (311)
T cd05213 176 LKGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEELAKELG---G--NAV-----PLDELLELLN------- 237 (311)
T ss_pred ccCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcC---C--eEE-----eHHHHHHHHh-------
Confidence 57899999987 9999999999999887799999999888777776653 1 121 2233333332
Q ss_pred CCcEEEEcccc
Q 018819 164 PLDVLVCNAAV 174 (350)
Q Consensus 164 ~id~lv~~Ag~ 174 (350)
..|++|.+.+.
T Consensus 238 ~aDvVi~at~~ 248 (311)
T cd05213 238 EADVVISATGA 248 (311)
T ss_pred cCCEEEECCCC
Confidence 47999999875
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.023 Score=54.79 Aligned_cols=75 Identities=23% Similarity=0.418 Sum_probs=54.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+.+++++|.|+ |.+|..+++.|...|+.+|++++|+.++.++..+.+.. ..+. .+++.+.+.
T Consensus 177 ~l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~-----~~i~-----~~~l~~~l~------ 239 (417)
T TIGR01035 177 SLKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGG-----EAVK-----FEDLEEYLA------ 239 (417)
T ss_pred CccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC-----eEee-----HHHHHHHHh------
Confidence 467899999997 99999999999999977999999998777666665531 1221 123333332
Q ss_pred CCCcEEEEccccC
Q 018819 163 RPLDVLVCNAAVY 175 (350)
Q Consensus 163 g~id~lv~~Ag~~ 175 (350)
..|++|.+.+..
T Consensus 240 -~aDvVi~aT~s~ 251 (417)
T TIGR01035 240 -EADIVISSTGAP 251 (417)
T ss_pred -hCCEEEECCCCC
Confidence 589999987653
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.045 Score=48.69 Aligned_cols=79 Identities=23% Similarity=0.247 Sum_probs=52.3
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
.++.+++|+|+++ +|..+++.+...| .+|+.+.++.++.+.+ +.+ +.. . ..|..+.+....+. ....+
T Consensus 133 ~~~~~vli~g~~~-~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~-~~~---g~~-~--~~~~~~~~~~~~~~---~~~~~ 200 (271)
T cd05188 133 KPGDTVLVLGAGG-VGLLAAQLAKAAG-ARVIVTDRSDEKLELA-KEL---GAD-H--VIDYKEEDLEEELR---LTGGG 200 (271)
T ss_pred CCCCEEEEECCCH-HHHHHHHHHHHcC-CeEEEEcCCHHHHHHH-HHh---CCc-e--eccCCcCCHHHHHH---HhcCC
Confidence 3578999999988 9999999999999 4899998886655443 222 221 1 12333333333332 22345
Q ss_pred CCcEEEEcccc
Q 018819 164 PLDVLVCNAAV 174 (350)
Q Consensus 164 ~id~lv~~Ag~ 174 (350)
++|++|++++.
T Consensus 201 ~~d~vi~~~~~ 211 (271)
T cd05188 201 GADVVIDAVGG 211 (271)
T ss_pred CCCEEEECCCC
Confidence 79999999874
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.022 Score=45.73 Aligned_cols=78 Identities=23% Similarity=0.331 Sum_probs=53.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh-------------------hHHHHHHHHhcc--CCCceEEEEcc
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-------------------LKAERAAKSAGM--AKENYTIMHLD 144 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~-------------------~~~~~~~~~l~~--~~~~v~~~~~D 144 (350)
+++++|.|+ ||+|..+++.|+..|..++.+++.+. .+.+.+.+.+.+ +..++..+..+
T Consensus 2 ~~~v~iiG~-G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 2 NKRVLIIGA-GGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp T-EEEEEST-SHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCEEEEECc-CHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 457888886 89999999999999988999987741 233444444432 35567777777
Q ss_pred CCCHHHHHHHHHHHHHcCCCCcEEEEcc
Q 018819 145 LASLDSVRQFVDTFRRSGRPLDVLVCNA 172 (350)
Q Consensus 145 vs~~~~v~~~~~~~~~~~g~id~lv~~A 172 (350)
+ +.+...++++ ..|++|.+.
T Consensus 81 ~-~~~~~~~~~~-------~~d~vi~~~ 100 (135)
T PF00899_consen 81 I-DEENIEELLK-------DYDIVIDCV 100 (135)
T ss_dssp C-SHHHHHHHHH-------TSSEEEEES
T ss_pred c-cccccccccc-------CCCEEEEec
Confidence 7 3344555553 578888764
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.013 Score=55.00 Aligned_cols=81 Identities=11% Similarity=0.113 Sum_probs=53.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+|.++||+|++|++|..+++.....|+ +|+.+.++.++.+.+.+++ |.+. + .|..+.+++.+.+.+.. .++
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~~l---Ga~~-v--i~~~~~~~~~~~i~~~~--~~g 228 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKNKL---GFDE-A--FNYKEEPDLDAALKRYF--PEG 228 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhc---CCCE-E--EECCCcccHHHHHHHHC--CCC
Confidence 578999999999999999998888996 7888888776655443344 2221 1 23332223333333332 136
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|+++.+.|.
T Consensus 229 vD~v~d~vG~ 238 (348)
T PLN03154 229 IDIYFDNVGG 238 (348)
T ss_pred cEEEEECCCH
Confidence 9999988773
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.016 Score=54.04 Aligned_cols=77 Identities=21% Similarity=0.292 Sum_probs=49.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC-C-
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG-R- 163 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~-g- 163 (350)
|.++||+||+||+|...++.....|+ .++++..+.++.+ ..+++ |.+. ..|..+.+ +.+++.+.. +
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~-~~~~l---GAd~---vi~y~~~~----~~~~v~~~t~g~ 210 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLE-LLKEL---GADH---VINYREED----FVEQVRELTGGK 210 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHH-HHHhc---CCCE---EEcCCccc----HHHHHHHHcCCC
Confidence 88999999999999999999999997 5555555544444 44443 3322 22344433 333333322 2
Q ss_pred CCcEEEEcccc
Q 018819 164 PLDVLVCNAAV 174 (350)
Q Consensus 164 ~id~lv~~Ag~ 174 (350)
++|+++...|.
T Consensus 211 gvDvv~D~vG~ 221 (326)
T COG0604 211 GVDVVLDTVGG 221 (326)
T ss_pred CceEEEECCCH
Confidence 69999988775
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.018 Score=55.69 Aligned_cols=75 Identities=28% Similarity=0.399 Sum_probs=54.4
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+.+++++|.|+ |.+|..+++.|...|+..|++++|+.++.+.+.+.+. . ++.+.+++.+.+
T Consensus 179 ~~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g---~-------~~~~~~~~~~~l------- 240 (423)
T PRK00045 179 DLSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFG---G-------EAIPLDELPEAL------- 240 (423)
T ss_pred CccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcC---C-------cEeeHHHHHHHh-------
Confidence 367899999987 9999999999999997789999999888777766653 1 111223332222
Q ss_pred CCCcEEEEccccC
Q 018819 163 RPLDVLVCNAAVY 175 (350)
Q Consensus 163 g~id~lv~~Ag~~ 175 (350)
...|++|.+.|..
T Consensus 241 ~~aDvVI~aT~s~ 253 (423)
T PRK00045 241 AEADIVISSTGAP 253 (423)
T ss_pred ccCCEEEECCCCC
Confidence 2579999887753
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.024 Score=52.97 Aligned_cols=39 Identities=36% Similarity=0.580 Sum_probs=34.1
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~ 121 (350)
..+.+++++|.|+ ||||..+++.|+..|..+|.+++.+.
T Consensus 20 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 20 QKLREKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred HHhcCCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 3567889999998 89999999999999987999998863
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.027 Score=51.96 Aligned_cols=113 Identities=19% Similarity=0.175 Sum_probs=69.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC-cEEEEEecChhHHHHHHHHhccC----CCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 88 SVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMA----KENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga-~~Vi~~~r~~~~~~~~~~~l~~~----~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+.|.|+ |++|..+|..|+..|. ..|++++++.+..+....++... +....... .+.+++
T Consensus 2 kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~---~~~~~l----------- 66 (306)
T cd05291 2 KVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKA---GDYSDC----------- 66 (306)
T ss_pred EEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEc---CCHHHh-----------
Confidence 5788886 8999999999999995 38999999887776666655321 12222221 222211
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEecc
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 227 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~ 227 (350)
...|++|+++|.... + .++.. ..++.|. .+.+.+.+.+.+... .+.+|++|-.
T Consensus 67 ~~aDIVIitag~~~~--~--g~~R~---dll~~N~----~i~~~~~~~i~~~~~-~~~vivvsNP 119 (306)
T cd05291 67 KDADIVVITAGAPQK--P--GETRL---DLLEKNA----KIMKSIVPKIKASGF-DGIFLVASNP 119 (306)
T ss_pred CCCCEEEEccCCCCC--C--CCCHH---HHHHHHH----HHHHHHHHHHHHhCC-CeEEEEecCh
Confidence 368999999998532 1 23333 3344453 344555555554432 4677777643
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.015 Score=54.28 Aligned_cols=79 Identities=15% Similarity=0.189 Sum_probs=52.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
.++||+|++|++|..+++.....|+.+|+.+.++.++.+.+.+++. ... ++ |..+ +++.+.+.++.. +++|
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lG---a~~-vi--~~~~-~~~~~~i~~~~~--~gvd 226 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELG---FDA-AI--NYKT-DNVAERLRELCP--EGVD 226 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcC---CcE-EE--ECCC-CCHHHHHHHHCC--CCce
Confidence 7999999999999999988888896478888888766655544443 222 22 2222 223333333322 4699
Q ss_pred EEEEcccc
Q 018819 167 VLVCNAAV 174 (350)
Q Consensus 167 ~lv~~Ag~ 174 (350)
+++.+.|.
T Consensus 227 ~vid~~g~ 234 (345)
T cd08293 227 VYFDNVGG 234 (345)
T ss_pred EEEECCCc
Confidence 99988763
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.027 Score=51.44 Aligned_cols=80 Identities=20% Similarity=0.296 Sum_probs=54.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
++++++|+|++++||..+++.+...|+ .|+++.++.+..+.+ +.+ +.. ...|..+.+....+.+ ... .++
T Consensus 139 ~~~~vlv~g~~~~ig~~~~~~~~~~g~-~v~~~~~~~~~~~~~-~~~---g~~---~~~~~~~~~~~~~~~~-~~~-~~~ 208 (323)
T cd05276 139 AGETVLIHGGASGVGTAAIQLAKALGA-RVIATAGSEEKLEAC-RAL---GAD---VAINYRTEDFAEEVKE-ATG-GRG 208 (323)
T ss_pred CCCEEEEEcCcChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHH-HHc---CCC---EEEeCCchhHHHHHHH-HhC-CCC
Confidence 578999999999999999999999996 788888887665544 333 222 1234444333333332 222 246
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|.+++++|.
T Consensus 209 ~d~vi~~~g~ 218 (323)
T cd05276 209 VDVILDMVGG 218 (323)
T ss_pred eEEEEECCch
Confidence 9999999874
|
PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.021 Score=50.21 Aligned_cols=74 Identities=22% Similarity=0.280 Sum_probs=55.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
.++|.|+ |-+|+.+|+.|.+.| +.|+++.++.+..++....- ..+..+.+|-+|++.++++- ....|.
T Consensus 2 ~iiIiG~-G~vG~~va~~L~~~g-~~Vv~Id~d~~~~~~~~~~~----~~~~~v~gd~t~~~~L~~ag------i~~aD~ 69 (225)
T COG0569 2 KIIIIGA-GRVGRSVARELSEEG-HNVVLIDRDEERVEEFLADE----LDTHVVIGDATDEDVLEEAG------IDDADA 69 (225)
T ss_pred EEEEECC-cHHHHHHHHHHHhCC-CceEEEEcCHHHHHHHhhhh----cceEEEEecCCCHHHHHhcC------CCcCCE
Confidence 5677775 789999999999999 69999999988877643311 24788899999988777651 125677
Q ss_pred EEEccc
Q 018819 168 LVCNAA 173 (350)
Q Consensus 168 lv~~Ag 173 (350)
+|-..|
T Consensus 70 vva~t~ 75 (225)
T COG0569 70 VVAATG 75 (225)
T ss_pred EEEeeC
Confidence 765554
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.017 Score=53.61 Aligned_cols=80 Identities=13% Similarity=0.114 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+|.++||+|++|++|..+++.....|+ +|+.+.++.++.+.+ .++ |.+. + .|..+.+...+.+.... .++
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~-~~l---Ga~~-v--i~~~~~~~~~~~~~~~~--~~g 207 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYL-KKL---GFDV-A--FNYKTVKSLEETLKKAS--PDG 207 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH-HHc---CCCE-E--EeccccccHHHHHHHhC--CCC
Confidence 578999999999999999998888997 788888887665544 333 3322 2 23333223344343332 236
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|+++.+.|.
T Consensus 208 vdvv~d~~G~ 217 (325)
T TIGR02825 208 YDCYFDNVGG 217 (325)
T ss_pred eEEEEECCCH
Confidence 9999988763
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.024 Score=53.17 Aligned_cols=80 Identities=23% Similarity=0.318 Sum_probs=53.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+|+.+||.||+||+|.+.++-....|+.+|+.++ +.+. .++.+.+. .+ ...|..+++-++.+.+.. .++
T Consensus 157 ~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~-s~e~-~~l~k~lG---Ad---~vvdy~~~~~~e~~kk~~---~~~ 225 (347)
T KOG1198|consen 157 KGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTAC-SKEK-LELVKKLG---AD---EVVDYKDENVVELIKKYT---GKG 225 (347)
T ss_pred CCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEc-ccch-HHHHHHcC---Cc---EeecCCCHHHHHHHHhhc---CCC
Confidence 6789999999999999999988888953454444 4333 23444443 22 245777744443333322 568
Q ss_pred CcEEEEccccC
Q 018819 165 LDVLVCNAAVY 175 (350)
Q Consensus 165 id~lv~~Ag~~ 175 (350)
+|+|+-|.|..
T Consensus 226 ~DvVlD~vg~~ 236 (347)
T KOG1198|consen 226 VDVVLDCVGGS 236 (347)
T ss_pred ccEEEECCCCC
Confidence 99999999863
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.025 Score=53.84 Aligned_cols=37 Identities=32% Similarity=0.412 Sum_probs=33.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
.+.+++++|.|+ ||+|..+++.|+..|..++.+++++
T Consensus 132 ~l~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 132 RLLEARVLLIGA-GGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HHhcCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 467888999975 8999999999999998899999887
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.036 Score=49.37 Aligned_cols=37 Identities=30% Similarity=0.468 Sum_probs=33.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
.+++++++|.|+ ||+|..+++.|+..|..++.+++.+
T Consensus 29 ~L~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 29 KLKAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred HhcCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 567889999998 9999999999999998899998775
|
|
| >cd05288 PGDH Prostaglandin dehydrogenases | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.067 Score=49.41 Aligned_cols=80 Identities=13% Similarity=0.160 Sum_probs=52.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
++.+++|.|+++++|..+++.+...|+ +|+.+.++.++.+.+.+.+. .. .+ .|..+.+..+.+ .+.. . ++
T Consensus 145 ~~~~vlI~g~~g~ig~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~~g---~~-~~--~~~~~~~~~~~v-~~~~-~-~~ 214 (329)
T cd05288 145 PGETVVVSAAAGAVGSVVGQIAKLLGA-RVVGIAGSDEKCRWLVEELG---FD-AA--INYKTPDLAEAL-KEAA-P-DG 214 (329)
T ss_pred CCCEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhhcC---Cc-eE--EecCChhHHHHH-HHhc-c-CC
Confidence 578999999999999999999999996 88888887766554433232 21 12 223333322222 2222 1 47
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|+++++.|.
T Consensus 215 ~d~vi~~~g~ 224 (329)
T cd05288 215 IDVYFDNVGG 224 (329)
T ss_pred ceEEEEcchH
Confidence 9999988763
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.033 Score=49.09 Aligned_cols=37 Identities=32% Similarity=0.495 Sum_probs=32.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
.+.+++++|.|+ ||+|.++|+.|+..|..++.+++.+
T Consensus 18 ~L~~~~VlivG~-GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 18 KLKNARVLVVGA-GGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred HHhCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 567789999985 8999999999999998889888654
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.044 Score=47.68 Aligned_cols=37 Identities=41% Similarity=0.479 Sum_probs=33.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
.+++++++|.|+ ||+|..+++.|+..|..++.+.+.+
T Consensus 25 ~L~~~~V~ViG~-GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 25 KLKKAKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHhCCCEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 567788999996 8999999999999998889999886
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.069 Score=49.48 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=69.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC-cEEEEEecChhHHHHHHHHhccCC---CceEEEEccCCCHHHHHHHHHHHHH
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAK---ENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga-~~Vi~~~r~~~~~~~~~~~l~~~~---~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
.++.+.|+|+ |++|..+|..|+..|. ..+++++++.+.++....++.... .++.... .+.++
T Consensus 5 ~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~---~~~~~---------- 70 (315)
T PRK00066 5 QHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYA---GDYSD---------- 70 (315)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEe---CCHHH----------
Confidence 4568999998 9999999999999883 379999998776665555554221 1222221 22221
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEec
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS 226 (350)
+..-|++|..||.... + .++.. ..++.|.. +.+.+.+.+.+... .+.+|++|-
T Consensus 71 -~~~adivIitag~~~k--~--g~~R~---dll~~N~~----i~~~i~~~i~~~~~-~~~vivvsN 123 (315)
T PRK00066 71 -CKDADLVVITAGAPQK--P--GETRL---DLVEKNLK----IFKSIVGEVMASGF-DGIFLVASN 123 (315)
T ss_pred -hCCCCEEEEecCCCCC--C--CCCHH---HHHHHHHH----HHHHHHHHHHHhCC-CeEEEEccC
Confidence 1268999999998532 1 23443 33445543 33444444444332 357777663
|
|
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.031 Score=51.64 Aligned_cols=75 Identities=19% Similarity=0.286 Sum_probs=50.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.+.+++|+|+++++|.++++.+...|+ +|+.+.++.++.+.+ ..+ +.. .++ |.. ++.+ .+.+ ..+
T Consensus 162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~-~v~~~~~~~~~~~~~-~~~---~~~-~~~--~~~---~~~~---~~~~-~~~ 226 (332)
T cd08259 162 KGDTVLVTGAGGGVGIHAIQLAKALGA-RVIAVTRSPEKLKIL-KEL---GAD-YVI--DGS---KFSE---DVKK-LGG 226 (332)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHH-HHc---CCc-EEE--ecH---HHHH---HHHh-ccC
Confidence 477999999999999999999999995 888888876654443 222 221 111 221 1222 2222 237
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++++++|.
T Consensus 227 ~d~v~~~~g~ 236 (332)
T cd08259 227 ADVVIELVGS 236 (332)
T ss_pred CCEEEECCCh
Confidence 9999999874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.015 Score=52.14 Aligned_cols=74 Identities=19% Similarity=0.280 Sum_probs=53.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
.++|+|||+- |+.+++.|.+.| +.|+...++....+... .. ....+..+.-|.+++.+++.+- ++|.
T Consensus 2 ~ILvlGGT~e-gr~la~~L~~~g-~~v~~s~~t~~~~~~~~----~~--g~~~v~~g~l~~~~l~~~l~~~-----~i~~ 68 (256)
T TIGR00715 2 TVLLMGGTVD-SRAIAKGLIAQG-IEILVTVTTSEGKHLYP----IH--QALTVHTGALDPQELREFLKRH-----SIDI 68 (256)
T ss_pred eEEEEechHH-HHHHHHHHHhCC-CeEEEEEccCCcccccc----cc--CCceEEECCCCHHHHHHHHHhc-----CCCE
Confidence 6899999987 999999999999 68998888765433221 11 1234456777777776666542 7999
Q ss_pred EEEcccc
Q 018819 168 LVCNAAV 174 (350)
Q Consensus 168 lv~~Ag~ 174 (350)
||+.+..
T Consensus 69 VIDAtHP 75 (256)
T TIGR00715 69 LVDATHP 75 (256)
T ss_pred EEEcCCH
Confidence 9988743
|
This enzyme was found to be a monomer by gel filtration. |
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.026 Score=55.40 Aligned_cols=47 Identities=32% Similarity=0.388 Sum_probs=39.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHh
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA 131 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l 131 (350)
.+++++++|+|+ ||+|++++..|++.|+ +|++++|+.++.++..+.+
T Consensus 329 ~~~~k~vlIiGa-GgiG~aia~~L~~~G~-~V~i~~R~~~~~~~la~~~ 375 (477)
T PRK09310 329 PLNNQHVAIVGA-GGAAKAIATTLARAGA-ELLIFNRTKAHAEALASRC 375 (477)
T ss_pred CcCCCEEEEEcC-cHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh
Confidence 457889999996 7999999999999996 8999999987777665544
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.033 Score=52.17 Aligned_cols=77 Identities=13% Similarity=0.122 Sum_probs=51.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
++++++|+|+ |++|...++.+...|+.+|+++++++++.+.+ +++ |... ..|..+. ++.+ +.+..+.
T Consensus 169 ~g~~VlV~G~-G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a-~~l---Ga~~---vi~~~~~-~~~~----~~~~~g~ 235 (343)
T PRK09880 169 QGKRVFVSGV-GPIGCLIVAAVKTLGAAEIVCADVSPRSLSLA-REM---GADK---LVNPQND-DLDH----YKAEKGY 235 (343)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHH-HHc---CCcE---EecCCcc-cHHH----HhccCCC
Confidence 5789999986 89999999988889976788888887666543 334 3322 1244332 2332 2222356
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|.+.|.
T Consensus 236 ~D~vid~~G~ 245 (343)
T PRK09880 236 FDVSFEVSGH 245 (343)
T ss_pred CCEEEECCCC
Confidence 9999999874
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.029 Score=51.17 Aligned_cols=42 Identities=19% Similarity=0.412 Sum_probs=36.5
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAER 126 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~ 126 (350)
.+.+++++|+|. |++|+.+|+.|...|+ +|++.+|+.++.+.
T Consensus 148 ~l~gk~v~IiG~-G~iG~avA~~L~~~G~-~V~v~~R~~~~~~~ 189 (287)
T TIGR02853 148 TIHGSNVMVLGF-GRTGMTIARTFSALGA-RVFVGARSSADLAR 189 (287)
T ss_pred CCCCCEEEEEcC-hHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence 578999999998 7799999999999996 99999998765443
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.095 Score=44.20 Aligned_cols=76 Identities=22% Similarity=0.284 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCc---eEEEEccCCCHHHHHHHHHHHHHc
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKEN---YTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~---v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+++++|-.|++.|. ++..+++++ .+|+.++++++..+.+.+.+...+.+ +.++.+|+.+. +.+
T Consensus 23 ~~~~vLd~G~G~G~---~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~---------~~~- 88 (188)
T PRK14968 23 KGDRVLEVGTGSGI---VAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP---------FRG- 88 (188)
T ss_pred CCCEEEEEccccCH---HHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc---------ccc-
Confidence 56688988887776 555566667 59999999977766665555433322 77888887542 111
Q ss_pred CCCCcEEEEccccC
Q 018819 162 GRPLDVLVCNAAVY 175 (350)
Q Consensus 162 ~g~id~lv~~Ag~~ 175 (350)
..+|.++.|....
T Consensus 89 -~~~d~vi~n~p~~ 101 (188)
T PRK14968 89 -DKFDVILFNPPYL 101 (188)
T ss_pred -cCceEEEECCCcC
Confidence 2689999987764
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.05 Score=48.28 Aligned_cols=38 Identities=32% Similarity=0.450 Sum_probs=33.5
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~ 121 (350)
.+++.+++|.|+ ||+|..+++.|+..|..++.+++.+.
T Consensus 21 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 21 ALKASRVLIVGL-GGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred HHhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 567788999986 79999999999999988999998864
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.11 Score=50.98 Aligned_cols=84 Identities=18% Similarity=0.236 Sum_probs=56.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCC-------------CHHH
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA-------------SLDS 150 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs-------------~~~~ 150 (350)
..+.+++|.|+ |.+|...+..+...|+ .|++++++..+.+.... + |. .++..|.. +.+.
T Consensus 162 vp~akVlViGa-G~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~-l---Ga--~~v~v~~~e~g~~~~gYa~~~s~~~ 233 (511)
T TIGR00561 162 VPPAKVLVIGA-GVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS-M---GA--EFLELDFKEEGGSGDGYAKVMSEEF 233 (511)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH-c---CC--eEEeccccccccccccceeecCHHH
Confidence 34568999996 8999999999999997 68888888776554432 3 22 33344432 1233
Q ss_pred HHHHHHHHHHcCCCCcEEEEccccC
Q 018819 151 VRQFVDTFRRSGRPLDVLVCNAAVY 175 (350)
Q Consensus 151 v~~~~~~~~~~~g~id~lv~~Ag~~ 175 (350)
.+...+.+.+.....|++|+++-+.
T Consensus 234 ~~~~~~~~~e~~~~~DIVI~Talip 258 (511)
T TIGR00561 234 IAAEMELFAAQAKEVDIIITTALIP 258 (511)
T ss_pred HHHHHHHHHHHhCCCCEEEECcccC
Confidence 3334444455556799999999553
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.033 Score=59.08 Aligned_cols=78 Identities=23% Similarity=0.345 Sum_probs=60.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCc-------------EEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHH
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKW-------------HIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSV 151 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~-------------~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v 151 (350)
+.|.++|.|+ |.+|...++.|++.+-. .|.+++++.+..+++.+.+. ++..+++|++|.+++
T Consensus 568 ~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~----~~~~v~lDv~D~e~L 642 (1042)
T PLN02819 568 KSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIE----NAEAVQLDVSDSESL 642 (1042)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcC----CCceEEeecCCHHHH
Confidence 3568999997 89999999999986422 37888888877777666542 467889999999887
Q ss_pred HHHHHHHHHcCCCCcEEEEcccc
Q 018819 152 RQFVDTFRRSGRPLDVLVCNAAV 174 (350)
Q Consensus 152 ~~~~~~~~~~~g~id~lv~~Ag~ 174 (350)
.++++ .+|+||++...
T Consensus 643 ~~~v~-------~~DaVIsalP~ 658 (1042)
T PLN02819 643 LKYVS-------QVDVVISLLPA 658 (1042)
T ss_pred HHhhc-------CCCEEEECCCc
Confidence 77655 58999999764
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.039 Score=49.99 Aligned_cols=83 Identities=19% Similarity=0.229 Sum_probs=51.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++.+++|.|+ ||+|..+++.|+..|..++.+++.+.-+...+.. ++.+-.-|+... -++.+.+++.+..
T Consensus 24 kL~~s~VlIvG~-GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnR-------Q~l~~~~diG~~-Kve~a~~~l~~iN 94 (287)
T PRK08223 24 RLRNSRVAIAGL-GGVGGIHLLTLARLGIGKFTIADFDVFELRNFNR-------QAGAMMSTLGRP-KAEVLAEMVRDIN 94 (287)
T ss_pred HHhcCCEEEECC-CHHHHHHHHHHHHhCCCeEEEEeCCCcchhcccc-------ccCcChhHCCCc-HHHHHHHHHHHHC
Confidence 567889999987 7999999999999999899999886433222211 122222344332 2344444454444
Q ss_pred CCCcEEEEcccc
Q 018819 163 RPLDVLVCNAAV 174 (350)
Q Consensus 163 g~id~lv~~Ag~ 174 (350)
+.+++-.++..+
T Consensus 95 P~v~V~~~~~~l 106 (287)
T PRK08223 95 PELEIRAFPEGI 106 (287)
T ss_pred CCCEEEEEeccc
Confidence 555555544433
|
|
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.048 Score=53.03 Aligned_cols=77 Identities=21% Similarity=0.253 Sum_probs=51.8
Q ss_pred ccCCCEEEEEcC----------------CCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCC
Q 018819 83 TLRKGSVIITGA----------------SSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA 146 (350)
Q Consensus 83 ~l~~~~~lItGg----------------s~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs 146 (350)
+|+||.+|||+| ||-.|+++|+.+..+|| .|.+++-... +. ....+.++ ++.
T Consensus 253 ~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA-~VtlI~Gp~~--------~~-~p~~v~~i--~V~ 320 (475)
T PRK13982 253 PLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGA-EVTLISGPVD--------LA-DPQGVKVI--HVE 320 (475)
T ss_pred ccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCC-cEEEEeCCcC--------CC-CCCCceEE--Eec
Confidence 589999999997 67799999999999997 6666653221 11 11234444 344
Q ss_pred CHHHHHHHHHHHHHcCCCCcEEEEccccC
Q 018819 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVY 175 (350)
Q Consensus 147 ~~~~v~~~~~~~~~~~g~id~lv~~Ag~~ 175 (350)
+.++ +.+.+.+.+. .|++|++|.+.
T Consensus 321 ta~e---M~~av~~~~~-~Di~I~aAAVa 345 (475)
T PRK13982 321 SARQ---MLAAVEAALP-ADIAIFAAAVA 345 (475)
T ss_pred CHHH---HHHHHHhhCC-CCEEEEecccc
Confidence 4444 4444444443 79999999985
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.062 Score=50.63 Aligned_cols=38 Identities=34% Similarity=0.434 Sum_probs=33.7
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
..+++.+++|.|+ ||+|..+++.|+..|..++.+++.+
T Consensus 24 ~~L~~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 24 QSLFDAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred HHHhCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3567889999987 8999999999999998899998875
|
|
| >TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.076 Score=48.54 Aligned_cols=79 Identities=16% Similarity=0.248 Sum_probs=52.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
++++++|+|+++++|..+++.+...|+ +|+++.++.+..+.+ .++ +.+. ..+..+.+....+... .. ..+
T Consensus 139 ~~~~vlv~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~-~~~---g~~~---~~~~~~~~~~~~~~~~-~~-~~~ 208 (325)
T TIGR02824 139 AGETVLIHGGASGIGTTAIQLAKAFGA-RVFTTAGSDEKCAAC-EAL---GADI---AINYREEDFVEVVKAE-TG-GKG 208 (325)
T ss_pred CCCEEEEEcCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH-HHc---CCcE---EEecCchhHHHHHHHH-cC-CCC
Confidence 578999999999999999999999996 888888887665433 333 2221 1233333333333222 11 236
Q ss_pred CcEEEEccc
Q 018819 165 LDVLVCNAA 173 (350)
Q Consensus 165 id~lv~~Ag 173 (350)
+|.+|+++|
T Consensus 209 ~d~~i~~~~ 217 (325)
T TIGR02824 209 VDVILDIVG 217 (325)
T ss_pred eEEEEECCc
Confidence 999999877
|
Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.071 Score=41.26 Aligned_cols=71 Identities=20% Similarity=0.266 Sum_probs=51.6
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcEE
Q 018819 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVL 168 (350)
Q Consensus 89 ~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~l 168 (350)
++|.|. +.+|+.+++.|.+.+ ..|+++.++.+..+.+.+. .+.++.+|.+|++.++++ .+ ...+.+
T Consensus 1 vvI~G~-g~~~~~i~~~L~~~~-~~vvvid~d~~~~~~~~~~------~~~~i~gd~~~~~~l~~a--~i----~~a~~v 66 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKEGG-IDVVVIDRDPERVEELREE------GVEVIYGDATDPEVLERA--GI----EKADAV 66 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHT------TSEEEES-TTSHHHHHHT--TG----GCESEE
T ss_pred eEEEcC-CHHHHHHHHHHHhCC-CEEEEEECCcHHHHHHHhc------ccccccccchhhhHHhhc--Cc----cccCEE
Confidence 577777 589999999999977 6899999998776665443 267889999999987765 11 256777
Q ss_pred EEccc
Q 018819 169 VCNAA 173 (350)
Q Consensus 169 v~~Ag 173 (350)
|....
T Consensus 67 v~~~~ 71 (116)
T PF02254_consen 67 VILTD 71 (116)
T ss_dssp EEESS
T ss_pred EEccC
Confidence 65543
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.095 Score=44.08 Aligned_cols=32 Identities=38% Similarity=0.407 Sum_probs=28.2
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh
Q 018819 89 VIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (350)
Q Consensus 89 ~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~ 121 (350)
++|.|+ ||+|..+++.|+..|..++.+.+.+.
T Consensus 2 VlViG~-GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 2 VGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred EEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 678885 89999999999999987899998864
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.089 Score=45.34 Aligned_cols=37 Identities=35% Similarity=0.462 Sum_probs=33.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
.+..++++|.|+ ||+|..+|..|+..|..++++.+.+
T Consensus 18 ~L~~~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 18 KLEQATVAICGL-GGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCC
Confidence 567788999998 7999999999999997689999887
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.069 Score=52.00 Aligned_cols=59 Identities=20% Similarity=0.230 Sum_probs=43.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHH
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQ 153 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~ 153 (350)
.++|.|+ |.+|+.+++.|.++| ..|++++++.+..+...+.. .+.++.+|.++.+.+++
T Consensus 2 ~viIiG~-G~ig~~~a~~L~~~g-~~v~vid~~~~~~~~~~~~~-----~~~~~~gd~~~~~~l~~ 60 (453)
T PRK09496 2 KIIIVGA-GQVGYTLAENLSGEN-NDVTVIDTDEERLRRLQDRL-----DVRTVVGNGSSPDVLRE 60 (453)
T ss_pred EEEEECC-CHHHHHHHHHHHhCC-CcEEEEECCHHHHHHHHhhc-----CEEEEEeCCCCHHHHHH
Confidence 5888887 999999999999999 58999999887766554321 24555666666554443
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.093 Score=48.43 Aligned_cols=79 Identities=11% Similarity=0.125 Sum_probs=51.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+|.++||+||+|++|..+++.....|+ +|+.+.++.++.+.+.+ + |.+ .+ .|..+.+..+. +.+... ++
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~-~---Ga~-~v--i~~~~~~~~~~-v~~~~~--~g 211 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKE-L---GFD-AV--FNYKTVSLEEA-LKEAAP--DG 211 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH-c---CCC-EE--EeCCCccHHHH-HHHHCC--CC
Confidence 578999999999999999998888997 78888888766554432 3 332 12 23333222222 222221 46
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|+++.+.|.
T Consensus 212 vd~vld~~g~ 221 (329)
T cd08294 212 IDCYFDNVGG 221 (329)
T ss_pred cEEEEECCCH
Confidence 9999988763
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.11 Score=49.12 Aligned_cols=80 Identities=15% Similarity=0.105 Sum_probs=53.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCC-HHHHHHHHHHHHHcCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS-LDSVRQFVDTFRRSGR 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~-~~~v~~~~~~~~~~~g 163 (350)
.+.++||+|+ |+||...++.....|+.+|+.++++.++.+.+ +++ |... ..|..+ .+++.+.+.++.. +
T Consensus 185 ~g~~VlV~G~-G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a-~~~---Ga~~---~i~~~~~~~~~~~~v~~~~~--~ 254 (368)
T TIGR02818 185 EGDTVAVFGL-GGIGLSVIQGARMAKASRIIAIDINPAKFELA-KKL---GATD---CVNPNDYDKPIQEVIVEITD--G 254 (368)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHh---CCCe---EEcccccchhHHHHHHHHhC--C
Confidence 4789999985 89999999988888976788888887765544 333 3221 223332 2233333333333 3
Q ss_pred CCcEEEEcccc
Q 018819 164 PLDVLVCNAAV 174 (350)
Q Consensus 164 ~id~lv~~Ag~ 174 (350)
.+|++|.++|.
T Consensus 255 g~d~vid~~G~ 265 (368)
T TIGR02818 255 GVDYSFECIGN 265 (368)
T ss_pred CCCEEEECCCC
Confidence 69999999874
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >COG3007 Uncharacterized paraquat-inducible protein B [Function unknown] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.16 Score=45.54 Aligned_cols=87 Identities=23% Similarity=0.207 Sum_probs=57.4
Q ss_pred CEEEEEcCCCchHHHH--HHHHHHcCCcEEEEEe-cCh----------hHHHHHHHHhccCCCceEEEEccCCCHHHHHH
Q 018819 87 GSVIITGASSGLGLAT--AKALAETGKWHIIMAC-RDF----------LKAERAAKSAGMAKENYTIMHLDLASLDSVRQ 153 (350)
Q Consensus 87 ~~~lItGgs~gIG~~i--a~~la~~Ga~~Vi~~~-r~~----------~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~ 153 (350)
|.+||.|+|+|.|++. +-.|- .||..+=+.. |.. -......+..++.|--..-+..|.-+.+--+.
T Consensus 42 KkVLviGaSsGyGLa~RIsaaFG-~gAdTiGVffE~pgte~~~gtagwyn~~~f~~~A~~kGlyAksingDaFS~e~k~k 120 (398)
T COG3007 42 KKVLVIGASSGYGLAARISAAFG-PGADTIGVFFERPGTERKPGTAGWYNNAAFKKFAKQKGLYAKSINGDAFSDEMKQK 120 (398)
T ss_pred ceEEEEecCCcccHHHHHHHHhC-CCCceeeEEeecCCccCCCcchhhhHHHHHHHHHHhcCceeeecccchhhHHHHHH
Confidence 5899999999999874 33443 5665543332 211 00111222223345455667789988888889
Q ss_pred HHHHHHHcCCCCcEEEEcccc
Q 018819 154 FVDTFRRSGRPLDVLVCNAAV 174 (350)
Q Consensus 154 ~~~~~~~~~g~id~lv~~Ag~ 174 (350)
.++.++..+|.+|.+|+.-..
T Consensus 121 vIe~Ik~~~g~vDlvvYSlAs 141 (398)
T COG3007 121 VIEAIKQDFGKVDLVVYSLAS 141 (398)
T ss_pred HHHHHHHhhccccEEEEeccC
Confidence 999999999999999987543
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.11 Score=49.09 Aligned_cols=37 Identities=32% Similarity=0.510 Sum_probs=32.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
.+.+.+++|.|+ ||+|..+++.|+..|..++.+++.+
T Consensus 38 ~l~~~~VliiG~-GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 38 RLHNARVLVIGA-GGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred HhcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 567788999987 7999999999999998899998875
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.097 Score=48.23 Aligned_cols=32 Identities=34% Similarity=0.394 Sum_probs=28.3
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh
Q 018819 89 VIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (350)
Q Consensus 89 ~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~ 121 (350)
++|.|+ ||||.++++.|+..|..++.+++.+.
T Consensus 2 VlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D~ 33 (312)
T cd01489 2 VLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDT 33 (312)
T ss_pred EEEECC-CHHHHHHHHHHHHhcCCeEEEEcCCC
Confidence 688886 89999999999999998999988753
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.049 Score=45.48 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=33.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
++.+++++|.|++.-+|..+++.|.++|+ +|.++.|+
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~ 77 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSK 77 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECC
Confidence 57999999999966679999999999997 88888886
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.074 Score=46.94 Aligned_cols=40 Identities=30% Similarity=0.409 Sum_probs=34.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK 123 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~ 123 (350)
.+.+++++|.|+ ||+|.++++.|+..|..++.+++.+.-+
T Consensus 24 ~L~~~~VlIiG~-GGlGs~ia~~La~~Gvg~i~lvD~D~ve 63 (231)
T PRK08328 24 KLKKAKVAVVGV-GGLGSPVAYYLAAAGVGRILLIDEQTPE 63 (231)
T ss_pred HHhCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCccC
Confidence 567788999986 7999999999999998899999876433
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.093 Score=45.09 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=32.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
.+++++++|.|+ ||+|.++++.|+..|..++.+++.+
T Consensus 18 ~L~~s~VlIiG~-gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 18 RLRSARILLIGL-KGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HHHhCcEEEEcC-CHHHHHHHHHHHHcCCCEEEEEECC
Confidence 567788999975 6799999999999998889998765
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.13 Score=48.83 Aligned_cols=80 Identities=21% Similarity=0.151 Sum_probs=53.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCH-HHHHHHHHHHHHcCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL-DSVRQFVDTFRRSGR 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~-~~v~~~~~~~~~~~g 163 (350)
.|.+++|.|+ |+||..+++.+...|+.+|+.++++.++.+.+ +++ |... + .|..+. +++.+.+.++.. +
T Consensus 198 ~g~~VlV~G~-G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a-~~~---Ga~~-~--i~~~~~~~~~~~~v~~~~~--~ 267 (381)
T PLN02740 198 AGSSVAIFGL-GAVGLAVAEGARARGASKIIGVDINPEKFEKG-KEM---GITD-F--INPKDSDKPVHERIREMTG--G 267 (381)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCCcEEEEcCChHHHHHH-HHc---CCcE-E--EecccccchHHHHHHHHhC--C
Confidence 5789999985 99999999998899975788888887766554 333 3322 2 233332 123333333332 2
Q ss_pred CCcEEEEcccc
Q 018819 164 PLDVLVCNAAV 174 (350)
Q Consensus 164 ~id~lv~~Ag~ 174 (350)
.+|++|.+.|.
T Consensus 268 g~dvvid~~G~ 278 (381)
T PLN02740 268 GVDYSFECAGN 278 (381)
T ss_pred CCCEEEECCCC
Confidence 69999999884
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.14 Score=47.53 Aligned_cols=73 Identities=21% Similarity=0.247 Sum_probs=52.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+|++++|+|.+ |+|...++.....|| +|+..+|+.++.+.+.+ + |.+.. .|-+|.+.++.+-+ .
T Consensus 166 pG~~V~I~G~G-GlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~-l---GAd~~---i~~~~~~~~~~~~~-------~ 229 (339)
T COG1064 166 PGKWVAVVGAG-GLGHMAVQYAKAMGA-EVIAITRSEEKLELAKK-L---GADHV---INSSDSDALEAVKE-------I 229 (339)
T ss_pred CCCEEEEECCc-HHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHH-h---CCcEE---EEcCCchhhHHhHh-------h
Confidence 58899999998 999988888888995 99999999877655433 3 23322 23335555444433 2
Q ss_pred CcEEEEccc
Q 018819 165 LDVLVCNAA 173 (350)
Q Consensus 165 id~lv~~Ag 173 (350)
+|++|.+++
T Consensus 230 ~d~ii~tv~ 238 (339)
T COG1064 230 ADAIIDTVG 238 (339)
T ss_pred CcEEEECCC
Confidence 899999987
|
|
| >KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.86 Score=40.38 Aligned_cols=80 Identities=21% Similarity=0.294 Sum_probs=53.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+|.++||--+.||.|..+++++-..|+ ++|.+..+.++.+.+.+ .|. -+..|.+.++-+.++.+ +. ...+
T Consensus 146 pGhtVlvhaAAGGVGlll~Ql~ra~~a-~tI~~asTaeK~~~ake----nG~---~h~I~y~~eD~v~~V~k-iT-ngKG 215 (336)
T KOG1197|consen 146 PGHTVLVHAAAGGVGLLLCQLLRAVGA-HTIATASTAEKHEIAKE----NGA---EHPIDYSTEDYVDEVKK-IT-NGKG 215 (336)
T ss_pred CCCEEEEEeccccHHHHHHHHHHhcCc-EEEEEeccHHHHHHHHh----cCC---cceeeccchhHHHHHHh-cc-CCCC
Confidence 588999999999999999999999996 88888777666554432 232 22355555544443322 22 2236
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++.-..|.
T Consensus 216 Vd~vyDsvG~ 225 (336)
T KOG1197|consen 216 VDAVYDSVGK 225 (336)
T ss_pred ceeeeccccc
Confidence 8887766654
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.12 Score=48.22 Aligned_cols=79 Identities=19% Similarity=0.213 Sum_probs=51.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.+.+++|+|+ |++|..+++.+...|+.+|++++++.++.+.+ +++ |.. . ..|..+.+ .+++.+ +.. ..+
T Consensus 163 ~g~~vlV~G~-G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~-~~~---ga~-~--~i~~~~~~-~~~~~~-~~~-~~~ 231 (339)
T cd08239 163 GRDTVLVVGA-GPVGLGALMLARALGAEDVIGVDPSPERLELA-KAL---GAD-F--VINSGQDD-VQEIRE-LTS-GAG 231 (339)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHh---CCC-E--EEcCCcch-HHHHHH-HhC-CCC
Confidence 5889999986 89999999999999985488888887665543 334 222 1 23444433 333322 211 236
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|.+.|.
T Consensus 232 ~d~vid~~g~ 241 (339)
T cd08239 232 ADVAIECSGN 241 (339)
T ss_pred CCEEEECCCC
Confidence 9999998874
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.11 Score=47.55 Aligned_cols=80 Identities=24% Similarity=0.277 Sum_probs=51.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
++++++|+|+++++|..+++.+...|+ +|+++.++.++.+.+ .++ +.. .++ |....+..+.+. .... ..+
T Consensus 144 ~~~~vli~g~~~~~g~~~~~~~~~~g~-~v~~~~~~~~~~~~~-~~~---g~~-~~~--~~~~~~~~~~~~-~~~~-~~~ 213 (328)
T cd08268 144 PGDSVLITAASSSVGLAAIQIANAAGA-TVIATTRTSEKRDAL-LAL---GAA-HVI--VTDEEDLVAEVL-RITG-GKG 213 (328)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHH-HHc---CCC-EEE--ecCCccHHHHHH-HHhC-CCC
Confidence 577999999999999999999999995 888888876655544 322 221 222 222222222222 2221 236
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|.++++.|.
T Consensus 214 ~d~vi~~~~~ 223 (328)
T cd08268 214 VDVVFDPVGG 223 (328)
T ss_pred ceEEEECCch
Confidence 9999998774
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.024 Score=40.01 Aligned_cols=32 Identities=38% Similarity=0.540 Sum_probs=20.5
Q ss_pred CEEEEEcCCCchHHH--HHHHHHHcCCcEEEEEecC
Q 018819 87 GSVIITGASSGLGLA--TAKALAETGKWHIIMACRD 120 (350)
Q Consensus 87 ~~~lItGgs~gIG~~--ia~~la~~Ga~~Vi~~~r~ 120 (350)
|++||+|+|+|.|++ ++..| ..|| ..+-++.+
T Consensus 40 K~VLViGaStGyGLAsRIa~aF-g~gA-~TiGV~fE 73 (78)
T PF12242_consen 40 KKVLVIGASTGYGLASRIAAAF-GAGA-DTIGVSFE 73 (78)
T ss_dssp SEEEEES-SSHHHHHHHHHHHH-CC---EEEEEE--
T ss_pred ceEEEEecCCcccHHHHHHHHh-cCCC-CEEEEeec
Confidence 689999999999999 55555 6676 55555443
|
|
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.15 Score=48.14 Aligned_cols=80 Identities=18% Similarity=0.103 Sum_probs=54.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCH-HHHHHHHHHHHHcCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL-DSVRQFVDTFRRSGR 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~-~~v~~~~~~~~~~~g 163 (350)
.+.++||.|+ |+||...++.+...|+.+|+.++++.++.+.+ +++ |.+. + .|..+. +++.+.+.++.. +
T Consensus 186 ~g~~VlV~G~-G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~-~~l---Ga~~-~--i~~~~~~~~~~~~v~~~~~--~ 255 (368)
T cd08300 186 PGSTVAVFGL-GAVGLAVIQGAKAAGASRIIGIDINPDKFELA-KKF---GATD-C--VNPKDHDKPIQQVLVEMTD--G 255 (368)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHc---CCCE-E--EcccccchHHHHHHHHHhC--C
Confidence 4789999975 89999999999899975788898887776544 333 3321 1 243332 234444444433 3
Q ss_pred CCcEEEEcccc
Q 018819 164 PLDVLVCNAAV 174 (350)
Q Consensus 164 ~id~lv~~Ag~ 174 (350)
++|++|.+.|.
T Consensus 256 g~d~vid~~g~ 266 (368)
T cd08300 256 GVDYTFECIGN 266 (368)
T ss_pred CCcEEEECCCC
Confidence 69999998874
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.14 Score=47.28 Aligned_cols=117 Identities=15% Similarity=0.125 Sum_probs=65.0
Q ss_pred EEEEcCCCchHHHHHHHHHHcC-CcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 89 VIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 89 ~lItGgs~gIG~~ia~~la~~G-a~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
+.|+|++|.+|.++|..|+..| +..+++++++. .+....++...-.......+.- + ++ ..+.+..-|+
T Consensus 2 V~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~--a~g~a~DL~~~~~~~~i~~~~~-~-~~-------~~~~~~daDi 70 (312)
T TIGR01772 2 VAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG--AAGVAADLSHIPTAASVKGFSG-E-EG-------LENALKGADV 70 (312)
T ss_pred EEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC--CcEEEchhhcCCcCceEEEecC-C-Cc-------hHHHcCCCCE
Confidence 6899999999999999999887 35789998875 1111111211111111111010 0 01 1122347899
Q ss_pred EEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccC
Q 018819 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (350)
Q Consensus 168 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~ 228 (350)
+|..||.... + ..+. ...+..|+. +.+.+.+.+.+.. +.+.||++|-..
T Consensus 71 vvitaG~~~~--~--g~~R---~dll~~N~~----I~~~i~~~i~~~~-p~~iiivvsNPv 119 (312)
T TIGR01772 71 VVIPAGVPRK--P--GMTR---DDLFNVNAG----IVKDLVAAVAESC-PKAMILVITNPV 119 (312)
T ss_pred EEEeCCCCCC--C--CccH---HHHHHHhHH----HHHHHHHHHHHhC-CCeEEEEecCch
Confidence 9999998532 2 2233 334556654 5555555555443 246777776554
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.077 Score=48.25 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=33.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
.++||.++|.|.++-.|+.++..|.++|| .|.++.|.
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~~ 192 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHSR 192 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeCC
Confidence 57899999999987799999999999998 88888774
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.15 Score=45.88 Aligned_cols=37 Identities=30% Similarity=0.382 Sum_probs=32.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
.+.+..++|.|+ ||+|..+|+.|+..|..++.+++.+
T Consensus 27 kL~~s~VlVvG~-GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 27 LFADAHICVVGI-GGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred HhcCCCEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 467778999986 7999999999999997789998875
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.12 Score=47.33 Aligned_cols=41 Identities=20% Similarity=0.378 Sum_probs=35.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE 125 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~ 125 (350)
.+.+++++|.|. |++|+.+++.|...|+ +|.+++|+.+..+
T Consensus 149 ~l~g~kvlViG~-G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~ 189 (296)
T PRK08306 149 TIHGSNVLVLGF-GRTGMTLARTLKALGA-NVTVGARKSAHLA 189 (296)
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHHHCCC-EEEEEECCHHHHH
Confidence 457899999997 7899999999999997 9999999865533
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.15 Score=43.93 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=33.4
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~ 121 (350)
.+++||.+||.|| |.+|...++.|.+.|+ +|.+++++.
T Consensus 6 l~l~~k~vLVIGg-G~va~~ka~~Ll~~ga-~V~VIs~~~ 43 (202)
T PRK06718 6 IDLSNKRVVIVGG-GKVAGRRAITLLKYGA-HIVVISPEL 43 (202)
T ss_pred EEcCCCEEEEECC-CHHHHHHHHHHHHCCC-eEEEEcCCC
Confidence 4689999999998 8999999999999996 888887753
|
|
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.18 Score=48.43 Aligned_cols=87 Identities=15% Similarity=0.168 Sum_probs=53.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHc--CCcEEEEEecChhHHHHHHHHhccC----CCceEEEEccCCCHHHHHHHHHHH
Q 018819 85 RKGSVIITGASSGLGLATAKALAET--GKWHIIMACRDFLKAERAAKSAGMA----KENYTIMHLDLASLDSVRQFVDTF 158 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~--Ga~~Vi~~~r~~~~~~~~~~~l~~~----~~~v~~~~~Dvs~~~~v~~~~~~~ 158 (350)
.+.+++|.||+|++|...++.+... |+.+|+.++++.++.+.+.+.+... |.... ..|..+.+++.+.+.++
T Consensus 175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~--~i~~~~~~~~~~~v~~~ 252 (410)
T cd08238 175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELL--YVNPATIDDLHATLMEL 252 (410)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEE--EECCCccccHHHHHHHH
Confidence 4679999999999999988876665 4457999999887776554432211 22212 22433322333333333
Q ss_pred HHcCCCCcEEEEcccc
Q 018819 159 RRSGRPLDVLVCNAAV 174 (350)
Q Consensus 159 ~~~~g~id~lv~~Ag~ 174 (350)
.. ...+|.+|.+.|.
T Consensus 253 t~-g~g~D~vid~~g~ 267 (410)
T cd08238 253 TG-GQGFDDVFVFVPV 267 (410)
T ss_pred hC-CCCCCEEEEcCCC
Confidence 22 2358999988763
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.12 Score=37.94 Aligned_cols=36 Identities=31% Similarity=0.534 Sum_probs=31.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEec
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR 119 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r 119 (350)
++++++++|.|. |+.|+.++..|.+.|..+|.+.+|
T Consensus 20 ~~~~~~v~i~G~-G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 20 SLKGKTVVVLGA-GEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcC
Confidence 457889999999 999999999999995468888877
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.18 Score=43.31 Aligned_cols=37 Identities=35% Similarity=0.426 Sum_probs=31.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
.+++.+++|.|+ ||+|.++++.|+..|..++.+++.+
T Consensus 16 ~L~~s~VlviG~-gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 16 KLRSAKVLIIGA-GALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred HHhhCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEECC
Confidence 466778999987 5699999999999999889998875
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.13 Score=47.83 Aligned_cols=117 Identities=16% Similarity=0.131 Sum_probs=65.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccC----CCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA----KENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~----~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
+.+.+.|+|+ |.+|..++..++..|-..|++++.+.+..+....++... +....+ .+ -+|.++ +
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i-~~-~~d~~~----l----- 71 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINI-LG-TNNYED----I----- 71 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEE-Ee-CCCHHH----h-----
Confidence 4557899997 889999999999988337999999865543222222211 111111 11 122221 1
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEecc
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 227 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~ 227 (350)
..-|++|.++|.... + .++. ...+..|. -+.+.+.+.+.+.. +.+.+|++|-.
T Consensus 72 --~~ADiVVitag~~~~--~--g~~r---~dll~~n~----~i~~~i~~~i~~~~-p~a~vivvsNP 124 (319)
T PTZ00117 72 --KDSDVVVITAGVQRK--E--EMTR---EDLLTING----KIMKSVAESVKKYC-PNAFVICVTNP 124 (319)
T ss_pred --CCCCEEEECCCCCCC--C--CCCH---HHHHHHHH----HHHHHHHHHHHHHC-CCeEEEEecCh
Confidence 267999999997532 1 2233 23445555 34455555554433 23556666543
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.21 Score=46.06 Aligned_cols=118 Identities=14% Similarity=0.093 Sum_probs=64.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHcC-CcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 88 SVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~G-a~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
.+.|+|++|.+|.++|..|+.+| +..+++++.+ .++....++...........+. .+ +++ .+.+..-|
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~~~~~i~~~~-~~-~~~-------y~~~~daD 70 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHINTPAKVTGYL-GP-EEL-------KKALKGAD 70 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCCCcceEEEec-CC-Cch-------HHhcCCCC
Confidence 57899999999999999999887 3578999887 2222222222111111111110 10 111 11224789
Q ss_pred EEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccC
Q 018819 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (350)
Q Consensus 167 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~ 228 (350)
++|.+||.... + .++. ...++.|..-.-.+ .+.+.+.. +.+.||++|-..
T Consensus 71 ivvitaG~~~k--~--g~tR---~dll~~N~~i~~~i----~~~i~~~~-p~a~vivvtNPv 120 (310)
T cd01337 71 VVVIPAGVPRK--P--GMTR---DDLFNINAGIVRDL----ATAVAKAC-PKALILIISNPV 120 (310)
T ss_pred EEEEeCCCCCC--C--CCCH---HHHHHHHHHHHHHH----HHHHHHhC-CCeEEEEccCch
Confidence 99999998532 2 2333 33455665444333 44443332 246777776554
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.16 Score=41.07 Aligned_cols=31 Identities=35% Similarity=0.461 Sum_probs=27.5
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 89 VIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 89 ~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
++|.|+ ||+|.++++.|+..|..++.+++.+
T Consensus 2 VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 2 VLLVGL-GGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 678886 8999999999999998789888765
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.18 Score=51.52 Aligned_cols=37 Identities=27% Similarity=0.313 Sum_probs=32.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
.+++.+|+|.|+ ||+|..++..|+..|..++.+++.+
T Consensus 40 kL~~~~VlIvG~-GGlGs~va~~Lar~GVG~l~LvD~D 76 (679)
T PRK14851 40 RLAEAKVAIPGM-GGVGGVHLITMVRTGIGRFHIADFD 76 (679)
T ss_pred HHhcCeEEEECc-CHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 568889999995 8999999999999998889888764
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.12 Score=45.37 Aligned_cols=37 Identities=24% Similarity=0.443 Sum_probs=33.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCc--EEEEEecC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKW--HIIMACRD 120 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~--~Vi~~~r~ 120 (350)
.+++++++|.|+ ||.|+++++.|.+.|+. +|.+++|+
T Consensus 22 ~l~~~rvlvlGA-GgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 22 KIEEVKIVINGA-GAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CccCCEEEEECc-hHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 467889999998 89999999999999987 89999998
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.072 Score=42.26 Aligned_cols=86 Identities=24% Similarity=0.364 Sum_probs=52.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEE-ecChhHHHHHHHHhccC--------CCceEEEEccCCCHHHHHHHHHHH
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMA-CRDFLKAERAAKSAGMA--------KENYTIMHLDLASLDSVRQFVDTF 158 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~-~r~~~~~~~~~~~l~~~--------~~~v~~~~~Dvs~~~~v~~~~~~~ 158 (350)
++-|.|+ |-+|.++++.|.+.|. .|..+ +|+.+..+.+...+... -.+...+-+-+.| +.+..+.+++
T Consensus 12 ~I~iIGa-GrVG~~La~aL~~ag~-~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpD-daI~~va~~L 88 (127)
T PF10727_consen 12 KIGIIGA-GRVGTALARALARAGH-EVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPD-DAIAEVAEQL 88 (127)
T ss_dssp EEEEECT-SCCCCHHHHHHHHTTS-EEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-C-CHHHHHHHHH
T ss_pred EEEEECC-CHHHHHHHHHHHHCCC-eEEEEEeCCcccccccccccccccccccccccccCCEEEEEech-HHHHHHHHHH
Confidence 6888887 8899999999999994 66554 67665555554443210 1123344445555 3788888888
Q ss_pred HHc--CCCCcEEEEccccCC
Q 018819 159 RRS--GRPLDVLVCNAAVYL 176 (350)
Q Consensus 159 ~~~--~g~id~lv~~Ag~~~ 176 (350)
... ..+=.++||+.|...
T Consensus 89 a~~~~~~~g~iVvHtSGa~~ 108 (127)
T PF10727_consen 89 AQYGAWRPGQIVVHTSGALG 108 (127)
T ss_dssp HCC--S-TT-EEEES-SS--
T ss_pred HHhccCCCCcEEEECCCCCh
Confidence 765 334468999999753
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.21 Score=47.49 Aligned_cols=80 Identities=23% Similarity=0.225 Sum_probs=52.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCH-HHHHHHHHHHHHcCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL-DSVRQFVDTFRRSGR 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~-~~v~~~~~~~~~~~g 163 (350)
++.++||.|+ |+||..+++.....|+..|+.++++.++.+.+ +++ |... + .|..+. ++..+.+.++.. +
T Consensus 193 ~g~~VlV~G~-G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a-~~l---Ga~~-~--i~~~~~~~~~~~~v~~~~~--~ 262 (378)
T PLN02827 193 KGSSVVIFGL-GTVGLSVAQGAKLRGASQIIGVDINPEKAEKA-KTF---GVTD-F--INPNDLSEPIQQVIKRMTG--G 262 (378)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH-HHc---CCcE-E--EcccccchHHHHHHHHHhC--C
Confidence 5789999985 99999999988889975677777776665433 333 3321 2 233332 234444444332 3
Q ss_pred CCcEEEEcccc
Q 018819 164 PLDVLVCNAAV 174 (350)
Q Consensus 164 ~id~lv~~Ag~ 174 (350)
.+|++|.+.|.
T Consensus 263 g~d~vid~~G~ 273 (378)
T PLN02827 263 GADYSFECVGD 273 (378)
T ss_pred CCCEEEECCCC
Confidence 69999999884
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.081 Score=47.87 Aligned_cols=45 Identities=22% Similarity=0.210 Sum_probs=39.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHh
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA 131 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l 131 (350)
+++++|.|+ ||-+++++..|++.|+.+|.+++|+.++.+++.+.+
T Consensus 122 ~~~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~ 166 (272)
T PRK12550 122 DLVVALRGS-GGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELY 166 (272)
T ss_pred CCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHh
Confidence 468899986 899999999999999878999999988887776654
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.2 Score=39.51 Aligned_cols=77 Identities=21% Similarity=0.207 Sum_probs=51.8
Q ss_pred EEEEEcCCCchHHHHHHHHHH-cCCcEEEEEecCh----------------------hHHHHHHHHhccCCCceEEEEcc
Q 018819 88 SVIITGASSGLGLATAKALAE-TGKWHIIMACRDF----------------------LKAERAAKSAGMAKENYTIMHLD 144 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~-~Ga~~Vi~~~r~~----------------------~~~~~~~~~l~~~~~~v~~~~~D 144 (350)
.++|.|++|-+|+.+++.+.+ .+..-+..+.|+. ..+++..+. .+ +..|
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~-----~D---VvID 73 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEE-----AD---VVID 73 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH------S---EEEE
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhccc-----CC---EEEE
Confidence 589999999999999999999 5632344455654 122222221 12 4579
Q ss_pred CCCHHHHHHHHHHHHHcCCCCcEEEEcccc
Q 018819 145 LASLDSVRQFVDTFRRSGRPLDVLVCNAAV 174 (350)
Q Consensus 145 vs~~~~v~~~~~~~~~~~g~id~lv~~Ag~ 174 (350)
+|.++.+...++.+.+. ++..++-..|.
T Consensus 74 fT~p~~~~~~~~~~~~~--g~~~ViGTTG~ 101 (124)
T PF01113_consen 74 FTNPDAVYDNLEYALKH--GVPLVIGTTGF 101 (124)
T ss_dssp ES-HHHHHHHHHHHHHH--T-EEEEE-SSS
T ss_pred cCChHHhHHHHHHHHhC--CCCEEEECCCC
Confidence 99999999999988876 67788777665
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.18 Score=48.25 Aligned_cols=37 Identities=32% Similarity=0.344 Sum_probs=32.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
.+++.+|+|.|+ ||+|..+++.|+..|..++.+++.+
T Consensus 35 ~L~~~~VlivG~-GGlG~~va~~La~~Gvg~l~lvD~D 71 (390)
T PRK07411 35 RLKAASVLCIGT-GGLGSPLLLYLAAAGIGRIGIVDFD 71 (390)
T ss_pred HHhcCcEEEECC-CHHHHHHHHHHHHcCCCEEEEECCC
Confidence 567789999987 7999999999999998899998774
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.17 Score=44.66 Aligned_cols=37 Identities=32% Similarity=0.448 Sum_probs=32.5
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
.+.+.+++|.|. ||+|..+++.|+..|..++++++.+
T Consensus 8 ~L~~~~VlVvG~-GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 8 KLRNAHVAVVGL-GGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred HHhCCCEEEECC-CHHHHHHHHHHHHcCCCEEEEECCC
Confidence 467778999986 7999999999999998899998875
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.22 Score=43.99 Aligned_cols=32 Identities=31% Similarity=0.373 Sum_probs=27.9
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh
Q 018819 89 VIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (350)
Q Consensus 89 ~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~ 121 (350)
++|.| .||||.++++.|+..|..++.+++.+.
T Consensus 2 VlvvG-~GGlG~eilk~La~~Gvg~i~ivD~D~ 33 (234)
T cd01484 2 VLLVG-AGGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred EEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 67777 589999999999999988999988864
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.35 Score=44.95 Aligned_cols=114 Identities=12% Similarity=0.034 Sum_probs=64.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHcC-Cc-----EEEEEecCh--hHHHHHHHHhccCC----CceEEEEccCCCHHHHHHHH
Q 018819 88 SVIITGASSGLGLATAKALAETG-KW-----HIIMACRDF--LKAERAAKSAGMAK----ENYTIMHLDLASLDSVRQFV 155 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~G-a~-----~Vi~~~r~~--~~~~~~~~~l~~~~----~~v~~~~~Dvs~~~~v~~~~ 155 (350)
.+.|+|++|.+|..+|..|...| +. .+++.+.+. +.++....++.... .++.. .. .+.+
T Consensus 5 KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i-~~--~~~~------ 75 (323)
T TIGR01759 5 RVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVA-TT--DPEE------ 75 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEE-ec--ChHH------
Confidence 58999999999999999999887 33 688888854 22333333332111 01111 10 1111
Q ss_pred HHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEec
Q 018819 156 DTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (350)
Q Consensus 156 ~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS 226 (350)
....-|++|..||.... + .++.. ..+..|+. +.+.+.+.+.+...+.+.++++|-
T Consensus 76 -----~~~daDvVVitAG~~~k--~--g~tR~---dll~~Na~----i~~~i~~~i~~~~~~~~iiivvsN 130 (323)
T TIGR01759 76 -----AFKDVDAALLVGAFPRK--P--GMERA---DLLSKNGK----IFKEQGKALNKVAKKDVKVLVVGN 130 (323)
T ss_pred -----HhCCCCEEEEeCCCCCC--C--CCcHH---HHHHHHHH----HHHHHHHHHHhhCCCCeEEEEeCC
Confidence 12368999999998532 2 23443 34555654 445555555444322456666653
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.12 Score=46.43 Aligned_cols=79 Identities=22% Similarity=0.191 Sum_probs=49.4
Q ss_pred EEEEcCCCchHHHHHHHHHHcC--C-cEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 89 VIITGASSGLGLATAKALAETG--K-WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 89 ~lItGgs~gIG~~ia~~la~~G--a-~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
+.|+|++|.+|..++..|+..| . ..|++++.+++.++....+++..-... ....++-.++..+.+ ..-
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~--~~~~i~~~~d~~~~~-------~~a 71 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL--ADIKVSITDDPYEAF-------KDA 71 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc--cCcEEEECCchHHHh-------CCC
Confidence 4689998899999999999887 2 489999988766666555553221111 011111111112222 268
Q ss_pred cEEEEccccCC
Q 018819 166 DVLVCNAAVYL 176 (350)
Q Consensus 166 d~lv~~Ag~~~ 176 (350)
|++|..+|...
T Consensus 72 DiVv~t~~~~~ 82 (263)
T cd00650 72 DVVIITAGVGR 82 (263)
T ss_pred CEEEECCCCCC
Confidence 99999999854
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >cd08244 MDR_enoyl_red Possible enoyl reductase | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.19 Score=46.09 Aligned_cols=80 Identities=18% Similarity=0.223 Sum_probs=52.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.+.+++|+|+++++|..+++.+...|+ +|+.+.++.++.+.+ +++ +.. .+ .|..+.+..+.+.+.. ...+
T Consensus 142 ~~~~vlI~g~~~~~g~~~~~la~~~g~-~v~~~~~~~~~~~~~-~~~---g~~-~~--~~~~~~~~~~~~~~~~--~~~~ 211 (324)
T cd08244 142 PGDVVLVTAAAGGLGSLLVQLAKAAGA-TVVGAAGGPAKTALV-RAL---GAD-VA--VDYTRPDWPDQVREAL--GGGG 211 (324)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH-HHc---CCC-EE--EecCCccHHHHHHHHc--CCCC
Confidence 477999999999999999999999996 888888887665544 333 222 12 2333333333332211 1235
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|.++++.|.
T Consensus 212 ~d~vl~~~g~ 221 (324)
T cd08244 212 VTVVLDGVGG 221 (324)
T ss_pred ceEEEECCCh
Confidence 9999998763
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr |
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.27 Score=46.49 Aligned_cols=80 Identities=20% Similarity=0.161 Sum_probs=52.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCH-HHHHHHHHHHHHcCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL-DSVRQFVDTFRRSGR 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~-~~v~~~~~~~~~~~g 163 (350)
.+.+++|.|+ |++|..+++.....|+.+|+.++++.++.+.+ +++ |... + .|..+. +++.+.+.++.. +
T Consensus 187 ~g~~VlV~G~-g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~-~~~---Ga~~-~--i~~~~~~~~~~~~v~~~~~--~ 256 (369)
T cd08301 187 KGSTVAIFGL-GAVGLAVAEGARIRGASRIIGVDLNPSKFEQA-KKF---GVTE-F--VNPKDHDKPVQEVIAEMTG--G 256 (369)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHc---CCce-E--EcccccchhHHHHHHHHhC--C
Confidence 5789999985 89999999988889965788888887665544 333 3221 1 233321 234444444433 2
Q ss_pred CCcEEEEcccc
Q 018819 164 PLDVLVCNAAV 174 (350)
Q Consensus 164 ~id~lv~~Ag~ 174 (350)
.+|+++.+.|.
T Consensus 257 ~~d~vid~~G~ 267 (369)
T cd08301 257 GVDYSFECTGN 267 (369)
T ss_pred CCCEEEECCCC
Confidence 69999998773
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.1 Score=48.28 Aligned_cols=115 Identities=19% Similarity=0.123 Sum_probs=64.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC-cEEEEEecCh--hHHHHHHHHhc----cCCCceEEEEccCC-CHHHHHHHHHHHH
Q 018819 88 SVIITGASSGLGLATAKALAETGK-WHIIMACRDF--LKAERAAKSAG----MAKENYTIMHLDLA-SLDSVRQFVDTFR 159 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga-~~Vi~~~r~~--~~~~~~~~~l~----~~~~~v~~~~~Dvs-~~~~v~~~~~~~~ 159 (350)
.+.|+|++|.+|..++..|+..|. ..|++++++. +.++.....+. ..+.... +..+ |.+ .
T Consensus 2 kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~---i~~~~d~~---~------ 69 (309)
T cd05294 2 KVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAE---IKISSDLS---D------ 69 (309)
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcE---EEECCCHH---H------
Confidence 689999999999999999999983 2588999853 33322222221 1111111 1111 211 1
Q ss_pred HcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccC
Q 018819 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~ 228 (350)
...-|++|.++|.... ...+.. ..++.|+.-...+.+.+.+. . +.+.+|++++..
T Consensus 70 --l~~aDiViitag~p~~----~~~~r~---dl~~~n~~i~~~~~~~i~~~----~-~~~~viv~~npv 124 (309)
T cd05294 70 --VAGSDIVIITAGVPRK----EGMSRL---DLAKKNAKIVKKYAKQIAEF----A-PDTKILVVTNPV 124 (309)
T ss_pred --hCCCCEEEEecCCCCC----CCCCHH---HHHHHHHHHHHHHHHHHHHH----C-CCeEEEEeCCch
Confidence 1368999999997432 123322 33445554444444443332 2 146788887654
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.23 Score=46.69 Aligned_cols=80 Identities=25% Similarity=0.265 Sum_probs=51.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.+.++||.|+ |++|...++.....|+.+|+.++++.++.+.+ +++ |.+ .+ .|..+.+..+. +.+... ..+
T Consensus 176 ~g~~VlV~G~-g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~-~~~---Ga~-~~--i~~~~~~~~~~-i~~~~~-~~g 245 (358)
T TIGR03451 176 RGDSVAVIGC-GGVGDAAIAGAALAGASKIIAVDIDDRKLEWA-REF---GAT-HT--VNSSGTDPVEA-IRALTG-GFG 245 (358)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHc---CCc-eE--EcCCCcCHHHH-HHHHhC-CCC
Confidence 5789999985 99999999988889976688888887665544 333 322 12 23333322222 222221 125
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|.+.|.
T Consensus 246 ~d~vid~~g~ 255 (358)
T TIGR03451 246 ADVVIDAVGR 255 (358)
T ss_pred CCEEEECCCC
Confidence 8999998874
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.23 Score=47.52 Aligned_cols=37 Identities=32% Similarity=0.407 Sum_probs=32.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
.+.+.+++|.|+ ||+|..+++.|+..|..++.+++.+
T Consensus 39 ~L~~~~VlviG~-GGlGs~va~~La~~Gvg~i~lvD~D 75 (392)
T PRK07878 39 RLKNARVLVIGA-GGLGSPTLLYLAAAGVGTLGIVEFD 75 (392)
T ss_pred HHhcCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCC
Confidence 567788999987 7999999999999998889988865
|
|
| >cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2 | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.18 Score=46.40 Aligned_cols=80 Identities=15% Similarity=0.096 Sum_probs=51.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.+.+++|.|+++++|.++++.....|+ +++.+.++.++.+.+.+ + |.+ .++ |..+.+ ..+.+.+... ..+
T Consensus 139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~-~---g~~-~~~--~~~~~~-~~~~i~~~~~-~~~ 208 (324)
T cd08292 139 PGQWLIQNAAGGAVGKLVAMLAAARGI-NVINLVRRDAGVAELRA-L---GIG-PVV--STEQPG-WQDKVREAAG-GAP 208 (324)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHh-c---CCC-EEE--cCCCch-HHHHHHHHhC-CCC
Confidence 578999999999999999999999997 78888777666554433 2 322 122 223322 2222333222 136
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|.++.+.|.
T Consensus 209 ~d~v~d~~g~ 218 (324)
T cd08292 209 ISVALDSVGG 218 (324)
T ss_pred CcEEEECCCC
Confidence 9999998774
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.19 Score=48.85 Aligned_cols=76 Identities=22% Similarity=0.250 Sum_probs=56.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
...+.++|.|+ |.+|+.+++.|.++| ..|++++++++..+...+.. ..+.++.+|.++.+.++++- ..
T Consensus 229 ~~~~~iiIiG~-G~~g~~l~~~L~~~~-~~v~vid~~~~~~~~~~~~~----~~~~~i~gd~~~~~~L~~~~------~~ 296 (453)
T PRK09496 229 KPVKRVMIVGG-GNIGYYLAKLLEKEG-YSVKLIERDPERAEELAEEL----PNTLVLHGDGTDQELLEEEG------ID 296 (453)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHC----CCCeEEECCCCCHHHHHhcC------Cc
Confidence 34678999998 999999999999999 58999999987766655432 24567889999887765431 23
Q ss_pred CCcEEEEc
Q 018819 164 PLDVLVCN 171 (350)
Q Consensus 164 ~id~lv~~ 171 (350)
..|.+|.+
T Consensus 297 ~a~~vi~~ 304 (453)
T PRK09496 297 EADAFIAL 304 (453)
T ss_pred cCCEEEEC
Confidence 56776644
|
|
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.14 Score=51.32 Aligned_cols=37 Identities=27% Similarity=0.341 Sum_probs=33.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
.+++.+++|.|+ ||||..+|+.|+..|..++++++.+
T Consensus 335 kL~~~kVLIvGa-GGLGs~VA~~La~~GVg~ItlVD~D 371 (664)
T TIGR01381 335 RYSQLKVLLLGA-GTLGCNVARCLIGWGVRHITFVDNG 371 (664)
T ss_pred HHhcCeEEEECC-cHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 457889999997 8999999999999999999999875
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.22 Score=48.36 Aligned_cols=41 Identities=37% Similarity=0.534 Sum_probs=34.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHH
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK 129 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~ 129 (350)
++.|.||+|++|.++++.|.+.| ..|++++|+.+...+...
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G-~~V~v~~r~~~~~~~~a~ 42 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKG-FEVIVTGRDPKKGKEVAK 42 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCC-CEEEEEECChHHHHHHHH
Confidence 58999999999999999999999 589999998766544433
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.48 Score=43.81 Aligned_cols=114 Identities=16% Similarity=0.123 Sum_probs=66.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHcC-CcEEEEEecChhHHHHHHHHhccCC---CceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 88 SVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAK---ENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~G-a~~Vi~~~r~~~~~~~~~~~l~~~~---~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
.+.|+|+ |.+|..+|..|+..| +..+++++.+.+.++....++.... ....+..+ +|.++ +.
T Consensus 5 Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~--~dy~~-----------~~ 70 (312)
T cd05293 5 KVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEAD--KDYSV-----------TA 70 (312)
T ss_pred EEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEEC--CCHHH-----------hC
Confidence 6889996 999999999999887 3579999987765554444443211 11122211 22221 12
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEecc
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 227 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~ 227 (350)
..|++|.+||.... + .++..+ .+..|. -+.+.+.+.+.+.. +.+.++++|-.
T Consensus 71 ~adivvitaG~~~k--~--g~~R~d---ll~~N~----~i~~~~~~~i~~~~-p~~~vivvsNP 122 (312)
T cd05293 71 NSKVVIVTAGARQN--E--GESRLD---LVQRNV----DIFKGIIPKLVKYS-PNAILLVVSNP 122 (312)
T ss_pred CCCEEEECCCCCCC--C--CCCHHH---HHHHHH----HHHHHHHHHHHHhC-CCcEEEEccCh
Confidence 68999999998532 1 234433 344443 34455555554443 24677777643
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.25 Score=46.78 Aligned_cols=79 Identities=18% Similarity=0.175 Sum_probs=51.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.+.+++|.|+ |+||..+++.+...|+.+|+.+++++++.+.+ +++ |... ..|..+.+..+. +.++.. ++
T Consensus 191 ~g~~VlV~G~-G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a-~~~---Ga~~---~i~~~~~~~~~~-i~~~~~--~g 259 (371)
T cd08281 191 PGQSVAVVGL-GGVGLSALLGAVAAGASQVVAVDLNEDKLALA-REL---GATA---TVNAGDPNAVEQ-VRELTG--GG 259 (371)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHH-HHc---CCce---EeCCCchhHHHH-HHHHhC--CC
Confidence 5789999985 89999999888889975788888887665543 333 3221 234333332222 222222 36
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|.+.|.
T Consensus 260 ~d~vid~~G~ 269 (371)
T cd08281 260 VDYAFEMAGS 269 (371)
T ss_pred CCEEEECCCC
Confidence 9999999874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.32 Score=45.76 Aligned_cols=80 Identities=21% Similarity=0.305 Sum_probs=51.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.+.+++|+|+ |-||+..+..+...|+.+|++.++++++++.+.+... ... + .+....+.... +.++. ....
T Consensus 168 ~~~~V~V~Ga-GpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g---~~~--~-~~~~~~~~~~~-~~~~t-~g~g 238 (350)
T COG1063 168 PGGTVVVVGA-GPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGG---ADV--V-VNPSEDDAGAE-ILELT-GGRG 238 (350)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCC---CeE--e-ecCccccHHHH-HHHHh-CCCC
Confidence 3448999986 8999999988889999899999999888876655332 111 1 11111112222 11211 1126
Q ss_pred CcEEEEccc
Q 018819 165 LDVLVCNAA 173 (350)
Q Consensus 165 id~lv~~Ag 173 (350)
.|.+|-++|
T Consensus 239 ~D~vie~~G 247 (350)
T COG1063 239 ADVVIEAVG 247 (350)
T ss_pred CCEEEECCC
Confidence 999999999
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.14 Score=40.94 Aligned_cols=56 Identities=21% Similarity=0.272 Sum_probs=44.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHH
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~ 149 (350)
+++.+++.|.+ .|.++|..|++.| ..|+.++.++...+.+.+. .+.++.+|+.+++
T Consensus 16 ~~~kileIG~G--fG~~vA~~L~~~G-~~ViaIDi~~~aV~~a~~~------~~~~v~dDlf~p~ 71 (134)
T PRK04148 16 KNKKIVELGIG--FYFKVAKKLKESG-FDVIVIDINEKAVEKAKKL------GLNAFVDDLFNPN 71 (134)
T ss_pred cCCEEEEEEec--CCHHHHHHHHHCC-CEEEEEECCHHHHHHHHHh------CCeEEECcCCCCC
Confidence 34679999986 7888999999999 5999999998766555332 3678889998765
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.22 Score=46.27 Aligned_cols=114 Identities=13% Similarity=0.034 Sum_probs=64.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC-c-----EEEEEecChh--HHHHHHHHhccCC----CceEEEEccCCCHHHHHHHH
Q 018819 88 SVIITGASSGLGLATAKALAETGK-W-----HIIMACRDFL--KAERAAKSAGMAK----ENYTIMHLDLASLDSVRQFV 155 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga-~-----~Vi~~~r~~~--~~~~~~~~l~~~~----~~v~~~~~Dvs~~~~v~~~~ 155 (350)
.+.|+|++|.+|..+|..|+..|. . .+++.+.+.. .++....++.... .++.+. . .+
T Consensus 6 KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~-~--~~-------- 74 (326)
T PRK05442 6 RVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT-D--DP-------- 74 (326)
T ss_pred EEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe-c--Ch--------
Confidence 689999999999999999998773 3 6888887532 2222222221110 011111 1 11
Q ss_pred HHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEec
Q 018819 156 DTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (350)
Q Consensus 156 ~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS 226 (350)
.+.+..-|++|..||.... + ..+.. ..+..|. .+.+.+.+.+.+...+.+.+|++|-
T Consensus 75 ---y~~~~daDiVVitaG~~~k--~--g~tR~---dll~~Na----~i~~~i~~~i~~~~~~~~iiivvsN 131 (326)
T PRK05442 75 ---NVAFKDADVALLVGARPRG--P--GMERK---DLLEANG----AIFTAQGKALNEVAARDVKVLVVGN 131 (326)
T ss_pred ---HHHhCCCCEEEEeCCCCCC--C--CCcHH---HHHHHHH----HHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 1122468999999997432 2 23433 3455554 3555666666553212457777664
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.43 Score=44.69 Aligned_cols=41 Identities=24% Similarity=0.266 Sum_probs=35.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHH
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA 127 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~ 127 (350)
.+.+++|.|+ |+||..+++.+...|+ +|++++++.++.+.+
T Consensus 166 ~g~~VlV~G~-G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~ 206 (349)
T TIGR03201 166 KGDLVIVIGA-GGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMM 206 (349)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHH
Confidence 5789999999 9999999999999997 788888887776544
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.55 Score=42.99 Aligned_cols=84 Identities=18% Similarity=0.129 Sum_probs=61.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.|.++||.|+ |-||...-...-..||.+|++++-.+.+++.+.+ + |.++....-.-.+.+.+.+.++...... .
T Consensus 169 ~Gs~vLV~GA-GPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~~~~~~~~~~~~~~~~~~v~~~~g~~-~ 242 (354)
T KOG0024|consen 169 KGSKVLVLGA-GPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GATVTDPSSHKSSPQELAELVEKALGKK-Q 242 (354)
T ss_pred cCCeEEEECC-cHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCeEEeeccccccHHHHHHHHHhhcccc-C
Confidence 4778999997 7999999999999999999999998888776655 4 4444333333334556666555554322 4
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|+.|.|.|.
T Consensus 243 ~d~~~dCsG~ 252 (354)
T KOG0024|consen 243 PDVTFDCSGA 252 (354)
T ss_pred CCeEEEccCc
Confidence 9999999986
|
|
| >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.3 Score=44.50 Aligned_cols=31 Identities=32% Similarity=0.463 Sum_probs=27.2
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 89 VIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 89 ~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
++|.| .||||.++++.|+..|..++.+++.+
T Consensus 2 VlVVG-aGGlG~eilknLal~Gvg~I~IvD~D 32 (291)
T cd01488 2 ILVIG-AGGLGCELLKNLALSGFRNIHVIDMD 32 (291)
T ss_pred EEEEC-CCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 67787 58999999999999998899988764
|
UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.44 Score=43.16 Aligned_cols=78 Identities=24% Similarity=0.250 Sum_probs=48.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.+++++|.|+ |+||..+++.+...|+.+|++++++.++.+. .+++ |... + .|..+. .+.+.++.. ...
T Consensus 120 ~g~~VlV~G~-G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~-a~~~---Ga~~-~--i~~~~~---~~~~~~~~~-~~g 187 (280)
T TIGR03366 120 KGRRVLVVGA-GMLGLTAAAAAAAAGAARVVAADPSPDRREL-ALSF---GATA-L--AEPEVL---AERQGGLQN-GRG 187 (280)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHH-HHHc---CCcE-e--cCchhh---HHHHHHHhC-CCC
Confidence 6789999986 8999999998888997558888777666543 3333 3221 1 222221 122222221 235
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|.+.|.
T Consensus 188 ~d~vid~~G~ 197 (280)
T TIGR03366 188 VDVALEFSGA 197 (280)
T ss_pred CCEEEECCCC
Confidence 8999998874
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.74 Score=38.03 Aligned_cols=43 Identities=26% Similarity=0.343 Sum_probs=32.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA 127 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~ 127 (350)
.+.||+++|.|= |-+|+.+|+.|...|+ +|+++..++-+.-++
T Consensus 20 ~l~Gk~vvV~GY-G~vG~g~A~~lr~~Ga-~V~V~e~DPi~alqA 62 (162)
T PF00670_consen 20 MLAGKRVVVIGY-GKVGKGIARALRGLGA-RVTVTEIDPIRALQA 62 (162)
T ss_dssp --TTSEEEEE---SHHHHHHHHHHHHTT--EEEEE-SSHHHHHHH
T ss_pred eeCCCEEEEeCC-CcccHHHHHHHhhCCC-EEEEEECChHHHHHh
Confidence 568999999985 8999999999999997 999999987554433
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.31 Score=46.86 Aligned_cols=40 Identities=23% Similarity=0.319 Sum_probs=34.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKA 124 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~ 124 (350)
.+.|++++|.|. |.||+.+|+.+...|+ +|++++++..+.
T Consensus 209 ~l~Gk~VlViG~-G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra 248 (425)
T PRK05476 209 LIAGKVVVVAGY-GDVGKGCAQRLRGLGA-RVIVTEVDPICA 248 (425)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEcCCchhh
Confidence 368999999997 7999999999999997 899998886554
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.13 E-value=2.2 Score=39.64 Aligned_cols=123 Identities=11% Similarity=0.077 Sum_probs=67.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHh----ccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA----GMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l----~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
+.+.+.|.|+ |.+|..+|..++..|...|++++.+++........+ ...+....+.. .+|.++
T Consensus 5 ~~~KI~IIGa-G~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~--~~d~~~---------- 71 (321)
T PTZ00082 5 KRRKISLIGS-GNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIG--TNNYED---------- 71 (321)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEE--CCCHHH----------
Confidence 4468999995 889999999999999436999999876432111111 11122222221 122221
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~ 228 (350)
...-|++|+++|.....+ ..+.+++. ...+..|+ .+.+.+.+.+.+.. +.+.+|++|-..
T Consensus 72 -l~~aDiVI~tag~~~~~~-~~~~~~~r-~~~l~~n~----~i~~~i~~~i~~~~-p~a~~iv~sNP~ 131 (321)
T PTZ00082 72 -IAGSDVVIVTAGLTKRPG-KSDKEWNR-DDLLPLNA----KIMDEVAEGIKKYC-PNAFVIVITNPL 131 (321)
T ss_pred -hCCCCEEEECCCCCCCCC-CCcCCCCH-HHHHHHHH----HHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 126899999999854311 11111111 33344453 34555555555443 234666665433
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.04 E-value=1.5 Score=40.41 Aligned_cols=113 Identities=19% Similarity=0.135 Sum_probs=67.5
Q ss_pred EEEEcCCCchHHHHHHHHHHcCC-cEEEEEecChhHHHHHHHHhccC----C-CceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 89 VIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMA----K-ENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 89 ~lItGgs~gIG~~ia~~la~~Ga-~~Vi~~~r~~~~~~~~~~~l~~~----~-~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
+.|.|+ |.+|..+|..|+.+|. ..+++++.+.+..+....++... + .++..... |.+ .+
T Consensus 2 i~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~---~y~-------~~---- 66 (307)
T cd05290 2 LVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAG---DYD-------DC---- 66 (307)
T ss_pred EEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEEC---CHH-------Hh----
Confidence 578887 9999999999998873 57999998876655544444331 1 13333322 222 12
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEec
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS 226 (350)
..-|++|..||.... + .++.+ -...+..| ..+.+.+.+.+.+.. +.+.+|.+|-
T Consensus 67 ~~aDivvitaG~~~k--p--g~tr~-R~dll~~N----~~I~~~i~~~i~~~~-p~~i~ivvsN 120 (307)
T cd05290 67 ADADIIVITAGPSID--P--GNTDD-RLDLAQTN----AKIIREIMGNITKVT-KEAVIILITN 120 (307)
T ss_pred CCCCEEEECCCCCCC--C--CCCch-HHHHHHHH----HHHHHHHHHHHHHhC-CCeEEEEecC
Confidence 368999999998532 2 23311 12234444 345666666666554 2456666543
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.47 Score=45.87 Aligned_cols=113 Identities=13% Similarity=0.048 Sum_probs=69.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHc-------C-CcEEEEEecChhHHHHHHHHhccCC----CceEEEEccCCCHHHHHHHH
Q 018819 88 SVIITGASSGLGLATAKALAET-------G-KWHIIMACRDFLKAERAAKSAGMAK----ENYTIMHLDLASLDSVRQFV 155 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~-------G-a~~Vi~~~r~~~~~~~~~~~l~~~~----~~v~~~~~Dvs~~~~v~~~~ 155 (350)
.+.|+|++|.+|.++|..|+.. | +..+++.+++.+.++....++...- .++.+. . .+.++
T Consensus 102 KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~-~--~~ye~----- 173 (444)
T PLN00112 102 NVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIG-I--DPYEV----- 173 (444)
T ss_pred EEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEe-c--CCHHH-----
Confidence 6899999999999999999987 5 2378999998877766655554321 122111 1 12222
Q ss_pred HHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhc-CCCCCCeEEEEec
Q 018819 156 DTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQ-SDYPSKRLIIVGS 226 (350)
Q Consensus 156 ~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~-~~~~~g~iV~vSS 226 (350)
+..-|++|..||.... + .++.. ..++.|+. +.+...+.+.+ .. +.+.||++|-
T Consensus 174 ------~kdaDiVVitAG~prk--p--G~tR~---dLl~~N~~----I~k~i~~~I~~~a~-p~~ivIVVsN 227 (444)
T PLN00112 174 ------FQDAEWALLIGAKPRG--P--GMERA---DLLDINGQ----IFAEQGKALNEVAS-RNVKVIVVGN 227 (444)
T ss_pred ------hCcCCEEEECCCCCCC--C--CCCHH---HHHHHHHH----HHHHHHHHHHHhcC-CCeEEEEcCC
Confidence 2368999999998432 2 23433 34555643 44555555555 22 2456776663
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.5 Score=43.45 Aligned_cols=113 Identities=18% Similarity=0.127 Sum_probs=65.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCc-EEEEEecChhHHHHHHHHhccC----CCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 88 SVIITGASSGLGLATAKALAETGKW-HIIMACRDFLKAERAAKSAGMA----KENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~-~Vi~~~r~~~~~~~~~~~l~~~----~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+.|+|+ |++|.++|..|+.++.. .+++++.+++..+-...++.+. +.. ..+..| .+.++ +
T Consensus 2 KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~-~~i~~~-~~y~~-----------~ 67 (313)
T COG0039 2 KVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSD-VKITGD-GDYED-----------L 67 (313)
T ss_pred eEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCc-eEEecC-CChhh-----------h
Confidence 5789999 99999999999988855 8999999855444433333221 111 112222 22221 2
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEec
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS 226 (350)
..-|++|-.||..+.+ .++..+ .+..|..=. +.+.+.+.+... .+.|+.++-
T Consensus 68 ~~aDiVvitAG~prKp----GmtR~D---Ll~~Na~I~----~~i~~~i~~~~~-d~ivlVvtN 119 (313)
T COG0039 68 KGADIVVITAGVPRKP----GMTRLD---LLEKNAKIV----KDIAKAIAKYAP-DAIVLVVTN 119 (313)
T ss_pred cCCCEEEEeCCCCCCC----CCCHHH---HHHhhHHHH----HHHHHHHHhhCC-CeEEEEecC
Confidence 3689999999986432 244443 455565433 444444444332 345555543
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.21 Score=41.36 Aligned_cols=84 Identities=23% Similarity=0.266 Sum_probs=56.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhcc-------CCCceEEEEccCCCHHHHHHHHHH--H
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-------AKENYTIMHLDLASLDSVRQFVDT--F 158 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~-------~~~~v~~~~~Dvs~~~~v~~~~~~--~ 158 (350)
++-+.|- |-+|..+|+.|+++| +.|.+.+|+.++.+++.+.--. .-.+..++..=+.+.+++++++.. +
T Consensus 3 ~Ig~IGl-G~mG~~~a~~L~~~g-~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i 80 (163)
T PF03446_consen 3 KIGFIGL-GNMGSAMARNLAKAG-YEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENI 80 (163)
T ss_dssp EEEEE---SHHHHHHHHHHHHTT-TEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTH
T ss_pred EEEEEch-HHHHHHHHHHHHhcC-CeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHH
Confidence 5677775 899999999999999 6999999998887776543100 001234555567888889988887 6
Q ss_pred HHcCCCCcEEEEccc
Q 018819 159 RRSGRPLDVLVCNAA 173 (350)
Q Consensus 159 ~~~~g~id~lv~~Ag 173 (350)
.....+=+++|++.-
T Consensus 81 ~~~l~~g~iiid~sT 95 (163)
T PF03446_consen 81 LAGLRPGKIIIDMST 95 (163)
T ss_dssp GGGS-TTEEEEE-SS
T ss_pred hhccccceEEEecCC
Confidence 655544556665543
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.17 Score=44.23 Aligned_cols=41 Identities=37% Similarity=0.494 Sum_probs=35.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHH
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK 129 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~ 129 (350)
++.|+||+|.+|.++++.|++.| +.|++.+|+.++.+....
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r~~~~~~~l~~ 42 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGSRDLEKAEEAAA 42 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEcCHHHHHHHHH
Confidence 58899999999999999999999 689999998877665544
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.38 Score=40.59 Aligned_cols=77 Identities=19% Similarity=0.188 Sum_probs=60.5
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
.+++|++++=.|++.|+ ++...+-.||+.|+.+..+.+.++...+..++.+.++.++.+|+++..
T Consensus 42 g~l~g~~V~DlG~GTG~---La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~------------ 106 (198)
T COG2263 42 GDLEGKTVLDLGAGTGI---LAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR------------ 106 (198)
T ss_pred CCcCCCEEEEcCCCcCH---HHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC------------
Confidence 46899999999988775 233344568889999999998888777777667778999999998744
Q ss_pred CCCCcEEEEcccc
Q 018819 162 GRPLDVLVCNAAV 174 (350)
Q Consensus 162 ~g~id~lv~~Ag~ 174 (350)
++.|.+|.|.-.
T Consensus 107 -~~~dtvimNPPF 118 (198)
T COG2263 107 -GKFDTVIMNPPF 118 (198)
T ss_pred -CccceEEECCCC
Confidence 478899988754
|
|
| >cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.46 Score=43.36 Aligned_cols=76 Identities=17% Similarity=0.204 Sum_probs=49.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.+.+++|.|+++++|.++++.....|+ +|+.+.++.++.+.+ .++ |.+. ++. + +. +..+.+.+. ..+
T Consensus 142 ~g~~vlV~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~-~~~---g~~~-~~~-~--~~-~~~~~i~~~---~~~ 208 (320)
T cd08243 142 PGDTLLIRGGTSSVGLAALKLAKALGA-TVTATTRSPERAALL-KEL---GADE-VVI-D--DG-AIAEQLRAA---PGG 208 (320)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH-Hhc---CCcE-EEe-c--Cc-cHHHHHHHh---CCC
Confidence 578999999999999999999999996 788888876654444 333 2221 111 2 11 222222222 246
Q ss_pred CcEEEEccc
Q 018819 165 LDVLVCNAA 173 (350)
Q Consensus 165 id~lv~~Ag 173 (350)
+|.++++.|
T Consensus 209 ~d~vl~~~~ 217 (320)
T cd08243 209 FDKVLELVG 217 (320)
T ss_pred ceEEEECCC
Confidence 999998876
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.31 Score=51.27 Aligned_cols=37 Identities=32% Similarity=0.341 Sum_probs=32.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
.|++.+|+|.|+ ||+|..+++.|+..|..++.+++.+
T Consensus 329 kL~~srVlVvGl-GGlGs~ia~~LAraGVG~I~L~D~D 365 (989)
T PRK14852 329 RLLRSRVAIAGL-GGVGGIHLMTLARTGIGNFNLADFD 365 (989)
T ss_pred HHhcCcEEEECC-cHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 577889999985 7999999999999998889888764
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.93 E-value=1.1 Score=38.57 Aligned_cols=70 Identities=17% Similarity=0.233 Sum_probs=44.4
Q ss_pred EEEcCCCchHHHHHHHHHHcCCcEEEEEecCh-hHHHHHHHHhccC-----------CCceEEEEccCCCHHHHHHHHHH
Q 018819 90 IITGASSGLGLATAKALAETGKWHIIMACRDF-LKAERAAKSAGMA-----------KENYTIMHLDLASLDSVRQFVDT 157 (350)
Q Consensus 90 lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~-~~~~~~~~~l~~~-----------~~~v~~~~~Dvs~~~~v~~~~~~ 157 (350)
+..||+|-||.+++++|++.| +.|++.+|+. +..+.+.+.+... ..++.++..-. +.+..++.+
T Consensus 4 ~~i~GtGniG~alA~~~a~ag-~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~---~a~~~v~~~ 79 (211)
T COG2085 4 IAIIGTGNIGSALALRLAKAG-HEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPF---EAIPDVLAE 79 (211)
T ss_pred EEEeccChHHHHHHHHHHhCC-CeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccH---HHHHhHHHH
Confidence 445678999999999999999 5888886654 4444444444211 23444444433 456666667
Q ss_pred HHHcCC
Q 018819 158 FRRSGR 163 (350)
Q Consensus 158 ~~~~~g 163 (350)
+.+.++
T Consensus 80 l~~~~~ 85 (211)
T COG2085 80 LRDALG 85 (211)
T ss_pred HHHHhC
Confidence 766553
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.62 Score=44.28 Aligned_cols=114 Identities=13% Similarity=0.019 Sum_probs=65.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcE------EEEE--ecChhHHHHHHHHhccCC----CceEEEEccCCCHHHHHHHH
Q 018819 88 SVIITGASSGLGLATAKALAETGKWH------IIMA--CRDFLKAERAAKSAGMAK----ENYTIMHLDLASLDSVRQFV 155 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~------Vi~~--~r~~~~~~~~~~~l~~~~----~~v~~~~~Dvs~~~~v~~~~ 155 (350)
.+.|+|++|.+|.++|..|+..|-.. ++++ +++.+.++....++...- .++.+. . .+.++
T Consensus 46 KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~-~--~~y~~----- 117 (387)
T TIGR01757 46 NVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIG-I--DPYEV----- 117 (387)
T ss_pred EEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEe-c--CCHHH-----
Confidence 68999999999999999999887422 3334 677666655554443211 112111 1 12121
Q ss_pred HHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEec
Q 018819 156 DTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (350)
Q Consensus 156 ~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS 226 (350)
+..-|++|..||.... + ..+.. ..+..|+. +.+.+.+.+.+...+.+.||++|-
T Consensus 118 ------~kdaDIVVitAG~prk--p--g~tR~---dll~~N~~----I~k~i~~~I~~~a~~~~iviVVsN 171 (387)
T TIGR01757 118 ------FEDADWALLIGAKPRG--P--GMERA---DLLDINGQ----IFADQGKALNAVASKNCKVLVVGN 171 (387)
T ss_pred ------hCCCCEEEECCCCCCC--C--CCCHH---HHHHHHHH----HHHHHHHHHHHhCCCCeEEEEcCC
Confidence 2368999999998532 2 23333 34555543 445555555552222456777664
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.4 Score=43.76 Aligned_cols=74 Identities=15% Similarity=0.126 Sum_probs=45.2
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEcc--CCCHHHHHHHHHHHHHcCCCCc
Q 018819 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD--LASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 89 ~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~D--vs~~~~v~~~~~~~~~~~g~id 166 (350)
++|.|+ ||||..+|+.|+..|..++.+++.+.-+...+.. ++.+-.-| +... -.+.+.+.+.+.++.++
T Consensus 2 VLIvGa-GGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~R-------Q~L~~~~D~~iGk~-Ka~aaa~~L~~iNP~v~ 72 (307)
T cd01486 2 CLLLGA-GTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVR-------QSLFTFEDCKGGKP-KAEAAAERLKEIFPSID 72 (307)
T ss_pred EEEECC-CHHHHHHHHHHHHcCCCeEEEECCCEeccccCCc-------ccccccchhhcCcc-HHHHHHHHHHHHCCCcE
Confidence 677776 7999999999999999899999876422222211 12222223 3332 34555566666556666
Q ss_pred EEEEc
Q 018819 167 VLVCN 171 (350)
Q Consensus 167 ~lv~~ 171 (350)
+-.++
T Consensus 73 v~~~~ 77 (307)
T cd01486 73 ATGIV 77 (307)
T ss_pred EEEee
Confidence 54444
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.52 Score=43.36 Aligned_cols=76 Identities=18% Similarity=0.269 Sum_probs=49.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
+++++|.|+++++|..+++.....|+ +|+.+.++.++.+.+ .++ |... + .|..+. . .+.+.... .+.+
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~-~~~---g~~~-v--~~~~~~-~-~~~~~~~~--~~~~ 214 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGY-EVVASTGKADAADYL-KKL---GAKE-V--IPREEL-Q-EESIKPLE--KQRW 214 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCC-eEEEEecCHHHHHHH-HHc---CCCE-E--EcchhH-H-HHHHHhhc--cCCc
Confidence 67999999999999999999999996 888888887665544 333 2211 1 222222 1 12222221 2468
Q ss_pred cEEEEccc
Q 018819 166 DVLVCNAA 173 (350)
Q Consensus 166 d~lv~~Ag 173 (350)
|.++++.|
T Consensus 215 d~vld~~g 222 (326)
T cd08289 215 AGAVDPVG 222 (326)
T ss_pred CEEEECCc
Confidence 99988876
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH |
| >cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.5 Score=44.77 Aligned_cols=80 Identities=15% Similarity=0.187 Sum_probs=51.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCH-HHHHHHHHHHHHcCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL-DSVRQFVDTFRRSGR 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~-~~v~~~~~~~~~~~g 163 (350)
.+.+++|.| .+++|..++..+...|+.+|+.++++.++.+.+ +++. .+ .+ .+..+. ++..+.+.++.. +
T Consensus 190 ~g~~VlV~G-~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a-~~lG---a~-~~--i~~~~~~~~~~~~v~~~~~--~ 259 (373)
T cd08299 190 PGSTCAVFG-LGGVGLSAIMGCKAAGASRIIAVDINKDKFAKA-KELG---AT-EC--INPQDYKKPIQEVLTEMTD--G 259 (373)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHcC---Cc-eE--ecccccchhHHHHHHHHhC--C
Confidence 477999996 589999999999999965788888887766555 3342 21 11 222221 123333333322 3
Q ss_pred CCcEEEEcccc
Q 018819 164 PLDVLVCNAAV 174 (350)
Q Consensus 164 ~id~lv~~Ag~ 174 (350)
++|.++++.|.
T Consensus 260 ~~d~vld~~g~ 270 (373)
T cd08299 260 GVDFSFEVIGR 270 (373)
T ss_pred CCeEEEECCCC
Confidence 69999999874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically |
| >PTZ00354 alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.55 Score=43.22 Aligned_cols=80 Identities=16% Similarity=0.225 Sum_probs=50.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
++.+++|.|+++++|..+++.+...|+ .++++.++.++.+.+ ..+ |.+. + .|..+.+...+.+.+... ..+
T Consensus 140 ~~~~vlI~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~-~~~---g~~~-~--~~~~~~~~~~~~~~~~~~-~~~ 210 (334)
T PTZ00354 140 KGQSVLIHAGASGVGTAAAQLAEKYGA-ATIITTSSEEKVDFC-KKL---AAII-L--IRYPDEEGFAPKVKKLTG-EKG 210 (334)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH-HHc---CCcE-E--EecCChhHHHHHHHHHhC-CCC
Confidence 577999999999999999999999996 667777776665544 333 3221 1 222232212222222221 235
Q ss_pred CcEEEEccc
Q 018819 165 LDVLVCNAA 173 (350)
Q Consensus 165 id~lv~~Ag 173 (350)
+|.++++.|
T Consensus 211 ~d~~i~~~~ 219 (334)
T PTZ00354 211 VNLVLDCVG 219 (334)
T ss_pred ceEEEECCc
Confidence 999998875
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.39 Score=45.27 Aligned_cols=75 Identities=13% Similarity=0.150 Sum_probs=47.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.+++++|.|+ |+||..+++.....|+ +|++++.+.++..+..+++ |... + .|..+.+.+.+. .+.
T Consensus 183 ~g~~VlV~G~-G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~~~---Ga~~-v--i~~~~~~~~~~~-------~~~ 247 (360)
T PLN02586 183 PGKHLGVAGL-GGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAINRL---GADS-F--LVSTDPEKMKAA-------IGT 247 (360)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHHhC---CCcE-E--EcCCCHHHHHhh-------cCC
Confidence 5789999765 8999999998888997 6777766655444443333 3321 1 233333322221 235
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|.+.|.
T Consensus 248 ~D~vid~~g~ 257 (360)
T PLN02586 248 MDYIIDTVSA 257 (360)
T ss_pred CCEEEECCCC
Confidence 8999988873
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.32 Score=40.17 Aligned_cols=37 Identities=22% Similarity=0.394 Sum_probs=31.6
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
.+++|+.++|.|| |-+|...++.|.+.|+ .|.+++..
T Consensus 9 l~l~~~~vlVvGG-G~va~rka~~Ll~~ga-~V~VIsp~ 45 (157)
T PRK06719 9 FNLHNKVVVIIGG-GKIAYRKASGLKDTGA-FVTVVSPE 45 (157)
T ss_pred EEcCCCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEcCc
Confidence 4789999999997 7899999999999996 77777543
|
|
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.49 Score=44.67 Aligned_cols=80 Identities=16% Similarity=0.127 Sum_probs=51.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCH-HHHHHHHHHHHHcCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL-DSVRQFVDTFRRSGR 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~-~~v~~~~~~~~~~~g 163 (350)
.+.+++|.| .|++|..+++.....|+.+|+.++++.++.+.+ +++ |.+ .+ .|..+. ..+.+.+.+... +
T Consensus 184 ~g~~vlV~G-~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~-~~~---ga~-~~--i~~~~~~~~~~~~~~~~~~--~ 253 (365)
T cd08277 184 PGSTVAVFG-LGAVGLSAIMGAKIAGASRIIGVDINEDKFEKA-KEF---GAT-DF--INPKDSDKPVSEVIREMTG--G 253 (365)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHc---CCC-cE--eccccccchHHHHHHHHhC--C
Confidence 578999997 499999999988888975788888887665544 333 222 11 222221 122333333332 4
Q ss_pred CCcEEEEcccc
Q 018819 164 PLDVLVCNAAV 174 (350)
Q Consensus 164 ~id~lv~~Ag~ 174 (350)
++|++|.+.|.
T Consensus 254 g~d~vid~~g~ 264 (365)
T cd08277 254 GVDYSFECTGN 264 (365)
T ss_pred CCCEEEECCCC
Confidence 69999998874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.43 Score=46.47 Aligned_cols=77 Identities=13% Similarity=0.232 Sum_probs=48.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+.+++++|+|.+ ++|.++|+.|+++|+ .|.+.+...... ..+.++.....+.++..+.. .. .+
T Consensus 2 ~~~~~~~~v~G~g-~~G~~~a~~l~~~g~-~v~~~d~~~~~~--~~~~l~~~~~gi~~~~g~~~-~~----~~------- 65 (445)
T PRK04308 2 TFQNKKILVAGLG-GTGISMIAYLRKNGA-EVAAYDAELKPE--RVAQIGKMFDGLVFYTGRLK-DA----LD------- 65 (445)
T ss_pred CCCCCEEEEECCC-HHHHHHHHHHHHCCC-EEEEEeCCCCch--hHHHHhhccCCcEEEeCCCC-HH----HH-------
Confidence 3567899999985 999999999999995 888887654321 11223221123444433322 11 11
Q ss_pred CCCcEEEEccccC
Q 018819 163 RPLDVLVCNAAVY 175 (350)
Q Consensus 163 g~id~lv~~Ag~~ 175 (350)
...|.||...|+.
T Consensus 66 ~~~d~vv~spgi~ 78 (445)
T PRK04308 66 NGFDILALSPGIS 78 (445)
T ss_pred hCCCEEEECCCCC
Confidence 2579999999985
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.45 Score=44.93 Aligned_cols=37 Identities=24% Similarity=0.227 Sum_probs=32.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
.+++++|+|.|+ ||+|..++..|++.|..++++++.+
T Consensus 173 kL~~~~VaIVG~-GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 173 KLEGQRIAIIGL-GGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred HHhhCcEEEEcC-CccHHHHHHHHHHcCCCEEEEECCC
Confidence 567889999997 8999999999999998899998764
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.68 E-value=1.9 Score=37.63 Aligned_cols=76 Identities=25% Similarity=0.156 Sum_probs=49.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
+.++|-.|++.|. ++..++..|+.+|+.++.+....+.+.+.+...+.++.++..|+.+. + ..+.+
T Consensus 37 ~~~vLDlGcG~G~---~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~------~-----~~~~f 102 (223)
T PRK14967 37 GRRVLDLCTGSGA---LAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA------V-----EFRPF 102 (223)
T ss_pred CCeEEEecCCHHH---HHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh------c-----cCCCe
Confidence 4578888887654 34445556755899999998776655555444444567777776531 1 12479
Q ss_pred cEEEEccccC
Q 018819 166 DVLVCNAAVY 175 (350)
Q Consensus 166 d~lv~~Ag~~ 175 (350)
|.+|.|....
T Consensus 103 D~Vi~npPy~ 112 (223)
T PRK14967 103 DVVVSNPPYV 112 (223)
T ss_pred eEEEECCCCC
Confidence 9999997653
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=93.68 E-value=1.2 Score=41.11 Aligned_cols=112 Identities=22% Similarity=0.187 Sum_probs=64.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHcC-CcEEEEEecChhHHHHHHHHhccCC---CceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 88 SVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAK---ENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~G-a~~Vi~~~r~~~~~~~~~~~l~~~~---~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
.+.|.|+ |.+|..+|..|+.+| +..|++++++.+..+.....+.... ....... +|.++ ..
T Consensus 2 kI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~---~d~~~-----------l~ 66 (308)
T cd05292 2 KVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYA---GDYAD-----------CK 66 (308)
T ss_pred EEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEee---CCHHH-----------hC
Confidence 4788897 899999999999999 3589999998766553333332111 1112111 22221 23
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEec
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS 226 (350)
..|++|.++|.... + ..+. ...+..|+ .+.+.+.+.+.+.. +.|.+++++.
T Consensus 67 ~aDiViita~~~~~--~--~~~r---~dl~~~n~----~i~~~~~~~l~~~~-~~giiiv~tN 117 (308)
T cd05292 67 GADVVVITAGANQK--P--GETR---LDLLKRNV----AIFKEIIPQILKYA-PDAILLVVTN 117 (308)
T ss_pred CCCEEEEccCCCCC--C--CCCH---HHHHHHHH----HHHHHHHHHHHHHC-CCeEEEEecC
Confidence 68999999997432 1 2232 23344443 34444444444433 2466776654
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd05282 ETR_like 2-enoyl thioester reductase-like | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.5 Score=43.33 Aligned_cols=80 Identities=16% Similarity=0.086 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.+.+++|.|+++++|.++++.+...|+ +|+++.++.++.+.+ +++ +.+ . ..|..+.+..+.+ .+... ..+
T Consensus 138 ~~~~vlI~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~-~~~---g~~-~--~~~~~~~~~~~~~-~~~~~-~~~ 207 (323)
T cd05282 138 PGDWVIQNAANSAVGRMLIQLAKLLGF-KTINVVRRDEQVEEL-KAL---GAD-E--VIDSSPEDLAQRV-KEATG-GAG 207 (323)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecChHHHHHH-Hhc---CCC-E--EecccchhHHHHH-HHHhc-CCC
Confidence 577999999999999999999999996 788887776654444 333 221 1 1223332322322 22211 236
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|.++.+.|.
T Consensus 208 ~d~vl~~~g~ 217 (323)
T cd05282 208 ARLALDAVGG 217 (323)
T ss_pred ceEEEECCCC
Confidence 9999988763
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.51 Score=46.39 Aligned_cols=76 Identities=17% Similarity=0.086 Sum_probs=50.4
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh-hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~-~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
.++++.++|.|+ |++|.++|+.|.++|. .|.+.+++. +......+.++..| +.++..+-.. .
T Consensus 13 ~~~~~~v~viG~-G~~G~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~l~~~g--v~~~~~~~~~-------------~ 75 (480)
T PRK01438 13 DWQGLRVVVAGL-GVSGFAAADALLELGA-RVTVVDDGDDERHRALAAILEALG--ATVRLGPGPT-------------L 75 (480)
T ss_pred CcCCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEeCCchhhhHHHHHHHHHcC--CEEEECCCcc-------------c
Confidence 457889999997 7899999999999995 788887553 33333344454444 3333322111 0
Q ss_pred CCCCcEEEEccccC
Q 018819 162 GRPLDVLVCNAAVY 175 (350)
Q Consensus 162 ~g~id~lv~~Ag~~ 175 (350)
....|.+|...|+.
T Consensus 76 ~~~~D~Vv~s~Gi~ 89 (480)
T PRK01438 76 PEDTDLVVTSPGWR 89 (480)
T ss_pred cCCCCEEEECCCcC
Confidence 12589999999984
|
|
| >cd08290 ETR 2-enoyl thioester reductase (ETR) | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.33 Score=45.11 Aligned_cols=36 Identities=31% Similarity=0.270 Sum_probs=31.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~ 121 (350)
++++++|.|+++++|.++++.....|+ .|+.+.++.
T Consensus 146 ~g~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~ 181 (341)
T cd08290 146 PGDWVIQNGANSAVGQAVIQLAKLLGI-KTINVVRDR 181 (341)
T ss_pred CCCEEEEccchhHHHHHHHHHHHHcCC-eEEEEEcCC
Confidence 578999999999999999999999996 677776654
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.32 Score=47.15 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=33.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK 123 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~ 123 (350)
.+.|++++|.|. |.||+.+|+.+...|+ +|+++.++..+
T Consensus 251 ~LaGKtVvViGy-G~IGr~vA~~aka~Ga-~VIV~e~dp~r 289 (477)
T PLN02494 251 MIAGKVAVICGY-GDVGKGCAAAMKAAGA-RVIVTEIDPIC 289 (477)
T ss_pred ccCCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEeCCchh
Confidence 368999999997 5999999999999997 89999887654
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.48 Score=44.26 Aligned_cols=42 Identities=21% Similarity=0.202 Sum_probs=34.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHH
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA 127 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~ 127 (350)
.+++++|+| .|++|..+++.....|+..|+.++++.++.+.+
T Consensus 160 ~g~~vlV~G-~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~ 201 (347)
T PRK10309 160 EGKNVIIIG-AGTIGLLAIQCAVALGAKSVTAIDINSEKLALA 201 (347)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH
Confidence 578999997 599999999999999975578888877665543
|
|
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.4 Score=44.81 Aligned_cols=80 Identities=26% Similarity=0.294 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.+++++|+|+ +++|..+++.+...|+.+|++++++.++.+.+ .++ |.+. ..|..+.+..+.+ .+... .++
T Consensus 172 ~g~~vlI~g~-g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~-~~~---ga~~---~i~~~~~~~~~~l-~~~~~-~~~ 241 (351)
T cd08233 172 PGDTALVLGA-GPIGLLTILALKAAGASKIIVSEPSEARRELA-EEL---GATI---VLDPTEVDVVAEV-RKLTG-GGG 241 (351)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHh---CCCE---EECCCccCHHHHH-HHHhC-CCC
Confidence 5789999985 89999999999999965788888877665544 333 3322 1244433322222 22211 135
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|.++.+.|.
T Consensus 242 ~d~vid~~g~ 251 (351)
T cd08233 242 VDVSFDCAGV 251 (351)
T ss_pred CCEEEECCCC
Confidence 9999999874
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1 | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.43 Score=44.09 Aligned_cols=77 Identities=14% Similarity=0.188 Sum_probs=46.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
.+++++||+|++|..+++.....|+ +|+.+.++.++.+.+. ++ |.+. ++ |..+.+..+. +.+... ..++|
T Consensus 145 ~vlv~~~g~g~vG~~a~q~a~~~G~-~vi~~~~~~~~~~~~~-~~---g~~~-~i--~~~~~~~~~~-v~~~~~-~~~~d 214 (324)
T cd08291 145 KAVVHTAAASALGRMLVRLCKADGI-KVINIVRRKEQVDLLK-KI---GAEY-VL--NSSDPDFLED-LKELIA-KLNAT 214 (324)
T ss_pred cEEEEccCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH-Hc---CCcE-EE--ECCCccHHHH-HHHHhC-CCCCc
Confidence 4445559999999999988888897 7888888876655443 23 3322 22 2222222222 222222 13699
Q ss_pred EEEEccc
Q 018819 167 VLVCNAA 173 (350)
Q Consensus 167 ~lv~~Ag 173 (350)
+++.+.|
T Consensus 215 ~vid~~g 221 (324)
T cd08291 215 IFFDAVG 221 (324)
T ss_pred EEEECCC
Confidence 9999877
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin |
| >cd08241 QOR1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.35 Score=44.01 Aligned_cols=80 Identities=24% Similarity=0.332 Sum_probs=50.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
++.+++|+|+++++|..++..+...|+ .|+.+.++.++.+.+ ..+ +... .+ +..+.+..+. +..... ...
T Consensus 139 ~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~-~~~---g~~~-~~--~~~~~~~~~~-i~~~~~-~~~ 208 (323)
T cd08241 139 PGETVLVLGAAGGVGLAAVQLAKALGA-RVIAAASSEEKLALA-RAL---GADH-VI--DYRDPDLRER-VKALTG-GRG 208 (323)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHhCC-EEEEEeCCHHHHHHH-HHc---CCce-ee--ecCCccHHHH-HHHHcC-CCC
Confidence 578999999999999999999999996 788888876555443 222 2221 22 2222222222 222221 236
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|.++++.|.
T Consensus 209 ~d~v~~~~g~ 218 (323)
T cd08241 209 VDVVYDPVGG 218 (323)
T ss_pred cEEEEECccH
Confidence 9999998764
|
QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic |
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.53 Score=44.71 Aligned_cols=75 Identities=15% Similarity=0.191 Sum_probs=47.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.+.+++|.|+ |++|..+++.....|+ +|++++++.++..+..+++ |.+. + .|..+.+.+.+ ..++
T Consensus 178 ~g~~VlV~G~-G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a~~l---Ga~~-~--i~~~~~~~v~~-------~~~~ 242 (375)
T PLN02178 178 SGKRLGVNGL-GGLGHIAVKIGKAFGL-RVTVISRSSEKEREAIDRL---GADS-F--LVTTDSQKMKE-------AVGT 242 (375)
T ss_pred CCCEEEEEcc-cHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHHHhC---CCcE-E--EcCcCHHHHHH-------hhCC
Confidence 5789999886 8999999998889997 7887777654433333333 3322 1 23333322222 1236
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|+++.+.|.
T Consensus 243 ~D~vid~~G~ 252 (375)
T PLN02178 243 MDFIIDTVSA 252 (375)
T ss_pred CcEEEECCCc
Confidence 9999998874
|
|
| >cd05286 QOR2 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.54 Score=42.65 Aligned_cols=80 Identities=24% Similarity=0.316 Sum_probs=50.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
++.+++|.|+++++|.++++.....|+ .|+.+.++.++.+.+ .++ +.+ .++. ..+.+.... +..... ..+
T Consensus 136 ~g~~vlI~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~-~~~---g~~-~~~~--~~~~~~~~~-~~~~~~-~~~ 205 (320)
T cd05286 136 PGDTVLVHAAAGGVGLLLTQWAKALGA-TVIGTVSSEEKAELA-RAA---GAD-HVIN--YRDEDFVER-VREITG-GRG 205 (320)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHH-HHC---CCC-EEEe--CCchhHHHH-HHHHcC-CCC
Confidence 578999999999999999999999996 788888776665444 333 322 1222 222222222 222211 236
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|.++++.+.
T Consensus 206 ~d~vl~~~~~ 215 (320)
T cd05286 206 VDVVYDGVGK 215 (320)
T ss_pred eeEEEECCCc
Confidence 9999988763
|
Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone |
| >cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.61 Score=42.98 Aligned_cols=79 Identities=20% Similarity=0.223 Sum_probs=50.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
++.+++|.|+++++|.++++.....|+ .|+.+.++.++.+.+ ..+ +.+ .++ |..+. +..+.+..... +.
T Consensus 139 ~~~~vlI~ga~g~ig~~~~~~a~~~g~-~v~~~~~~~~~~~~~-~~~---g~~-~v~--~~~~~-~~~~~~~~~~~--~~ 207 (329)
T cd08250 139 SGETVLVTAAAGGTGQFAVQLAKLAGC-HVIGTCSSDEKAEFL-KSL---GCD-RPI--NYKTE-DLGEVLKKEYP--KG 207 (329)
T ss_pred CCCEEEEEeCccHHHHHHHHHHHHcCC-eEEEEeCcHHHHHHH-HHc---CCc-eEE--eCCCc-cHHHHHHHhcC--CC
Confidence 578999999999999999998888996 788888876655444 333 221 122 22222 22233333221 46
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|.++++.|.
T Consensus 208 vd~v~~~~g~ 217 (329)
T cd08250 208 VDVVYESVGG 217 (329)
T ss_pred CeEEEECCcH
Confidence 9999988763
|
Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.78 Score=43.04 Aligned_cols=83 Identities=20% Similarity=0.246 Sum_probs=49.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.+.++||+| ++++|..+++.+...|+.+|+++.++.++.+.+ +.+ |... ++..+-.+..+....+.+... ..+
T Consensus 177 ~g~~vlI~g-~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~-~~~---g~~~-vi~~~~~~~~~~~~~i~~~~~-~~~ 249 (361)
T cd08231 177 AGDTVVVQG-AGPLGLYAVAAAKLAGARRVIVIDGSPERLELA-REF---GADA-TIDIDELPDPQRRAIVRDITG-GRG 249 (361)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHc---CCCe-EEcCcccccHHHHHHHHHHhC-CCC
Confidence 678999997 599999999988889964788888876655433 333 3221 221111111112222222222 236
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|+++++.|.
T Consensus 250 ~d~vid~~g~ 259 (361)
T cd08231 250 ADVVIEASGH 259 (361)
T ss_pred CcEEEECCCC
Confidence 9999998764
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.26 Score=39.84 Aligned_cols=38 Identities=18% Similarity=0.194 Sum_probs=33.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~ 121 (350)
+++||.++|.|.+.-+|+.++..|.++|+ .|.++.++.
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~ga-tV~~~~~~t 62 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGA-TVYSCDWKT 62 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeCCCC
Confidence 57899999999999999999999999996 888887653
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.49 Score=44.43 Aligned_cols=74 Identities=19% Similarity=0.243 Sum_probs=47.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC---hhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRD---FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~---~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
.+++++|+|+ |++|...++.+...|+ +|++++|+ .++.+ ..+++ |.. . .|..+. ++.+ . ..
T Consensus 172 ~g~~vlI~G~-G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~-~~~~~---Ga~--~--v~~~~~-~~~~-~----~~ 235 (355)
T cd08230 172 NPRRALVLGA-GPIGLLAALLLRLRGF-EVYVLNRRDPPDPKAD-IVEEL---GAT--Y--VNSSKT-PVAE-V----KL 235 (355)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHH-HHHHc---CCE--E--ecCCcc-chhh-h----hh
Confidence 6789999985 9999999988888997 78888873 33433 33333 333 2 233332 2222 1 11
Q ss_pred CCCCcEEEEcccc
Q 018819 162 GRPLDVLVCNAAV 174 (350)
Q Consensus 162 ~g~id~lv~~Ag~ 174 (350)
.+.+|++|.+.|.
T Consensus 236 ~~~~d~vid~~g~ 248 (355)
T cd08230 236 VGEFDLIIEATGV 248 (355)
T ss_pred cCCCCEEEECcCC
Confidence 2479999999874
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.5 Score=48.62 Aligned_cols=37 Identities=30% Similarity=0.311 Sum_probs=31.7
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCC-cEEEEEecC
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGK-WHIIMACRD 120 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga-~~Vi~~~r~ 120 (350)
..+++.+|+|.|. | +|..++..|+..|. .++++++.+
T Consensus 103 ~~L~~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D 140 (722)
T PRK07877 103 ERLGRLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFD 140 (722)
T ss_pred HHHhcCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCC
Confidence 3578889999999 4 99999999999994 689988775
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.56 Score=41.15 Aligned_cols=78 Identities=21% Similarity=0.198 Sum_probs=56.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
++.++.+|=.|++|| .+++.||+.|+ .|...+-+++..+.+.....+.+..+.+. ...++++.+..
T Consensus 57 ~l~g~~vLDvGCGgG---~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i~y~----------~~~~edl~~~~ 122 (243)
T COG2227 57 DLPGLRVLDVGCGGG---ILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVNIDYR----------QATVEDLASAG 122 (243)
T ss_pred CCCCCeEEEecCCcc---HhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccccccch----------hhhHHHHHhcC
Confidence 478999999999999 68999999996 99999988877777665554444443332 22333444444
Q ss_pred CCCcEEEEcccc
Q 018819 163 RPLDVLVCNAAV 174 (350)
Q Consensus 163 g~id~lv~~Ag~ 174 (350)
++.|+|++.-.+
T Consensus 123 ~~FDvV~cmEVl 134 (243)
T COG2227 123 GQFDVVTCMEVL 134 (243)
T ss_pred CCccEEEEhhHH
Confidence 789999887655
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.29 Score=49.16 Aligned_cols=59 Identities=8% Similarity=0.123 Sum_probs=47.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHH
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQF 154 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~ 154 (350)
.++|.|+ |.+|+.+++.|.++| ..+++.+.++++.++..+ . ....+.+|.+|++.++++
T Consensus 419 hiiI~G~-G~~G~~la~~L~~~g-~~vvvId~d~~~~~~~~~-~-----g~~~i~GD~~~~~~L~~a 477 (558)
T PRK10669 419 HALLVGY-GRVGSLLGEKLLAAG-IPLVVIETSRTRVDELRE-R-----GIRAVLGNAANEEIMQLA 477 (558)
T ss_pred CEEEECC-ChHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHH-C-----CCeEEEcCCCCHHHHHhc
Confidence 5677775 799999999999999 589999999877666543 1 467889999998876653
|
|
| >cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1 | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.72 Score=42.91 Aligned_cols=76 Identities=21% Similarity=0.281 Sum_probs=48.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.+.+++|+|+++++|.++++.....|+ +|+.+.++ .+ .+..+++ +.. . ..|..+.+..+.+ .. .+.
T Consensus 162 ~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~~~~-~~-~~~~~~~---g~~-~--~~~~~~~~~~~~l----~~-~~~ 227 (350)
T cd08248 162 AGKRVLILGGSGGVGTFAIQLLKAWGA-HVTTTCST-DA-IPLVKSL---GAD-D--VIDYNNEDFEEEL----TE-RGK 227 (350)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCc-ch-HHHHHHh---CCc-e--EEECCChhHHHHH----Hh-cCC
Confidence 388999999999999999999999997 77777654 22 2233333 221 1 2233333333322 22 246
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|.++++.|.
T Consensus 228 vd~vi~~~g~ 237 (350)
T cd08248 228 FDVILDTVGG 237 (350)
T ss_pred CCEEEECCCh
Confidence 9999988763
|
Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.74 Score=42.33 Aligned_cols=113 Identities=22% Similarity=0.207 Sum_probs=66.7
Q ss_pred EEEcCCCchHHHHHHHHHHcC-CcEEEEEecChhHHHHHHHHhccCCC---ceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 90 IITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAKE---NYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 90 lItGgs~gIG~~ia~~la~~G-a~~Vi~~~r~~~~~~~~~~~l~~~~~---~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
.|.|+ |++|..+|..|+..| +..+++++++.+..+....++..... ......+ .|.+ . ...-
T Consensus 2 ~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~--~~~~-------~----l~~a 67 (300)
T cd00300 2 TIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRG--GDYA-------D----AADA 67 (300)
T ss_pred EEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEEC--CCHH-------H----hCCC
Confidence 57786 689999999999988 34799999987776666555543211 1122211 2211 1 1368
Q ss_pred cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccC
Q 018819 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~ 228 (350)
|++|.++|.... + .++.. ..+..|+ -+.+.+.+.+.+.. +.+.+|++|-..
T Consensus 68 DiVIitag~p~~--~--~~~R~---~l~~~n~----~i~~~~~~~i~~~~-p~~~viv~sNP~ 118 (300)
T cd00300 68 DIVVITAGAPRK--P--GETRL---DLINRNA----PILRSVITNLKKYG-PDAIILVVSNPV 118 (300)
T ss_pred CEEEEcCCCCCC--C--CCCHH---HHHHHHH----HHHHHHHHHHHHhC-CCeEEEEccChH
Confidence 999999998532 1 23332 2333443 34455555555443 356788777543
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.54 Score=45.01 Aligned_cols=81 Identities=17% Similarity=0.160 Sum_probs=49.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.+.+++|. |.|+||..+++.+...|+..|++.+++.++.+.+ +++ |.. . .|..+.+++.+.+.++.. ...
T Consensus 185 ~g~~VlV~-G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a-~~~---Ga~--~--v~~~~~~~~~~~v~~~~~-~~g 254 (393)
T TIGR02819 185 PGSTVYIA-GAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQA-RSF---GCE--T--VDLSKDATLPEQIEQILG-EPE 254 (393)
T ss_pred CCCEEEEE-CCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHH-HHc---CCe--E--EecCCcccHHHHHHHHcC-CCC
Confidence 57789994 5699999999988889985566556665554433 333 332 1 233322223333333322 235
Q ss_pred CcEEEEccccC
Q 018819 165 LDVLVCNAAVY 175 (350)
Q Consensus 165 id~lv~~Ag~~ 175 (350)
+|++|.+.|..
T Consensus 255 ~Dvvid~~G~~ 265 (393)
T TIGR02819 255 VDCAVDCVGFE 265 (393)
T ss_pred CcEEEECCCCc
Confidence 99999999964
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.69 Score=42.94 Aligned_cols=80 Identities=25% Similarity=0.279 Sum_probs=51.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.+.++||.|+++++|.++++.+...|+ +|+.+.++.++.+.+ +.+. .+. + ++..+.+...++. +.. ..++
T Consensus 165 ~~~~vlV~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~-~~~g---~~~-v--~~~~~~~~~~~~~-~~~-~~~~ 234 (341)
T cd08297 165 PGDWVVISGAGGGLGHLGVQYAKAMGL-RVIAIDVGDEKLELA-KELG---ADA-F--VDFKKSDDVEAVK-ELT-GGGG 234 (341)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH-HHcC---CcE-E--EcCCCccHHHHHH-HHh-cCCC
Confidence 478999999999999999999999996 899988887665544 3332 221 1 2333332223322 221 1246
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|.++++.+.
T Consensus 235 vd~vl~~~~~ 244 (341)
T cd08297 235 AHAVVVTAVS 244 (341)
T ss_pred CCEEEEcCCc
Confidence 9999986653
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >COG2130 Putative NADP-dependent oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.43 Score=43.29 Aligned_cols=106 Identities=15% Similarity=0.165 Sum_probs=68.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.|.|++|++|+|..|..+.+----+|+ +||-+.-..++..-+.+++. .+ ...|...+ ++.+.+.+.. -..
T Consensus 150 ~GetvvVSaAaGaVGsvvgQiAKlkG~-rVVGiaGg~eK~~~l~~~lG---fD---~~idyk~~-d~~~~L~~a~--P~G 219 (340)
T COG2130 150 AGETVVVSAAAGAVGSVVGQIAKLKGC-RVVGIAGGAEKCDFLTEELG---FD---AGIDYKAE-DFAQALKEAC--PKG 219 (340)
T ss_pred CCCEEEEEecccccchHHHHHHHhhCC-eEEEecCCHHHHHHHHHhcC---Cc---eeeecCcc-cHHHHHHHHC--CCC
Confidence 589999999999999876665445785 88888888777666655553 11 12344443 3333333221 137
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCC
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNT 231 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~ 231 (350)
||+.+-|.|.- -+ .+++++|.. .+||+.++-++.+.
T Consensus 220 IDvyfeNVGg~------------v~---------------DAv~~~ln~----~aRi~~CG~IS~YN 255 (340)
T COG2130 220 IDVYFENVGGE------------VL---------------DAVLPLLNL----FARIPVCGAISQYN 255 (340)
T ss_pred eEEEEEcCCch------------HH---------------HHHHHhhcc----ccceeeeeehhhcC
Confidence 99999999851 12 233445544 35999998888764
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.42 Score=41.34 Aligned_cols=58 Identities=16% Similarity=0.252 Sum_probs=40.7
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChh-HHHHHHHHhccCCCceEEEEccCC
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL-KAERAAKSAGMAKENYTIMHLDLA 146 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~-~~~~~~~~l~~~~~~v~~~~~Dvs 146 (350)
.+++|+.+||.|| |.+|..-++.|++.|| +|.+++.+.. .++++.+ .+ ++.++.-+..
T Consensus 5 l~l~gk~vlVvGg-G~va~rk~~~Ll~~ga-~VtVvsp~~~~~l~~l~~----~~-~i~~~~~~~~ 63 (205)
T TIGR01470 5 ANLEGRAVLVVGG-GDVALRKARLLLKAGA-QLRVIAEELESELTLLAE----QG-GITWLARCFD 63 (205)
T ss_pred EEcCCCeEEEECc-CHHHHHHHHHHHHCCC-EEEEEcCCCCHHHHHHHH----cC-CEEEEeCCCC
Confidence 4678999999997 7899999999999997 7888776532 3333322 12 4556555544
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.59 Score=44.87 Aligned_cols=85 Identities=16% Similarity=0.270 Sum_probs=60.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
+.+..+||+|| ||||.++.+.|+..|-..|.+++.+.-++..+- .++.|-+=||....+.. +.+.+.+-.+
T Consensus 10 i~~~riLvVGa-GGIGCELLKnLal~gf~~IhiIDlDTIDlSNLN-------RQFLFrkkhVgqsKA~v-A~~~v~~Fnp 80 (603)
T KOG2013|consen 10 IKSGRILVVGA-GGIGCELLKNLALTGFEEIHIIDLDTIDLSNLN-------RQFLFRKKHVGQSKATV-AAKAVKQFNP 80 (603)
T ss_pred hccCeEEEEec-CcccHHHHHHHHHhcCCeeEEEeccceeccchh-------hhheeehhhcCchHHHH-HHHHHHHhCC
Confidence 35668999997 899999999999999888999888754444332 24567777888766532 2233333447
Q ss_pred CCcEEEEccccCCC
Q 018819 164 PLDVLVCNAAVYLP 177 (350)
Q Consensus 164 ~id~lv~~Ag~~~~ 177 (350)
.++++-+.|-+..+
T Consensus 81 n~~l~~yhanI~e~ 94 (603)
T KOG2013|consen 81 NIKLVPYHANIKEP 94 (603)
T ss_pred CCceEeccccccCc
Confidence 89999999888643
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.31 Score=44.27 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=32.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
.++||.++|+|.+.-+|+.++..|.++|| .|.++.+.
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~ 191 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSR 191 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCC
Confidence 57999999999999899999999999997 77777654
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.91 E-value=1 Score=42.01 Aligned_cols=87 Identities=20% Similarity=0.129 Sum_probs=52.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHH---Hhc--cCCCceEEEEccCCCHHHHHHHH-H
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK---SAG--MAKENYTIMHLDLASLDSVRQFV-D 156 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~---~l~--~~~~~v~~~~~Dvs~~~~v~~~~-~ 156 (350)
.+.|+++.|.|. |.||+.+|+.|...| .+|+..+|+......... .+. ....++..+.+-.+.. ...++ +
T Consensus 143 ~l~g~~VgIIG~-G~IG~~vA~~L~~~G-~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~~--t~~li~~ 218 (330)
T PRK12480 143 PVKNMTVAIIGT-GRIGAATAKIYAGFG-ATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKE--SYHLFDK 218 (330)
T ss_pred ccCCCEEEEECC-CHHHHHHHHHHHhCC-CEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcHH--HHHHHhH
Confidence 578999999986 789999999999999 599999987543221111 111 1234566666665542 22333 3
Q ss_pred HHHHcCCCCcEEEEcccc
Q 018819 157 TFRRSGRPLDVLVCNAAV 174 (350)
Q Consensus 157 ~~~~~~g~id~lv~~Ag~ 174 (350)
...... +.+.++-|.+-
T Consensus 219 ~~l~~m-k~gavlIN~aR 235 (330)
T PRK12480 219 AMFDHV-KKGAILVNAAR 235 (330)
T ss_pred HHHhcC-CCCcEEEEcCC
Confidence 333333 34555555553
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.56 Score=45.59 Aligned_cols=40 Identities=23% Similarity=0.343 Sum_probs=34.4
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKA 124 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~ 124 (350)
.+.||+++|.|.+ .||+.+|+.|...|+ +|+++.++....
T Consensus 251 ~LaGKtVgVIG~G-~IGr~vA~rL~a~Ga-~ViV~e~dp~~a 290 (476)
T PTZ00075 251 MIAGKTVVVCGYG-DVGKGCAQALRGFGA-RVVVTEIDPICA 290 (476)
T ss_pred CcCCCEEEEECCC-HHHHHHHHHHHHCCC-EEEEEeCCchhH
Confidence 5799999999975 699999999999997 898888875443
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.32 Score=41.10 Aligned_cols=42 Identities=29% Similarity=0.375 Sum_probs=33.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHh
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA 131 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l 131 (350)
++.|.|+ |-+|..+|..++..| ..|.+++++.+.++...+.+
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G-~~V~l~d~~~~~l~~~~~~i 42 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAG-YEVTLYDRSPEALERARKRI 42 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTT-SEEEEE-SSHHHHHHHHHHH
T ss_pred CEEEEcC-CHHHHHHHHHHHhCC-CcEEEEECChHHHHhhhhHH
Confidence 3678887 899999999999999 69999999987776655544
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >TIGR01751 crot-CoA-red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.77 Score=43.89 Aligned_cols=42 Identities=26% Similarity=0.287 Sum_probs=33.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHH
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA 127 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~ 127 (350)
++.+++|+|+++++|..+++.+...|+ +++++.++.++.+.+
T Consensus 189 ~g~~vlV~Ga~g~vG~~ai~~ak~~G~-~vi~~~~~~~~~~~~ 230 (398)
T TIGR01751 189 PGDNVLIWGAAGGLGSYATQLARAGGG-NPVAVVSSPEKAEYC 230 (398)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHH
Confidence 468999999999999999999989996 677777766554433
|
The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. |
| >KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.75 E-value=1.2 Score=40.48 Aligned_cols=106 Identities=12% Similarity=0.140 Sum_probs=68.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+|+|++|.||+|..|.-+-+.-.-.|+ +|+-..-+.++..-+..++. -+ ...|.-++.++.+++.++..+ .
T Consensus 153 ~geTv~VSaAsGAvGql~GQ~Ak~~Gc-~VVGsaGS~EKv~ll~~~~G---~d---~afNYK~e~~~~~aL~r~~P~--G 223 (343)
T KOG1196|consen 153 KGETVFVSAASGAVGQLVGQFAKLMGC-YVVGSAGSKEKVDLLKTKFG---FD---DAFNYKEESDLSAALKRCFPE--G 223 (343)
T ss_pred CCCEEEEeeccchhHHHHHHHHHhcCC-EEEEecCChhhhhhhHhccC---Cc---cceeccCccCHHHHHHHhCCC--c
Confidence 679999999999999866655555797 77777666666555544432 11 123445555666666664332 6
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCC
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 230 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~ 230 (350)
||+-+-|.|.. ++.+.+..|.. .|||+.++-++.+
T Consensus 224 IDiYfeNVGG~---------------------------~lDavl~nM~~----~gri~~CG~ISqY 258 (343)
T KOG1196|consen 224 IDIYFENVGGK---------------------------MLDAVLLNMNL----HGRIAVCGMISQY 258 (343)
T ss_pred ceEEEeccCcH---------------------------HHHHHHHhhhh----ccceEeeeeehhc
Confidence 99999999852 11233344555 3699999877655
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.49 Score=44.45 Aligned_cols=37 Identities=30% Similarity=0.444 Sum_probs=33.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~ 121 (350)
.+.||++.|.|- |.||+.+|+.|...|+ +|+.++|+.
T Consensus 156 ~l~gktvGIiG~-G~IG~~vA~~l~afG~-~V~~~dr~~ 192 (347)
T PLN02928 156 TLFGKTVFILGY-GAIGIELAKRLRPFGV-KLLATRRSW 192 (347)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHhhCCC-EEEEECCCC
Confidence 578999999996 8999999999999995 999998863
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.67 E-value=1.3 Score=41.59 Aligned_cols=114 Identities=16% Similarity=0.142 Sum_probs=67.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcC-CcEEEEEecChhHHHHHHHHhccCC---CceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 87 GSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAK---ENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~G-a~~Vi~~~r~~~~~~~~~~~l~~~~---~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
+.+.|+|+ |.+|..+|..|+..| +..+++++.+.+.++....++.... ....+. . -.|.+ . .
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~-~-~~dy~-------~----~ 103 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKIL-A-STDYA-------V----T 103 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEE-e-CCCHH-------H----h
Confidence 58999996 999999999999887 3479999988765554444443211 112221 1 11222 1 1
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEec
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS 226 (350)
..-|++|..||.... + .++..+ .+..|+ -+.+.+.+.+.+.. +.+.+|++|-
T Consensus 104 ~daDiVVitAG~~~k--~--g~tR~d---ll~~N~----~I~~~i~~~I~~~~-p~~ivivvtN 155 (350)
T PLN02602 104 AGSDLCIVTAGARQI--P--GESRLN---LLQRNV----ALFRKIIPELAKYS-PDTILLIVSN 155 (350)
T ss_pred CCCCEEEECCCCCCC--c--CCCHHH---HHHHHH----HHHHHHHHHHHHHC-CCeEEEEecC
Confidence 368999999998532 2 234332 344443 34455555554433 2467777764
|
|
| >cd08246 crotonyl_coA_red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=92.65 E-value=1.1 Score=42.63 Aligned_cols=42 Identities=29% Similarity=0.314 Sum_probs=34.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHH
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA 127 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~ 127 (350)
.+.+++|+|+++++|.+++......|+ +++++.++.++.+.+
T Consensus 193 ~g~~vlV~ga~g~iG~a~~~lak~~G~-~vv~~~~s~~~~~~~ 234 (393)
T cd08246 193 PGDNVLIWGASGGLGSMAIQLARAAGA-NPVAVVSSEEKAEYC 234 (393)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHH
Confidence 478999999999999999998888996 677777776665544
|
Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma |
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.12 Score=39.29 Aligned_cols=38 Identities=18% Similarity=0.369 Sum_probs=31.8
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~ 121 (350)
.+++++.+||+|| |.+|..=++.|.+.|| +|.+++...
T Consensus 3 l~l~~~~vlVvGg-G~va~~k~~~Ll~~gA-~v~vis~~~ 40 (103)
T PF13241_consen 3 LDLKGKRVLVVGG-GPVAARKARLLLEAGA-KVTVISPEI 40 (103)
T ss_dssp E--TT-EEEEEEE-SHHHHHHHHHHCCCTB-EEEEEESSE
T ss_pred EEcCCCEEEEECC-CHHHHHHHHHHHhCCC-EEEEECCch
Confidence 3678999999998 8999999999999997 898888875
|
|
| >COG5322 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.24 Score=43.97 Aligned_cols=42 Identities=26% Similarity=0.228 Sum_probs=36.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE 125 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~ 125 (350)
++++.++-|.|++|-||.++|++|+.++. +..++.|+.+..+
T Consensus 164 dlsqatvaivGa~G~Ia~~Iar~la~~~~-~~~ll~r~aea~~ 205 (351)
T COG5322 164 DLSQATVAIVGATGDIASAIARWLAPKVG-VKELLLRDAEARN 205 (351)
T ss_pred CHHHCeEEEecCCchHHHHHHHHhccccC-EEEEecccHHhhh
Confidence 56788999999999999999999999995 8888888765543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 350 | ||||
| 3rd5_A | 291 | Crystal Structure Of A Putative Uncharacterized Pro | 3e-17 | ||
| 1n5d_A | 288 | Crystal Structure Of Porcine Testicular Carbonyl Re | 5e-07 | ||
| 3rku_A | 287 | Substrate Fingerprint And The Structure Of Nadp+ De | 1e-06 | ||
| 3f9i_A | 249 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 3e-06 | ||
| 2pfg_A | 276 | Crystal Structure Of Human Cbr1 In Complex With Big | 4e-06 | ||
| 1wma_A | 276 | Crystal Structure Of Human Cbr1 In Complex With Hyd | 4e-06 | ||
| 2hrb_A | 274 | Crystal Structure Of Human Carbonyl Reductase 3, Co | 5e-06 | ||
| 1vl8_A | 267 | Crystal Structure Of Gluconate 5-dehydrogenase (tm0 | 1e-05 | ||
| 3ai1_A | 263 | The Crystal Structure Of L-Sorbose Reductase From G | 3e-05 | ||
| 3ai3_A | 263 | The Crystal Structure Of L-Sorbose Reductase From G | 3e-05 | ||
| 3tn7_A | 257 | Crystal Structure Of Short-Chain Alcohol Dehydrogen | 6e-05 | ||
| 1nxq_A | 251 | Crystal Structure Of R-Alcohol Dehydrogenase (Radh) | 7e-05 | ||
| 1zjy_A | 251 | Structure Of R-Specific Alcohol Dehydrogenase (Muta | 9e-05 | ||
| 3u9l_A | 324 | The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Pr | 1e-04 | ||
| 3awd_A | 260 | Crystal Structure Of Gox2181 Length = 260 | 3e-04 | ||
| 1xkq_A | 280 | Crystal Structure Of Short-Chain DehydrogenaseREDUC | 6e-04 | ||
| 2ztm_A | 260 | T190s Mutant Of D-3-Hydroxybutyrate Dehydrogenase L | 6e-04 | ||
| 1wmb_A | 260 | Crystal Structure Of Nad Dependent D-3-Hydroxybutyl | 7e-04 | ||
| 2ztu_A | 260 | T190a Mutant Of D-3-Hydroxybutyrate Dehydrogenase C | 7e-04 | ||
| 3o26_A | 311 | The Structure Of Salutaridine Reductase From Papave | 8e-04 |
| >pdb|3RD5|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein From Mycobacterium Paratuberculosis Length = 291 | Back alignment and structure |
|
| >pdb|1N5D|A Chain A, Crystal Structure Of Porcine Testicular Carbonyl Reductase 20beta-Hydroxysteroid Dehydrogenase Length = 288 | Back alignment and structure |
|
| >pdb|3RKU|A Chain A, Substrate Fingerprint And The Structure Of Nadp+ Dependent Serine Dehydrogenase From Saccharomyces Cerevisiae Complexed With Nadp+ Length = 287 | Back alignment and structure |
|
| >pdb|3F9I|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase Rickettsia Prowazekii Length = 249 | Back alignment and structure |
|
| >pdb|2PFG|A Chain A, Crystal Structure Of Human Cbr1 In Complex With Bigf2 Length = 276 | Back alignment and structure |
|
| >pdb|1WMA|A Chain A, Crystal Structure Of Human Cbr1 In Complex With Hydroxy-pp Length = 276 | Back alignment and structure |
|
| >pdb|2HRB|A Chain A, Crystal Structure Of Human Carbonyl Reductase 3, Complexed With Nadp+ Length = 274 | Back alignment and structure |
|
| >pdb|1VL8|A Chain A, Crystal Structure Of Gluconate 5-dehydrogenase (tm0441) From Thermotoga Maritima At 2.07 A Resolution Length = 267 | Back alignment and structure |
|
| >pdb|3AI1|A Chain A, The Crystal Structure Of L-Sorbose Reductase From Gluconobacter Frateurii Complexed With Nadph And L-Sorbose Reveals The Structure Bases Of Its Catalytic Mechanism And High Substrate Selectivity Length = 263 | Back alignment and structure |
|
| >pdb|3AI3|A Chain A, The Crystal Structure Of L-Sorbose Reductase From Gluconobacter Frateurii Complexed With Nadph And L-Sorbose Length = 263 | Back alignment and structure |
|
| >pdb|3TN7|A Chain A, Crystal Structure Of Short-Chain Alcohol Dehydrogenase From Hyperthermophilic Archaeon Thermococcus Sibiricus Complexed With 5- Hydroxy-Nadp Length = 257 | Back alignment and structure |
|
| >pdb|1NXQ|A Chain A, Crystal Structure Of R-Alcohol Dehydrogenase (Radh) (Apoenyzme) From Lactobacillus Brevis Length = 251 | Back alignment and structure |
|
| >pdb|1ZJY|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus Brevis In Complex With Phenylethanol And Nadh Length = 251 | Back alignment and structure |
|
| >pdb|3U9L|A Chain A, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein] Reductase (Nadph) From Sinorhizobium Meliloti Length = 324 | Back alignment and structure |
|
| >pdb|3AWD|A Chain A, Crystal Structure Of Gox2181 Length = 260 | Back alignment and structure |
|
| >pdb|1XKQ|A Chain A, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE OF Unknown Function From Caenorhabditis Elegans With Cofactor Length = 280 | Back alignment and structure |
|
| >pdb|2ZTM|A Chain A, T190s Mutant Of D-3-Hydroxybutyrate Dehydrogenase Length = 260 | Back alignment and structure |
|
| >pdb|1WMB|A Chain A, Crystal Structure Of Nad Dependent D-3-Hydroxybutylate Dehydrogenase Length = 260 | Back alignment and structure |
|
| >pdb|2ZTU|A Chain A, T190a Mutant Of D-3-Hydroxybutyrate Dehydrogenase Complexed With Nad+ Length = 260 | Back alignment and structure |
|
| >pdb|3O26|A Chain A, The Structure Of Salutaridine Reductase From Papaver Somniferum Length = 311 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} Length = 291 | Back alignment and structure |
|---|
Score = 173 bits (441), Expect = 3e-52
Identities = 80/273 (29%), Positives = 110/273 (40%), Gaps = 55/273 (20%)
Query: 65 TMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKA 124
+M + A D+ S + +V+ITGA+SGLG TA+ LA G +IMA RD K
Sbjct: 2 SMTGWTAA-DLPSFAQR------TVVITGANSGLGAVTARELARRG-ATVIMAVRDTRKG 53
Query: 125 ERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTF 184
E AA++ + LDL L SVR+F D DVL+ NA +
Sbjct: 54 EAAARTMA---GQVEVRELDLQDLSSVRRFADGVSG----ADVLINNAGIMAV---PYAL 103
Query: 185 TAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244
T +GFE +GTNHLGHF L+ LLL L R++ V S+
Sbjct: 104 TVDGFESQIGTNHLGHFALTNLLLPRLT------DRVVTVSSMA-------------HWP 144
Query: 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEE-TGIAFASL 303
G + L LN S + AY SK+ N+L E RR + + +
Sbjct: 145 GRIN-----LEDLNWRS----RRYSPWLAYSQSKLANLLFTSELQRRLTAAGSPLRALAA 195
Query: 304 YPGCIATTGLFREHIP------LFRLLFPPFQK 330
+PG + T L L
Sbjct: 196 HPG-YSHTNLQG-ASGRKLGDALMSAATRVVAT 226
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* Length = 276 | Back alignment and structure |
|---|
Score = 165 bits (419), Expect = 3e-49
Identities = 51/231 (22%), Positives = 90/231 (38%), Gaps = 14/231 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TG + G+GLA + L +++ RD + + A + + LD+ L
Sbjct: 7 ALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDL 66
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
S+R D R+ LDVLV NA + +PT E+++ TN G + LL
Sbjct: 67 QSIRALRDFLRKEYGGLDVLVNNAGIAFKV-ADPTPFHIQAEVTMKTNFFGTRDVCTELL 125
Query: 209 DDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMID---- 264
+K P R++ V SI + + + L GL + + D
Sbjct: 126 PLIK----PQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTKKG 181
Query: 265 --GGDFDGAKAYKDSKVCNMLTMQEFHRRFHEE---TGIAFASLYPGCIAT 310
+ + AY +K+ + + R+ E+ I + PG + T
Sbjct: 182 VHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRT 232
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} Length = 311 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 1e-33
Identities = 56/285 (19%), Positives = 92/285 (32%), Gaps = 56/285 (19%)
Query: 66 MATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE 125
M P ++ ++ ++TG + G+G K L+ G +++ CRD K
Sbjct: 1 MPETCP----NTVTKRRC-----AVVTGGNKGIGFEICKQLSSNG-IMVVLTCRDVTKGH 50
Query: 126 RAAKS-AGMAKENYTIMHLDLAS-LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPT 183
A + EN LD+ + ++ D + LD+LV NA V +
Sbjct: 51 EAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHFGKLDILVNNAGVAGFSVDADR 110
Query: 184 F-----------------------------TAEGFELSVGTNHLGHFLLSRLLLDDLKQS 214
F T E E + N+ G ++ +L+ L+ S
Sbjct: 111 FKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQLS 170
Query: 215 DYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGG---------LNGLNSSSMIDG 265
D P R++ V S TG+ N LGD L + +
Sbjct: 171 DSP--RIVNVSSSTGSL-KYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETN 227
Query: 266 GDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIAT 310
G AY SK C + + + PG + T
Sbjct: 228 GWPSFGAAYTTSKACLNAYTRVLANKI---PKFQVNCVCPGLVKT 269
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 250 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 1e-27
Identities = 50/240 (20%), Positives = 74/240 (30%), Gaps = 54/240 (22%)
Query: 88 SVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA 146
SV++TGA+ G+GL + L + HII RD KA ++ L +
Sbjct: 5 SVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKD---SRVHVLPLTVT 61
Query: 147 SLDSVRQFVDTFRR--SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 204
S+ FV L +L+ NA V L + N LL+
Sbjct: 62 CDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLT 121
Query: 205 RLLLDDLKQSDYPS---------KRLIIV----GSITGNTNTLAGNVPPKANLGDLRGFA 251
+ LL LK + +I + GSIT NT
Sbjct: 122 QKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNT-------------------- 161
Query: 252 GGLNGLNSSSMIDGGDFDGAKAYKDSKV-CNMLTMQEFHRRFHEETGIAFASLYPGCIAT 310
G AY+ SK NM ++ + + PG + T
Sbjct: 162 ------------SGSAQFPVLAYRMSKAAINMFGRT-LAVDL-KDDNVLVVNFCPGWVQT 207
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 8e-25
Identities = 51/230 (22%), Positives = 89/230 (38%), Gaps = 35/230 (15%)
Query: 88 SVIITGASSGLGLATAKALAETGK--WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDL 145
S++ITG + GLGL KAL + H+ CR+ +A+ + N I+ +DL
Sbjct: 23 SILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAK-ELEDLAKNHSNIHILEIDL 81
Query: 146 ASLDSVRQFVDTFRRS--GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLL 203
+ D+ + V + L+VL NA + +A+ ++ ++ TN + +L
Sbjct: 82 RNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIML 141
Query: 204 SRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSM- 262
++ L LK++ ++ + + N+ SS +
Sbjct: 142 AKACLPLLKKAAKANE-----------SQPMGVGRAAIINM--------------SSILG 176
Query: 263 -IDGGDFDGAKAYKDSKVC-NMLTMQEFHRRFHEETGIAFASLYPGCIAT 310
I G G AY+ SK N T I SL+PG + T
Sbjct: 177 SIQGNTDGGMYAYRTSKSALNAATKS-LSVDL-YPQRIMCVSLHPGWVKT 224
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* Length = 248 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 4e-18
Identities = 35/150 (23%), Positives = 68/150 (45%), Gaps = 6/150 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V++TGA++G G + + G +I R + ER + +N I LD+ +
Sbjct: 3 VLVTGATAGFGECITRRFIQQG-HKVIATGR---RQERLQELKDELGDNLYIAQLDVRNR 58
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
++ + + + +D+LV NA + L + E +E + TN+ G ++R +L
Sbjct: 59 AAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVL 118
Query: 209 DDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238
+ + + +I +GS G+ GNV
Sbjct: 119 PGMVERN--HGHIINIGSTAGSWPYAGGNV 146
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} Length = 235 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 6e-18
Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 8/141 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+I+TGA SGLG A L E G + M R + + ++ G + DLA
Sbjct: 6 IIVTGAGSGLGRALTIGLVERG-HQVSMMGRRYQRLQQQELLLG---NAVIGIVADLAHH 61
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
+ V G ++++ A +TAE + +N + L+++ +
Sbjct: 62 EDVDVAFAAAVEWGGLPELVLHCAGTGEFGPVG-VYTAEQIRRVMESNLVSTILVAQQTV 120
Query: 209 DDLKQSDYPSKRLIIVGSITG 229
+ + L V S
Sbjct: 121 RLIGER---GGVLANVLSSAA 138
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} Length = 287 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 1e-17
Identities = 35/154 (22%), Positives = 68/154 (44%), Gaps = 6/154 (3%)
Query: 89 VIITGASSGLGLATAKALAETGK--WHIIMACR--DFLKAERAAKSAGMAKENYTIMHLD 144
V+ITGAS+G+G ATA E +I+A R + L+ + + LD
Sbjct: 36 VLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLD 95
Query: 145 LASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 204
+ + ++ F++ + + +D+LV NA L + + E + TN ++
Sbjct: 96 ITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINIT 155
Query: 205 RLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238
+ +L + + S ++ +GSI G G++
Sbjct: 156 QAVLPIFQAKN--SGDIVNLGSIAGRDAYPTGSI 187
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} Length = 272 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 2e-17
Identities = 44/142 (30%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
I+TGA SG+G A A ALA G + + +A R + A G ++ + D+
Sbjct: 31 AIVTGAGSGVGRAVAVALAGAG-YGVALAGRRLDALQETAAEIG---DDALCVPTDVTDP 86
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
DSVR T + GR +DVL NA P T ++ V TN G FL ++
Sbjct: 87 DSVRALFTATVEKFGR-VDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEA 145
Query: 208 LDDLKQSDYPSKRLIIVGSITG 229
+K + R+I GSI+
Sbjct: 146 FRVMKAQEPRGGRIINNGSISA 167
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} Length = 272 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 4e-17
Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 13/168 (7%)
Query: 76 SSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-----DFLKAERAAKS 130
S + + ++ ITGA+SG G A A+ AE G W +++ R L E +AK+
Sbjct: 11 SGLVPRGSHMSSTLFITGATSGFGEACARRFAEAG-WSLVLTGRREERLQALAGELSAKT 69
Query: 131 AGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFE 190
+ LD+ ++ VD L L+ NA + L T + + ++
Sbjct: 70 RVLPLT------LDVRDRAAMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWD 123
Query: 191 LSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238
V TN G +RLLL L + ++ +GS+ G +V
Sbjct: 124 TMVDTNIKGLLYSTRLLLPRLIAHGAGA-SIVNLGSVAGKWPYPGSHV 170
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* Length = 259 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 5e-17
Identities = 30/151 (19%), Positives = 56/151 (37%), Gaps = 10/151 (6%)
Query: 89 VIITGASSGLGLATAKALAETGK--WHIIMACRDFLKAERAAKSAGMAKENYTIMHL--D 144
++TGAS G G A A LA ++++ R + + G + + ++ D
Sbjct: 9 CVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAAD 68
Query: 145 LASLDSVRQFVDTFRRSGRP----LDVLVCNAAVYLPTAKEP--TFTAEGFELSVGTNHL 198
L + V++ + R RP +L+ NAA +K N
Sbjct: 69 LGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLT 128
Query: 199 GHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
L+ L+ + S SK ++ + S+
Sbjct: 129 SMLCLTSGTLNAFQDSPGLSKTVVNISSLCA 159
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} Length = 235 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 8e-17
Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 20/160 (12%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACR-----DFLKAERAAKSAGMAKENYTIMHL 143
+ITGAS G+G A A+ALA G + + + R + + E + HL
Sbjct: 5 AVITGASRGIGEAIARALARDG-YALALGARSVDRLEKIAHELMQEQGVEV----FYHHL 59
Query: 144 DLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLL 203
D++ +SV +F +DV+V NA + + + E F + N LG +
Sbjct: 60 DVSKAESVEEFSKKVLERFGDVDVVVANAGL-GYFKRLEELSEEEFHEMIEVNLLGVWRT 118
Query: 204 SRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243
+ LD LK+ + L +V T+ ++ + P
Sbjct: 119 LKAFLDSLKR----TGGLALV-----TTSDVSARLIPYGG 149
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} Length = 234 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 1e-16
Identities = 42/156 (26%), Positives = 62/156 (39%), Gaps = 8/156 (5%)
Query: 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMH 142
KG+V+ITGAS G+G ATA+ L G + + + RD + + A A +
Sbjct: 2 EGMKGAVLITGASRGIGEATARLLHAKG-YRVGLMARDEKRLQALAAELEGA----LPLP 56
Query: 143 LDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 202
D+ + V + L LV NA V T E + L + TN G FL
Sbjct: 57 GDVREEGDWARAVAAMEEAFGELSALVNNAGV-GVMKPVHELTLEEWRLVLDTNLTGAFL 115
Query: 203 LSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238
R + L + ++ VGS+ G G
Sbjct: 116 GIRHAVPALLRRG--GGTIVNVGSLAGKNPFKGGAA 149
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} Length = 266 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 2e-16
Identities = 37/173 (21%), Positives = 66/173 (38%), Gaps = 15/173 (8%)
Query: 66 MATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE 125
MA+ + + KK V+ITGASSG+G A A+ +E G +++ R
Sbjct: 1 MASMTGGQQMGRGSMKKL-----VVITGASSGIGEAIARRFSEEG-HPLLLLAR------ 48
Query: 126 RAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFT 185
R + + N +D+ + + + P D +V NA + + + T
Sbjct: 49 RVERLKALNLPNTLCAQVDVTDKYTFDTAITRAEKIYGPADAIVNNAGM-MLLGQIDTQE 107
Query: 186 AEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238
A ++ N LG + +L +K + +I + SI G
Sbjct: 108 ANEWQRMFDVNVLGLLNGMQAVLAPMKARN--CGTIINISSIAGKKTFPDHAA 158
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} Length = 281 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 2e-16
Identities = 40/166 (24%), Positives = 64/166 (38%), Gaps = 4/166 (2%)
Query: 66 MATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE 125
+ T + QGK + ++TG +G+G A+AL+ G + +++ R +
Sbjct: 13 LGTENLYFQSMMAQGKGSGEGRIALVTGGGTGVGRGIAQALSAEG-YSVVITGRRPDVLD 71
Query: 126 RAAKSAGMAK-ENYTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPT 183
AA G + D+ D V R LD+LV NA +P
Sbjct: 72 AAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEFAR-LDLLVNNAGSNVPPVPLEE 130
Query: 184 FTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
T E + V N G FL ++ +K R+I GSI+
Sbjct: 131 VTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISA 176
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 Length = 272 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 3e-16
Identities = 30/152 (19%), Positives = 60/152 (39%), Gaps = 4/152 (2%)
Query: 78 PQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKEN 137
P+ +K++ V+ITGA G+G TA A+ +++ + E A
Sbjct: 23 PKRRKSVTGEIVLITGAGHGIGRLTAYEFAKLK-SKLVLWDINKHGLEETAAKCKGLGAK 81
Query: 138 YTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNH 197
+D ++ + + + + +LV NA V + T+ E + N
Sbjct: 82 VHTFVVDCSNREDIYSSAKKVKAEIGDVSILVNNAGV-VYTSDLFATQDPQIEKTFEVNV 140
Query: 198 LGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
L HF ++ L + +++ ++ V S G
Sbjct: 141 LAHFWTTKAFLPAMTKNN--HGHIVTVASAAG 170
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* Length = 257 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 4e-16
Identities = 39/191 (20%), Positives = 64/191 (33%), Gaps = 36/191 (18%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++I+G ++G+G AT K L G I+ AE A DL++
Sbjct: 4 IVISGCATGIGAATRKVLEAAG-HQIVGIDIR--DAEVIA---------------DLSTA 45
Query: 149 DSVRQFV-DTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
+ +Q + D + + +D LV A + T V N+ G L
Sbjct: 46 EGRKQAIADVLAKCSKGMDGLVLCAGLGPQTKV--------LGNVVSVNYFGATELMDAF 97
Query: 208 LDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGD 267
L LK+ P+ V +++A G + + G+
Sbjct: 98 LPALKKGHQPA----AV-----VISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGE 148
Query: 268 FDGAKAYKDSK 278
G AY SK
Sbjct: 149 QGGNLAYAGSK 159
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} Length = 252 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 4e-16
Identities = 28/147 (19%), Positives = 45/147 (30%), Gaps = 5/147 (3%)
Query: 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMH 142
T R +V + GA +G AK A G + + R+ K A
Sbjct: 4 TPRNATVAVIGAGDYIGAEIAKKFAAEG-FTVFAGRRNGEKLAPLVAEIEAAGGRIVARS 62
Query: 143 LDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 202
LD + D V F++ PL+V + N + T T F F+
Sbjct: 63 LDARNEDEVTAFLNAADAHA-PLEVTIFNVGANVNFPILET-TDRVFRKVWEMACWAGFV 120
Query: 203 LSRLLLDDLKQSDYPSKRLIIVGSITG 229
R + ++ G+
Sbjct: 121 SGRESARLMLAHGQG--KIFFTGATAS 145
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} Length = 245 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 5e-16
Identities = 33/141 (23%), Positives = 52/141 (36%), Gaps = 12/141 (8%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGA+ G+G+ K L+ + E A A E + D+
Sbjct: 8 AVVTGATGGMGIEIVKDLSRDH-IVYALGRN----PEHLAALA--EIEGVEPIESDIVKE 60
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
VD + +D LV AAV T E + + + N + LSR LL
Sbjct: 61 VLEEGGVDKLKNLDH-VDTLVHAAAVARDTTIE-AGSVAEWHAHLDLNVIVPAELSRQLL 118
Query: 209 DDLKQSDYPSKRLIIVGSITG 229
L+ + S +I + S G
Sbjct: 119 PALRAA---SGCVIYINSGAG 136
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} Length = 264 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 7e-16
Identities = 38/150 (25%), Positives = 60/150 (40%), Gaps = 4/150 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++ITGAS G+G A+ L G I++ R + E A A LD+
Sbjct: 7 ILITGASGGIGEGIARELGVAG-AKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDR 65
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
SV F + +DVLV NA V +P + + +E + N G +L
Sbjct: 66 HSVAAFAQAAVDTWGRIDVLVNNAGV-MPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVL 124
Query: 209 DDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238
++ S ++I +GSI + V
Sbjct: 125 PIMEAQR--SGQIINIGSIGALSVVPTAAV 152
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} Length = 254 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 8e-16
Identities = 28/145 (19%), Positives = 57/145 (39%), Gaps = 9/145 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAGMAKENYTIMHLDLAS 147
+++TG S G+G + L K ++ R ++ + G + + + D+
Sbjct: 5 ILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYG---DRFFYVVGDITE 61
Query: 148 LDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
++Q V+ + G+ +D LV NA V P ++ N L +
Sbjct: 62 DSVLKQLVNAAVKGHGK-IDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGI 120
Query: 207 LLDDLKQSDYPSKRLIIVGSITGNT 231
L +LK++ + ++ V S N
Sbjct: 121 ALPELKKT---NGNVVFVSSDACNM 142
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} Length = 251 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 8e-16
Identities = 22/159 (13%), Positives = 46/159 (28%), Gaps = 22/159 (13%)
Query: 76 SSPQGKKTLRKGS-----VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS 130
+ +GS +++ G S LG K W+ I DF + A S
Sbjct: 7 HHHHSSGLVPRGSHMSKNILVLGGSGALGAEVVKFFKSKS-WNTISI--DFRENPNADHS 63
Query: 131 AGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFE 190
+ + + ++ ++ +D VC A + + +
Sbjct: 64 ----------FTIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVK 113
Query: 191 LSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
+ N F + + L Q ++ G+
Sbjct: 114 GMIDMNLYSAFASAHIGAKLLNQGG----LFVLTGASAA 148
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 Length = 244 | Back alignment and structure |
|---|
Score = 74.4 bits (184), Expect = 1e-15
Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 10/116 (8%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
++TGA G+G T KAL +G ++ R AK + + +DL D
Sbjct: 11 LVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECPGIE----PVCVDLGDWD 65
Query: 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+ + + +D+LV NAA+ + T E F+ S N F +S+
Sbjct: 66 ATEKALGGIGP----VDLLVNNAALVIMQPFL-EVTKEAFDRSFSVNLRSVFQVSQ 116
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... Length = 286 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 1e-15
Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 10/144 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA-GMAKENYTIMHLDLAS 147
VI+TGAS G+G A LA+ G H+++ R ++ + + + +
Sbjct: 31 VIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMED 89
Query: 148 LDSVRQFVD-TFRRSGRPLDVLVCNAAV-YLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+ QFV + G LD+L+ N S+ N L + +L+
Sbjct: 90 MTFAEQFVAQAGKLMGG-LDMLILNHITNTSLNLFHDDI--HHVRKSMEVNFLSYVVLTV 146
Query: 206 LLLDDLKQSDYPSKRLIIVGSITG 229
L LKQS + +++V S+ G
Sbjct: 147 AALPMLKQS---NGSIVVVSSLAG 167
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* Length = 244 | Back alignment and structure |
|---|
Score = 74.4 bits (184), Expect = 1e-15
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 10/117 (8%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V++TGA G+G T +AL TG ++ R + + + + +DL
Sbjct: 10 VLVTGAGKGIGRGTVQALHATG-ARVVAVSRTQADLDSLVRECPGIE----PVCVDLGDW 64
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
++ + + + +D+LV NAAV L T E F+ S N +S+
Sbjct: 65 EATERALGSVGP----VDLLVNNAAVALLQPFL-EVTKEAFDRSFEVNLRAVIQVSQ 116
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 236 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 1e-15
Identities = 19/141 (13%), Positives = 45/141 (31%), Gaps = 13/141 (9%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
VI+ G LG A + + G + ++ D ++A + + + +
Sbjct: 6 VIVYGGKGALGSAILEFFKKNG-YTVLNI--DLSANDQADSNILVD------GNKNWTEQ 56
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
+ G +D + C A + + + +L + + + ++L
Sbjct: 57 EQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLAT 116
Query: 209 DDLKQSDYPSKRLIIVGSITG 229
LK L + G+
Sbjct: 117 THLKPGG----LLQLTGAAAA 133
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} Length = 247 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 2e-15
Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 8/145 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA---KSAGMAKENYTIMHLDL 145
+++TGA+ G+G A A+A A G +++ R + KSAG + ++L+
Sbjct: 17 ILVTGAARGIGAAAARAYAAHG-ASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLEN 75
Query: 146 ASLDSVRQFVDT-FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 204
A+ R+ GR LD L+ NA++ P E F + N F+L+
Sbjct: 76 ATAQQYRELAARVEHEFGR-LDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLT 134
Query: 205 RLLLDDLKQSDYPSKRLIIVGSITG 229
R LL LK+S+ S + S G
Sbjct: 135 RALLPLLKRSEDAS--IAFTSSSVG 157
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* Length = 241 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 2e-15
Identities = 23/141 (16%), Positives = 45/141 (31%), Gaps = 13/141 (9%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V++ G LG +A W + D ++ E A+ S + +
Sbjct: 10 VLVYGGRGALGSRCVQAFRARN-WWVASI--DVVENEEASASVIVK-----MTDSFTEQA 61
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
D V V + +D ++C A + + + +L + + S L
Sbjct: 62 DQVTAEVGKLLGDQK-VDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLAT 120
Query: 209 DDLKQSDYPSKRLIIVGSITG 229
LK+ L + G+
Sbjct: 121 KHLKEGG----LLTLAGAKAA 137
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 Length = 279 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 2e-15
Identities = 29/159 (18%), Positives = 62/159 (38%), Gaps = 10/159 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACR--DFLKAERAAKSAGMAKENYTIMHLDLA 146
++TGAS G+G A A+AL + G ++ R ++ A + DL+
Sbjct: 35 ALVTGASGGIGAAVARALVQQG-LKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLS 93
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
+ + + R +D+ + NA + + + G++ N L + +R
Sbjct: 94 NEEDILSMFSAIRSQHSGVDICINNAGL-ARPDTLLSGSTSGWKDMFNVNVLALSICTRE 152
Query: 207 LLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245
+K+ + +I + S++G+ V P +
Sbjct: 153 AYQSMKERNVDDGHIININSMSGHR------VLPLSVTH 185
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... Length = 327 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 3e-15
Identities = 42/152 (27%), Positives = 65/152 (42%), Gaps = 16/152 (10%)
Query: 86 KGSVIITGASSGLGLATAKALAETGK--WHIIMACRDFLKAER---AAKSAGMAKENYTI 140
+ V+ITG SSG+GL A LA + + RD R AA++ +
Sbjct: 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLET 61
Query: 141 MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEG---FELSVGTNH 197
+ LD+ SV + GR +DVLVCNA + L E + N
Sbjct: 62 LQLDVRDSKSVAAARERV-TEGR-VDVLVCNAGLGLLGPLEALGEDAVASVLD----VNV 115
Query: 198 LGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
+G + + L D+K+ S R+++ GS+ G
Sbjct: 116 VGTVRMLQAFLPDMKRRG--SGRVLVTGSVGG 145
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} Length = 276 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 8e-15
Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 15/148 (10%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK---SAGMAKENYTIMHLDL 145
++TG S G+G A+ L E G + + RD A + G + DL
Sbjct: 32 ALVTGGSRGIGQMIAQGLLEAGA-RVFICARDAEACADTATRLSAYGDC----QAIPADL 86
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEP--TFTAEGFELSVGTNHLGHFLL 203
+S R+ LD+LV NA + ++ G+E + N F
Sbjct: 87 SSEAGARRLAQALGELSARLDILVNNAGT---SWGAALESYPVSGWEKVMQLNVTSVFSC 143
Query: 204 SRLLLDDLKQSDYPSK--RLIIVGSITG 229
+ LL L++S R+I +GS+ G
Sbjct: 144 IQQLLPLLRRSASAENPARVINIGSVAG 171
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} Length = 260 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 9e-15
Identities = 36/163 (22%), Positives = 62/163 (38%), Gaps = 12/163 (7%)
Query: 68 TASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA 127
S + QG TL ++ITGAS +GL A L E G +I++ R +
Sbjct: 9 HHSSGRENLYFQGHMTLSSAPILITGASQRVGLHCALRLLEHG-HRVIISYRTEHASVTE 67
Query: 128 AKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAE 187
+ AG ++ D + + F+D + L +V NA+ +L P A+
Sbjct: 68 LRQAGAV-----ALYGDFSCETGIMAFIDLLKTQTSSLRAVVHNASEWLAET--PGEEAD 120
Query: 188 GFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLII-VGSITG 229
F + L +L++ L S+ I+ +
Sbjct: 121 NFTRMFSVHMLAPYLINLHCEPLLTASEVAD---IVHISDDVT 160
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 278 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 9e-15
Identities = 34/148 (22%), Positives = 69/148 (46%), Gaps = 12/148 (8%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK---SAGMAKENYTIMHLDL 145
IITG+S+G+G ATA A G + + R + E + +AG++++N + D+
Sbjct: 9 AIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADV 67
Query: 146 ASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTF---TAEGFELSVGTNHLGHF 201
+ + + T + G+ LD+LV NA +P ++ T + E ++ ++ N
Sbjct: 68 TTDAGQDEILSTTLGKFGK-LDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVI 126
Query: 202 LLSRLLLDDLKQSDYPSKRLIIVGSITG 229
L++ + L + ++ + SI
Sbjct: 127 ALTKKAVPHLSST---KGEIVNISSIAS 151
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} Length = 264 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 9e-15
Identities = 33/142 (23%), Positives = 54/142 (38%), Gaps = 6/142 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V+I+G LG A+ AE G +++A R + E AK + D+
Sbjct: 14 VVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDD 72
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
V VD T + GR +DV++ NA T E ++ G L +
Sbjct: 73 AQVAHLVDETMKAYGR-VDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGF 131
Query: 208 LDDLKQSDYPSKRLIIVGSITG 229
L++S ++ V S+
Sbjct: 132 TPALEES---KGAVVNVNSMVV 150
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} Length = 281 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 1e-14
Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 6/121 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA---KSAGMAKENYTIMHLDL 145
++TG SG+G A L G +++ R+ K A ++ G D+
Sbjct: 14 YLVTGGGSGIGKGVAAGLVAAG-ASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDI 72
Query: 146 ASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 204
+ D + VD GR L +V A +E + +V N G +
Sbjct: 73 TNEDETARAVDAVTAWHGR-LHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVL 131
Query: 205 R 205
+
Sbjct: 132 K 132
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* Length = 254 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 1e-14
Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 5/116 (4%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
+TGA SG+GL +A A +G +I+ R+ +RAA+ G A + D+ +
Sbjct: 15 AVTGAGSGIGLEICRAFAASG-ARLILIDREAAALDRAAQELGAAV--AARIVADVTDAE 71
Query: 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
++ + +LV +A + + + N G F SR
Sbjct: 72 AMTAAAAEAEAVAP-VSILVNSAGIARLHDAL-ETDDATWRQVMAVNVDGMFWASR 125
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* Length = 247 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 1e-14
Identities = 43/150 (28%), Positives = 64/150 (42%), Gaps = 5/150 (3%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+ITGASSG+G ATA+ALA G + +A R K A ++ LD+A
Sbjct: 10 ALITGASSGIGEATARALAAEG-AAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADR 68
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
V V + + LD+LV NA + + + + TN LG ++R L
Sbjct: 69 QGVDAAVASTVEALGGLDILVNNAGI-MLLGPVEDADTTDWTRMIDTNLLGLMYMTRAAL 127
Query: 209 DDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238
L +S ++ + SI G N V
Sbjct: 128 PHLLRS---KGTVVQMSSIAGRVNVRNAAV 154
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} Length = 273 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 1e-14
Identities = 32/141 (22%), Positives = 53/141 (37%), Gaps = 9/141 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+ITGA+SG+GLA AK G + + R + A G + D A+L
Sbjct: 32 AVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEIG---GGAVGIQADSANL 87
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
+ + + + +DVL NA T E ++ + N G + L
Sbjct: 88 AELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLG-EVTEEQYDDTFDRNVKGVLFTVQKAL 146
Query: 209 DDLKQSDYPSKRLIIVGSITG 229
L + +++ GS G
Sbjct: 147 PLLARGS----SVVLTGSTAG 163
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A Length = 255 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 2e-14
Identities = 26/141 (18%), Positives = 54/141 (38%), Gaps = 9/141 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
I+ G + G+GLAT + L E G +++ R+ R + G + D+A L
Sbjct: 11 AIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEFG---PRVHALRSDIADL 66
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
+ + ++ +D+L NA V + + ++ N G F + L
Sbjct: 67 NEIAVLGAAAGQTLGAIDLLHINAGVSELEPFD-QVSEASYDRQFAVNTKGAFFTVQRLT 125
Query: 209 DDLKQSDYPSKRLIIVGSITG 229
+++ ++ S+
Sbjct: 126 PLIREGG----SIVFTSSVAD 142
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} Length = 260 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 3e-14
Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 7/143 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHL--DLA 146
++T SSGLG A+A LA G +++ R+ K E AA + + D+
Sbjct: 10 AVVTAGSSGLGFASALELARNGA-RLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIR 68
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
+ + + R G D+LV + P E ++ S + R
Sbjct: 69 EPGDIDRLFEKARDLGGA-DILVYSTGGPRPGRFM-ELGVEDWDESYRLLARSAVWVGRR 126
Query: 207 LLDDLKQSDYPSKRLIIVGSITG 229
+ + + + R++ +GS+T
Sbjct: 127 AAEQMVEKGWG--RMVYIGSVTL 147
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* Length = 263 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 3e-14
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 5/142 (3%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS-AGMAKENYTIMHLDLAS 147
+ITG+SSG+GLA A+ A+ G HI++ R + AA+S + +D+A+
Sbjct: 10 AVITGSSSGIGLAIAEGFAKEGA-HIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVAT 68
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
+ V V++ R S D+LV NA E ++ + L+R L
Sbjct: 69 PEGVDAVVESVRSSFGGADILVNNAGTGSNETIM-EAADEKWQFYWELLVMAAVRLARGL 127
Query: 208 LDDLKQSDYPSKRLIIVGSITG 229
+ ++ +I SI
Sbjct: 128 VPGMRARGGG--AIIHNASICA 147
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} Length = 202 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 3e-14
Identities = 27/151 (17%), Positives = 53/151 (35%), Gaps = 35/151 (23%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+++ GAS LG A + L + +I A R + + +D+ ++
Sbjct: 6 ILLIGASGTLGSAVKERLEKKA--EVITAGR------HSGD-----------VTVDITNI 46
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
DS+++ + + +D +V + T E +++ + G L L +
Sbjct: 47 DSIKKMYEQVGK----VDAIVSATGSATFSPLT-ELTPEKNAVTISSKLGGQINLVLLGI 101
Query: 209 DDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239
D L GS T T + P
Sbjct: 102 DSLNDK----------GSFT-LTTGIMMEDP 121
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} Length = 261 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 5e-14
Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 8/144 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+ITGA SG G AK A+ G +++ RD AER A G + + D++
Sbjct: 12 ALITGAGSGFGEGMAKRFAKGGA-KVVIVDRDKAGAERVAGEIG---DAALAVAADISKE 67
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
V V+ + G+ +D+LV NA + E F+ VG N G +L++ L
Sbjct: 68 ADVDAAVEAALSKFGK-VDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKL 126
Query: 208 LDDLKQSDYPSKRLIIV--GSITG 229
+ K++ + +I+ S
Sbjct: 127 IPHFKENGAKGQECVILNVASTGA 150
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} Length = 266 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 5e-14
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDLAS 147
+ITGA+ G+G A+A A G ++++ RD + + A ++ G + + +DLA
Sbjct: 23 ALITGATKGIGADIARAFAAAG-ARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAE 81
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
D+ + + LDVLV NA + P + F+ ++ N LL+
Sbjct: 82 PDAPAELARRAAEAFGGLDVLVNNAGISHPQPVV-DTDPQLFDATIAVNLRAPALLAS 138
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} Length = 260 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 6e-14
Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 11/154 (7%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
I+TG + +GLA ALAE G +I+A D A +A + M + + + +D+ +
Sbjct: 16 AIVTGGAQNIGLACVTALAEAGA-RVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNT 74
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
+SV+ V + GR +D+LV A + + K T + V N G F + +
Sbjct: 75 ESVQNAVRSVHEQEGR-VDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAV 133
Query: 208 LDD-LKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240
L+Q ++ +GS++G L N P
Sbjct: 134 GRIMLEQK---QGVIVAIGSMSG----LIVNRPQ 160
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 Length = 273 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 9e-14
Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 11/144 (7%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
++TG S G+G A + LA G + R+ + + + N DL S
Sbjct: 25 LVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRT 83
Query: 150 SVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPT--FTAEGFELSVGTNHLGHFLLSRL 206
+ + L++LV NA V + FT + + + +GTN + LS++
Sbjct: 84 ERDKLMQTVAHVFDGKLNILVNNAGV---VIHKEAKDFTEKDYNIIMGTNFEAAYHLSQI 140
Query: 207 LLDDLKQSDYPSKRLII-VGSITG 229
LK S + +I + SI G
Sbjct: 141 AYPLLKASQNGN---VIFLSSIAG 161
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} Length = 255 | Back alignment and structure |
|---|
Score = 69.0 bits (170), Expect = 9e-14
Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 2/116 (1%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
++TG++ GLG A A+ LA G +I+ + + + + D+
Sbjct: 13 LVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDEL 71
Query: 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
++ G +D+L+ NA + E ++ + TN FL+SR
Sbjct: 72 AIEAAFSKLDAEGIHVDILINNAGIQYRKPMV-ELELENWQKVIDTNLTSAFLVSR 126
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} Length = 250 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 1e-13
Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 10/145 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA---KSAGMAKENYTIMHLDL 145
IITGAS G+G A LA G + +++ R E+ + + ++ LD+
Sbjct: 10 AIITGASQGIGAVIAAGLATDG-YRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDI 68
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+ + +D+LV AA+++ + + F + N + + + +
Sbjct: 69 TDCTKADTEIKDIHQKYGAVDILVNAAAMFMDGSLSEPV--DNFRKIMEINVIAQYGILK 126
Query: 206 LLLDD-LKQSDYPSKRLIIVGSITG 229
+ + Q + + V S
Sbjct: 127 TVTEIMKVQK---NGYIFNVASRAA 148
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* Length = 302 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 1e-13
Identities = 28/147 (19%), Positives = 51/147 (34%), Gaps = 10/147 (6%)
Query: 66 MATASPAVDVSSPQGKKTLRKGS-----VIITGASSGLGLATAKALAETGKWHIIMACRD 120
M T + SP K L S ITG +GLG L+ G ++A R
Sbjct: 1 MNTEALQSKFFSPLQKAMLPPNSFQGKVAFITGGGTGLGKGMTTLLSSLG-AQCVIASRK 59
Query: 121 FLKAERAAKS-AGMAKENYTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPT 178
+ A+ + + D+ D V+ V + +G ++++ NAA +
Sbjct: 60 MDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGH-PNIVINNAAGNFIS 118
Query: 179 AKEPTFTAEGFELSVGTNHLGHFLLSR 205
E + ++ G ++
Sbjct: 119 PTE-RLSPNAWKTITDIVLNGTAFVTL 144
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A Length = 252 | Back alignment and structure |
|---|
Score = 68.3 bits (168), Expect = 2e-13
Identities = 37/156 (23%), Positives = 64/156 (41%), Gaps = 9/156 (5%)
Query: 79 QGKKTLRKGSVI-ITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA---KSAGMA 134
Q K+ L +I +TGAS G+G A A G +I+ R+ K + A
Sbjct: 4 QPKQDLLNDRIILVTGASDGIGREAAMTYARYGA-TVILLGRNEEKLRQVASHINEETGR 62
Query: 135 KENYTIMHLDLASLDSVRQFVDT-FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSV 193
+ + I+ L + ++ +Q R LD ++ NA + + ++ +
Sbjct: 63 QPQWFILDLLTCTSENCQQLAQRIAVNYPR-LDGVLHNAGLLGDVCPMSEQNPQVWQDVM 121
Query: 194 GTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
N F+L++ LL L +SD S L+ S G
Sbjct: 122 QVNVNATFMLTQALLPLLLKSDAGS--LVFTSSSVG 155
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} Length = 324 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 2e-13
Identities = 46/155 (29%), Positives = 65/155 (41%), Gaps = 13/155 (8%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRD-----FLKAERAAKSAGMAKENYTIMHL 143
++ITGASSG G TA+ALA G + + RD E A A + + L
Sbjct: 8 ILITGASSGFGRLTAEALAGAG-HRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLEL 66
Query: 144 DLASLDSVRQFVDT-FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 202
D+ S SV + +D GR +DVL+ NA + E FT E F N L
Sbjct: 67 DVQSQVSVDRAIDQIIGEDGR-IDVLIHNAGHMVFGPAE-AFTPEQFAELYDINVLSTQR 124
Query: 203 LSRLLLDDL-KQSDYPSKRLIIVGSITGNTNTLAG 236
++R L + +Q LI + S + T
Sbjct: 125 VNRAALPHMRRQK---HGLLIWISSSSSAGGTPPY 156
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} Length = 230 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 3e-13
Identities = 28/151 (18%), Positives = 45/151 (29%), Gaps = 13/151 (8%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++ITGASSGLG AK G + R + + N DLAS
Sbjct: 4 IVITGASSGLGAELAKLYDAEG-KATYLTGRS---ESKLSTVTNCLSNNVGYRARDLASH 59
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
V Q + +V ++A E + + N + R L+
Sbjct: 60 QEVEQLFEQLDSI---PSTVV-HSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELV 115
Query: 209 DDLKQSDYPSKRLII-VGSITGNTNTLAGNV 238
K ++ + S +
Sbjct: 116 KRYKD----QPVNVVMIMSTAAQQPKAQEST 142
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} Length = 301 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 4e-13
Identities = 37/174 (21%), Positives = 64/174 (36%), Gaps = 11/174 (6%)
Query: 57 RNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIM 116
G + AQT S +S G+ ++TG +SG+GLATA A G +++
Sbjct: 8 HMGTLEAQTQGPGSMDGFLSGFDGRA------AVVTGGASGIGLATATEFARRG-ARLVL 60
Query: 117 ACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVY 175
+ D E+A + + D+ LD + + D FR G +DV+ NA +
Sbjct: 61 SDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLGG-VDVVFSNAGI- 118
Query: 176 LPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
+ + + + + G L L + + S G
Sbjct: 119 VVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGG-HIAFTASFAG 171
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* Length = 265 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 5e-13
Identities = 33/145 (22%), Positives = 50/145 (34%), Gaps = 10/145 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS--AGMAKENYTIMHLDLA 146
++TG SSG+GLAT + L E G + RD + A + D+
Sbjct: 11 AVVTGGSSGIGLATVELLLEAG-AAVAFCARDGERLRAAESALRQRFPGARLFASVCDVL 69
Query: 147 SLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
VR F + R G +LV NA + T E + + R
Sbjct: 70 DALQVRAFAEACERTLGC-ASILVNNAGQGRVSTFA-ETTDEAWSEELQLKFFSVIHPVR 127
Query: 206 LLLDDLKQSDYPSKRLII-VGSITG 229
L L+ + I+ V S+
Sbjct: 128 AFLPQLESRADAA---IVCVNSLLA 149
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} Length = 244 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 7e-13
Identities = 23/141 (16%), Positives = 47/141 (33%), Gaps = 17/141 (12%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TG S G+G A + L + H ++ + EN + DL
Sbjct: 7 YLVTGGSKGIGKAVVELLLQNK-NHTVINID---------IQQSFSAENLKFIKADLTKQ 56
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
+ +D ++ D + NA + + + E + + N + L
Sbjct: 57 QDITNVLDII-KNVS-FDGIFLNAGILIKGSIFDI-DIESIKKVLDLNVWSSIYFIKGLE 113
Query: 209 DDLKQSDYPSKRLIIVGSITG 229
++LK ++ GS
Sbjct: 114 NNLKV----GASIVFNGSDQC 130
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 Length = 270 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 8e-13
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 7/127 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V++TG G+G +A +G +++ +D + A + D+
Sbjct: 12 VVVTGGGRGIGAGIVRAFVNSG-ARVVICDKDESGGRALEQELPGA----VFILCDVTQE 66
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
D V+ V T RR GR LD +V NA + P + +A+GF + N LG + L++L
Sbjct: 67 DDVKTLVSETIRRFGR-LDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLA 125
Query: 208 LDDLKQS 214
L L++S
Sbjct: 126 LPYLRKS 132
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* Length = 260 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 1e-12
Identities = 31/144 (21%), Positives = 58/144 (40%), Gaps = 11/144 (7%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
++TG S G+G + LA G + R+ + DL+S
Sbjct: 13 LVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRS 71
Query: 150 SVRQFVDTFRR--SGRPLDVLVCNAAVYLPTAKEPT--FTAEGFELSVGTNHLGHFLLSR 205
++ ++T G+ L++LV NA + + +T E + L + N + LS
Sbjct: 72 ERQELMNTVANHFHGK-LNILVNNAGI---VIYKEAKDYTVEDYSLIMSINFEAAYHLSV 127
Query: 206 LLLDDLKQSDYPSKRLIIVGSITG 229
L LK S+ ++ + S++G
Sbjct: 128 LAHPFLKASERG--NVVFISSVSG 149
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} Length = 276 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 1e-12
Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 13/156 (8%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+ITGAS+G+G A A AE G + +A R + A + D+
Sbjct: 35 ALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQP 93
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPT--FTAEGFELSVGTNHLGHFLLSR 205
D VR +D G +D+ VCNA + + + E F+ TN G FL ++
Sbjct: 94 DQVRGMLDQMTGELGG-IDIAVCNAGI---VSVQAMLDMPLEEFQRIQDTNVTGVFLTAQ 149
Query: 206 LLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241
+ +I S++G N+P +
Sbjct: 150 AAARAMVDQGLGG-TIITTASMSG----HIINIPQQ 180
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} Length = 279 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 1e-12
Identities = 33/153 (21%), Positives = 61/153 (39%), Gaps = 10/153 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+TG+S G+G A A+A A+ G + + E+A + +++
Sbjct: 37 ASVTGSSGGIGWAVAEAYAQAGA-DVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDP 95
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAV-YLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
SV + + + G +DV V NA V + + + + + + G + S
Sbjct: 96 KSVEETISQQEKDFGT-IDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHN 154
Query: 207 LLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239
+ K++ S LII SI+G N+P
Sbjct: 155 IGKIFKKNGKGS--LIITSSISG----KIVNIP 181
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* Length = 260 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 1e-12
Identities = 30/142 (21%), Positives = 64/142 (45%), Gaps = 5/142 (3%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++T ++ G+GLA A+ LA+ G H++++ R +R + + T +
Sbjct: 17 ALVTASTDGIGLAIARRLAQDGA-HVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKA 75
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
+ + V G +D+LV NAAV T E ++ + N L+++ +
Sbjct: 76 EDRERLVAMAVNLHGG-VDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAV 134
Query: 208 LDDLKQSDYPSKRLIIVGSITG 229
+ ++++ S ++IV S+
Sbjct: 135 VPEMEKRGGGS--VLIVSSVGA 154
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 280 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 1e-12
Identities = 32/133 (24%), Positives = 64/133 (48%), Gaps = 9/133 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK---SAGMAKENYTIMHLDL 145
VIITG+S+G+G TA A+ G ++ + R + E + +G++++ + D+
Sbjct: 9 VIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADV 67
Query: 146 ASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPT---FTAEGFELSVGTNHLGHF 201
+ D Q ++ T ++ G+ +DVLV NA +P A T + + ++ N
Sbjct: 68 TTEDGQDQIINSTLKQFGK-IDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVI 126
Query: 202 LLSRLLLDDLKQS 214
+++ + L S
Sbjct: 127 EMTKKVKPHLVAS 139
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} Length = 271 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 1e-12
Identities = 36/119 (30%), Positives = 53/119 (44%), Gaps = 7/119 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
IITGA G+GL T++ LA G +++A AA S G +DL +
Sbjct: 14 AIITGACGGIGLETSRVLARAG-ARVVLADLPETDLAGAAASVG---RGAVHHVVDLTNE 69
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSR 205
SVR +D T GR LD++ NAA P T + ++ + N G L+ +
Sbjct: 70 VSVRALIDFTIDTFGR-LDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCK 127
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} Length = 346 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 2e-12
Identities = 35/159 (22%), Positives = 60/159 (37%), Gaps = 12/159 (7%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE------NYTIMH 142
V ITGAS G+G A A A+ G +I A + A+E
Sbjct: 48 VFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCI 107
Query: 143 LDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 201
+D+ + V+ ++ G +D+LV NA+ T T + +L + N G +
Sbjct: 108 VDVRDEQQISAAVEKAIKKFGG-IDILVNNASAISLTNTLDT-PTKRLDLMMNVNTRGTY 165
Query: 202 LLSRLLLDDLKQSDYPSKRLIIVGSITG-NTNTLAGNVP 239
L S+ + LK+S ++ + N +
Sbjct: 166 LASKACIPYLKKSKVA--HILNISPPLNLNPVWFKQHCA 202
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* Length = 277 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 2e-12
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 5/119 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMH-LDLAS 147
ITG SG+G A+ G H ++A R + AA+ A + +D+ +
Sbjct: 30 AFITGGGSGIGFRIAEIFMRHG-CHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRA 88
Query: 148 LDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+V VD + GR +D+L+ AA + F+ + + G F +SR
Sbjct: 89 PPAVMAAVDQALKEFGR-IDILINCAAGNFLCPAG-ALSFNAFKTVMDIDTSGTFNVSR 145
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 Length = 262 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 2e-12
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 3/118 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGA +GLATA LAE G I + + E+A S D+ S
Sbjct: 10 CLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTSE 68
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
++V VD R G+ +D L NA A + ++ F + N G F + +
Sbjct: 69 EAVIGTVDSVVRDFGK-IDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLK 125
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 297 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 3e-12
Identities = 32/146 (21%), Positives = 62/146 (42%), Gaps = 10/146 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK---SAGMAKENYTIMHLDL 145
VIITG+S+G+G + A A+ G + + R+ + E + AG+ E + D+
Sbjct: 29 VIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADV 87
Query: 146 ASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPT-FTAEGFELSVGTNHLGHFLL 203
++ T + G+ +D+LV NA L T E ++ + N +
Sbjct: 88 TEASGQDDIINTTLAKFGK-IDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEM 146
Query: 204 SRLLLDDLKQSDYPSKRLIIVGSITG 229
++ + L ++ ++ V SI
Sbjct: 147 TQKTKEHLIKT---KGEIVNVSSIVA 169
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} Length = 274 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 3e-12
Identities = 38/159 (23%), Positives = 56/159 (35%), Gaps = 12/159 (7%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE------NYTIMH 142
+ ITGAS G+GLA A A G I A + A +
Sbjct: 9 LFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALK 68
Query: 143 LDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 201
D+ D VR V T G +D+LV NA+ T + F+L N G F
Sbjct: 69 CDIREEDQVRAAVAATVDTFGG-IDILVNNASAIWLRGTLDT-PMKRFDLMQQVNARGSF 126
Query: 202 LLSRLLLDDLKQSDYPSKRLIIVGSITG-NTNTLAGNVP 239
+ ++ L L Q+ P ++ + N +
Sbjct: 127 VCAQACLPHLLQAPNP--HILTLAPPPSLNPAWWGAHTG 163
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} Length = 281 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 3e-12
Identities = 37/157 (23%), Positives = 64/157 (40%), Gaps = 11/157 (7%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHL--DLA 146
+ITG++SG+GLA A+ LA+ G +I++ R + T++H D+
Sbjct: 28 AVITGSTSGIGLAIARTLAKAGA-NIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMT 86
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
+ + D+LV NA V K F E ++ + N F R
Sbjct: 87 KPSEIADMMAMVADRFGGADILVNNAGVQ-FVEKIEDFPVEQWDRIIAVNLSSSFHTIRG 145
Query: 207 LLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243
+ +K+ + R+I + S G L + P K+
Sbjct: 146 AIPPMKKKGW--GRIINIASAHG----LVAS-PFKSA 175
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} Length = 281 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 3e-12
Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 9/126 (7%)
Query: 86 KGSV-IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD 144
+G+ I++G + GLG AT + L G +++A K + A G + +
Sbjct: 29 EGASAIVSGGAGGLGEATVRRLHADGL-GVVIADLAAEKGKALADELG---NRAEFVSTN 84
Query: 145 LASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLP----TAKEPTFTAEGFELSVGTNHLGH 200
+ S DSV ++ + GR +V + + GF ++ G
Sbjct: 85 VTSEDSVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGT 144
Query: 201 FLLSRL 206
+ ++RL
Sbjct: 145 YNVARL 150
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} Length = 285 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 3e-12
Identities = 35/158 (22%), Positives = 60/158 (37%), Gaps = 11/158 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE------NYTIMH 142
+ I+G S G+GLA AK +A G ++A + AKE +
Sbjct: 12 MFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIV 71
Query: 143 LDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 201
D+ D+V V T + G +D+ V NA+ + E + F+L G G +
Sbjct: 72 GDIRDGDAVAAAVAKTVEQFGG-IDICVNNASAINLGSIE-EVPLKRFDLMNGIQVRGTY 129
Query: 202 LLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239
+S+ + +K D P ++ + P
Sbjct: 130 AVSQSCIPHMKGRDNP--HILTLSPPIRLEPKWLRPTP 165
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} Length = 273 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 4e-12
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 4/116 (3%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
++TGA SG+G A A A G H++ R + A + + DLA L+
Sbjct: 35 VVTGAGSGIGRAIAHGYARAGA-HVLAWGRT-DGVKEVADEIADGGGSAEAVVADLADLE 92
Query: 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+ + R +DVLV NA + E + + + N ++LSR
Sbjct: 93 GAANVAEELAATRR-VDVLVNNAGIIARAPAE-EVSLGRWREVLTVNLDAAWVLSR 146
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} Length = 257 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 4e-12
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 12/125 (9%)
Query: 86 KGSV-IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD 144
+ +V ++TG +SGLGLAT K L + G +++ D ++ E G + D
Sbjct: 8 RDAVAVVTGGASGLGLATTKRLLDAGAQVVVL---D-IRGEDVVADLG---DRARFAAAD 60
Query: 145 LASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPT---AKEPTFTAEGFELSVGTNHLGHF 201
+ +V +D G L ++V A +++ F+ F V N +G F
Sbjct: 61 VTDEAAVASALDLAETMG-TLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSF 119
Query: 202 LLSRL 206
+ RL
Sbjct: 120 NVLRL 124
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* Length = 281 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 5e-12
Identities = 27/146 (18%), Positives = 50/146 (34%), Gaps = 13/146 (8%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+ITG +SGLG A G + + + + + G N + D+ SL
Sbjct: 8 ALITGGASGLGRALVDRFVAEG-ARVAVLDKSAERLRELEVAHG---GNAVGVVGDVRSL 63
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTA----KEPTFTAEGFELSVGTNHLGHFLL 203
++ + G+ +D L+ NA ++ + F+ N G+
Sbjct: 64 QDQKRAAERCLAAFGK-IDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHA 122
Query: 204 SRLLLDDLKQSDYPSKRLIIVGSITG 229
+ L L S ++ S G
Sbjct: 123 VKACLPALVSS---RGSVVFTISNAG 145
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} Length = 277 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 5e-12
Identities = 38/141 (26%), Positives = 57/141 (40%), Gaps = 7/141 (4%)
Query: 66 MATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE 125
M T L I+TGA +G+GLA A+ LA+ G H++ A D A+
Sbjct: 9 MGTLEAQTQGPGSMNHPDLAGKVAIVTGAGAGIGLAVARRLADEG-CHVLCADIDGDAAD 67
Query: 126 RAAKSAGMAKENYTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTF 184
AA G +D++ + VD G +D LV NA V +
Sbjct: 68 AAATKIG---CGAAACRVDVSDEQQIIAMVDACVAAFGG-VDKLVANAGVVHLASLI-DT 122
Query: 185 TAEGFELSVGTNHLGHFLLSR 205
T E F+ + N G +L ++
Sbjct: 123 TVEDFDRVIAINLRGAWLCTK 143
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A Length = 266 | Back alignment and structure |
|---|
Score = 64.4 bits (158), Expect = 5e-12
Identities = 33/148 (22%), Positives = 53/148 (35%), Gaps = 14/148 (9%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
++TG + G+G A + A G I R+ + T D +
Sbjct: 18 LVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRP 76
Query: 150 SVRQFVDTFRRS-GRPLDVLVCNAAVYLPTAKEPT--FTAEGFELSVGTNHLGHFLLSRL 206
+ + T G LD+L+ N +PT +TAE F + TN + LS+L
Sbjct: 77 EREKLMQTVSSMFGGKLDILINNLGA---IRSKPTLDYTAEDFSFHISTNLESAYHLSQL 133
Query: 207 LLDDLKQSDYPSKRLII----VGSITGN 230
LK S + II + +
Sbjct: 134 AHPLLKASGCGN---IIFMSSIAGVVSA 158
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* Length = 265 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 6e-12
Identities = 38/127 (29%), Positives = 53/127 (41%), Gaps = 10/127 (7%)
Query: 86 KGSV-IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD 144
KG V +ITG +SGLGLATA+ L G ++ E AK G N D
Sbjct: 11 KGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKLG---NNCVFAPAD 66
Query: 145 LASLDSVRQFVDTFRRSGRPLDVLVCNAAV-----YLPTAKEPTFTAEGFELSVGTNHLG 199
+ S V+ + + +DV V A + K T T E F+ + N +G
Sbjct: 67 VTSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMG 126
Query: 200 HFLLSRL 206
F + RL
Sbjct: 127 TFNVIRL 133
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} Length = 255 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 6e-12
Identities = 45/191 (23%), Positives = 60/191 (31%), Gaps = 38/191 (19%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+ ITG++SG+G A + LA G +I R DL++
Sbjct: 4 IAITGSASGIGAALKELLARAG-HTVIGIDRG---QADIEA--------------DLSTP 45
Query: 149 DSVRQFVDT-FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
V R G LD LVC A V TA L V N+ G L L
Sbjct: 46 GGRETAVAAVLDRCGGVLDGLVCCAGV--------GVTAANSGLVVAVNYFGVSALLDGL 97
Query: 208 LDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGD 267
+ L + P+ V ++A P A L + G G
Sbjct: 98 AEALSRGQQPA----AV-----IVGSIAATQPGAAELPMVEAMLAGDEARAIELAEQQG- 147
Query: 268 FDGAKAYKDSK 278
AY SK
Sbjct: 148 -QTHLAYAGSK 157
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* Length = 255 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 7e-12
Identities = 30/151 (19%), Positives = 52/151 (34%), Gaps = 13/151 (8%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
IITGA +G+G A A G ++++ + A D+ S
Sbjct: 14 AIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSE 72
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
+ D + G+ +D+LV NA P + F + N F LS+L+
Sbjct: 73 QELSALADFAISKLGK-VDILVNNAGGGGPKPFD--MPMADFRRAYELNVFSFFHLSQLV 129
Query: 208 LDD-LKQSDYPSKRLIIVGSITGNTNTLAGN 237
+ K ++ + S+ N
Sbjct: 130 APEMEKNG---GGVILTITSMAA----ENKN 153
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} Length = 281 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 8e-12
Identities = 36/141 (25%), Positives = 53/141 (37%), Gaps = 11/141 (7%)
Query: 91 ITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDS 150
+TGASSG G A A+A G +I R E + + LD+ +
Sbjct: 10 VTGASSGFGRAIAEAAVAAG-DTVIGTARR---TEALDDLVAAYPDRAEAISLDVTDGER 65
Query: 151 VRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLD 209
+ R GR +DVLV NA A E T + G L+R LL
Sbjct: 66 IDVVAADVLARYGR-VDVLVNNAGRTQVGAFE-ETTERELRDLFELHVFGPARLTRALLP 123
Query: 210 DL-KQSDYPSKRLIIVGSITG 229
+ ++ S ++ + S G
Sbjct: 124 QMRERG---SGSVVNISSFGG 141
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 Length = 303 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 8e-12
Identities = 36/166 (21%), Positives = 68/166 (40%), Gaps = 14/166 (8%)
Query: 76 SSPQGKKTLRKGS-----VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK- 129
S +G+ L G I+TG ++G+G A K L E G ++++A R + + AA
Sbjct: 3 SWAKGRSYLAPGLLQGQVAIVTGGATGIGKAIVKELLELG-SNVVIASRKLERLKSAADE 61
Query: 130 ----SAGMAKENYTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTF 184
+ + ++ + + V V T G+ ++ LV N + E
Sbjct: 62 LQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLDTFGK-INFLVNNGGGQFLSPAE-HI 119
Query: 185 TAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 230
+++G+ + TN G F + + + + S IIV + G
Sbjct: 120 SSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKAGF 165
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* Length = 254 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 1e-11
Identities = 28/144 (19%), Positives = 53/144 (36%), Gaps = 13/144 (9%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDL-AS 147
VI A G+GL T++ L + + ++ R A A K N T D+
Sbjct: 8 VIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVP 67
Query: 148 LDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
+ ++ + F + +D+L+ A + E ++ N G +
Sbjct: 68 VAESKKLLKKIFDQLKT-VDILINGAGI---------LDDHQIERTIAINFTGLVNTTTA 117
Query: 207 LLDDLKQSDYPSKRLII-VGSITG 229
+LD + +I + S+TG
Sbjct: 118 ILDFWDKRKGGPGGIIANICSVTG 141
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} Length = 257 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 1e-11
Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 8/125 (6%)
Query: 86 KGSV-IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD 144
K V I+TGASSGLG A + LA+ G ++ E A G + D
Sbjct: 6 KSRVFIVTGASSGLGAAVTRMLAQEGA-TVLGLDLKPPAGEEPAAELG---AAVRFRNAD 61
Query: 145 LASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPT---AKEPTFTAEGFELSVGTNHLGHF 201
+ + + ++ + LV A + + F +V N +G F
Sbjct: 62 VTNEADATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTF 121
Query: 202 LLSRL 206
+ RL
Sbjct: 122 NMIRL 126
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} Length = 257 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 1e-11
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
VIITG SSG+G A A+ G +++ R K E A + +D+ +
Sbjct: 9 VIITGGSSGMGKGMATRFAKEG-ARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNT 67
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
D +++ ++ + GR +D+L+ NAA E + G+ + G F S+
Sbjct: 68 DDIQKMIEQIDEKFGR-IDILINNAAGNFICPAE-DLSVNGWNSVINIVLNGTFYCSQ 123
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A Length = 255 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 1e-11
Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 11/161 (6%)
Query: 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMH 142
TL+ + ++TG++SG+GL A+ LA G +I++ F A
Sbjct: 1 TLKGKTALVTGSTSGIGLGIAQVLARAGA-NIVLN--GFGDPAPALAEIARHGVKAVHHP 57
Query: 143 LDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 202
DL+ + + R +D+LV NA + A F E ++ + N F
Sbjct: 58 ADLSDVAQIEALFALAEREFGGVDILVNNAGIQ-HVAPVEQFPLESWDKIIALNLSAVFH 116
Query: 203 LSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243
+RL L ++ ++ R+I + S+ G L G+ KA
Sbjct: 117 GTRLALPGMRARNW--GRIINIASVHG----LVGS-TGKAA 150
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} Length = 207 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 1e-11
Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 19/145 (13%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V+ITGA+ GLG A A+AL G ++++ R A+ G + DLA
Sbjct: 3 VLITGATGGLGGAFARALK--G-HDLLLSGRRAGALAELAREVGA-----RALPADLADE 54
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
+ ++ LD+LV + + E + + L + +L
Sbjct: 55 LEAKALLEEAGP----LDLLVHAVGKAGRASVR-EAGRDLVEEMLAAH----LLTAAFVL 105
Query: 209 DDLKQSDYPSKRLIIVGSITGNTNT 233
+ R + G+
Sbjct: 106 KHARFQKGA--RAVFFGAYPRYVQV 128
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} Length = 277 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 1e-11
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 7/118 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
I+TG SG+G ATA+ A+ G ++++A + A R A G + +D++S
Sbjct: 30 CIVTGGGSGIGRATAELFAKNG-AYVVVADVNEDAAVRVANEIG---SKAFGVRVDVSSA 85
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
V+ T + GR +DVLV NA T E ++ + N G FL S+
Sbjct: 86 KDAESMVEKTTAKWGR-VDVLVNNAGFGTTGNVV-TIPEETWDRIMSVNVKGIFLCSK 141
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} Length = 267 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 1e-11
Identities = 25/143 (17%), Positives = 55/143 (38%), Gaps = 10/143 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK--SAGMAKENYTIMHLDLA 146
++TG+++G+G A A +L G ++++ R K A + DL
Sbjct: 13 ALVTGSTAGIGKAIATSLVAEGA-NVLINGRREENVNETIKEIRAQYPDAILQPVVADLG 71
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
+ + ++ + + +D+L+ N ++ P E + N + L+R
Sbjct: 72 TEQGCQDVIEKY---PK-VDILINNLGIFEPVEYF-DIPDEDWFKLFEVNIMSGVRLTRS 126
Query: 207 LLDDLKQSDYPSKRLIIVGSITG 229
L + + R+I + S
Sbjct: 127 YLKKMIERKEG--RVIFIASEAA 147
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* Length = 260 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 2e-11
Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 11/157 (7%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHL--DLA 146
++TG++SG+GL A ALA G I++ ++ A+ +++ DL+
Sbjct: 7 AVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLS 65
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
++VR VD R +D+LV NA + E F E ++ + N F +
Sbjct: 66 KGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIE-DFPTEKWDAILALNLSAVFHGTAA 124
Query: 207 LLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243
L +K+ + R+I + S G L + K+
Sbjct: 125 ALPHMKKQGF--GRIINIASAHG----LVAS-ANKSA 154
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} Length = 250 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 2e-11
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 6/121 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDLAS 147
I+TGASSG GLA A G + E A++ A + + D+A
Sbjct: 5 AIVTGASSGNGLAIATRFLARG-DRVAALDLSAETLEETARTHWHAYADKVLRVRADVAD 63
Query: 148 LDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEP--TFTAEGFELSVGTNHLGHFLLS 204
V + T + G +DVLV NA + + T E F+ + N G FL
Sbjct: 64 EGDVNAAIAATMEQFGA-IDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGC 122
Query: 205 R 205
R
Sbjct: 123 R 123
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 2e-11
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 7/119 (5%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDLASL 148
++TG S GLG A+ LAE G +++A R+ +A AA+ D+++
Sbjct: 25 LVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNY 83
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEP--TFTAEGFELSVGTNHLGHFLLSR 205
+ V++ ++ + LD +V A + + P F + F + N G + + R
Sbjct: 84 EEVKKLLEAVKEKFGKLDTVVNAAGI---NRRHPAEEFPLDEFRQVIEVNLFGTYYVCR 139
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A Length = 251 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 2e-11
Identities = 40/143 (27%), Positives = 61/143 (42%), Gaps = 8/143 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
IITG + G+GLA A E G +++ R E+AAKS G + D +
Sbjct: 9 AIITGGTLGIGLAIATKFVEEG-AKVMITGRHSDVGEKAAKSVG-TPDQIQFFQHDSSDE 66
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
D + D T + G + LV NA + + + E T + + N G F +RL
Sbjct: 67 DGWTKLFDATEKAFGP-VSTLVNNAGIAVNKSVE-ETTTAEWRKLLAVNLDGVFFGTRLG 124
Query: 208 LDDLKQSDYPSKRLII-VGSITG 229
+ +K + II + SI G
Sbjct: 125 IQRMKNKGLGAS--IINMSSIEG 145
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} Length = 253 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 2e-11
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 5/120 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
I+TG+ G+G A A+ALA G +++A + AE AK + +D++
Sbjct: 12 GIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDP 70
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTF--TAEGFELSVGTNHLGHFLLSR 205
+S + D T G +D LV NAA++ + E ++ + N G +R
Sbjct: 71 ESAKAMADRTLAEFGG-IDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTR 129
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 3e-11
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 5/120 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIM--HLDLA 146
V+ITG SGLG ATA LA G + + E + + + ++ D++
Sbjct: 16 VLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVS 74
Query: 147 SLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
V +V T R GR +D NA + +FTA F+ V N G FL
Sbjct: 75 DEAQVEAYVTATTERFGR-IDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLE 133
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* Length = 278 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 3e-11
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 5/116 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
IITG + G+G TAK G +++A ++ + G + + + +H D+
Sbjct: 19 AIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIG-SPDVISFVHCDVTKD 76
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPT-FTAEGFELSVGTNHLGHFL 202
+ VR VD T + G+ LD++ N V T E F+ + N G FL
Sbjct: 77 EDVRNLVDTTIAKHGK-LDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFL 131
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 Length = 256 | Back alignment and structure |
|---|
Score = 61.7 bits (151), Expect = 4e-11
Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 10/118 (8%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V++TG + G+G A A+A A G + + E A G +DL
Sbjct: 9 VLVTGGARGIGRAIAQAFAREG-ALVALCDLRPEGKEVAEAIGGAF------FQVDLEDE 61
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+FV+ GR +DVLV NAA+ P + + + N LS
Sbjct: 62 RERVRFVEEAAYALGR-VDVLVNNAAIAAPGSALTV-RLPEWRRVLEVNLTAPMHLSA 117
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} Length = 293 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 4e-11
Identities = 41/192 (21%), Positives = 63/192 (32%), Gaps = 21/192 (10%)
Query: 52 REFSQRNGVVRAQTMATASPAVDVSSPQGK----KTLRKGSVIITGASSGLGLATAKALA 107
G + AQT S V S+ + L SV++TG + G+G A A
Sbjct: 3 HHHHHHMGTLEAQTQGPGSMLVVESAEPAERKVMFDLSARSVLVTGGTKGIGRGIATVFA 62
Query: 108 ETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167
G + A + A+ + N + LD++ S T + LDV
Sbjct: 63 RAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAFGALDV 122
Query: 168 LVCNAAVY----LPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDD-LKQSDYPSKRLI 222
+ NA ++ L T E + N G + L R+I
Sbjct: 123 VCANAGIFPEARLDTMTP-----EQLSEVLDVNVKGTVYTVQACLAPLTASG---RGRVI 174
Query: 223 ----IVGSITGN 230
I G +TG
Sbjct: 175 LTSSITGPVTGY 186
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 Length = 246 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 5e-11
Identities = 33/152 (21%), Positives = 54/152 (35%), Gaps = 19/152 (12%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+I+T A+ G+G A A A A G +I + K + K G+ LD+
Sbjct: 9 IILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELEKYPGIQ-----TRVLDVTKK 62
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
+ QF + R LDVL A + ++ S+ N +L+ + L
Sbjct: 63 KQIDQFANEVER----LDVLFNVAGFVHHGTVLDC-EEKDWDFSMNLNVRSMYLMIKAFL 117
Query: 209 DDLKQSDYPSKRLII-----VGSITGNTNTLA 235
+ + II S+ G N
Sbjct: 118 PKMLAQKSGN---IINMSSVASSVKGVVNRCV 146
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* Length = 254 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 6e-11
Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 7/115 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
VIITG + GLG A+ G +++A + A+ G + HLD+
Sbjct: 8 VIITGGARGLGAEAARQAVAAG-ARVVLADVLDEEGAATARELG---DAARYQHLDVTIE 63
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 202
+ ++ V G +D LV NA + E T + E F V N G F+
Sbjct: 64 EDWQRVVAYAREEFGS-VDGLVNNAGISTGMFLE-TESVERFRKVVEINLTGVFI 116
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 Length = 253 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 6e-11
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 7/115 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TG +SG+GL K L G + + + ++ A G E + D++S
Sbjct: 9 ALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELG---ERSMFVRHDVSSE 64
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 202
+ RR G L+VLV NA + LP E T E F + N F+
Sbjct: 65 ADWTLVMAAVQRRLGT-LNVLVNNAGILLPGDME-TGRLEDFSRLLKINTESVFI 117
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} Length = 280 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 7e-11
Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 3/118 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
I+TGASSG+G A A A G +++ R+ + D+
Sbjct: 11 AIVTGASSGIGRAAALLFAREGA-KVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDE 69
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
V+ RR G LD NA + + + EG+ ++ TN FL ++
Sbjct: 70 ALHEALVELAVRRFGG-LDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAK 126
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} Length = 269 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 7e-11
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 14/118 (11%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
I+TG SSG+GLA AL G ++ D + +D+ +
Sbjct: 17 AIVTGGSSGIGLAVVDALVRYG-AKVVSVSLDEKSDVNVSDH----------FKIDVTNE 65
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+ V++ V+ T ++ GR +D+LV NA + + E + + N G +L+++
Sbjct: 66 EEVKEAVEKTTKKYGR-IDILVNNAGIEQYSPLH-LTPTEIWRRIIDVNVNGSYLMAK 121
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A Length = 259 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 1e-10
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 7/118 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+ITG++ G+G A A+A G + +A D +A +AA G + +D+
Sbjct: 11 ALITGSARGIGRAFAEAYVREGA-TVAIADIDIERARQAAAEIG---PAAYAVQMDVTRQ 66
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
DS+ + T +G LD+LV NAA++ A T E +E N G +
Sbjct: 67 DSIDAAIAATVEHAGG-LDILVNNAALF-DLAPIVEITRESYEKLFAINVAGTLFTLQ 122
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* Length = 258 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 1e-10
Identities = 38/159 (23%), Positives = 63/159 (39%), Gaps = 9/159 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V+ITG+S G+GLATA+ A G + + + S + DLA+
Sbjct: 10 VLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATS 69
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
++ +Q VD + G +DVL+ NA + P ++ + N + ++
Sbjct: 70 EACQQLVDEFVAKFGG-IDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFA 128
Query: 208 LDDLKQSDYPSKRL--II-VGSITGNTNTLAGNVPPKAN 243
L L + S + +I GSI G G P
Sbjct: 129 LPHLAAAAKASGQTSAVISTGSIAG----HTGGGPGAGL 163
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} Length = 254 | Back alignment and structure |
|---|
Score = 59.4 bits (145), Expect = 2e-10
Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 3/118 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
VI+TGA SG+G A AK A ++ + + + + + D++
Sbjct: 10 VIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKK 68
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
V +FV TF R +DVL NA + + E +E + N F SR
Sbjct: 69 KDVEEFVRRTFETYSR-IDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSR 125
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} Length = 319 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 2e-10
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK--SAGMAKENYT 139
K + +TG ++G+G+ + L G + +A ++A A +
Sbjct: 4 KDFAGRTAFVTGGANGVGIGLVRQLLNQG-CKVAIADIRQDSIDKALATLEAEGSGPEVM 62
Query: 140 IMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAV 174
+ LD+AS + + D R G + +L NA V
Sbjct: 63 GVQLDVASREGFKMAADEVEARFGP-VSILCNNAGV 97
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} Length = 279 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 2e-10
Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
Query: 78 PQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKEN 137
P+G R + +TG SSG+GLA A+ LA G + RD A A +
Sbjct: 16 PRGSHMSRPQTAFVTGVSSGIGLAVARTLAARG-IAVYGCARDAKNVSAAVDGLRAAGHD 74
Query: 138 YTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNA 172
D+ S D V V P+ +LV +A
Sbjct: 75 VDGSSCDVTSTDEVHAAVAAAVERFGPIGILVNSA 109
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} Length = 262 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 2e-10
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGAS G+G A A+ L G +++ RD K + A DL+
Sbjct: 32 AVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHS 90
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAV 174
D++ F GR DVLV NA V
Sbjct: 91 DAIAAFATGVLAAHGR-CDVLVNNAGV 116
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} Length = 244 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 2e-10
Identities = 19/119 (15%), Positives = 37/119 (31%), Gaps = 11/119 (9%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
++T A G A +AL + G + ++ F A + +
Sbjct: 5 LVTHARHFAGPAAVEALTQDG-YTVVCHDASFADAAERQRFESEN------PGTIALAEQ 57
Query: 150 SVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEP--TFTAEGFELSVGTNHLGHFLLSR 205
+ VD T + +D +V N + P + P + + LL +
Sbjct: 58 KPERLVDATLQHGEA-IDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQ 115
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 Length = 274 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 3e-10
Identities = 31/171 (18%), Positives = 55/171 (32%), Gaps = 5/171 (2%)
Query: 66 MATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE 125
MA ++ K L + TGA G+G A L G ++ AE
Sbjct: 1 MAPSADITSSGPSDASKPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAE 60
Query: 126 RAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFT 185
+ D++ V D LD ++ N+ + + + T
Sbjct: 61 EVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEV-T 119
Query: 186 AEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236
E F+ N G F +++ L ++ R+I+ SI +
Sbjct: 120 QELFDKVFNLNTRGQFFVAQQGLKHCRRGG----RIILTSSIAAVMTGIPN 166
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 Length = 244 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 3e-10
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Query: 89 VIITGASSGLGLATAKALAETG------KWHIIMACRDFLKAERAAKSAGMAKENYTIMH 142
++ITGA G+G A A A + ++++ R E+ + +
Sbjct: 5 LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTIT 64
Query: 143 LDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAV 174
D++ + VR+ R G +D LV NA V
Sbjct: 65 ADISDMADVRRLTTHIVERYGH-IDCLVNNAGV 96
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} Length = 266 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 3e-10
Identities = 29/118 (24%), Positives = 41/118 (34%), Gaps = 15/118 (12%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGA+ G+G A AL G + +A R A + DL
Sbjct: 31 ALVTGAAGGIGGAVVTALRAAG-ARVAVADRA---VAGIAADLHLP--------GDLREA 78
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
GR LD++V NA V T + LS+G N F + R
Sbjct: 79 AYADGLPGAVAAGLGR-LDIVVNNAGVISRGRIT-ETTDADWSLSLGVNVEAPFRICR 134
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* Length = 260 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 4e-10
Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 7/115 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+++G + G+G + +A+ G ++ + + A + +HLD+
Sbjct: 10 ALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELA---DAARYVHLDVTQP 65
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 202
+ VD G L VLV NA + E + ++ + N G FL
Sbjct: 66 AQWKAAVDTAVTAFGG-LHVLVNNAGILNIGTIE-DYALTEWQRILDVNLTGVFL 118
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} Length = 283 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 4e-10
Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 3/118 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+ITGA SG+G ATA ALA G + R + E A A + D++
Sbjct: 31 ALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDE 89
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+R V + G LD++V NA + A ++ ++ N G FL
Sbjct: 90 LQMRNAVRDLVLKFGH-LDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLH 146
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} Length = 256 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 5e-10
Identities = 32/151 (21%), Positives = 55/151 (36%), Gaps = 13/151 (8%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
I+TGA++G+G A A A+ G +++ AE A + A + ++
Sbjct: 15 AIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDE 73
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
+ + G+ + VLV NA P + FE + N F LS+L
Sbjct: 74 QHREAVIKAALDQFGK-ITVLVNNAGGGGPKPFD--MPMSDFEWAFKLNLFSLFRLSQLA 130
Query: 208 LDD-LKQSDYPSKRLIIVGSITGNTNTLAGN 237
K ++ + S+ G N
Sbjct: 131 APHMQKAG---GGAILNISSMAG----ENTN 154
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} Length = 262 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 5e-10
Identities = 33/146 (22%), Positives = 48/146 (32%), Gaps = 7/146 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V++TG + G+G A A G + A + + D++
Sbjct: 13 VVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDR 72
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
+DV+ NA V+ P A T T E N G F + L
Sbjct: 73 AQCDALAGRAVEEFGGIDVVCANAGVF-PDAPLATMTPEQLNGIFAVNVNGTFYAVQACL 131
Query: 209 DDLKQSDYPSKRLI----IVGSITGN 230
D L S R++ I G ITG
Sbjct: 132 DALIASGSG--RVVLTSSITGPITGY 155
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 8e-10
Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 19/153 (12%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIM--HLDLA 146
++TGA+ G+G A A+AL G + + + + + E + D+A
Sbjct: 10 ALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVA 68
Query: 147 SLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+R GR LD+LV NA V + +E ++ N + +
Sbjct: 69 DQQQLRDTFRKVVDHFGR-LDILVNNAGV---------NNEKNWEKTLQINLVSVISGTY 118
Query: 206 LLLDDLKQSDYPSKRLII-VGSITGNTNTLAGN 237
L LD + + + +II + S+ G L
Sbjct: 119 LGLDYMSKQNGGEGGIIINMSSLAG----LMPV 147
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} Length = 263 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 1e-09
Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 7/118 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
I+TG S G+G A A+AL + G + +A D A + + +D+
Sbjct: 15 AIVTGGSKGIGAAIARALDKAG-ATVAIADLD---VMAAQAVVAGLENGGFAVEVDVTKR 70
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
SV + G D+L NA V T E ++ + N G FL ++
Sbjct: 71 ASVDAAMQKAIDALGG-FDLLCANAGVS-TMRPAVDITDEEWDFNFDVNARGVFLANQ 126
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} Length = 294 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 1e-09
Identities = 34/157 (21%), Positives = 59/157 (37%), Gaps = 21/157 (13%)
Query: 79 QGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAER--AAKSAGMAKE 136
+ +K ++TG SG+G A A A A G + + +L AE A + + +E
Sbjct: 48 KDRK------ALVTGGDSGIGRAAAIAYAREG-ADVAIN---YLPAEEEDAQQVKALIEE 97
Query: 137 ---NYTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELS 192
++ DL+ R V G LD+L A + T+E F+ +
Sbjct: 98 CGRKAVLLPGDLSDESFARSLVHKAREALGG-LDILALVAGKQTAIPEIKDLTSEQFQQT 156
Query: 193 VGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
N F +++ + L + +I SI
Sbjct: 157 FAVNVFALFWITQEAIPLLPKGA----SIITTSSIQA 189
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A Length = 239 | Back alignment and structure |
|---|
Score = 56.3 bits (137), Expect = 2e-09
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 15/118 (12%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
++TG S G+G A A+AL G + + +A R+ +A ++ + + DL D
Sbjct: 6 LVTGGSRGIGRAIAEALVARG-YRVAIASRNPEEAAQSLGAVPLP--------TDL-EKD 55
Query: 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPT--FTAEGFELSVGTNHLGHFLLSR 205
+ V + L VLV AAV ++P + E + + + FLL++
Sbjct: 56 DPKGLVKRALEALGGLHVLVHAAAV---NVRKPALELSYEEWRRVLYLHLDVAFLLAQ 110
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* Length = 254 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 2e-09
Identities = 25/149 (16%), Positives = 45/149 (30%), Gaps = 15/149 (10%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
I+T G+ +A L+E G + F + + A L S
Sbjct: 5 IVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDELEAFAETY------PQLKPMSEQ 57
Query: 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLD 209
+ ++ + +DVLV N + E + +V + F L +
Sbjct: 58 EPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVAS 117
Query: 210 D-LKQSDYPSKRLIIVGSITGNTNTLAGN 237
K+ S +I + S T
Sbjct: 118 QMKKRK---SGHIIFITSATP----FGPW 139
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A Length = 264 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 2e-09
Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 15/118 (12%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
VI+TGAS G+G A A+ + G +I + + D+ +
Sbjct: 11 VIVTGASMGIGRAIAERFVDEG-SKVIDLSIH----DPGEAKY-------DHIECDVTNP 58
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
D V+ +D F+ G + VLV NA + E + + + + N G++ S+
Sbjct: 59 DQVKASIDHIFKEYGS-ISVLVNNAGIESYGKIE-SMSMGEWRRIIDVNLFGYYYASK 114
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* Length = 277 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 3e-09
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGA+SG+GL A+ L + G + + R K A D+ S+
Sbjct: 25 ALVTGATSGIGLEIARRLGKEG-LRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSV 83
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNA 172
+ V P+DVLV NA
Sbjct: 84 PEIEALVAAVVERYGPVDVLVNNA 107
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 Length = 242 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 3e-09
Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 17/122 (13%)
Query: 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 147
S ++TG +SGLG A A AL G + +++ D L+ E + D+
Sbjct: 4 SALVTGGASGLGRAAALALKARG-YRVVVL--D-LRREGEDLIY---------VEGDVTR 50
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPT---AKEPTFTAEGFELSVGTNHLGHFLLS 204
+ VR+ V + PL +V A V L KE E F + N LG F +
Sbjct: 51 EEDVRRAVARAQEEA-PLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVL 109
Query: 205 RL 206
RL
Sbjct: 110 RL 111
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Length = 269 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 3e-09
Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 1/98 (1%)
Query: 76 SSPQGKKTLRKGSV-IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA 134
+ QG +++ V +TG GLG A ++ L + G + A
Sbjct: 14 AQTQGPGSMQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDA 73
Query: 135 KENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNA 172
++ +D+A +S + + +DVL+ NA
Sbjct: 74 GRDFKAYAVDVADFESCERCAEKVLADFGKVDVLINNA 111
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} Length = 260 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 3e-09
Identities = 34/158 (21%), Positives = 54/158 (34%), Gaps = 14/158 (8%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
++TGAS G+G A L + G + + R A+ A + D +
Sbjct: 9 VVTGASRGIGRGIALQLCKAG-ATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQES 67
Query: 150 SVRQFVDTFRR--SGRPLDVLVCNAAVYLPTAKEPTF------TAEGFELSVGTNHLGHF 201
VR + R GR LDVLV NA + T A ++ GH+
Sbjct: 68 EVRSLFEQVDREQQGR-LDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHY 126
Query: 202 LLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239
S + + ++++ S NVP
Sbjct: 127 FCSVYGARLMVPA--GQGLIVVISSPGSLQY--MFNVP 160
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} Length = 249 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 4e-09
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+ITGASSG+G A A+ L + G II E+ K+NYTI +LA+
Sbjct: 17 SLITGASSGIGSAIARLLHKLGSKVIISGSN----EEKLKSLGNALKDNYTIEVCNLANK 72
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNA 172
+ + LD+LVCNA
Sbjct: 73 EECSNLISKT---SN-LDILVCNA 92
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} Length = 280 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 5e-09
Identities = 36/155 (23%), Positives = 56/155 (36%), Gaps = 12/155 (7%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
I+TG G+GL A+ALA +G I D + DLA L
Sbjct: 32 AIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADL 91
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEP----TFTAEGFELSVGTNHLGHFLLS 204
S + VD +D LV NA + + E F+ VG N G +
Sbjct: 92 SSHQATVDAVVAEFGRIDCLVNNAGI---ASIVRDDFLDLKPENFDTIVGVNLRGTVFFT 148
Query: 205 RLLLDD-LKQSDYPSKRLIIVGSITGNTNTLAGNV 238
+ +L L S+ +I + S++ + +
Sbjct: 149 QAVLKAMLASDARASRSIINITSVSA----VMTSP 179
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} Length = 272 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 6e-09
Identities = 28/142 (19%), Positives = 48/142 (33%), Gaps = 10/142 (7%)
Query: 70 SPAVDVSSP--QGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA 127
S VD+ + + V++TG S G+G A + A G + + A+
Sbjct: 8 SSGVDLGTENLYFQSMSDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAV 67
Query: 128 AKSA----GMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPT 183
+ G A + D+ + + R LD LV NA + +
Sbjct: 68 VAAITESGGEA----VAIPGDVGNAADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDE 123
Query: 184 FTAEGFELSVGTNHLGHFLLSR 205
+ E E + N G L +
Sbjct: 124 MSVERIERMLRVNVTGSILCAA 145
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} Length = 264 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 8e-09
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 9/92 (9%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA---KSAGMAKENYTIMH--- 142
++TGA SG+G A + LA G + D A+ G + H
Sbjct: 10 ALVTGAGSGIGRAVSVRLAGEG-ATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAF 68
Query: 143 -LDLASLDSVRQFVDTFR-RSGRPLDVLVCNA 172
D++ + R ++ + RP V+V A
Sbjct: 69 QADVSEARAARCLLEQVQACFSRPPSVVVSCA 100
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* Length = 283 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 8e-09
Identities = 39/185 (21%), Positives = 68/185 (36%), Gaps = 19/185 (10%)
Query: 60 VVRAQTMATASPAVDVSSPQGKKTLR-KGSV-IITGASSGLGLATAKALAETGKWHIIMA 117
+ S + P G ++ +G V ++TGA G+G A L G I+
Sbjct: 1 MPAVTQPRGESKYDAIPGPLGPQSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNY 60
Query: 118 CRDFLKAE---RAAKSAG---MAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCN 171
AE A K G + ++ ++ + + + + LD++ N
Sbjct: 61 ANSTESAEEVVAAIKKNGSDAAC------VKANVGVVEDIVRMFEEAVKIFGKLDIVCSN 114
Query: 172 AAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNT 231
+ V + T E F+ N G F ++R L+ RLI++GSITG
Sbjct: 115 SGVVSFGHVK-DVTPEEFDRVFTINTRGQFFVAREAYKHLEIGG----RLILMGSITGQA 169
Query: 232 NTLAG 236
+
Sbjct: 170 KAVPK 174
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 Length = 256 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 9e-09
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGA G+G A A L + G + +A + A+ A A + + +D++
Sbjct: 5 ALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDR 63
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
D V V+ R++ DV+V NA V P+ + T E + N G +
Sbjct: 64 DQVFAAVEQARKTLGGFDVIVNNAGVA-PSTPIESITPEIVDKVYNINVKGVIWGIQ 119
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} Length = 247 | Back alignment and structure |
|---|
Score = 54.4 bits (132), Expect = 1e-08
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGAS G+G A ALA G ++ AE+ S + L+++ +
Sbjct: 8 ALVTGASRGIGFEVAHALASKG-ATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDI 66
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNA 172
+S++ F + +D+LV NA
Sbjct: 67 ESIQNFFAEIKAENLAIDILVNNA 90
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 Length = 263 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 1e-08
Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 4/84 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+++TGA+SG+G A A G ++ R+ A + + D++
Sbjct: 9 ILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALE---AEAIAVVADVSDP 64
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNA 172
+V L + A
Sbjct: 65 KAVEAVFAEALEEFGRLHGVAHFA 88
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} Length = 250 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 1e-08
Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 11/86 (12%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V +TGA G+G ATA A E G + + F + + + +D+A
Sbjct: 10 VWVTGAGKGIGYATALAFVEAG-AKVTGFDQAFTQEQYPFAT----------EVMDVADA 58
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAV 174
V Q LD LV A +
Sbjct: 59 AQVAQVCQRLLAETERLDALVNAAGI 84
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A Length = 454 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 2e-08
Identities = 37/188 (19%), Positives = 68/188 (36%), Gaps = 21/188 (11%)
Query: 55 SQRNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHI 114
S ++ V Q + + K L ++TGA+ G+G A+ A G +
Sbjct: 183 SAKSAYVDGQVFRVGAADSTPPADW-DKPLDGKVAVVTGAARGIGATIAEVFARDGATVV 241
Query: 115 IMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR-RSGRPLDVLVCNAA 173
+ K T + LD+ + D+V + G +D+LV NA
Sbjct: 242 AIDVD----GAAEDLKRVADKVGGTALTLDVTADDAVDKITAHVTEHHGGKVDILVNNAG 297
Query: 174 VYLPTAKEPTF---TAEGFELSVGTNHLGHFLLSRLLLD-DLKQSDYPSKRLIIVGSITG 229
+ T ++ + ++ + N L L+ L+ R+I + S+ G
Sbjct: 298 I---T-RDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIG---EGGRVIGLSSMAG 350
Query: 230 NTNTLAGN 237
+AGN
Sbjct: 351 ----IAGN 354
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* Length = 287 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 2e-08
Identities = 18/106 (16%), Positives = 38/106 (35%), Gaps = 9/106 (8%)
Query: 68 TASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA 127
TA+ V + +++ ++ + +G+ +A LA G +++ R KA+ A
Sbjct: 101 TAAAGVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAA 159
Query: 128 AKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAA 173
A S + + + A S + V + A
Sbjct: 160 ADSVN-KRFKVNVTAAETADDASRAEAVKG-------AHFVFTAGA 197
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 Length = 265 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 2e-08
Identities = 35/161 (21%), Positives = 62/161 (38%), Gaps = 19/161 (11%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+I+TG + G+GLA +A+A G ++ E K D+++
Sbjct: 17 IIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNT 76
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEP--TFTAEGFELSVGTNHLGHFLLS- 204
D V + + G + L+ NA V + +P T E F N G F
Sbjct: 77 DIVTKTIQQIDADLGP-ISGLIANAGV---SVVKPATELTHEDFAFVYDVNVFGVFNTCR 132
Query: 205 ---RLLLDDLKQSDYPSKRLIIVGSITG---NTNTLAGNVP 239
+L L KQ +++ S++ N ++L G++
Sbjct: 133 AVAKLWLQ--KQQ---KGSIVVTSSMSSQIINQSSLNGSLT 168
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 2e-08
Identities = 26/159 (16%), Positives = 53/159 (33%), Gaps = 16/159 (10%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE---NYTIMHLDL 145
+++ GA +G A A A+ G ++++ AE AA + ++ + + DL
Sbjct: 11 IVVAGAGRDIGRACAIRFAQEG-ANVVLTYNG--AAEGAATAVAEIEKLGRSALAIKADL 67
Query: 146 ASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 204
+ V + + G + LV A + + + N FL +
Sbjct: 68 TNAAEVEAAISAAADKFGE-IHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTA 126
Query: 205 RLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243
+ L + + ++ S G G P
Sbjct: 127 KTALPKMAKGG----AIVTFSSQAG----RDGGGPGALA 157
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} Length = 260 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 2e-08
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 12/85 (14%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V+ITGAS G+G +A + + ++ + A + + D++
Sbjct: 31 VVITGASQGIGAGLVRAYRDRN-YRVVAT---------SRSIKPSADPDIHTVAGDISKP 80
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNA 172
++ + V R GR +D LV NA
Sbjct: 81 ETADRIVREGIERFGR-IDSLVNNA 104
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A Length = 270 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 3e-08
Identities = 33/167 (19%), Positives = 60/167 (35%), Gaps = 6/167 (3%)
Query: 71 PAVDVSSPQGKKTLRKGSV-IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK 129
P V+ +S G V ++TG+ G+G A A L G ++ AE+
Sbjct: 2 PHVENASETYIPGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVS 61
Query: 130 SAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGF 189
+ + D+ + + + D LD+ V N+ V + T E F
Sbjct: 62 EIKALGSDAIAIKADIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLK-DVTEEEF 120
Query: 190 ELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236
+ N G F ++R L + R+++ S T ++
Sbjct: 121 DRVFSLNTRGQFFVAREAYRHLTE----GGRIVLTSSNTSKDFSVPK 163
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB: 3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E Length = 248 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 3e-08
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGAS G+G A A+ LAE G +I A+ + G +N M L++ +
Sbjct: 12 ALVTGASRGIGKAIAELLAERG-AKVIGTATSESGAQAISDYLG---DNGKGMALNVTNP 67
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNA 172
+S+ + +D+LV NA
Sbjct: 68 ESIEAVLKAITDEFGGVDILVNNA 91
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} Length = 247 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 3e-08
Identities = 23/84 (27%), Positives = 36/84 (42%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
I+TG+S GLG A A L G ++ + A+ A N + D+ +
Sbjct: 8 AIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNP 67
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNA 172
+ V V T + +D+LV NA
Sbjct: 68 EDVENMVKTAMDAFGRIDILVNNA 91
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A Length = 266 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 3e-08
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGA+ G+G A A+ G + + K + A G ++ + +L+
Sbjct: 30 ALVTGATGGIGEAIARCFHAQG-AIVGLHGTREDKLKEIAADLG---KDVFVFSANLSDR 85
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNA 172
S++Q + R +D+LV NA
Sbjct: 86 KSIKQLAEVAEREMEGIDILVNNA 109
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* Length = 261 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 3e-08
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 3/118 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V+ITG+S+GLG + A A ++ +A + + D+
Sbjct: 10 VVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVE 69
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
V V + G+ LDV++ NA + P + + + + TN G FL SR
Sbjct: 70 SDVINLVQSAIKEFGK-LDVMINNAGLENPVSSH-EMSLSDWNKVIDTNLTGAFLGSR 125
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} Length = 264 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 3e-08
Identities = 16/84 (19%), Positives = 31/84 (36%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+IT + GLG + L G + D E ++ +E + D+
Sbjct: 10 ALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKK 69
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNA 172
+ + + V+ +D L+ NA
Sbjct: 70 EDLHKIVEEAMSHFGKIDFLINNA 93
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} Length = 267 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 4e-08
Identities = 37/140 (26%), Positives = 53/140 (37%), Gaps = 5/140 (3%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
I+TGAS G+G A A LA G +I AE A A D++
Sbjct: 31 IVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPA 90
Query: 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLD 209
+VR+ T + +DVLV NA + T T F+ + N G F R
Sbjct: 91 AVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAET-GDAVFDRVIAVNLKGTFNTLREAAQ 149
Query: 210 DLKQSDYPSKRLIIVGSITG 229
L+ R+I + +
Sbjct: 150 RLRVGG----RIINMSTSQV 165
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} Length = 255 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 4e-08
Identities = 38/153 (24%), Positives = 59/153 (38%), Gaps = 25/153 (16%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAE---RAAKSAG---MAKENYTIMHL 143
++TGAS G+G A AK LA G I +AE +S G + +
Sbjct: 11 LVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFS------IGA 64
Query: 144 DLASLDSVRQFVDTFRR-------SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTN 196
+L SL V + S + D+L+ NA + E T T + F+ V N
Sbjct: 65 NLESLHGVEALYSSLDNELQNRTGSTK-FDILINNAGIGPGAFIEET-TEQFFDRMVSVN 122
Query: 197 HLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
F + + L L+ + R+I + S
Sbjct: 123 AKAPFFIIQQALSRLRDNS----RIINISSAAT 151
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} Length = 287 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 4e-08
Identities = 37/178 (20%), Positives = 59/178 (33%), Gaps = 26/178 (14%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMA--CRDFLKAERAAKSAGMAKE---------- 136
V++TG + G G + A LAE G II+ C D E ++ +E
Sbjct: 13 VLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGR 71
Query: 137 NYTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGT 195
+D+ +V + + G+ LDV+V NA + + F +
Sbjct: 72 KAYTAEVDVRDRAAVSRELANAVAEFGK-LDVVVANAGICPLG---AHLPVQAFADAFDV 127
Query: 196 NHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGG 253
+ +G L L +I GS+ G L P G G
Sbjct: 128 DFVGVINTVHAALPYLTSGA----SIITTGSVAG----LIAAAQPPGAGGPQGPGGAG 177
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} Length = 299 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 4e-08
Identities = 28/130 (21%), Positives = 50/130 (38%), Gaps = 15/130 (11%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMA--CRDFLKAERAAKSAGMAKE---------- 136
ITGA+ G G + A LA G II C+ + + E
Sbjct: 31 AFITGAARGQGRSHAITLAREGA-DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGR 89
Query: 137 NYTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGT 195
+D+ D+++ VD + GR LD+++ NAA+ + + + +
Sbjct: 90 RIIASQVDVRDFDAMQAAVDDGVTQLGR-LDIVLANAALASEGTRLNRMDPKTWRDMIDV 148
Query: 196 NHLGHFLLSR 205
N G ++ +R
Sbjct: 149 NLNGAWITAR 158
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* Length = 248 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 5e-08
Identities = 21/84 (25%), Positives = 37/84 (44%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TG++ G+G A A+ LA G II A + A + ++L S
Sbjct: 10 SLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSE 69
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNA 172
+S+ + + +D+LV NA
Sbjct: 70 ESINKAFEEIYNLVDGIDILVNNA 93
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} Length = 256 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 5e-08
Identities = 16/84 (19%), Positives = 33/84 (39%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+TG G+G + + L + G + + + + + ++ ++
Sbjct: 16 AYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDW 75
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNA 172
DS +Q D + +DVLV NA
Sbjct: 76 DSTKQAFDKVKAEVGEIDVLVNNA 99
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* Length = 247 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 5e-08
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGA+ G+G A A LA G +I++ + A+ AA S G + + D++
Sbjct: 9 ALVTGAAQGIGKAIAARLAADG-ATVIVSDINAEGAKAAAASIG---KKARAIAADISDP 64
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNA 172
SV+ + +D+LV NA
Sbjct: 65 GSVKALFAEIQALTGGIDILVNNA 88
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} Length = 270 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 6e-08
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIM 141
KTL K I+TGAS G+G A A LA G +I AE + A
Sbjct: 24 KTLDKQVAIVTGASRGIGRAIALELARRG-AMVIGTATTEAGAEGIGAAFKQAGLEGRGA 82
Query: 142 HLDLASLDSVRQFVDTFRRSGRPLDVLVCNA 172
L++ +V V++ + L+VLV NA
Sbjct: 83 VLNVNDATAVDALVESTLKEFGALNVLVNNA 113
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} Length = 262 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 6e-08
Identities = 20/121 (16%), Positives = 45/121 (37%), Gaps = 7/121 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKEN---YTIMHLDL 145
++I G LG TAK A ++++ ++ A K ++ + DL
Sbjct: 14 IVIAGGIKNLGALTAKTFALES-VNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDL 72
Query: 146 ASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 204
++ + V + D + G+ +D+ + L T + F+ N+ +
Sbjct: 73 SNEEEVAKLFDFAEKEFGK-VDIAINTVGKVLKKPIVET-SEAEFDAMDTINNKVAYFFI 130
Query: 205 R 205
+
Sbjct: 131 K 131
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} Length = 271 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 7e-08
Identities = 34/153 (22%), Positives = 56/153 (36%), Gaps = 17/153 (11%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAE---RAAKSAG---MAKENYTIMHL 143
+TG S G+G A AK LA G + +A+ + AG +A +
Sbjct: 35 FVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVA------IRA 88
Query: 144 DLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLL 203
D +++ Q + + LD+LV +A ++ E T F+ + N F+
Sbjct: 89 DNRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPLE-ETTVADFDEVMAVNFRAPFVA 147
Query: 204 SRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236
R L R+I +GS G
Sbjct: 148 IRSASRHLGD----GGRIITIGSNLAELVPWPG 176
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* Length = 249 | Back alignment and structure |
|---|
Score = 51.7 bits (125), Expect = 8e-08
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+ITG ++G+G A A+ A G I +A D + A A + + D++
Sbjct: 10 AVITGGANGIGRAIAERFAVEGA-DIAIA--DLVPAPEAEAAIRNLGRRVLTVKCDVSQP 66
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVY 175
V F + D+LV NA +Y
Sbjct: 67 GDVEAFGKQVISTFGRCDILVNNAGIY 93
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} PDB: 3gdf_A Length = 267 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 8e-08
Identities = 33/162 (20%), Positives = 64/162 (39%), Gaps = 24/162 (14%)
Query: 89 VIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENY----TIMH 142
V++TGAS G+G+ A+ AE G + + +A+ A ++ ++ Y
Sbjct: 23 VVVTGASGPKGMGIEAARGCAEMGA-AVAITYAS--RAQGAEENVKELEKTYGIKAKAYK 79
Query: 143 LDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEP--TFTAEGFELSVGTNHLG 199
+ S +S + V G+ +D + NA TA + E + V + G
Sbjct: 80 CQVDSYESCEKLVKDVVADFGQ-IDAFIANAGA---TADSGILDGSVEAWNHVVQVDLNG 135
Query: 200 HFLLSRLLLDD-LKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240
F ++ + ++ + L+I S++G N P
Sbjct: 136 TFHCAKAVGHHFKERG---TGSLVITASMSG----HIANFPQ 170
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* Length = 291 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 9e-08
Identities = 45/156 (28%), Positives = 66/156 (42%), Gaps = 20/156 (12%)
Query: 79 QGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENY 138
+GK V+ITG SG+G A + A A+ G +I +A +L E A E
Sbjct: 46 KGKN------VLITGGDSGIGRAVSIAFAKEGA-NIAIA---YLDEEGDANETKQYVEKE 95
Query: 139 ----TIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSV 193
++ DL+ + V T R+ G L++LV N A P TAE E +
Sbjct: 96 GVKCVLLPGDLSDEQHCKDIVQETVRQLGS-LNILVNNVAQQYPQQGLEYITAEQLEKTF 154
Query: 194 GTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
N +F +++ L LKQ D +I SI
Sbjct: 155 RINIFSYFHVTKAALSHLKQGD----VIINTASIVA 186
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 Length = 249 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 9e-08
Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 19/140 (13%)
Query: 90 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 149
++ AS G+G A A L++ G + + R+ E +S D
Sbjct: 23 LVLAASRGIGRAVADVLSQEGA-EVTICARN---EELLKRSGH-----------RYVVCD 67
Query: 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLD 209
+R+ +D + +D+LV NA + T E F+ ++ + L + R L
Sbjct: 68 -LRKDLDLLFEKVKEVDILVLNAGGPKAGFFD-ELTNEDFKEAIDSLFLNMIKIVRNYLP 125
Query: 210 DLKQSDYPSKRLIIVGSITG 229
+K+ + R++ + S +
Sbjct: 126 AMKEKGWG--RIVAITSFSV 143
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 Length = 285 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 9e-08
Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGA G+G AK LA++ H+I R + + D++
Sbjct: 47 ALVTGAGRGIGREIAKMLAKSV-SHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKK 105
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNA 172
+ + + ++ + +D+LV NA
Sbjct: 106 EEISEVINKILTEHKNVDILVNNA 129
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} Length = 246 | Back alignment and structure |
|---|
Score = 50.9 bits (123), Expect = 1e-07
Identities = 22/84 (26%), Positives = 36/84 (42%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGAS G+G A A LA+ G ++ + KA + + D+A+
Sbjct: 7 ALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANA 66
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNA 172
+ V V +D+LV NA
Sbjct: 67 EDVTNMVKQTVDVFGQVDILVNNA 90
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* Length = 269 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 1e-07
Identities = 22/84 (26%), Positives = 31/84 (36%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGAS G+G A A LA G + A+ + A + D++
Sbjct: 31 ALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQE 90
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNA 172
V LDVLV NA
Sbjct: 91 SEVEALFAAVIERWGRLDVLVNNA 114
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A Length = 247 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 2e-07
Identities = 38/170 (22%), Positives = 65/170 (38%), Gaps = 29/170 (17%)
Query: 73 VDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG 132
++ K SV++TG + G+GLA A+ LA G + + G
Sbjct: 2 TATATEGAKPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRG----SGAPKGLFG 57
Query: 133 MAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAV----YLPTAKEPTFTAEG 188
+ +D+ D+V + P++VLV NA + +L E E
Sbjct: 58 VE--------VDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTE-----EK 104
Query: 189 FELSVGTNHLGHFLLSRLLLDD-LKQSDYPSKRLIIVGSITGNTNTLAGN 237
FE + N G F +++ + R+I +GS++G L G
Sbjct: 105 FEKVINANLTGAFRVAQRASRSMQRNK---FGRMIFIGSVSG----LWGI 147
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 Length = 328 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 2e-07
Identities = 30/221 (13%), Positives = 61/221 (27%), Gaps = 43/221 (19%)
Query: 45 SSALRCKREFSQRNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAK 104
SS L + + + +++P ++TGA+ LG + A+
Sbjct: 11 SSGLVPRGSHMGSSHHHHHHSSGLVPRGSHMTAPTVP------VALVTGAAKRLGRSIAE 64
Query: 105 ALAETGKWHIIMACR------DFLKAERAAKSAGMA-------------KENYTIMHLDL 145
L G + + + + L A A+ A + +
Sbjct: 65 GLHAEG-YAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPV 123
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTA----KEPTFTAEGFELSV-------- 193
+ V DVLV NA+ + PT E +
Sbjct: 124 TLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADL 183
Query: 194 -GTNHLGHFLLSRLLLDDLKQSDYPSK----RLIIVGSITG 229
G+N + + L + + + + +I +
Sbjct: 184 FGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMT 224
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} Length = 253 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 2e-07
Identities = 41/177 (23%), Positives = 67/177 (37%), Gaps = 29/177 (16%)
Query: 66 MATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE 125
M ++ SS ++ SV++TG + G+GLA A+A A+ G I E
Sbjct: 1 MGSSHHHHHHSSGLVPRSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSG----E 56
Query: 126 RAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAV----YLPTAKE 181
+ D+ + V Q + P++VL+ NA V L E
Sbjct: 57 PPEGFLAVK--------CDITDTEQVEQAYKEIEETHGPVEVLIANAGVTKDQLLMRMSE 108
Query: 182 PTFTAEGFELSVGTNHLGHFLLSRLLLDD-LKQSDYPSKRLIIVGSITGNTNTLAGN 237
E F V TN G F + + L+ R++++ S+ G L G+
Sbjct: 109 -----EDFTSVVETNLTGTFRVVKRANRAMLRAK---KGRVVLISSVVG----LLGS 153
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} Length = 258 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 2e-07
Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 6/120 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMA--CRDFLKAERAAKSAGMAKENYTIMHLDLA 146
++TG + G+G ++ LA G + I +A + +A K A + + LD+
Sbjct: 5 AMVTGGAQGIGRGISEKLAADG-FDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVT 63
Query: 147 SLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+ +D + G DVLV NA + T E + N F +
Sbjct: 64 DKANFDSAIDEAAEKLGG-FDVLVNNAGIA-QIKPLLEVTEEDLKQIYSVNVFSVFFGIQ 121
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} PDB: 3sj7_A* Length = 246 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 2e-07
Identities = 24/84 (28%), Positives = 36/84 (42%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGAS G+G + A LAE G + KAE + + + ++A
Sbjct: 7 ALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADA 66
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNA 172
D V+ + LDVLV NA
Sbjct: 67 DEVKAMIKEVVSQFGSLDVLVNNA 90
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} Length = 278 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 2e-07
Identities = 25/113 (22%), Positives = 38/113 (33%), Gaps = 19/113 (16%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMA--CRDFLKAERAAKSAGMAKENYTI------ 140
ITGA+ G G A A LA G II C + T+
Sbjct: 16 AFITGAARGQGRAHAVRLAADGA-DIIAVDLCDQIASVPYPLATPEELAA--TVKLVEDI 72
Query: 141 ------MHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTA 186
D+ +S+ + GR LD++V NA + +A + +
Sbjct: 73 GSRIVARQADVRDRESLSAALQAGLDELGR-LDIVVANAGIAPMSAGDDGWHD 124
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... Length = 288 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 2e-07
Identities = 33/167 (19%), Positives = 60/167 (35%), Gaps = 30/167 (17%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACR------DFLKAERAAKSAGMAKENYTIMH 142
++TGA+ +G A A L +TG + +++ L E + + A +
Sbjct: 26 AVVTGAAKRIGRAIAVKLHQTG-YRVVIHYHNSAEAAVSLADELNKERSNTAV----VCQ 80
Query: 143 LDLASLDSVRQFVD-----TFRRSGRPLDVLVCNAAVYLPT---------AKEPTFTAEG 188
DL + + + + FR GR DVLV NA+ + PT
Sbjct: 81 ADLTNSNVLPASCEEIINSCFRAFGR-CDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQ 139
Query: 189 FELSVGTNHLGHFLLSRLLLDDLKQSDYPSK----RLIIVGSITGNT 231
+GTN + FLL+ K ++ ++ + +
Sbjct: 140 VAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNLCDAMVDQ 186
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} Length = 245 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 3e-07
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS-AGMAKENYTIMHLDLAS 147
+ITGAS G+G A A LAE G I ++ KAE A+ ++ +L
Sbjct: 4 ALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLE 63
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNA 172
++ V LD LV NA
Sbjct: 64 AEAATALVHQAAEVLGGLDTLVNNA 88
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* Length = 258 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 3e-07
Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 3/118 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TG+S G+G A A LAE G +I R A A+ ++ ++
Sbjct: 7 ALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQP 66
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+++ GR LDV V NAA + ++ ++ N ++
Sbjct: 67 AKIKEMFQQIDETFGR-LDVFVNNAASGVLRPVM-ELEETHWDWTMNINAKALLFCAQ 122
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* Length = 276 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 4e-07
Identities = 32/172 (18%), Positives = 57/172 (33%), Gaps = 20/172 (11%)
Query: 77 SPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE 136
+ + + +ITG + +G + A L + G ++ A+R A+
Sbjct: 2 NETSHEASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARA 61
Query: 137 NYTI-MHLDLASLDSVRQFVD-----TFRRSGRPLDVLVCNAAVYLPT----------AK 180
+ DL+ S+ + +FR GR DVLV NA+ Y PT A
Sbjct: 62 GSAVLCKGDLSLSSSLLDCCEDIIDCSFRAFGR-CDVLVNNASAYYPTPLLPGDDTNGAA 120
Query: 181 EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRL--II-VGSITG 229
+ G+N + L R + R ++ +
Sbjct: 121 DAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMT 172
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G Length = 244 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 4e-07
Identities = 23/84 (27%), Positives = 37/84 (44%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V++TGAS G+G A A +L + G ++ R AE +K D++
Sbjct: 4 VVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKE 63
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNA 172
V + T + +DV+V NA
Sbjct: 64 ADVEAMMKTAIDAWGTIDVVVNNA 87
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} Length = 280 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 5e-07
Identities = 38/155 (24%), Positives = 63/155 (40%), Gaps = 18/155 (11%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMA--CRDFLK--------AERAAKSAGMAKE-- 136
ITGA+ G G + A LA G II C E ++A + ++
Sbjct: 18 AFITGAARGQGRSHAVRLAAEGA-DIIACDICAPVSASVTYAPASPEDLDETARLVEDQG 76
Query: 137 -NYTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVG 194
LD+ ++R+ V + GR LDV+V NA V L + T E ++ +G
Sbjct: 77 RKALTRVLDVRDDAALRELVADGMEQFGR-LDVVVANAGV-LSWGRVWELTDEQWDTVIG 134
Query: 195 TNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
N G + R + + ++ +++V S G
Sbjct: 135 VNLTGTWRTLRATVPAMIEAGN-GGSIVVVSSSAG 168
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} PDB: 3uwr_A* Length = 286 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 5e-07
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 19/125 (15%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMA--CRDFLK-----------AERAAKSAGMAK 135
+TGA+ G G + A LA+ G II C+ E A++A + K
Sbjct: 14 AFVTGAARGQGRSHAVRLAQEGA-DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVK 72
Query: 136 EN---YTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFEL 191
+ +D+ D+++ VD + GR LD++V NA + + E +
Sbjct: 73 GHNRRIVTAEVDVRDYDALKAAVDSGVEQLGR-LDIIVANAGIGNGGDTLDKTSEEDWTE 131
Query: 192 SVGTN 196
+ N
Sbjct: 132 MIDIN 136
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* Length = 405 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 6e-07
Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 12/113 (10%)
Query: 73 VDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG 132
+D + +G V++ GAS+G GLA A + + E ++G
Sbjct: 34 IDYVTTEGPIANGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSG 93
Query: 133 MAKENYTI------------MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAA 173
++ D S + + +D ++ +D ++ + A
Sbjct: 94 WYNSAAFHKFAAQKGLYAKSINGDAFSDEIKQLTIDAIKQDLGQVDQVIYSLA 146
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* Length = 291 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 6e-07
Identities = 26/177 (14%), Positives = 51/177 (28%), Gaps = 37/177 (20%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACR------DFLKAERAAKSAGMA-------- 134
++TGA+ LG + A+ L G + + + + L A A+ A
Sbjct: 12 ALVTGAAKRLGRSIAEGLHAEG-YAVCLHYHRSAAEANALSATLNARRPNSAITVQADLS 70
Query: 135 -----KENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTA----KEPTFT 185
+ + + V DVLV NA+ + PT E
Sbjct: 71 NVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHE 130
Query: 186 AEGFELSV---------GTNHLGHFLLSRLLLDDLKQSDYPSK----RLIIVGSITG 229
+ G+N + + L + + + + +I +
Sbjct: 131 PCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMT 187
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 Length = 245 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 8e-07
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 6/84 (7%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V+ITGA+ G+G AT + A+ G + + E A + +D+A
Sbjct: 8 VLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHP------VVMDVADP 61
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNA 172
SV + LD +V A
Sbjct: 62 ASVERGFAEALAHLGRLDGVVHYA 85
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} Length = 277 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 2e-06
Identities = 33/155 (21%), Positives = 53/155 (34%), Gaps = 18/155 (11%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMA--CRDFLK--------AERAAKSAGMAKE-- 136
ITGA+ G G A A +A G II + +++ + +
Sbjct: 14 AFITGAARGQGRAHAVRMAAEGA-DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN 72
Query: 137 -NYTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVG 194
+D D +R+ VD GR LD++V NA V T E F +
Sbjct: 73 RRIVAAVVDTRDFDRLRKVVDDGVAALGR-LDIIVANAGV-AAPQAWDDITPEDFRDVMD 130
Query: 195 TNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
N G + + + +I++ S G
Sbjct: 131 INVTGTWNTVMAGAPRIIEGGR-GGSIILISSAAG 164
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} Length = 266 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 2e-06
Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Query: 65 TMATASPAVDVSSPQGKKTLRKGSVIITGAS-SGLGLATAKALAETGKWHIIMACRDFLK 123
+M + + G L+ V++T A+ +G+G TA+ G ++++ +
Sbjct: 4 SMNLSEAPKE---IDGHGLLKGKVVLVTAAAGTGIGSTTARRALLEG-ADVVISDYHERR 59
Query: 124 AERAAKS-AGMAKENYTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNA 172
A + + D+ S ++V + T ++GR LDVLV NA
Sbjct: 60 LGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKAGR-LDVLVNNA 109
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} Length = 317 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 3e-06
Identities = 47/204 (23%), Positives = 73/204 (35%), Gaps = 36/204 (17%)
Query: 59 GVVRAQTMATASPAVDVSSPQGKKTLRKGS---------VIITGASSGLGLATAKALAET 109
G + AQT S V +G+ ITGA+ G G A LA+
Sbjct: 10 GTLEAQTQGPGSMVDPVRRSTRVSARGQGARMNRLQGKVAFITGAARGQGRTHAVRLAQD 69
Query: 110 GKWHIIMA--CRDFLKAERAAKSAGMAKENYTI------------MHLDLASLDSVRQFV 155
G I+ CR + A S KE T+ D+ L S++ V
Sbjct: 70 GA-DIVAIDLCRQQPNLDYAQGSPEELKE--TVRLVEEQGRRIIARQADVRDLASLQAVV 126
Query: 156 D-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDL-KQ 213
D G +D+LV N + + + T + + + TN +G + R +L + ++
Sbjct: 127 DEALAEFGH-IDILVSNVGI-SNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIER 184
Query: 214 SDYPSKRLIIVGSITGNTNTLAGN 237
+I V S G L G
Sbjct: 185 GQ--GGSVIFVSSTVG----LRGA 202
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} Length = 422 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 2e-05
Identities = 22/143 (15%), Positives = 46/143 (32%), Gaps = 13/143 (9%)
Query: 73 VDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG 132
+ + +G + V++ GASSG GLA+ A + + A +AG
Sbjct: 48 IAATRARGVRNDGPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAG 107
Query: 133 MAKENYTI------------MHLDLASLDSVRQFVDTFR-RSGRPLDVLVCNAAVYLPTA 179
++ D S + Q ++ + G +D++V + A +
Sbjct: 108 WYNSAAFDKHAKAAGLYSKSINGDAFSDAARAQVIELIKTEMGGQVDLVVYSLASPVRKL 167
Query: 180 KEPTFTAEGFELSVGTNHLGHFL 202
+G + +
Sbjct: 168 PGSGEVKRSALKPIGQTYTATAI 190
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} Length = 322 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 8e-05
Identities = 41/171 (23%), Positives = 59/171 (34%), Gaps = 34/171 (19%)
Query: 89 VIITGASSGLGLATAKALAETG---------KWHIIMACRDFLKAERAA---KSAG-MAK 135
VI+TGA G+G A A A A G A+ +AG A
Sbjct: 30 VIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAV 89
Query: 136 ENYTIMHLDLASLDSVRQFVDT-FRRSGRPLDVLVCNAAVYLPTAKEPTF---TAEGFEL 191
+ + ++A D + T G LDVLV NA + ++ + E F+
Sbjct: 90 ADGS----NVADWDQAAGLIQTAVETFGG-LDVLVNNAGI----VRDRMIANTSEEEFDA 140
Query: 192 SVGTNHLGHFLLSR----LLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238
+ + GHF R K R+I S G L G+V
Sbjct: 141 VIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAG----LQGSV 187
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} Length = 281 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 2e-04
Identities = 36/165 (21%), Positives = 64/165 (38%), Gaps = 28/165 (16%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIM--ACRDFLKAERAAKSAGMAKENYTI------ 140
+ITG + G+G + A ALAE G I + C + +A E T+
Sbjct: 13 ALITGGARGMGRSHAVALAEAGA-DIAICDRCENSDVVGYPLATADDLAE--TVALVEKT 69
Query: 141 ------MHLDLASLDSVRQFVDT-FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSV 193
+D+ ++ FV G +D+ + NA + A P + ++ +
Sbjct: 70 GRRCISAKVDVKDRAALESFVAEAEDTLGG-IDIAITNAGI-STIALLPEVESAQWDEVI 127
Query: 194 GTNHLGHFLLSRLLLDDL-KQSDYPSKRLIIVGSITGNTNTLAGN 237
GTN G F + + K++ R++ V S+ G + N
Sbjct: 128 GTNLTGTFNTIAAVAPGMIKRN---YGRIVTVSSMLG----HSAN 165
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* Length = 496 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 4e-04
Identities = 32/147 (21%), Positives = 54/147 (36%), Gaps = 15/147 (10%)
Query: 47 ALRCKREFSQRNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKAL 106
A+R ++R + A S GSV++TG + G+G A+ L
Sbjct: 211 AIRGSGVLARR--LAHAAPAVPGSGKRPPVH---------GSVLVTGGTGGIGGRVARRL 259
Query: 107 AETGKWHIIMACRDFLKAERAAKSAGMAKE---NYTIMHLDLASLDSVRQFVDTFRRSGR 163
AE G H+++ R A AA+ ++ TI D A +++ +
Sbjct: 260 AEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPED-A 318
Query: 164 PLDVLVCNAAVYLPTAKEPTFTAEGFE 190
PL + +A V A T +
Sbjct: 319 PLTAVFHSAGVAHDDAPVADLTLGQLD 345
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} Length = 604 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 4e-04
Identities = 34/166 (20%), Positives = 62/166 (37%), Gaps = 34/166 (20%)
Query: 89 VIITGASSGLGLATAKALAETG--------KWHIIMACRDFLKAERAA---KSAG-MAKE 136
VIITGA GLG + A+ G + + A+ G +A
Sbjct: 11 VIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAVA 70
Query: 137 NYTIMHLDLASLDS-VRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTF---TAEGFELS 192
+Y ++ D V V F G + V++ NA + ++ + T + ++L
Sbjct: 71 DYN----NVLDGDKIVETAVKNF---GT-VHVIINNAGI----LRDASMKKMTEKDYKLV 118
Query: 193 VGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238
+ + G F +++ ++ Y R++ S G L GN
Sbjct: 119 IDVHLNGAFAVTKAAWPYFQKQKYG--RIVNTSSPAG----LYGNF 158
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 5e-04
Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 12/133 (9%)
Query: 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE---NYTIMHL 143
S +ITG G GL A+ L G +++ R ++ A+ + +
Sbjct: 1885 KSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTS 1944
Query: 144 DLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSV-----GTNHL 198
+ +SLD R + + G P+ + N A+ L A T E F+ GT +L
Sbjct: 1945 NASSLDGARSLITEATQLG-PVGGVF-NLAMVLRDAVLENQTPEFFQDVSKPKYSGTANL 2002
Query: 199 GHFLLSRLLLDDL 211
++R +L
Sbjct: 2003 -D-RVTREACPEL 2013
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* Length = 319 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 8e-04
Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 28/163 (17%)
Query: 89 VIITGASSGLGLATAKALAETG--------KWHIIMACRDFLKAERAA---KSAG-MAKE 136
V++TGA GLG A A A AE G + A++ + G A
Sbjct: 12 VLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVA 71
Query: 137 NYTIMHLDLASLDSVRQFVDT-FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGT 195
NY S+++ + V T GR +DV+V NA + L + E +++
Sbjct: 72 NY-------DSVEAGEKLVKTALDTFGR-IDVVVNNAGI-LRDRSFSRISDEDWDIIQRV 122
Query: 196 NHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238
+ G F ++R D +K+ +Y R+I+ S +G + GN
Sbjct: 123 HLRGSFQVTRAAWDHMKKQNYG--RIIMTASASG----IYGNF 159
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 350 | |||
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 100.0 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 100.0 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 100.0 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 100.0 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 100.0 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 100.0 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 100.0 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 100.0 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 100.0 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 100.0 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 100.0 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 100.0 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 100.0 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 100.0 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 100.0 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 100.0 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 100.0 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 100.0 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 100.0 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 100.0 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 100.0 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 100.0 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 100.0 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 100.0 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 100.0 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 100.0 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 100.0 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 100.0 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 100.0 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 100.0 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 100.0 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 100.0 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 100.0 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 100.0 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 100.0 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 100.0 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 100.0 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 100.0 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 100.0 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 100.0 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 100.0 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 100.0 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 100.0 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 100.0 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 100.0 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 100.0 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 100.0 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 100.0 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 100.0 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 100.0 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 100.0 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 100.0 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 100.0 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 100.0 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 100.0 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 100.0 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 100.0 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 100.0 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 100.0 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 100.0 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 100.0 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 100.0 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 100.0 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 100.0 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 100.0 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 100.0 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 100.0 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 100.0 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 100.0 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 100.0 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 100.0 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 100.0 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 100.0 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 100.0 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 100.0 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 100.0 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 100.0 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 100.0 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 100.0 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 100.0 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 100.0 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 100.0 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 100.0 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 100.0 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 100.0 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 100.0 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 100.0 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 100.0 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 100.0 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 100.0 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 100.0 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 100.0 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 100.0 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 100.0 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 100.0 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 100.0 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 100.0 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 100.0 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 100.0 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 100.0 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 100.0 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 100.0 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 100.0 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 100.0 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 100.0 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 100.0 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 100.0 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 100.0 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 100.0 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 100.0 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 100.0 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 100.0 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 100.0 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 100.0 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 100.0 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 100.0 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 100.0 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 100.0 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 100.0 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 100.0 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 100.0 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 100.0 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 100.0 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 100.0 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 100.0 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 100.0 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 100.0 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 100.0 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 100.0 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 100.0 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 100.0 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 100.0 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 100.0 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 100.0 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 100.0 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 100.0 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 100.0 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 100.0 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 100.0 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 100.0 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 100.0 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 100.0 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 100.0 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 100.0 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 100.0 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 100.0 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 100.0 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 100.0 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 100.0 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 100.0 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 100.0 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 100.0 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 100.0 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 100.0 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 100.0 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 100.0 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 100.0 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 100.0 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 100.0 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 100.0 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 100.0 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 100.0 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 100.0 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 100.0 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 100.0 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 100.0 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 100.0 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 100.0 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 100.0 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 100.0 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 100.0 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 100.0 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 100.0 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 100.0 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 100.0 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 100.0 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 100.0 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 100.0 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 100.0 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 100.0 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 100.0 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 100.0 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 100.0 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 100.0 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 100.0 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 100.0 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 100.0 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 100.0 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 100.0 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 100.0 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 100.0 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 100.0 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 100.0 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 100.0 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 100.0 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 100.0 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 100.0 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 100.0 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 100.0 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 100.0 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 100.0 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 100.0 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 100.0 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 100.0 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 100.0 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.98 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 99.98 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 99.97 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.97 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 99.97 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.97 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 99.97 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 99.97 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 99.96 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.96 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.96 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.95 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 99.94 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.94 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 99.94 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 99.92 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 99.9 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 99.9 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 99.88 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.87 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 99.87 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 99.86 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 99.86 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 99.86 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 99.86 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 99.86 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 99.85 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 99.85 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 99.85 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 99.85 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 99.85 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.85 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 99.85 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 99.84 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 99.84 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 99.84 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 99.84 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 99.84 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 99.84 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 99.83 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 99.83 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 99.83 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 99.82 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 99.82 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 99.82 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.82 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 99.82 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 99.82 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 99.82 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 99.82 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 99.82 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 99.82 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 99.82 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 99.82 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 99.81 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 99.81 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 99.81 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 99.8 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 99.8 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.8 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 99.79 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 99.79 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 99.79 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 99.79 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 99.79 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 99.78 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.78 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 99.78 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 99.78 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 99.77 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.77 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.77 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.77 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 99.76 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 99.76 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 99.76 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 99.76 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 99.75 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 99.75 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 99.74 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 99.74 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 99.72 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 99.72 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 99.71 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 99.71 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 99.69 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 99.67 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 99.67 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 99.66 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 99.66 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 99.62 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 99.56 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.56 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.55 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 99.55 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 99.54 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 99.52 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 99.52 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.48 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 99.44 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.39 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.39 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.35 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.35 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 99.33 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 99.22 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 99.06 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 98.93 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.77 | |
| 3gxh_A | 157 | Putative phosphatase (DUF442); YP_001181608.1, str | 98.7 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 98.66 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 98.61 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 98.46 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 98.45 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.45 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 98.44 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 98.44 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 98.43 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 98.36 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 98.31 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 98.26 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 98.2 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 98.14 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 98.14 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 98.13 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 98.11 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 98.11 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.11 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 98.07 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 98.06 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.05 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 98.05 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 98.05 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 97.99 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 97.93 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 97.89 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 97.81 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 97.8 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 97.79 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.76 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.76 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 97.73 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 97.67 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.66 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 97.64 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.64 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 97.64 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.62 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 97.59 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 97.59 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 97.59 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 97.54 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.53 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 97.5 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 97.46 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 97.44 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 97.44 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.43 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 97.42 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 97.39 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 97.37 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 97.36 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 97.33 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 97.31 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 97.25 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 97.25 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 97.23 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 97.22 | |
| 1p9o_A | 313 | Phosphopantothenoylcysteine synthetase; ligase; 2. | 97.19 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.19 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 97.18 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.16 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.15 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 97.15 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 97.1 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 97.1 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 96.96 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 96.93 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 96.84 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 96.82 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 96.79 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 96.79 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 96.78 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 96.72 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 96.69 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 96.68 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 96.67 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 96.66 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 96.63 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 96.62 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 96.55 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 96.55 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 96.54 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 96.54 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 96.48 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 96.47 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 96.47 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 96.43 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 96.42 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 96.41 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 96.4 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 96.38 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 96.37 | |
| 3iup_A | 379 | Putative NADPH:quinone oxidoreductase; YP_296108.1 | 96.33 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 96.31 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 96.31 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 96.29 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 96.26 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 96.25 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 96.25 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 96.24 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 96.24 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 96.21 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 96.14 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 96.13 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 96.12 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 96.12 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 96.11 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 96.06 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 96.01 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 96.0 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 95.92 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 95.92 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 95.7 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 95.67 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 95.63 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 95.62 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 95.62 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 95.55 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 95.54 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 95.53 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 95.52 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 95.5 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 95.39 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 95.36 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 95.36 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 95.35 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 95.31 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 95.29 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 95.28 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 95.13 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 95.11 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 95.01 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 94.93 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 94.88 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 94.77 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 94.7 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 94.69 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 94.68 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 94.67 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 94.59 | |
| 3aoe_E | 419 | Glutamate dehydrogenase; rossmann fold, NADH, oxid | 94.51 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 94.42 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 94.39 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 94.39 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 94.32 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 94.31 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 94.3 | |
| 1tt5_B | 434 | Ubiquitin-activating enzyme E1C isoform 1; cell cy | 94.25 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 94.24 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 94.2 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 94.19 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 94.11 | |
| 1y8q_B | 640 | Anthracycline-, ubiquitin-like 2 activating enzyme | 94.11 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 94.06 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 93.98 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 93.96 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 93.95 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 93.92 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 93.85 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 93.84 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 93.82 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 93.8 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 93.76 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 93.7 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 93.69 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 93.59 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 93.54 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 93.5 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 93.45 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 93.39 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 93.34 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 93.19 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 93.18 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 93.15 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 93.07 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 93.05 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 93.04 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 92.94 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 92.93 |
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-48 Score=345.18 Aligned_cols=229 Identities=17% Similarity=0.167 Sum_probs=199.2
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
++|+||++|||||++|||+++|+.|+++|+ +|++++|+.+.++++.++++..+.++.+++||++|+++++++++++.++
T Consensus 3 ~sL~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~ 81 (254)
T 4fn4_A 3 QSLKNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFET 81 (254)
T ss_dssp GGGTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999999999997 8999999999999999999888889999999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
+|+||+||||||+.....++.+++.|+|++++++|+.|+|+++|+++|+|++++ +|+|||+||+++..+
T Consensus 82 ~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~--~G~IVnisS~~g~~~--------- 150 (254)
T 4fn4_A 82 YSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQG--KGVIVNTASIAGIRG--------- 150 (254)
T ss_dssp HSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTCS---------
T ss_pred cCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEEechhhcCC---------
Confidence 999999999999876557788999999999999999999999999999998876 589999999999864
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.++..+|++||+|+.+|+++++.|+ .++|||||+|+||+|+||+......+..
T Consensus 151 --------------------------~~~~~~Y~asKaal~~ltr~lA~el-a~~gIrVN~V~PG~i~T~~~~~~~~~~~ 203 (254)
T 4fn4_A 151 --------------------------GFAGAPYTVAKHGLIGLTRSIAAHY-GDQGIRAVAVLPGTVKTNIGLGSSKPSE 203 (254)
T ss_dssp --------------------------SSSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSSCTTSCSSCCH
T ss_pred --------------------------CCCChHHHHHHHHHHHHHHHHHHHh-hhhCeEEEEEEeCCCCCcccccccCCcH
Confidence 3678899999999999999999999 7789999999999999998644332211
Q ss_pred HhhhhhhHH-hhhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQK-YITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~~-~~~~~~~s~~~~a~~i~~~ 349 (350)
......... .+..++.+|||+|+.+++|
T Consensus 204 ~~~~~~~~~~~~~~R~g~pediA~~v~fL 232 (254)
T 4fn4_A 204 LGMRTLTKLMSLSSRLAEPEDIANVIVFL 232 (254)
T ss_dssp HHHHHHHHHHTTCCCCBCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCCcCHHHHHHHHHHH
Confidence 111111111 1236678999999988765
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-46 Score=334.35 Aligned_cols=229 Identities=16% Similarity=0.150 Sum_probs=197.3
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
+.+|+||++|||||++|||+++|+.|+++|+ +|++++|+.+.+++..+++...+.++.+++||++|+++++++++++.+
T Consensus 4 ~f~L~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (255)
T 4g81_D 4 LFDLTGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDA 82 (255)
T ss_dssp TTCCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999999999997 999999999999999999988888999999999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
++|+||+||||||+... .++.+++.|+|++++++|+.|+|+++|+++|+|.+++. +|+|||+||+++..+
T Consensus 83 ~~G~iDiLVNNAG~~~~-~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~-~G~IVnisS~~~~~~-------- 152 (255)
T 4g81_D 83 EGIHVDILINNAGIQYR-KPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNS-GGKIINIGSLTSQAA-------- 152 (255)
T ss_dssp TTCCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEECCGGGTSB--------
T ss_pred HCCCCcEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccC-CCEEEEEeehhhcCC--------
Confidence 99999999999999754 78999999999999999999999999999999975431 589999999998864
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~ 320 (350)
.++...|++||+|+.+|+++++.|+ .++|||||+|+||+|+|++......+
T Consensus 153 ---------------------------~~~~~~Y~asKaal~~ltr~lA~el-a~~gIrVN~V~PG~i~T~~~~~~~~~- 203 (255)
T 4g81_D 153 ---------------------------RPTVAPYTAAKGGIKMLTCSMAAEW-AQFNIQTNAIGPGYILTDMNTALIED- 203 (255)
T ss_dssp ---------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCGGGHHHHTC-
T ss_pred ---------------------------CCCchhHHHHHHHHHHHHHHHHHHh-cccCeEEEEEeeCCCCCchhhcccCC-
Confidence 3678899999999999999999999 77899999999999999975321111
Q ss_pred HHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 ~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
...........+..++.+|||+|+.+++|
T Consensus 204 ~~~~~~~~~~~Pl~R~g~pediA~~v~fL 232 (255)
T 4g81_D 204 KQFDSWVKSSTPSQRWGRPEELIGTAIFL 232 (255)
T ss_dssp HHHHHHHHHHSTTCSCBCGGGGHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCcCHHHHHHHHHHH
Confidence 11111112233356788999999988764
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-45 Score=325.96 Aligned_cols=222 Identities=22% Similarity=0.252 Sum_probs=187.5
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.|+||++|||||++|||+++|+.|+++|| +|++++|+.+.+++..+++ +.++.+++||++|+++++++++++.+++
T Consensus 26 rL~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~---g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 101 (273)
T 4fgs_A 26 RLNAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEI---GGGAVGIQADSANLAELDRLYEKVKAEA 101 (273)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---CTTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred hhCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc---CCCeEEEEecCCCHHHHHHHHHHHHHHc
Confidence 48999999999999999999999999997 9999999999888887777 4578899999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
|+||+||||||+.. ..++.+++.|+|++++++|+.|+|+++|+++|+|.+ +|+||++||+++..+
T Consensus 102 G~iDiLVNNAG~~~-~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~----~G~IInisS~~~~~~---------- 166 (273)
T 4fgs_A 102 GRIDVLFVNAGGGS-MLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLAR----GSSVVLTGSTAGSTG---------- 166 (273)
T ss_dssp SCEEEEEECCCCCC-CCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEE----EEEEEEECCGGGGSC----------
T ss_pred CCCCEEEECCCCCC-CCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhh----CCeEEEEeehhhccC----------
Confidence 99999999999864 478999999999999999999999999999999976 369999999998764
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccc--hhh
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH--IPL 320 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~--~~~ 320 (350)
.++...|++||+|+.+|+++++.|+ .++|||||+|+||+|+||++.... .+.
T Consensus 167 -------------------------~~~~~~Y~asKaav~~ltr~lA~El-a~~gIrVN~V~PG~i~T~~~~~~~~~~~~ 220 (273)
T 4fgs_A 167 -------------------------TPAFSVYAASKAALRSFARNWILDL-KDRGIRINTLSPGPTETTGLVELAGKDPV 220 (273)
T ss_dssp -------------------------CTTCHHHHHHHHHHHHHHHHHHHHT-TTSCEEEEEEEECSBCC---------CHH
T ss_pred -------------------------CCCchHHHHHHHHHHHHHHHHHHHh-cccCeEEEEEeeCCCCChhHHHhhccCch
Confidence 3678899999999999999999999 788999999999999999764321 111
Q ss_pred HH--hhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 321 FR--LLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 ~~--~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.. .........+..++.+|||+|+.+++|
T Consensus 221 ~~~~~~~~~~~~~PlgR~g~peeiA~~v~FL 251 (273)
T 4fgs_A 221 QQQGLLNALAAQVPMGRVGRAEEVAAAALFL 251 (273)
T ss_dssp HHHHHHHHHHHHSTTSSCBCHHHHHHHHHHH
T ss_pred hhHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 11 111122233457788999999998765
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-44 Score=317.15 Aligned_cols=221 Identities=17% Similarity=0.200 Sum_probs=182.1
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
.+|+||++|||||++|||+++|+.|+++|| +|++++|+.. ++..+++...+.++.+++||++|+++++++++
T Consensus 5 f~L~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~--~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~----- 76 (247)
T 4hp8_A 5 FSLEGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAP--DETLDIIAKDGGNASALLIDFADPLAAKDSFT----- 76 (247)
T ss_dssp TCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCC--HHHHHHHHHTTCCEEEEECCTTSTTTTTTSST-----
T ss_pred cCCCCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcH--HHHHHHHHHhCCcEEEEEccCCCHHHHHHHHH-----
Confidence 478999999999999999999999999997 8999999754 34555666667889999999999998887664
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
+++||+||||||+... .++.+++.++|++++++|+.|+|+++|+++|+|.+++. +|+|||+||+++..+
T Consensus 77 ~g~iDiLVNNAGi~~~-~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~-~G~IVnisS~~~~~g--------- 145 (247)
T 4hp8_A 77 DAGFDILVNNAGIIRR-ADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGR-SGKVVNIASLLSFQG--------- 145 (247)
T ss_dssp TTCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEECCGGGTSC---------
T ss_pred hCCCCEEEECCCCCCC-CCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC-CcEEEEEechhhCCC---------
Confidence 4799999999999754 78889999999999999999999999999999976532 489999999999864
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.++..+|++||+++.+|+++++.|| .++|||||+|+||+|+||+........
T Consensus 146 --------------------------~~~~~~Y~asKaav~~ltr~lA~El-a~~gIrVNaV~PG~i~T~~~~~~~~~~- 197 (247)
T 4hp8_A 146 --------------------------GIRVPSYTAAKHGVAGLTKLLANEW-AAKGINVNAIAPGYIETNNTEALRADA- 197 (247)
T ss_dssp --------------------------CSSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSGGGHHHHTSH-
T ss_pred --------------------------CCCChHHHHHHHHHHHHHHHHHHHH-hhcCeEEEEEeeCCCCCcchhhcccCH-
Confidence 3678899999999999999999999 778999999999999999763211110
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
........+.+..++.+|||+|+.+++|
T Consensus 198 ~~~~~~~~~~PlgR~g~peeiA~~v~fL 225 (247)
T 4hp8_A 198 ARNKAILERIPAGRWGHSEDIAGAAVFL 225 (247)
T ss_dssp HHHHHHHTTCTTSSCBCTHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCcCHHHHHHHHHHH
Confidence 0011112223346778999999988765
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-44 Score=317.73 Aligned_cols=225 Identities=19% Similarity=0.185 Sum_probs=183.3
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
++|+||++|||||++|||+++|+.|+++|+ +|++++|+.+..+ ..+++...+.++.+++||++|+++++++++++.++
T Consensus 3 ~~L~gKvalVTGas~GIG~aia~~la~~Ga-~Vv~~~r~~~~~~-~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~ 80 (258)
T 4gkb_A 3 LNLQDKVVIVTGGASGIGGAISMRLAEERA-IPVVFARHAPDGA-FLDALAQRQPRATYLPVELQDDAQCRDAVAQTIAT 80 (258)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCCHH-HHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCcccHH-HHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999999997 8999999876543 33445555678999999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
+|+||+||||||+.. ....+.+.|+|++++++|+.|+|+++|+++|+|+++ +|+|||+||+++..+
T Consensus 81 ~G~iDiLVNnAGi~~--~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~---~G~IVnisS~~~~~~--------- 146 (258)
T 4gkb_A 81 FGRLDGLVNNAGVND--GIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKAT---RGAIVNISSKTAVTG--------- 146 (258)
T ss_dssp HSCCCEEEECCCCCC--CCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH---TCEEEEECCTHHHHC---------
T ss_pred hCCCCEEEECCCCCC--CCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc---CCeEEEEeehhhccC---------
Confidence 999999999999853 333478999999999999999999999999999765 389999999998764
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.++...|++||+|+.+|+++++.|+ .++|||||+|+||+|+||++........
T Consensus 147 --------------------------~~~~~~Y~asKaav~~ltr~lA~el-a~~gIrVN~V~PG~i~T~~~~~~~~~~~ 199 (258)
T 4gkb_A 147 --------------------------QGNTSGYCASKGAQLALTREWAVAL-REHGVRVNAVIPAEVMTPLYRNWIATFE 199 (258)
T ss_dssp --------------------------CSSCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCCSCC--------
T ss_pred --------------------------CCCchHHHHHHHHHHHHHHHHHHHh-cccCeEEEEEecCCCCChhHhhhhhccc
Confidence 3678899999999999999999999 7889999999999999998633211100
Q ss_pred --HhhhhhhH-Hhhh-cCccchhhhhhhcccc
Q 018819 322 --RLLFPPFQ-KYIT-KGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 --~~~~~~~~-~~~~-~~~~s~~~~a~~i~~~ 349 (350)
......+. +.+. +++.+|||+|+.+++|
T Consensus 200 ~~~~~~~~~~~~~plg~R~g~peeiA~~v~fL 231 (258)
T 4gkb_A 200 DPEAKLAEIAAKVPLGRRFTTPDEIADTAVFL 231 (258)
T ss_dssp ---CHHHHHHTTCTTTTSCBCHHHHHHHHHHH
T ss_pred ChHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH
Confidence 00001111 1112 4678999999988765
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-43 Score=311.40 Aligned_cols=211 Identities=19% Similarity=0.206 Sum_probs=180.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
+|++|||||++|||+++|+.|+++|+ +|++++|+.+..++..+ .+.++.+++||++|+++++++++++.+++|+|
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~----~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~i 76 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGD-KVCFIDIDEKRSADFAK----ERPNLFYFHGDVADPLTLKKFVEYAMEKLQRI 76 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHT----TCTTEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----hcCCEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 48999999999999999999999996 99999999776665543 34578999999999999999999999999999
Q ss_pred cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcc
Q 018819 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (350)
|+||||||+... .++.+++.|+|++++++|+.|+|+++|++.|+|.+++ |+||++||+++..+
T Consensus 77 DiLVNNAG~~~~-~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~---G~IInisS~~~~~~------------- 139 (247)
T 3ged_A 77 DVLVNNACRGSK-GILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNK---GRIINIASTRAFQS------------- 139 (247)
T ss_dssp CEEEECCCCCCC-CGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT---CEEEEECCGGGTSC-------------
T ss_pred CEEEECCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC---CcEEEEeecccccC-------------
Confidence 999999998654 7889999999999999999999999999999998764 89999999998864
Q ss_pred ccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhhh
Q 018819 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 325 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~ 325 (350)
.++..+|++||+|+.+|+++++.|+ .+ |||||+|+||+|+|++..... .
T Consensus 140 ----------------------~~~~~~Y~asKaal~~ltk~lA~el-a~-~IrVN~I~PG~i~t~~~~~~~-------~ 188 (247)
T 3ged_A 140 ----------------------EPDSEAYASAKGGIVALTHALAMSL-GP-DVLVNCIAPGWINVTEQQEFT-------Q 188 (247)
T ss_dssp ----------------------CTTCHHHHHHHHHHHHHHHHHHHHH-TT-TSEEEEEEECSBCCCC---CC-------H
T ss_pred ----------------------CCCCHHHHHHHHHHHHHHHHHHHHH-CC-CCEEEEEecCcCCCCCcHHHH-------H
Confidence 3678899999999999999999999 56 999999999999998753211 1
Q ss_pred hhhHHhhhcCccchhhhhhhcccc
Q 018819 326 PPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 326 ~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
......+..++.+|||+|+.+++|
T Consensus 189 ~~~~~~Pl~R~g~pediA~~v~fL 212 (247)
T 3ged_A 189 EDCAAIPAGKVGTPKDISNMVLFL 212 (247)
T ss_dssp HHHHTSTTSSCBCHHHHHHHHHHH
T ss_pred HHHhcCCCCCCcCHHHHHHHHHHH
Confidence 112223346678999999888764
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=305.86 Aligned_cols=212 Identities=20% Similarity=0.196 Sum_probs=173.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
++||++|||||++|||+++|+.|+++|+ +|++++|+.+.+++ ..+.++..++||++|+++++++++ ++|
T Consensus 9 f~GK~alVTGas~GIG~aia~~la~~Ga-~Vv~~~~~~~~~~~------~~~~~~~~~~~Dv~~~~~v~~~~~----~~g 77 (242)
T 4b79_A 9 YAGQQVLVTGGSSGIGAAIAMQFAELGA-EVVALGLDADGVHA------PRHPRIRREELDITDSQRLQRLFE----ALP 77 (242)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTSTTS------CCCTTEEEEECCTTCHHHHHHHHH----HCS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHhh------hhcCCeEEEEecCCCHHHHHHHHH----hcC
Confidence 5899999999999999999999999996 99999998765432 234578999999999999988775 478
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCC
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (350)
+||+||||||+. .++.+++.++|++++++|+.|+|+++|+++|+|+++ +|+|||+||+++..+
T Consensus 78 ~iDiLVNNAGi~---~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~---~G~IVnisS~~~~~~----------- 140 (242)
T 4b79_A 78 RLDVLVNNAGIS---RDREEYDLATFERVLRLNLSAAMLASQLARPLLAQR---GGSILNIASMYSTFG----------- 140 (242)
T ss_dssp CCSEEEECCCCC---CGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHH---CEEEEEECCGGGTSC-----------
T ss_pred CCCEEEECCCCC---CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc---CCeEEEEeeccccCC-----------
Confidence 999999999985 356788999999999999999999999999999765 489999999999864
Q ss_pred ccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHh
Q 018819 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL 323 (350)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~ 323 (350)
.++...|++||+++.+|+++++.|| .++|||||+|+||+|+||+........ ..
T Consensus 141 ------------------------~~~~~~Y~asKaav~~ltr~lA~El-a~~gIrVNaV~PG~i~T~m~~~~~~~~-~~ 194 (242)
T 4b79_A 141 ------------------------SADRPAYSASKGAIVQLTRSLACEY-AAERIRVNAIAPGWIDTPLGAGLKADV-EA 194 (242)
T ss_dssp ------------------------CSSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCC-----CCCH-HH
T ss_pred ------------------------CCCCHHHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEEeCCCCChhhhcccCCH-HH
Confidence 3678899999999999999999999 778999999999999999763321110 11
Q ss_pred hhhhhHHhhhcCccchhhhhhhcccc
Q 018819 324 LFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 324 ~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
......+.+..++.+|||+|+.+++|
T Consensus 195 ~~~~~~~~PlgR~g~peeiA~~v~fL 220 (242)
T 4b79_A 195 TRRIMQRTPLARWGEAPEVASAAAFL 220 (242)
T ss_dssp HHHHHHTCTTCSCBCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 11122233456788999999988765
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-42 Score=308.80 Aligned_cols=220 Identities=17% Similarity=0.196 Sum_probs=180.1
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
++|+||++|||||++|||+++|+.|+++|+ +|++++|+.++ ...+..+++||++|+++++++++++.++
T Consensus 7 ~~L~GK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~----------~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 75 (261)
T 4h15_A 7 LNLRGKRALITAGTKGAGAATVSLFLELGA-QVLTTARARPE----------GLPEELFVEADLTTKEGCAIVAEATRQR 75 (261)
T ss_dssp CCCTTCEEEESCCSSHHHHHHHHHHHHTTC-EEEEEESSCCT----------TSCTTTEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeccCcHHHHHHHHHHHHcCC-EEEEEECCchh----------CCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999996 99999997532 1123457899999999999999999999
Q ss_pred CCCCcEEEEccccCCC-CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
+|+||+||||||+... ..++.+++.|+|++++++|+.|+++++|+++|+|++++ +|+||++||+.+..+.
T Consensus 76 ~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~--~G~Iv~isS~~~~~~~------- 146 (261)
T 4h15_A 76 LGGVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARG--SGVVVHVTSIQRVLPL------- 146 (261)
T ss_dssp TSSCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTSCC-------
T ss_pred cCCCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcC--CceEEEEEehhhccCC-------
Confidence 9999999999998543 35788999999999999999999999999999998876 5899999999987542
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~ 320 (350)
..+...|++||+|+.+|+++++.|+ .++|||||+|+||+|+|++........
T Consensus 147 ---------------------------~~~~~~Y~asKaal~~lt~~lA~El-a~~gIrVN~V~PG~i~T~~~~~~~~~~ 198 (261)
T 4h15_A 147 ---------------------------PESTTAYAAAKAALSTYSKAMSKEV-SPKGVRVVRVSPGWIETEASVRLAERL 198 (261)
T ss_dssp ---------------------------TTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCCHHHHHHHHHH
T ss_pred ---------------------------CCccHHHHHHHHHHHHHHHHHHHHh-hhhCeEEEEEeCCCcCCcchhhhhHHH
Confidence 1356889999999999999999999 678999999999999998753211111
Q ss_pred H-----------HhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 321 F-----------RLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 ~-----------~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
. +.........+..++.+|||+|+.+++|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~PlgR~g~peevA~~v~fL 238 (261)
T 4h15_A 199 AKQAGTDLEGGKKIIMDGLGGIPLGRPAKPEEVANLIAFL 238 (261)
T ss_dssp HHHTTCCHHHHHHHHHHHTTCCTTSSCBCHHHHHHHHHHH
T ss_pred HHhhccchhhHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH
Confidence 0 0000111112346678999999988764
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=304.16 Aligned_cols=227 Identities=14% Similarity=0.123 Sum_probs=189.9
Q ss_pred ccccCCCEEEEEcCCC--chHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCC-CceEEEEccCCCHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASS--GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDLASLDSVRQFVDT 157 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~--gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~-~~v~~~~~Dvs~~~~v~~~~~~ 157 (350)
|++|+||++|||||+| |||+++|+.|+++|+ +|++++|+.+..+++.+++++.+ .++.+++||++|++++++++++
T Consensus 1 M~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 79 (256)
T 4fs3_A 1 MLNLENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQ 79 (256)
T ss_dssp CCCCTTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHH
T ss_pred CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHH
Confidence 4678999999999875 999999999999996 99999999888888888776643 5789999999999999999999
Q ss_pred HHHcCCCCcEEEEccccCCC---CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCC
Q 018819 158 FRRSGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTL 234 (350)
Q Consensus 158 ~~~~~g~id~lv~~Ag~~~~---~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~ 234 (350)
+.+++|++|+||||||+... ...+.+.+.++|+..+++|+.+++.+++.+.+.+.+ +|+||++||+++..+
T Consensus 80 ~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~----~G~IVnisS~~~~~~-- 153 (256)
T 4fs3_A 80 IGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPE----GGSIVATTYLGGEFA-- 153 (256)
T ss_dssp HHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTT----CEEEEEEECGGGTSC--
T ss_pred HHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CCEEEEEeccccccC--
Confidence 99999999999999998542 245667889999999999999999999999887654 479999999998864
Q ss_pred CCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccc
Q 018819 235 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (350)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~ 314 (350)
.+++..|++||+|+.+|+++++.|+ .++|||||+|+||+|+|++..
T Consensus 154 ---------------------------------~~~~~~Y~asKaal~~ltr~lA~El-a~~gIrVN~V~PG~i~T~~~~ 199 (256)
T 4fs3_A 154 ---------------------------------VQNYNVMGVAKASLEANVKYLALDL-GPDNIRVNAISAGPIRTLSAK 199 (256)
T ss_dssp ---------------------------------CTTTHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCCCSGGGT
T ss_pred ---------------------------------cccchhhHHHHHHHHHHHHHHHHHh-CccCeEEEEEecCCCCChhhh
Confidence 4678899999999999999999999 778999999999999998763
Q ss_pred ccchhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 315 REHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
... ...........+.+..++.+|||+|+.+++|
T Consensus 200 ~~~-~~~~~~~~~~~~~Pl~R~g~peevA~~v~fL 233 (256)
T 4fs3_A 200 GVG-GFNTILKEIKERAPLKRNVDQVEVGKTAAYL 233 (256)
T ss_dssp TCT-THHHHHHHHHHHSTTSSCCCHHHHHHHHHHH
T ss_pred hcc-CCHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 321 1111111222333456788999999988765
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-40 Score=296.40 Aligned_cols=228 Identities=21% Similarity=0.266 Sum_probs=192.4
Q ss_pred CccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCC-CceEEEEccCCCHHHHHHHHHHH
Q 018819 80 GKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDLASLDSVRQFVDTF 158 (350)
Q Consensus 80 ~~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~-~~v~~~~~Dvs~~~~v~~~~~~~ 158 (350)
.++++++|++|||||++|||+++|++|+++|+ +|++++|+.++.++..+++...+ .++.++.||++|+++++++++++
T Consensus 4 ~m~~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 82 (262)
T 3pk0_A 4 SMFDLQGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRA 82 (262)
T ss_dssp CTTCCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHH
T ss_pred CccCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 35678999999999999999999999999996 99999999998888888887655 68999999999999999999999
Q ss_pred HHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCC
Q 018819 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (350)
Q Consensus 159 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (350)
.++++++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||..+...
T Consensus 83 ~~~~g~id~lvnnAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--~g~iv~isS~~~~~~------ 153 (262)
T 3pk0_A 83 VEEFGGIDVVCANAGVFPD-APLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASG--SGRVVLTSSITGPIT------ 153 (262)
T ss_dssp HHHHSCCSEEEECCCCCCC-CCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHS--SCEEEEECCSBTTTB------
T ss_pred HHHhCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEechhhccC------
Confidence 9999999999999998654 7788999999999999999999999999999998765 479999999987521
Q ss_pred CCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch
Q 018819 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (350)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~ 318 (350)
+.++...|++||++++.+++.++.|+ .++||+||+|+||+|+|++......
T Consensus 154 ----------------------------~~~~~~~Y~asK~a~~~l~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~ 204 (262)
T 3pk0_A 154 ----------------------------GYPGWSHYGATKAAQLGFMRTAAIEL-APHKITVNAIMPGNIMTEGLLENGE 204 (262)
T ss_dssp ----------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCCHHHHTTCH
T ss_pred ----------------------------CCCCChhhHHHHHHHHHHHHHHHHHH-HhhCcEEEEEEeCcCcCccccccCH
Confidence 13677899999999999999999999 6779999999999999987533211
Q ss_pred hhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.. ...........++.+|+|+|+.+++|
T Consensus 205 ~~---~~~~~~~~p~~r~~~p~dva~~v~~L 232 (262)
T 3pk0_A 205 EY---IASMARSIPAGALGTPEDIGHLAAFL 232 (262)
T ss_dssp HH---HHHHHTTSTTSSCBCHHHHHHHHHHH
T ss_pred HH---HHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 11 01111112235678999999988764
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-40 Score=295.14 Aligned_cols=225 Identities=18% Similarity=0.185 Sum_probs=191.2
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+.+++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++...+.++.++.||++|+++++++++++.++
T Consensus 8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 86 (256)
T 3gaf_A 8 FHLNDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQ 86 (256)
T ss_dssp TCCTTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999999996 8999999998888888888777788999999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|+||||||+... .++ +.+.++|++++++|+.|+++++++++|+|.+++ .|+||++||.++..+
T Consensus 87 ~g~id~lv~nAg~~~~-~~~-~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~~--------- 153 (256)
T 3gaf_A 87 FGKITVLVNNAGGGGP-KPF-DMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAG--GGAILNISSMAGENT--------- 153 (256)
T ss_dssp HSCCCEEEECCCCCCC-CCT-TCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCGGGTCC---------
T ss_pred cCCCCEEEECCCCCCC-CCC-CCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEEcCHHHcCC---------
Confidence 9999999999998754 556 889999999999999999999999999998865 579999999988753
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.++...|++||++++.++++++.|+ .+.||+||+|+||+|+|++......+.
T Consensus 154 --------------------------~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~~~~- 205 (256)
T 3gaf_A 154 --------------------------NVRMASYGSSKAAVNHLTRNIAFDV-GPMGIRVNAIAPGAIKTDALATVLTPE- 205 (256)
T ss_dssp --------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCCHHHHHHCCHH-
T ss_pred --------------------------CCCchHHHHHHHHHHHHHHHHHHHH-hhhCcEEEEEEEccccCchhhhccCHH-
Confidence 3677899999999999999999999 677999999999999998653211111
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
............++.+|+|+|+.++++
T Consensus 206 -~~~~~~~~~p~~r~~~~~dva~~~~~L 232 (256)
T 3gaf_A 206 -IERAMLKHTPLGRLGEAQDIANAALFL 232 (256)
T ss_dssp -HHHHHHTTCTTSSCBCHHHHHHHHHHH
T ss_pred -HHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 000111112235678999999988764
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-40 Score=297.72 Aligned_cols=233 Identities=22% Similarity=0.204 Sum_probs=191.3
Q ss_pred CccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHH
Q 018819 80 GKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 80 ~~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
.++.+++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++...+.++.+++||++|+++++++++++.
T Consensus 22 ~m~~~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 100 (283)
T 3v8b_A 22 SMMNQPSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLV 100 (283)
T ss_dssp -----CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred hhcCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 35678899999999999999999999999996 99999999999999999988888899999999999999999999999
Q ss_pred HcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCC
Q 018819 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (350)
+.+|++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||.++....
T Consensus 101 ~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~Iv~isS~~~~~~~------ 172 (283)
T 3v8b_A 101 LKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRG--GGAIVVVSSINGTRTF------ 172 (283)
T ss_dssp HHHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCSBTTTBC------
T ss_pred HHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CceEEEEcChhhccCC------
Confidence 99999999999999865547788999999999999999999999999999998765 5799999999886411
Q ss_pred CCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch-
Q 018819 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI- 318 (350)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~- 318 (350)
+.++...|++||++++.+++.++.|+ .++||+||+|+||+|+|++......
T Consensus 173 ---------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~~~ 224 (283)
T 3v8b_A 173 ---------------------------TTPGATAYTATKAAQVAIVQQLALEL-GKHHIRVNAVCPGAIETNISDNTKLR 224 (283)
T ss_dssp ---------------------------CSTTCHHHHHHHHHHHHHHHHHHHHT-TTTTEEEEEEEECSBSSCTTCCTTBC
T ss_pred ---------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-CccCcEEEEEEeCCCcCCcccccccc
Confidence 13577899999999999999999999 6779999999999999997643211
Q ss_pred hhHHh---hhhhhHHhhh--cCccchhhhhhhcccc
Q 018819 319 PLFRL---LFPPFQKYIT--KGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ~~~~~---~~~~~~~~~~--~~~~s~~~~a~~i~~~ 349 (350)
+.... .......... .++.+|||+|+.+++|
T Consensus 225 ~~~~~~~~~~~~~~~~p~~~~r~~~pedvA~~v~fL 260 (283)
T 3v8b_A 225 HEEETAIPVEWPKGQVPITDGQPGRSEDVAELIRFL 260 (283)
T ss_dssp CHHHHSCCCBCTTCSCGGGTTCCBCHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhcCccccCCCCCHHHHHHHHHHH
Confidence 10000 0000011111 5567899999988764
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-40 Score=294.64 Aligned_cols=227 Identities=17% Similarity=0.162 Sum_probs=190.4
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhcc-C-CCceEEEEccCCCHHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-A-KENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~-~-~~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
+++++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++.. . +.++.++.||++|+++++++++++.
T Consensus 4 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (265)
T 3lf2_A 4 YDLSEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACE 82 (265)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCcCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999999996 899999999888888777754 3 3358999999999999999999999
Q ss_pred HcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCC
Q 018819 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (350)
+.++++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|+|.+++ .|+||++||..+..+
T Consensus 83 ~~~g~id~lvnnAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~~------- 152 (265)
T 3lf2_A 83 RTLGCASILVNNAGQGRV-STFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRA--DAAIVCVNSLLASQP------- 152 (265)
T ss_dssp HHHCSCSEEEECCCCCCC-BCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTST--TEEEEEEEEGGGTSC-------
T ss_pred HHcCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--CeEEEEECCcccCCC-------
Confidence 999999999999998644 7788999999999999999999999999999998765 579999999988753
Q ss_pred CCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch-
Q 018819 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI- 318 (350)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~- 318 (350)
.++...|++||++++.++++++.|+ .++||+||+|+||+|+|++......
T Consensus 153 ----------------------------~~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~~ 203 (265)
T 3lf2_A 153 ----------------------------EPHMVATSAARAGVKNLVRSMAFEF-APKGVRVNGILIGLVESGQWRRRFEA 203 (265)
T ss_dssp ----------------------------CTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHHHHTC
T ss_pred ----------------------------CCCchhhHHHHHHHHHHHHHHHHHh-cccCeEEEEEEeCcCcCchhhhhhhh
Confidence 3678899999999999999999999 6779999999999999987532111
Q ss_pred ------hhHHhhhhhhHH---hhhcCccchhhhhhhcccc
Q 018819 319 ------PLFRLLFPPFQK---YITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ------~~~~~~~~~~~~---~~~~~~~s~~~~a~~i~~~ 349 (350)
....+ ...... ....++.+|+|+|+.+++|
T Consensus 204 ~~~~~~~~~~~-~~~~~~~~~~p~~r~~~pedvA~~v~fL 242 (265)
T 3lf2_A 204 REERELDWAQW-TAQLARNKQIPLGRLGKPIEAARAILFL 242 (265)
T ss_dssp ------CHHHH-HHHHHHHTTCTTCSCBCHHHHHHHHHHH
T ss_pred hhhhccCHHHH-HHHHhhccCCCcCCCcCHHHHHHHHHHH
Confidence 00000 111111 2346678999999988764
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-40 Score=294.82 Aligned_cols=229 Identities=17% Similarity=0.186 Sum_probs=189.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++...+.++.++.||++|+++++++++++.+.+
T Consensus 3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (257)
T 3imf_A 3 AMKEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKF 81 (257)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999996 89999999999999988888878889999999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
|++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|+|.+++. .|+||++||..+..+
T Consensus 82 g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~---------- 149 (257)
T 3imf_A 82 GRIDILINNAAGNFI-CPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGI-KGNIINMVATYAWDA---------- 149 (257)
T ss_dssp SCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-CCEEEEECCGGGGSC----------
T ss_pred CCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCC-CcEEEEECchhhccC----------
Confidence 999999999998644 67788999999999999999999999999999854321 479999999988753
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.++...|++||++++.|++.++.|+..+.||+||+|+||+|+|++..........
T Consensus 150 -------------------------~~~~~~Y~asKaa~~~l~~~la~e~~~~~gIrvn~v~PG~v~t~~~~~~~~~~~~ 204 (257)
T 3imf_A 150 -------------------------GPGVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWISEE 204 (257)
T ss_dssp -------------------------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCBSSCCCC-------C
T ss_pred -------------------------CCCcHHHHHHHHHHHHHHHHHHHHhccccCeEEEEEEECCCcCCcchhhcccCHH
Confidence 3677899999999999999999998425699999999999999875432111000
Q ss_pred hhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 323 LLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
............++.+|||+|+.+++|
T Consensus 205 ~~~~~~~~~p~~r~~~pedvA~~v~~L 231 (257)
T 3imf_A 205 MAKRTIQSVPLGRLGTPEEIAGLAYYL 231 (257)
T ss_dssp CSHHHHTTSTTCSCBCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 111111122235678999999988754
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-40 Score=296.79 Aligned_cols=229 Identities=20% Similarity=0.208 Sum_probs=192.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|++|||||++|||+++|+.|+++|+ +|++++|+.+.++++.+++...+.++.++.||++|+++++++++++.+.+
T Consensus 5 ~l~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (280)
T 3tox_A 5 RLEGKIAIVTGASSGIGRAAALLFAREGA-KVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRF 83 (280)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999996 89999999999999988888778889999999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||..+...
T Consensus 84 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~~---------- 151 (280)
T 3tox_A 84 GGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALG--GGSLTFTSSFVGHTA---------- 151 (280)
T ss_dssp SCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCSBTTTB----------
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEEcChhhCcC----------
Confidence 99999999999875556788899999999999999999999999999998876 579999999988621
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
+.++...|++||++++.+++.++.|+ .++||+||+|+||+|+|++..........
T Consensus 152 ------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gIrvn~v~PG~v~T~~~~~~~~~~~~ 206 (280)
T 3tox_A 152 ------------------------GFAGVAPYAASKAGLIGLVQALAVEL-GARGIRVNALLPGGTDTPANFANLPGAAP 206 (280)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-HTTTEEEEEEEECSBSSTTSGGGSTTCCT
T ss_pred ------------------------CCCCchhHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEEECCCCCchhhhhccccCH
Confidence 13677899999999999999999999 67799999999999999976432110000
Q ss_pred hhhhhhH-HhhhcCccchhhhhhhcccc
Q 018819 323 LLFPPFQ-KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~-~~~~~~~~s~~~~a~~i~~~ 349 (350)
.....+. .....++.+|+|+|+.++++
T Consensus 207 ~~~~~~~~~~p~~r~~~pedvA~~v~~L 234 (280)
T 3tox_A 207 ETRGFVEGLHALKRIARPEEIAEAALYL 234 (280)
T ss_dssp HHHHHHHTTSTTSSCBCHHHHHHHHHHH
T ss_pred HHHHHHhccCccCCCcCHHHHHHHHHHH
Confidence 0001111 11235678999999988764
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-40 Score=295.86 Aligned_cols=228 Identities=17% Similarity=0.177 Sum_probs=193.8
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
++++++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++...+.++.++.||++|+++++++++++.+
T Consensus 21 ~~~l~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 99 (271)
T 4ibo_A 21 IFDLGGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDE 99 (271)
T ss_dssp GGCCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999999996 999999999998888888877778899999999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
.++++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||..+..+
T Consensus 100 ~~g~iD~lv~nAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iV~isS~~~~~~-------- 168 (271)
T 4ibo_A 100 QGIDVDILVNNAGIQFR-KPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRG--YGKIVNIGSLTSELA-------- 168 (271)
T ss_dssp HTCCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTSB--------
T ss_pred HCCCCCEEEECCCCCCC-CCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEEccHHhCCC--------
Confidence 99999999999998654 6778899999999999999999999999999998765 479999999988753
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~ 320 (350)
.++...|++||++++.+++.++.|+ .++||+||+|+||+|+|++..... ..
T Consensus 169 ---------------------------~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~-~~ 219 (271)
T 4ibo_A 169 ---------------------------RATVAPYTVAKGGIKMLTRAMAAEW-AQYGIQANAIGPGYMLTDMNQALI-DN 219 (271)
T ss_dssp ---------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSGGGHHHH-HC
T ss_pred ---------------------------CCCchhHHHHHHHHHHHHHHHHHHH-hhhCeEEEEEEeccEeCcchhhcc-cC
Confidence 3577899999999999999999999 677999999999999998753211 00
Q ss_pred HHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 ~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..............++.+|+|+|+.++++
T Consensus 220 ~~~~~~~~~~~p~~r~~~pedva~~v~~L 248 (271)
T 4ibo_A 220 PEFDAWVKARTPAKRWGKPQELVGTAVFL 248 (271)
T ss_dssp HHHHHHHHHHSTTCSCBCGGGGHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 01111112223346678999999988754
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-40 Score=294.13 Aligned_cols=227 Identities=21% Similarity=0.192 Sum_probs=191.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|++|||||++|||+++|++|+++|+ +|++++|+.+.+++..+++...+.++.+++||++|+++++++++++.+++
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 86 (264)
T 3ucx_A 8 LLTDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAY 86 (264)
T ss_dssp TTTTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CcCCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 47899999999999999999999999996 89999999999888888887778889999999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|+||||||+.....++.+.+.++|++++++|+.++++++++++|.|.+++ |+||++||..+..+
T Consensus 87 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~---g~iv~isS~~~~~~---------- 153 (264)
T 3ucx_A 87 GRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK---GAVVNVNSMVVRHS---------- 153 (264)
T ss_dssp SCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHT---CEEEEECCGGGGCC----------
T ss_pred CCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC---CEEEEECcchhccC----------
Confidence 99999999999865557788899999999999999999999999999998753 79999999988753
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh--
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL-- 320 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~-- 320 (350)
.+++..|++||++++.+++.++.|+ .++||+||+|+||+|+|++........
T Consensus 154 -------------------------~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~~~~~ 207 (264)
T 3ucx_A 154 -------------------------QAKYGAYKMAKSALLAMSQTLATEL-GEKGIRVNSVLPGYIWGGTLKSYFEHQAG 207 (264)
T ss_dssp -------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEESSCBSHHHHHHHHHHHH
T ss_pred -------------------------CCccHHHHHHHHHHHHHHHHHHHHh-CccCeEEEEEecCccccccHHHHHHhhhh
Confidence 3677899999999999999999999 677999999999999998753211100
Q ss_pred ------HHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 321 ------FRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 ------~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..............++.+|+|+|+.+++|
T Consensus 208 ~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~L 242 (264)
T 3ucx_A 208 KYGTSVEDIYNAAAAGSDLKRLPTEDEVASAILFM 242 (264)
T ss_dssp HTTCCHHHHHHHHHTTSSSSSCCBHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHhccCCcccCCCHHHHHHHHHHH
Confidence 00000011111235678999999988764
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-39 Score=295.74 Aligned_cols=230 Identities=17% Similarity=0.179 Sum_probs=189.4
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC------------hhHHHHHHHHhccCCCceEEEEccCCCHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD------------FLKAERAAKSAGMAKENYTIMHLDLASLD 149 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~------------~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~ 149 (350)
..+++|++|||||++|||+++|+.|+++|+ +|++++|+ .+.+++..+++...+.++.+++||++|++
T Consensus 24 ~~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~ 102 (299)
T 3t7c_A 24 GKVEGKVAFITGAARGQGRSHAITLAREGA-DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFD 102 (299)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred cccCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHH
Confidence 357899999999999999999999999996 88888876 66777777777777788999999999999
Q ss_pred HHHHHHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCC
Q 018819 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229 (350)
Q Consensus 150 ~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~ 229 (350)
+++++++++.+.+|++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|.+++. .|+||++||.++
T Consensus 103 ~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-~g~Iv~isS~~~ 181 (299)
T 3t7c_A 103 AMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKR-GGSIVFTSSIGG 181 (299)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTS-CEEEEEECCGGG
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CcEEEEECChhh
Confidence 9999999999999999999999998765445888999999999999999999999999999876542 479999999988
Q ss_pred CCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCccc
Q 018819 230 NTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA 309 (350)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~ 309 (350)
..+ .++...|++||++++.|+++++.|+ .+.||+||+|+||+|+
T Consensus 182 ~~~-----------------------------------~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~ 225 (299)
T 3t7c_A 182 LRG-----------------------------------AENIGNYIASKHGLHGLMRTMALEL-GPRNIRVNIVCPSSVA 225 (299)
T ss_dssp TSC-----------------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESCBS
T ss_pred ccC-----------------------------------CCCcchHHHHHHHHHHHHHHHHHHh-cccCcEEEEEecCCcc
Confidence 753 3677899999999999999999999 6779999999999999
Q ss_pred CCcccccchh----------h-HHhhhh-hhHHhhhcCccchhhhhhhcccc
Q 018819 310 TTGLFREHIP----------L-FRLLFP-PFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 310 t~~~~~~~~~----------~-~~~~~~-~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
|++....... . ...... ........++.+|+|+|+.+++|
T Consensus 226 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~~~pedvA~~v~fL 277 (299)
T 3t7c_A 226 TPMLLNEPTYRMFRPDLENPTVEDFQVASRQMHVLPIPYVEPADISNAILFL 277 (299)
T ss_dssp STTTSSHHHHHHHCTTSSSCCHHHHHHHHHHHSSSSCSCBCHHHHHHHHHHH
T ss_pred CccccccchhhhhhhhhccchhhHHHHHhhhhcccCcCCCCHHHHHHHHHHH
Confidence 9976431100 0 000000 00011114567999999988764
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-40 Score=291.95 Aligned_cols=222 Identities=16% Similarity=0.124 Sum_probs=178.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|++|||||++|||+++|++|+++|+ +|++++|+.+.++++.+++...+.++.++.||++|+++++++++++.+.
T Consensus 4 ~~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~- 81 (252)
T 3h7a_A 4 TPRNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAH- 81 (252)
T ss_dssp -CCSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhh-
Confidence 56899999999999999999999999996 8999999999888888888777788999999999999999999999998
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||.++..+
T Consensus 82 g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~~---------- 148 (252)
T 3h7a_A 82 APLEVTIFNVGANVN-FPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHG--QGKIFFTGATASLRG---------- 148 (252)
T ss_dssp SCEEEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEEEEGGGTCC----------
T ss_pred CCceEEEECCCcCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEECCHHHcCC----------
Confidence 999999999999754 6788899999999999999999999999999998765 579999999988753
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEE-EEeeCCcccCCcccccchhhH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAF-ASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v-~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.++...|++||++++.|++.++.|+ .+.||+| |+|+||+|+|++.........
T Consensus 149 -------------------------~~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~v~n~v~PG~v~T~~~~~~~~~~~ 202 (252)
T 3h7a_A 149 -------------------------GSGFAAFASAKFGLRAVAQSMAREL-MPKNIHVAHLIIDSGVDTAWVRERREQMF 202 (252)
T ss_dssp -------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEEC----------------
T ss_pred -------------------------CCCCccHHHHHHHHHHHHHHHHHHh-hhcCCEEEEEecCCccCChhhhccchhhh
Confidence 3678899999999999999999999 6779999 999999999987643211110
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..+......++.+|+|+|+.++++
T Consensus 203 ----~~~~~~~~~~~~~pedvA~~~~~l 226 (252)
T 3h7a_A 203 ----GKDALANPDLLMPPAAVAGAYWQL 226 (252)
T ss_dssp ---------------CCHHHHHHHHHHH
T ss_pred ----hhhhhcCCccCCCHHHHHHHHHHH
Confidence 011111122378999999988764
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-39 Score=289.80 Aligned_cols=224 Identities=16% Similarity=0.151 Sum_probs=190.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEE-ecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMA-CRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~-~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
++|++|||||++|||+++|++|+++|+ +|++. +|+.+..++..+++...+.++.++.||++|+++++++++++.+.++
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G~-~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENGY-NIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFG 81 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 688999999999999999999999996 77765 8998888888888887788899999999999999999999999999
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCC
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (350)
++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||.++..+
T Consensus 82 ~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~--~g~iv~isS~~~~~~----------- 147 (258)
T 3oid_A 82 RLDVFVNNAASGVL-RPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNG--GGHIVSISSLGSIRY----------- 147 (258)
T ss_dssp CCCEEEECCCCCCC-SCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT--CEEEEEEEEGGGTSB-----------
T ss_pred CCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEECchhhCCC-----------
Confidence 99999999998643 6778899999999999999999999999999998876 579999999988753
Q ss_pred ccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHh
Q 018819 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL 323 (350)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~ 323 (350)
.+++..|++||++++.++++++.|+ .++||+||+|+||+|+|++..... .....
T Consensus 148 ------------------------~~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~-~~~~~ 201 (258)
T 3oid_A 148 ------------------------LENYTTVGVSKAALEALTRYLAVEL-SPKQIIVNAVSGGAIDTDALKHFP-NREDL 201 (258)
T ss_dssp ------------------------CTTCHHHHHHHHHHHHHHHHHHHHT-GGGTEEEEEEEECCBCSGGGGGCT-THHHH
T ss_pred ------------------------CCCcHHHHHHHHHHHHHHHHHHHHH-hhcCcEEEEEeeCCCcChhhhhcc-cCHHH
Confidence 3677899999999999999999999 677999999999999998763321 11111
Q ss_pred hhhhhHHhhhcCccchhhhhhhcccc
Q 018819 324 LFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 324 ~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
...........++.+|+|+|+.+++|
T Consensus 202 ~~~~~~~~p~~r~~~~~dva~~v~~L 227 (258)
T 3oid_A 202 LEDARQNTPAGRMVEIKDMVDTVEFL 227 (258)
T ss_dssp HHHHHHHCTTSSCBCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 11112223346678999999988764
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-39 Score=296.47 Aligned_cols=228 Identities=24% Similarity=0.268 Sum_probs=192.2
Q ss_pred cCccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCC-CceEEEEccCCCHHHHHHHHHH
Q 018819 79 QGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDLASLDSVRQFVDT 157 (350)
Q Consensus 79 ~~~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~-~~v~~~~~Dvs~~~~v~~~~~~ 157 (350)
..++++++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++...+ .++.++.||++|++++++++++
T Consensus 34 ~~m~~l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 112 (293)
T 3rih_A 34 KVMFDLSARSVLVTGGTKGIGRGIATVFARAGA-NVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAART 112 (293)
T ss_dssp CCTTCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHH
T ss_pred ccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHH
Confidence 345678999999999999999999999999996 99999999988888888887666 6899999999999999999999
Q ss_pred HHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCC-CCCCCC
Q 018819 158 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN-TNTLAG 236 (350)
Q Consensus 158 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~-~~~~~~ 236 (350)
+.+.++++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||..+. .+
T Consensus 113 ~~~~~g~iD~lvnnAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~iV~isS~~~~~~~---- 185 (293)
T 3rih_A 113 VVDAFGALDVVCANAGIFPE-ARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASG--RGRVILTSSITGPVTG---- 185 (293)
T ss_dssp HHHHHSCCCEEEECCCCCCC-CCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHS--SCEEEEECCSBTTTBB----
T ss_pred HHHHcCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEEeChhhccCC----
Confidence 99999999999999999754 6788999999999999999999999999999998765 4799999999875 32
Q ss_pred CCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccccc
Q 018819 237 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 316 (350)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~ 316 (350)
.++...|++||++++.|+++++.|+ .+.||+||+|+||+|+|++....
T Consensus 186 -------------------------------~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~t~~~~~~ 233 (293)
T 3rih_A 186 -------------------------------YPGWSHYGASKAAQLGFMRTAAIEL-APRGVTVNAILPGNILTEGLVDM 233 (293)
T ss_dssp -------------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCCHHHHHT
T ss_pred -------------------------------CCCCHHHHHHHHHHHHHHHHHHHHH-hhhCeEEEEEecCCCcCcchhhc
Confidence 3577899999999999999999999 67799999999999999865321
Q ss_pred chhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 317 HIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
... ............++.+|+|+|+.+++|
T Consensus 234 ~~~---~~~~~~~~~p~~r~~~p~dvA~~v~fL 263 (293)
T 3rih_A 234 GEE---YISGMARSIPMGMLGSPVDIGHLAAFL 263 (293)
T ss_dssp CHH---HHHHHHTTSTTSSCBCHHHHHHHHHHH
T ss_pred cHH---HHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 111 001111112235567899999887654
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=290.61 Aligned_cols=223 Identities=22% Similarity=0.245 Sum_probs=188.3
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
++.+++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++. .++.+++||++|+++++++++++.+
T Consensus 4 ~~~l~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~ 79 (248)
T 3op4_A 4 FMNLEGKVALVTGASRGIGKAIAELLAERGA-KVIGTATSESGAQAISDYLG---DNGKGMALNVTNPESIEAVLKAITD 79 (248)
T ss_dssp TTCCTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHG---GGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc---ccceEEEEeCCCHHHHHHHHHHHHH
Confidence 3567899999999999999999999999996 89999999888888777764 3578899999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
++|++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||.++..+
T Consensus 80 ~~g~iD~lv~nAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~--~g~iv~isS~~~~~~-------- 148 (248)
T 3op4_A 80 EFGGVDILVNNAGITRD-NLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKR--QGRIINVGSVVGTMG-------- 148 (248)
T ss_dssp HHCCCSEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHHHC--------
T ss_pred HcCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CCEEEEEcchhhcCC--------
Confidence 99999999999999754 6778899999999999999999999999999998765 579999999988753
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~ 320 (350)
.++...|++||++++.++++++.|+ .++||+||+|+||+|+|++..... +.
T Consensus 149 ---------------------------~~~~~~Y~asK~a~~~l~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~-~~ 199 (248)
T 3op4_A 149 ---------------------------NAGQANYAAAKAGVIGFTKSMAREV-ASRGVTVNTVAPGFIETDMTKALN-DE 199 (248)
T ss_dssp ---------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBSSTTTTTSC-HH
T ss_pred ---------------------------CCCChHHHHHHHHHHHHHHHHHHHH-HHhCeEEEEEeeCCCCCchhhhcC-HH
Confidence 3678899999999999999999999 677999999999999998753211 11
Q ss_pred HHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 ~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
............++.+|+|+|+.++++
T Consensus 200 --~~~~~~~~~p~~r~~~p~dva~~v~~L 226 (248)
T 3op4_A 200 --QRTATLAQVPAGRLGDPREIASAVAFL 226 (248)
T ss_dssp --HHHHHHHTCTTCSCBCHHHHHHHHHHH
T ss_pred --HHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 011111222345678999999988754
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-39 Score=293.33 Aligned_cols=229 Identities=18% Similarity=0.214 Sum_probs=188.2
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC------------hhHHHHHHHHhccCCCceEEEEccCCCH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD------------FLKAERAAKSAGMAKENYTIMHLDLASL 148 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~------------~~~~~~~~~~l~~~~~~v~~~~~Dvs~~ 148 (350)
+.++++|++|||||++|||+++|++|+++|+ +|++++|+ .+..++..+++...+.++.+++||++|+
T Consensus 5 m~~l~~k~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 83 (281)
T 3s55_A 5 MADFEGKTALITGGARGMGRSHAVALAEAGA-DIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDR 83 (281)
T ss_dssp -CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred ccccCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCH
Confidence 4568999999999999999999999999996 89999996 5566666666666678899999999999
Q ss_pred HHHHHHHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccC
Q 018819 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (350)
Q Consensus 149 ~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~ 228 (350)
++++++++++.+.+|++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||..
T Consensus 84 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~ 160 (281)
T 3s55_A 84 AALESFVAEAEDTLGGIDIAITNAGISTI-ALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRN--YGRIVTVSSML 160 (281)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEECCCCCCC-CCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGG
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEECChh
Confidence 99999999999999999999999998754 6788999999999999999999999999999998765 57999999998
Q ss_pred CCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcc
Q 018819 229 GNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI 308 (350)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v 308 (350)
+..+ .++...|++||++++.++++++.|+ .++||+||+|+||+|
T Consensus 161 ~~~~-----------------------------------~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~vn~v~PG~v 204 (281)
T 3s55_A 161 GHSA-----------------------------------NFAQASYVSSKWGVIGLTKCAAHDL-VGYGITVNAVAPGNI 204 (281)
T ss_dssp GGSC-----------------------------------CTTCHHHHHHHHHHHHHHHHHHHHT-GGGTEEEEEEEECSB
T ss_pred hcCC-----------------------------------CCCCchhHHHHHHHHHHHHHHHHHH-hhcCcEEEEEecCcc
Confidence 8753 3577899999999999999999999 677999999999999
Q ss_pred cCCcccccc-----hhh-HHhh----hhhh--HHhhhcCccchhhhhhhcccc
Q 018819 309 ATTGLFREH-----IPL-FRLL----FPPF--QKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 309 ~t~~~~~~~-----~~~-~~~~----~~~~--~~~~~~~~~s~~~~a~~i~~~ 349 (350)
+|++..... .+. .... ...+ ......++.+|+|+|+.+++|
T Consensus 205 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~dvA~~v~~L 257 (281)
T 3s55_A 205 ETPMTHNDFVFGTMRPDLEKPTLKDVESVFASLHLQYAPFLKPEEVTRAVLFL 257 (281)
T ss_dssp CSTTTSSHHHHHC-------CCHHHHHHHHHHHCSSSCSCBCHHHHHHHHHHH
T ss_pred cCccccchhhhccccccccccchhHHHHHHHhhhccCcCCCCHHHHHHHHHHH
Confidence 999764311 000 0000 0000 001114578999999988764
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-40 Score=294.98 Aligned_cols=230 Identities=21% Similarity=0.235 Sum_probs=192.2
Q ss_pred CccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhcc-CCCceEEEEccCCCHHHHHHHHHHH
Q 018819 80 GKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTF 158 (350)
Q Consensus 80 ~~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~-~~~~v~~~~~Dvs~~~~v~~~~~~~ 158 (350)
.++.+++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++.. .+.++.+++||++|+++++++++++
T Consensus 14 ~~~~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 92 (266)
T 4egf_A 14 GVLRLDGKRALITGATKGIGADIARAFAAAGA-RLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRA 92 (266)
T ss_dssp GGGCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHH
T ss_pred cccCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 34578999999999999999999999999996 899999999888888777754 4678999999999999999999999
Q ss_pred HHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCC
Q 018819 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (350)
Q Consensus 159 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (350)
.+.++++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++. .|+||++||..+..+
T Consensus 93 ~~~~g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-~g~iv~isS~~~~~~------ 164 (266)
T 4egf_A 93 AEAFGGLDVLVNNAGISHP-QPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGE-GGAIITVASAAALAP------ 164 (266)
T ss_dssp HHHHTSCSEEEEECCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-CEEEEEECCGGGTSC------
T ss_pred HHHcCCCCEEEECCCcCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CeEEEEEcchhhccC------
Confidence 9999999999999999754 67788999999999999999999999999999987542 379999999988753
Q ss_pred CCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch
Q 018819 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (350)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~ 318 (350)
.++...|++||++++.+++.++.|+ .++||+||+|+||+|+|++......
T Consensus 165 -----------------------------~~~~~~Y~asK~a~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~~ 214 (266)
T 4egf_A 165 -----------------------------LPDHYAYCTSKAGLVMATKVLAREL-GPHGIRANSVCPTVVLTEMGQRVWG 214 (266)
T ss_dssp -----------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESCBCSHHHHHHTC
T ss_pred -----------------------------CCCChHHHHHHHHHHHHHHHHHHHH-hhhCeEEEEEEeCCCcCchhhhhcc
Confidence 3677899999999999999999999 6779999999999999986532111
Q ss_pred hhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
. ..............++.+|+|+|+.+++|
T Consensus 215 ~-~~~~~~~~~~~p~~r~~~p~dva~~v~~L 244 (266)
T 4egf_A 215 D-EAKSAPMIARIPLGRFAVPHEVSDAVVWL 244 (266)
T ss_dssp S-HHHHHHHHTTCTTSSCBCHHHHHHHHHHH
T ss_pred C-hHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 0 01111112222345678999999988764
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-39 Score=293.39 Aligned_cols=229 Identities=23% Similarity=0.256 Sum_probs=189.9
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEec-------------ChhHHHHHHHHhccCCCceEEEEccCCC
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-------------DFLKAERAAKSAGMAKENYTIMHLDLAS 147 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r-------------~~~~~~~~~~~l~~~~~~v~~~~~Dvs~ 147 (350)
+..+++|++|||||++|||+++|++|+++|+ +|++++| +.+.+++..+++...+.++.++.||++|
T Consensus 10 ~~~l~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~ 88 (280)
T 3pgx_A 10 AGSLQGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRD 88 (280)
T ss_dssp -CTTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTC
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCC
Confidence 3468999999999999999999999999996 8999887 6677778888887778889999999999
Q ss_pred HHHHHHHHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEecc
Q 018819 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 227 (350)
Q Consensus 148 ~~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~ 227 (350)
+++++++++++.++++++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|+|.+++. +|+||++||.
T Consensus 89 ~~~v~~~~~~~~~~~g~id~lvnnAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-~g~iv~isS~ 166 (280)
T 3pgx_A 89 DAALRELVADGMEQFGRLDVVVANAGVLSW-GRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGN-GGSIVVVSSS 166 (280)
T ss_dssp HHHHHHHHHHHHHHHCCCCEEEECCCCCCC-BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCS-CEEEEEECCG
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCC-CCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-CCEEEEEcch
Confidence 999999999999999999999999999754 67788999999999999999999999999999987532 4799999999
Q ss_pred CCCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCc
Q 018819 228 TGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGC 307 (350)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~ 307 (350)
.+..+ .++...|++||++++.|+++++.|+ .++||+||+|+||+
T Consensus 167 ~~~~~-----------------------------------~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~PG~ 210 (280)
T 3pgx_A 167 AGLKA-----------------------------------TPGNGHYSASKHGLTALTNTLAIEL-GEYGIRVNSIHPYS 210 (280)
T ss_dssp GGTSC-----------------------------------CTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECS
T ss_pred hhccC-----------------------------------CCCchhHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCc
Confidence 88753 3678899999999999999999999 67799999999999
Q ss_pred ccCCcccccchh-hHHhhhhhhHH------hhhcCccchhhhhhhcccc
Q 018819 308 IATTGLFREHIP-LFRLLFPPFQK------YITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 308 v~t~~~~~~~~~-~~~~~~~~~~~------~~~~~~~s~~~~a~~i~~~ 349 (350)
|+|++....... ... ..+.+.. ....++.+|+|+|+.+++|
T Consensus 211 v~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~p~dvA~~v~~L 258 (280)
T 3pgx_A 211 VETPMIEPEAMMEIFA-RHPSFVHSFPPMPVQPNGFMTADEVADVVAWL 258 (280)
T ss_dssp BCSTTCCHHHHHHHHH-HCGGGGGGSCCBTTBCSSCBCHHHHHHHHHHH
T ss_pred ccCcccchhhhhhhhh-cCchhhhhhhhcccCCCCCCCHHHHHHHHHHH
Confidence 999976432110 000 0011111 1112567999999988764
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-39 Score=294.17 Aligned_cols=230 Identities=18% Similarity=0.174 Sum_probs=189.0
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC----------------hhHHHHHHHHhccCCCceEEEEccC
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD----------------FLKAERAAKSAGMAKENYTIMHLDL 145 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~----------------~~~~~~~~~~l~~~~~~v~~~~~Dv 145 (350)
..+++|++|||||++|||+++|+.|+++|+ +|++++|+ .+.+++..+++...+.++.++.||+
T Consensus 7 ~~l~~k~~lVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv 85 (286)
T 3uve_A 7 GRVEGKVAFVTGAARGQGRSHAVRLAQEGA-DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDV 85 (286)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCT
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCC
Confidence 357899999999999999999999999996 89998876 6677777777777778899999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEe
Q 018819 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVG 225 (350)
Q Consensus 146 s~~~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vS 225 (350)
+|+++++++++++.+.+|++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|+|.+++. .|+||++|
T Consensus 86 ~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-~g~iv~is 164 (286)
T 3uve_A 86 RDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGR-GGSIILTS 164 (286)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-CEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCC-CcEEEEEC
Confidence 99999999999999999999999999998765445788899999999999999999999999999977532 47999999
Q ss_pred ccCCCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeC
Q 018819 226 SITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYP 305 (350)
Q Consensus 226 S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~P 305 (350)
|..+..+ .++...|++||+++++|+++++.|+ .++||+||+|+|
T Consensus 165 S~~~~~~-----------------------------------~~~~~~Y~asKaa~~~~~~~la~e~-~~~gI~vn~v~P 208 (286)
T 3uve_A 165 SVGGLKA-----------------------------------YPHTGHYVAAKHGVVGLMRAFGVEL-GQHMIRVNSVHP 208 (286)
T ss_dssp CGGGTSC-----------------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEE
T ss_pred chhhccC-----------------------------------CCCccHHHHHHHHHHHHHHHHHHHh-cccCeEEEEEec
Confidence 9988753 3677899999999999999999999 677999999999
Q ss_pred CcccCCcccccch-hhHH----hhh----hh---hHHhhhcCccchhhhhhhcccc
Q 018819 306 GCIATTGLFREHI-PLFR----LLF----PP---FQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 306 G~v~t~~~~~~~~-~~~~----~~~----~~---~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
|+|+|++...... ...+ ... .. +......++.+|+|+|+.+++|
T Consensus 209 G~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~~~p~dvA~~v~fL 264 (286)
T 3uve_A 209 THVKTPMLHNEGTFKMFRPDLENPGPDDMAPICQMFHTLPIPWVEPIDISNAVLFF 264 (286)
T ss_dssp SSBSSTTTSSHHHHHHHCTTSSSCCHHHHHHHHHTTCSSSCSCBCHHHHHHHHHHH
T ss_pred CcccCCcccccchhhhccccccccchhhHHHHHHhhhccCCCcCCHHHHHHHHHHH
Confidence 9999997643110 0000 000 00 0001114567999999988764
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=294.30 Aligned_cols=228 Identities=15% Similarity=0.103 Sum_probs=190.8
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCC---ceEEEEccCCCHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE---NYTIMHLDLASLDSVRQFVDTF 158 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~---~v~~~~~Dvs~~~~v~~~~~~~ 158 (350)
+++++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++...+. ++.++.||++|+++++++++++
T Consensus 7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 85 (281)
T 3svt_A 7 LSFQDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAV 85 (281)
T ss_dssp -CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHH
T ss_pred cCcCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHH
Confidence 467899999999999999999999999996 899999999888888888866554 7899999999999999999999
Q ss_pred HHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCC
Q 018819 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (350)
Q Consensus 159 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (350)
.+.+|++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||.++..+
T Consensus 86 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~~------ 157 (281)
T 3svt_A 86 TAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGG--GGSFVGISSIAASNT------ 157 (281)
T ss_dssp HHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CEEEEEECCHHHHSC------
T ss_pred HHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEeCHHHcCC------
Confidence 999999999999999855556788899999999999999999999999999998765 589999999988753
Q ss_pred CCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch
Q 018819 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (350)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~ 318 (350)
.++...|++||++++.++++++.|+ .++||+||+|+||+|+|++......
T Consensus 158 -----------------------------~~~~~~Y~asK~a~~~l~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~ 207 (281)
T 3svt_A 158 -----------------------------HRWFGAYGVTKSAVDHLMQLAADEL-GASWVRVNSIRPGLIRTDLVAAITE 207 (281)
T ss_dssp -----------------------------CTTCTHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSGGGHHHHT
T ss_pred -----------------------------CCCChhHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEEeCcCcCcchhhccc
Confidence 3567899999999999999999999 6779999999999999987532110
Q ss_pred hhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
. ..............++.+|+|+|+.++++
T Consensus 208 ~-~~~~~~~~~~~p~~r~~~~~dva~~~~~l 237 (281)
T 3svt_A 208 S-AELSSDYAMCTPLPRQGEVEDVANMAMFL 237 (281)
T ss_dssp C-HHHHHHHHHHCSSSSCBCHHHHHHHHHHH
T ss_pred C-HHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 0 01111111222335677999999987754
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=293.63 Aligned_cols=228 Identities=19% Similarity=0.190 Sum_probs=188.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEec-------------ChhHHHHHHHHhccCCCceEEEEccCCCHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-------------DFLKAERAAKSAGMAKENYTIMHLDLASLD 149 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r-------------~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~ 149 (350)
.+++|++|||||++|||+++|++|+++|+ +|++++| +.+.+++..+++...+.++.++.||++|++
T Consensus 8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 86 (277)
T 3tsc_A 8 KLEGRVAFITGAARGQGRAHAVRMAAEGA-DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFD 86 (277)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred ccCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 57899999999999999999999999996 8999888 566777777777767788999999999999
Q ss_pred HHHHHHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCC
Q 018819 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229 (350)
Q Consensus 150 ~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~ 229 (350)
+++++++++.+.++++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++. .|+||++||.++
T Consensus 87 ~v~~~~~~~~~~~g~id~lvnnAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-~g~iv~isS~~~ 164 (277)
T 3tsc_A 87 RLRKVVDDGVAALGRLDIIVANAGVAAP-QAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGR-GGSIILISSAAG 164 (277)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-CEEEEEECCGGG
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC-CCEEEEEccHhh
Confidence 9999999999999999999999999754 67788999999999999999999999999999987542 379999999998
Q ss_pred CCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCccc
Q 018819 230 NTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA 309 (350)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~ 309 (350)
..+ .++...|++||++++.|++.++.|+ .++||+||+|+||+|+
T Consensus 165 ~~~-----------------------------------~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~PG~v~ 208 (277)
T 3tsc_A 165 MKM-----------------------------------QPFMIHYTASKHAVTGLARAFAAEL-GKHSIRVNSVHPGPVN 208 (277)
T ss_dssp TSC-----------------------------------CSSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESSBS
T ss_pred CCC-----------------------------------CCCchhhHHHHHHHHHHHHHHHHHh-CccCeEEEEEEeCCCc
Confidence 753 3677899999999999999999999 6779999999999999
Q ss_pred CCcccccchh-hHHh--hhhhhH----HhhhcCccchhhhhhhcccc
Q 018819 310 TTGLFREHIP-LFRL--LFPPFQ----KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 310 t~~~~~~~~~-~~~~--~~~~~~----~~~~~~~~s~~~~a~~i~~~ 349 (350)
|++....... .... ..+... .....++.+|||+|+.+++|
T Consensus 209 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~~~pedvA~~v~~L 255 (277)
T 3tsc_A 209 TPMGSGDMVTAVGQAMETNPQLSHVLTPFLPDWVAEPEDIADTVCWL 255 (277)
T ss_dssp SGGGSHHHHHHHHHHHHTCGGGTTTTCCSSSCSCBCHHHHHHHHHHH
T ss_pred CCcccchhhhhhhhcccccHHHHHHhhhccCCCCCCHHHHHHHHHHH
Confidence 9976432110 0000 001111 11112467999999998764
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=294.60 Aligned_cols=225 Identities=23% Similarity=0.221 Sum_probs=190.7
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
..+++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++...+.++.++.||++|.++++++++++.+.
T Consensus 24 ~~l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 102 (270)
T 3ftp_A 24 KTLDKQVAIVTGASRGIGRAIALELARRGA-MVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKE 102 (270)
T ss_dssp CTTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999996 9999999998888888888766778899999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|+||||||+... ..+.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||.++..+
T Consensus 103 ~g~iD~lvnnAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~~--------- 170 (270)
T 3ftp_A 103 FGALNVLVNNAGITQD-QLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKAR--GGRIVNITSVVGSAG--------- 170 (270)
T ss_dssp HSCCCEEEECCCCCCC-BCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHHHC---------
T ss_pred cCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CCEEEEECchhhCCC---------
Confidence 9999999999998754 6778899999999999999999999999999998765 589999999988753
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.+++..|++||++++.|+++++.|+ .++||+||+|+||+|+|++........
T Consensus 171 --------------------------~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~~~~- 222 (270)
T 3ftp_A 171 --------------------------NPGQVNYAAAKAGVAGMTRALAREI-GSRGITVNCVAPGFIDTDMTKGLPQEQ- 222 (270)
T ss_dssp --------------------------CTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSHHHHHSCHHH-
T ss_pred --------------------------CCCchhHHHHHHHHHHHHHHHHHHH-hhhCeEEEEEEeCCCcCcchhhcCHHH-
Confidence 3678899999999999999999999 677999999999999998653211110
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
...........++.+|||+|+.+++|
T Consensus 223 --~~~~~~~~p~~r~~~pedvA~~v~~L 248 (270)
T 3ftp_A 223 --QTALKTQIPLGRLGSPEDIAHAVAFL 248 (270)
T ss_dssp --HHHHHTTCTTCSCBCHHHHHHHHHHH
T ss_pred --HHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 00111112235677999999988754
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-39 Score=290.65 Aligned_cols=220 Identities=20% Similarity=0.195 Sum_probs=179.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
+.+|++|||||++|||+++|++|+++|+ +|++++|+.+.++++.+++...+.++.++.||++|+++++++++++.+.+|
T Consensus 2 l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 80 (264)
T 3tfo_A 2 VMDKVILITGASGGIGEGIARELGVAGA-KILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWG 80 (264)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4689999999999999999999999996 899999999998888888877778899999999999999999999999999
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCC
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (350)
++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||.++..+
T Consensus 81 ~iD~lVnnAG~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~IV~isS~~~~~~----------- 146 (264)
T 3tfo_A 81 RIDVLVNNAGVMPL-SPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQR--SGQIINIGSIGALSV----------- 146 (264)
T ss_dssp CCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTCC-----------
T ss_pred CCCEEEECCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CeEEEEEcCHHHccc-----------
Confidence 99999999998644 6788899999999999999999999999999998765 579999999988753
Q ss_pred ccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHh
Q 018819 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL 323 (350)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~ 323 (350)
.++...|++||++++.++++++.|+ + ||+||+|+||+|+|++..........
T Consensus 147 ------------------------~~~~~~Y~asKaal~~l~~~la~e~--~-gIrvn~v~PG~v~T~~~~~~~~~~~~- 198 (264)
T 3tfo_A 147 ------------------------VPTAAVYCATKFAVRAISDGLRQES--T-NIRVTCVNPGVVESELAGTITHEETM- 198 (264)
T ss_dssp ------------------------CTTCHHHHHHHHHHHHHHHHHHHHC--S-SEEEEEEEECCC---------------
T ss_pred ------------------------CCCChhHHHHHHHHHHHHHHHHHhC--C-CCEEEEEecCCCcCcccccccchhHH-
Confidence 3677899999999999999999997 3 99999999999999875321111000
Q ss_pred hhhhhHHhhhcCccchhhhhhhcccc
Q 018819 324 LFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 324 ~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
...........+|+|+|+.++++
T Consensus 199 ---~~~~~~~~~~~~pedvA~~v~~l 221 (264)
T 3tfo_A 199 ---AAMDTYRAIALQPADIARAVRQV 221 (264)
T ss_dssp ------------CCCHHHHHHHHHHH
T ss_pred ---HHHHhhhccCCCHHHHHHHHHHH
Confidence 00011112247999999988764
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-39 Score=294.17 Aligned_cols=228 Identities=18% Similarity=0.201 Sum_probs=189.3
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhcc-CCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~-~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
..+++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++.. .+.++.+++||++|+++++++++++.+
T Consensus 23 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 101 (277)
T 4fc7_A 23 DLLRDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALK 101 (277)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999999999996 999999998887777776643 366899999999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
+++++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||..+..+
T Consensus 102 ~~g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~~-------- 170 (277)
T 4fc7_A 102 EFGRIDILINCAAGNFL-CPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDH--GGVIVNITATLGNRG-------- 170 (277)
T ss_dssp HHSCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHH--CEEEEEECCSHHHHT--------
T ss_pred HcCCCCEEEECCcCCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CCEEEEECchhhCCC--------
Confidence 99999999999998644 6778899999999999999999999999999987654 479999999988753
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~ 320 (350)
.++...|++||++++.++++++.|+ .++||+||+|+||+|+|++........
T Consensus 171 ---------------------------~~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~~~ 222 (277)
T 4fc7_A 171 ---------------------------QALQVHAGSAKAAVDAMTRHLAVEW-GPQNIRVNSLAPGPISGTEGLRRLGGP 222 (277)
T ss_dssp ---------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBSSSHHHHHHSCC
T ss_pred ---------------------------CCCcHHHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEEECCEecchhhhhccCC
Confidence 3577899999999999999999999 677999999999999998643221111
Q ss_pred HHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 ~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..............++.+|+|+|+.+++|
T Consensus 223 ~~~~~~~~~~~p~~r~~~p~dvA~~v~fL 251 (277)
T 4fc7_A 223 QASLSTKVTASPLQRLGNKTEIAHSVLYL 251 (277)
T ss_dssp HHHHHHHHHTSTTSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCCcCHHHHHHHHHHH
Confidence 11111112222346678999999988764
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-39 Score=291.33 Aligned_cols=225 Identities=22% Similarity=0.219 Sum_probs=188.0
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
.++++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++ +.++.++.||++|+++++++++++.+.
T Consensus 25 ~~l~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 100 (277)
T 3gvc_A 25 PDLAGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDGDAADAAATKI---GCGAAACRVDVSDEQQIIAMVDACVAA 100 (277)
T ss_dssp --CTTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHH---CSSCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHc---CCcceEEEecCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999996 9999999988888877776 467899999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||..+..+
T Consensus 101 ~g~iD~lvnnAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~Iv~isS~~~~~~--------- 168 (277)
T 3gvc_A 101 FGGVDKLVANAGVVHL-ASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERG--GGAIVNLSSLAGQVA--------- 168 (277)
T ss_dssp HSSCCEEEECCCCCCC-BCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CEEEEEECCGGGTSC---------
T ss_pred cCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEEcchhhccC---------
Confidence 9999999999999754 6788899999999999999999999999999998765 589999999988753
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch---
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI--- 318 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~--- 318 (350)
.++...|++||++++.+++.++.|+ .++||+||+|+||+|+|++......
T Consensus 169 --------------------------~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~t~~~~~~~~~~~ 221 (277)
T 3gvc_A 169 --------------------------VGGTGAYGMSKAGIIQLSRITAAEL-RSSGIRSNTLLPAFVDTPMQQTAMAMFD 221 (277)
T ss_dssp --------------------------CTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHHHHTCC-
T ss_pred --------------------------CCCchhHHHHHHHHHHHHHHHHHHh-cccCeEEEEEeeCCccCchHHHhhhcch
Confidence 3678899999999999999999999 6779999999999999986532110
Q ss_pred -hhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 319 -PLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 -~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
................++.+|||+|+.+++|
T Consensus 222 ~~~~~~~~~~~~~~~~~r~~~pedvA~~v~~L 253 (277)
T 3gvc_A 222 GALGAGGARSMIARLQGRMAAPEEMAGIVVFL 253 (277)
T ss_dssp -----CCHHHHHHHHHSSCBCHHHHHHHHHHH
T ss_pred hhHHHHhhhhhhhccccCCCCHHHHHHHHHHH
Confidence 0001111111133346788999999988764
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=293.79 Aligned_cols=227 Identities=22% Similarity=0.215 Sum_probs=187.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++...+.++.++.||++|+++++++++++.+.+
T Consensus 21 m~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 99 (279)
T 3sju_A 21 MSRPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERF 99 (279)
T ss_dssp ----CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 45789999999999999999999999996 89999999998888888887778889999999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHH--HHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLD--DLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~--~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
|++|+||||||+... .++.+.+.++|++++++|+.|+++++++++| .|.+++ .|+||++||.++..+
T Consensus 100 g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~--~g~iV~isS~~~~~~-------- 168 (279)
T 3sju_A 100 GPIGILVNSAGRNGG-GETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAG--WGRIVNIASTGGKQG-------- 168 (279)
T ss_dssp CSCCEEEECCCCCCC-SCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHT--CEEEEEECCGGGTSC--------
T ss_pred CCCcEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcC--CcEEEEECChhhccC--------
Confidence 999999999998654 6778899999999999999999999999999 466554 479999999988753
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch--
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-- 318 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~-- 318 (350)
.++...|++||++++.+++.++.|+ .+.||+||+|+||+|+|++......
T Consensus 169 ---------------------------~~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~~~~ 220 (279)
T 3sju_A 169 ---------------------------VMYAAPYTASKHGVVGFTKSVGFEL-AKTGITVNAVCPGYVETPMAERVREGY 220 (279)
T ss_dssp ---------------------------CTTCHHHHHHHHHHHHHHHHHHHHT-GGGTEEEEEEEESSBCSHHHHHHHHSC
T ss_pred ---------------------------CCCChhHHHHHHHHHHHHHHHHHHH-HhhCcEEEEEeeCcccchHHHHHHhhh
Confidence 3577899999999999999999999 6779999999999999986522100
Q ss_pred ------hhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 319 ------PLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ------~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
................++.+|||+|+.+++|
T Consensus 221 ~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L 257 (279)
T 3sju_A 221 ARHWGVTEQEVHERFNAKIPLGRYSTPEEVAGLVGYL 257 (279)
T ss_dssp CSSSCCCHHHHHHHHHTTCTTSSCBCHHHHHHHHHHH
T ss_pred hhcccCChHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 0000000111112235678999999988764
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-39 Score=290.70 Aligned_cols=228 Identities=21% Similarity=0.175 Sum_probs=191.8
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
.+++++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++...+.++.+++||++|+++++++++++.+
T Consensus 27 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 105 (276)
T 3r1i_A 27 LFDLSGKRALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTG 105 (276)
T ss_dssp GGCCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999999999996 899999999888888888877777899999999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
+++++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++. +|+||++||.++..+.
T Consensus 106 ~~g~iD~lvnnAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~-~g~iv~isS~~~~~~~------- 176 (276)
T 3r1i_A 106 ELGGIDIAVCNAGIVSV-QAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGL-GGTIITTASMSGHIIN------- 176 (276)
T ss_dssp HHSCCSEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-CEEEEEECCGGGTSCC-------
T ss_pred HcCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CcEEEEECchHhcccC-------
Confidence 99999999999999754 67778899999999999999999999999999987642 3799999999887532
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~ 320 (350)
..++...|++||++++.++++++.|+ .++||+||+|+||+|+|++.... ...
T Consensus 177 --------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gIrvn~v~PG~v~T~~~~~~-~~~ 228 (276)
T 3r1i_A 177 --------------------------IPQQVSHYCTSKAAVVHLTKAMAVEL-APHQIRVNSVSPGYIRTELVEPL-ADY 228 (276)
T ss_dssp --------------------------CSSCCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCSTTTGGG-GGG
T ss_pred --------------------------CCCCcchHHHHHHHHHHHHHHHHHHH-hhcCcEEEEEeeCCCcCCccccc-hHH
Confidence 11356789999999999999999999 66799999999999999876321 111
Q ss_pred HHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 ~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
...........++.+|+|+|+.+++|
T Consensus 229 ---~~~~~~~~p~~r~~~pedvA~~v~fL 254 (276)
T 3r1i_A 229 ---HALWEPKIPLGRMGRPEELTGLYLYL 254 (276)
T ss_dssp ---HHHHGGGSTTSSCBCGGGSHHHHHHH
T ss_pred ---HHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 11111122235678999999988764
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-39 Score=291.41 Aligned_cols=225 Identities=20% Similarity=0.224 Sum_probs=187.9
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+++++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++ +.++.+++||++|+++++++++++.+.
T Consensus 23 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 98 (277)
T 4dqx_A 23 MDLNQRVCIVTGGGSGIGRATAELFAKNGA-YVVVADVNEDAAVRVANEI---GSKAFGVRVDVSSAKDAESMVEKTTAK 98 (277)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHH---CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 567899999999999999999999999996 9999999988887777665 457899999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
+|++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||.++..+
T Consensus 99 ~g~iD~lv~nAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~~--------- 166 (277)
T 4dqx_A 99 WGRVDVLVNNAGFGTT-GNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNG--GGSIINTTSYTATSA--------- 166 (277)
T ss_dssp HSCCCEEEECCCCCCC-BCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTT--CEEEEEECCGGGTSC---------
T ss_pred cCCCCEEEECCCcCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CcEEEEECchhhCcC---------
Confidence 9999999999998654 6788899999999999999999999999999998765 579999999988753
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch---
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI--- 318 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~--- 318 (350)
.++...|++||++++.+++.++.|+ .++||+||+|+||+|+|+++.....
T Consensus 167 --------------------------~~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~~~~~ 219 (277)
T 4dqx_A 167 --------------------------IADRTAYVASKGAISSLTRAMAMDH-AKEGIRVNAVAPGTIDSPYFTKIFAEAK 219 (277)
T ss_dssp --------------------------CTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHHHHHTCS
T ss_pred --------------------------CCCChhHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCcCcCchhhhhccccc
Confidence 3678899999999999999999999 6779999999999999987422110
Q ss_pred hhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
................++.+|+|+|+.++++
T Consensus 220 ~~~~~~~~~~~~~~~~r~~~pedvA~~v~~L 250 (277)
T 4dqx_A 220 DPAKLRSDFNARAVMDRMGTAEEIAEAMLFL 250 (277)
T ss_dssp CHHHHHHHHHTTSTTCSCBCHHHHHHHHHHH
T ss_pred chhHHHHHHHhcCcccCCcCHHHHHHHHHHH
Confidence 0001000011112235678999999988764
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=288.62 Aligned_cols=222 Identities=20% Similarity=0.224 Sum_probs=187.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++ +.++.++.||++|+++++++++++.+.+
T Consensus 3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 78 (247)
T 3rwb_A 3 RLAGKTALVTGAAQGIGKAIAARLAADGA-TVIVSDINAEGAKAAAASI---GKKARAIAADISDPGSVKALFAEIQALT 78 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHH---CTTEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCceEEEEcCCCCHHHHHHHHHHHHHHC
Confidence 57899999999999999999999999996 8999999988888877776 4678999999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
|++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|+|.+++. .|+||++||..+..+
T Consensus 79 g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~---------- 146 (247)
T 3rwb_A 79 GGIDILVNNASIVPF-VAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGK-AGRVISIASNTFFAG---------- 146 (247)
T ss_dssp SCCSEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEECCTHHHHT----------
T ss_pred CCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-CcEEEEECchhhccC----------
Confidence 999999999999744 67888999999999999999999999999999987542 379999999987753
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.+++..|++||++++.++++++.|+ .++||+||+|+||+|+|++........ .
T Consensus 147 -------------------------~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~~~-~ 199 (247)
T 3rwb_A 147 -------------------------TPNMAAYVAAKGGVIGFTRALATEL-GKYNITANAVTPGLIESDGVKASPHNE-A 199 (247)
T ss_dssp -------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHTSGGGG-G
T ss_pred -------------------------CCCchhhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCcCcCccccccChhH-H
Confidence 3678899999999999999999999 677999999999999998653321110 0
Q ss_pred hhhhhhHH-hhhcCccchhhhhhhcccc
Q 018819 323 LLFPPFQK-YITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~~-~~~~~~~s~~~~a~~i~~~ 349 (350)
...... ....+..+|+|+|+.+++|
T Consensus 200 --~~~~~~~~~~~r~~~pedva~~v~~L 225 (247)
T 3rwb_A 200 --FGFVEMLQAMKGKGQPEHIADVVSFL 225 (247)
T ss_dssp --HHHHHHHSSSCSCBCHHHHHHHHHHH
T ss_pred --HHHHhcccccCCCcCHHHHHHHHHHH
Confidence 011111 2235678999999988764
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-39 Score=289.56 Aligned_cols=224 Identities=21% Similarity=0.224 Sum_probs=187.3
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+.+++|++|||||++|||+++|++|+++|+ +|++++|+.+.+++..+++ +.++.++.||++|+++++++++++.++
T Consensus 7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (271)
T 3tzq_B 7 AELENKVAIITGACGGIGLETSRVLARAGA-RVVLADLPETDLAGAAASV---GRGAVHHVVDLTNEVSVRALIDFTIDT 82 (271)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSCHHHHHHHH---CTTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHh---CCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999996 8999999988887777766 457889999999999999999999999
Q ss_pred CCCCcEEEEccccCCC-CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
+|++|+||||||+... ...+.+.+.++|++++++|+.|+++++++++|+|.+++ .|+||++||..+..+
T Consensus 83 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~~~~~-------- 152 (271)
T 3tzq_B 83 FGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAG--GGAIVNISSATAHAA-------- 152 (271)
T ss_dssp HSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CEEEEEECCGGGTSB--------
T ss_pred cCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCEEEEECCHHHcCC--------
Confidence 9999999999998633 45677889999999999999999999999999998875 579999999988753
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~ 320 (350)
.++...|++||++++.++++++.|+ .++||+||+|+||+|+|++......+.
T Consensus 153 ---------------------------~~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~~~ 204 (271)
T 3tzq_B 153 ---------------------------YDMSTAYACTKAAIETLTRYVATQY-GRHGVRCNAIAPGLVRTPRLEVGLPQP 204 (271)
T ss_dssp ---------------------------CSSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCCTTTC---CHH
T ss_pred ---------------------------CCCChHHHHHHHHHHHHHHHHHHHH-hhcCEEEEEEEeCCCcCccccccCCHH
Confidence 3577899999999999999999999 677999999999999999764222110
Q ss_pred HHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 ~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
............++.+|+|+|+.+++|
T Consensus 205 --~~~~~~~~~~~~r~~~p~dvA~~v~~L 231 (271)
T 3tzq_B 205 --IVDIFATHHLAGRIGEPHEIAELVCFL 231 (271)
T ss_dssp --HHHHHHTTSTTSSCBCHHHHHHHHHHH
T ss_pred --HHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 000111112235677999999988764
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-39 Score=290.93 Aligned_cols=225 Identities=21% Similarity=0.175 Sum_probs=177.9
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
+..+.+|++|||||++|||+++|++|+++|+ +|++++|+.+.+++..+++. .++.++.||++|+++++++++++.+
T Consensus 23 m~~~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~ 98 (272)
T 4dyv_A 23 MSKTGKKIAIVTGAGSGVGRAVAVALAGAGY-GVALAGRRLDALQETAAEIG---DDALCVPTDVTDPDSVRALFTATVE 98 (272)
T ss_dssp -----CCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHT---SCCEEEECCTTSHHHHHHHHHHHHH
T ss_pred hcCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhC---CCeEEEEecCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999999999996 89999999888888877764 5788999999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
++|++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|.+++.++|+||++||.++..+
T Consensus 99 ~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~-------- 170 (272)
T 4dyv_A 99 KFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSP-------- 170 (272)
T ss_dssp HHSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTSC--------
T ss_pred HcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcCC--------
Confidence 999999999999997554678889999999999999999999999999999876533479999999998753
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~ 320 (350)
.++...|++||++++.++++++.|+ .+.||+||+|+||+|+|++........
T Consensus 171 ---------------------------~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~~~~ 222 (272)
T 4dyv_A 171 ---------------------------RPYSAPYTATKHAITGLTKSTSLDG-RVHDIACGQIDIGNADTPMAQKMKAGV 222 (272)
T ss_dssp ---------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEEEECC-----------
T ss_pred ---------------------------CCCchHHHHHHHHHHHHHHHHHHHh-CccCEEEEEEEECcccChhhhhhcccc
Confidence 3677899999999999999999999 677999999999999998753211110
Q ss_pred HHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 ~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
. .........++.+|+|+|+.+++|
T Consensus 223 ~----~~~~~~~~~~~~~pedvA~~v~fL 247 (272)
T 4dyv_A 223 P----QADLSIKVEPVMDVAHVASAVVYM 247 (272)
T ss_dssp -----------------CHHHHHHHHHHH
T ss_pred h----hhhhcccccCCCCHHHHHHHHHHH
Confidence 0 011112234567999999988764
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-39 Score=291.92 Aligned_cols=222 Identities=21% Similarity=0.215 Sum_probs=188.0
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEec-ChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r-~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
+.+++|++|||||++|||+++|++|+++|+ +|++++| +.+..++..+++...+.++.++.||++|+++++++++++.+
T Consensus 24 ~~l~~k~vlVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~ 102 (269)
T 4dmm_A 24 LPLTDRIALVTGASRGIGRAIALELAAAGA-KVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIE 102 (269)
T ss_dssp CTTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999996 7877777 66677777777777777899999999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
.+|++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||.++..+
T Consensus 103 ~~g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~~-------- 171 (269)
T 4dmm_A 103 RWGRLDVLVNNAGITRD-TLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQR--SGRIINIASVVGEMG-------- 171 (269)
T ss_dssp HHSCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCHHHHHC--------
T ss_pred HcCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEECchhhcCC--------
Confidence 99999999999999754 6777899999999999999999999999999998765 579999999988753
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~ 320 (350)
.++...|++||++++.+++.++.|+ .++||+||+|+||+|+|++......
T Consensus 172 ---------------------------~~~~~~Y~asK~a~~~l~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~~-- 221 (269)
T 4dmm_A 172 ---------------------------NPGQANYSAAKAGVIGLTKTVAKEL-ASRGITVNAVAPGFIATDMTSELAA-- 221 (269)
T ss_dssp ---------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBTTSCSCHHHH--
T ss_pred ---------------------------CCCchhHHHHHHHHHHHHHHHHHHH-hhhCcEEEEEEECCCcCcccccccH--
Confidence 3577899999999999999999999 6679999999999999997532110
Q ss_pred HHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 ~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..........++.+|+|+|+.++++
T Consensus 222 ----~~~~~~~p~~r~~~~~dvA~~v~~l 246 (269)
T 4dmm_A 222 ----EKLLEVIPLGRYGEAAEVAGVVRFL 246 (269)
T ss_dssp ----HHHGGGCTTSSCBCHHHHHHHHHHH
T ss_pred ----HHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 1111122235678899999887654
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-39 Score=285.55 Aligned_cols=217 Identities=20% Similarity=0.218 Sum_probs=184.5
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCC-CceEEEEccC--CCHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDL--ASLDSVRQFVDTF 158 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~-~~v~~~~~Dv--s~~~~v~~~~~~~ 158 (350)
..+++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++...+ .++.++.+|+ +|.++++++++++
T Consensus 8 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 86 (252)
T 3f1l_A 8 DLLNDRIILVTGASDGIGREAAMTYARYGA-TVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRI 86 (252)
T ss_dssp TTTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHH
Confidence 357899999999999999999999999996 89999999988888877775433 3788999999 9999999999999
Q ss_pred HHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCC
Q 018819 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (350)
Q Consensus 159 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (350)
.+.++++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|+|.+++ .|+||++||..+..+
T Consensus 87 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--~g~iv~isS~~~~~~------ 158 (252)
T 3f1l_A 87 AVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSD--AGSLVFTSSSVGRQG------ 158 (252)
T ss_dssp HHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSS--SCEEEEECCGGGTSC------
T ss_pred HHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCC--CCEEEEECChhhccC------
Confidence 999999999999999865556788999999999999999999999999999998766 579999999988753
Q ss_pred CCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch
Q 018819 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (350)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~ 318 (350)
.++...|++||++++.+++.++.|+ .+. |+||+|+||+|+|++.....
T Consensus 159 -----------------------------~~~~~~Y~asK~a~~~l~~~la~e~-~~~-irvn~v~PG~v~t~~~~~~~- 206 (252)
T 3f1l_A 159 -----------------------------RANWGAYAASKFATEGMMQVLADEY-QQR-LRVNCINPGGTRTAMRASAF- 206 (252)
T ss_dssp -----------------------------CTTCHHHHHHHHHHHHHHHHHHHHT-TTT-CEEEEEECCSBSSHHHHHHC-
T ss_pred -----------------------------CCCCchhHHHHHHHHHHHHHHHHHh-cCC-cEEEEEecCcccCchhhhhC-
Confidence 3577899999999999999999999 554 99999999999998642110
Q ss_pred hhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
+ .....++.+|+|+|+.+++|
T Consensus 207 ~----------~~~~~~~~~p~dva~~~~~L 227 (252)
T 3f1l_A 207 P----------TEDPQKLKTPADIMPLYLWL 227 (252)
T ss_dssp T----------TCCGGGSBCTGGGHHHHHHH
T ss_pred C----------ccchhccCCHHHHHHHHHHH
Confidence 0 00012356888888877654
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-39 Score=283.81 Aligned_cols=209 Identities=19% Similarity=0.211 Sum_probs=175.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
++|++|||||++|||+++|++|+++|+ +|++++|+.+.+++..+++. .++.++.||++|+++++++++++.+.+++
T Consensus 2 s~k~vlVTGas~GIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 77 (235)
T 3l6e_A 2 SLGHIIVTGAGSGLGRALTIGLVERGH-QVSMMGRRYQRLQQQELLLG---NAVIGIVADLAHHEDVDVAFAAAVEWGGL 77 (235)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHG---GGEEEEECCTTSHHHHHHHHHHHHHHHCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhc---CCceEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 578999999999999999999999995 89999999988888877773 36899999999999999999999999999
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
+|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|.+++ |+||++||.++..+
T Consensus 78 id~lvnnAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~---~~iv~isS~~~~~~------------ 141 (235)
T 3l6e_A 78 PELVLHCAGTGE-FGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERG---GVLANVLSSAAQVG------------ 141 (235)
T ss_dssp CSEEEEECCCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC---EEEEEECCEECCSS------------
T ss_pred CcEEEECCCCCC-CCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC---CEEEEEeCHHhcCC------------
Confidence 999999999864 36788899999999999999999999999999998764 59999999988754
Q ss_pred cccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhh
Q 018819 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLL 324 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~ 324 (350)
.++...|++||+++++|+++++.|+ .+.||+||+|+||+|+|++......
T Consensus 142 -----------------------~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~~~~------ 191 (235)
T 3l6e_A 142 -----------------------KANESLYCASKWGMRGFLESLRAEL-KDSPLRLVNLYPSGIRSEFWDNTDH------ 191 (235)
T ss_dssp -----------------------CSSHHHHHHHHHHHHHHHHHHHHHT-TTSSEEEEEEEEEEECCCC------------
T ss_pred -----------------------CCCCcHHHHHHHHHHHHHHHHHHHh-hccCCEEEEEeCCCccCcchhccCC------
Confidence 3678899999999999999999999 6779999999999999987532111
Q ss_pred hhhhHHhhhcCccchhhhhhhcccc
Q 018819 325 FPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 325 ~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
....++.+|||+|+.++++
T Consensus 192 ------~~~~~~~~pedvA~~v~~l 210 (235)
T 3l6e_A 192 ------VDPSGFMTPEDAAAYMLDA 210 (235)
T ss_dssp -----------CBCHHHHHHHHHHH
T ss_pred ------CCCcCCCCHHHHHHHHHHH
Confidence 0112568999999988764
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=295.51 Aligned_cols=227 Identities=20% Similarity=0.179 Sum_probs=182.5
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCC-ceEEEEccCCCHHHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE-NYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~-~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
..+++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++...+. .+.+++||++|+++++++++++.+
T Consensus 29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 107 (281)
T 4dry_A 29 GSGEGRIALVTGGGTGVGRGIAQALSAEGY-SVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRA 107 (281)
T ss_dssp -----CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999999999996 899999999888888777754333 358999999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
.+|++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|.+++...|+||++||+++..+
T Consensus 108 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~-------- 179 (281)
T 4dry_A 108 EFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQTP-------- 179 (281)
T ss_dssp HHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGTCC--------
T ss_pred HcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhCCC--------
Confidence 999999999999986554678889999999999999999999999999999876433479999999988753
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~ 320 (350)
.++...|++||++++.++++++.|+ .++||+||+|+||+|+|++........
T Consensus 180 ---------------------------~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~~~~ 231 (281)
T 4dry_A 180 ---------------------------RPNSAPYTATKHAITGLTKSTALDG-RMHDIACGQIDIGNAATDMTARMSTGV 231 (281)
T ss_dssp ---------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEEECBCC-------CEE
T ss_pred ---------------------------CCCChhHHHHHHHHHHHHHHHHHHh-cccCeEEEEEEECcCcChhhhhhcchh
Confidence 3678899999999999999999999 677999999999999998753211000
Q ss_pred HHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 ~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
. .........++.+|||+|+.+++|
T Consensus 232 ~----~~~~~~~~~~~~~pedvA~~v~fL 256 (281)
T 4dry_A 232 L----QANGEVAAEPTIPIEHIAEAVVYM 256 (281)
T ss_dssp E----CTTSCEEECCCBCHHHHHHHHHHH
T ss_pred h----hhhhcccccCCCCHHHHHHHHHHH
Confidence 0 001111224568999999988764
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-39 Score=289.59 Aligned_cols=225 Identities=17% Similarity=0.172 Sum_probs=180.8
Q ss_pred cCccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHH
Q 018819 79 QGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 158 (350)
Q Consensus 79 ~~~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~ 158 (350)
..++.+++|++|||||++|||+++|++|+++|+ +|++++|+.+.+++..+++ +.++.++.||++|+++++++++++
T Consensus 20 ~~m~~l~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~ 95 (266)
T 3grp_A 20 GSMFKLTGRKALVTGATGGIGEAIARCFHAQGA-IVGLHGTREDKLKEIAADL---GKDVFVFSANLSDRKSIKQLAEVA 95 (266)
T ss_dssp -CTTCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---CSSEEEEECCTTSHHHHHHHHHHH
T ss_pred cchhccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCceEEEEeecCCHHHHHHHHHHH
Confidence 345678999999999999999999999999995 8999999988887776665 457899999999999999999999
Q ss_pred HHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCC
Q 018819 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (350)
Q Consensus 159 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (350)
.+.++++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||.++..+
T Consensus 96 ~~~~g~iD~lvnnAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~Iv~isS~~~~~~------ 166 (266)
T 3grp_A 96 EREMEGIDILVNNAGITRD-GLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRR--YGRIINITSIVGVVG------ 166 (266)
T ss_dssp HHHHTSCCEEEECCCCC------CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCC-----------
T ss_pred HHHcCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcEEEEECCHHHcCC------
Confidence 9999999999999998654 6778889999999999999999999999999998765 479999999988754
Q ss_pred CCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch
Q 018819 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (350)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~ 318 (350)
.++...|++||++++.++++++.|+ .++||+||+|+||+|+|++.....
T Consensus 167 -----------------------------~~~~~~Y~asKaa~~~~~~~la~e~-~~~gI~vn~v~PG~v~t~~~~~~~- 215 (266)
T 3grp_A 167 -----------------------------NPGQTNYCAAKAGLIGFSKALAQEI-ASRNITVNCIAPGFIKSAMTDKLN- 215 (266)
T ss_dssp -------------------------------CHHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSHHHHTCC-
T ss_pred -----------------------------CCCchhHHHHHHHHHHHHHHHHHHh-hhhCcEEEEEeeCcCCCchhhccC-
Confidence 3678899999999999999999999 667999999999999998653211
Q ss_pred hhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
+. ............++.+|+|+|+.+++|
T Consensus 216 ~~--~~~~~~~~~p~~r~~~~edvA~~v~~L 244 (266)
T 3grp_A 216 EK--QKEAIMAMIPMKRMGIGEEIAFATVYL 244 (266)
T ss_dssp HH--HHHHHHTTCTTCSCBCHHHHHHHHHHH
T ss_pred HH--HHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 10 000111112235677899999887754
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-39 Score=287.31 Aligned_cols=222 Identities=18% Similarity=0.217 Sum_probs=186.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|++|||||++|||+++|++|+++|+ +|++++|+.+.+++..+++ +.++.++.+|++|+++++++++++.+.+
T Consensus 5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (255)
T 4eso_A 5 NYQGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEF---GPRVHALRSDIADLNEIAVLGAAAGQTL 80 (255)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCcceEEEccCCCHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999996 9999999988888777766 3578999999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+ +|+||++||.++..+
T Consensus 81 g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~----~g~iv~isS~~~~~~---------- 145 (255)
T 4eso_A 81 GAIDLLHINAGVSEL-EPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIRE----GGSIVFTSSVADEGG---------- 145 (255)
T ss_dssp SSEEEEEECCCCCCC-BCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE----EEEEEEECCGGGSSB----------
T ss_pred CCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhc----CCEEEEECChhhcCC----------
Confidence 999999999999654 67888999999999999999999999999999876 369999999988753
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh-H
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL-F 321 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~-~ 321 (350)
.+++..|++||++++.+++.++.|+ .++||+||+|+||+|+|++......+. .
T Consensus 146 -------------------------~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~~~~~~ 199 (255)
T 4eso_A 146 -------------------------HPGMSVYSASKAALVSFASVLAAEL-LPRGIRVNSVSPGFIDTPTKGVAGITEAE 199 (255)
T ss_dssp -------------------------CTTBHHHHHHHHHHHHHHHHHHHHT-GGGTCEEEEEEECSBCCSSTTCTTSCHHH
T ss_pred -------------------------CCCchHHHHHHHHHHHHHHHHHHHH-hhhCcEEEEEecCcccCcccccccCChhh
Confidence 3678899999999999999999999 677999999999999999753211111 0
Q ss_pred --HhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 322 --RLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 --~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.+...........++.+|||+|+.+++|
T Consensus 200 ~~~~~~~~~~~~p~~r~~~pedvA~~v~~L 229 (255)
T 4eso_A 200 RAEFKTLGDNITPMKRNGTADEVARAVLFL 229 (255)
T ss_dssp HHHHHHHHHHHSTTSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCCcCHHHHHHHHHHH
Confidence 1111111122346678999999988764
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-39 Score=291.77 Aligned_cols=227 Identities=18% Similarity=0.172 Sum_probs=189.6
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+.+++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++...+.++.++.||++|.++++++++++.+.
T Consensus 29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 107 (275)
T 4imr_A 29 FGLRGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAI 107 (275)
T ss_dssp HCCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHh
Confidence 467899999999999999999999999996 8999999988888888888777788999999999999999999999887
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
+++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||..+..+
T Consensus 108 -g~iD~lvnnAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~Iv~isS~~~~~~--------- 174 (275)
T 4imr_A 108 -APVDILVINASAQIN-ATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARK--WGRVVSIGSINQLRP--------- 174 (275)
T ss_dssp -SCCCEEEECCCCCCC-BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTSC---------
T ss_pred -CCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEECCHHhCCC---------
Confidence 899999999998654 6778899999999999999999999999999998765 579999999988742
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.++...|++||++++.+++.++.|+ .+.||+||+|+||+|+|++.........
T Consensus 175 --------------------------~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~~~~~ 227 (275)
T 4imr_A 175 --------------------------KSVVTAYAATKAAQHNLIQSQARDF-AGDNVLLNTLAPGLVDTDRNADRRAQDP 227 (275)
T ss_dssp --------------------------CTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESSBCSHHHHHHHHHCH
T ss_pred --------------------------CCCchhhHHHHHHHHHHHHHHHHHh-cccCcEEEEEEeccccCcccccccccCh
Confidence 2466789999999999999999999 6779999999999999986532111000
Q ss_pred HhhhhhhHHh-hhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQKY-ITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~~~-~~~~~~s~~~~a~~i~~~ 349 (350)
.......... ...++.+|+|+|+.+++|
T Consensus 228 ~~~~~~~~~~~p~~r~~~pedvA~~v~fL 256 (275)
T 4imr_A 228 EGWDEYVRTLNWMGRAGRPEEMVGAALFL 256 (275)
T ss_dssp HHHHHHHHHHSTTCSCBCGGGGHHHHHHH
T ss_pred HHHHHHHhhcCccCCCcCHHHHHHHHHHH
Confidence 1111111112 345678999999988764
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-38 Score=281.47 Aligned_cols=222 Identities=24% Similarity=0.291 Sum_probs=186.5
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|++|||||++|||+++|++|+++|+ +|++++|+.+.+++..+++...+.++.++.||++|+++++++++++.+.+
T Consensus 4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 82 (247)
T 2jah_A 4 ALQGKVALITGASSGIGEATARALAAEGA-AVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEAL 82 (247)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 36789999999999999999999999995 89999999888888877776666789999999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ |+||++||.++..+
T Consensus 83 g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~---g~iv~isS~~~~~~---------- 148 (247)
T 2jah_A 83 GGLDILVNNAGIMLL-GPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK---GTVVQMSSIAGRVN---------- 148 (247)
T ss_dssp SCCSEEEECCCCCCC-CCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCGGGTCC----------
T ss_pred CCCCEEEECCCCCCC-CchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC---CEEEEEccHHhcCC----------
Confidence 999999999998643 6788899999999999999999999999999997653 69999999988753
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.++...|++||++++.++++++.|+ .+.||+||+|+||+|+|++......+..
T Consensus 149 -------------------------~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~~~~~~~- 201 (247)
T 2jah_A 149 -------------------------VRNAAVYQATKFGVNAFSETLRQEV-TERGVRVVVIEPGTTDTELRGHITHTAT- 201 (247)
T ss_dssp -------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBSSSGGGGCCCHHH-
T ss_pred -------------------------CCCCcHHHHHHHHHHHHHHHHHHHh-cccCcEEEEEECCCCCCcchhcccchhh-
Confidence 3567899999999999999999999 6779999999999999987532111110
Q ss_pred hhhhhhHHhhhcCc--cchhhhhhhcccc
Q 018819 323 LLFPPFQKYITKGY--VSEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~~~~~~~~--~s~~~~a~~i~~~ 349 (350)
...+.... .++ .+|+|+|+.++++
T Consensus 202 --~~~~~~~~-~~~~~~~pedvA~~v~~l 227 (247)
T 2jah_A 202 --KEMYEQRI-SQIRKLQAQDIAEAVRYA 227 (247)
T ss_dssp --HHHHHHHT-TTSCCBCHHHHHHHHHHH
T ss_pred --HHHHHhcc-cccCCCCHHHHHHHHHHH
Confidence 01111111 233 8999999988754
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=287.45 Aligned_cols=227 Identities=17% Similarity=0.197 Sum_probs=185.9
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEe-cChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~-r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
..+++|++|||||++|||+++|++|+++|+ +|++++ |+.+..++..+++...+.++.++.||++|+++++++++++.+
T Consensus 14 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 92 (270)
T 3is3_A 14 GRLDGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVA 92 (270)
T ss_dssp TCCTTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCcCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999996 777765 456667777777777778899999999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
+++++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+ +|+||++||..+...
T Consensus 93 ~~g~id~lvnnAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~----~g~iv~isS~~~~~~-------- 159 (270)
T 3is3_A 93 HFGHLDIAVSNSGVVSF-GHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTE----GGRIVLTSSNTSKDF-------- 159 (270)
T ss_dssp HHSCCCEEECCCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCT----TCEEEEECCTTTTTC--------
T ss_pred HcCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhc----CCeEEEEeCchhccC--------
Confidence 99999999999999744 67888999999999999999999999999999976 369999999874321
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccc---
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH--- 317 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~--- 317 (350)
+.++...|++||++++.++++++.|+ .++||+||+|+||+|+|++.....
T Consensus 160 --------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~~~~ 212 (270)
T 3is3_A 160 --------------------------SVPKHSLYSGSKGAVDSFVRIFSKDC-GDKKITVNAVAPGGTVTDMFHEVSHHY 212 (270)
T ss_dssp --------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCSTTHHHHGGGG
T ss_pred --------------------------CCCCCchhHHHHHHHHHHHHHHHHHh-cccCeEEEEEEeCCccChhhhhhhhhc
Confidence 13677899999999999999999999 677999999999999999753210
Q ss_pred hhh------HHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 318 IPL------FRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 318 ~~~------~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.+. ..............++.+|+|+|+.+++|
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~L 250 (270)
T 3is3_A 213 IPNGTSYTAEQRQQMAAHASPLHRNGWPQDVANVVGFL 250 (270)
T ss_dssp STTGGGSCHHHHHHHHHHHSTTCSCBCHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 000 00000111122346678899999988764
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=289.38 Aligned_cols=229 Identities=19% Similarity=0.202 Sum_probs=183.6
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEec-ChhHHHHHHHHhccC-CCceEEEEccCCCHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDTF 158 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r-~~~~~~~~~~~l~~~-~~~v~~~~~Dvs~~~~v~~~~~~~ 158 (350)
++++.+|++|||||++|||+++|++|+++|+ +|++++| +.+..++..+++... +.++.++.||++|+++++++++++
T Consensus 20 ~~~l~~k~~lVTGas~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 98 (281)
T 3v2h_A 20 FQSMMTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMV 98 (281)
T ss_dssp --CCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHH
T ss_pred hhccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 4467899999999999999999999999996 8999998 566677777776543 568999999999999999999999
Q ss_pred HHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCC
Q 018819 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (350)
Q Consensus 159 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (350)
.+.+|++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||.++..+
T Consensus 99 ~~~~g~iD~lv~nAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~~------ 169 (281)
T 3v2h_A 99 ADRFGGADILVNNAGVQFV-EKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKG--WGRIINIASAHGLVA------ 169 (281)
T ss_dssp HHHTSSCSEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTSC------
T ss_pred HHHCCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEECCcccccC------
Confidence 9999999999999998654 6778889999999999999999999999999998765 479999999988753
Q ss_pred CCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch
Q 018819 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (350)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~ 318 (350)
.++...|++||++++.+++.++.|+ .++||+||+|+||+|+|++......
T Consensus 170 -----------------------------~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~t~~~~~~~~ 219 (281)
T 3v2h_A 170 -----------------------------SPFKSAYVAAKHGIMGLTKTVALEV-AESGVTVNSICPGYVLTPLVEKQIP 219 (281)
T ss_dssp -----------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCC--------
T ss_pred -----------------------------CCCchHHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEECCCCcCcchhhhcc
Confidence 3577899999999999999999999 6779999999999999997533211
Q ss_pred hhHHh-h--hh------hhHHhhhcCccchhhhhhhcccc
Q 018819 319 PLFRL-L--FP------PFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ~~~~~-~--~~------~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
...+. . .. ........++.+|+|+|+.+++|
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~edvA~~v~~L 259 (281)
T 3v2h_A 220 DQARTRGITEEQVINEVMLKGQPTKKFITVEQVASLALYL 259 (281)
T ss_dssp --------------------CCTTCSCBCHHHHHHHHHHH
T ss_pred hhhhhcCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH
Confidence 11000 0 00 01112235678999999988754
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=295.03 Aligned_cols=227 Identities=21% Similarity=0.289 Sum_probs=189.5
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCC--cEEEEEecChhHHHHHHHHhccC--CCceEEEEccCCCHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGK--WHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDT 157 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga--~~Vi~~~r~~~~~~~~~~~l~~~--~~~v~~~~~Dvs~~~~v~~~~~~ 157 (350)
..+++|++|||||++|||+++|++|+++|+ .+|++++|+.+.++++.+++... +.++.++.||++|++++++++++
T Consensus 29 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 108 (287)
T 3rku_A 29 ERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIEN 108 (287)
T ss_dssp HHHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHT
T ss_pred hhcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 467899999999999999999999999984 28999999998888888777543 56899999999999999999999
Q ss_pred HHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCC
Q 018819 158 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237 (350)
Q Consensus 158 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~ 237 (350)
+.+.+|++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||+++..+
T Consensus 109 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~IV~isS~~~~~~----- 181 (287)
T 3rku_A 109 LPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKN--SGDIVNLGSIAGRDA----- 181 (287)
T ss_dssp SCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCGGGTSC-----
T ss_pred HHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCeEEEECChhhcCC-----
Confidence 9999999999999999875456788999999999999999999999999999998765 579999999998753
Q ss_pred CCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccc
Q 018819 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317 (350)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~ 317 (350)
.++...|++||++++.|+++++.|+ .++||+||+|+||+|+|++.....
T Consensus 182 ------------------------------~~~~~~Y~asKaa~~~l~~~la~e~-~~~gIrvn~v~PG~v~T~~~~~~~ 230 (287)
T 3rku_A 182 ------------------------------YPTGSIYCASKFAVGAFTDSLRKEL-INTKIRVILIAPGLVETEFSLVRY 230 (287)
T ss_dssp ------------------------------CTTCHHHHHHHHHHHHHHHHHHHHT-TTSSCEEEEEEESCEESSHHHHHT
T ss_pred ------------------------------CCCCchHHHHHHHHHHHHHHHHHHh-hhcCCEEEEEeCCcCcCccccccc
Confidence 3677899999999999999999999 677999999999999998642211
Q ss_pred hhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 318 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..... ............+|+|+|+.++++
T Consensus 231 ~~~~~---~~~~~~~~~~p~~pedvA~~v~~l 259 (287)
T 3rku_A 231 RGNEE---QAKNVYKDTTPLMADDVADLIVYA 259 (287)
T ss_dssp TTCHH---HHHHHHTTSCCEEHHHHHHHHHHH
T ss_pred cCcHH---HHHHhhcccCCCCHHHHHHHHHHH
Confidence 11000 001111123356899999988764
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-38 Score=283.76 Aligned_cols=226 Identities=19% Similarity=0.157 Sum_probs=187.3
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
..+++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++ +.++.+++||++|+++++++++++.++
T Consensus 4 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~ 79 (259)
T 4e6p_A 4 KRLEGKSALITGSARGIGRAFAEAYVREGA-TVAIADIDIERARQAAAEI---GPAAYAVQMDVTRQDSIDAAIAATVEH 79 (259)
T ss_dssp CTTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCCceEEEeeCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999995 8999999988888877776 346889999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
+|++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++. .|+||++||.++..+
T Consensus 80 ~g~id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~--------- 148 (259)
T 4e6p_A 80 AGGLDILVNNAALFDL-APIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGR-GGKIINMASQAGRRG--------- 148 (259)
T ss_dssp SSSCCEEEECCCCCCC-BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-CEEEEEECCGGGTSC---------
T ss_pred cCCCCEEEECCCcCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CeEEEEECChhhccC---------
Confidence 9999999999998654 67788999999999999999999999999999977532 379999999988753
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.++...|++||++++.+++.++.|+ .++||+||+|+||+|+|++.......+.
T Consensus 149 --------------------------~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~~~~ 201 (259)
T 4e6p_A 149 --------------------------EALVAIYCATKAAVISLTQSAGLDL-IKHRINVNAIAPGVVDGEHWDGVDALFA 201 (259)
T ss_dssp --------------------------CTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCSTTHHHHHHHHH
T ss_pred --------------------------CCCChHHHHHHHHHHHHHHHHHHHh-hhcCCEEEEEEECCCccchhhhhhhhhh
Confidence 3577899999999999999999999 6779999999999999997532100000
Q ss_pred --------HhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 322 --------RLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 --------~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.............++.+|+|+|+.+++|
T Consensus 202 ~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~v~~L 237 (259)
T 4e6p_A 202 RYENRPRGEKKRLVGEAVPFGRMGTAEDLTGMAIFL 237 (259)
T ss_dssp HHHTCCTTHHHHHHHHHSTTSSCBCTHHHHHHHHHT
T ss_pred hhccCChHHHHHHHhccCCCCCCcCHHHHHHHHHHH
Confidence 0000011112235678999999988764
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-38 Score=285.04 Aligned_cols=219 Identities=21% Similarity=0.245 Sum_probs=183.4
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
+..+++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++...+.++.++.||++|+++++++++++.+
T Consensus 24 m~~l~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 102 (262)
T 3rkr_A 24 MSSLSGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLA 102 (262)
T ss_dssp -CTTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred hhccCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999999999995 899999999998888888877778899999999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
.++++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||..+..+
T Consensus 103 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~~-------- 172 (262)
T 3rkr_A 103 AHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAK--RGHIINISSLAGKNP-------- 172 (262)
T ss_dssp HHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CCEEEEECSSCSSCC--------
T ss_pred hcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CceEEEEechhhcCC--------
Confidence 9999999999999854456778899999999999999999999999999998765 579999999988753
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~ 320 (350)
.++...|++||++++.++++++.|+ .+.||+|++|+||+|+|++.....
T Consensus 173 ---------------------------~~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~--- 221 (262)
T 3rkr_A 173 ---------------------------VADGAAYTASKWGLNGLMTSAAEEL-RQHQVRVSLVAPGSVRTEFGVGLS--- 221 (262)
T ss_dssp ---------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCC------------
T ss_pred ---------------------------CCCCchHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEecCCCcCCcccccc---
Confidence 3577899999999999999999999 667999999999999998653211
Q ss_pred HHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 ~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
......+..+|+|+|+.++++
T Consensus 222 --------~~~~~~~~~~p~dvA~~v~~l 242 (262)
T 3rkr_A 222 --------AKKSALGAIEPDDIADVVALL 242 (262)
T ss_dssp ---------------CCCHHHHHHHHHHH
T ss_pred --------cccccccCCCHHHHHHHHHHH
Confidence 011123467899999887654
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=284.28 Aligned_cols=223 Identities=20% Similarity=0.205 Sum_probs=186.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEec-ChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r-~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
+.+|++|||||++|||+++|++|+++|+ +|+++++ +.+..++..+++...+.++.+++||++|+++++++++++.+++
T Consensus 2 l~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 80 (246)
T 3osu_A 2 KMTKSALVTGASRGIGRSIALQLAEEGY-NVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQF 80 (246)
T ss_dssp CCSCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4678999999999999999999999996 7777665 5677777777777777889999999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||.++..+
T Consensus 81 g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~~---------- 147 (246)
T 3osu_A 81 GSLDVLVNNAGITRD-NLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQR--SGAIINLSSVVGAVG---------- 147 (246)
T ss_dssp SCCCEEEECCCCCCC-CCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHHHC----------
T ss_pred CCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CCEEEEEcchhhcCC----------
Confidence 999999999998754 6788899999999999999999999999999998765 579999999988753
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.++...|++||++++.+++.++.|+ .++||+||+|+||+|+|++.... .+.
T Consensus 148 -------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~-~~~-- 198 (246)
T 3osu_A 148 -------------------------NPGQANYVATKAGVIGLTKSAAREL-ASRGITVNAVAPGFIVSDMTDAL-SDE-- 198 (246)
T ss_dssp -------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBGGGCCSCS-CHH--
T ss_pred -------------------------CCCChHHHHHHHHHHHHHHHHHHHh-cccCeEEEEEEECCCcCCccccc-CHH--
Confidence 3577899999999999999999999 67799999999999999875321 111
Q ss_pred hhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 323 LLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
............++.+|+|+|+.++++
T Consensus 199 ~~~~~~~~~p~~r~~~~~dva~~v~~l 225 (246)
T 3osu_A 199 LKEQMLTQIPLARFGQDTDIANTVAFL 225 (246)
T ss_dssp HHHHHHTTCTTCSCBCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 111111122235677899999887754
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-38 Score=286.24 Aligned_cols=223 Identities=20% Similarity=0.214 Sum_probs=186.3
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEec-ChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r-~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
+.+++|++|||||++|||+++|++|+++|+ +|+++++ +.+..++..+++...+.++.++.||++|+++++++++++.+
T Consensus 27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 105 (271)
T 3v2g_A 27 ISLAGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVE 105 (271)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999999999996 7777754 55667777777777778899999999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
.+|++|+||||||+... .++.+.+.++|++++++|+.|++++++++.|.|.+ .|+||++||..+..+
T Consensus 106 ~~g~iD~lvnnAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~----~g~iv~isS~~~~~~-------- 172 (271)
T 3v2g_A 106 ALGGLDILVNSAGIWHS-APLEETTVADFDEVMAVNFRAPFVAIRSASRHLGD----GGRIITIGSNLAELV-------- 172 (271)
T ss_dssp HHSCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCT----TCEEEEECCGGGTCC--------
T ss_pred HcCCCcEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhc----CCEEEEEeChhhccC--------
Confidence 99999999999998754 67888999999999999999999999999999865 369999999876542
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~ 320 (350)
+.++...|++||++++.++++++.|+ .++||+||+|+||+|+|++........
T Consensus 173 --------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gIrvn~v~PG~v~T~~~~~~~~~~ 225 (271)
T 3v2g_A 173 --------------------------PWPGISLYSASKAALAGLTKGLARDL-GPRGITVNIVHPGSTDTDMNPADGDHA 225 (271)
T ss_dssp --------------------------CSTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCSSSSCSSCSSH
T ss_pred --------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-hhhCeEEEEEecCCCcCCcccccchhH
Confidence 14678899999999999999999999 677999999999999999764321111
Q ss_pred HHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 ~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..........++.+|||+|+.+++|
T Consensus 226 ----~~~~~~~~~~r~~~pedvA~~v~fL 250 (271)
T 3v2g_A 226 ----EAQRERIATGSYGEPQDIAGLVAWL 250 (271)
T ss_dssp ----HHHHHTCTTSSCBCHHHHHHHHHHH
T ss_pred ----HHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 1111222335678999999988764
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-39 Score=289.19 Aligned_cols=224 Identities=19% Similarity=0.152 Sum_probs=179.2
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEE-ecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMA-CRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~-~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
|.+++|++|||||++|||+++|++|+++|+ +|++. .|+.+..++..+++...+.++.++.||++|+++++++++++.+
T Consensus 23 m~~~~k~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 101 (267)
T 3u5t_A 23 MMETNKVAIVTGASRGIGAAIAARLASDGF-TVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEE 101 (267)
T ss_dssp ----CCEEEEESCSSHHHHHHHHHHHHHTC-EEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999999999996 67665 6677777777777777778899999999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
.++++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+ +|+||++||..+..+
T Consensus 102 ~~g~iD~lvnnAG~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~----~g~iv~isS~~~~~~-------- 168 (267)
T 3u5t_A 102 AFGGVDVLVNNAGIMPL-TTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRV----GGRIINMSTSQVGLL-------- 168 (267)
T ss_dssp HHSCEEEEEECCCCCCC-CCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEE----EEEEEEECCTHHHHC--------
T ss_pred HcCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh----CCeEEEEeChhhccC--------
Confidence 99999999999999654 67888999999999999999999999999999976 369999999887643
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~ 320 (350)
.++...|++||++++.|+++++.|+ .+.||+||+|+||+|+|+++.....+.
T Consensus 169 ---------------------------~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~~~~ 220 (267)
T 3u5t_A 169 ---------------------------HPSYGIYAAAKAGVEAMTHVLSKEL-RGRDITVNAVAPGPTATDLFLEGKSDE 220 (267)
T ss_dssp ---------------------------CTTCHHHHHHHHHHHHHHHHHHHHT-TTSCCEEEEEEECCBC-----------
T ss_pred ---------------------------CCCchHHHHHHHHHHHHHHHHHHHh-hhhCCEEEEEEECCCcCccccccCCHH
Confidence 3577899999999999999999999 677999999999999999763321110
Q ss_pred HHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 ~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
............++.+|+|+|+.+++|
T Consensus 221 --~~~~~~~~~p~~r~~~pedvA~~v~~L 247 (267)
T 3u5t_A 221 --VRDRFAKLAPLERLGTPQDIAGAVAFL 247 (267)
T ss_dssp --CHHHHHTSSTTCSCBCHHHHHHHHHHH
T ss_pred --HHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 000011112235678999999988764
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-39 Score=285.37 Aligned_cols=215 Identities=18% Similarity=0.284 Sum_probs=177.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccC--C-CceEEEEccCCCHHHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--K-ENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~--~-~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
.+++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++... + .++.++.||++|+++++++++++.
T Consensus 4 ~~~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (250)
T 3nyw_A 4 EKQKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIH 82 (250)
T ss_dssp -CCCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHH
Confidence 46789999999999999999999999996 9999999998888877776432 2 578999999999999999999999
Q ss_pred HcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCC
Q 018819 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (350)
+.++++|+||||||+... ..+ +.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||.++..+.
T Consensus 83 ~~~g~iD~lvnnAg~~~~-~~~-~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~~~------ 152 (250)
T 3nyw_A 83 QKYGAVDILVNAAAMFMD-GSL-SEPVDNFRKIMEINVIAQYGILKTVTEIMKVQK--NGYIFNVASRAAKYGF------ 152 (250)
T ss_dssp HHHCCEEEEEECCCCCCC-CCC-SCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECC-------------
T ss_pred HhcCCCCEEEECCCcCCC-CCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CeEEEEEccHHhcCCC------
Confidence 999999999999999754 555 778999999999999999999999999998765 5799999999887531
Q ss_pred CCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchh
Q 018819 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (350)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~ 319 (350)
++...|++||++++.++++++.|+ .+.||+||+|+||+|+|++......+
T Consensus 153 -----------------------------~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~~~ 202 (250)
T 3nyw_A 153 -----------------------------ADGGIYGSTKFALLGLAESLYREL-APLGIRVTTLCPGWVNTDMAKKAGTP 202 (250)
T ss_dssp -----------------------------CCTTHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESSBCSHHHHHTTCC
T ss_pred -----------------------------CCCcchHHHHHHHHHHHHHHHHHh-hhcCcEEEEEecCcccCchhhhcCCC
Confidence 347799999999999999999999 67799999999999999864221100
Q ss_pred hHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
....++.+|+|+|+.++++
T Consensus 203 -----------~~~~~~~~p~dva~~v~~l 221 (250)
T 3nyw_A 203 -----------FKDEEMIQPDDLLNTIRCL 221 (250)
T ss_dssp -----------SCGGGSBCHHHHHHHHHHH
T ss_pred -----------cccccCCCHHHHHHHHHHH
Confidence 1113467899998887654
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-38 Score=281.71 Aligned_cols=224 Identities=19% Similarity=0.234 Sum_probs=190.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
++++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++...+.++.++.||++|+++++++++++.+.+
T Consensus 2 ~l~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (247)
T 3lyl_A 2 SLNEKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAEN 80 (247)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 56899999999999999999999999995 99999999988888888887777889999999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|+||||||+... .++.+.+.++|++.+++|+.+++++++.++|.|.+++ .|+||++||..+..+
T Consensus 81 ~~id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~~---------- 147 (247)
T 3lyl_A 81 LAIDILVNNAGITRD-NLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKR--WGRIISIGSVVGSAG---------- 147 (247)
T ss_dssp CCCSEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCTHHHHC----------
T ss_pred CCCCEEEECCCCCCC-CchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CeEEEEEcchhhccC----------
Confidence 999999999998754 6777889999999999999999999999999998765 479999999987753
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.++...|++||++++.++++++.|+ .++||++++|+||+|+|++..........
T Consensus 148 -------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 201 (247)
T 3lyl_A 148 -------------------------NPGQTNYCAAKAGVIGFSKSLAYEV-ASRNITVNVVAPGFIATDMTDKLTDEQKS 201 (247)
T ss_dssp -------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCTTTTTSCHHHHH
T ss_pred -------------------------CCCcHHHHHHHHHHHHHHHHHHHHH-HHcCeEEEEEeeCcEecccchhccHHHHH
Confidence 3577899999999999999999999 66799999999999999875332111111
Q ss_pred hhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 323 LLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.........++.+|+|+|+.++++
T Consensus 202 ---~~~~~~~~~~~~~~~dva~~i~~l 225 (247)
T 3lyl_A 202 ---FIATKIPSGQIGEPKDIAAAVAFL 225 (247)
T ss_dssp ---HHHTTSTTCCCBCHHHHHHHHHHH
T ss_pred ---HHhhcCCCCCCcCHHHHHHHHHHH
Confidence 011112235578999999987653
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-38 Score=282.91 Aligned_cols=228 Identities=21% Similarity=0.225 Sum_probs=184.9
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+.+++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++...+.++.++.||++|+++++++++++.+.
T Consensus 17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 95 (273)
T 1ae1_A 17 WSLKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHV 95 (273)
T ss_dssp CCCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 457899999999999999999999999995 8999999988888777777666678999999999999999999999999
Q ss_pred C-CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 162 G-RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 162 ~-g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
+ +++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||.++..+
T Consensus 96 ~~g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--~g~iv~isS~~~~~~-------- 164 (273)
T 1ae1_A 96 FDGKLNILVNNAGVVIH-KEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQ--NGNVIFLSSIAGFSA-------- 164 (273)
T ss_dssp TTSCCCEEEECCCCCCC-CCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--SEEEEEECCGGGTSC--------
T ss_pred cCCCCcEEEECCCCCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEcCHhhcCC--------
Confidence 8 899999999998644 6778899999999999999999999999999997754 479999999988743
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch--
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-- 318 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~-- 318 (350)
.++...|++||++++.+++.++.|+ .+.||+||+|+||+|+|++......
T Consensus 165 ---------------------------~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~ 216 (273)
T 1ae1_A 165 ---------------------------LPSVSLYSASKGAINQMTKSLACEW-AKDNIRVNSVAPGVILTPLVETAIKKN 216 (273)
T ss_dssp ---------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBC-----------
T ss_pred ---------------------------CCCcchhHHHHHHHHHHHHHHHHHH-hhcCcEEEEEEeCCCcCchhhhhhhcc
Confidence 3567899999999999999999999 6679999999999999997532111
Q ss_pred h-hHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 319 P-LFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ~-~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
+ ...............++.+|+|+|+.++++
T Consensus 217 ~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l 248 (273)
T 1ae1_A 217 PHQKEEIDNFIVKTPMGRAGKPQEVSALIAFL 248 (273)
T ss_dssp --CHHHHHHHHHHSTTCSCBCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 0 000001111112235578999999988654
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-38 Score=284.56 Aligned_cols=226 Identities=19% Similarity=0.214 Sum_probs=185.0
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
++.+++|++|||||++|||+++|++|+++|+ +|++++|+ +..++..+++...+.++.++.||++|.++++++.+.+ +
T Consensus 26 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~-~ 102 (273)
T 3uf0_A 26 PFSLAGRTAVVTGAGSGIGRAIAHGYARAGA-HVLAWGRT-DGVKEVADEIADGGGSAEAVVADLADLEGAANVAEEL-A 102 (273)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS-THHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHH-H
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCH-HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHH-H
Confidence 3568999999999999999999999999996 88888876 4556666777667778999999999999999995554 4
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
.++++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||..+..+
T Consensus 103 ~~g~iD~lv~nAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~IV~isS~~~~~~-------- 171 (273)
T 3uf0_A 103 ATRRVDVLVNNAGIIAR-APAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHG--SGRIVTIASMLSFQG-------- 171 (273)
T ss_dssp HHSCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTSC--------
T ss_pred hcCCCcEEEECCCCCCC-CCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCEEEEEcchHhcCC--------
Confidence 56899999999999754 6788899999999999999999999999999998765 579999999988753
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~ 320 (350)
.++...|++||++++.+++.++.|+ .+.||+||+|+||+|+|++.......
T Consensus 172 ---------------------------~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~~~- 222 (273)
T 3uf0_A 172 ---------------------------GRNVAAYAASKHAVVGLTRALASEW-AGRGVGVNALAPGYVVTANTAALRAD- 222 (273)
T ss_dssp ---------------------------CSSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSGGGHHHHTS-
T ss_pred ---------------------------CCCChhHHHHHHHHHHHHHHHHHHH-hhcCcEEEEEEeCCCcCCchhhcccC-
Confidence 3577899999999999999999999 67799999999999999875321111
Q ss_pred HHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 ~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..............++.+|+|+|+.++++
T Consensus 223 ~~~~~~~~~~~p~~r~~~pedva~~v~~L 251 (273)
T 3uf0_A 223 DERAAEITARIPAGRWATPEDMVGPAVFL 251 (273)
T ss_dssp HHHHHHHHHHSTTSSCBCGGGGHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 11111112223346678999999988764
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-38 Score=282.80 Aligned_cols=228 Identities=20% Similarity=0.257 Sum_probs=186.1
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHh-ccCCCceEEEEccCCCHHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA-GMAKENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l-~~~~~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
...+++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++ ...+.++.++.||++|+++++++++++.
T Consensus 16 ~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 94 (267)
T 1vl8_A 16 VFDLRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVK 94 (267)
T ss_dssp -CCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 3467899999999999999999999999995 8999999988777776666 3345678899999999999999999999
Q ss_pred HcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccC-CCCCCCCCCC
Q 018819 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT-GNTNTLAGNV 238 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~-~~~~~~~~~~ 238 (350)
+.++++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||.+ +..+
T Consensus 95 ~~~g~iD~lvnnAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~~~~~~------ 165 (267)
T 1vl8_A 95 EKFGKLDTVVNAAGINRR-HPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESD--NPSIINIGSLTVEEVT------ 165 (267)
T ss_dssp HHHSCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCS--SCEEEEECCGGGTCCC------
T ss_pred HHcCCCCEEEECCCcCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CcEEEEECCcchhccC------
Confidence 999999999999998643 6677889999999999999999999999999998765 47999999988 6542
Q ss_pred CCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch
Q 018819 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (350)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~ 318 (350)
.++...|++||++++.+++.++.|+ .+.||+||+|+||+|+|++......
T Consensus 166 -----------------------------~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~~~~ 215 (267)
T 1vl8_A 166 -----------------------------MPNISAYAASKGGVASLTKALAKEW-GRYGIRVNVIAPGWYRTKMTEAVFS 215 (267)
T ss_dssp -----------------------------SSSCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBCSTTTHHHHT
T ss_pred -----------------------------CCCChhHHHHHHHHHHHHHHHHHHh-cccCeEEEEEEeccCcccccccccc
Confidence 3567899999999999999999999 6679999999999999987532100
Q ss_pred hhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
. ..............++.+|+|+|+.++++
T Consensus 216 ~-~~~~~~~~~~~p~~~~~~p~dvA~~v~~l 245 (267)
T 1vl8_A 216 D-PEKLDYMLKRIPLGRTGVPEDLKGVAVFL 245 (267)
T ss_dssp C-HHHHHHHHHTCTTSSCBCGGGGHHHHHHH
T ss_pred C-hHHHHHHHhhCCCCCCcCHHHHHHHHHHH
Confidence 0 00000001111235578999999988754
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=290.34 Aligned_cols=219 Identities=20% Similarity=0.195 Sum_probs=184.2
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChh-------HHHHHHHHhccCCCceEEEEccCCCHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL-------KAERAAKSAGMAKENYTIMHLDLASLDSVRQF 154 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~-------~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~ 154 (350)
|.+++|++|||||++|||+++|++|+++|+ +|++++|+.+ .+++..+++...+.++.+++||++|+++++++
T Consensus 5 m~l~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~ 83 (285)
T 3sc4_A 5 MSLRGKTMFISGGSRGIGLAIAKRVAADGA-NVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAA 83 (285)
T ss_dssp -CCTTCEEEEESCSSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHH
Confidence 467899999999999999999999999996 9999999865 45666666666677899999999999999999
Q ss_pred HHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCC
Q 018819 155 VDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTL 234 (350)
Q Consensus 155 ~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~ 234 (350)
++++.+.++++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|++++ .|+||++||..+..+.
T Consensus 84 ~~~~~~~~g~id~lvnnAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~~~~~~- 159 (285)
T 3sc4_A 84 VAKTVEQFGGIDICVNNASAINL-GSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRD--NPHILTLSPPIRLEPK- 159 (285)
T ss_dssp HHHHHHHHSCCSEEEECCCCCCC-CCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSS--SCEEEECCCCCCCSGG-
T ss_pred HHHHHHHcCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEECChhhccCC-
Confidence 99999999999999999999754 6788999999999999999999999999999998765 5799999999887531
Q ss_pred CCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCC-cccCCcc
Q 018819 235 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPG-CIATTGL 313 (350)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG-~v~t~~~ 313 (350)
+++...|++||++++.++++++.|+ .++||+||+|+|| .++|++.
T Consensus 160 ---------------------------------~~~~~~Y~asKaal~~~~~~la~e~-~~~gI~vn~v~PG~~v~t~~~ 205 (285)
T 3sc4_A 160 ---------------------------------WLRPTPYMMAKYGMTLCALGIAEEL-RDAGIASNTLWPRTTVATAAV 205 (285)
T ss_dssp ---------------------------------GSCSHHHHHHHHHHHHHHHHHHHHT-GGGTCEEEEEECSSCBCCHHH
T ss_pred ---------------------------------CCCCchHHHHHHHHHHHHHHHHHHh-cccCcEEEEEeCCCccccHHH
Confidence 2466899999999999999999999 6779999999999 6888754
Q ss_pred cccchhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 314 FREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..... ......++.+|||+|+.++++
T Consensus 206 ~~~~~----------~~~~~~r~~~pedvA~~~~~l 231 (285)
T 3sc4_A 206 QNLLG----------GDEAMARSRKPEVYADAAYVV 231 (285)
T ss_dssp HHHHT----------SCCCCTTCBCTHHHHHHHHHH
T ss_pred Hhhcc----------ccccccCCCCHHHHHHHHHHH
Confidence 21100 001124567899998887654
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-38 Score=288.55 Aligned_cols=225 Identities=21% Similarity=0.201 Sum_probs=185.6
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhH-HHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK-AERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~-~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
.++++|++|||||++|||+++|++|+++|+ +|++++|+.+. .+...+.+...+.++.++.||++|+++++++++++.+
T Consensus 43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 121 (291)
T 3ijr_A 43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVR 121 (291)
T ss_dssp STTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999999999996 89999988653 4455555666677899999999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
+++++|+||||||+......+.+.+.++|++++++|+.|+++++++++|+|.+ +|+||++||..+..+
T Consensus 122 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~----~g~iv~isS~~~~~~-------- 189 (291)
T 3ijr_A 122 QLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQ----GDVIINTASIVAYEG-------- 189 (291)
T ss_dssp HHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCT----TCEEEEECCTHHHHC--------
T ss_pred HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhh----CCEEEEEechHhcCC--------
Confidence 99999999999998755567788899999999999999999999999999865 369999999988753
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~ 320 (350)
.++...|++||++++.+++.++.|+ .++||+||+|+||+|+|++......+.
T Consensus 190 ---------------------------~~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~~~~ 241 (291)
T 3ijr_A 190 ---------------------------NETLIDYSATKGAIVAFTRSLSQSL-VQKGIRVNGVAPGPIWTPLIPSSFDEK 241 (291)
T ss_dssp ---------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCSTHHHHHSCHH
T ss_pred ---------------------------CCCChhHHHHHHHHHHHHHHHHHHH-hhcCEEEEEEeeCCCcCCcccccCCHH
Confidence 3567899999999999999999999 667999999999999999753211110
Q ss_pred HHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 ~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
............++.+|+|+|+.+++|
T Consensus 242 --~~~~~~~~~p~~r~~~p~dvA~~v~~L 268 (291)
T 3ijr_A 242 --KVSQFGSNVPMQRPGQPYELAPAYVYL 268 (291)
T ss_dssp --HHHHTTTTSTTSSCBCGGGTHHHHHHH
T ss_pred --HHHHHHccCCCCCCcCHHHHHHHHHHH
Confidence 000111112235677999999988764
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-38 Score=290.92 Aligned_cols=194 Identities=21% Similarity=0.227 Sum_probs=173.0
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC------------hhHHHHHHHHhccCCCceEEEEccCCCH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD------------FLKAERAAKSAGMAKENYTIMHLDLASL 148 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~------------~~~~~~~~~~l~~~~~~v~~~~~Dvs~~ 148 (350)
+..+++|++|||||++|||+++|+.|+++|+ +|++++|+ .+.+++..+++...+.++.++.||++|+
T Consensus 41 m~~l~gk~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~ 119 (317)
T 3oec_A 41 MNRLQGKVAFITGAARGQGRTHAVRLAQDGA-DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDL 119 (317)
T ss_dssp -CTTTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred hhccCCCEEEEeCCCcHHHHHHHHHHHHCCC-eEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCH
Confidence 4468899999999999999999999999996 88888775 5666777777766778899999999999
Q ss_pred HHHHHHHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccC
Q 018819 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (350)
Q Consensus 149 ~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~ 228 (350)
++++++++++.+.+|++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++. +|+||++||..
T Consensus 120 ~~v~~~~~~~~~~~g~iD~lVnnAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-~g~Iv~isS~~ 197 (317)
T 3oec_A 120 ASLQAVVDEALAEFGHIDILVSNVGISNQ-GEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQ-GGSVIFVSSTV 197 (317)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCC-BCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCS-CEEEEEECCGG
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-CCEEEEECcHH
Confidence 99999999999999999999999998754 67888999999999999999999999999999987642 47999999998
Q ss_pred CCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcc
Q 018819 229 GNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI 308 (350)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v 308 (350)
+..+ .++...|++||++++.|+++++.|+ .+.||+||+|+||+|
T Consensus 198 ~~~~-----------------------------------~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v 241 (317)
T 3oec_A 198 GLRG-----------------------------------APGQSHYAASKHGVQGLMLSLANEV-GRHNIRVNSVNPGAV 241 (317)
T ss_dssp GSSC-----------------------------------CTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSB
T ss_pred hcCC-----------------------------------CCCCcchHHHHHHHHHHHHHHHHHH-hhcCeEEEEEecCcc
Confidence 8753 3678899999999999999999999 677999999999999
Q ss_pred cCCcc
Q 018819 309 ATTGL 313 (350)
Q Consensus 309 ~t~~~ 313 (350)
+|++.
T Consensus 242 ~T~~~ 246 (317)
T 3oec_A 242 NTEMA 246 (317)
T ss_dssp SSHHH
T ss_pred cCccc
Confidence 99875
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-38 Score=284.54 Aligned_cols=225 Identities=17% Similarity=0.154 Sum_probs=180.1
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEE-ecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMA-CRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~-~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
+.+++|++|||||++|||+++|++|+++|+ +|+++ .|+.+..++..+++...+.++.++.||++|+++++++++++.+
T Consensus 4 ~~l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (259)
T 3edm_A 4 QRFTNRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAAD 82 (259)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999999996 77776 6677777777788877778899999999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
++|++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|.+ .|+||++||.++...
T Consensus 83 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~----~g~iv~isS~~~~~~-------- 150 (259)
T 3edm_A 83 KFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAK----GGAIVTFSSQAGRDG-------- 150 (259)
T ss_dssp HHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE----EEEEEEECCHHHHHC--------
T ss_pred HhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCEEEEEcCHHhccC--------
Confidence 99999999999998745578889999999999999999999999999999976 369999999987621
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~ 320 (350)
+.++...|++||++++.++++++.|+ .+. |+||+|+||+|+|++......+.
T Consensus 151 --------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~-I~vn~v~PG~v~T~~~~~~~~~~ 202 (259)
T 3edm_A 151 --------------------------GGPGALAYATSKGAVMTFTRGLAKEV-GPK-IRVNAVCPGMISTTFHDTFTKPE 202 (259)
T ss_dssp --------------------------CSTTCHHHHHHHHHHHHHHHHHHHHH-TTT-CEEEEEEECCBCC----------
T ss_pred --------------------------CCCCcHHHHHHHHHHHHHHHHHHHHH-CCC-CEEEEEEECCCcCcccccccChH
Confidence 13577899999999999999999999 554 99999999999998753211111
Q ss_pred HHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 ~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
............++.+|+|+|+.+++|
T Consensus 203 --~~~~~~~~~p~~r~~~pedva~~v~~L 229 (259)
T 3edm_A 203 --VRERVAGATSLKREGSSEDVAGLVAFL 229 (259)
T ss_dssp --------------CCBCHHHHHHHHHHH
T ss_pred --HHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 001111122235677999999988754
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-38 Score=283.95 Aligned_cols=229 Identities=21% Similarity=0.204 Sum_probs=186.1
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccC--CCceEEEEccCCCHHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~--~~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
+.+++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++... +.++.++.||++|+++++++++++.
T Consensus 9 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 87 (267)
T 1iy8_A 9 TRFTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATT 87 (267)
T ss_dssp -CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 357899999999999999999999999995 8999999988877776666443 5678999999999999999999999
Q ss_pred HcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCC
Q 018819 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (350)
+.++++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||..+..+
T Consensus 88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~~------- 158 (267)
T 1iy8_A 88 ERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG--SGMVVNTASVGGIRG------- 158 (267)
T ss_dssp HHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCGGGTSB-------
T ss_pred HHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CCEEEEEcchhhccC-------
Confidence 99999999999999864325677889999999999999999999999999998764 479999999988753
Q ss_pred CCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccccc--c
Q 018819 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE--H 317 (350)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~--~ 317 (350)
.++...|++||++++.+++.++.|+ .+.||+||+|+||+|+|++.... .
T Consensus 159 ----------------------------~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~ 209 (267)
T 1iy8_A 159 ----------------------------IGNQSGYAAAKHGVVGLTRNSAVEY-GRYGIRINAIAPGAIWTPMVENSMKQ 209 (267)
T ss_dssp ----------------------------CSSBHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCSHHHHHHHHH
T ss_pred ----------------------------CCCCccHHHHHHHHHHHHHHHHHHH-HhcCeEEEEEEeCCCcCcchhccccc
Confidence 3567899999999999999999999 56799999999999999864321 0
Q ss_pred -hhh-HHhhhhhhH-HhhhcCccchhhhhhhcccc
Q 018819 318 -IPL-FRLLFPPFQ-KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 318 -~~~-~~~~~~~~~-~~~~~~~~s~~~~a~~i~~~ 349 (350)
.+. .......+. .....++.+|+|+|+.++++
T Consensus 210 ~~~~~~~~~~~~~~~~~p~~r~~~~~dvA~~v~~l 244 (267)
T 1iy8_A 210 LDPENPRKAAEEFIQVNPSKRYGEAPEIAAVVAFL 244 (267)
T ss_dssp HCTTCHHHHHHHHHTTCTTCSCBCHHHHHHHHHHH
T ss_pred cChhhhhhHHHHHhccCCCCCCcCHHHHHHHHHHH
Confidence 010 000000111 11234577999999988754
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-38 Score=286.90 Aligned_cols=228 Identities=23% Similarity=0.218 Sum_probs=175.9
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEec-ChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r-~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
..+++|++|||||++|||+++|++|+++|+ +|++++| +.+..++..+++...+.++.+++||++|+++++++++++.+
T Consensus 25 ~~~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 103 (280)
T 4da9_A 25 TQKARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVA 103 (280)
T ss_dssp SCCCCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHH
T ss_pred hccCCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 357899999999999999999999999996 8888875 77777778788777778899999999999999999999999
Q ss_pred cCCCCcEEEEccccCC-CCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCC-CCCeEEEEeccCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY-PSKRLIIVGSITGNTNTLAGNV 238 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~-~~g~iV~vSS~~~~~~~~~~~~ 238 (350)
.++++|+||||||+.. ...++.+.+.++|++++++|+.|+++++++++|.|.+++. ..|+||++||.++..+
T Consensus 104 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~------ 177 (280)
T 4da9_A 104 EFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVMT------ 177 (280)
T ss_dssp HHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-----------
T ss_pred HcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhccC------
Confidence 9999999999999842 3367778899999999999999999999999999976431 1479999999988753
Q ss_pred CCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch
Q 018819 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (350)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~ 318 (350)
.++...|++||++++.+++.++.|+ .+.||+||+|+||+|+|++......
T Consensus 178 -----------------------------~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~~ 227 (280)
T 4da9_A 178 -----------------------------SPERLDYCMSKAGLAAFSQGLALRL-AETGIAVFEVRPGIIRSDMTAAVSG 227 (280)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHHHHHHHHH-TTTTEEEEEEEECCBCC--------
T ss_pred -----------------------------CCCccHHHHHHHHHHHHHHHHHHHH-HHhCcEEEEEeecCCcCCchhhcch
Confidence 3577899999999999999999999 6779999999999999987532111
Q ss_pred hhHHhhhhhhH-HhhhcCccchhhhhhhcccc
Q 018819 319 PLFRLLFPPFQ-KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ~~~~~~~~~~~-~~~~~~~~s~~~~a~~i~~~ 349 (350)
.... .... .....++.+|+|+|+.+++|
T Consensus 228 ~~~~---~~~~~~~p~~r~~~pedvA~~v~~L 256 (280)
T 4da9_A 228 KYDG---LIESGLVPMRRWGEPEDIGNIVAGL 256 (280)
T ss_dssp -----------------CCBCHHHHHHHHHHH
T ss_pred hHHH---HHhhcCCCcCCcCCHHHHHHHHHHH
Confidence 1000 0011 12235677999999988754
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=287.31 Aligned_cols=218 Identities=22% Similarity=0.264 Sum_probs=180.3
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhH-------HHHHHHHhccCCCceEEEEccCCCHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK-------AERAAKSAGMAKENYTIMHLDLASLDSVRQF 154 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~-------~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~ 154 (350)
+++++|++|||||++|||+++|++|+++|+ +|++++|+.+. +++..+++...+.++.+++||++|+++++++
T Consensus 2 ~~l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~ 80 (274)
T 3e03_A 2 LTLSGKTLFITGASRGIGLAIALRAARDGA-NVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAA 80 (274)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHH
T ss_pred CCCCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHH
Confidence 467899999999999999999999999996 89999998643 5556666666677899999999999999999
Q ss_pred HHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCC
Q 018819 155 VDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTL 234 (350)
Q Consensus 155 ~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~ 234 (350)
++++.+++|++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||..+..+.
T Consensus 81 ~~~~~~~~g~iD~lvnnAG~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~~~~~~- 156 (274)
T 3e03_A 81 VAATVDTFGGIDILVNNASAIWL-RGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAP--NPHILTLAPPPSLNPA- 156 (274)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCC-CCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSS--SCEEEECCCCCCCCHH-
T ss_pred HHHHHHHcCCCCEEEECCCcccC-CCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcC--CceEEEECChHhcCCC-
Confidence 99999999999999999999754 6777899999999999999999999999999998775 5799999999887420
Q ss_pred CCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCC-cccCCcc
Q 018819 235 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPG-CIATTGL 313 (350)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG-~v~t~~~ 313 (350)
.+++...|++||++++.++++++.|+ .++||+||+|+|| +++|++.
T Consensus 157 --------------------------------~~~~~~~Y~asKaal~~l~~~la~e~-~~~gI~vn~v~PG~~v~T~~~ 203 (274)
T 3e03_A 157 --------------------------------WWGAHTGYTLAKMGMSLVTLGLAAEF-GPQGVAINALWPRTVIATDAI 203 (274)
T ss_dssp --------------------------------HHHHCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEECSBCBCC---
T ss_pred --------------------------------CCCCCchHHHHHHHHHHHHHHHHHHh-hhcCEEEEEEECCcccccchh
Confidence 02467789999999999999999999 6779999999999 6899865
Q ss_pred cccchhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 314 FREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.. .+ ..+ ..++.+|||+|+.++++
T Consensus 204 ~~--~~-----~~~-----~~~~~~pedvA~~v~~l 227 (274)
T 3e03_A 204 NM--LP-----GVD-----AAACRRPEIMADAAHAV 227 (274)
T ss_dssp -----------CCC-----GGGSBCTHHHHHHHHHH
T ss_pred hh--cc-----ccc-----ccccCCHHHHHHHHHHH
Confidence 11 11 000 12256899998887654
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=280.13 Aligned_cols=228 Identities=19% Similarity=0.204 Sum_probs=187.5
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+.+++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++...+.++.++.||++|+++++++++++.+.
T Consensus 5 ~~l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (260)
T 2ae2_A 5 WNLEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANH 83 (260)
T ss_dssp TCCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 457899999999999999999999999995 8999999988888777777655678899999999999999999999999
Q ss_pred C-CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 162 G-RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 162 ~-g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
+ +++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||..+..+
T Consensus 84 ~~g~id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~~-------- 152 (260)
T 2ae2_A 84 FHGKLNILVNNAGIVIY-KEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASE--RGNVVFISSVSGALA-------- 152 (260)
T ss_dssp TTTCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTS--SEEEEEECCGGGTSC--------
T ss_pred cCCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEcchhhccC--------
Confidence 8 899999999998643 5677889999999999999999999999999998765 479999999987643
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch-h
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-P 319 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~-~ 319 (350)
.++...|++||++++.+++.++.|+ .+.||+||+|+||+++|++...... +
T Consensus 153 ---------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~ 204 (260)
T 2ae2_A 153 ---------------------------VPYEAVYGATKGAMDQLTRCLAFEW-AKDNIRVNGVGPGVIATSLVEMTIQDP 204 (260)
T ss_dssp ---------------------------CTTCHHHHHHHHHHHHHHHHHHHHT-GGGTEEEEEEEECSBCSHHHHHHTTSH
T ss_pred ---------------------------CCCcchHHHHHHHHHHHHHHHHHHH-hhcCcEEEEEecCCCCCcchhhhccCh
Confidence 3567899999999999999999999 6679999999999999986422100 1
Q ss_pred -hHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 320 -LFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 320 -~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
...............++.+|+|+|+.++++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~dvA~~v~~l 235 (260)
T 2ae2_A 205 EQKENLNKLIDRCALRRMGEPKELAAMVAFL 235 (260)
T ss_dssp HHHHHHHHHHHTSTTCSCBCHHHHHHHHHHH
T ss_pred hhHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 000000011111234578999999987653
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-38 Score=282.96 Aligned_cols=220 Identities=20% Similarity=0.250 Sum_probs=181.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+.+|++|||||++|||+++|+.|+++|+ +|++++|+.+.+++. . ..++.++.+|++|.++++++++++.+.+
T Consensus 13 ~~~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~----~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 85 (266)
T 3p19_A 13 GSMKKLVVITGASSGIGEAIARRFSEEGH-PLLLLARRVERLKAL----N--LPNTLCAQVDVTDKYTFDTAITRAEKIY 85 (266)
T ss_dssp --CCCEEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHTT----C--CTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHh----h--cCCceEEEecCCCHHHHHHHHHHHHHHC
Confidence 46789999999999999999999999995 899999987655432 1 2368899999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
|++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||.++..+
T Consensus 86 g~iD~lvnnAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~--~g~IV~isS~~~~~~---------- 152 (266)
T 3p19_A 86 GPADAIVNNAGMMLL-GQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARN--CGTIINISSIAGKKT---------- 152 (266)
T ss_dssp CSEEEEEECCCCCCC-CCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCGGGTSC----------
T ss_pred CCCCEEEECCCcCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEEcChhhCCC----------
Confidence 999999999999754 6788899999999999999999999999999998765 579999999988753
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.++...|++||++++.++++++.|+ .+.||+||+|+||+|+|++..........
T Consensus 153 -------------------------~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~~~~~~ 206 (266)
T 3p19_A 153 -------------------------FPDHAAYCGTKFAVHAISENVREEV-AASNVRVMTIAPSAVKTELLSHTTSQQIK 206 (266)
T ss_dssp -------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBSSSGGGGCSCHHHH
T ss_pred -------------------------CCCCchHHHHHHHHHHHHHHHHHHh-cccCcEEEEEeeCccccchhhcccchhhh
Confidence 3677899999999999999999999 67799999999999999976432211111
Q ss_pred hhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 323 LLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
... ........++.+|+|+|+.++++
T Consensus 207 ~~~-~~~~~~~~r~~~pedvA~av~~l 232 (266)
T 3p19_A 207 DGY-DAWRVDMGGVLAADDVARAVLFA 232 (266)
T ss_dssp HHH-HHHHHHTTCCBCHHHHHHHHHHH
T ss_pred HHH-HhhcccccCCCCHHHHHHHHHHH
Confidence 000 00112345678999999988764
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-38 Score=288.33 Aligned_cols=227 Identities=19% Similarity=0.163 Sum_probs=185.9
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC--hhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD--FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 158 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~--~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~ 158 (350)
++.+++|++|||||++|||+++|++|+++|+ +|++++|+ ....++..+.++..+.++.++.||++|+++++++++++
T Consensus 44 ~~~l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 122 (294)
T 3r3s_A 44 SGRLKDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKA 122 (294)
T ss_dssp CSTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 3568999999999999999999999999996 88888886 34455566666666778999999999999999999999
Q ss_pred HHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCC
Q 018819 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (350)
Q Consensus 159 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (350)
.+.++++|+||||||+......+.+.+.++|++++++|+.|+++++++++|.|.+ +|+||++||..+..+
T Consensus 123 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~----~g~Iv~isS~~~~~~------ 192 (294)
T 3r3s_A 123 REALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPK----GASIITTSSIQAYQP------ 192 (294)
T ss_dssp HHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCT----TCEEEEECCGGGTSC------
T ss_pred HHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhc----CCEEEEECChhhccC------
Confidence 9999999999999998654467788999999999999999999999999998865 369999999988753
Q ss_pred CCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch
Q 018819 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (350)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~ 318 (350)
.++...|++||++++.+++.++.|+ .++||+||+|+||+|+|++......
T Consensus 193 -----------------------------~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~t~~~~~~~~ 242 (294)
T 3r3s_A 193 -----------------------------SPHLLDYAATKAAILNYSRGLAKQV-AEKGIRVNIVAPGPIWTALQISGGQ 242 (294)
T ss_dssp -----------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCSHHHHTTTS
T ss_pred -----------------------------CCCchHHHHHHHHHHHHHHHHHHHH-hhcCeEEEEEecCcCccccccccCC
Confidence 3677899999999999999999999 6779999999999999986322111
Q ss_pred hhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.. .............++.+|+|+|+.+++|
T Consensus 243 ~~-~~~~~~~~~~p~~r~~~p~dvA~~v~~L 272 (294)
T 3r3s_A 243 TQ-DKIPQFGQQTPMKRAGQPAELAPVYVYL 272 (294)
T ss_dssp CG-GGSTTTTTTSTTSSCBCGGGGHHHHHHH
T ss_pred CH-HHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 10 0001111122235678999999988764
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-38 Score=282.97 Aligned_cols=228 Identities=19% Similarity=0.197 Sum_probs=188.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++...+.++.++.||++|+++++++++++.+.+
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (262)
T 1zem_A 4 KFNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDF 82 (262)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 46889999999999999999999999995 89999999888888877777667789999999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|+||||||+.....++.+.+.++|++++++|+.++++++++++|.|.+++ .|+||++||..+..+
T Consensus 83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~~---------- 150 (262)
T 1zem_A 83 GKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQN--YGRIVNTASMAGVKG---------- 150 (262)
T ss_dssp SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHHSC----------
T ss_pred CCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEcchhhccC----------
Confidence 99999999999862346677889999999999999999999999999998754 479999999987653
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccc-----
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH----- 317 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~----- 317 (350)
.++...|++||++++.+++.++.|+ .+.||+||+|+||+|+|++.....
T Consensus 151 -------------------------~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~~~~~ 204 (262)
T 1zem_A 151 -------------------------PPNMAAYGTSKGAIIALTETAALDL-APYNIRVNAISPGYMGPGFMWERQVELQA 204 (262)
T ss_dssp -------------------------CTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSSHHHHHHHHHHH
T ss_pred -------------------------CCCCchHHHHHHHHHHHHHHHHHHH-HhhCeEEEEEecCCcCcchhhhhccchhh
Confidence 2567899999999999999999999 667999999999999998753210
Q ss_pred ------hh-hHHhhhhhh-HHhhhcCccchhhhhhhcccc
Q 018819 318 ------IP-LFRLLFPPF-QKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 318 ------~~-~~~~~~~~~-~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.+ ........+ ......++.+|+|+|+.++++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l 244 (262)
T 1zem_A 205 KVGSQYFSTDPKVVAQQMIGSVPMRRYGDINEIPGVVAFL 244 (262)
T ss_dssp HHTCTTSCSSHHHHHHHHHHTSTTSSCBCGGGSHHHHHHH
T ss_pred hccccccccCHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 00 000000001 111235678999999988764
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-38 Score=284.12 Aligned_cols=229 Identities=17% Similarity=0.159 Sum_probs=183.5
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC------------hhHHHHHHHHhccCCCceEEEEccCCCHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD------------FLKAERAAKSAGMAKENYTIMHLDLASLD 149 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~------------~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~ 149 (350)
..+++|++|||||++|||+++|+.|+++|+ +|++++|+ .+.+++..+++...+.++.+++||++|++
T Consensus 9 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 87 (278)
T 3sx2_A 9 GPLTGKVAFITGAARGQGRAHAVRLAADGA-DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRE 87 (278)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHH
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHH
Confidence 467899999999999999999999999996 89999886 56667766666666778999999999999
Q ss_pred HHHHHHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCC
Q 018819 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229 (350)
Q Consensus 150 ~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~ 229 (350)
+++++++++.+.++++|+||||||+... . .+.++|++++++|+.|+++++++++|.|.+++. .|+||++||.++
T Consensus 88 ~v~~~~~~~~~~~g~id~lv~nAg~~~~-~----~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-~g~iv~isS~~~ 161 (278)
T 3sx2_A 88 SLSAALQAGLDELGRLDIVVANAGIAPM-S----AGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGT-GGSIVLISSSAG 161 (278)
T ss_dssp HHHHHHHHHHHHHCCCCEEEECCCCCCC-S----STHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCS-CEEEEEECCGGG
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCC-C----CCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-CcEEEEEccHHh
Confidence 9999999999999999999999998643 1 268999999999999999999999999977532 479999999988
Q ss_pred CCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCccc
Q 018819 230 NTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA 309 (350)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~ 309 (350)
..+.. .+.++...|++||++++.+++.++.|+ .+.||+||+|+||+|+
T Consensus 162 ~~~~~-------------------------------~~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~PG~v~ 209 (278)
T 3sx2_A 162 LAGVG-------------------------------SADPGSVGYVAAKHGVVGLMRVYANLL-AGQMIRVNSIHPSGVE 209 (278)
T ss_dssp TSCCC-------------------------------CSSHHHHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESCBS
T ss_pred cCCCc-------------------------------cCCCCchHhHHHHHHHHHHHHHHHHHH-hccCcEEEEEecCCcc
Confidence 75420 113577899999999999999999999 6779999999999999
Q ss_pred CCcccccchhhHHhhhhh-------hHHhhhcCccchhhhhhhcccc
Q 018819 310 TTGLFREHIPLFRLLFPP-------FQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 310 t~~~~~~~~~~~~~~~~~-------~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
|++.............+. +......++.+|+|+|+.++++
T Consensus 210 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~p~dvA~~v~~l 256 (278)
T 3sx2_A 210 TPMINNEFTREWLAKMAAATDTPGAMGNAMPVEVLAPEDVANAVAWL 256 (278)
T ss_dssp STTTSSHHHHHHHHHHHHHCC--CTTSCSSSCSSBCHHHHHHHHHHH
T ss_pred CccchhhhHHHHHhhccchhhhhhhhhhhcCcCcCCHHHHHHHHHHH
Confidence 997643211100000000 0000113567999999988764
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=280.10 Aligned_cols=228 Identities=16% Similarity=0.120 Sum_probs=185.7
Q ss_pred ccccCCCEEEEEcCC-CchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccC-CCceEEEEccCCCHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGAS-SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDTF 158 (350)
Q Consensus 81 ~~~l~~~~~lItGgs-~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~-~~~v~~~~~Dvs~~~~v~~~~~~~ 158 (350)
++.+++|++|||||+ +|||+++|++|+++|+ +|++++|+.+..++..+++... +.++.++.||++|+++++++++++
T Consensus 17 ~~~l~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 95 (266)
T 3o38_A 17 HGLLKGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQT 95 (266)
T ss_dssp CSTTTTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHH
Confidence 456899999999998 5999999999999995 8999999998888888887544 468999999999999999999999
Q ss_pred HHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCC
Q 018819 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (350)
Q Consensus 159 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (350)
.++++++|+||||||+... .++.+.+.++|++++++|+.++++++++++|.|.+++. .++||++||..+..+
T Consensus 96 ~~~~g~id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~~iv~~sS~~~~~~------ 167 (266)
T 3o38_A 96 VEKAGRLDVLVNNAGLGGQ-TPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDH-GGVIVNNASVLGWRA------ 167 (266)
T ss_dssp HHHHSCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSC-CEEEEEECCGGGTCC------
T ss_pred HHHhCCCcEEEECCCcCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CeEEEEeCCHHHcCC------
Confidence 9999999999999998654 67778899999999999999999999999999987632 579999999988753
Q ss_pred CCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch
Q 018819 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (350)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~ 318 (350)
.+++..|++||++++.+++.++.|+ .++||+||+|+||+|+|++......
T Consensus 168 -----------------------------~~~~~~Y~~sKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~ 217 (266)
T 3o38_A 168 -----------------------------QHSQSHYAAAKAGVMALTRCSAIEA-VEFGVRINAVSPSIARHKFLEKTSS 217 (266)
T ss_dssp -----------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCCCC--------
T ss_pred -----------------------------CCCCchHHHHHHHHHHHHHHHHHHH-HHcCcEEEEEeCCcccchhhhccCc
Confidence 3578899999999999999999999 6679999999999999987533211
Q ss_pred hhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
+ .............++.+|+|+|+.++++
T Consensus 218 ~--~~~~~~~~~~~~~r~~~~~dva~~i~~l 246 (266)
T 3o38_A 218 S--ELLDRLASDEAFGRAAEPWEVAATIAFL 246 (266)
T ss_dssp -----------CCTTSSCCCHHHHHHHHHHH
T ss_pred H--HHHHHHHhcCCcCCCCCHHHHHHHHHHH
Confidence 1 0001111112235678999999988764
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=282.08 Aligned_cols=226 Identities=20% Similarity=0.216 Sum_probs=186.8
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
++++++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++...+ ++.++.||++|+++++++++++.+
T Consensus 24 ~~~l~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~ 101 (276)
T 2b4q_A 24 YFSLAGRIALVTGGSRGIGQMIAQGLLEAGA-RVFICARDAEACADTATRLSAYG-DCQAIPADLSSEAGARRLAQALGE 101 (276)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHTTSS-CEEECCCCTTSHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-ceEEEEeeCCCHHHHHHHHHHHHH
Confidence 3568899999999999999999999999995 89999999888888877776555 788999999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCC--CCCeEEEEeccCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY--PSKRLIIVGSITGNTNTLAGNV 238 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~--~~g~iV~vSS~~~~~~~~~~~~ 238 (350)
.++++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++. +.|+||++||..+..+
T Consensus 102 ~~g~iD~lvnnAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~~------ 174 (276)
T 2b4q_A 102 LSARLDILVNNAGTSWG-AALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISA------ 174 (276)
T ss_dssp HCSCCSEEEECCCCCCC-CCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTCC------
T ss_pred hcCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcCC------
Confidence 99999999999998654 67778899999999999999999999999999976541 1179999999987643
Q ss_pred CCCCCccccccccccCCCCCCCcccCCCCCCchh-chhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccc
Q 018819 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAK-AYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317 (350)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~ 317 (350)
.++.. .|++||++++.+++.++.|+ .+.||+||+|+||+|+|++.....
T Consensus 175 -----------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~ 224 (276)
T 2b4q_A 175 -----------------------------MGEQAYAYGPSKAALHQLSRMLAKEL-VGEHINVNVIAPGRFPSRMTRHIA 224 (276)
T ss_dssp -----------------------------CCCSCTTHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCCCSTTTHHHH
T ss_pred -----------------------------CCCCccccHHHHHHHHHHHHHHHHHh-cccCeEEEEEEeccCcCcchhhcc
Confidence 23455 89999999999999999999 567999999999999998653211
Q ss_pred hhhHHhhhhhhH---HhhhcCccchhhhhhhcccc
Q 018819 318 IPLFRLLFPPFQ---KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 318 ~~~~~~~~~~~~---~~~~~~~~s~~~~a~~i~~~ 349 (350)
... ...+. .....++.+|+|+|+.++++
T Consensus 225 ~~~----~~~~~~~~~~p~~r~~~p~dvA~~v~~l 255 (276)
T 2b4q_A 225 NDP----QALEADSASIPMGRWGRPEEMAALAISL 255 (276)
T ss_dssp HCH----HHHHHHHHTSTTSSCCCHHHHHHHHHHH
T ss_pred hhH----HHHHHhhcCCCCCCcCCHHHHHHHHHHH
Confidence 010 01111 11234578999999988754
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-39 Score=288.50 Aligned_cols=225 Identities=11% Similarity=0.118 Sum_probs=179.9
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC---hhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD---FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDT 157 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~---~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~ 157 (350)
++++++|++|||||++|||+++|++|+++|+ +|++++|. .+.++++.+++...+.++.++.||++|++++++++++
T Consensus 6 ~~~l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 84 (262)
T 3ksu_A 6 YHDLKNKVIVIAGGIKNLGALTAKTFALESV-NLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDF 84 (262)
T ss_dssp CSCCTTCEEEEETCSSHHHHHHHHHHTTSSC-EEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence 3568999999999999999999999999996 88887654 4567777777777788899999999999999999999
Q ss_pred HHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCC
Q 018819 158 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237 (350)
Q Consensus 158 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~ 237 (350)
+.++++++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+ .|+||++||.++..+
T Consensus 85 ~~~~~g~iD~lvnnAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~----~g~iv~isS~~~~~~----- 154 (262)
T 3ksu_A 85 AEKEFGKVDIAINTVGKVLK-KPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNP----NGHIITIATSLLAAY----- 154 (262)
T ss_dssp HHHHHCSEEEEEECCCCCCS-SCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEE----EEEEEEECCCHHHHH-----
T ss_pred HHHHcCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcC----CCEEEEEechhhccC-----
Confidence 99999999999999998754 67788999999999999999999999999999854 369999999887643
Q ss_pred CCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccc
Q 018819 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317 (350)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~ 317 (350)
.++...|++||++++.|+++++.|+ .++||+||+|+||+|+|++.....
T Consensus 155 ------------------------------~~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~ 203 (262)
T 3ksu_A 155 ------------------------------TGFYSTYAGNKAPVEHYTRAASKEL-MKQQISVNAIAPGPMDTSFFYGQE 203 (262)
T ss_dssp ------------------------------HCCCCC-----CHHHHHHHHHHHHT-TTTTCEEEEEEECCCCTHHHHTCC
T ss_pred ------------------------------CCCCchhHHHHHHHHHHHHHHHHHH-HHcCcEEEEEeeCCCcCccccccC
Confidence 2567789999999999999999999 677999999999999998753321
Q ss_pred hhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 318 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.+.. ...........++.+|||+|+.+++|
T Consensus 204 ~~~~--~~~~~~~~~~~r~~~pedvA~~v~~L 233 (262)
T 3ksu_A 204 TKES--TAFHKSQAMGNQLTKIEDIAPIIKFL 233 (262)
T ss_dssp --------------CCCCSCCGGGTHHHHHHH
T ss_pred chHH--HHHHHhcCcccCCCCHHHHHHHHHHH
Confidence 1100 00011112235678999999988764
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-38 Score=280.46 Aligned_cols=225 Identities=18% Similarity=0.241 Sum_probs=185.4
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEe-cChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~-r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
...++|++|||||++|||+++|++|+++|+ +|++.+ |+.+..++..+++...+.++.++.+|++|.++++++++++.+
T Consensus 9 ~~~~~k~vlITGas~giG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 87 (256)
T 3ezl_A 9 MVMSQRIAYVTGGMGGIGTSICQRLHKDGF-RVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKA 87 (256)
T ss_dssp ----CEEEEETTTTSHHHHHHHHHHHHTTE-EEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999999999995 777766 666666666666666677899999999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
.++++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||.++..+
T Consensus 88 ~~g~id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~~-------- 156 (256)
T 3ezl_A 88 EVGEIDVLVNNAGITRD-VVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERG--WGRIINISSVNGQKG-------- 156 (256)
T ss_dssp HTCCEEEEEECCCCCCC-CCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCCCGGGS--------
T ss_pred hcCCCCEEEECCCCCCC-CchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCEEEEEcchhhccC--------
Confidence 99999999999998754 6788899999999999999999999999999998765 479999999988753
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~ 320 (350)
.++...|++||++++.+++.++.|+ .++||++++|+||+|+|++.......
T Consensus 157 ---------------------------~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~- 207 (256)
T 3ezl_A 157 ---------------------------QFGQTNYSTAKAGIHGFTMSLAQEV-ATKGVTVNTVSPGYIGTDMVKAIRPD- 207 (256)
T ss_dssp ---------------------------CSCCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHTSCHH-
T ss_pred ---------------------------CCCCcccHHHHHHHHHHHHHHHHHH-HHhCCEEEEEEECcccCccccccCHH-
Confidence 3677899999999999999999999 56799999999999999875322111
Q ss_pred HHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 ~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
............++.+|+|+|+.++++
T Consensus 208 --~~~~~~~~~~~~~~~~~~dva~~~~~l 234 (256)
T 3ezl_A 208 --VLEKIVATIPVRRLGSPDEIGSIVAWL 234 (256)
T ss_dssp --HHHHHHHHSTTSSCBCHHHHHHHHHHH
T ss_pred --HHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 111112222345678999999988754
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=276.88 Aligned_cols=220 Identities=16% Similarity=0.162 Sum_probs=179.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC-cEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga-~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+|++|||||++|||+++|++|+++|+ .+|++++|+.+..+++.+++ +.++.++.||++|+++++++++++.+.+|+
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 78 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKY---GDRFFYVVGDITEDSVLKQLVNAAVKGHGK 78 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHH---GGGEEEEESCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHh---CCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 58999999999999999999999863 48888999988887777666 457899999999999999999999999999
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
+|+||||||+.....++.+.+.++|++++++|+.|+++++++++|+|.+++ |+||++||..+..+
T Consensus 79 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~---g~iv~isS~~~~~~------------ 143 (254)
T 3kzv_A 79 IDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN---GNVVFVSSDACNMY------------ 143 (254)
T ss_dssp CCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCSCCCCS------------
T ss_pred ccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC---CeEEEEcCchhccC------------
Confidence 999999999865557788999999999999999999999999999998754 79999999988753
Q ss_pred cccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchh-----
Q 018819 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP----- 319 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~----- 319 (350)
.++...|++||++++.+++.++.|+ +||+||+|+||+|+|++.......
T Consensus 144 -----------------------~~~~~~Y~asK~a~~~~~~~la~e~---~~i~vn~v~PG~v~t~~~~~~~~~~~~~~ 197 (254)
T 3kzv_A 144 -----------------------FSSWGAYGSSKAALNHFAMTLANEE---RQVKAIAVAPGIVDTDMQVNIRENVGPSS 197 (254)
T ss_dssp -----------------------SCCSHHHHHHHHHHHHHHHHHHHHC---TTSEEEEEECSSCCCCCSCCCCCCCCTTT
T ss_pred -----------------------CCCcchHHHHHHHHHHHHHHHHhhc---cCcEEEEEeCCcccchhHHHhhcccCccc
Confidence 3678899999999999999999997 489999999999999976321110
Q ss_pred h-HHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 320 L-FRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 320 ~-~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
+ ..............++.+|+|+|+.+++|
T Consensus 198 ~~~~~~~~~~~~~~~~r~~~p~dva~~v~~L 228 (254)
T 3kzv_A 198 MSAEQLKMFRGLKENNQLLDSSVPATVYAKL 228 (254)
T ss_dssp SCHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhcCCcCCcccHHHHHHHH
Confidence 0 00001111122245678999999988764
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-38 Score=286.85 Aligned_cols=228 Identities=19% Similarity=0.218 Sum_probs=188.0
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
..+++|++|||||++|||+++|++|+++|+ +|++++|+.+.+++..+++...+.++.++.||++|.++++++++++.+.
T Consensus 27 ~~l~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 105 (301)
T 3tjr_A 27 SGFDGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRL 105 (301)
T ss_dssp CCSTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred hccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence 357899999999999999999999999995 8999999999998888888777788999999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++. .|+||++||.++..+
T Consensus 106 ~g~id~lvnnAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-~g~iv~isS~~~~~~--------- 174 (301)
T 3tjr_A 106 LGGVDVVFSNAGIVVA-GPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGT-GGHIAFTASFAGLVP--------- 174 (301)
T ss_dssp HSSCSEEEECCCCCCC-BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCS-CEEEEEECCGGGTSC---------
T ss_pred CCCCCEEEECCCcCCC-CCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCC-CcEEEEeCchhhcCC---------
Confidence 9999999999999754 67778999999999999999999999999999987542 379999999998753
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh-
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL- 320 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~- 320 (350)
.++...|++||++++.++++++.|+ .+.||+|++|+||+|+|++........
T Consensus 175 --------------------------~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 227 (301)
T 3tjr_A 175 --------------------------NAGLGTYGVAKYGVVGLAETLAREV-KPNGIGVSVLCPMVVETKLVSNSERIRG 227 (301)
T ss_dssp --------------------------CTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEECCSCCCSSHHHHHHHHC-
T ss_pred --------------------------CCCchHHHHHHHHHHHHHHHHHHHh-cccCcEEEEEECCccccccccccccccc
Confidence 3678899999999999999999999 667999999999999998753211100
Q ss_pred ---HHhhhh--hhHHh-hhcCccchhhhhhhccc
Q 018819 321 ---FRLLFP--PFQKY-ITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 321 ---~~~~~~--~~~~~-~~~~~~s~~~~a~~i~~ 348 (350)
.....+ .+... .....++|+++|+.+++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~pedvA~~i~~ 261 (301)
T 3tjr_A 228 ADYGMSATPEGAFGPLPTQDESVSADDVARLTAD 261 (301)
T ss_dssp ---------------------CCCHHHHHHHHHH
T ss_pred hhhccccChhhhccccccccCCCCHHHHHHHHHH
Confidence 000000 00000 11346799999998864
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-38 Score=279.49 Aligned_cols=223 Identities=19% Similarity=0.226 Sum_probs=184.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEec-ChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r-~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
+++|++|||||++|||+++|++|+++|+ +|++++| +.+..++..+++...+.++.++.||++|+++++++++++.+.+
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (246)
T 2uvd_A 2 LKGKVALVTGASRGIGRAIAIDLAKQGA-NVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVF 80 (246)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 5789999999999999999999999995 8999888 7777777777776556788999999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||..+..+
T Consensus 81 g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~~---------- 147 (246)
T 2uvd_A 81 GQVDILVNNAGVTKD-NLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQR--HGRIVNIASVVGVTG---------- 147 (246)
T ss_dssp SCCCEEEECCCCCCC-BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCTHHHHC----------
T ss_pred CCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEECCHHhcCC----------
Confidence 999999999998643 5677889999999999999999999999999998754 479999999987643
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.++...|++||++++.+++.++.|+ .+.||+||+|+||+|+|++..........
T Consensus 148 -------------------------~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~ 201 (246)
T 2uvd_A 148 -------------------------NPGQANYVAAKAGVIGLTKTSAKEL-ASRNITVNAIAPGFIATDMTDVLDENIKA 201 (246)
T ss_dssp -------------------------CTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBGGGCSSCCCTTHHH
T ss_pred -------------------------CCCCchHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEEeccccCcchhhcCHHHHH
Confidence 2567899999999999999999999 56799999999999999865321111100
Q ss_pred hhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 323 LLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.........++.+|+|+|+.++++
T Consensus 202 ---~~~~~~p~~~~~~~~dvA~~~~~l 225 (246)
T 2uvd_A 202 ---EMLKLIPAAQFGEAQDIANAVTFF 225 (246)
T ss_dssp ---HHHHTCTTCSCBCHHHHHHHHHHH
T ss_pred ---HHHhcCCCCCCcCHHHHHHHHHHH
Confidence 001111234578999999987653
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-38 Score=280.37 Aligned_cols=226 Identities=22% Similarity=0.221 Sum_probs=181.3
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhH-HHHHHHHhccC-CCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK-AERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~-~~~~~~~l~~~-~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+++|++|||||++|||+++|++|+++|+ +|++++|+.+. .++..+++... +.++.++.+|++|+++++++++++.+.
T Consensus 2 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 80 (260)
T 1x1t_A 2 LKGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQ 80 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999999999999995 89999998777 77776666443 567889999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||..+..+
T Consensus 81 ~g~iD~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~~--------- 148 (260)
T 1x1t_A 81 MGRIDILVNNAGIQHT-ALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG--FGRIINIASAHGLVA--------- 148 (260)
T ss_dssp HSCCSEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTSC---------
T ss_pred cCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCEEEEECcHHhCcC---------
Confidence 9999999999998643 6677889999999999999999999999999998754 479999999988753
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh-
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL- 320 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~- 320 (350)
.++...|++||++++.+++.++.|+ .+.||+||+|+||+|+|++........
T Consensus 149 --------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~ 201 (260)
T 1x1t_A 149 --------------------------SANKSAYVAAKHGVVGFTKVTALET-AGQGITANAICPGWVRTPLVEKQISALA 201 (260)
T ss_dssp --------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-TTTTEEEEEEEECCBCC-----------
T ss_pred --------------------------CCCCchHHHHHHHHHHHHHHHHHHh-ccCCEEEEEEeecCccCchHHHhhhhhc
Confidence 3567899999999999999999999 677999999999999999753211100
Q ss_pred -------HHhhhhh-hHHhhhcCccchhhhhhhcccc
Q 018819 321 -------FRLLFPP-FQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 -------~~~~~~~-~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
....... .......++.+|+|+|+.++++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~p~~~~~~p~dva~~~~~l 238 (260)
T 1x1t_A 202 EKNGVDQETAARELLSEKQPSLQFVTPEQLGGTAVFL 238 (260)
T ss_dssp -------------CHHHHCTTCCCBCHHHHHHHHHHH
T ss_pred cccCCchHHHHHHHhhccCCCCCCcCHHHHHHHHHHH
Confidence 0000000 1112235678999999988754
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=278.25 Aligned_cols=227 Identities=18% Similarity=0.201 Sum_probs=187.8
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
..+++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++...+.++.++.||++|.++++++++++.+.
T Consensus 10 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 88 (260)
T 2zat_A 10 KPLENKVALVTASTDGIGLAIARRLAQDGA-HVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNL 88 (260)
T ss_dssp CTTTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999995 9999999988887777777666678899999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|+||||||+.....++.+.+.++|++++++|+.++++++++++|.|.+++ .|+||++||..+..+
T Consensus 89 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~~--------- 157 (260)
T 2zat_A 89 HGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRG--GGSVLIVSSVGAYHP--------- 157 (260)
T ss_dssp HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCGGGTSC---------
T ss_pred cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEEechhhcCC---------
Confidence 999999999999864335677889999999999999999999999999998765 479999999988743
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.++...|++||++++.+++.++.|+ .+.||+||+|+||+|+|++....... .
T Consensus 158 --------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~-~ 209 (260)
T 2zat_A 158 --------------------------FPNLGPYNVSKTALLGLTKNLAVEL-APRNIRVNCLAPGLIKTNFSQVLWMD-K 209 (260)
T ss_dssp --------------------------CTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSSTTHHHHSS-H
T ss_pred --------------------------CCCchhHHHHHHHHHHHHHHHHHHh-cccCeEEEEEEECcccCccchhcccC-h
Confidence 3577899999999999999999999 66799999999999999864221100 0
Q ss_pred HhhhhhhH-HhhhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQ-KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~-~~~~~~~~s~~~~a~~i~~~ 349 (350)
. ....+. .....++.+|+|+|+.++++
T Consensus 210 ~-~~~~~~~~~~~~~~~~~~dva~~v~~l 237 (260)
T 2zat_A 210 A-RKEYMKESLRIRRLGNPEDCAGIVSFL 237 (260)
T ss_dssp H-HHHHHHHHHTCSSCBCGGGGHHHHHHH
T ss_pred H-HHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 0 001111 12235578999999987654
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-38 Score=279.75 Aligned_cols=224 Identities=19% Similarity=0.144 Sum_probs=165.8
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+.+++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++...+.++.++.||++|+++++++++++.+.
T Consensus 5 ~~~~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T 3qiv_A 5 MRFENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAE 83 (253)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999995 8999999999988888888777788999999999999999999999999
Q ss_pred CCCCcEEEEccccCC--CCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYL--PTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~--~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (350)
++++|+||||||+.. ...++.+.+.++|++.+++|+.|+++++++++|.|.+++ .|+||++||..+.
T Consensus 84 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~--------- 152 (253)
T 3qiv_A 84 FGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRG--GGAIVNQSSTAAW--------- 152 (253)
T ss_dssp HSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CEEEEEECC-------------
T ss_pred cCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC--CCEEEEECCcccc---------
Confidence 999999999999842 224567889999999999999999999999999998765 5799999998875
Q ss_pred CCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchh
Q 018819 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (350)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~ 319 (350)
++...|++||++++.+++.++.|+ .++||+|++|+||+|+|++......+
T Consensus 153 -----------------------------~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~ 202 (253)
T 3qiv_A 153 -----------------------------LYSNYYGLAKVGINGLTQQLSREL-GGRNIRINAIAPGPIDTEANRTTTPK 202 (253)
T ss_dssp ------------------------------------CCHHHHHHHHHHHHHHT-TTTTEEEEEEEC--------------
T ss_pred -----------------------------CCCchhHHHHHHHHHHHHHHHHHH-hhcCeEEEEEEecCCcccchhhcCcH
Confidence 245679999999999999999999 67799999999999999865321111
Q ss_pred hHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.............++.+|+|+|+.++++
T Consensus 203 --~~~~~~~~~~~~~~~~~~~dva~~~~~l 230 (253)
T 3qiv_A 203 --EMVDDIVKGLPLSRMGTPDDLVGMCLFL 230 (253)
T ss_dssp -------------------CCHHHHHHHHH
T ss_pred --HHHHHHhccCCCCCCCCHHHHHHHHHHH
Confidence 1111111112234466888988887653
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=284.58 Aligned_cols=229 Identities=11% Similarity=0.046 Sum_probs=184.4
Q ss_pred CcCccccCCCEEEEEcCCC--chHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHH
Q 018819 78 PQGKKTLRKGSVIITGASS--GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFV 155 (350)
Q Consensus 78 ~~~~~~l~~~~~lItGgs~--gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~ 155 (350)
...++.+++|++|||||+| |||+++|+.|+++|+ +|++++|+.+..+...+.....+ .+.+++||++|++++++++
T Consensus 22 m~~~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~ 99 (296)
T 3k31_A 22 MRTGMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRVDPLAESLG-VKLTVPCDVSDAESVDNMF 99 (296)
T ss_dssp CCCCCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHHT-CCEEEECCTTCHHHHHHHH
T ss_pred ccchhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcC-CeEEEEcCCCCHHHHHHHH
Confidence 3445678999999999997 999999999999996 89999998655444433333222 4688999999999999999
Q ss_pred HHHHHcCCCCcEEEEccccCCC---CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCC
Q 018819 156 DTFRRSGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTN 232 (350)
Q Consensus 156 ~~~~~~~g~id~lv~~Ag~~~~---~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~ 232 (350)
+++.+++|++|+||||||+... ..++.+.+.++|++.+++|+.++++++++++|.|.+ .|+||++||.++..+
T Consensus 100 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~----~g~IV~isS~~~~~~ 175 (296)
T 3k31_A 100 KVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTN----GGSILTLSYYGAEKV 175 (296)
T ss_dssp HHHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTT----CEEEEEEECGGGTSC
T ss_pred HHHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCEEEEEEehhhccC
Confidence 9999999999999999998642 256778899999999999999999999999999876 379999999988753
Q ss_pred CCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 233 TLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
.++...|++||++++.|+++++.|+ .++||+||+|+||+|+|++
T Consensus 176 -----------------------------------~~~~~~Y~asKaal~~l~~~la~e~-~~~gIrvn~v~PG~v~T~~ 219 (296)
T 3k31_A 176 -----------------------------------VPHYNVMGVCKAALEASVKYLAVDL-GKQQIRVNAISAGPVRTLA 219 (296)
T ss_dssp -----------------------------------CTTTTHHHHHHHHHHHHHHHHHHHH-HTTTEEEEEEEECCCCCSS
T ss_pred -----------------------------------CCCchhhHHHHHHHHHHHHHHHHHH-hhcCcEEEEEEECCCcCch
Confidence 3577899999999999999999999 6779999999999999987
Q ss_pred ccccchhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 313 LFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.... .................++.+|||+|+.+++|
T Consensus 220 ~~~~-~~~~~~~~~~~~~~p~~r~~~pedvA~~v~fL 255 (296)
T 3k31_A 220 SSGI-SDFHYILTWNKYNSPLRRNTTLDDVGGAALYL 255 (296)
T ss_dssp CCSC-HHHHHHHHHHHHHSTTSSCCCHHHHHHHHHHH
T ss_pred hhcc-cchHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 5321 11111111112222346678999999988764
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=278.98 Aligned_cols=227 Identities=21% Similarity=0.228 Sum_probs=186.6
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccC-CCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~-~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
+++++|++|||||++|||+++|++|+++|+ +|++++|+.++.++..+++... +.++.++.||++|+++++++++++.+
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (263)
T 3ai3_A 3 MGISGKVAVITGSSSGIGLAIAEGFAKEGA-HIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRS 81 (263)
T ss_dssp CCCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999999999995 9999999988777777666543 56789999999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
.++++|+||||||+... .++.+.+.++|++.+++|+.++++++++++|.|.+++ .|+||++||..+..+
T Consensus 82 ~~g~id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~~-------- 150 (263)
T 3ai3_A 82 SFGGADILVNNAGTGSN-ETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARG--GGAIIHNASICAVQP-------- 150 (263)
T ss_dssp HHSSCSEEEECCCCCCC-CCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTSC--------
T ss_pred HcCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEECchhhcCC--------
Confidence 99999999999998653 6778899999999999999999999999999997654 479999999988743
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchh-
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP- 319 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~- 319 (350)
.++...|++||++++.+++.++.|+ .++||+||+|+||+|+|++.......
T Consensus 151 ---------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~ 202 (263)
T 3ai3_A 151 ---------------------------LWYEPIYNVTKAALMMFSKTLATEV-IKDNIRVNCINPGLILTPDWIKTAKEL 202 (263)
T ss_dssp ---------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCCHHHHHHHHHH
T ss_pred ---------------------------CCCcchHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEecCcccCcchhhhhHhh
Confidence 2567899999999999999999999 56799999999999999864321000
Q ss_pred -------hHHhhhhhhHH--hhhcCccchhhhhhhcccc
Q 018819 320 -------LFRLLFPPFQK--YITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 320 -------~~~~~~~~~~~--~~~~~~~s~~~~a~~i~~~ 349 (350)
.... ...+.. ....++.+|+|+|+.++++
T Consensus 203 ~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~dvA~~~~~l 240 (263)
T 3ai3_A 203 TKDNGGDWKGY-LQSVADEHAPIKRFASPEELANFFVFL 240 (263)
T ss_dssp TTTTTCCHHHH-HHHHHHHHCTTCSCBCHHHHHHHHHHH
T ss_pred hcccCCcHHHH-HHHHHhcCCCCCCCcCHHHHHHHHHHH
Confidence 0000 011111 2235678999999988654
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=276.29 Aligned_cols=219 Identities=22% Similarity=0.253 Sum_probs=184.7
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCC-CceEEEEccC--CCHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDL--ASLDSVRQFVDTF 158 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~-~~v~~~~~Dv--s~~~~v~~~~~~~ 158 (350)
..+++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++...+ .++.++.+|+ +|.++++++++++
T Consensus 10 ~~l~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~ 88 (247)
T 3i1j_A 10 ELLKGRVILVTGAARGIGAAAARAYAAHGA-SVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARV 88 (247)
T ss_dssp TTTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHH
T ss_pred ccCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHH
Confidence 357899999999999999999999999995 89999999988888888776544 4567777777 9999999999999
Q ss_pred HHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCC
Q 018819 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (350)
Q Consensus 159 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (350)
.+.++++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|+|.+++ .|+||++||..+..+
T Consensus 89 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~~------ 160 (247)
T 3i1j_A 89 EHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSE--DASIAFTSSSVGRKG------ 160 (247)
T ss_dssp HHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSS--SEEEEEECCGGGTSC------
T ss_pred HHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC--CCeEEEEcchhhcCC------
Confidence 999999999999999875557788899999999999999999999999999998765 579999999988753
Q ss_pred CCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch
Q 018819 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (350)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~ 318 (350)
.++...|++||++++.+++.++.|+...+||+||+|+||+|+|++.....
T Consensus 161 -----------------------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~i~v~~v~PG~v~t~~~~~~~- 210 (247)
T 3i1j_A 161 -----------------------------RANWGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATRTGMRAQAY- 210 (247)
T ss_dssp -----------------------------CTTCHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEECCCCSSHHHHHHS-
T ss_pred -----------------------------CCCcchhHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCcccCccchhcc-
Confidence 35778999999999999999999994337999999999999998642211
Q ss_pred hhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
+ . ....+..+|+|+|+.++++
T Consensus 211 ~-------~---~~~~~~~~p~dva~~~~~l 231 (247)
T 3i1j_A 211 P-------D---ENPLNNPAPEDIMPVYLYL 231 (247)
T ss_dssp T-------T---SCGGGSCCGGGGTHHHHHH
T ss_pred c-------c---cCccCCCCHHHHHHHHHHH
Confidence 0 0 0012346789988887654
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=278.41 Aligned_cols=228 Identities=20% Similarity=0.172 Sum_probs=179.0
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+.+++|++|||||++|||+++|++|+++|+ +|++++|+.+.+++..+++ +.++.++.||++|.++++++++++.+.
T Consensus 5 m~l~~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (261)
T 3n74_A 5 MSLEGKVALITGAGSGFGEGMAKRFAKGGA-KVVIVDRDKAGAERVAGEI---GDAALAVAADISKEADVDAAVEAALSK 80 (261)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---CTTEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHh---CCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 567899999999999999999999999995 8999999998888877766 357899999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCC--CCCCeEEEEeccCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSD--YPSKRLIIVGSITGNTNTLAGNVP 239 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~--~~~g~iV~vSS~~~~~~~~~~~~~ 239 (350)
++++|+||||||+......+.+.+.++|++++++|+.++++++++++|.|.+++ ...++||++||..+..+
T Consensus 81 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~------- 153 (261)
T 3n74_A 81 FGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGRP------- 153 (261)
T ss_dssp HSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTSC-------
T ss_pred cCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcCC-------
Confidence 999999999999876456777889999999999999999999999999997642 11368999999988753
Q ss_pred CCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchh
Q 018819 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (350)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~ 319 (350)
.++...|++||++++.++++++.|+ .++||+|++|+||+|+|++.......
T Consensus 154 ----------------------------~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~ 204 (261)
T 3n74_A 154 ----------------------------RPNLAWYNATKGWVVSVTKALAIEL-APAKIRVVALNPVAGETPLLTTFMGE 204 (261)
T ss_dssp ----------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEEC-------------
T ss_pred ----------------------------CCCccHHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEecCcccChhhhhhccc
Confidence 3677899999999999999999999 66799999999999999875321110
Q ss_pred h-HHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 320 L-FRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 320 ~-~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
. ..............++.+|+|+|+.++++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l 235 (261)
T 3n74_A 205 DSEEIRKKFRDSIPMGRLLKPDDLAEAAAFL 235 (261)
T ss_dssp ------------CTTSSCCCHHHHHHHHHHH
T ss_pred CcHHHHHHHhhcCCcCCCcCHHHHHHHHHHH
Confidence 0 00001111122235678999999988754
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=279.27 Aligned_cols=221 Identities=19% Similarity=0.194 Sum_probs=171.3
Q ss_pred CCcCccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHH
Q 018819 77 SPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVD 156 (350)
Q Consensus 77 ~~~~~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~ 156 (350)
+...+|.+++|++|||||++|||+++|+.|+++|+ +|++++|+.+...+..... .+.++.||++|+++++++++
T Consensus 18 ~~~~~m~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~ 91 (260)
T 3gem_A 18 YFQGHMTLSSAPILITGASQRVGLHCALRLLEHGH-RVIISYRTEHASVTELRQA-----GAVALYGDFSCETGIMAFID 91 (260)
T ss_dssp ---------CCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESSCCHHHHHHHHH-----TCEEEECCTTSHHHHHHHHH
T ss_pred ccccCcCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHhc-----CCeEEECCCCCHHHHHHHHH
Confidence 34456788999999999999999999999999996 8999999876654444333 26889999999999999999
Q ss_pred HHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCC
Q 018819 157 TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236 (350)
Q Consensus 157 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~ 236 (350)
++.+.++++|+||||||+... .. .+.+.++|++++++|+.|+++++++++|+|.+++ .|+||++||..+..+
T Consensus 92 ~~~~~~g~iD~lv~nAg~~~~-~~-~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~--~g~iv~isS~~~~~~---- 163 (260)
T 3gem_A 92 LLKTQTSSLRAVVHNASEWLA-ET-PGEEADNFTRMFSVHMLAPYLINLHCEPLLTASE--VADIVHISDDVTRKG---- 163 (260)
T ss_dssp HHHHHCSCCSEEEECCCCCCC-CC-TTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSS--SCEEEEECCGGGGTC----
T ss_pred HHHHhcCCCCEEEECCCccCC-CC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CcEEEEECChhhcCC----
Confidence 999999999999999998654 33 4678899999999999999999999999998875 479999999988753
Q ss_pred CCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccccc
Q 018819 237 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 316 (350)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~ 316 (350)
.++...|++||++++.|+++++.|+ .+ +|+||+|+||+|+|++....
T Consensus 164 -------------------------------~~~~~~Y~asKaa~~~l~~~la~e~-~~-~Irvn~v~PG~v~t~~~~~~ 210 (260)
T 3gem_A 164 -------------------------------SSKHIAYCATKAGLESLTLSFAARF-AP-LVKVNGIAPALLMFQPKDDA 210 (260)
T ss_dssp -------------------------------CSSCHHHHHHHHHHHHHHHHHHHHH-TT-TCEEEEEEECTTCC------
T ss_pred -------------------------------CCCcHhHHHHHHHHHHHHHHHHHHH-CC-CCEEEEEeecccccCCCCCH
Confidence 3677899999999999999999999 45 69999999999999864211
Q ss_pred chhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 317 HIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
. ............++.+|+|+|+.++++
T Consensus 211 ~-----~~~~~~~~~p~~r~~~~edva~~v~~L 238 (260)
T 3gem_A 211 A-----YRANALAKSALGIEPGAEVIYQSLRYL 238 (260)
T ss_dssp --------------CCSCCCCCTHHHHHHHHHH
T ss_pred H-----HHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 1 001111122235567899999988754
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-38 Score=282.01 Aligned_cols=225 Identities=19% Similarity=0.155 Sum_probs=171.6
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+.+++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++ +.++.++.||++|+++++++++++.++
T Consensus 3 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 78 (257)
T 3tpc_A 3 MQLKSRVFIVTGASSGLGAAVTRMLAQEGA-TVLGLDLKPPAGEEPAAEL---GAAVRFRNADVTNEADATAALAFAKQE 78 (257)
T ss_dssp -CCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSCC---------------CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHh---CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 457899999999999999999999999996 8999999987777666555 457899999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCC---CCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCC----CCCCeEEEEeccCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAK---EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSD----YPSKRLIIVGSITGNTNTL 234 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~---~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~----~~~g~iV~vSS~~~~~~~~ 234 (350)
+|++|+||||||+...... ..+.+.++|++++++|+.|++++++++.|.|.++. .+.|+||++||.++..+
T Consensus 79 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~~-- 156 (257)
T 3tpc_A 79 FGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDG-- 156 (257)
T ss_dssp HSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHC--
T ss_pred cCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhccC--
Confidence 9999999999998754221 12578999999999999999999999999998741 12579999999988753
Q ss_pred CCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccc
Q 018819 235 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (350)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~ 314 (350)
.++...|++||++++.++++++.|+ .++||+||+|+||+|+|++..
T Consensus 157 ---------------------------------~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~PG~v~t~~~~ 202 (257)
T 3tpc_A 157 ---------------------------------QIGQAAYAASKGGVAALTLPAAREL-ARFGIRVVTIAPGIFDTPMMA 202 (257)
T ss_dssp ---------------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBSCC---
T ss_pred ---------------------------------CCCCcchHHHHHHHHHHHHHHHHHH-HHcCeEEEEEEeCCCCChhhc
Confidence 3577899999999999999999999 677999999999999998753
Q ss_pred ccchhhHHhhhhhhHHhhh-cCccchhhhhhhcccc
Q 018819 315 REHIPLFRLLFPPFQKYIT-KGYVSEDEAGKRLAQV 349 (350)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~-~~~~s~~~~a~~i~~~ 349 (350)
........ ........ .++.+|+|+|+.++++
T Consensus 203 ~~~~~~~~---~~~~~~p~~~r~~~~~dva~~v~~l 235 (257)
T 3tpc_A 203 GMPQDVQD---ALAASVPFPPRLGRAEEYAALVKHI 235 (257)
T ss_dssp --------------CCSSSSCSCBCHHHHHHHHHHH
T ss_pred cCCHHHHH---HHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 21111000 00001112 4578999999988754
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=279.32 Aligned_cols=225 Identities=17% Similarity=0.156 Sum_probs=183.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhH--HHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK--AERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~--~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
+|++|||||++|||+++|++|+++|+ +|++++|+.+. .++..+++...+.++.++.||++|+++++++++++.+.++
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 80 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAADGF-DIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLG 80 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 68999999999999999999999995 89999998776 7777777766667899999999999999999999999999
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCC
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (350)
++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++. .|+||++||..+..+
T Consensus 81 ~iD~lv~nAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~----------- 147 (258)
T 3a28_C 81 GFDVLVNNAGIAQI-KPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGV-KGKIINAASIAAIQG----------- 147 (258)
T ss_dssp CCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CCEEEEECCGGGTSC-----------
T ss_pred CCCEEEECCCCCCC-CChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCC-CcEEEEECcchhccC-----------
Confidence 99999999998644 67778899999999999999999999999999987541 279999999988753
Q ss_pred ccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH--
Q 018819 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF-- 321 (350)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~-- 321 (350)
.++...|++||++++.+++.++.|+ .+.||+||+|+||+|+|++.........
T Consensus 148 ------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~ 202 (258)
T 3a28_C 148 ------------------------FPILSAYSTTKFAVRGLTQAAAQEL-APKGHTVNAYAPGIVGTGMWEQIDAELSKI 202 (258)
T ss_dssp ------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBCSHHHHHHHHHHHHH
T ss_pred ------------------------CCCchhHHHHHHHHHHHHHHHHHHH-HhhCeEEEEEECCccCChhhhhhhhhhccc
Confidence 3567899999999999999999999 6679999999999999986432110000
Q ss_pred -----HhhhhhhHH-hhhcCccchhhhhhhcccc
Q 018819 322 -----RLLFPPFQK-YITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 -----~~~~~~~~~-~~~~~~~s~~~~a~~i~~~ 349 (350)
......+.. ....++.+|+|+|+.++++
T Consensus 203 ~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l 236 (258)
T 3a28_C 203 NGKPIGENFKEYSSSIALGRPSVPEDVAGLVSFL 236 (258)
T ss_dssp HCCCTTHHHHHHHTTCTTSSCBCHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHhcCCCCCccCHHHHHHHHHHH
Confidence 000001111 1234578999999988754
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-37 Score=282.76 Aligned_cols=226 Identities=15% Similarity=0.079 Sum_probs=178.3
Q ss_pred ccccCCCEEEEEcCC--CchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 158 (350)
Q Consensus 81 ~~~l~~~~~lItGgs--~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~ 158 (350)
+..+++|++|||||+ +|||+++|+.|+++|+ +|++++|+....+...+... ...++.++.||++|+++++++++++
T Consensus 26 ~~~l~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~~ 103 (293)
T 3grk_A 26 SGLLQGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAE-ELGAFVAGHCDVADAASIDAVFETL 103 (293)
T ss_dssp -CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHH-HHTCEEEEECCTTCHHHHHHHHHHH
T ss_pred cccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHH-hcCCceEEECCCCCHHHHHHHHHHH
Confidence 446899999999999 5599999999999996 89999998543333322222 2236889999999999999999999
Q ss_pred HHcCCCCcEEEEccccCCC---CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCC
Q 018819 159 RRSGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLA 235 (350)
Q Consensus 159 ~~~~g~id~lv~~Ag~~~~---~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~ 235 (350)
.++++++|+||||||+... ..++.+.+.++|++++++|+.++++++++++|.|.+ .|+||++||..+..+
T Consensus 104 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~----~g~Iv~isS~~~~~~--- 176 (293)
T 3grk_A 104 EKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMAD----GGSILTLTYYGAEKV--- 176 (293)
T ss_dssp HHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTT----CEEEEEEECGGGTSB---
T ss_pred HHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccC----CCEEEEEeehhhccC---
Confidence 9999999999999998642 356778899999999999999999999999999976 379999999988753
Q ss_pred CCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccc
Q 018819 236 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 315 (350)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~ 315 (350)
.+++..|++||++++.|+++++.|+ .++||+||+|+||+|+|++...
T Consensus 177 --------------------------------~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~ 223 (293)
T 3grk_A 177 --------------------------------MPNYNVMGVAKAALEASVKYLAVDL-GPQNIRVNAISAGPIKTLAASG 223 (293)
T ss_dssp --------------------------------CTTTTHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCCCC-----
T ss_pred --------------------------------CCchHHHHHHHHHHHHHHHHHHHHH-hHhCCEEEEEecCCCcchhhhc
Confidence 3577899999999999999999999 6779999999999999987532
Q ss_pred cchhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 316 EHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.. ................++.+|+|+|+.+++|
T Consensus 224 ~~-~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L 256 (293)
T 3grk_A 224 IG-DFRYILKWNEYNAPLRRTVTIDEVGDVGLYF 256 (293)
T ss_dssp -C-CHHHHHHHHHHHSTTSSCCCHHHHHHHHHHH
T ss_pred cc-chHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 11 1111111112223346678999999988764
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-37 Score=282.51 Aligned_cols=224 Identities=15% Similarity=0.133 Sum_probs=183.1
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEe-cChhHHHHHHHHhc-cCCCceEEEEccCCCHH----------
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAG-MAKENYTIMHLDLASLD---------- 149 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~-r~~~~~~~~~~~l~-~~~~~v~~~~~Dvs~~~---------- 149 (350)
+.+++|++|||||++|||+++|+.|+++|+ +|++++ |+.+..++..+++. ..+.++.+++||++|++
T Consensus 5 ~~l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 83 (291)
T 1e7w_A 5 TAPTVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGS 83 (291)
T ss_dssp ---CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----C
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCcccccccccccc
Confidence 457899999999999999999999999996 899999 99888887777775 44668999999999999
Q ss_pred -------HHHHHHHHHHHcCCCCcEEEEccccCCCCCCCCCCC--------------HHHHHHHHhhhhHHHHHHHHHHH
Q 018819 150 -------SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFT--------------AEGFELSVGTNHLGHFLLSRLLL 208 (350)
Q Consensus 150 -------~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~--------------~~~~~~~~~~n~~g~~~l~~~~~ 208 (350)
+++++++++.+.++++|+||||||+... .++.+.+ .++|++++++|+.|+++++++++
T Consensus 84 ~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~ 162 (291)
T 1e7w_A 84 APVTLFTRCAELVAACYTHWGRCDVLVNNASSFYP-TPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFA 162 (291)
T ss_dssp CCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCC-CCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCC-CChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999999999999999998654 5677888 99999999999999999999999
Q ss_pred HHHhcCCC----CCCeEEEEeccCCCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHH
Q 018819 209 DDLKQSDY----PSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLT 284 (350)
Q Consensus 209 ~~~~~~~~----~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~ 284 (350)
|.|.+++. ..|+||++||..+..+ .++...|++||++++.+
T Consensus 163 ~~m~~~~~~~~~~~g~Iv~isS~~~~~~-----------------------------------~~~~~~Y~asKaa~~~l 207 (291)
T 1e7w_A 163 HRVAGTPAKHRGTNYSIINMVDAMTNQP-----------------------------------LLGYTIYTMAKGALEGL 207 (291)
T ss_dssp HHHHTSCGGGSCSCEEEEEECCTTTTSC-----------------------------------CTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCCcEEEEEechhhcCC-----------------------------------CCCCchhHHHHHHHHHH
Confidence 99986531 0379999999988753 36778999999999999
Q ss_pred HHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhhhhhhHH-hhhc-Cccchhhhhhhcccc
Q 018819 285 MQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQK-YITK-GYVSEDEAGKRLAQV 349 (350)
Q Consensus 285 ~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~-~~~~-~~~s~~~~a~~i~~~ 349 (350)
++.++.|+ .+.||+||+|+||+|+|++ . ..+. . ...+.. .... ++.+|+|+|+.++++
T Consensus 208 ~~~la~e~-~~~gI~vn~v~PG~v~T~~-~--~~~~--~-~~~~~~~~p~~~r~~~pedvA~~v~~l 267 (291)
T 1e7w_A 208 TRSAALEL-APLQIRVNGVGPGLSVLVD-D--MPPA--V-WEGHRSKVPLYQRDSSAAEVSDVVIFL 267 (291)
T ss_dssp HHHHHHHH-GGGTEEEEEEEESSBCCGG-G--SCHH--H-HHHHHTTCTTTTSCBCHHHHHHHHHHH
T ss_pred HHHHHHHH-HhcCeEEEEEeeCCccCCc-c--CCHH--H-HHHHHhhCCCCCCCCCHHHHHHHHHHH
Confidence 99999999 6779999999999999987 2 1111 1 011111 1223 578999999988764
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-37 Score=279.64 Aligned_cols=224 Identities=16% Similarity=0.096 Sum_probs=179.5
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
|.+++|++|||||++|||+++|++|+++|+ +|++++|+.+.+++..+++ +.++.++.||++|+++++++++++.+.
T Consensus 1 M~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 76 (281)
T 3zv4_A 1 MKLTGEVALITGGASGLGRALVDRFVAEGA-RVAVLDKSAERLRELEVAH---GGNAVGVVGDVRSLQDQKRAAERCLAA 76 (281)
T ss_dssp CTTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHT---BTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCcCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHc---CCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 357899999999999999999999999995 9999999988877776654 457899999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCC----CCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKE----PTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~----~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~ 237 (350)
++++|+||||||+......+ .+.+.++|++++++|+.|+++++++++|.|.+++ |+||++||..+..+
T Consensus 77 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~---g~iv~isS~~~~~~----- 148 (281)
T 3zv4_A 77 FGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSR---GSVVFTISNAGFYP----- 148 (281)
T ss_dssp HSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCGGGTSS-----
T ss_pred cCCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC---CeEEEEecchhccC-----
Confidence 99999999999986432332 2455678999999999999999999999997753 79999999988753
Q ss_pred CCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccc
Q 018819 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317 (350)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~ 317 (350)
.++...|++||++++.++++++.|+ .+. |+||+|+||+|+|++.....
T Consensus 149 ------------------------------~~~~~~Y~asKaa~~~l~~~la~e~-~~~-Irvn~v~PG~v~T~~~~~~~ 196 (281)
T 3zv4_A 149 ------------------------------NGGGPLYTATKHAVVGLVRQMAFEL-APH-VRVNGVAPGGMNTDLRGPSS 196 (281)
T ss_dssp ------------------------------SSSCHHHHHHHHHHHHHHHHHHHHH-TTT-SEEEEEEECSSCC--CCCTT
T ss_pred ------------------------------CCCCchhHHHHHHHHHHHHHHHHHh-cCC-CEEEEEECCcCcCCcccccc
Confidence 3577899999999999999999999 555 99999999999999753211
Q ss_pred hhhHH-------hhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 318 IPLFR-------LLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 318 ~~~~~-------~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..... ............++.+|+|+|+.+++|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~fL 235 (281)
T 3zv4_A 197 LGLSEQSISSVPLADMLKSVLPIGRMPALEEYTGAYVFF 235 (281)
T ss_dssp CC--------CCHHHHHHHTCTTSSCCCGGGGSHHHHHH
T ss_pred cccccccccchhHHHHHHhcCCCCCCCCHHHHHHHHHHh
Confidence 10000 000111122346678999999988764
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=276.64 Aligned_cols=222 Identities=20% Similarity=0.226 Sum_probs=175.4
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh-hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~-~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
.+++|++|||||++|||+++|++|+++|+ +|++++|+. +..++. +...+.++.+++||++|+++++++++++.+.
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~---~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (249)
T 2ew8_A 4 RLKDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAPEAEAA---IRNLGRRVLTVKCDVSQPGDVEAFGKQVIST 79 (249)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHH---HHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCchhHHHHH---HHhcCCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999999995 899999987 665542 3333567899999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||..+..+
T Consensus 80 ~g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~~--------- 147 (249)
T 2ew8_A 80 FGRCDILVNNAGIYPL-IPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG--WGRIINLTSTTYWLK--------- 147 (249)
T ss_dssp HSCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGGSC---------
T ss_pred cCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CeEEEEEcchhhccC---------
Confidence 9999999999998644 6677889999999999999999999999999998764 479999999988753
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch-hh
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-PL 320 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~-~~ 320 (350)
.++...|++||++++.+++.++.|+ .+.||+||+|+||+|+|++...... +.
T Consensus 148 --------------------------~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~ 200 (249)
T 2ew8_A 148 --------------------------IEAYTHYISTKAANIGFTRALASDL-GKDGITVNAIAPSLVRTATTEASALSAM 200 (249)
T ss_dssp --------------------------CSSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCC-------------
T ss_pred --------------------------CCCchhHHHHHHHHHHHHHHHHHHH-HhcCcEEEEEecCcCcCccchhccccch
Confidence 3567899999999999999999999 5679999999999999987531111 00
Q ss_pred HHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 ~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.... ..+. ....++.+|+|+|+.++++
T Consensus 201 ~~~~-~~~~-~~~~~~~~p~dva~~~~~l 227 (249)
T 2ew8_A 201 FDVL-PNML-QAIPRLQVPLDLTGAAAFL 227 (249)
T ss_dssp ------CTT-SSSCSCCCTHHHHHHHHHH
T ss_pred hhHH-HHhh-CccCCCCCHHHHHHHHHHH
Confidence 0000 0010 1224567999999988754
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-37 Score=282.85 Aligned_cols=229 Identities=18% Similarity=0.174 Sum_probs=185.6
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCC---ceEEEEccCCCHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE---NYTIMHLDLASLDSVRQFVDT 157 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~---~v~~~~~Dvs~~~~v~~~~~~ 157 (350)
++.+++|++|||||++|||+++|+.|+++|+ +|++++|+.+..++..+++...+. ++.++.||++|++++++++++
T Consensus 21 m~~l~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 99 (297)
T 1xhl_A 21 MARFSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINT 99 (297)
T ss_dssp --CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHH
Confidence 4567899999999999999999999999995 899999998888877777755555 789999999999999999999
Q ss_pred HHHcCCCCcEEEEccccCCCCCC--CCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCC
Q 018819 158 FRRSGRPLDVLVCNAAVYLPTAK--EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLA 235 (350)
Q Consensus 158 ~~~~~g~id~lv~~Ag~~~~~~~--~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~ 235 (350)
+.+.++++|+||||||+... .+ +.+.+.++|++++++|+.|+++++++++|.|.+++ |+||++||..+..+.
T Consensus 100 ~~~~~g~iD~lvnnAG~~~~-~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~---g~IV~isS~~~~~~~-- 173 (297)
T 1xhl_A 100 TLAKFGKIDILVNNAGANLA-DGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK---GEIVNVSSIVAGPQA-- 173 (297)
T ss_dssp HHHHHSCCCEEEECCCCCCC-CSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT---CEEEEECCGGGSSSC--
T ss_pred HHHhcCCCCEEEECCCcCcC-CCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC---CEEEEEcCchhccCC--
Confidence 99999999999999998643 44 77889999999999999999999999999998753 799999999876421
Q ss_pred CCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccc
Q 018819 236 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 315 (350)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~ 315 (350)
.++...|++||++++.+++.++.|+ .+.||+||+|+||+|+|++...
T Consensus 174 --------------------------------~~~~~~Y~asKaa~~~l~~~la~el-~~~gI~v~~v~PG~v~T~~~~~ 220 (297)
T 1xhl_A 174 --------------------------------HSGYPYYACAKAALDQYTRCTAIDL-IQHGVRVNSVSPGAVATGFMGA 220 (297)
T ss_dssp --------------------------------CTTSHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBCSSHHHH
T ss_pred --------------------------------CCCcchHHHHHHHHHHHHHHHHHHh-cccCeEEEEEeeCCCcCccccc
Confidence 1467899999999999999999999 6679999999999999987532
Q ss_pred cchhh-HHhhhhhhH-----HhhhcCccchhhhhhhcccc
Q 018819 316 EHIPL-FRLLFPPFQ-----KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 316 ~~~~~-~~~~~~~~~-----~~~~~~~~s~~~~a~~i~~~ 349 (350)
...+. .......+. .....++.+|+|+|+.++++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~l 260 (297)
T 1xhl_A 221 MGLPETASDKLYSFIGSRKECIPVGHCGKPEEIANIIVFL 260 (297)
T ss_dssp TTCCHHHHHHHHHHHHHCTTTCTTSSCBCHHHHHHHHHHH
T ss_pred cccccccccchHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 11000 000000010 11234578999999988754
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-37 Score=273.07 Aligned_cols=218 Identities=19% Similarity=0.156 Sum_probs=180.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|++|||||++|||++++++|+++|+ +|++++|+.+..++..+++ + +.++.||++|+++++++++++.+.+
T Consensus 2 ~l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~--~~~~~~D~~~~~~~~~~~~~~~~~~ 75 (245)
T 1uls_A 2 RLKDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAV---G--AHPVVMDVADPASVERGFAEALAHL 75 (245)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT---T--CEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHc---C--CEEEEecCCCHHHHHHHHHHHHHHc
Confidence 46789999999999999999999999995 9999999987777665544 2 7788999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||.. ..+
T Consensus 76 g~id~lvn~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~-~~~---------- 141 (245)
T 1uls_A 76 GRLDGVVHYAGITRD-NFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKN--PGSIVLTASRV-YLG---------- 141 (245)
T ss_dssp SSCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--CEEEEEECCGG-GGC----------
T ss_pred CCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CCEEEEEccch-hcC----------
Confidence 999999999998643 6677889999999999999999999999999998765 47999999988 543
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.++...|++||+++..+++.++.|+ .+.||+||+|+||+|+|++... ..+.
T Consensus 142 -------------------------~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~-~~~~-- 192 (245)
T 1uls_A 142 -------------------------NLGQANYAASMAGVVGLTRTLALEL-GRWGIRVNTLAPGFIETRMTAK-VPEK-- 192 (245)
T ss_dssp -------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCTTTSS-SCHH--
T ss_pred -------------------------CCCchhHHHHHHHHHHHHHHHHHHH-hHhCeEEEEEEeCcCcCcchhh-cCHH--
Confidence 2567899999999999999999999 5679999999999999987532 1110
Q ss_pred hhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 323 LLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
............++.+|+|+|+.++++
T Consensus 193 ~~~~~~~~~p~~~~~~~~dvA~~v~~l 219 (245)
T 1uls_A 193 VREKAIAATPLGRAGKPLEVAYAALFL 219 (245)
T ss_dssp HHHHHHHTCTTCSCBCHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCCCcCHHHHHHHHHHH
Confidence 000011111235578999999988753
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=280.36 Aligned_cols=225 Identities=17% Similarity=0.207 Sum_probs=184.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEe-cChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~-r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
.+++|++|||||++|||+++|++|+++|+ +|++.+ |+.+..++..+++...+.++.++.||++|.++++++++++.+.
T Consensus 22 ~~~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 100 (269)
T 3gk3_A 22 MQAKRVAFVTGGMGGLGAAISRRLHDAGM-AVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLAD 100 (269)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred hhcCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999999996 788877 6666666666667666778999999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|+||||||+... .++.+.+.++|++++++|+.+++++++.++|.|.+++ .|+||++||.++..+
T Consensus 101 ~g~id~li~nAg~~~~-~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~~--------- 168 (269)
T 3gk3_A 101 FGKVDVLINNAGITRD-ATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERR--FGRIVNIGSVNGSRG--------- 168 (269)
T ss_dssp HSCCSEEEECCCCCCC-BCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHHHC---------
T ss_pred cCCCCEEEECCCcCCC-cchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCEEEEeCChhhccC---------
Confidence 9999999999998754 6778899999999999999999999999999998765 479999999988753
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.+++..|++||++++.+++.++.|+ .++||+||+|+||+|+|++.........
T Consensus 169 --------------------------~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 221 (269)
T 3gk3_A 169 --------------------------AFGQANYASAKAGIHGFTKTLALET-AKRGITVNTVSPGYLATAMVEAVPQDVL 221 (269)
T ss_dssp --------------------------CTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCTTTTC------
T ss_pred --------------------------CCCcchHHHHHHHHHHHHHHHHHHh-hhcCCEEEEEecCcccchhhhhhchhHH
Confidence 3577899999999999999999999 5679999999999999987643211110
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
. ..........++.+|+|+|+.++++
T Consensus 222 ~--~~~~~~~~~~~~~~p~dvA~~v~~L 247 (269)
T 3gk3_A 222 E--AKILPQIPVGRLGRPDEVAALIAFL 247 (269)
T ss_dssp ---CCSGGGCTTSSCBCHHHHHHHHHHH
T ss_pred H--HHhhhcCCcCCccCHHHHHHHHHHH
Confidence 0 0111122235567999999988764
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-37 Score=278.47 Aligned_cols=226 Identities=19% Similarity=0.213 Sum_probs=176.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHh---ccCCCceEEEEccCCCHHHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA---GMAKENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l---~~~~~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
.+++|++|||||++|||++++++|+++|+ +|++++|+.+..++..+++ ...+.++.++.||++|+++++++++++.
T Consensus 3 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (278)
T 1spx_A 3 RFAEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTL 81 (278)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHH
Confidence 46789999999999999999999999995 9999999988888777776 4445678999999999999999999999
Q ss_pred HcCCCCcEEEEccccCCCCCCCCCC----CHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCC-CCCCC
Q 018819 160 RSGRPLDVLVCNAAVYLPTAKEPTF----TAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG-NTNTL 234 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~~~~~~~~----~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~-~~~~~ 234 (350)
+.+|++|+||||||+... .++.+. +.++|++++++|+.|+++++++++|.|.+++ |+||++||..+ ..+
T Consensus 82 ~~~g~id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~---g~iv~isS~~~~~~~-- 155 (278)
T 1spx_A 82 GKFGKLDILVNNAGAAIP-DSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK---GEIVNISSIASGLHA-- 155 (278)
T ss_dssp HHHSCCCEEEECCC--------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCTTSSSSC--
T ss_pred HHcCCCCEEEECCCCCCC-cccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC---CeEEEEecccccccC--
Confidence 999999999999998644 556667 8999999999999999999999999997653 69999999987 532
Q ss_pred CCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccc
Q 018819 235 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (350)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~ 314 (350)
.++...|++||++++.+++.++.|+ .+.||+||+|+||+|+|++..
T Consensus 156 ---------------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~ 201 (278)
T 1spx_A 156 ---------------------------------TPDFPYYSIAKAAIDQYTRNTAIDL-IQHGIRVNSISPGLVATGFGS 201 (278)
T ss_dssp ---------------------------------CTTSHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBCCCC--
T ss_pred ---------------------------------CCCccHHHHHHHHHHHHHHHHHHHH-HhcCcEEEEEecCcccCcccc
Confidence 3567899999999999999999999 567999999999999998753
Q ss_pred ccchhhHHh--h---hhhhH-HhhhcCccchhhhhhhcccc
Q 018819 315 REHIPLFRL--L---FPPFQ-KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 315 ~~~~~~~~~--~---~~~~~-~~~~~~~~s~~~~a~~i~~~ 349 (350)
....+.... . ...+. .....++.+|+|+|+.++++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~v~~l 242 (278)
T 1spx_A 202 AMGMPEETSKKFYSTMATMKECVPAGVMGQPQDIAEVIAFL 242 (278)
T ss_dssp ------------HHHHHHHHHHCTTSSCBCHHHHHHHHHHH
T ss_pred ccccCchhhhhhhHHHHHHHhcCCCcCCCCHHHHHHHHHHH
Confidence 211110000 0 01111 11234578999999988653
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-37 Score=279.72 Aligned_cols=227 Identities=17% Similarity=0.160 Sum_probs=185.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCC---ceEEEEccCCCHHHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE---NYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~---~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
.+++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++...+. ++.++.||++|+++++++++++.
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 81 (280)
T 1xkq_A 3 RFSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTL 81 (280)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHH
Confidence 46889999999999999999999999995 899999998888887777765555 78999999999999999999999
Q ss_pred HcCCCCcEEEEccccCCCCCC----CCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCC
Q 018819 160 RSGRPLDVLVCNAAVYLPTAK----EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLA 235 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~~~~----~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~ 235 (350)
+.++++|+||||||+... .+ +.+.+.++|++++++|+.++++++++++|.|.+++ |+||++||..+..+.
T Consensus 82 ~~~g~iD~lv~nAg~~~~-~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~---g~iv~isS~~~~~~~-- 155 (280)
T 1xkq_A 82 KQFGKIDVLVNNAGAAIP-DAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK---GEIVNVSSIVAGPQA-- 155 (280)
T ss_dssp HHHSCCCEEEECCCCCCC-CTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCGGGSSSC--
T ss_pred HhcCCCCEEEECCCCCCC-CCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC---CcEEEecCccccCCC--
Confidence 999999999999998644 44 66789999999999999999999999999997653 699999999876421
Q ss_pred CCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccc
Q 018819 236 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 315 (350)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~ 315 (350)
.++...|++||++++.++++++.|+ .+.||+||+|+||+|+|++...
T Consensus 156 --------------------------------~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~ 202 (280)
T 1xkq_A 156 --------------------------------QPDFLYYAIAKAALDQYTRSTAIDL-AKFGIRVNSVSPGMVETGFTNA 202 (280)
T ss_dssp --------------------------------CCSSHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEECCBCSSHHHH
T ss_pred --------------------------------CCcccHHHHHHHHHHHHHHHHHHHh-ccCCeEEEEEeeCcCcCCcccc
Confidence 1567899999999999999999999 6779999999999999987532
Q ss_pred cc--hh----hHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 316 EH--IP----LFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 316 ~~--~~----~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.. .. ...............++.+|+|+|+.++++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~pedvA~~v~~l 242 (280)
T 1xkq_A 203 MGMPDQASQKFYNFMASHKECIPIGAAGKPEHIANIILFL 242 (280)
T ss_dssp TTCCHHHHHHHHHHHHHCTTTCTTSSCBCHHHHHHHHHHH
T ss_pred cccccccccchHHHHHHHHcCCCCCCCCCHHHHHHHHHHh
Confidence 10 00 000000000011234578999999988754
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=280.46 Aligned_cols=226 Identities=23% Similarity=0.217 Sum_probs=185.3
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEec-ChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r-~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
.+++++|++|||||++|||+++|++|+++|+ +|++++| +.+..+...++++..+.++.++.||++|+++++++++++.
T Consensus 24 ~m~l~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 102 (271)
T 4iin_A 24 AMQFTGKNVLITGASKGIGAEIAKTLASMGL-KVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIV 102 (271)
T ss_dssp CCCCSCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred hcccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHH
Confidence 3568899999999999999999999999996 8888888 4555666666776677889999999999999999999999
Q ss_pred HcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCC
Q 018819 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (350)
+.++++|+||||||+... ..+.+.+.++|++.+++|+.|++++++.++|.|.+++ .|+||++||..+..+
T Consensus 103 ~~~g~id~li~nAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~~------- 172 (271)
T 4iin_A 103 QSDGGLSYLVNNAGVVRD-KLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSR--FGSVVNVASIIGERG------- 172 (271)
T ss_dssp HHHSSCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHHHC-------
T ss_pred HhcCCCCEEEECCCcCCC-cccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcC--CCEEEEEechhhcCC-------
Confidence 999999999999999754 6677889999999999999999999999999998765 479999999988753
Q ss_pred CCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchh
Q 018819 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (350)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~ 319 (350)
.++...|++||++++.+++.++.|+ .++||+|++|+||+|+|++.......
T Consensus 173 ----------------------------~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~~~~~ 223 (271)
T 4iin_A 173 ----------------------------NMGQTNYSASKGGMIAMSKSFAYEG-ALRNIRFNSVTPGFIETDMNANLKDE 223 (271)
T ss_dssp ----------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-HTTTEEEEEEEECSBCCC--------
T ss_pred ----------------------------CCCchHhHHHHHHHHHHHHHHHHHH-HHhCcEEEEEEeCcccCCchhhhcHH
Confidence 3577899999999999999999999 66799999999999999875321111
Q ss_pred hHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
. ...........++.+|+|+|+.++++
T Consensus 224 ~---~~~~~~~~~~~~~~~p~dvA~~i~~l 250 (271)
T 4iin_A 224 L---KADYVKNIPLNRLGSAKEVAEAVAFL 250 (271)
T ss_dssp -------CGGGCTTCSCBCHHHHHHHHHHH
T ss_pred H---HHHHHhcCCcCCCcCHHHHHHHHHHH
Confidence 0 01111122235678999999988754
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-37 Score=278.65 Aligned_cols=227 Identities=22% Similarity=0.254 Sum_probs=187.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|++|||||++|||+++|+.|+++|+ +|++++|+.+..++..+++...+.++.++.||++|+++++++++++.+.+
T Consensus 19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 97 (277)
T 2rhc_B 19 TQDSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERY 97 (277)
T ss_dssp CTTSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999995 89999999888877777776656788999999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHH--HhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDD--LKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~--~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
+++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|. |.+++ .|+||++||..+..+
T Consensus 98 g~iD~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~--~g~iv~isS~~~~~~-------- 166 (277)
T 2rhc_B 98 GPVDVLVNNAGRPGG-GATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERG--TGRIVNIASTGGKQG-------- 166 (277)
T ss_dssp CSCSEEEECCCCCCC-SCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHT--EEEEEEECCGGGTSC--------
T ss_pred CCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcC--CeEEEEECccccccC--------
Confidence 999999999998643 66778899999999999999999999999998 87654 479999999987643
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch--
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-- 318 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~-- 318 (350)
.++...|++||++++.+++.++.|+ .+.||+||+|+||+|+|++......
T Consensus 167 ---------------------------~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~~ 218 (277)
T 2rhc_B 167 ---------------------------VVHAAPYSASKHGVVGFTKALGLEL-ARTGITVNAVCPGFVETPMAASVREHY 218 (277)
T ss_dssp ---------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-TTTEEEEEEEEECSBCSHHHHHHHHHH
T ss_pred ---------------------------CCCCccHHHHHHHHHHHHHHHHHHH-HHhCcEEEEEecCcCcCchhhhhhhhc
Confidence 3567899999999999999999999 6779999999999999986422100
Q ss_pred -hhH----HhhhhhhH-HhhhcCccchhhhhhhcccc
Q 018819 319 -PLF----RLLFPPFQ-KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 -~~~----~~~~~~~~-~~~~~~~~s~~~~a~~i~~~ 349 (350)
+.. ......+. .....++.+|+|+|+.++++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~p~~r~~~~~dvA~~v~~l 255 (277)
T 2rhc_B 219 SDIWEVSTEEAFDRITARVPIGRYVQPSEVAEMVAYL 255 (277)
T ss_dssp HHHHTCCHHHHHHHHHHHSTTSSCBCHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 000 00001111 11235578999999988754
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-37 Score=278.59 Aligned_cols=224 Identities=15% Similarity=0.225 Sum_probs=182.4
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccC--CCceEEEEccCCCHHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~--~~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
+.+++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++... +..+.++.+|++|+++++++++
T Consensus 6 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 81 (267)
T 3t4x_A 6 MQLKGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIE--- 81 (267)
T ss_dssp CCCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHH---
T ss_pred cccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHH---
Confidence 467899999999999999999999999995 8999999998888887777543 4568889999999999887765
Q ss_pred HcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCC
Q 018819 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (350)
+++++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||..+..+
T Consensus 82 -~~g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~~------- 150 (267)
T 3t4x_A 82 -KYPKVDILINNLGIFEP-VEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERK--EGRVIFIASEAAIMP------- 150 (267)
T ss_dssp -HCCCCSEEEECCCCCCC-CCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--EEEEEEECCGGGTSC-------
T ss_pred -hcCCCCEEEECCCCCCC-CccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CCEEEEEcchhhccC-------
Confidence 46899999999999754 6777899999999999999999999999999998765 579999999988753
Q ss_pred CCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccc--
Q 018819 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH-- 317 (350)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~-- 317 (350)
.++...|++||++++.+++.++.|+ .++||+||+|+||+|+|++.....
T Consensus 151 ----------------------------~~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~~ 201 (267)
T 3t4x_A 151 ----------------------------SQEMAHYSATKTMQLSLSRSLAELT-TGTNVTVNTIMPGSTLTEGVETMLNS 201 (267)
T ss_dssp ----------------------------CTTCHHHHHHHHHHHHHHHHHHHHT-TTSEEEEEEEEECCBCCHHHHHHHHH
T ss_pred ----------------------------CCcchHHHHHHHHHHHHHHHHHHHh-CCCCeEEEEEeCCeecCccHHHHHhh
Confidence 3677899999999999999999999 677999999999999998642110
Q ss_pred -h-----hhHHhhhhhhHHh----hhcCccchhhhhhhcccc
Q 018819 318 -I-----PLFRLLFPPFQKY----ITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 318 -~-----~~~~~~~~~~~~~----~~~~~~s~~~~a~~i~~~ 349 (350)
. ............. ...++.+|||+|+.+++|
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~pedvA~~v~fL 243 (267)
T 3t4x_A 202 LYPNEQLTIEEAEKRFMKENRPTSIIQRLIRPEEIAHLVTFL 243 (267)
T ss_dssp SSTTSCCCHHHHHHHHHHHHCTTCSSCSCBCTHHHHHHHHHH
T ss_pred cCcccCCCHHHHHHHHhhccCCcccccCccCHHHHHHHHHHH
Confidence 0 0000000011111 125678999999988764
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=279.19 Aligned_cols=218 Identities=18% Similarity=0.206 Sum_probs=177.7
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
...+++|++|||||++|||+++|++|+++|+ +|++++|+.+.. ...+..++||++|+++++++++++.+
T Consensus 9 ~~~~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~----------~~~~~~~~~Dv~~~~~v~~~~~~~~~ 77 (269)
T 3vtz_A 9 MEEFTDKVAIVTGGSSGIGLAVVDALVRYGA-KVVSVSLDEKSD----------VNVSDHFKIDVTNEEEVKEAVEKTTK 77 (269)
T ss_dssp -CTTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCC--C----------TTSSEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCchhc----------cCceeEEEecCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999999999996 899999986442 12467889999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
.++++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||..+..+
T Consensus 78 ~~g~iD~lv~nAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~~-------- 146 (269)
T 3vtz_A 78 KYGRIDILVNNAGIEQY-SPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIG--HGSIINIASVQSYAA-------- 146 (269)
T ss_dssp HHSCCCEEEECCCCCCC-CCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTSB--------
T ss_pred HcCCCCEEEECCCcCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CCEEEEECchhhccC--------
Confidence 99999999999998654 6777889999999999999999999999999998765 579999999988753
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch--
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-- 318 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~-- 318 (350)
.++...|++||++++.+++.++.|+ .+ ||+||+|+||+|+|++......
T Consensus 147 ---------------------------~~~~~~Y~asKaa~~~l~~~la~e~-~~-~i~vn~v~PG~v~T~~~~~~~~~~ 197 (269)
T 3vtz_A 147 ---------------------------TKNAAAYVTSKHALLGLTRSVAIDY-AP-KIRCNAVCPGTIMTPMVIKAAKME 197 (269)
T ss_dssp ---------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-TT-TEEEEEEEECSBCCHHHHHHHHHH
T ss_pred ---------------------------CCCChhHHHHHHHHHHHHHHHHHHh-cC-CCEEEEEEECCCcCcchhhhhhcc
Confidence 3577899999999999999999999 55 8999999999999987532110
Q ss_pred ------hhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 319 ------PLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ------~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
................++.+|+|+|+.+++|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L 234 (269)
T 3vtz_A 198 VGEDENAVERKIEEWGRQHPMGRIGRPEEVAEVVAFL 234 (269)
T ss_dssp HCCSTTHHHHHHHHHHHHSTTSSCBCHHHHHHHHHHH
T ss_pred ccccchhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 0011111111122345678999999988764
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=282.75 Aligned_cols=234 Identities=18% Similarity=0.210 Sum_probs=184.6
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC------------hhHHHHHHHHhccCCCceEEEEccCCCH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD------------FLKAERAAKSAGMAKENYTIMHLDLASL 148 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~------------~~~~~~~~~~l~~~~~~v~~~~~Dvs~~ 148 (350)
+..+++|++|||||++|||+++|++|+++|+ +|++++|+ .+..++...++...+.++.++.||++|+
T Consensus 5 m~~l~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 83 (287)
T 3pxx_A 5 MGRVQDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDR 83 (287)
T ss_dssp CCTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCH
T ss_pred ccccCCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCH
Confidence 4578999999999999999999999999996 89999887 6666777777766678899999999999
Q ss_pred HHHHHHHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccC
Q 018819 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (350)
Q Consensus 149 ~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~ 228 (350)
++++++++++.+.++++|+||||||+... . . +.+.++|++++++|+.|+++++++++|+|.+ .|+||++||..
T Consensus 84 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~-~-~-~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~----~g~iv~isS~~ 156 (287)
T 3pxx_A 84 AAVSRELANAVAEFGKLDVVVANAGICPL-G-A-HLPVQAFADAFDVDFVGVINTVHAALPYLTS----GASIITTGSVA 156 (287)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCC-C-T-TCCTHHHHHHHHHHTHHHHHHHHHHGGGCCT----TCEEEEECCHH
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCcCcc-c-C-cCCHHHHHHHhhhhhhhhHHHHHHHHHHhhc----CcEEEEeccch
Confidence 99999999999999999999999998654 2 3 4788999999999999999999999999843 47999999998
Q ss_pred CCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcc
Q 018819 229 GNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI 308 (350)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v 308 (350)
+..+... .+..+..+.++...|++||++++.+++.++.|+ .++||+||+|+||+|
T Consensus 157 ~~~~~~~------------------------~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~vn~v~PG~v 211 (287)
T 3pxx_A 157 GLIAAAQ------------------------PPGAGGPQGPGGAGYSYAKQLVDSYTLQLAAQL-APQSIRANVIHPTNV 211 (287)
T ss_dssp HHHHHHC------------------------CC-----CHHHHHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEESSB
T ss_pred hcccccc------------------------cccccccCCCccchHHHHHHHHHHHHHHHHHHH-hhcCcEEEEEecCcc
Confidence 7653200 000111223677899999999999999999999 677999999999999
Q ss_pred cCCcccccchhhHHhhh-----hh---------hHHhhhcCccchhhhhhhcccc
Q 018819 309 ATTGLFREHIPLFRLLF-----PP---------FQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 309 ~t~~~~~~~~~~~~~~~-----~~---------~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
+|++.... +..+... +. .......++.+|+|+|+.+++|
T Consensus 212 ~T~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~dva~~v~fL 264 (287)
T 3pxx_A 212 NTDMLNSA--PMYRQFRPDLEAPSRADALLAFPAMQAMPTPYVEASDISNAVCFL 264 (287)
T ss_dssp SSTTTSSH--HHHHHHCTTSSSCCHHHHHHHGGGGCSSSCSCBCHHHHHHHHHHH
T ss_pred cccccccc--chhhhhccccccchhHHHHhhhhhhcccCCCCCCHHHHHhhHhee
Confidence 99976421 1100000 00 0111115678999999988764
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-37 Score=274.36 Aligned_cols=225 Identities=20% Similarity=0.188 Sum_probs=184.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
+|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++...+.++.++.||++|+++++++++++.+.++++
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 80 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGF 80 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 57999999999999999999999995 89999999888887777776556788999999999999999999999999999
Q ss_pred cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcc
Q 018819 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (350)
|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++. .|+||++||..+..+
T Consensus 81 d~lv~nAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~------------- 145 (256)
T 1geg_A 81 DVIVNNAGVAPS-TPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGH-GGKIINACSQAGHVG------------- 145 (256)
T ss_dssp CEEEECCCCCCC-BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-CEEEEEECCGGGTSC-------------
T ss_pred CEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CCEEEEECchhhcCC-------------
Confidence 999999998643 56778899999999999999999999999999976431 269999999988753
Q ss_pred ccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH---
Q 018819 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR--- 322 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~--- 322 (350)
.++...|++||++++.+++.++.|+ .+.||+||+|+||+|+|++.......+..
T Consensus 146 ----------------------~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~ 202 (256)
T 1geg_A 146 ----------------------NPELAVYSSSKFAVRGLTQTAARDL-APLGITVNGYCPGIVKTPMWAEIDRQVSEAAG 202 (256)
T ss_dssp ----------------------CTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBSSHHHHHHHHHHHHHHT
T ss_pred ----------------------CCCchhHHHHHHHHHHHHHHHHHHH-HHcCeEEEEEEECCCccchhhhhhhhcccccc
Confidence 2567899999999999999999999 56799999999999999864221000000
Q ss_pred ----hhhhhhHH-hhhcCccchhhhhhhcccc
Q 018819 323 ----LLFPPFQK-YITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 ----~~~~~~~~-~~~~~~~s~~~~a~~i~~~ 349 (350)
.....+.. ....++.+|+|+|+.++++
T Consensus 203 ~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l 234 (256)
T 1geg_A 203 KPLGYGTAEFAKRITLGRLSEPEDVAACVSYL 234 (256)
T ss_dssp CCTTHHHHHHHTTCTTCSCBCHHHHHHHHHHH
T ss_pred CChHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 00001111 1234578999999988754
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-37 Score=276.30 Aligned_cols=224 Identities=20% Similarity=0.229 Sum_probs=185.7
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEE-EEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHI-IMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~V-i~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
..+.+|++|||||++|||+++|++|+++|+ +| ++..|+.+..++..+++...+.++.++.||++|+++++++++++.+
T Consensus 22 ~~l~~k~vlVTGas~gIG~~la~~l~~~G~-~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 100 (267)
T 4iiu_A 22 SNAMSRSVLVTGASKGIGRAIARQLAADGF-NIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIA 100 (267)
T ss_dssp ---CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 356889999999999999999999999996 66 5567888888888888877778899999999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHh-cCCCCCCeEEEEeccCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLK-QSDYPSKRLIIVGSITGNTNTLAGNVP 239 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~-~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (350)
.++++|+||||||+... ..+.+.+.++|++.+++|+.|++++++.+++.|. +++ .|+||++||.++..+
T Consensus 101 ~~g~id~li~nAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~--~g~iv~isS~~~~~~------- 170 (267)
T 4iiu_A 101 QHGAWYGVVSNAGIARD-AAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQ--GGRIITLSSVSGVMG------- 170 (267)
T ss_dssp HHCCCSEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS--CEEEEEECCHHHHHC-------
T ss_pred HhCCccEEEECCCCCCC-CccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--CcEEEEEcchHhccC-------
Confidence 99999999999999754 6777889999999999999999999999998886 333 579999999988753
Q ss_pred CCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchh
Q 018819 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (350)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~ 319 (350)
.+++..|++||++++.+++.++.|+ .+.||+|++|+||+|+|++..... .
T Consensus 171 ----------------------------~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~-~ 220 (267)
T 4iiu_A 171 ----------------------------NRGQVNYSAAKAGIIGATKALAIEL-AKRKITVNCIAPGLIDTGMIEMEE-S 220 (267)
T ss_dssp ----------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSTTCCCCH-H
T ss_pred ----------------------------CCCCchhHHHHHHHHHHHHHHHHHH-hhcCeEEEEEEEeeecCCcccccH-H
Confidence 3577899999999999999999999 567999999999999999764321 1
Q ss_pred hHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
............++.+|+|+|+.++++
T Consensus 221 ---~~~~~~~~~p~~~~~~~edva~~~~~L 247 (267)
T 4iiu_A 221 ---ALKEAMSMIPMKRMGQAEEVAGLASYL 247 (267)
T ss_dssp ---HHHHHHHTCTTCSCBCHHHHHHHHHHH
T ss_pred ---HHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 111111222335678999999988754
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-37 Score=274.35 Aligned_cols=224 Identities=19% Similarity=0.233 Sum_probs=181.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
+++|++|||||++|||+++|++|+++|+ +|++++|+.+ ++..+++...+.++.++.+|++|+++++++++++.+.++
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~--~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 78 (255)
T 2q2v_A 2 LKGKTALVTGSTSGIGLGIAQVLARAGA-NIVLNGFGDP--APALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFG 78 (255)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEECSSCC--HHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCch--HHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 5789999999999999999999999995 8999999865 444455555566789999999999999999999999999
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCC
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (350)
++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||.++..+
T Consensus 79 ~id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~~----------- 144 (255)
T 2q2v_A 79 GVDILVNNAGIQHV-APVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARN--WGRIINIASVHGLVG----------- 144 (255)
T ss_dssp SCSEEEECCCCCCC-BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCGGGTSC-----------
T ss_pred CCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEEcCchhccC-----------
Confidence 99999999998643 5677889999999999999999999999999998765 479999999988753
Q ss_pred ccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHh
Q 018819 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL 323 (350)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~ 323 (350)
.++...|++||++++.+++.++.|+ .+.||+||+|+||+|+|++...........
T Consensus 145 ------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~ 199 (255)
T 2q2v_A 145 ------------------------STGKAAYVAAKHGVVGLTKVVGLET-ATSNVTCNAICPGWVLTPLVQKQIDDRAAN 199 (255)
T ss_dssp ------------------------CTTBHHHHHHHHHHHHHHHHHHHHT-TTSSEEEEEEEESSBCCHHHHHHHHHHHHH
T ss_pred ------------------------CCCchhHHHHHHHHHHHHHHHHHHh-cccCcEEEEEeeCCCcCcchhhhccccccc
Confidence 3567899999999999999999999 677999999999999998643210000000
Q ss_pred ---hh---hhh--HHhhhcCccchhhhhhhcccc
Q 018819 324 ---LF---PPF--QKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 324 ---~~---~~~--~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.. ..+ ......++.+|+|+|+.++++
T Consensus 200 ~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~~~~l 233 (255)
T 2q2v_A 200 GGDPLQAQHDLLAEKQPSLAFVTPEHLGELVLFL 233 (255)
T ss_dssp TCCHHHHHHHHHTTTCTTCCCBCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHhccCCCCCCcCHHHHHHHHHHH
Confidence 00 000 011234578999999988754
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-37 Score=281.79 Aligned_cols=195 Identities=16% Similarity=0.196 Sum_probs=170.2
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCC--ceEEEEccCCCHHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE--NYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~--~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
+++++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++...+. ++.++.+|++|+++++++++.+.
T Consensus 4 ~~l~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 82 (319)
T 3ioy_A 4 KDFAGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVE 82 (319)
T ss_dssp CCCTTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 357899999999999999999999999995 899999999888888877765444 79999999999999999999999
Q ss_pred HcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcC----CCCCCeEEEEeccCCCCCCCC
Q 018819 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQS----DYPSKRLIIVGSITGNTNTLA 235 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~----~~~~g~iV~vSS~~~~~~~~~ 235 (350)
+.++++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.++ ..+.|+||++||.++..+
T Consensus 83 ~~~g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~~--- 158 (319)
T 3ioy_A 83 ARFGPVSILCNNAGVNLF-QPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLA--- 158 (319)
T ss_dssp HHTCCEEEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTCC---
T ss_pred HhCCCCCEEEECCCcCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccccccC---
Confidence 999999999999998644 678889999999999999999999999999999764 112579999999998753
Q ss_pred CCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccc
Q 018819 236 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (350)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~ 314 (350)
.++...|++||+++++|++.++.|+ .+.||+|++|+||+|+|++..
T Consensus 159 --------------------------------~~~~~~Y~aSKaal~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~ 204 (319)
T 3ioy_A 159 --------------------------------AGSPGIYNTTKFAVRGLSESLHYSL-LKYEIGVSVLCPGLVKSYIYA 204 (319)
T ss_dssp --------------------------------CSSSHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEECCCCBC-----
T ss_pred --------------------------------CCCCHHHHHHHHHHHHHHHHHHHHh-hhcCCEEEEEEcCeEccCccc
Confidence 3577899999999999999999999 567999999999999998764
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=284.06 Aligned_cols=219 Identities=21% Similarity=0.199 Sum_probs=184.0
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhH-------HHHHHHHhccCCCceEEEEccCCCHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK-------AERAAKSAGMAKENYTIMHLDLASLDSVRQ 153 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~-------~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~ 153 (350)
+..+++|++|||||++|||+++|++|+++|+ +|++++|+.+. +++..+++...+.++.++.||++|++++++
T Consensus 40 ~~~l~gk~vlVTGas~GIG~aia~~La~~Ga-~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~ 118 (346)
T 3kvo_A 40 TGRLAGCTVFITGASRGIGKAIALKAAKDGA-NIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISA 118 (346)
T ss_dssp CSTTTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHH
T ss_pred CCCCCCCEEEEeCCChHHHHHHHHHHHHCCC-EEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHH
Confidence 3568999999999999999999999999996 89999998653 556666676677889999999999999999
Q ss_pred HHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCC
Q 018819 154 FVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNT 233 (350)
Q Consensus 154 ~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~ 233 (350)
+++++.+.+|++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|+|++++ .|+||++||..+..+.
T Consensus 119 ~~~~~~~~~g~iDilVnnAG~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~--~g~IV~iSS~~~~~~~ 195 (346)
T 3kvo_A 119 AVEKAIKKFGGIDILVNNASAISL-TNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSK--VAHILNISPPLNLNPV 195 (346)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCC-CCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCS--SCEEEEECCCCCCCGG
T ss_pred HHHHHHHHcCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC--CCEEEEECCHHHcCCC
Confidence 999999999999999999999754 6788899999999999999999999999999998875 5799999999876431
Q ss_pred CCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCc-ccCCc
Q 018819 234 LAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGC-IATTG 312 (350)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~-v~t~~ 312 (350)
+.++...|++||++++.+++.++.|+ . .||+||+|+||+ |+|++
T Consensus 196 ---------------------------------~~~~~~~Y~aSKaal~~l~~~la~e~-~-~gIrvn~v~PG~~i~T~~ 240 (346)
T 3kvo_A 196 ---------------------------------WFKQHCAYTIAKYGMSMYVLGMAEEF-K-GEIAVNALWPKTAIHTAA 240 (346)
T ss_dssp ---------------------------------GTSSSHHHHHHHHHHHHHHHHHHHHT-T-TTCEEEEEECSBCBCCHH
T ss_pred ---------------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-c-CCcEEEEEeCCCccccHH
Confidence 13577899999999999999999999 4 799999999995 88875
Q ss_pred ccccchhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 313 LFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
... ... .....++.+|+|+|+.++++
T Consensus 241 ~~~-------~~~----~~~~~r~~~pedvA~~v~~L 266 (346)
T 3kvo_A 241 MDM-------LGG----PGIESQCRKVDIIADAAYSI 266 (346)
T ss_dssp HHH-------HCC------CGGGCBCTHHHHHHHHHH
T ss_pred HHh-------hcc----ccccccCCCHHHHHHHHHHH
Confidence 311 000 01123467889988887654
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-37 Score=275.47 Aligned_cols=221 Identities=19% Similarity=0.154 Sum_probs=181.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
++++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++ +.++.++.+|++|+++++++++++.+.+
T Consensus 2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (254)
T 1hdc_A 2 DLSGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATAREL---GDAARYQHLDVTIEEDWQRVVAYAREEF 77 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT---GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999999999995 8999999988777766655 4578899999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|+||||||+... .++.+.+.++|++++++|+.|++++++.++|.|.+++ .|+||++||..+..+
T Consensus 78 g~iD~lv~nAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~~---------- 144 (254)
T 1hdc_A 78 GSVDGLVNNAGISTG-MFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG--GGSIVNISSAAGLMG---------- 144 (254)
T ss_dssp SCCCEEEECCCCCCC-SCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTSC----------
T ss_pred CCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CCEEEEECchhhccC----------
Confidence 999999999998643 5677889999999999999999999999999998764 479999999988753
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.++...|++||++++.+++.++.|+ .++||+||+|+||+|+|++.... .+ .
T Consensus 145 -------------------------~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~-~~--~ 195 (254)
T 1hdc_A 145 -------------------------LALTSSYGASKWGVRGLSKLAAVEL-GTDRIRVNSVHPGMTYTPMTAET-GI--R 195 (254)
T ss_dssp -------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHHH-TC--C
T ss_pred -------------------------CCCchhHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecccCcCcccccc-ch--h
Confidence 3567899999999999999999999 56799999999999999864220 00 0
Q ss_pred hhhhhhHHhhhcCcc-chhhhhhhcccc
Q 018819 323 LLFPPFQKYITKGYV-SEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~~~~~~~~~-s~~~~a~~i~~~ 349 (350)
............++. +|+|+|+.++++
T Consensus 196 ~~~~~~~~~p~~~~~~~~~dvA~~v~~l 223 (254)
T 1hdc_A 196 QGEGNYPNTPMGRVGNEPGEIAGAVVKL 223 (254)
T ss_dssp CSTTSCTTSTTSSCB-CHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 000000011123456 899999887653
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=274.10 Aligned_cols=217 Identities=19% Similarity=0.187 Sum_probs=178.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++. .++.++.||++|+++++++++++.+.+
T Consensus 3 ~l~~k~vlITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~~~ 78 (263)
T 2a4k_A 3 RLSGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALE---AEAIAVVADVSDPKAVEAVFAEALEEF 78 (263)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCC---SSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc---CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46889999999999999999999999995 99999999888777766654 468899999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|+||||||+... .++.+.+.++|++++++|+.|++++++++.|.| ++ .|+||++||..+. +
T Consensus 79 g~iD~lvnnAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~---~g~iv~isS~~~~-~---------- 142 (263)
T 2a4k_A 79 GRLHGVAHFAGVAHS-ALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVL-EE---GGSLVLTGSVAGL-G---------- 142 (263)
T ss_dssp SCCCEEEEGGGGTTT-TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-CT---TCEEEEECCCTTC-C----------
T ss_pred CCCcEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHH-hc---CCEEEEEecchhc-C----------
Confidence 999999999998644 677788999999999999999999999999999 43 3799999999876 3
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.++...|++||++++.+++.++.|+ .+.||+||+|+||+|+|++.... .+.
T Consensus 143 -------------------------~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~-~~~-- 193 (263)
T 2a4k_A 143 -------------------------AFGLAHYAAGKLGVVGLARTLALEL-ARKGVRVNVLLPGLIQTPMTAGL-PPW-- 193 (263)
T ss_dssp -------------------------HHHHHHHHHCSSHHHHHHHHHHHHH-TTTTCEEEEEEECSBCCGGGTTS-CHH--
T ss_pred -------------------------CCCcHHHHHHHHHHHHHHHHHHHHh-hhhCcEEEEEEeCcCcCchhhhc-CHH--
Confidence 2577899999999999999999999 67799999999999999875321 111
Q ss_pred hhhhhhH-HhhhcCccchhhhhhhcccc
Q 018819 323 LLFPPFQ-KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~-~~~~~~~~s~~~~a~~i~~~ 349 (350)
. ...+. .....++.+|+|+|+.++++
T Consensus 194 ~-~~~~~~~~p~~~~~~p~dvA~~v~~l 220 (263)
T 2a4k_A 194 A-WEQEVGASPLGRAGRPEEVAQAALFL 220 (263)
T ss_dssp H-HHHHHHTSTTCSCBCHHHHHHHHHHH
T ss_pred H-HHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 0 01111 11234578999999988753
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=272.48 Aligned_cols=221 Identities=20% Similarity=0.224 Sum_probs=179.9
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+.+++|++|||||++|||+++|++|+++|+ +|++++|+.+. ++..+++. + .++.||++|+++++++++++.+.
T Consensus 2 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~-~~~~~~~~----~-~~~~~D~~~~~~~~~~~~~~~~~ 74 (256)
T 2d1y_A 2 GLFAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEG-KEVAEAIG----G-AFFQVDLEDERERVRFVEEAAYA 74 (256)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTH-HHHHHHHT----C-EEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhH-HHHHHHhh----C-CEEEeeCCCHHHHHHHHHHHHHH
Confidence 356889999999999999999999999995 89999998776 66655553 3 78899999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||.++..+
T Consensus 75 ~g~iD~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--~g~iv~isS~~~~~~--------- 142 (256)
T 2d1y_A 75 LGRVDVLVNNAAIAAP-GSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVG--GGAIVNVASVQGLFA--------- 142 (256)
T ss_dssp HSCCCEEEECCCCCCC-BCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT--CEEEEEECCGGGTSB---------
T ss_pred cCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEEccccccCC---------
Confidence 9999999999998644 6777889999999999999999999999999998765 479999999988753
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccc---h
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH---I 318 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~---~ 318 (350)
.++...|++||++++.+++.++.|+ .+.||+||+|+||+++|++..... .
T Consensus 143 --------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~ 195 (256)
T 2d1y_A 143 --------------------------EQENAAYNASKGGLVNLTRSLALDL-APLRIRVNAVAPGAIATEAVLEAIALSP 195 (256)
T ss_dssp --------------------------CTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHHHHC---
T ss_pred --------------------------CCCChhHHHHHHHHHHHHHHHHHHH-hhcCeEEEEEeeCCccCchhhhcccccc
Confidence 2567899999999999999999999 567999999999999998642200 0
Q ss_pred hhHHhhhhhhH-HhhhcCccchhhhhhhcccc
Q 018819 319 PLFRLLFPPFQ-KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ~~~~~~~~~~~-~~~~~~~~s~~~~a~~i~~~ 349 (350)
..... ...+. .....++.+|+|+|+.++++
T Consensus 196 ~~~~~-~~~~~~~~~~~~~~~~~dvA~~~~~l 226 (256)
T 2d1y_A 196 DPERT-RRDWEDLHALRRLGKPEEVAEAVLFL 226 (256)
T ss_dssp ------CHHHHTTSTTSSCBCHHHHHHHHHHH
T ss_pred CCHHH-HHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 00000 00111 11224578999999988753
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-37 Score=277.27 Aligned_cols=222 Identities=20% Similarity=0.267 Sum_probs=177.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.++ |++|||||++|||+++|++|+++|+ +|++++|+.+.+++..+++... .++.++.||++|+++++++++++.+.+
T Consensus 19 ~~~-k~vlVTGas~gIG~aia~~La~~G~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 95 (272)
T 2nwq_A 19 HMS-STLFITGATSGFGEACARRFAEAGW-SLVLTGRREERLQALAGELSAK-TRVLPLTLDVRDRAAMSAAVDNLPEEF 95 (272)
T ss_dssp --C-CEEEESSTTTSSHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTT-SCEEEEECCTTCHHHHHHHHHTCCGGG
T ss_pred CcC-cEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 456 8999999999999999999999995 8999999988888877777543 578899999999999999999998889
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCC-eEEEEeccCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSK-RLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g-~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
+++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|.+++ .| +||++||..+..+
T Consensus 96 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~--~g~~IV~isS~~~~~~--------- 164 (272)
T 2nwq_A 96 ATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHG--AGASIVNLGSVAGKWP--------- 164 (272)
T ss_dssp SSCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC--TTCEEEEECCGGGTSC---------
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCcEEEEeCCchhccC---------
Confidence 99999999999864336777889999999999999999999999999998764 47 9999999988743
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.++...|++||++++.+++.++.|+ .+.||+||+|+||+|+|++.........
T Consensus 165 --------------------------~~~~~~Y~asKaa~~~l~~~la~el-~~~gIrvn~v~PG~v~T~~~~~~~~~~~ 217 (272)
T 2nwq_A 165 --------------------------YPGSHVYGGTKAFVEQFSLNLRCDL-QGTGVRVTNLEPGLCESEFSLVRFGGDQ 217 (272)
T ss_dssp --------------------------CTTCHHHHHHHHHHHHHHHHHHTTC-TTSCCEEEEEEECSBC------------
T ss_pred --------------------------CCCCchHHHHHHHHHHHHHHHHHHh-CccCeEEEEEEcCCCcCcchhcccccch
Confidence 3567899999999999999999999 6779999999999999987532110000
Q ss_pred HhhhhhhHHhh-hcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQKYI-TKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~~~~-~~~~~s~~~~a~~i~~~ 349 (350)
. ...... .....+|+|+|+.++++
T Consensus 218 ~----~~~~~~~~~~~~~pedvA~~v~~l 242 (272)
T 2nwq_A 218 A----RYDKTYAGAHPIQPEDIAETIFWI 242 (272)
T ss_dssp ------------CCCCBCHHHHHHHHHHH
T ss_pred H----HHHHhhccCCCCCHHHHHHHHHHH
Confidence 0 001111 12357999999988754
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-37 Score=272.36 Aligned_cols=217 Identities=18% Similarity=0.272 Sum_probs=174.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
|++|||||++|||+++|++|+++|+ +|++++|+.+.+++..+++. .++.++.||++|+++++++++++.+.++++|
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 76 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKDELG---DNLYIAQLDVRNRAAIEEMLASLPAEWCNID 76 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC---TTEEEEECCTTCHHHHHHHHHTSCTTTCCCC
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc---CceEEEEcCCCCHHHHHHHHHHHHHhCCCCC
Confidence 5899999999999999999999995 89999999888777777664 4688999999999999999999988899999
Q ss_pred EEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccc
Q 018819 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (350)
Q Consensus 167 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (350)
+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||.++..+
T Consensus 77 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~~~~~-------------- 140 (248)
T 3asu_A 77 ILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERN--HGHIINIGSTAGSWP-------------- 140 (248)
T ss_dssp EEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCGGGTSC--------------
T ss_pred EEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CceEEEEccchhccC--------------
Confidence 9999999863335677889999999999999999999999999997654 479999999988743
Q ss_pred cccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCccc-CCcccccchhhHHhhh
Q 018819 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA-TTGLFREHIPLFRLLF 325 (350)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~-t~~~~~~~~~~~~~~~ 325 (350)
.++...|++||++++.++++++.|+ .+.||+||+|+||+|+ |++..........
T Consensus 141 ---------------------~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~gT~~~~~~~~~~~~--- 195 (248)
T 3asu_A 141 ---------------------YAGGNVYGATKAFVRQFSLNLRTDL-HGTAVRVTDIEPGLVGGTEFSNVRFKGDDG--- 195 (248)
T ss_dssp ---------------------CTTCHHHHHHHHHHHHHHHHHHHHT-TTSCCEEEEEEECSBCC----------------
T ss_pred ---------------------CCCCchHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEeccccccCcchhhcccCchH---
Confidence 3567899999999999999999999 6779999999999999 8864211000000
Q ss_pred hhhHHh-hhcCccchhhhhhhcccc
Q 018819 326 PPFQKY-ITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 326 ~~~~~~-~~~~~~s~~~~a~~i~~~ 349 (350)
..... ......+|+|+|+.++++
T Consensus 196 -~~~~~~~~~~~~~p~dvA~~v~~l 219 (248)
T 3asu_A 196 -KAEKTYQNTVALTPEDVSEAVWWV 219 (248)
T ss_dssp ----------CCBCHHHHHHHHHHH
T ss_pred -HHHHHHhccCCCCHHHHHHHHHHH
Confidence 00010 112346999999988754
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=276.28 Aligned_cols=228 Identities=18% Similarity=0.227 Sum_probs=182.7
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhH-HHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK-AERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~-~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
.+.+++|++|||||++|||+++|++|+++|+ +|++++|+.+. .++..+++...+.++.++.||++|.++++++++++.
T Consensus 24 ~~~~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 102 (283)
T 1g0o_A 24 SASLEGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAV 102 (283)
T ss_dssp GGCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHH
Confidence 3567899999999999999999999999995 89999888643 455556666566789999999999999999999999
Q ss_pred HcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCC
Q 018819 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (350)
+.++++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+ .|+||++||..+..+.
T Consensus 103 ~~~g~iD~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~----~g~iv~isS~~~~~~~------ 171 (283)
T 1g0o_A 103 KIFGKLDIVCSNSGVVSF-GHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEI----GGRLILMGSITGQAKA------ 171 (283)
T ss_dssp HHHSCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCT----TCEEEEECCGGGTCSS------
T ss_pred HHcCCCCEEEECCCcCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhc----CCeEEEEechhhccCC------
Confidence 999999999999998643 66778899999999999999999999999999832 4799999999876431
Q ss_pred CCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccc--
Q 018819 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH-- 317 (350)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~-- 317 (350)
.++...|++||++++.+++.++.|+ .+.||+||+|+||+|+|++.....
T Consensus 172 ----------------------------~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~ 222 (283)
T 1g0o_A 172 ----------------------------VPKHAVYSGSKGAIETFARCMAIDM-ADKKITVNVVAPGGIKTDMYHAVCRE 222 (283)
T ss_dssp ----------------------------CSSCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBSSHHHHHHGGG
T ss_pred ----------------------------CCCCcchHHHHHHHHHHHHHHHHHh-cccCeEEEEEecCcccchhhhhhhhh
Confidence 1247789999999999999999999 567999999999999998642210
Q ss_pred -hhhH----HhhhhhhHH---hhhcCccchhhhhhhcccc
Q 018819 318 -IPLF----RLLFPPFQK---YITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 318 -~~~~----~~~~~~~~~---~~~~~~~s~~~~a~~i~~~ 349 (350)
.+.. ......+.. ....++.+|+|+|+.++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l 262 (283)
T 1g0o_A 223 YIPNGENLSNEEVDEYAAVQWSPLRRVGLPIDIARVVCFL 262 (283)
T ss_dssp GSTTCTTCCHHHHHHHHHHHSCTTCSCBCHHHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHhhcCCCCCCCcCHHHHHHHHHHH
Confidence 0000 000011111 1234577999999988764
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-37 Score=273.82 Aligned_cols=226 Identities=19% Similarity=0.172 Sum_probs=178.3
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc-C
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS-G 162 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~-~ 162 (350)
+++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++...+.++.++.||++|+++++++++++.+. +
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~ 81 (260)
T 2qq5_A 3 MNGQVCVVTGASRGIGRGIALQLCKAGA-TVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQ 81 (260)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 5789999999999999999999999995 8999999988887777777655678899999999999999999999876 8
Q ss_pred CCCcEEEEccc--cC----CCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCC
Q 018819 163 RPLDVLVCNAA--VY----LPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236 (350)
Q Consensus 163 g~id~lv~~Ag--~~----~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~ 236 (350)
+++|+|||||| +. ....++.+.+.++|+.++++|+.+++++++.+.|.|.+++ .|+||++||..+..+
T Consensus 82 g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~~---- 155 (260)
T 2qq5_A 82 GRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAG--QGLIVVISSPGSLQY---- 155 (260)
T ss_dssp TCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGT--CCEEEEECCGGGTSC----
T ss_pred CCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcC--CcEEEEEcChhhcCC----
Confidence 99999999995 32 1235677888999999999999999999999999998765 479999999987642
Q ss_pred CCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccccc
Q 018819 237 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 316 (350)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~ 316 (350)
.+...|++||++++.+++.++.|+ .+.||+||+|+||+|+|++....
T Consensus 156 --------------------------------~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~~ 202 (260)
T 2qq5_A 156 --------------------------------MFNVPYGVGKAACDKLAADCAHEL-RRHGVSCVSLWPGIVQTELLKEH 202 (260)
T ss_dssp --------------------------------CSSHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEECCCSCTTTC---
T ss_pred --------------------------------CCCCchHHHHHHHHHHHHHHHHHh-ccCCeEEEEEecCccccHHHHHh
Confidence 235789999999999999999999 66799999999999999975321
Q ss_pred chhhHHhhhhhhH--HhhhcCccchhhhhhhcccc
Q 018819 317 HIPLFRLLFPPFQ--KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 317 ~~~~~~~~~~~~~--~~~~~~~~s~~~~a~~i~~~ 349 (350)
............. .....+..+|||+|+.+++|
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~pe~va~~v~~l 237 (260)
T 2qq5_A 203 MAKEEVLQDPVLKQFKSAFSSAETTELSGKCVVAL 237 (260)
T ss_dssp -------------------CHHHHHHHHHHHHHHH
T ss_pred hccccccchhHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 1100000000000 01112246899999888764
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-37 Score=274.77 Aligned_cols=217 Identities=16% Similarity=0.163 Sum_probs=179.7
Q ss_pred CccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHH
Q 018819 80 GKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 80 ~~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
.++.+++|++|||||++|||+++|+.|+++|+ +|++++|+.+.. ...++.++.||++|+++++++++++.
T Consensus 22 ~m~~~~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~---------~~~~~~~~~~Dv~d~~~v~~~~~~~~ 91 (260)
T 3un1_A 22 SMMRNQQKVVVITGASQGIGAGLVRAYRDRNY-RVVATSRSIKPS---------ADPDIHTVAGDISKPETADRIVREGI 91 (260)
T ss_dssp HHHHTTCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCCCC---------SSTTEEEEESCTTSHHHHHHHHHHHH
T ss_pred hhhCcCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhhc---------ccCceEEEEccCCCHHHHHHHHHHHH
Confidence 35678899999999999999999999999995 999999975432 12368899999999999999999999
Q ss_pred HcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCC
Q 018819 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (350)
+.+|++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||..+....
T Consensus 92 ~~~g~iD~lv~nAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~~~~~~------ 162 (260)
T 3un1_A 92 ERFGRIDSLVNNAGVFLA-KPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQG--SGHIVSITTSLVDQPM------ 162 (260)
T ss_dssp HHHSCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCTTTTSCB------
T ss_pred HHCCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CcEEEEEechhhccCC------
Confidence 999999999999999754 6777889999999999999999999999999998876 5799999998765321
Q ss_pred CCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchh
Q 018819 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (350)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~ 319 (350)
+..+...|++||++++.++++++.|+ .++||+||+|+||+|+|++.......
T Consensus 163 ---------------------------~~~~~~~Y~~sKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~t~~~~~~~~~ 214 (260)
T 3un1_A 163 ---------------------------VGMPSALASLTKGGLNAVTRSLAMEF-SRSGVRVNAVSPGVIKTPMHPAETHS 214 (260)
T ss_dssp ---------------------------TTCCCHHHHHHHHHHHHHHHHHHHHT-TTTTEEEEEEEECCBCCTTSCGGGHH
T ss_pred ---------------------------CCCccHHHHHHHHHHHHHHHHHHHHh-CcCCeEEEEEeecCCCCCCCCHHHHH
Confidence 12356789999999999999999999 67799999999999999976432111
Q ss_pred hHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
. ........++.+|+|+|+.++++
T Consensus 215 ~------~~~~~p~~r~~~~~dva~av~~L 238 (260)
T 3un1_A 215 T------LAGLHPVGRMGEIRDVVDAVLYL 238 (260)
T ss_dssp H------HHTTSTTSSCBCHHHHHHHHHHH
T ss_pred H------HhccCCCCCCcCHHHHHHHHHHh
Confidence 0 01112235677999999988754
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-37 Score=274.58 Aligned_cols=225 Identities=17% Similarity=0.199 Sum_probs=182.5
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccC--CCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~--~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
.+++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++... +.++.++.+|++|+++++++++++.+
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 82 (260)
T 2z1n_A 4 GIQGKLAVVTAGSSGLGFASALELARNGA-RLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARD 82 (260)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 46889999999999999999999999995 8999999988777776666432 33788999999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
.++ +|+||||||+... .++.+.+.++|++.+++|+.|+++++++++|.|.+++ .|+||++||..+..+
T Consensus 83 ~~g-id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~~-------- 150 (260)
T 2z1n_A 83 LGG-ADILVYSTGGPRP-GRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKG--WGRMVYIGSVTLLRP-------- 150 (260)
T ss_dssp TTC-CSEEEECCCCCCC-BCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTSC--------
T ss_pred hcC-CCEEEECCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEECchhhcCC--------
Confidence 998 9999999998643 5677889999999999999999999999999998764 479999999988743
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccccc----
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE---- 316 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~---- 316 (350)
.++...|++||++++.+++.++.|+ .+.||+||+|+||+|+|++....
T Consensus 151 ---------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~ 202 (260)
T 2z1n_A 151 ---------------------------WQDLALSNIMRLPVIGVVRTLALEL-APHGVTVNAVLPSLILTDRVRSLAEER 202 (260)
T ss_dssp ---------------------------CTTBHHHHHHTHHHHHHHHHHHHHH-GGGTEEEEEEEECHHHHCCCC------
T ss_pred ---------------------------CCCCchhHHHHHHHHHHHHHHHHHH-hhhCeEEEEEEECCcccchhhhhhhhh
Confidence 3567899999999999999999999 66799999999999999875310
Q ss_pred ----chhhHHhhhhhhH-HhhhcCccchhhhhhhcccc
Q 018819 317 ----HIPLFRLLFPPFQ-KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 317 ----~~~~~~~~~~~~~-~~~~~~~~s~~~~a~~i~~~ 349 (350)
..+.. .....+. .....++.+|+|+|+.++++
T Consensus 203 ~~~~~~~~~-~~~~~~~~~~p~~r~~~~~dva~~v~~l 239 (260)
T 2z1n_A 203 ARRSGITVE-EALKSMASRIPMGRVGKPEELASVVAFL 239 (260)
T ss_dssp ------------------CCTTSSCCCHHHHHHHHHHH
T ss_pred hcccCCcHH-HHHHHHHhcCCCCCccCHHHHHHHHHHH
Confidence 00100 0000111 11224567999999988754
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=274.48 Aligned_cols=228 Identities=15% Similarity=0.114 Sum_probs=180.9
Q ss_pred cCccccCCCEEEEEcCC--CchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHH
Q 018819 79 QGKKTLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVD 156 (350)
Q Consensus 79 ~~~~~l~~~~~lItGgs--~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~ 156 (350)
..|..+++|++|||||+ +|||+++|++|+++|+ +|++++|+. .++..+++.....++.++.||++|+++++++++
T Consensus 19 ~~M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~--~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~ 95 (280)
T 3nrc_A 19 SHMGFLAGKKILITGLLSNKSIAYGIAKAMHREGA-ELAFTYVGQ--FKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFV 95 (280)
T ss_dssp ---CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTC-EEEEEECTT--CHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHH
T ss_pred CcccccCCCEEEEECCCCCCCHHHHHHHHHHHcCC-EEEEeeCch--HHHHHHHHHHhcCCceEEEeecCCHHHHHHHHH
Confidence 44567899999999988 7899999999999996 899999986 223333333333468899999999999999999
Q ss_pred HHHHcCCCCcEEEEccccCCCC---CCCCC-CCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCC
Q 018819 157 TFRRSGRPLDVLVCNAAVYLPT---AKEPT-FTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTN 232 (350)
Q Consensus 157 ~~~~~~g~id~lv~~Ag~~~~~---~~~~~-~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~ 232 (350)
++.+.++++|+||||||+.... ..+.+ .+.++|++++++|+.++++++++++|.|.++ .|+||++||.++..+
T Consensus 96 ~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~---~g~iv~isS~~~~~~ 172 (280)
T 3nrc_A 96 ELGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNR---NASMVALTYIGAEKA 172 (280)
T ss_dssp HHHHHCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT---TCEEEEEECGGGTSC
T ss_pred HHHHHcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCeEEEEeccccccC
Confidence 9999999999999999986431 23334 7899999999999999999999999999865 379999999988753
Q ss_pred CCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 233 TLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
.++...|++||++++.+++.++.|+ .++||+|++|+||+|+|++
T Consensus 173 -----------------------------------~~~~~~Y~asKaal~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~ 216 (280)
T 3nrc_A 173 -----------------------------------MPSYNTMGVAKASLEATVRYTALAL-GEDGIKVNAVSAGPIKTLA 216 (280)
T ss_dssp -----------------------------------CTTTHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCCCCSG
T ss_pred -----------------------------------CCCchhhHHHHHHHHHHHHHHHHHH-HHcCcEEEEEeeccccchh
Confidence 3678899999999999999999999 6679999999999999987
Q ss_pred ccccchhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 313 LFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..... ................++.+|+|+|+.++++
T Consensus 217 ~~~~~-~~~~~~~~~~~~~p~~~~~~pedvA~~v~~l 252 (280)
T 3nrc_A 217 ASGIS-NFKKMLDYNAMVSPLKKNVDIMEVGNTVAFL 252 (280)
T ss_dssp GGGCT-THHHHHHHHHHHSTTCSCCCHHHHHHHHHHT
T ss_pred hhcCc-chHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 53321 1111111122222346678999999988765
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=272.14 Aligned_cols=226 Identities=12% Similarity=0.120 Sum_probs=183.8
Q ss_pred cccCCCEEEEEcCC--CchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCC-ceEEEEccCCCHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE-NYTIMHLDLASLDSVRQFVDTF 158 (350)
Q Consensus 82 ~~l~~~~~lItGgs--~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~-~v~~~~~Dvs~~~~v~~~~~~~ 158 (350)
+++++|++|||||+ +|||+++|++|+++|+ +|++++|+....+...+.....+. ++.++.||++|+++++++++++
T Consensus 3 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 81 (266)
T 3oig_A 3 FSLEGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASI 81 (266)
T ss_dssp SCCTTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHH
T ss_pred cccCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHH
Confidence 35789999999999 6699999999999996 899999986555544444444333 7899999999999999999999
Q ss_pred HHcCCCCcEEEEccccCCC---CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCC
Q 018819 159 RRSGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLA 235 (350)
Q Consensus 159 ~~~~g~id~lv~~Ag~~~~---~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~ 235 (350)
.+.++++|+||||||+... ...+.+.+.++|+..+++|+.++++++++++|.|.+ +|+||++||.++..+
T Consensus 82 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~----~g~iv~isS~~~~~~--- 154 (266)
T 3oig_A 82 KEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTE----GGSIVTLTYLGGELV--- 154 (266)
T ss_dssp HHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTT----CEEEEEEECGGGTSC---
T ss_pred HHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCC----CceEEEEeccccccc---
Confidence 9999999999999998642 256678899999999999999999999999998875 479999999988753
Q ss_pred CCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccc
Q 018819 236 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 315 (350)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~ 315 (350)
.++...|++||++++.|++.++.|+ .+.||+||+|+||+|+|++...
T Consensus 155 --------------------------------~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~ 201 (266)
T 3oig_A 155 --------------------------------MPNYNVMGVAKASLDASVKYLAADL-GKENIRVNSISAGPIRTLSAKG 201 (266)
T ss_dssp --------------------------------CTTTHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCCCSGGGTT
T ss_pred --------------------------------CCCcchhHHHHHHHHHHHHHHHHHH-hhcCcEEEEEecCccccccccc
Confidence 3678899999999999999999999 6779999999999999986543
Q ss_pred cchhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 316 EHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
. .+...............++.+|+|+|+.++++
T Consensus 202 ~-~~~~~~~~~~~~~~~~~~~~~p~dva~~v~~l 234 (266)
T 3oig_A 202 I-SDFNSILKDIEERAPLRRTTTPEEVGDTAAFL 234 (266)
T ss_dssp C-TTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHH
T ss_pred c-cchHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 2 11111111122223345678999999988764
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=275.68 Aligned_cols=225 Identities=16% Similarity=0.158 Sum_probs=179.0
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh-hHHHHHHHHhc-cCCCceEEEEccCCC----HHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-LKAERAAKSAG-MAKENYTIMHLDLAS----LDSVRQF 154 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~-~~~~~~~~~l~-~~~~~v~~~~~Dvs~----~~~v~~~ 154 (350)
..++++|++|||||++|||+++|+.|+++|+ +|++++|+. +..+++.+++. ..+.++.++.||++| +++++++
T Consensus 18 ~~~l~~k~~lVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~ 96 (288)
T 2x9g_A 18 GSHMEAPAAVVTGAAKRIGRAIAVKLHQTGY-RVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEI 96 (288)
T ss_dssp ----CCCEEEETTCSSHHHHHHHHHHHHHTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHH
T ss_pred CcCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHH
Confidence 3467899999999999999999999999995 899999997 77777777765 456689999999999 9999999
Q ss_pred HHHHHHcCCCCcEEEEccccCCCCCCC-----CC-----CCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCC----CCCe
Q 018819 155 VDTFRRSGRPLDVLVCNAAVYLPTAKE-----PT-----FTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY----PSKR 220 (350)
Q Consensus 155 ~~~~~~~~g~id~lv~~Ag~~~~~~~~-----~~-----~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~----~~g~ 220 (350)
++++.+.++++|+||||||+... .++ .+ .+.++|++++++|+.+++++++.++|.|.+++. ..|+
T Consensus 97 ~~~~~~~~g~iD~lvnnAG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~ 175 (288)
T 2x9g_A 97 INSCFRAFGRCDVLVNNASAFYP-TPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLS 175 (288)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCC-CCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEE
T ss_pred HHHHHHhcCCCCEEEECCCCCCC-CccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeE
Confidence 99999999999999999998654 445 56 788999999999999999999999999876431 0369
Q ss_pred EEEEeccCCCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEE
Q 018819 221 LIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAF 300 (350)
Q Consensus 221 iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v 300 (350)
||++||..+..+ .++...|++||++++.+++.++.|+ .+.||+|
T Consensus 176 iv~isS~~~~~~-----------------------------------~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~v 219 (288)
T 2x9g_A 176 IVNLCDAMVDQP-----------------------------------CMAFSLYNMGKHALVGLTQSAALEL-APYGIRV 219 (288)
T ss_dssp EEEECCTTTTSC-----------------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEE
T ss_pred EEEEecccccCC-----------------------------------CCCCchHHHHHHHHHHHHHHHHHHh-hccCeEE
Confidence 999999988743 3577899999999999999999999 5679999
Q ss_pred EEeeCCcccCCcccccchhhHHhhhhhhHH-hhhcCc-cchhhhhhhcccc
Q 018819 301 ASLYPGCIATTGLFREHIPLFRLLFPPFQK-YITKGY-VSEDEAGKRLAQV 349 (350)
Q Consensus 301 ~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~-~~~~~~-~s~~~~a~~i~~~ 349 (350)
|+|+||+|+|++ . ..+.. ...+.. ....++ .+|+|+|+.++++
T Consensus 220 n~v~PG~v~t~~-~--~~~~~---~~~~~~~~p~~r~~~~pedvA~~v~~l 264 (288)
T 2x9g_A 220 NGVAPGVSLLPV-A--MGEEE---KDKWRRKVPLGRREASAEQIADAVIFL 264 (288)
T ss_dssp EEEEESSCSCCT-T--SCHHH---HHHHHHTCTTTSSCCCHHHHHHHHHHH
T ss_pred EEEEeccccCcc-c--cChHH---HHHHHhhCCCCCCCCCHHHHHHHHHHH
Confidence 999999999997 2 11110 011111 122445 7999999988764
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=274.17 Aligned_cols=226 Identities=14% Similarity=0.107 Sum_probs=176.4
Q ss_pred ccccCCCEEEEEcCC--CchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 158 (350)
Q Consensus 81 ~~~l~~~~~lItGgs--~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~ 158 (350)
...+++|++|||||+ +|||+++|++|+++|+ +|++++|+....+.. +++.....++.++.||++|+++++++++++
T Consensus 9 ~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 86 (271)
T 3ek2_A 9 MGFLDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRI-TEFAAEFGSELVFPCDVADDAQIDALFASL 86 (271)
T ss_dssp CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHH-HHHHHHTTCCCEEECCTTCHHHHHHHHHHH
T ss_pred ccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHH-HHHHHHcCCcEEEECCCCCHHHHHHHHHHH
Confidence 446789999999999 9999999999999996 899999985443333 333222235889999999999999999999
Q ss_pred HHcCCCCcEEEEccccCCCC---CCCCC-CCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCC
Q 018819 159 RRSGRPLDVLVCNAAVYLPT---AKEPT-FTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTL 234 (350)
Q Consensus 159 ~~~~g~id~lv~~Ag~~~~~---~~~~~-~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~ 234 (350)
.++++++|+||||||+.... ..+.+ .+.++|++++++|+.++++++++++|.|.+ .|+||++||.++..+
T Consensus 87 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~----~g~iv~isS~~~~~~-- 160 (271)
T 3ek2_A 87 KTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSD----DASLLTLSYLGAERA-- 160 (271)
T ss_dssp HHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEE----EEEEEEEECGGGTSB--
T ss_pred HHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhcc----CceEEEEeccccccC--
Confidence 99999999999999986431 33444 899999999999999999999999999875 369999999988753
Q ss_pred CCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccc
Q 018819 235 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (350)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~ 314 (350)
.++...|++||++++.|++.++.|+ .+.||+|++|+||+|+|++..
T Consensus 161 ---------------------------------~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~ 206 (271)
T 3ek2_A 161 ---------------------------------IPNYNTMGLAKAALEASVRYLAVSL-GAKGVRVNAISAGPIKTLAAS 206 (271)
T ss_dssp ---------------------------------CTTTTHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEECCC-----C
T ss_pred ---------------------------------CCCccchhHHHHHHHHHHHHHHHHH-HhcCcEEEEEecCcccchhhh
Confidence 3677899999999999999999999 677999999999999998753
Q ss_pred ccchhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 315 REHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
... ................++.+|+|+|+.++++
T Consensus 207 ~~~-~~~~~~~~~~~~~~~~~~~~pedva~~i~~l 240 (271)
T 3ek2_A 207 GIK-SFGKILDFVESNSPLKRNVTIEQVGNAGAFL 240 (271)
T ss_dssp CCH-HHHHHHHHHHHHSTTSSCCCHHHHHHHHHHH
T ss_pred ccc-chHHHHHHHHhcCCcCCCCCHHHHHHHHHHH
Confidence 311 1111111112222345678999999988764
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=267.39 Aligned_cols=211 Identities=24% Similarity=0.296 Sum_probs=177.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhc-cCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG-MAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~-~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
++|++|||||++|||+++|++|+++|+ +|++++|+.++.++..+++. ..+.++.++.||++|+++++++++++.+.++
T Consensus 1 ~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 79 (235)
T 3l77_A 1 EMKVAVITGASRGIGEAIARALARDGY-ALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFG 79 (235)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence 367999999999999999999999995 89999999888888777764 4467899999999999999999999999999
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCC
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (350)
++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+. .+++|++||..+..+
T Consensus 80 ~id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~---~~~ii~~sS~~~~~~----------- 144 (235)
T 3l77_A 80 DVDVVVANAGLGYF-KRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRT---GGLALVTTSDVSARL----------- 144 (235)
T ss_dssp SCSEEEECCCCCCC-CCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH---TCEEEEECCGGGSSC-----------
T ss_pred CCCEEEECCccccc-cCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCcEEEEecchhccc-----------
Confidence 99999999998654 778889999999999999999999999999999554 369999999887643
Q ss_pred ccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHh
Q 018819 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL 323 (350)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~ 323 (350)
.++...|++||++++.+++.+..+ .+||+||+|+||+|+|++.......
T Consensus 145 ------------------------~~~~~~Y~~sKaa~~~~~~~l~~~---~~~i~v~~v~PG~v~T~~~~~~~~~---- 193 (235)
T 3l77_A 145 ------------------------IPYGGGYVSTKWAARALVRTFQIE---NPDVRFFELRPGAVDTYFGGSKPGK---- 193 (235)
T ss_dssp ------------------------CTTCHHHHHHHHHHHHHHHHHHHH---CTTSEEEEEEECSBSSSTTTCCSCC----
T ss_pred ------------------------CCCcchHHHHHHHHHHHHHHHhhc---CCCeEEEEEeCCccccccccccCCc----
Confidence 356689999999999999999444 4699999999999999875321110
Q ss_pred hhhhhHHhhhcCccchhhhhhhcccc
Q 018819 324 LFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 324 ~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
+. ..++.+|+|+|+.++++
T Consensus 194 --~~-----~~~~~~p~dva~~v~~l 212 (235)
T 3l77_A 194 --PK-----EKGYLKPDEIAEAVRCL 212 (235)
T ss_dssp --CG-----GGTCBCHHHHHHHHHHH
T ss_pred --cc-----ccCCCCHHHHHHHHHHH
Confidence 01 12567999999988764
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-37 Score=285.16 Aligned_cols=224 Identities=18% Similarity=0.143 Sum_probs=185.2
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC----------hhHHHHHHHHhccCCCceEEEEccCCCHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD----------FLKAERAAKSAGMAKENYTIMHLDLASLDS 150 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~----------~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~ 150 (350)
+..+++|++|||||++|||+++|++|+++|+ +|++++|+ .+..++..+++...+.++.++.||++|+++
T Consensus 22 m~~l~gk~vlVTGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~ 100 (322)
T 3qlj_A 22 MGVVDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQ 100 (322)
T ss_dssp CCTTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHH
T ss_pred hcccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHH
Confidence 4568999999999999999999999999996 99999887 667777778887777889999999999999
Q ss_pred HHHHHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCC----CCCeEEEEec
Q 018819 151 VRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY----PSKRLIIVGS 226 (350)
Q Consensus 151 v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~----~~g~iV~vSS 226 (350)
++++++++.+++|++|+||||||+... .++.+.+.++|++++++|+.|++++++++.|.|.+... .+|+||++||
T Consensus 101 v~~~~~~~~~~~g~iD~lv~nAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS 179 (322)
T 3qlj_A 101 AAGLIQTAVETFGGLDVLVNNAGIVRD-RMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSS 179 (322)
T ss_dssp HHHHHHHHHHHHSCCCEEECCCCCCCC-CCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcC
Confidence 999999999999999999999999754 67788999999999999999999999999999875321 1369999999
Q ss_pred cCCCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCC
Q 018819 227 ITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPG 306 (350)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG 306 (350)
.++..+ .++...|++||++++.|+++++.|+ .+.||+||+|+||
T Consensus 180 ~~~~~~-----------------------------------~~~~~~Y~asKaal~~l~~~la~e~-~~~gI~vn~v~PG 223 (322)
T 3qlj_A 180 GAGLQG-----------------------------------SVGQGNYSAAKAGIATLTLVGAAEM-GRYGVTVNAIAPS 223 (322)
T ss_dssp HHHHHC-----------------------------------BTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEEC
T ss_pred HHHccC-----------------------------------CCCCccHHHHHHHHHHHHHHHHHHh-cccCcEEEEecCC
Confidence 988753 3577899999999999999999999 6779999999999
Q ss_pred cccCCcccccchhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 307 CIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 307 ~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
+.|++.......... .........+|+|+|+.+++|
T Consensus 224 -~~t~~~~~~~~~~~~------~~~~~~~~~~pedva~~v~~L 259 (322)
T 3qlj_A 224 -ARTRMTETVFAEMMA------TQDQDFDAMAPENVSPLVVWL 259 (322)
T ss_dssp -TTSCCSCCSCCC--------------CCTTCGGGTHHHHHHH
T ss_pred -CCCccchhhhhhhhh------ccccccCCCCHHHHHHHHHHH
Confidence 899875332111100 001112346899998887654
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-37 Score=275.81 Aligned_cols=221 Identities=19% Similarity=0.199 Sum_probs=170.2
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+++++|++|||||++|||+++|++|+++|+ +|++++|+.++. .+++ +.++.+++||++|+++++++++.+.+
T Consensus 5 m~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~---~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~- 76 (257)
T 3tl3_A 5 MEIRDAVAVVTGGASGLGLATTKRLLDAGA-QVVVLDIRGEDV---VADL---GDRARFAAADVTDEAAVASALDLAET- 76 (257)
T ss_dssp -----CEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCHHH---HHHT---CTTEEEEECCTTCHHHHHHHHHHHHH-
T ss_pred ceecCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCchHHH---HHhc---CCceEEEECCCCCHHHHHHHHHHHHH-
Confidence 467899999999999999999999999995 899999865432 2223 46789999999999999999998877
Q ss_pred CCCCcEEEEccccCCCC---CCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCC------CCCCeEEEEeccCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPT---AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSD------YPSKRLIIVGSITGNTN 232 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~---~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~------~~~g~iV~vSS~~~~~~ 232 (350)
++++|+||||||+.... .+..+.+.++|++++++|+.|+++++++++|.|.+.. ...|+||++||.++..+
T Consensus 77 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~ 156 (257)
T 3tl3_A 77 MGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDG 156 (257)
T ss_dssp HSCEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--CC
T ss_pred hCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhcCC
Confidence 89999999999985321 1223578999999999999999999999999998721 12579999999988753
Q ss_pred CCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 233 TLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
.++...|++||++++.+++.++.|+ .++||+||+|+||+|+|++
T Consensus 157 -----------------------------------~~~~~~Y~asKaa~~~~~~~la~e~-~~~gI~vn~v~PG~v~T~~ 200 (257)
T 3tl3_A 157 -----------------------------------QIGQAAYSASKGGVVGMTLPIARDL-ASHRIRVMTIAPGLFDTPL 200 (257)
T ss_dssp -----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCTT
T ss_pred -----------------------------------CCCCccHHHHHHHHHHHHHHHHHHh-cccCcEEEEEEecCccChh
Confidence 3578899999999999999999999 6779999999999999997
Q ss_pred ccccchhhHHhhhhhhHHhhh-cCccchhhhhhhcccc
Q 018819 313 LFREHIPLFRLLFPPFQKYIT-KGYVSEDEAGKRLAQV 349 (350)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~a~~i~~~ 349 (350)
+........ ......... .++.+|+|+|+.++++
T Consensus 201 ~~~~~~~~~---~~~~~~~~~~~r~~~p~dva~~v~~l 235 (257)
T 3tl3_A 201 LASLPEEAR---ASLGKQVPHPSRLGNPDEYGALAVHI 235 (257)
T ss_dssp C---CHHHH---HHHHHTSSSSCSCBCHHHHHHHHHHH
T ss_pred hhhccHHHH---HHHHhcCCCCCCccCHHHHHHHHHHH
Confidence 643111110 011111122 5678999999988764
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=280.15 Aligned_cols=224 Identities=16% Similarity=0.123 Sum_probs=182.5
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEe-cChhHHHHHHHHhc-cCCCceEEEEccCCCHH-----------
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAG-MAKENYTIMHLDLASLD----------- 149 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~-r~~~~~~~~~~~l~-~~~~~v~~~~~Dvs~~~----------- 149 (350)
.+++|++|||||++|||+++|+.|+++|+ +|++++ |+.+..+++.+++. ..+.++.++.||++|++
T Consensus 43 ~l~~k~~lVTGas~GIG~aia~~La~~G~-~Vv~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 121 (328)
T 2qhx_A 43 APTVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSA 121 (328)
T ss_dssp --CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCC-------C
T ss_pred ccCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCchhcccccccccc
Confidence 47899999999999999999999999995 899999 99888887777765 44668999999999999
Q ss_pred ------HHHHHHHHHHHcCCCCcEEEEccccCCCCCCCCCCC--------------HHHHHHHHhhhhHHHHHHHHHHHH
Q 018819 150 ------SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFT--------------AEGFELSVGTNHLGHFLLSRLLLD 209 (350)
Q Consensus 150 ------~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~--------------~~~~~~~~~~n~~g~~~l~~~~~~ 209 (350)
+++++++++.+.++++|+||||||+... .++.+.+ .++|+.++++|+.|+++++++++|
T Consensus 122 ~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~-~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~ 200 (328)
T 2qhx_A 122 PVTLFTRCAELVAACYTHWGRCDVLVNNASSFYP-TPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAH 200 (328)
T ss_dssp CBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCC-CCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhcCCCCEEEECCCCCCC-CChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998654 5677778 999999999999999999999999
Q ss_pred HHhcCCC----CCCeEEEEeccCCCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHH
Q 018819 210 DLKQSDY----PSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTM 285 (350)
Q Consensus 210 ~~~~~~~----~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~ 285 (350)
.|.+++. ..|+||++||..+..+ .++...|++||++++.++
T Consensus 201 ~m~~~~~~~~~~~g~IV~isS~~~~~~-----------------------------------~~~~~~Y~asKaal~~l~ 245 (328)
T 2qhx_A 201 RVAGTPAKHRGTNYSIINMVDAMTNQP-----------------------------------LLGYTIYTMAKGALEGLT 245 (328)
T ss_dssp HHHHSCGGGSCSCEEEEEECCTTTTSC-----------------------------------CTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCCcCCCCCcEEEEECchhhccC-----------------------------------CCCcHHHHHHHHHHHHHH
Confidence 9976530 0369999999988753 357789999999999999
Q ss_pred HHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhhhhhhHHhhhc-Cccchhhhhhhcccc
Q 018819 286 QEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITK-GYVSEDEAGKRLAQV 349 (350)
Q Consensus 286 ~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~a~~i~~~ 349 (350)
+.++.|+ .+.||+||+|+||+|+|++ .. .+. ............ ++.+|+|+|+.++++
T Consensus 246 ~~la~el-~~~gIrvn~v~PG~v~T~~--~~-~~~--~~~~~~~~~p~~~r~~~pedvA~~v~~l 304 (328)
T 2qhx_A 246 RSAALEL-APLQIRVNGVGPGLSVLVD--DM-PPA--VWEGHRSKVPLYQRDSSAAEVSDVVIFL 304 (328)
T ss_dssp HHHHHHH-GGGTEEEEEEEESSBSCCC--CS-CHH--HHHHHHTTCTTTTSCBCHHHHHHHHHHH
T ss_pred HHHHHHH-hhcCcEEEEEecCcccCCc--cc-cHH--HHHHHHhhCCCCCCCCCHHHHHHHHHHH
Confidence 9999999 6679999999999999997 22 121 000001111223 578999999988764
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=281.35 Aligned_cols=192 Identities=26% Similarity=0.298 Sum_probs=163.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC-----hhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD-----FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDT 157 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~-----~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~ 157 (350)
.+++|++|||||++|||+++|++|+++|+ +|+++.|+ .+.++++.+.+...+.++.++.+|++|++++++++++
T Consensus 2 ~m~~k~vlVTGas~GIG~aia~~L~~~G~-~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~ 80 (324)
T 3u9l_A 2 VMSKKIILITGASSGFGRLTAEALAGAGH-RVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQ 80 (324)
T ss_dssp ---CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHH
Confidence 46789999999999999999999999995 89887765 4555666665555567899999999999999999999
Q ss_pred HHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCC
Q 018819 158 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237 (350)
Q Consensus 158 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~ 237 (350)
+.+++|++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||+++..+.
T Consensus 81 ~~~~~g~iD~lVnnAG~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~--~g~iV~isS~~~~~~~---- 153 (324)
T 3u9l_A 81 IIGEDGRIDVLIHNAGHMVF-GPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQK--HGLLIWISSSSSAGGT---- 153 (324)
T ss_dssp HHHHHSCCSEEEECCCCCBC-SCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTSCC----
T ss_pred HHHHcCCCCEEEECCCcCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCEEEEEecchhccCC----
Confidence 99999999999999998643 6788899999999999999999999999999998765 5799999999887431
Q ss_pred CCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.++...|++||++++.++++++.|+ .+.||+|++|+||+|.|++.
T Consensus 154 ------------------------------~~~~~~Y~asKaa~~~~~~~la~el-~~~gI~v~~v~PG~v~t~~~ 198 (324)
T 3u9l_A 154 ------------------------------PPYLAPYFAAKAAMDAIAVQYAREL-SRWGIETSIIVPGAFTSGTN 198 (324)
T ss_dssp ------------------------------CSSCHHHHHHHHHHHHHHHHHHHHH-HTTTEEEEEEEECCC-----
T ss_pred ------------------------------CCcchhHHHHHHHHHHHHHHHHHHh-hhhCcEEEEEECCccccCch
Confidence 3567889999999999999999999 67799999999999998653
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=273.46 Aligned_cols=223 Identities=20% Similarity=0.233 Sum_probs=181.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|++|||||++|||++++++|+++|+ +|++++|+.+..++..+++. ++.++.||++|+++++++++++.+.+
T Consensus 6 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~----~~~~~~~Dv~d~~~v~~~~~~~~~~~ 80 (270)
T 1yde_A 6 RYAGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQELP----GAVFILCDVTQEDDVKTLVSETIRRF 80 (270)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCT----TEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc----CCeEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999995 89999999887777666653 37889999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|+|.++ .|+||++||..+..+
T Consensus 81 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~---~g~iv~isS~~~~~~---------- 147 (270)
T 1yde_A 81 GRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS---QGNVINISSLVGAIG---------- 147 (270)
T ss_dssp SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH---TCEEEEECCHHHHHC----------
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHC---CCEEEEEcCccccCC----------
Confidence 9999999999986544667788999999999999999999999999998764 379999999887643
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccc--hh-
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH--IP- 319 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~--~~- 319 (350)
.++...|++||++++.++++++.|+ .++||+||+|+||+|+|++..... .+
T Consensus 148 -------------------------~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~Pg~v~t~~~~~~~~~~~~ 201 (270)
T 1yde_A 148 -------------------------QAQAVPYVATKGAVTAMTKALALDE-SPYGVRVNCISPGNIWTPLWEELAALMPD 201 (270)
T ss_dssp -------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCCHHHHHHHTTSSS
T ss_pred -------------------------CCCCcccHHHHHHHHHHHHHHHHHh-hhhCcEEEEEEeCccccchhhhhhhcccc
Confidence 2567899999999999999999999 677999999999999998642100 00
Q ss_pred hHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
...............++.+|+|+|+.++++
T Consensus 202 ~~~~~~~~~~~~p~~r~~~p~dva~~v~~L 231 (270)
T 1yde_A 202 PRASIREGMLAQPLGRMGQPAEVGAAAVFL 231 (270)
T ss_dssp HHHHHHHHHHTSTTSSCBCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCCCCCCcCHHHHHHHHHHH
Confidence 000000001112235568999999988754
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=274.43 Aligned_cols=228 Identities=16% Similarity=0.126 Sum_probs=180.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEE-ecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMA-CRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~-~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.++|++|||||++|||+++|++|+++|+ +|+++ .|+.+..++..+++...+.++.++.||++|.++++++++++.+.+
T Consensus 24 ~~~k~vlITGas~gIG~a~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 102 (272)
T 4e3z_A 24 SDTPVVLVTGGSRGIGAAVCRLAARQGW-RVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQF 102 (272)
T ss_dssp CCSCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 3578999999999999999999999996 66555 788888888888777777889999999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCC-CCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSD-YPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
+++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|.+.. ...|+||++||.++..+.
T Consensus 103 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-------- 174 (272)
T 4e3z_A 103 GRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGS-------- 174 (272)
T ss_dssp SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHCC--------
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccCC--------
Confidence 99999999999876556778889999999999999999999999999997631 124799999999887532
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.++...|++||++++.+++.++.|+ .+.||+|++|+||+|+|++......+.
T Consensus 175 --------------------------~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~~- 226 (272)
T 4e3z_A 175 --------------------------ATQYVDYAASKAAIDTFTIGLAREV-AAEGIRVNAVRPGIIETDLHASGGLPD- 226 (272)
T ss_dssp --------------------------TTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBC------------
T ss_pred --------------------------CCCcchhHHHHHHHHHHHHHHHHHH-HHcCcEEEEEecCCCcCCcccccCChH-
Confidence 2356789999999999999999999 667999999999999998754321111
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
............++.+|+|+|+.++++
T Consensus 227 -~~~~~~~~~~~~~~~~~edvA~~i~~l 253 (272)
T 4e3z_A 227 -RAREMAPSVPMQRAGMPEEVADAILYL 253 (272)
T ss_dssp --------CCTTSSCBCHHHHHHHHHHH
T ss_pred -HHHHHhhcCCcCCCcCHHHHHHHHHHH
Confidence 001111112234567899999988764
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-37 Score=275.99 Aligned_cols=218 Identities=18% Similarity=0.142 Sum_probs=176.0
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
++.+++|++|||||++|||+++|++|+++|+ +|++++|+.+..+ ....+.+|++|.++++++++++.+
T Consensus 23 m~~l~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~-----------~~~~~~~Dv~~~~~~~~~~~~~~~ 90 (266)
T 3uxy_A 23 MQGFEGKVALVTGAAGGIGGAVVTALRAAGA-RVAVADRAVAGIA-----------ADLHLPGDLREAAYADGLPGAVAA 90 (266)
T ss_dssp ---CTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECSSCCTTSC-----------CSEECCCCTTSHHHHHHHHHHHHH
T ss_pred hhCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHH-----------hhhccCcCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999999996 8999999754321 124458999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
.++++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||..+..+
T Consensus 91 ~~g~iD~lvnnAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~~~~~-------- 159 (266)
T 3uxy_A 91 GLGRLDIVVNNAGVISR-GRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAG--GGAIVNVASCWGLRP-------- 159 (266)
T ss_dssp HHSCCCEEEECCCCCCC-BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCSBTTBC--------
T ss_pred hcCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEECCHHhCCC--------
Confidence 99999999999999754 6777899999999999999999999999999998765 579999999988753
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~ 320 (350)
.++...|++||++++.++++++.|+ .+.||+||+|+||+|+|++........
T Consensus 160 ---------------------------~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~~~~ 211 (266)
T 3uxy_A 160 ---------------------------GPGHALYCLTKAALASLTQCMGMDH-APQGIRINAVCPNEVNTPMLRTGFAKR 211 (266)
T ss_dssp ---------------------------CTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESSBCCHHHHHHHHHT
T ss_pred ---------------------------CCCChHHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEeeCCCcchHhhhhhhcc
Confidence 3678899999999999999999999 567999999999999998753211100
Q ss_pred ----HHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 321 ----FRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 ----~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..............++.+|+|+|+.++++
T Consensus 212 ~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L 244 (266)
T 3uxy_A 212 GFDPDRAVAELGRTVPLGRIAEPEDIADVVLFL 244 (266)
T ss_dssp TCCHHHHHHHHHTTSTTSSCBCHHHHHHHHHHH
T ss_pred cccchHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 00000111112235678999999988764
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=270.54 Aligned_cols=228 Identities=18% Similarity=0.152 Sum_probs=182.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHH---cCCcEEEEEecChhHHHHHHHHhccC--CCceEEEEccCCCHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAE---TGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDT 157 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~---~Ga~~Vi~~~r~~~~~~~~~~~l~~~--~~~v~~~~~Dvs~~~~v~~~~~~ 157 (350)
.+++|++|||||++|||+++|++|++ +|+ +|++++|+.+..++..+++... +.++.++.||++|++++++++++
T Consensus 3 ~l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 81 (259)
T 1oaa_A 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSA 81 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHhhcCCC-eEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHH
Confidence 46789999999999999999999999 895 9999999988888777776543 56789999999999999999999
Q ss_pred HHH--cCCCCc--EEEEccccCCCC-CCCCC-CCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCC
Q 018819 158 FRR--SGRPLD--VLVCNAAVYLPT-AKEPT-FTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNT 231 (350)
Q Consensus 158 ~~~--~~g~id--~lv~~Ag~~~~~-~~~~~-~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~ 231 (350)
+.+ .++++| +||||||+.... .++.+ .+.++|++++++|+.|+++++++++|.|.++..+.|+||++||.++..
T Consensus 82 ~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~~ 161 (259)
T 1oaa_A 82 VRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ 161 (259)
T ss_dssp HHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS
T ss_pred HHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhcC
Confidence 988 678899 999999986431 34556 689999999999999999999999999977511147999999998875
Q ss_pred CCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCC
Q 018819 232 NTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (350)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~ 311 (350)
+ .++...|++||++++.+++.++.|+ . +|+||+|+||+|+|+
T Consensus 162 ~-----------------------------------~~~~~~Y~asKaa~~~~~~~la~e~-~--~i~vn~v~PG~v~T~ 203 (259)
T 1oaa_A 162 P-----------------------------------YKGWGLYCAGKAARDMLYQVLAAEE-P--SVRVLSYAPGPLDND 203 (259)
T ss_dssp C-----------------------------------CTTCHHHHHHHHHHHHHHHHHHHHC-T--TEEEEEEECCSBSSH
T ss_pred C-----------------------------------CCCccHHHHHHHHHHHHHHHHHhhC-C--CceEEEecCCCcCcc
Confidence 3 3577899999999999999999998 3 399999999999998
Q ss_pred cccccchhh-HHhhhhhhH-HhhhcCccchhhhhhhcccc
Q 018819 312 GLFREHIPL-FRLLFPPFQ-KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 312 ~~~~~~~~~-~~~~~~~~~-~~~~~~~~s~~~~a~~i~~~ 349 (350)
+........ .......+. .....++.+|+|+|+.++++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~~v~~l 243 (259)
T 1oaa_A 204 MQQLARETSKDPELRSKLQKLKSDGALVDCGTSAQKLLGL 243 (259)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHTTCSBCHHHHHHHHHHH
T ss_pred hHHHHhhccCChhHHHHHHHhhhcCCcCCHHHHHHHHHHH
Confidence 642210000 000001111 12235678999999988754
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-36 Score=271.20 Aligned_cols=227 Identities=16% Similarity=0.150 Sum_probs=182.7
Q ss_pred ccccCCCEEEEEcCC--CchHHHHHHHHHHcCCcEEEEEecChhHH-HHHHHHhc-cCCCceEEEEccCCCHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKA-ERAAKSAG-MAKENYTIMHLDLASLDSVRQFVD 156 (350)
Q Consensus 81 ~~~l~~~~~lItGgs--~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~-~~~~~~l~-~~~~~v~~~~~Dvs~~~~v~~~~~ 156 (350)
++++++|++|||||+ +|||+++|++|+++|+ +|++++|+.... ++..+++. ..+.++.+++||++|+++++++++
T Consensus 15 ~~~l~~k~vlITGas~~~giG~~~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~ 93 (267)
T 3gdg_A 15 QLSLKGKVVVVTGASGPKGMGIEAARGCAEMGA-AVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVK 93 (267)
T ss_dssp HHCCTTCEEEETTCCSSSSHHHHHHHHHHHTSC-EEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHH
T ss_pred ccCcCCCEEEEECCCCCCChHHHHHHHHHHCCC-eEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHH
Confidence 356899999999999 9999999999999996 888888765433 44444443 236789999999999999999999
Q ss_pred HHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCC
Q 018819 157 TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236 (350)
Q Consensus 157 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~ 236 (350)
++.+.++++|+||||||+... ..+.+.+.++|++.+++|+.|+++++++++|.|.+++ .|+||++||.++..+.
T Consensus 94 ~~~~~~g~id~li~nAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~~~--- 167 (267)
T 3gdg_A 94 DVVADFGQIDAFIANAGATAD-SGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERG--TGSLVITASMSGHIAN--- 167 (267)
T ss_dssp HHHHHTSCCSEEEECCCCCCC-SCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCGGGTSCC---
T ss_pred HHHHHcCCCCEEEECCCcCCC-CCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcC--CceEEEEccccccccC---
Confidence 999999999999999998754 6678899999999999999999999999999998765 4799999999887532
Q ss_pred CCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccccc
Q 018819 237 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 316 (350)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~ 316 (350)
..++...|++||++++.+++.++.|+ .+. |+||+|+||+|+|++....
T Consensus 168 ------------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~-i~v~~v~PG~v~t~~~~~~ 215 (267)
T 3gdg_A 168 ------------------------------FPQEQTSYNVAKAGCIHMARSLANEW-RDF-ARVNSISPGYIDTGLSDFV 215 (267)
T ss_dssp ------------------------------SSSCCHHHHHHHHHHHHHHHHHHHHT-TTT-CEEEEEEECCEECSCGGGS
T ss_pred ------------------------------CCCCCCcchHHHHHHHHHHHHHHHHh-ccC-cEEEEEECCccccchhhhC
Confidence 01367899999999999999999999 554 9999999999999875321
Q ss_pred chhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 317 HIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..... ..........++.+|+|+|+.++++
T Consensus 216 ~~~~~---~~~~~~~~~~r~~~~~dva~~~~~l 245 (267)
T 3gdg_A 216 PKETQ---QLWHSMIPMGRDGLAKELKGAYVYF 245 (267)
T ss_dssp CHHHH---HHHHTTSTTSSCEETHHHHHHHHHH
T ss_pred CHHHH---HHHHhcCCCCCCcCHHHHHhHhhee
Confidence 11110 0011112235567899999887654
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-36 Score=273.32 Aligned_cols=224 Identities=12% Similarity=0.095 Sum_probs=177.5
Q ss_pred ccCCCEEEEEcCC--CchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 83 TLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 83 ~l~~~~~lItGgs--~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
.+++|++|||||+ +|||+++|+.|+++|+ +|++++|+.+ .++..+++......+.++.||++|+++++++++++.+
T Consensus 3 ~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~-~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 80 (275)
T 2pd4_A 3 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNES-LEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKK 80 (275)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTT-THHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEeCCHH-HHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHH
Confidence 4678999999999 9999999999999995 8999999875 3333333322112478899999999999999999999
Q ss_pred cCCCCcEEEEccccCCC---CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~---~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~ 237 (350)
.++++|+||||||+... ..++.+.+.++|++++++|+.|+++++++++|.|.+ +|+||++||..+..+
T Consensus 81 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~----~g~iv~isS~~~~~~----- 151 (275)
T 2pd4_A 81 DLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNN----GASVLTLSYLGSTKY----- 151 (275)
T ss_dssp HTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE----EEEEEEEECGGGTSB-----
T ss_pred HcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcc----CCEEEEEecchhcCC-----
Confidence 99999999999998643 246678899999999999999999999999999875 369999999887643
Q ss_pred CCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccc
Q 018819 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317 (350)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~ 317 (350)
.++...|++||++++.+++.++.|+ .+.||+||+|+||+|+|++....
T Consensus 152 ------------------------------~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~~- 199 (275)
T 2pd4_A 152 ------------------------------MAHYNVMGLAKAALESAVRYLAVDL-GKHHIRVNALSAGPIRTLASSGI- 199 (275)
T ss_dssp ------------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEECCCCCTTGGGS-
T ss_pred ------------------------------CCCchhhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCccccchhhhc-
Confidence 3567889999999999999999999 67799999999999999875321
Q ss_pred hhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 318 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.................++.+|+|+|+.++++
T Consensus 200 ~~~~~~~~~~~~~~p~~~~~~p~dva~~~~~l 231 (275)
T 2pd4_A 200 ADFRMILKWNEINAPLRKNVSLEEVGNAGMYL 231 (275)
T ss_dssp TTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHhcCCcCCCCCHHHHHHHHHHH
Confidence 11111111111112234567999999988753
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-36 Score=268.92 Aligned_cols=215 Identities=18% Similarity=0.211 Sum_probs=180.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++. .++.++.+|++|+++++++++++.+++
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~~~ 79 (260)
T 1nff_A 4 RLTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELA---DAARYVHLDVTQPAQWKAAVDTAVTAF 79 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTG---GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhh---cCceEEEecCCCHHHHHHHHHHHHHHc
Confidence 46889999999999999999999999995 89999999888777766664 247889999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||..+..+
T Consensus 80 g~iD~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~~---------- 146 (260)
T 1nff_A 80 GGLHVLVNNAGILNI-GTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAG--RGSIINISSIEGLAG---------- 146 (260)
T ss_dssp SCCCEEEECCCCCCC-BCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTSC----------
T ss_pred CCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CCEEEEEeehhhcCC----------
Confidence 999999999998643 6777899999999999999999999999999998754 479999999988753
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.++...|++||++++.+++.++.|+ .+.||++|+|+||+|+|++.. ..+ ..
T Consensus 147 -------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~--~~~-~~ 197 (260)
T 1nff_A 147 -------------------------TVACHGYTATKFAVRGLTKSTALEL-GPSGIRVNSIHPGLVKTPMTD--WVP-ED 197 (260)
T ss_dssp -------------------------CTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCSGGGT--TSC-TT
T ss_pred -------------------------CCCchhHHHHHHHHHHHHHHHHHHh-CccCcEEEEEEeCCCCCCccc--cch-hh
Confidence 2567899999999999999999999 567999999999999998642 110 00
Q ss_pred hhhhhhHHhhhcCccchhhhhhhccc
Q 018819 323 LLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 323 ~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
+......++.+|+|+|+.+++
T Consensus 198 -----~~~~~~~~~~~~~dvA~~v~~ 218 (260)
T 1nff_A 198 -----IFQTALGRAAEPVEVSNLVVY 218 (260)
T ss_dssp -----CSCCSSSSCBCHHHHHHHHHH
T ss_pred -----HHhCccCCCCCHHHHHHHHHH
Confidence 001112446788998887765
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-36 Score=273.34 Aligned_cols=223 Identities=17% Similarity=0.103 Sum_probs=176.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEec-ChhHHHHHHHHhccC-CCceEEEEccCCCH----HHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMA-KENYTIMHLDLASL----DSVRQFVD 156 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r-~~~~~~~~~~~l~~~-~~~v~~~~~Dvs~~----~~v~~~~~ 156 (350)
.+++|++|||||++|||+++|++|+++|+ +|++++| +.+..+++.+++... +.++.++.||++|. ++++++++
T Consensus 8 ~~~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 86 (276)
T 1mxh_A 8 ASECPAAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIID 86 (276)
T ss_dssp ---CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHH
Confidence 45789999999999999999999999995 8999999 887777777776543 56789999999999 99999999
Q ss_pred HHHHcCCCCcEEEEccccCCCCCCCCCCCH-----------HHHHHHHhhhhHHHHHHHHHHHHHHhcCCC----CCCeE
Q 018819 157 TFRRSGRPLDVLVCNAAVYLPTAKEPTFTA-----------EGFELSVGTNHLGHFLLSRLLLDDLKQSDY----PSKRL 221 (350)
Q Consensus 157 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~-----------~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~----~~g~i 221 (350)
++.+.++++|+||||||+... .++.+.+. ++|++++++|+.|+++++++++|.|. ++. ..|+|
T Consensus 87 ~~~~~~g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~~~~~~~~g~i 164 (276)
T 1mxh_A 87 CSFRAFGRCDVLVNNASAYYP-TPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQG-EGGAWRSRNLSV 164 (276)
T ss_dssp HHHHHHSCCCEEEECCCCCCC-CCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC--------CCCEEE
T ss_pred HHHHhcCCCCEEEECCCCCCC-CCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHh-cCCCCCCCCcEE
Confidence 999999999999999998654 56777788 99999999999999999999999986 320 01799
Q ss_pred EEEeccCCCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEE
Q 018819 222 IIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFA 301 (350)
Q Consensus 222 V~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~ 301 (350)
|++||..+..+ .+++..|++||++++.+++.++.|+ .+.||+||
T Consensus 165 v~isS~~~~~~-----------------------------------~~~~~~Y~asK~a~~~l~~~la~e~-~~~gi~v~ 208 (276)
T 1mxh_A 165 VNLCDAMTDLP-----------------------------------LPGFCVYTMAKHALGGLTRAAALEL-APRHIRVN 208 (276)
T ss_dssp EEECCGGGGSC-----------------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEE
T ss_pred EEECchhhcCC-----------------------------------CCCCeehHHHHHHHHHHHHHHHHHH-hhcCeEEE
Confidence 99999988753 3577899999999999999999999 66799999
Q ss_pred EeeCCcccCCcccccchhhHHhhhhhhHHhhhcC-ccchhhhhhhcccc
Q 018819 302 SLYPGCIATTGLFREHIPLFRLLFPPFQKYITKG-YVSEDEAGKRLAQV 349 (350)
Q Consensus 302 ~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~a~~i~~~ 349 (350)
+|+||+|+|+ . ...+. ............+ +.+|+|+|+.++++
T Consensus 209 ~v~PG~v~t~-~--~~~~~--~~~~~~~~~p~~r~~~~~~dva~~v~~l 252 (276)
T 1mxh_A 209 AVAPGLSLLP-P--AMPQE--TQEEYRRKVPLGQSEASAAQIADAIAFL 252 (276)
T ss_dssp EEEESSBSCC-S--SSCHH--HHHHHHTTCTTTSCCBCHHHHHHHHHHH
T ss_pred EEecCcccCC-c--cCCHH--HHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 9999999998 2 11111 0000011112234 67999999988754
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-36 Score=271.92 Aligned_cols=223 Identities=19% Similarity=0.180 Sum_probs=181.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+.+|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++ +.++.++.||++|.++++++++++.+.+
T Consensus 2 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 77 (281)
T 3m1a_A 2 SESAKVWLVTGASSGFGRAIAEAAVAAGD-TVIGTARRTEALDDLVAAY---PDRAEAISLDVTDGERIDVVAADVLARY 77 (281)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHC---TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhc---cCCceEEEeeCCCHHHHHHHHHHHHHhC
Confidence 35788999999999999999999999995 9999999988777766654 4578999999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|+||||||+... .++.+.+.++|++++++|+.|++++++.++|.|.+++ .|+||++||..+..+
T Consensus 78 g~id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~~~iv~~sS~~~~~~---------- 144 (281)
T 3m1a_A 78 GRVDVLVNNAGRTQV-GAFEETTERELRDLFELHVFGPARLTRALLPQMRERG--SGSVVNISSFGGQLS---------- 144 (281)
T ss_dssp SCCSEEEECCCCEEE-CCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTCC----------
T ss_pred CCCCEEEECCCcCCC-CChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCEEEEEcCccccCC----------
Confidence 999999999998644 6777899999999999999999999999999998765 479999999988753
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccccc------
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE------ 316 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~------ 316 (350)
.++...|++||++++.+++.++.|+ .+.||++++|+||+|+|+++...
T Consensus 145 -------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~ 198 (281)
T 3m1a_A 145 -------------------------FAGFSAYSATKAALEQLSEGLADEV-APFGIKVLIVEPGAFRTNLFGKGAAYFSE 198 (281)
T ss_dssp -------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCCTTTCCCCEEECC
T ss_pred -------------------------CCCchHHHHHHHHHHHHHHHHHHHh-hccCcEEEEEecCccccccccccccccCC
Confidence 3677899999999999999999999 56799999999999999875321
Q ss_pred chh-hHHhh---hhhhHHhhhcCccchhhhhhhccc
Q 018819 317 HIP-LFRLL---FPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 317 ~~~-~~~~~---~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
..+ +.... .+.........+.+|+|+|+.+++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~a~~~ 234 (281)
T 3m1a_A 199 ENPAYAEKVGPTRQLVQGSDGSQPGDPAKAAAAIRL 234 (281)
T ss_dssp BCTTTHHHHHHHHHHHHC-----CBCHHHHHHHHHH
T ss_pred cchhhHHHhHHHHHHHhhccCCCCCCHHHHHHHHHH
Confidence 111 11110 111111223456889999988764
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-36 Score=269.95 Aligned_cols=221 Identities=18% Similarity=0.156 Sum_probs=182.5
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
++++|++|||||++|||++++++|+++|+ +|++++|+.+..++..+++ +.++.++++|++|+++++++++++.+.+
T Consensus 3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 78 (253)
T 1hxh_A 3 RLQGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAEL---GERSMFVRHDVSSEADWTLVMAAVQRRL 78 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHH---CTTEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHc---CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46889999999999999999999999995 8999999988877776666 4578899999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|+||||||+... .++.+.+.++|++++++|+.+++++++.++|.|.+++ |+||++||..+..+
T Consensus 79 g~id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~---g~iv~isS~~~~~~---------- 144 (253)
T 1hxh_A 79 GTLNVLVNNAGILLP-GDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG---GSIINMASVSSWLP---------- 144 (253)
T ss_dssp CSCCEEEECCCCCCC-BCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC---EEEEEECCGGGTSC----------
T ss_pred CCCCEEEECCCCCCC-CCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC---CEEEEEcchhhcCC----------
Confidence 999999999998643 6778889999999999999999999999999998754 79999999988743
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCC--CcEEEEeeCCcccCCcccccchhh
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEET--GIAFASLYPGCIATTGLFREHIPL 320 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~--gi~v~~v~PG~v~t~~~~~~~~~~ 320 (350)
.++...|++||++++.+++.++.|+ .+. ||++|+|+||+|+|++......+.
T Consensus 145 -------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~ 198 (253)
T 1hxh_A 145 -------------------------IEQYAGYSASKAAVSALTRAAALSC-RKQGYAIRVNSIHPDGIYTPMMQASLPKG 198 (253)
T ss_dssp -------------------------CTTBHHHHHHHHHHHHHHHHHHHHH-HHHTCCEEEEEEEESEECCHHHHHHSCTT
T ss_pred -------------------------CCCCccHHHHHHHHHHHHHHHHHHh-hhcCCCeEEEEEEeCCccCchhhhccchh
Confidence 3567899999999999999999998 455 999999999999998643210000
Q ss_pred HHhhhhhhH----HhhhcCccchhhhhhhcccc
Q 018819 321 FRLLFPPFQ----KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 ~~~~~~~~~----~~~~~~~~s~~~~a~~i~~~ 349 (350)
.....+. .....++.+|+|+|+.++++
T Consensus 199 --~~~~~~~~~~~~~p~~~~~~~~dvA~~~~~l 229 (253)
T 1hxh_A 199 --VSKEMVLHDPKLNRAGRAYMPERIAQLVLFL 229 (253)
T ss_dssp --CCHHHHBCBTTTBTTCCEECHHHHHHHHHHH
T ss_pred --hhHHHHhhhhccCccCCCCCHHHHHHHHHHH
Confidence 0000010 11224567999999988753
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-36 Score=271.64 Aligned_cols=224 Identities=12% Similarity=0.147 Sum_probs=176.7
Q ss_pred cCCCEEEEEcCC--CchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 84 LRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 84 l~~~~~lItGgs--~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+++|++|||||+ +|||+++|+.|+++|+ +|++++|+.+ .++..+++......+.++.||++|+++++++++++.+.
T Consensus 19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 96 (285)
T 2p91_A 19 LEGKRALITGVANERSIAYGIAKSFHREGA-QLAFTYATPK-LEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEEN 96 (285)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEESSGG-GHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCCHH-HHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence 789999999999 9999999999999995 8999999874 33333333221123678999999999999999999999
Q ss_pred CCCCcEEEEccccCCC---CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~---~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (350)
++++|+||||||+... ..++.+.+.++|++++++|+.|+++++++++|.|.++ +|+||++||..+..+
T Consensus 97 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~---~g~iv~isS~~~~~~------ 167 (285)
T 2p91_A 97 WGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGR---NGAIVTLSYYGAEKV------ 167 (285)
T ss_dssp TSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTS---CCEEEEEECGGGTSB------
T ss_pred cCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc---CCEEEEEccchhccC------
Confidence 9999999999998642 2456678999999999999999999999999998754 379999999887643
Q ss_pred CCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch
Q 018819 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (350)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~ 318 (350)
.++...|++||++++.+++.++.|+ .+.||+||+|+||+|+|++.... .
T Consensus 168 -----------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~-~ 216 (285)
T 2p91_A 168 -----------------------------VPHYNVMGIAKAALESTVRYLAYDI-AKHGHRINAISAGPVKTLAAYSI-T 216 (285)
T ss_dssp -----------------------------CTTTTHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEECCCCCSCC--C-T
T ss_pred -----------------------------CCCccHHHHHHHHHHHHHHHHHHHh-cccCcEEEEEEeCcccCchhhcc-c
Confidence 2567789999999999999999999 67799999999999999875321 1
Q ss_pred hhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
................++.+|+|+|+.++++
T Consensus 217 ~~~~~~~~~~~~~p~~~~~~~~dva~~~~~l 247 (285)
T 2p91_A 217 GFHLLMEHTTKVNPFGKPITIEDVGDTAVFL 247 (285)
T ss_dssp THHHHHHHHHHHSTTSSCCCHHHHHHHHHHH
T ss_pred chHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 1111111111112234567999999988754
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-36 Score=269.76 Aligned_cols=227 Identities=15% Similarity=0.151 Sum_probs=178.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC-hhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD-FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~-~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
.+.+|++|||||++|||+++|++|+++|+ +|++++|+ ....+...+.+...+.++.++.||++|+++++++++++.+.
T Consensus 4 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 82 (264)
T 3i4f_A 4 GRFVRHALITAGTKGLGKQVTEKLLAKGY-SVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSH 82 (264)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred ccccCEEEEeCCCchhHHHHHHHHHHCCC-EEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 34678999999999999999999999996 88887665 44455556666666678999999999999999999999999
Q ss_pred CCCCcEEEEccccC-CCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVY-LPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 162 ~g~id~lv~~Ag~~-~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
++++|+||||||+. ....++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||......
T Consensus 83 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~g~iv~iss~~~~~~-------- 152 (264)
T 3i4f_A 83 FGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQN--FGRIINYGFQGADSA-------- 152 (264)
T ss_dssp HSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCTTGGGC--------
T ss_pred hCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcC--CCeEEEEeechhccc--------
Confidence 99999999999942 2335677889999999999999999999999999998765 479999999843210
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~ 320 (350)
.++++...|++||++++.+++.++.|+ .+.||+|++|+||+|+|++........
T Consensus 153 -------------------------~~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~~ 206 (264)
T 3i4f_A 153 -------------------------PGWIYRSAFAAAKVGLVSLTKTVAYEE-AEYGITANMVCPGDIIGEMKEATIQEA 206 (264)
T ss_dssp -------------------------CCCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCCCGGGGSCCHHHH
T ss_pred -------------------------CCCCCCchhHHHHHHHHHHHHHHHHHh-hhcCcEEEEEccCCccCccchhccHHH
Confidence 123567899999999999999999999 667999999999999998754322111
Q ss_pred HHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 ~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.. .........++.+|+|+|+.++++
T Consensus 207 ~~---~~~~~~p~~r~~~~~dva~~v~~l 232 (264)
T 3i4f_A 207 RQ---LKEHNTPIGRSGTGEDIARTISFL 232 (264)
T ss_dssp HH---C--------CCCCHHHHHHHHHHH
T ss_pred HH---HHhhcCCCCCCcCHHHHHHHHHHH
Confidence 11 111122335577999999988754
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=267.50 Aligned_cols=226 Identities=19% Similarity=0.203 Sum_probs=182.8
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+.+++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++.. ++.++.||++|+++++++++++.++
T Consensus 8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~---~~~~~~~D~~d~~~v~~~~~~~~~~ 83 (263)
T 3ak4_A 8 FDLSGRKAIVTGGSKGIGAAIARALDKAGA-TVAIADLDVMAAQAVVAGLEN---GGFAVEVDVTKRASVDAAMQKAIDA 83 (263)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCTT---CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhc---CCeEEEEeCCCHHHHHHHHHHHHHH
Confidence 457899999999999999999999999995 999999998777776665542 6788999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
+|++|+||||||+... .++.+.+.++|+..+++|+.|++++++++.|.|.+++. .|+||++||..+..+
T Consensus 84 ~g~iD~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~--------- 152 (263)
T 3ak4_A 84 LGGFDLLCANAGVSTM-RPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNT-KGVIVNTASLAAKVG--------- 152 (263)
T ss_dssp HTCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-CCEEEEECCGGGTSC---------
T ss_pred cCCCCEEEECCCcCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CeEEEEecccccccC---------
Confidence 9999999999998643 56778899999999999999999999999999976531 379999999987643
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh-
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL- 320 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~- 320 (350)
.++...|++||++++.+++.++.|+ .+.||+||+|+||+|+|++........
T Consensus 153 --------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~ 205 (263)
T 3ak4_A 153 --------------------------APLLAHYSASKFAVFGWTQALAREM-APKNIRVNCVCPGFVKTAMQEREIIWEA 205 (263)
T ss_dssp --------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBTTHHHHHHHHHHH
T ss_pred --------------------------CCCchhHHHHHHHHHHHHHHHHHHH-hHcCeEEEEEecccccChhhhhhccccc
Confidence 2567899999999999999999999 567999999999999998642210000
Q ss_pred -H-----HhhhhhhHH-hhhcCccchhhhhhhcccc
Q 018819 321 -F-----RLLFPPFQK-YITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 -~-----~~~~~~~~~-~~~~~~~s~~~~a~~i~~~ 349 (350)
. ......+.. ....++.+|+|+|+.++++
T Consensus 206 ~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~v~~l 241 (263)
T 3ak4_A 206 ELRGMTPEAVRAEYVSLTPLGRIEEPEDVADVVVFL 241 (263)
T ss_dssp HHHTSCHHHHHHHHHHTCTTCSCBCHHHHHHHHHHH
T ss_pred cccccCcHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 0 000011111 1234578999999988653
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-36 Score=265.93 Aligned_cols=217 Identities=18% Similarity=0.195 Sum_probs=167.5
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
|++++|++|||||++|||++++++|+++|+ +|++++|+.+. ...+ +.++.+|++|+++++++++++.+.
T Consensus 3 m~l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~--------~~~~--~~~~~~D~~d~~~~~~~~~~~~~~ 71 (250)
T 2fwm_X 3 MDFSGKNVWVTGAGKGIGYATALAFVEAGA-KVTGFDQAFTQ--------EQYP--FATEVMDVADAAQVAQVCQRLLAE 71 (250)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCCCS--------SCCS--SEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCchhh--------hcCC--ceEEEcCCCCHHHHHHHHHHHHHH
Confidence 457899999999999999999999999995 89999998541 1122 788899999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||..+..+
T Consensus 72 ~g~id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--~g~iv~isS~~~~~~--------- 139 (250)
T 2fwm_X 72 TERLDALVNAAGILRM-GATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQR--GGAIVTVASDAAHTP--------- 139 (250)
T ss_dssp CSCCCEEEECCCCCCC-CCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCGGGTSC---------
T ss_pred cCCCCEEEECCCcCCC-CCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcC--CCEEEEECchhhCCC---------
Confidence 9999999999998653 6778899999999999999999999999999998765 479999999988743
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.++...|++||++++.+++.++.|+ .+.||+||+|+||+|+|++......+.
T Consensus 140 --------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~- 191 (250)
T 2fwm_X 140 --------------------------RIGMSAYGASKAALKSLALSVGLEL-AGSGVRCNVVSPGSTDTDMQRTLWVSD- 191 (250)
T ss_dssp --------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCC-------------
T ss_pred --------------------------CCCCchHHHHHHHHHHHHHHHHHHh-CccCCEEEEEECCcccCccccccccCh-
Confidence 3567899999999999999999999 667999999999999998753211010
Q ss_pred HhhhhhhH--------HhhhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQ--------KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~--------~~~~~~~~s~~~~a~~i~~~ 349 (350)
......+. .....++.+|+|+|+.++++
T Consensus 192 ~~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~~v~~l 227 (250)
T 2fwm_X 192 DAEEQRIRGFGEQFKLGIPLGKIARPQEIANTILFL 227 (250)
T ss_dssp ------------------------CHHHHHHHHHHH
T ss_pred hHHHHHHhhhhhcccccCCCCCCcCHHHHHHHHHHH
Confidence 00000010 12234568999999988753
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=268.56 Aligned_cols=223 Identities=20% Similarity=0.224 Sum_probs=182.1
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
++++++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++ +.++.++.||++|.++++++++++ +
T Consensus 25 ~~~l~~k~vlVTGas~GIG~aia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~v~~~~~~~-~ 99 (281)
T 3ppi_A 25 IKQFEGASAIVSGGAGGLGEATVRRLHADGL-GVVIADLAAEKGKALADEL---GNRAEFVSTNVTSEDSVLAAIEAA-N 99 (281)
T ss_dssp CGGGTTEEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---CTTEEEEECCTTCHHHHHHHHHHH-T
T ss_pred hhccCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHh---CCceEEEEcCCCCHHHHHHHHHHH-H
Confidence 4578999999999999999999999999996 8999999998888887777 457899999999999999999999 7
Q ss_pred cCCCCcEEEEc-cccCCCCCCC-----CCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCC----CCCCeEEEEeccCCC
Q 018819 161 SGRPLDVLVCN-AAVYLPTAKE-----PTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSD----YPSKRLIIVGSITGN 230 (350)
Q Consensus 161 ~~g~id~lv~~-Ag~~~~~~~~-----~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~----~~~g~iV~vSS~~~~ 230 (350)
+++++|++||| ||+... ..+ .+.+.++|++.+++|+.+++++++++++.|.+.. ...|+||++||..+.
T Consensus 100 ~~~~id~lv~~aag~~~~-~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~ 178 (281)
T 3ppi_A 100 QLGRLRYAVVAHGGFGVA-QRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGY 178 (281)
T ss_dssp TSSEEEEEEECCCCCCCC-CCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGT
T ss_pred HhCCCCeEEEccCccccc-ccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEeccccc
Confidence 88999999999 554332 332 3678999999999999999999999999997621 125799999999987
Q ss_pred CCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccC
Q 018819 231 TNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIAT 310 (350)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t 310 (350)
.+ .++...|++||++++.+++.++.|+ .+.||+|++|+||+|+|
T Consensus 179 ~~-----------------------------------~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~T 222 (281)
T 3ppi_A 179 EG-----------------------------------QIGQTAYAAAKAGVIGLTIAAARDL-SSAGIRVNTIAPGTMKT 222 (281)
T ss_dssp SC-----------------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCC
T ss_pred CC-----------------------------------CCCCcccHHHHHHHHHHHHHHHHHH-hhcCeEEEEEecCcCCc
Confidence 53 3677899999999999999999999 66799999999999999
Q ss_pred CcccccchhhHHhhhhhhHH-hhh-cCccchhhhhhhcccc
Q 018819 311 TGLFREHIPLFRLLFPPFQK-YIT-KGYVSEDEAGKRLAQV 349 (350)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~-~~~-~~~~s~~~~a~~i~~~ 349 (350)
++........ ...+.. ... .++.+|+|+|+.++++
T Consensus 223 ~~~~~~~~~~----~~~~~~~~~~~~~~~~pedvA~~v~~l 259 (281)
T 3ppi_A 223 PIMESVGEEA----LAKFAANIPFPKRLGTPDEFADAAAFL 259 (281)
T ss_dssp HHHHTTCHHH----HHHHHHTCCSSSSCBCHHHHHHHHHHH
T ss_pred hhhhcccHHH----HHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 8653211110 111111 112 5578999999988764
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-36 Score=269.92 Aligned_cols=223 Identities=12% Similarity=0.140 Sum_probs=175.0
Q ss_pred cCCCEEEEEcCC--CchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 84 LRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 84 l~~~~~lItGgs--~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+++|++|||||+ +|||+++|++|+++|+ +|++++|+. ..++..+++........+++||++|+++++++++++.+.
T Consensus 7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~-~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T 1qsg_A 7 LSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQND-KLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKV 84 (265)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESST-TTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEcCcH-HHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHH
Confidence 688999999999 9999999999999995 899999986 333333333222123478899999999999999999999
Q ss_pred CCCCcEEEEccccCCC---CCCCCC-CCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLP---TAKEPT-FTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~---~~~~~~-~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~ 237 (350)
++++|+||||||+... ..++.+ .+.++|++++++|+.|+++++++++|.|.+ +|+||++||..+..+
T Consensus 85 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~----~g~iv~isS~~~~~~----- 155 (265)
T 1qsg_A 85 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNP----GSALLTLSYLGAERA----- 155 (265)
T ss_dssp CSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE----EEEEEEEECGGGTSB-----
T ss_pred cCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcc----CCEEEEEcchhhccC-----
Confidence 9999999999998642 144556 789999999999999999999999999865 369999999887643
Q ss_pred CCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccc
Q 018819 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317 (350)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~ 317 (350)
.++...|++||++++.+++.++.|+ .++||+||+|+||+|+|++....
T Consensus 156 ------------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~- 203 (265)
T 1qsg_A 156 ------------------------------IPNYNVMGLAKASLEANVRYMANAM-GPEGVRVNAISAGPIRTLAASGI- 203 (265)
T ss_dssp ------------------------------CTTTTHHHHHHHHHHHHHHHHHHHH-TTTTEEEEEEEECCCCCTTGGGS-
T ss_pred ------------------------------CCCchHHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEEeCCCccchhhcc-
Confidence 2567789999999999999999999 67799999999999999875321
Q ss_pred hhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 318 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.................++.+|+|+|+.++++
T Consensus 204 ~~~~~~~~~~~~~~p~~~~~~~~dva~~v~~l 235 (265)
T 1qsg_A 204 KDFRKMLAHCEAVTPIRRTVTIEDVGNSAAFL 235 (265)
T ss_dssp TTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 11111111111111234568999999988754
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-36 Score=269.32 Aligned_cols=213 Identities=21% Similarity=0.299 Sum_probs=168.7
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
..+.+|++|||||++|||+++|++|+++|+ +|++++|+.+..+ .+.++.||++|+++++++++++.+.
T Consensus 17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~-----------~~~~~~~Dl~d~~~v~~~~~~~~~~ 84 (253)
T 2nm0_A 17 RSHMSRSVLVTGGNRGIGLAIARAFADAGD-KVAITYRSGEPPE-----------GFLAVKCDITDTEQVEQAYKEIEET 84 (253)
T ss_dssp ---CCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCT-----------TSEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHhhc-----------cceEEEecCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999995 8999999754321 2678999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||..+..+
T Consensus 85 ~g~iD~lv~nAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~~~~~--------- 152 (253)
T 2nm0_A 85 HGPVEVLIANAGVTKD-QLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAK--KGRVVLISSVVGLLG--------- 152 (253)
T ss_dssp TCSCSEEEEECSCCTT-TC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHT--CEEEEEECCCCCCCC---------
T ss_pred cCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCEEEEECchhhCCC---------
Confidence 9999999999998643 6677889999999999999999999999999998754 479999999988643
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.++...|++||++++.+++.++.|+ .+.||+||+|+||+|+|++... ..+.
T Consensus 153 --------------------------~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~-~~~~- 203 (253)
T 2nm0_A 153 --------------------------SAGQANYAASKAGLVGFARSLAREL-GSRNITFNVVAPGFVDTDMTKV-LTDE- 203 (253)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHHHHHHH-CSSSEEEEEEEECSBCC-----------
T ss_pred --------------------------CCCcHHHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEEeCcCcCcchhh-cCHH-
Confidence 2567899999999999999999999 6779999999999999987532 1110
Q ss_pred HhhhhhhH-HhhhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQ-KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~-~~~~~~~~s~~~~a~~i~~~ 349 (350)
. ...+. .....++.+|+|+|+.++++
T Consensus 204 -~-~~~~~~~~p~~~~~~p~dvA~~i~~l 230 (253)
T 2nm0_A 204 -Q-RANIVSQVPLGRYARPEEIAATVRFL 230 (253)
T ss_dssp -C-HHHHHTTCTTCSCBCHHHHHHHHHHH
T ss_pred -H-HHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 0 00111 11224578999999988653
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=265.18 Aligned_cols=219 Identities=24% Similarity=0.303 Sum_probs=166.0
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
...+++|++|||||++|||+++|++|+++|+ +|++++|+.+.+++..+++. .++.++.||++|.+++++++++
T Consensus 9 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~--- 81 (249)
T 3f9i_A 9 MIDLTGKTSLITGASSGIGSAIARLLHKLGS-KVIISGSNEEKLKSLGNALK---DNYTIEVCNLANKEECSNLISK--- 81 (249)
T ss_dssp CCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC---SSEEEEECCTTSHHHHHHHHHT---
T ss_pred cccCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhc---cCccEEEcCCCCHHHHHHHHHh---
Confidence 4467899999999999999999999999995 99999999888888777764 4688999999999998887764
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
.+++|++|||||+... ..+.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||.++..+
T Consensus 82 -~~~id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~~-------- 149 (249)
T 3f9i_A 82 -TSNLDILVCNAGITSD-TLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKR--YGRIINISSIVGIAG-------- 149 (249)
T ss_dssp -CSCCSEEEECCC--------------CHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCCCC--C--------
T ss_pred -cCCCCEEEECCCCCCC-CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcEEEEEccHHhccC--------
Confidence 4789999999998754 5666788999999999999999999999999998765 479999999988753
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~ 320 (350)
.++...|++||++++.+++.++.|+ .++||++++|+||+|+|++..... +.
T Consensus 150 ---------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~-~~ 200 (249)
T 3f9i_A 150 ---------------------------NPGQANYCASKAGLIGMTKSLSYEV-ATRGITVNAVAPGFIKSDMTDKLN-EK 200 (249)
T ss_dssp ---------------------------CSCSHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBC------CC-HH
T ss_pred ---------------------------CCCCchhHHHHHHHHHHHHHHHHHH-HHcCcEEEEEecCccccCcccccC-HH
Confidence 3677899999999999999999999 567999999999999998753321 11
Q ss_pred HHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 ~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.............+.+|+|+|+.++++
T Consensus 201 --~~~~~~~~~~~~~~~~~~dva~~~~~l 227 (249)
T 3f9i_A 201 --QREAIVQKIPLGTYGIPEDVAYAVAFL 227 (249)
T ss_dssp --HHHHHHHHCTTCSCBCHHHHHHHHHHH
T ss_pred --HHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 111111222345678899999887653
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=267.23 Aligned_cols=226 Identities=19% Similarity=0.173 Sum_probs=168.6
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+.+++|++|||||++|||++++++|+++|+ +|++++|+.+..++..+++...+.++.++.+|++|.++++++++++.+.
T Consensus 10 ~~l~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 88 (266)
T 1xq1_A 10 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSM 88 (266)
T ss_dssp TCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999995 9999999988887777777666678899999999999999999999988
Q ss_pred C-CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 162 G-RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 162 ~-g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
+ +++|+||||||+... .++.+.+.++|++.+++|+.++++++++++|.|.+++ .++||++||..+..+
T Consensus 89 ~~~~id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~~-------- 157 (266)
T 1xq1_A 89 FGGKLDILINNLGAIRS-KPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG--CGNIIFMSSIAGVVS-------- 157 (266)
T ss_dssp HTTCCSEEEEECCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SCEEEEEC---------------
T ss_pred hCCCCcEEEECCCCCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEccchhccC--------
Confidence 8 899999999998643 5677889999999999999999999999999997654 479999999987643
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~ 320 (350)
.++...|++||++++.+++.++.++ .+.||++++|+||+|.|++......+.
T Consensus 158 ---------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~ 209 (266)
T 1xq1_A 158 ---------------------------ASVGSIYSATKGALNQLARNLACEW-ASDGIRANAVAPAVIATPLAEAVYDDE 209 (266)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEECCSCC-----------
T ss_pred ---------------------------CCCCchHHHHHHHHHHHHHHHHHHH-hHhCcEEEEEeeCCCccchhhhhcCHH
Confidence 2466789999999999999999999 567999999999999998753211110
Q ss_pred HHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 ~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
+............+.+|+|+|+.++++
T Consensus 210 --~~~~~~~~~~~~~~~~~~dva~~~~~l 236 (266)
T 1xq1_A 210 --FKKVVISRKPLGRFGEPEEVSSLVAFL 236 (266)
T ss_dssp ----------------CCGGGGHHHHHHH
T ss_pred --HHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 000001111223467899999887653
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-35 Score=263.58 Aligned_cols=230 Identities=21% Similarity=0.214 Sum_probs=185.9
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+.+++|++|||||++|||++++++|+++|+ +|++++|+.+..++..+++...+.++.++.+|++|+++++++++++.+.
T Consensus 9 ~~l~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 87 (260)
T 3awd_A 9 LRLDNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQ 87 (260)
T ss_dssp GCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 457899999999999999999999999995 9999999988777777777666678999999999999999999999998
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|+||||||+.....++.+.+.++|++.+++|+.+++++++++.|.|.+++ .++||++||..+..+.
T Consensus 88 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~~sS~~~~~~~-------- 157 (260)
T 3awd_A 88 EGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQK--QGVIVAIGSMSGLIVN-------- 157 (260)
T ss_dssp HSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTSCC--------
T ss_pred cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcC--CCEEEEEecchhcccC--------
Confidence 999999999999865346777889999999999999999999999999987654 4799999999876431
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
+..+...|++||++++.+++.++.|+ .+.||++++|+||+|+|++...... ..
T Consensus 158 -------------------------~~~~~~~Y~~sK~a~~~~~~~l~~e~-~~~gi~v~~v~pg~v~t~~~~~~~~-~~ 210 (260)
T 3awd_A 158 -------------------------RPQQQAAYNASKAGVHQYIRSLAAEW-APHGIRANAVAPTYIETTLTRFGME-KP 210 (260)
T ss_dssp -------------------------SSSCCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCCTTTHHHHT-CH
T ss_pred -------------------------CCCCccccHHHHHHHHHHHHHHHHHh-hhcCeEEEEEEeeeeccchhhcccC-Ch
Confidence 01123789999999999999999998 5679999999999999987531111 00
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..............+.+|+|+|+.++++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~dva~~~~~l 238 (260)
T 3awd_A 211 ELYDAWIAGTPMGRVGQPDEVASVVQFL 238 (260)
T ss_dssp HHHHHHHHTCTTSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcCCCCCHHHHHHHHHHH
Confidence 1100111111224578999999987653
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-36 Score=268.70 Aligned_cols=224 Identities=12% Similarity=0.114 Sum_probs=176.4
Q ss_pred ccCCCEEEEEcCC--CchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 83 TLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 83 ~l~~~~~lItGgs--~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
.+++|++|||||+ +|||+++|++|+++|+ +|++++|+.+ .++..+++......+.++.+|++|+++++++++++.+
T Consensus 5 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 82 (261)
T 2wyu_A 5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAER-LRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKE 82 (261)
T ss_dssp CCTTCEEEEESCCSSSSHHHHHHHHHHHHTC-EEEEEESCGG-GHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHH-HHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHH
Confidence 5688999999999 9999999999999995 8999999864 2223333322112378899999999999999999999
Q ss_pred cCCCCcEEEEccccCCC---CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~---~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~ 237 (350)
.++++|+||||||+... ..++.+.+.++|++.+++|+.|++++++++.|.|.+ +|+||++||..+..+
T Consensus 83 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~----~g~iv~isS~~~~~~----- 153 (261)
T 2wyu_A 83 AFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLRE----GGGIVTLTYYASEKV----- 153 (261)
T ss_dssp HHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEE----EEEEEEEECGGGTSB-----
T ss_pred HcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhcc----CCEEEEEecccccCC-----
Confidence 99999999999998642 245667899999999999999999999999998864 369999999887643
Q ss_pred CCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccc
Q 018819 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317 (350)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~ 317 (350)
.++...|++||++++.+++.++.|+ .++||+||+|+||+|+|++....
T Consensus 154 ------------------------------~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~- 201 (261)
T 2wyu_A 154 ------------------------------VPKYNVMAIAKAALEASVRYLAYEL-GPKGVRVNAISAGPVRTVAARSI- 201 (261)
T ss_dssp ------------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCCCCTGGGGC-
T ss_pred ------------------------------CCCchHHHHHHHHHHHHHHHHHHHH-hhhCcEEEEEeeCCCcCchhhhc-
Confidence 3567789999999999999999999 66799999999999999864321
Q ss_pred hhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 318 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.................++.+|+|+|+.++++
T Consensus 202 ~~~~~~~~~~~~~~p~~~~~~~~dva~~v~~l 233 (261)
T 2wyu_A 202 PGFTKMYDRVAQTAPLRRNITQEEVGNLGLFL 233 (261)
T ss_dssp TTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 11111111111112234578999999988753
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-36 Score=268.63 Aligned_cols=224 Identities=19% Similarity=0.178 Sum_probs=182.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEE-EecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIM-ACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~-~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
.+++|++|||||++|||+++|++|+++|+ +|++ ..|+.+..++..+++...+.++.++.+|++|.++++++++++.+.
T Consensus 4 ~l~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (255)
T 3icc_A 4 MLKGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNE 82 (255)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCSHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHHH
Confidence 36889999999999999999999999996 6666 577888888888888777788999999999999999999988776
Q ss_pred C------CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCC
Q 018819 162 G------RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLA 235 (350)
Q Consensus 162 ~------g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~ 235 (350)
+ +++|+||||||+.. ...+.+.+.++|++++++|+.|+++++++++|.|.+ .|+||++||.++..+
T Consensus 83 ~~~~~~~~~id~lv~nAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~----~~~iv~isS~~~~~~--- 154 (255)
T 3icc_A 83 LQNRTGSTKFDILINNAGIGP-GAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRD----NSRIINISSAATRIS--- 154 (255)
T ss_dssp HHHHHSSSCEEEEEECCCCCC-CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEE----EEEEEEECCGGGTSC---
T ss_pred hcccccCCcccEEEECCCCCC-CCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCC----CCEEEEeCChhhccC---
Confidence 5 35999999999864 367778899999999999999999999999999854 369999999988753
Q ss_pred CCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccc
Q 018819 236 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 315 (350)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~ 315 (350)
.++...|++||++++.+++.++.|+ .++||+|++|+||+|+|++...
T Consensus 155 --------------------------------~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~ 201 (255)
T 3icc_A 155 --------------------------------LPDFIAYSMTKGAINTMTFTLAKQL-GARGITVNAILPGFVKTDMNAE 201 (255)
T ss_dssp --------------------------------CTTBHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBCCSSSTT
T ss_pred --------------------------------CCCcchhHHhHHHHHHHHHHHHHHH-HhcCeEEEEEEEeeecccchhh
Confidence 3678899999999999999999999 6679999999999999997643
Q ss_pred cchhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 316 EHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.... ..............++.+|+|+|+.++++
T Consensus 202 ~~~~-~~~~~~~~~~~~~~~~~~~~dva~~~~~l 234 (255)
T 3icc_A 202 LLSD-PMMKQYATTISAFNRLGEVEDIADTAAFL 234 (255)
T ss_dssp TTTS-HHHHHHHHHTSTTSSCBCHHHHHHHHHHH
T ss_pred hccc-HHHHHhhhccCCcCCCCCHHHHHHHHHHH
Confidence 2111 00000011111235577999999987654
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-35 Score=265.22 Aligned_cols=215 Identities=19% Similarity=0.221 Sum_probs=176.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
++++|++|||||++|||+++|+.|+++|+ +|++++|+.+. +.++.++.+|++|+++++++++++.+.+
T Consensus 5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~-----------~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 72 (264)
T 2dtx_A 5 DLRDKVVIVTGASMGIGRAIAERFVDEGS-KVIDLSIHDPG-----------EAKYDHIECDVTNPDQVKASIDHIFKEY 72 (264)
T ss_dssp GGTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSCCC-----------SCSSEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEecCccc-----------CCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 56899999999999999999999999995 89999997543 3468899999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||.++..+
T Consensus 73 g~iD~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~~---------- 139 (264)
T 2dtx_A 73 GSISVLVNNAGIESY-GKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSR--DPSIVNISSVQASII---------- 139 (264)
T ss_dssp SCCCEEEECCCCCCC-BCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSS--SCEEEEECCGGGTSC----------
T ss_pred CCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CcEEEEECCchhccC----------
Confidence 999999999998644 6778899999999999999999999999999998765 479999999987643
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch----
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI---- 318 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~---- 318 (350)
.++...|++||++++.+++.++.|+ .+. |+||+|+||+|+|++......
T Consensus 140 -------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~-i~vn~v~PG~v~t~~~~~~~~~~~~ 192 (264)
T 2dtx_A 140 -------------------------TKNASAYVTSKHAVIGLTKSIALDY-APL-LRCNAVCPATIDTPLVRKAAELEVG 192 (264)
T ss_dssp -------------------------CTTBHHHHHHHHHHHHHHHHHHHHH-TTT-SEEEEEEECSBCSHHHHHHHHHHHC
T ss_pred -------------------------CCCchhHHHHHHHHHHHHHHHHHHh-cCC-cEEEEEEeCCCcCcchhhhhhcccc
Confidence 3567899999999999999999999 566 999999999999986422100
Q ss_pred -hhH---HhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 319 -PLF---RLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 -~~~---~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
+.. .............++.+|+|+|+.++++
T Consensus 193 ~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~~v~~l 227 (264)
T 2dtx_A 193 SDPMRIEKKISEWGHEHPMQRIGKPQEVASAVAFL 227 (264)
T ss_dssp SCHHHHHHHHHHHHHHSTTSSCBCHHHHHHHHHHH
T ss_pred cCchhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 000 0000001111235578999999988753
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=285.18 Aligned_cols=253 Identities=19% Similarity=0.194 Sum_probs=192.6
Q ss_pred ccchHHHHHHhhcc--cCCceecccccCCCCccccCCCcCccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 43 FSSSALRCKREFSQ--RNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 43 ~~~~a~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
....+++.+++..+ +++.++.....+.. .+......+++|++|||||++|||+++|++|+++|+ +|++++|+
T Consensus 173 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~l~gk~~LVTGgsgGIG~aiA~~La~~Ga-~Vvl~~r~ 246 (454)
T 3u0b_A 173 GLESTMRFILSAKSAYVDGQVFRVGAADST-----PPADWDKPLDGKVAVVTGAARGIGATIAEVFARDGA-TVVAIDVD 246 (454)
T ss_dssp GGHHHHHHHSSGGGTTCCSEEEEECSCCCC-----CCSCTTSTTTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECG
T ss_pred HHHHHHHHhhCCceeEEcCEEEEecCCCCC-----CCCccccCCCCCEEEEeCCchHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 45678888876655 77776644332211 112223456899999999999999999999999997 89999886
Q ss_pred hh--HHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC-CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhh
Q 018819 121 FL--KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP-LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNH 197 (350)
Q Consensus 121 ~~--~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~-id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~ 197 (350)
.. ..++..+++ .+.++.||++|.++++++++++.+.+++ ||+||||||+... ..+.+++.++|++++++|+
T Consensus 247 ~~~~~l~~~~~~~-----~~~~~~~Dvtd~~~v~~~~~~~~~~~g~~id~lV~nAGv~~~-~~~~~~~~~~~~~~~~~nv 320 (454)
T 3u0b_A 247 GAAEDLKRVADKV-----GGTALTLDVTADDAVDKITAHVTEHHGGKVDILVNNAGITRD-KLLANMDEKRWDAVIAVNL 320 (454)
T ss_dssp GGHHHHHHHHHHH-----TCEEEECCTTSTTHHHHHHHHHHHHSTTCCSEEEECCCCCCC-CCGGGCCHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHc-----CCeEEEEecCCHHHHHHHHHHHHHHcCCCceEEEECCcccCC-CccccCCHHHHHHHHHHHH
Confidence 42 233333333 3568999999999999999999998876 9999999999754 7788899999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhh
Q 018819 198 LGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDS 277 (350)
Q Consensus 198 ~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~as 277 (350)
.|++++++++.+.|.+++ .++||++||+++..+ .+++..|++|
T Consensus 321 ~g~~~l~~~~~~~~~~~~--~g~iV~iSS~a~~~g-----------------------------------~~g~~~Yaas 363 (454)
T 3u0b_A 321 LAPQRLTEGLVGNGTIGE--GGRVIGLSSMAGIAG-----------------------------------NRGQTNYATT 363 (454)
T ss_dssp HHHHHHHHHHHHTTSSCT--TCEEEEECCHHHHHC-----------------------------------CTTCHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcC--CCEEEEEeChHhCCC-----------------------------------CCCCHHHHHH
Confidence 999999999999887655 579999999998764 3678999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhhhhhhHH-hhhcCccchhhhhhhcccc
Q 018819 278 KVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQK-YITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 278 Kaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~a~~i~~~ 349 (350)
|+++++|+++++.|+ .++||+||+|+||+|+|++........ + ..... ....+..+|+|+|+.++++
T Consensus 364 Kaal~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~~~~-~---~~~~~~~~l~r~g~pedvA~~v~fL 431 (454)
T 3u0b_A 364 KAGMIGLAEALAPVL-ADKGITINAVAPGFIETKMTEAIPLAT-R---EVGRRLNSLFQGGQPVDVAELIAYF 431 (454)
T ss_dssp HHHHHHHHHHHHHHH-HTTTCEEEEEEECSBCC-----------C---HHHHHSBTTSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-hhcCcEEEEEEcCcccChhhhhcchhh-H---HHHHhhccccCCCCHHHHHHHHHHH
Confidence 999999999999999 677999999999999998753211110 0 00011 1123456899999988764
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=267.63 Aligned_cols=226 Identities=16% Similarity=0.180 Sum_probs=184.5
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
.+.+++|++|||||++|||+++++.|+++|+ +|++++|+.+..++..+++...+.++.++.||++|+++++++++++.+
T Consensus 39 ~~~l~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 117 (285)
T 2c07_A 39 YYCGENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILT 117 (285)
T ss_dssp CCCCSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999999999995 888899998888877777766677899999999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
.++++|+||||||+... .++.+.+.++|++.+++|+.|++++++.++|.|.+++ .++||++||..+..+
T Consensus 118 ~~~~id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~~-------- 186 (285)
T 2c07_A 118 EHKNVDILVNNAGITRD-NLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR--YGRIINISSIVGLTG-------- 186 (285)
T ss_dssp HCSCCCEEEECCCCCCC-CCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT--CEEEEEECCTHHHHC--------
T ss_pred hcCCCCEEEECCCCCCC-CchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC--CCEEEEECChhhccC--------
Confidence 99999999999998643 6777889999999999999999999999999997654 479999999987643
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~ 320 (350)
.++...|++||++++.+++.++.|+ .+.||++++|+||+|+|++.... .+.
T Consensus 187 ---------------------------~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~-~~~ 237 (285)
T 2c07_A 187 ---------------------------NVGQANYSSSKAGVIGFTKSLAKEL-ASRNITVNAIAPGFISSDMTDKI-SEQ 237 (285)
T ss_dssp ---------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCC-----C-CHH
T ss_pred ---------------------------CCCCchHHHHHHHHHHHHHHHHHHH-HHhCcEEEEEEeCcEecCchhhc-CHH
Confidence 2567899999999999999999999 56799999999999999865321 111
Q ss_pred HHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 ~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.. ..........++.+|+|+|+.++++
T Consensus 238 ~~--~~~~~~~~~~~~~~~~dvA~~~~~l 264 (285)
T 2c07_A 238 IK--KNIISNIPAGRMGTPEEVANLACFL 264 (285)
T ss_dssp HH--HHHHTTCTTSSCBCHHHHHHHHHHH
T ss_pred HH--HHHHhhCCCCCCCCHHHHHHHHHHH
Confidence 00 0000111224578999999987653
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=267.49 Aligned_cols=216 Identities=19% Similarity=0.214 Sum_probs=184.0
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
++.+++|++|||||++|||++++++|+++|+ +|++++|+.+..++..++++..+.++.++.+|++|+++++++++++.+
T Consensus 26 ~~~l~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 104 (272)
T 1yb1_A 26 RKSVTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKA 104 (272)
T ss_dssp CCCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999999999995 899999998888877777766667899999999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
.++++|+||||||+... .++.+.+.++|++.+++|+.|++++++.++|.|.+++ .++||++||..+..+
T Consensus 105 ~~g~iD~li~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~~-------- 173 (272)
T 1yb1_A 105 EIGDVSILVNNAGVVYT-SDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNN--HGHIVTVASAAGHVS-------- 173 (272)
T ss_dssp HTCCCSEEEECCCCCCC-CCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCCC-CCC--------
T ss_pred HCCCCcEEEECCCcCCC-cchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CCEEEEEechhhcCC--------
Confidence 99999999999998654 5677788999999999999999999999999998765 479999999987642
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhc--CCCCcEEEEeeCCcccCCcccccch
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFH--EETGIAFASLYPGCIATTGLFREHI 318 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~~gi~v~~v~PG~v~t~~~~~~~~ 318 (350)
.++...|++||++++.+++.++.|+. .+.||++++|+||+|+|++.....
T Consensus 174 ---------------------------~~~~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~~~~~~- 225 (272)
T 1yb1_A 174 ---------------------------VPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNPS- 225 (272)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTCTH-
T ss_pred ---------------------------CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccccc-
Confidence 25678999999999999999999983 156999999999999998742110
Q ss_pred hhHHhhhhhhHHhhhcCccchhhhhhhccc
Q 018819 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
. ....+.+|+|+|+.+++
T Consensus 226 -------~-----~~~~~~~~~dva~~i~~ 243 (272)
T 1yb1_A 226 -------T-----SLGPTLEPEEVVNRLMH 243 (272)
T ss_dssp -------H-----HHCCCCCHHHHHHHHHH
T ss_pred -------c-----cccCCCCHHHHHHHHHH
Confidence 0 12346789999888764
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-35 Score=259.72 Aligned_cols=212 Identities=19% Similarity=0.256 Sum_probs=182.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCc------EEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHH
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKW------HIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~------~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
+|++|||||++|||++++++|+++|+. +|++++|+.+..++..+++...+.++.++.+|++|+++++++++++.
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 81 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIV 81 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHHH
Confidence 579999999999999999999999943 89999999888888777776667789999999999999999999999
Q ss_pred HcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCC
Q 018819 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (350)
+.++++|+||||||+... .++.+.+.++|++.+++|+.|+++++++++|.|.+++ .|+||++||..+..+
T Consensus 82 ~~~g~id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~~------- 151 (244)
T 2bd0_A 82 ERYGHIDCLVNNAGVGRF-GALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQH--SGHIFFITSVAATKA------- 151 (244)
T ss_dssp HHTSCCSEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTSC-------
T ss_pred HhCCCCCEEEEcCCcCCc-CccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC--CCEEEEEecchhcCC-------
Confidence 999999999999998643 6677889999999999999999999999999997654 479999999987643
Q ss_pred CCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchh
Q 018819 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (350)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~ 319 (350)
.++...|++||++++.+++.++.++ .+.||++++|+||+|+|++......+
T Consensus 152 ----------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~ 202 (244)
T 2bd0_A 152 ----------------------------FRHSSIYCMSKFGQRGLVETMRLYA-RKCNVRITDVQPGAVYTPMWGKVDDE 202 (244)
T ss_dssp ----------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-TTTTEEEEEEEECCBCSTTTCCCCST
T ss_pred ----------------------------CCCCchhHHHHHHHHHHHHHHHHHh-hccCcEEEEEECCCccchhhhhcccc
Confidence 3567899999999999999999998 67799999999999999975321110
Q ss_pred hHHhhhhhhHHhhhcCccchhhhhhhccc
Q 018819 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
. ...+.+|+|+|+.+++
T Consensus 203 -------~-----~~~~~~~~dva~~~~~ 219 (244)
T 2bd0_A 203 -------M-----QALMMMPEDIAAPVVQ 219 (244)
T ss_dssp -------T-----GGGSBCHHHHHHHHHH
T ss_pred -------c-----cccCCCHHHHHHHHHH
Confidence 0 1246899999988765
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-36 Score=265.92 Aligned_cols=214 Identities=21% Similarity=0.268 Sum_probs=168.6
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
..+++|++|||||++|||++++++|+++|+ +|++++|+.+..++ +..+.||++|+++++++++++.+.
T Consensus 11 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~-----------~~~~~~D~~~~~~~~~~~~~~~~~ 78 (247)
T 1uzm_A 11 PPFVSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGAPKG-----------LFGVEVDVTDSDAVDRAFTAVEEH 78 (247)
T ss_dssp CCCCCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTT-----------SEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHH-----------hcCeeccCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999995 89999998643221 224889999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||..+..+
T Consensus 79 ~g~id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~~--------- 146 (247)
T 1uzm_A 79 QGPVEVLVSNAGLSAD-AFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNK--FGRMIFIGSVSGLWG--------- 146 (247)
T ss_dssp HSSCSEEEEECSCCC------CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCCCC------------
T ss_pred cCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CCEEEEECCHhhccC---------
Confidence 9999999999998643 6677899999999999999999999999999998765 479999999988753
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.++...|++||++++.+++.++.|+ .+.||+||+|+||+|+|++... ..+.
T Consensus 147 --------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~-~~~~- 197 (247)
T 1uzm_A 147 --------------------------IGNQANYAASKAGVIGMARSIAREL-SKANVTANVVAPGYIDTDMTRA-LDER- 197 (247)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHH-SCHH-
T ss_pred --------------------------CCCChhHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEEeCCCcccchhh-cCHH-
Confidence 2567899999999999999999999 5679999999999999986422 1110
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
............++.+|+|+|+.++++
T Consensus 198 -~~~~~~~~~p~~~~~~~~dvA~~~~~l 224 (247)
T 1uzm_A 198 -IQQGALQFIPAKRVGTPAEVAGVVSFL 224 (247)
T ss_dssp -HHHHHGGGCTTCSCBCHHHHHHHHHHH
T ss_pred -HHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 000001111224578999999988653
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=263.59 Aligned_cols=217 Identities=19% Similarity=0.226 Sum_probs=172.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|++|||||++|||++++++|+++|+ +|++++|+.++.++.. ++ .++.++.+|++|+++++++ .+.+
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~-~~----~~~~~~~~D~~~~~~~~~~----~~~~ 72 (246)
T 2ag5_A 3 RLDGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELE-KY----PGIQTRVLDVTKKKQIDQF----ANEV 72 (246)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGGG-GS----TTEEEEECCTTCHHHHHHH----HHHC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH-hc----cCceEEEeeCCCHHHHHHH----HHHh
Confidence 46889999999999999999999999995 9999999876655443 22 2688999999999998844 4456
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|+||||||+... .++.+.+.++|++.+++|+.|+++++++++|.|.+++ .|+||++||..+..+.
T Consensus 73 ~~id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~~~--------- 140 (246)
T 2ag5_A 73 ERLDVLFNVAGFVHH-GTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQK--SGNIINMSSVASSVKG--------- 140 (246)
T ss_dssp SCCSEEEECCCCCCC-BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCSBTTTBC---------
T ss_pred CCCCEEEECCccCCC-CCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CceEEEEechHhCcCC---------
Confidence 899999999998654 5677889999999999999999999999999997754 4799999999876431
Q ss_pred CccccccccccCCCCCCCcccCCCCCC-chhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch---
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFD-GAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI--- 318 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~--- 318 (350)
+ +...|++||++++.+++.++.|+ .+.||++|+|+||+|+|++......
T Consensus 141 --------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~ 193 (246)
T 2ag5_A 141 --------------------------VVNRCVYSTTKAAVIGLTKSVAADF-IQQGIRCNCVCPGTVDTPSLQERIQARG 193 (246)
T ss_dssp --------------------------CTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESCEECHHHHHHHHHSS
T ss_pred --------------------------CCCCccHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEeeCcCcCcchhhhhhccc
Confidence 3 66799999999999999999999 6679999999999999986422100
Q ss_pred hhHHhhhhhhH-HhhhcCccchhhhhhhcccc
Q 018819 319 PLFRLLFPPFQ-KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ~~~~~~~~~~~-~~~~~~~~s~~~~a~~i~~~ 349 (350)
..... ...+. .....++.+|+|+|+.++++
T Consensus 194 ~~~~~-~~~~~~~~~~~~~~~~~dvA~~v~~l 224 (246)
T 2ag5_A 194 NPEEA-RNDFLKRQKTGRFATAEEIAMLCVYL 224 (246)
T ss_dssp SHHHH-HHHHHHTCTTSSCEEHHHHHHHHHHH
T ss_pred CcHHH-HHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 00000 01111 11234578999999988754
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-35 Score=260.13 Aligned_cols=223 Identities=21% Similarity=0.213 Sum_probs=182.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHh-ccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA-GMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l-~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+|++|||||++|||++++++|+++|+ +|++++|+.+..++..+++ ...+.++.++.+|++|+++++++++++.+.+++
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARGD-RVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGA 80 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 57999999999999999999999995 8999999988887777776 444567999999999999999999999999999
Q ss_pred CcEEEEccccCCCCCC---CCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 165 LDVLVCNAAVYLPTAK---EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~---~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
+|+||||||+... .+ +.+.+.++|++.+++|+.+++++++.++|.|.+++ .++||++||..+..+
T Consensus 81 id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~isS~~~~~~--------- 148 (250)
T 2cfc_A 81 IDVLVNNAGITGN-SEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQG--AGVIVNIASVASLVA--------- 148 (250)
T ss_dssp CCEEEECCCCCCC-TTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTSC---------
T ss_pred CCEEEECCCCCCC-CCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC--CCEEEEECChhhccC---------
Confidence 9999999998643 34 66788999999999999999999999999997754 479999999987643
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.++...|++||++++.+++.++.|+ .+.||++++|+||+|+|++..... +..
T Consensus 149 --------------------------~~~~~~Y~~sK~a~~~~~~~l~~e~-~~~gi~v~~v~Pg~v~t~~~~~~~-~~~ 200 (250)
T 2cfc_A 149 --------------------------FPGRSAYTTSKGAVLQLTKSVAVDY-AGSGIRCNAVCPGMIETPMTQWRL-DQP 200 (250)
T ss_dssp --------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSTTTHHHH-TSH
T ss_pred --------------------------CCCchhHHHHHHHHHHHHHHHHHHh-cccCeEEEEEEeCcCccCcccccc-CCH
Confidence 2567899999999999999999999 567999999999999998753211 100
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.+............+.+|+|+|+.++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~dva~~~~~l 228 (250)
T 2cfc_A 201 ELRDQVLARIPQKEIGTAAQVADAVMFL 228 (250)
T ss_dssp HHHHHHHTTCTTCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 0000001111224567999999987653
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-35 Score=261.75 Aligned_cols=226 Identities=19% Similarity=0.181 Sum_probs=184.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEec-ChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r-~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
++++|++|||||++|||++++++|+++|+ +|++++| +.+..++..+++...+.++.++.||++|+++++++++++.+.
T Consensus 4 ~l~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (261)
T 1gee_A 4 DLEGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKE 82 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 56889999999999999999999999995 8999999 777777777777655678899999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|+||||||+... .++.+.+.++|++.+++|+.++++++++++|.|.+++. .++||++||..+..+
T Consensus 83 ~g~id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~-~~~iv~isS~~~~~~--------- 151 (261)
T 1gee_A 83 FGKLDVMINNAGLENP-VSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDI-KGTVINMSSVHEKIP--------- 151 (261)
T ss_dssp HSCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-CCEEEEECCGGGTSC---------
T ss_pred cCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCC-CCEEEEeCCHHhcCC---------
Confidence 9999999999998643 56677899999999999999999999999999987531 369999999887642
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.++...|++||++++.+++.++.++ .+.||++++|+||+|+|++..... +..
T Consensus 152 --------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~-~~~ 203 (261)
T 1gee_A 152 --------------------------WPLFVHYAASKGGMKLMTETLALEY-APKGIRVNNIGPGAINTPINAEKF-ADP 203 (261)
T ss_dssp --------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCSGGGHHHH-HSH
T ss_pred --------------------------CCCccHHHHHHHHHHHHHHHHHHHh-cccCeEEEEEeeCCcCCchhhhcc-cCh
Confidence 3567899999999999999999999 567999999999999998653211 000
Q ss_pred HhhhhhhH-HhhhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQ-KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~-~~~~~~~~s~~~~a~~i~~~ 349 (350)
... ..+. ......+.+|+|+|+.++++
T Consensus 204 ~~~-~~~~~~~~~~~~~~~~dva~~~~~l 231 (261)
T 1gee_A 204 EQR-ADVESMIPMGYIGEPEEIAAVAAWL 231 (261)
T ss_dssp HHH-HHHHTTCTTSSCBCHHHHHHHHHHH
T ss_pred hHH-HHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 000 0111 11124567999999988653
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=259.98 Aligned_cols=204 Identities=20% Similarity=0.192 Sum_probs=166.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
|++|||||++|||+++|++|+++|+ +|++++|+.+.+++..+++ +.++.++.+|++|.++++++++++.+. .|
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~---~d 74 (230)
T 3guy_A 2 SLIVITGASSGLGAELAKLYDAEGK-ATYLTGRSESKLSTVTNCL---SNNVGYRARDLASHQEVEQLFEQLDSI---PS 74 (230)
T ss_dssp -CEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTC---SSCCCEEECCTTCHHHHHHHHHSCSSC---CS
T ss_pred CEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHH---hhccCeEeecCCCHHHHHHHHHHHhhc---CC
Confidence 5899999999999999999999996 8999999988888777766 457889999999999999998876543 49
Q ss_pred EEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccc
Q 018819 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (350)
Q Consensus 167 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (350)
+||||||+.. ..++.+.+.++|++.+++|+.|+++++++++|.|.+++ ++||++||..+..+
T Consensus 75 ~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~---~~iv~isS~~~~~~-------------- 136 (230)
T 3guy_A 75 TVVHSAGSGY-FGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQP---VNVVMIMSTAAQQP-------------- 136 (230)
T ss_dssp EEEECCCCCC-CSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC---CEEEEECCGGGTSC--------------
T ss_pred EEEEeCCcCC-CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CeEEEEeecccCCC--------------
Confidence 9999999865 36778899999999999999999999999999998764 59999999988753
Q ss_pred cccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhhhh
Q 018819 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFP 326 (350)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~ 326 (350)
.++...|++||++++.+++.++.|+ .++||+||+|+||+|+|++......
T Consensus 137 ---------------------~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~-------- 186 (230)
T 3guy_A 137 ---------------------KAQESTYCAVKWAVKGLIESVRLEL-KGKPMKIIAVYPGGMATEFWETSGK-------- 186 (230)
T ss_dssp ---------------------CTTCHHHHHHHHHHHHHHHHHHHHT-TTSSCEEEEEEECCC------------------
T ss_pred ---------------------CCCCchhHHHHHHHHHHHHHHHHHH-HhcCeEEEEEECCcccChHHHhcCC--------
Confidence 3577899999999999999999999 6779999999999999986532110
Q ss_pred hhHHhhhcCccchhhhhhhccc
Q 018819 327 PFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 327 ~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
.....++.+|+|+|+.+++
T Consensus 187 ---~~~~~~~~~~~dvA~~i~~ 205 (230)
T 3guy_A 187 ---SLDTSSFMSAEDAALMIHG 205 (230)
T ss_dssp ---------CCCHHHHHHHHHH
T ss_pred ---CCCcccCCCHHHHHHHHHH
Confidence 0112456899999998876
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-35 Score=263.37 Aligned_cols=228 Identities=17% Similarity=0.133 Sum_probs=182.7
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
.+++++|++|||||++|||++++++|+++|+ +|++++|+.+..++..+.+...+.++.++.+|++|.++++++++++.+
T Consensus 29 ~~~l~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 107 (279)
T 3ctm_A 29 LFSLKGKVASVTGSSGGIGWAVAEAYAQAGA-DVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQQEK 107 (279)
T ss_dssp GGCCTTCEEEETTTTSSHHHHHHHHHHHHTC-EEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHH
Confidence 3568899999999999999999999999995 899999987666666655554466789999999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCC-CCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEP-TFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~-~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (350)
.++++|+||||||+.....++. +.+.++|++.+++|+.|++++++.+++.|.+++ .++||++||..+..+.
T Consensus 108 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~~~iv~isS~~~~~~~------ 179 (279)
T 3ctm_A 108 DFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNG--KGSLIITSSISGKIVN------ 179 (279)
T ss_dssp HHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCCTTSCC-------
T ss_pred HhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCeEEEECchHhccCC------
Confidence 8999999999999865424555 788999999999999999999999999998754 4799999999876421
Q ss_pred CCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchh
Q 018819 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (350)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~ 319 (350)
+.++...|++||++++.+++.++.|+ .+.| ++++|+||+|+|++.... .+
T Consensus 180 ---------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~~-~v~~v~Pg~v~t~~~~~~-~~ 229 (279)
T 3ctm_A 180 ---------------------------IPQLQAPYNTAKAACTHLAKSLAIEW-APFA-RVNTISPGYIDTDITDFA-SK 229 (279)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHHHHHHHHHT-TTTC-EEEEEEECSBSSTTTSSC-CH
T ss_pred ---------------------------CCCCcccHHHHHHHHHHHHHHHHHHh-cccC-CEEEEeccCCcccccccc-Ch
Confidence 12567899999999999999999999 5668 999999999999875221 11
Q ss_pred hHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
. ............++.+|+|+|+.++++
T Consensus 230 ~--~~~~~~~~~p~~~~~~~~dvA~~~~~l 257 (279)
T 3ctm_A 230 D--MKAKWWQLTPLGREGLTQELVGGYLYL 257 (279)
T ss_dssp H--HHHHHHHHSTTCSCBCGGGTHHHHHHH
T ss_pred H--HHHHHHHhCCccCCcCHHHHHHHHHHH
Confidence 1 001111112234578999999987653
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-35 Score=259.17 Aligned_cols=226 Identities=21% Similarity=0.219 Sum_probs=183.5
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
++++|++|||||++|||++++++|+++|+ +|++++|+.+..++..+++... .++.++.+|++|+++++++++++.+.+
T Consensus 3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (251)
T 1zk4_A 3 RLDGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTP-DQIQFFQHDSSDEDGWTKLFDATEKAF 80 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCT-TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhcc-CceEEEECCCCCHHHHHHHHHHHHHHh
Confidence 46889999999999999999999999995 8999999988777777766543 578999999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|+||||||+... .++.+.+.++|++.+++|+.|++++++.++|.|.+++. +++||++||..+..+
T Consensus 81 ~~id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~-~~~iv~isS~~~~~~---------- 148 (251)
T 1zk4_A 81 GPVSTLVNNAGIAVN-KSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGL-GASIINMSSIEGFVG---------- 148 (251)
T ss_dssp SSCCEEEECCCCCCC-CCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSS-CEEEEEECCGGGTSC----------
T ss_pred CCCCEEEECCCCCCC-CChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCC-CCEEEEeCCchhccC----------
Confidence 999999999998643 66778899999999999999999999999999987641 169999999987643
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhc-CCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFH-EETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~-~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.++...|++||++++.+++.++.|+. .+.||++++|+||+|+|++.... .+..
T Consensus 149 -------------------------~~~~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~~v~Pg~v~t~~~~~~-~~~~ 202 (251)
T 1zk4_A 149 -------------------------DPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDL-PGAE 202 (251)
T ss_dssp -------------------------CTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTS-TTHH
T ss_pred -------------------------CCCCccchHHHHHHHHHHHHHHHHhcccCCCeEEEEEeeCcCcchhhhhc-Cchh
Confidence 25678999999999999999999983 16799999999999999865321 1100
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.. ...........+.+|+|+|+.++++
T Consensus 203 ~~-~~~~~~~~~~~~~~~~dva~~~~~l 229 (251)
T 1zk4_A 203 EA-MSQRTKTPMGHIGEPNDIAYICVYL 229 (251)
T ss_dssp HH-HTSTTTCTTSSCBCHHHHHHHHHHH
T ss_pred hh-HHHhhcCCCCCCcCHHHHHHHHHHH
Confidence 00 0000011224567999999887653
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=260.89 Aligned_cols=227 Identities=19% Similarity=0.230 Sum_probs=183.8
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+.+++|++|||||++|||++++++|+++|+ +|++++|+.+..++..+++... .++.++.+|++|+++++++++++.+.
T Consensus 12 ~~l~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~ 89 (278)
T 2bgk_A 12 NRLQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSP-DVISFVHCDVTKDEDVRNLVDTTIAK 89 (278)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCT-TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccccCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCChhHHHHHHHHhCCC-CceEEEECCCCCHHHHHHHHHHHHHH
Confidence 457899999999999999999999999995 8999999987777766666433 37899999999999999999999999
Q ss_pred CCCCcEEEEccccCCC-CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
++++|+||||||+... ..++.+.+.++|++.+++|+.++++++++++|.|.+++ .|+||++||..+..+
T Consensus 90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~~-------- 159 (278)
T 2bgk_A 90 HGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAK--KGSIVFTASISSFTA-------- 159 (278)
T ss_dssp HSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGT--CEEEEEECCGGGTCC--------
T ss_pred cCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC--CCeEEEEeeccccCC--------
Confidence 9999999999998642 24677889999999999999999999999999998755 479999999987643
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCC-chhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFD-GAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~ 319 (350)
.+ +...|++||++++.+++.++.|+ .+.||++++|+||+|.|++.......
T Consensus 160 ---------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~ 211 (278)
T 2bgk_A 160 ---------------------------GEGVSHVYTATKHAVLGLTTSLCTEL-GEYGIRVNCVSPYIVASPLLTDVFGV 211 (278)
T ss_dssp ---------------------------CTTSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESCCSCCCCTTSSSC
T ss_pred ---------------------------CCCCCcchHHHHHHHHHHHHHHHHHH-hhcCcEEEEEEeceecchhhhhhccc
Confidence 13 56789999999999999999999 56799999999999999875332110
Q ss_pred hHHhhhhhhHHh---hhcCccchhhhhhhcccc
Q 018819 320 LFRLLFPPFQKY---ITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 320 ~~~~~~~~~~~~---~~~~~~s~~~~a~~i~~~ 349 (350)
.... ...+... ....+.+|+|+|+.++++
T Consensus 212 ~~~~-~~~~~~~~~~~~~~~~~~~dva~~~~~l 243 (278)
T 2bgk_A 212 DSSR-VEELAHQAANLKGTLLRAEDVADAVAYL 243 (278)
T ss_dssp CHHH-HHHHHHHTCSSCSCCCCHHHHHHHHHHH
T ss_pred chhH-HHHhhhcccccccccCCHHHHHHHHHHH
Confidence 0000 0111111 124478999999987653
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=261.34 Aligned_cols=230 Identities=18% Similarity=0.249 Sum_probs=183.9
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCC--CceEEEEccCCCHHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK--ENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~--~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
..+++|++|||||++|||+++++.|+++|+ +|++++|+.+..++..+++...+ .++.++.+|++|+++++++++++.
T Consensus 28 ~~l~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 106 (279)
T 1xg5_A 28 ERWRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIR 106 (279)
T ss_dssp GGGTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 457899999999999999999999999995 89999999888777777665443 468889999999999999999999
Q ss_pred HcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCC
Q 018819 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (350)
+.++++|+||||||+... ..+.+.+.++|++.+++|+.+++++++.+++.|.+++.+.|+||++||..+...
T Consensus 107 ~~~g~iD~vi~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~~------- 178 (279)
T 1xg5_A 107 SQHSGVDICINNAGLARP-DTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRV------- 178 (279)
T ss_dssp HHHCCCSEEEECCCCCCC-CCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSC-------
T ss_pred HhCCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhccc-------
Confidence 989999999999998644 667788999999999999999999999999999876422379999999987521
Q ss_pred CCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhc-CCCCcEEEEeeCCcccCCcccccch
Q 018819 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFH-EETGIAFASLYPGCIATTGLFREHI 318 (350)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~-~~~gi~v~~v~PG~v~t~~~~~~~~ 318 (350)
.+.++...|++||++++.+++.++.|+. ...||++++|+||+|+|++......
T Consensus 179 --------------------------~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~ 232 (279)
T 1xg5_A 179 --------------------------LPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHD 232 (279)
T ss_dssp --------------------------CSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTT
T ss_pred --------------------------CCCCCCchhHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEecCcccchhhhhhcc
Confidence 0235678999999999999999999983 1679999999999999986422110
Q ss_pred hhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.... .........++.+|+|+|+.++++
T Consensus 233 ~~~~---~~~~~~~~~~~~~~~dvA~~i~~l 260 (279)
T 1xg5_A 233 KDPE---KAAATYEQMKCLKPEDVAEAVIYV 260 (279)
T ss_dssp TCHH---HHHHHHC---CBCHHHHHHHHHHH
T ss_pred cChh---HHhhhcccccCCCHHHHHHHHHHH
Confidence 0000 001111123468999999988753
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-35 Score=269.23 Aligned_cols=226 Identities=22% Similarity=0.276 Sum_probs=167.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCC-CceEEEEccCCCH-HHHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDLASL-DSVRQFVDTFRR 160 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~-~~v~~~~~Dvs~~-~~v~~~~~~~~~ 160 (350)
.+++|++|||||++|||+++|++|+++|+ +|++++|+.++.++..+++...+ .++.++.||++|+ ++++++++.+.+
T Consensus 9 ~~~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~ 87 (311)
T 3o26_A 9 VTKRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKT 87 (311)
T ss_dssp ---CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cCCCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHH
Confidence 46889999999999999999999999995 99999999988888888876543 5799999999998 999999999999
Q ss_pred cCCCCcEEEEccccCCC-----------------------------CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 018819 161 SGRPLDVLVCNAAVYLP-----------------------------TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDL 211 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~-----------------------------~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~ 211 (350)
.++++|+||||||+... ...+.+.+.++|++++++|+.|+++++++++|.|
T Consensus 88 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l 167 (311)
T 3o26_A 88 HFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLL 167 (311)
T ss_dssp HHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred hCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhHhh
Confidence 99999999999998632 1134567899999999999999999999999999
Q ss_pred hcCCCCCCeEEEEeccCCCCCCCCCCCC-------CCCCcccccccccc-CCCCCCCcccCCCCCCchhchhhhHHHHHH
Q 018819 212 KQSDYPSKRLIIVGSITGNTNTLAGNVP-------PKANLGDLRGFAGG-LNGLNSSSMIDGGDFDGAKAYKDSKVCNML 283 (350)
Q Consensus 212 ~~~~~~~g~iV~vSS~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~ 283 (350)
.+++ .|+||++||.++..+....... ........+..... ...............++...|++||++++.
T Consensus 168 ~~~~--~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~ 245 (311)
T 3o26_A 168 QLSD--SPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKACLNA 245 (311)
T ss_dssp TTSS--SCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTTCCSSCHHHHHHHHHHHH
T ss_pred ccCC--CCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccccccccCcccchhhHHHHHHHHH
Confidence 8765 5799999999887542100000 00000000000000 000000000011112456789999999999
Q ss_pred HHHHHHHhhcCCCCcEEEEeeCCcccCCccc
Q 018819 284 TMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (350)
Q Consensus 284 ~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~ 314 (350)
+++.++.++. +|+||+|+||+|+|++..
T Consensus 246 ~~~~la~e~~---~i~v~~v~PG~v~T~~~~ 273 (311)
T 3o26_A 246 YTRVLANKIP---KFQVNCVCPGLVKTEMNY 273 (311)
T ss_dssp HHHHHHHHCT---TSEEEEECCCSBCSGGGT
T ss_pred HHHHHHhhcC---CceEEEecCCceecCCcC
Confidence 9999999982 599999999999998753
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-35 Score=262.72 Aligned_cols=223 Identities=22% Similarity=0.223 Sum_probs=178.7
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+.+++|++|||||++|||++++++|+++|+ +|++++|+.+..++..+++ +.++.++.+|++|+++++++++++.+.
T Consensus 8 ~~~~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (265)
T 2o23_A 8 RSVKGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKL---GNNCVFAPADVTSEKDVQTALALAKGK 83 (265)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHH---CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCcHhHHHHHHHh---CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999995 8999999987777766666 457899999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCC------CCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCC----CCCeEEEEeccCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEP------TFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY----PSKRLIIVGSITGNT 231 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~------~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~----~~g~iV~vSS~~~~~ 231 (350)
++++|+||||||+... ..+. +.+.++|++.+++|+.+++++++++.|.|.++.. +.++||++||..+..
T Consensus 84 ~g~id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~ 162 (265)
T 2o23_A 84 FGRVDVAVNCAGIAVA-SKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFE 162 (265)
T ss_dssp HSCCCEEEECCCCCCC-CCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH
T ss_pred CCCCCEEEECCccCCC-CccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCChhhcC
Confidence 9999999999998654 3322 3689999999999999999999999999987610 147999999988764
Q ss_pred CCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCC
Q 018819 232 NTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (350)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~ 311 (350)
+ .++...|++||++++.+++.++.|+ .+.||++++|+||+|+|+
T Consensus 163 ~-----------------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~ 206 (265)
T 2o23_A 163 G-----------------------------------QVGQAAYSASKGGIVGMTLPIARDL-APIGIRVMTIAPGLFGTP 206 (265)
T ss_dssp C-----------------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCCC
T ss_pred C-----------------------------------CCCCchhHHHHHHHHHHHHHHHHHH-hhcCcEEEEEEeccccCc
Confidence 3 2567899999999999999999999 567999999999999998
Q ss_pred cccccchhhHHhhhhhhHHh-hh-cCccchhhhhhhcccc
Q 018819 312 GLFREHIPLFRLLFPPFQKY-IT-KGYVSEDEAGKRLAQV 349 (350)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~-~~-~~~~s~~~~a~~i~~~ 349 (350)
+........ ...+... .. .++.+|+|+|+.++++
T Consensus 207 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~dva~~~~~l 242 (265)
T 2o23_A 207 LLTSLPEKV----CNFLASQVPFPSRLGDPAEYAHLVQAI 242 (265)
T ss_dssp --------------CHHHHTCSSSCSCBCHHHHHHHHHHH
T ss_pred cccccCHHH----HHHHHHcCCCcCCCCCHHHHHHHHHHH
Confidence 753211000 0111111 12 4567999999988753
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-35 Score=266.07 Aligned_cols=229 Identities=15% Similarity=0.174 Sum_probs=181.6
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccC-CCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~-~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
..+++|++|||||+||||+++|++|+++|+ +|++++|+.+..++..+++... +.++.++.||++|.++++++++++.+
T Consensus 22 ~~l~~k~vlITGasggiG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 100 (302)
T 1w6u_A 22 NSFQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIK 100 (302)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999999995 8999999988877777666543 56799999999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
.++++|+||||||+... .++.+.+.++|++.+++|+.+++++++++++.|.++.. .++||++||..+..+
T Consensus 101 ~~g~id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~-~~~iv~isS~~~~~~-------- 170 (302)
T 1w6u_A 101 VAGHPNIVINNAAGNFI-SPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQK-GAAFLSITTIYAETG-------- 170 (302)
T ss_dssp HTCSCSEEEECCCCCCC-SCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CEEEEEECCTHHHHC--------
T ss_pred HcCCCCEEEECCCCCCC-CccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC-CCEEEEEcccccccC--------
Confidence 99999999999998643 56677899999999999999999999999999973321 479999999877643
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~ 320 (350)
.++...|++||++++.+++.++.++ .+.||++++|+||+|.|+++.....+.
T Consensus 171 ---------------------------~~~~~~Y~~sK~a~~~~~~~la~~~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~ 222 (302)
T 1w6u_A 171 ---------------------------SGFVVPSASAKAGVEAMSKSLAAEW-GKYGMRFNVIQPGPIKTKGAFSRLDPT 222 (302)
T ss_dssp ---------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCC------CCTT
T ss_pred ---------------------------CCCcchhHHHHHHHHHHHHHHHHHh-hhcCcEEEEEeeccCCCcchhhhcccc
Confidence 2567899999999999999999998 567999999999999998543322111
Q ss_pred HHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 ~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
...............+.+|+|+|+.++++
T Consensus 223 ~~~~~~~~~~~p~~~~~~~~dva~~~~~l 251 (302)
T 1w6u_A 223 GTFEKEMIGRIPCGRLGTVEELANLAAFL 251 (302)
T ss_dssp SHHHHHHHTTCTTSSCBCHHHHHHHHHHH
T ss_pred hhhHHHHHhcCCcCCCCCHHHHHHHHHHH
Confidence 00000001111224567899999887653
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=265.42 Aligned_cols=222 Identities=11% Similarity=0.089 Sum_probs=176.6
Q ss_pred ccCCCEEEEEcC--CCchHHHHHHHHHHcCCcEEEEEecChhH-HHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHH
Q 018819 83 TLRKGSVIITGA--SSGLGLATAKALAETGKWHIIMACRDFLK-AERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 83 ~l~~~~~lItGg--s~gIG~~ia~~la~~Ga~~Vi~~~r~~~~-~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
.+++|++||||| ++|||+++|++|+++|+ +|++++|+.++ .++..+++ +.++.++.||++|+++++++++++.
T Consensus 4 ~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~ 79 (269)
T 2h7i_A 4 LLDGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRLRLIQRITDRL---PAKAPLLELDVQNEEHLASLAGRVT 79 (269)
T ss_dssp TTTTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEECSCHHHHHHHHTTS---SSCCCEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCchHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHhc---CCCceEEEccCCCHHHHHHHHHHHH
Confidence 468999999999 99999999999999995 89999998755 34444333 4568899999999999999999999
Q ss_pred HcCC---CCcEEEEccccCCC----CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCC
Q 018819 160 RSGR---PLDVLVCNAAVYLP----TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTN 232 (350)
Q Consensus 160 ~~~g---~id~lv~~Ag~~~~----~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~ 232 (350)
+.+| ++|+||||||+... ..++.+.+.++|++.+++|+.|+++++++++|.|.+. |+||++||..+. +
T Consensus 80 ~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~----g~iv~iss~~~~-~ 154 (269)
T 2h7i_A 80 EAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPG----GSIVGMDFDPSR-A 154 (269)
T ss_dssp HHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEE----EEEEEEECCCSS-C
T ss_pred HHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccC----CeEEEEcCcccc-c
Confidence 9988 99999999998642 2567788999999999999999999999999998763 699999997652 1
Q ss_pred CCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 233 TLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
.+++..|++||++++.++++++.|+ .++||+||+|+||+|+|++
T Consensus 155 -----------------------------------~~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~T~~ 198 (269)
T 2h7i_A 155 -----------------------------------MPAYNWMTVAKSALESVNRFVAREA-GKYGVRSNLVAAGPIRTLA 198 (269)
T ss_dssp -----------------------------------CTTTHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEECCCCCHH
T ss_pred -----------------------------------cCchHHHHHHHHHHHHHHHHHHHHh-cccCcEEEEEecCcccchh
Confidence 3567899999999999999999999 6779999999999999986
Q ss_pred ccccc---hhh--HH---hhhhhhHH-hhhc-Cccchhhhhhhcccc
Q 018819 313 LFREH---IPL--FR---LLFPPFQK-YITK-GYVSEDEAGKRLAQV 349 (350)
Q Consensus 313 ~~~~~---~~~--~~---~~~~~~~~-~~~~-~~~s~~~~a~~i~~~ 349 (350)
..... .+- .. .....+.. .... ++.+|+|+|+.+++|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~rr~~~p~dvA~~v~~L 245 (269)
T 2h7i_A 199 MSAIVGGALGEEAGAQIQLLEEGWDQRAPIGWNMKDATPVAKTVCAL 245 (269)
T ss_dssp HHHHHTTTTCHHHHHHHHHHHHHHHHHCTTCCCTTCCHHHHHHHHHH
T ss_pred hhccccccchhhHHHHHHHHHHhhhccCCcccCCCCHHHHHHHHHHH
Confidence 42210 000 00 00011111 1223 478999999988764
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=257.99 Aligned_cols=223 Identities=18% Similarity=0.208 Sum_probs=180.4
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCce-EEEEccCCCHHHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENY-TIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v-~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
+++++|++|||||+||||++++++|+++|+ +|++++|+.++.++..+++ +.++ .++.+|++|.++++++++++.+
T Consensus 7 ~~~~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (254)
T 2wsb_A 7 FRLDGACAAVTGAGSGIGLEICRAFAASGA-RLILIDREAAALDRAAQEL---GAAVAARIVADVTDAEAMTAAAAEAEA 82 (254)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---GGGEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---cccceeEEEEecCCHHHHHHHHHHHHh
Confidence 467899999999999999999999999995 8999999988777776666 3456 8899999999999999999988
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
++++|+||||||+... .++.+.+.++|++.+++|+.|+++++++++|.|.+++ .++||++||..+..+.
T Consensus 83 -~~~id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~~~------- 151 (254)
T 2wsb_A 83 -VAPVSILVNSAGIARL-HDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARG--AGAIVNLGSMSGTIVN------- 151 (254)
T ss_dssp -HSCCCEEEECCCCCCC-BCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTSCC-------
T ss_pred -hCCCcEEEECCccCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEEecchhccCC-------
Confidence 8899999999998654 5677889999999999999999999999999998765 4799999999876431
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCch--hchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGA--KAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~ 318 (350)
++. ..|++||++++.+++.++.++ .+.||++++|+||++.|++......
T Consensus 152 ----------------------------~~~~~~~Y~~sK~a~~~~~~~~~~~~-~~~gi~v~~v~Pg~v~t~~~~~~~~ 202 (254)
T 2wsb_A 152 ----------------------------RPQFASSYMASKGAVHQLTRALAAEW-AGRGVRVNALAPGYVATEMTLKMRE 202 (254)
T ss_dssp ----------------------------SSSCBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCSHHHHHHHT
T ss_pred ----------------------------CCCcchHHHHHHHHHHHHHHHHHHHH-hhcCeEEEEEEecccCchhhhcccc
Confidence 233 789999999999999999999 5679999999999999986432100
Q ss_pred hhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
................+.+|+|+|+.++++
T Consensus 203 -~~~~~~~~~~~~~~~~~~~~~dva~~~~~l 232 (254)
T 2wsb_A 203 -RPELFETWLDMTPMGRCGEPSEIAAAALFL 232 (254)
T ss_dssp -CHHHHHHHHHTSTTSSCBCHHHHHHHHHHH
T ss_pred -ChHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 000000011111224578999999987653
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-35 Score=261.58 Aligned_cols=222 Identities=21% Similarity=0.236 Sum_probs=165.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEE-ecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMA-CRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~-~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
.+++|++|||||++|||++++++|+++|+ +|+++ .|+.+..++..+++...+.++.++.+|++|+++++++++++.+.
T Consensus 2 ~l~~~~vlItGasggiG~~~a~~l~~~G~-~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (247)
T 2hq1_A 2 QLKGKTAIVTGSSRGLGKAIAWKLGNMGA-NIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDA 80 (247)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence 46789999999999999999999999995 78877 67777777776666655678999999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|+||||||.... .++.+.+.++|++.+++|+.++++++++++|.|.+++ .++||++||..+..+
T Consensus 81 ~~~~d~vi~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~~--------- 148 (247)
T 2hq1_A 81 FGRIDILVNNAGITRD-TLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQK--SGKIINITSIAGIIG--------- 148 (247)
T ss_dssp HSCCCEEEECC----------------CHHHHHHTHHHHHHHHHHHHHHHHHHT--CEEEEEECC---------------
T ss_pred cCCCCEEEECCCCCCC-CccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEcChhhccC---------
Confidence 9999999999998643 5666788899999999999999999999999997654 479999999987653
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.++...|++||++++.+++.++.|+ .+.||++++|+||+++|++... ..+.
T Consensus 149 --------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~-~~~~- 199 (247)
T 2hq1_A 149 --------------------------NAGQANYAASKAGLIGFTKSIAKEF-AAKGIYCNAVAPGIIKTDMTDV-LPDK- 199 (247)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHT-SCHH-
T ss_pred --------------------------CCCCcHhHHHHHHHHHHHHHHHHHH-HHcCcEEEEEEEEEEeccchhh-cchH-
Confidence 2567899999999999999999999 5679999999999999986422 1110
Q ss_pred HhhhhhhH-HhhhcCccchhhhhhhccc
Q 018819 322 RLLFPPFQ-KYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 322 ~~~~~~~~-~~~~~~~~s~~~~a~~i~~ 348 (350)
. ...+. ......+.+|+|+|+.+++
T Consensus 200 -~-~~~~~~~~~~~~~~~~~dva~~~~~ 225 (247)
T 2hq1_A 200 -V-KEMYLNNIPLKRFGTPEEVANVVGF 225 (247)
T ss_dssp -H-HHHHHTTSTTSSCBCHHHHHHHHHH
T ss_pred -H-HHHHHhhCCCCCCCCHHHHHHHHHH
Confidence 0 00111 1122456799999988764
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-35 Score=257.68 Aligned_cols=215 Identities=23% Similarity=0.258 Sum_probs=173.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
+|++|||||++|||++++++|+++|+ +|++++|+.++ ..+++ + +.++.+|++| ++++++++++.+.++++
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~G~-~V~~~~r~~~~---~~~~~---~--~~~~~~D~~~-~~~~~~~~~~~~~~g~i 71 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARGY-RVAIASRNPEE---AAQSL---G--AVPLPTDLEK-DDPKGLVKRALEALGGL 71 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHH---HHHHH---T--CEEEECCTTT-SCHHHHHHHHHHHHTSC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHH---HHHhh---C--cEEEecCCch-HHHHHHHHHHHHHcCCC
Confidence 57999999999999999999999995 89999998765 22333 2 6788999999 99999999999888999
Q ss_pred cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcc
Q 018819 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (350)
|+||||||+... .++.+.+.++|++++++|+.++++++++++|.|.+++ .|+||++||..+..+.
T Consensus 72 d~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~~~------------ 136 (239)
T 2ekp_A 72 HVLVHAAAVNVR-KPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAG--WGRVLFIGSVTTFTAG------------ 136 (239)
T ss_dssp CEEEECCCCCCC-CCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTSCC------------
T ss_pred CEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEECchhhccCC------------
Confidence 999999998643 6777899999999999999999999999999998764 4799999999876431
Q ss_pred ccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccc-hhhHHhh
Q 018819 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH-IPLFRLL 324 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~-~~~~~~~ 324 (350)
..++...|++||++++.+++.++.|+ .+.||++|+|+||+|+|++..... .+ ...
T Consensus 137 ---------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~--~~~ 192 (239)
T 2ekp_A 137 ---------------------GPVPIPAYTTAKTALLGLTRALAKEW-ARLGIRVNLLCPGYVETEFTLPLRQNP--ELY 192 (239)
T ss_dssp ---------------------TTSCCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSGGGHHHHTCH--HHH
T ss_pred ---------------------CCCCCccHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEEeCCccCchhhccccCH--HHH
Confidence 01467899999999999999999999 667999999999999998643210 01 000
Q ss_pred hhhhHHhhhcCccchhhhhhhcccc
Q 018819 325 FPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 325 ~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..........++.+|+|+|+.++++
T Consensus 193 ~~~~~~~p~~~~~~~~dvA~~~~~l 217 (239)
T 2ekp_A 193 EPITARIPMGRWARPEEIARVAAVL 217 (239)
T ss_dssp HHHHTTCTTSSCBCHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 0001111234578999999988754
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=258.15 Aligned_cols=224 Identities=18% Similarity=0.187 Sum_probs=183.8
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+.+++|++|||||+||||++++++|+++|+ +|++++|+.+..++..+++...+.++.++.||++|+++++++++++.+.
T Consensus 7 ~~~~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 85 (255)
T 1fmc_A 7 LRLDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISK 85 (255)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 457899999999999999999999999995 8999999988877777777666678899999999999999999999998
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|+||||||.... .++ +.+.++|++.+++|+.++++++++++|.|.+.+ .++||++||..+..+
T Consensus 86 ~~~~d~vi~~Ag~~~~-~~~-~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~~--------- 152 (255)
T 1fmc_A 86 LGKVDILVNNAGGGGP-KPF-DMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG--GGVILTITSMAAENK--------- 152 (255)
T ss_dssp HSSCCEEEECCCCCCC-CCT-TCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTCC---------
T ss_pred cCCCCEEEECCCCCCC-CCC-CCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEcchhhcCC---------
Confidence 8999999999998654 445 678999999999999999999999999997654 479999999887642
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.++...|++||++++.+++.++.++ .+.||++++|+||++.|++......+..
T Consensus 153 --------------------------~~~~~~Y~~sK~a~~~~~~~~~~~~-~~~~i~v~~v~Pg~v~t~~~~~~~~~~~ 205 (255)
T 1fmc_A 153 --------------------------NINMTSYASSKAAASHLVRNMAFDL-GEKNIRVNGIAPGAILTDALKSVITPEI 205 (255)
T ss_dssp --------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-HTTTEEEEEEEECSBCSHHHHTTCCHHH
T ss_pred --------------------------CCCCcccHHHHHHHHHHHHHHHHHh-hhcCcEEEEEecccCcchhhhhccChHH
Confidence 2567899999999999999999998 5679999999999999986532111110
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhccc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
............+.+|+|+|+.+++
T Consensus 206 --~~~~~~~~~~~~~~~~~dva~~~~~ 230 (255)
T 1fmc_A 206 --EQKMLQHTPIRRLGQPQDIANAALF 230 (255)
T ss_dssp --HHHHHHTCSSCSCBCHHHHHHHHHH
T ss_pred --HHHHHhcCCcccCCCHHHHHHHHHH
Confidence 0001111122456789999988765
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-35 Score=259.33 Aligned_cols=221 Identities=18% Similarity=0.166 Sum_probs=180.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEE-EecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIM-ACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~-~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+|++|||||++|||++++++|+++|+ +|++ .+|+.+..++..+++...+.++.++.+|++|+++++++++++.+.+++
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 79 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGT 79 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 57999999999999999999999995 7777 589887777776666555668899999999999999999999999999
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
+|+||||||+... .++.+.+.++|++.+++|+.+++++++++.|.|.+++ .++||++||..+..+
T Consensus 80 id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~~------------ 144 (244)
T 1edo_A 80 IDVVVNNAGITRD-TLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKR--KGRIINIASVVGLIG------------ 144 (244)
T ss_dssp CSEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCTHHHHC------------
T ss_pred CCEEEECCCCCCC-cCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcC--CCEEEEECChhhcCC------------
Confidence 9999999998654 5667789999999999999999999999999997654 479999999877643
Q ss_pred cccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhh
Q 018819 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLL 324 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~ 324 (350)
.++...|++||++++.+++.++.++ .+.||++++|+||+++|++...........
T Consensus 145 -----------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~- 199 (244)
T 1edo_A 145 -----------------------NIGQANYAAAKAGVIGFSKTAAREG-ASRNINVNVVCPGFIASDMTAKLGEDMEKK- 199 (244)
T ss_dssp -----------------------CTTCHHHHHHHHHHHHHHHHHHHHH-HTTTEEEEEEEECSBCSHHHHTTCHHHHHH-
T ss_pred -----------------------CCCCccchhhHHHHHHHHHHHHHHh-hhcCCEEEEEeeCccccchhhhcChHHHHH-
Confidence 2567899999999999999999998 567999999999999998643211111000
Q ss_pred hhhhHHhhhcCccchhhhhhhcccc
Q 018819 325 FPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 325 ~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
........++.+|+|+|+.++++
T Consensus 200 --~~~~~~~~~~~~~~dva~~~~~l 222 (244)
T 1edo_A 200 --ILGTIPLGRTGQPENVAGLVEFL 222 (244)
T ss_dssp --HHTSCTTCSCBCHHHHHHHHHHH
T ss_pred --HhhcCCCCCCCCHHHHHHHHHHH
Confidence 00011224567999999887653
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-35 Score=266.97 Aligned_cols=225 Identities=33% Similarity=0.428 Sum_probs=171.6
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
++++++|++|||||++|||+++|++|+++|+ +|++++|+.++.++..+++ +.++.++.+|++|.++++++++++
T Consensus 11 ~~~l~gk~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~v~~~~~~~-- 84 (291)
T 3rd5_A 11 LPSFAQRTVVITGANSGLGAVTARELARRGA-TVIMAVRDTRKGEAAARTM---AGQVEVRELDLQDLSSVRRFADGV-- 84 (291)
T ss_dssp CCCCTTCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTTS---SSEEEEEECCTTCHHHHHHHHHTC--
T ss_pred ccCCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---cCCeeEEEcCCCCHHHHHHHHHhc--
Confidence 4568999999999999999999999999995 9999999988877766655 468999999999999999988866
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
+++|+||||||+..+ ..+.+.++|++++++|+.|+++++++++|.|.+ +||++||.++..+....
T Consensus 85 --~~iD~lv~nAg~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~------riv~isS~~~~~~~~~~---- 149 (291)
T 3rd5_A 85 --SGADVLINNAGIMAV---PYALTVDGFESQIGTNHLGHFALTNLLLPRLTD------RVVTVSSMAHWPGRINL---- 149 (291)
T ss_dssp --CCEEEEEECCCCCSC---CCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEE------EEEEECCGGGTTCCCCS----
T ss_pred --CCCCEEEECCcCCCC---cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh------heeEeechhhccCCCCc----
Confidence 689999999998643 346788999999999999999999999999865 89999999887542100
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCC--cEEEEeeCCcccCCcccccch
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETG--IAFASLYPGCIATTGLFREHI 318 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~g--i~v~~v~PG~v~t~~~~~~~~ 318 (350)
.+ ...+..++++...|++||++++.+++.++.|+ .+.| |++|+|+||+|+|++......
T Consensus 150 ----~~--------------~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~g~~i~v~~v~PG~v~T~~~~~~~~ 210 (291)
T 3rd5_A 150 ----ED--------------LNWRSRRYSPWLAYSQSKLANLLFTSELQRRL-TAAGSPLRALAAHPGYSHTNLQGASGR 210 (291)
T ss_dssp ----SC--------------TTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHH-HHTTCCCEEEEECCSGGGSCC------
T ss_pred ----cc--------------ccccccCCCCcchHHHHHHHHHHHHHHHHHHH-hhCCCCEEEEEeeCCCCccccccccch
Confidence 00 00111345788899999999999999999999 4445 999999999999987643211
Q ss_pred hhHHhhhhhhHHhhh-cCccchhhhhhhcccc
Q 018819 319 PLFRLLFPPFQKYIT-KGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ~~~~~~~~~~~~~~~-~~~~s~~~~a~~i~~~ 349 (350)
.... .+..... ....+|+|+|+.++++
T Consensus 211 ~~~~----~~~~~~~~~~~~~~~~~A~~~~~l 238 (291)
T 3rd5_A 211 KLGD----ALMSAATRVVATDADFGARQTLYA 238 (291)
T ss_dssp ------------------CHHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 1111 1111111 2234699999887753
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=259.08 Aligned_cols=232 Identities=17% Similarity=0.219 Sum_probs=181.1
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhc-cCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG-MAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~-~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
+.+++|++|||||++|||++++++|+++|+ +|++++|+.+..++..+++. ..+.++.++.||++|+++++++++++.+
T Consensus 10 ~~~~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 88 (265)
T 1h5q_A 10 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDA 88 (265)
T ss_dssp ECCTTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999999994 99999997555444444442 2256789999999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
.++++|+||||||+... .++.+.+.++|++.+++|+.+++++++++.|.|.+++. .++||++||..+..+....
T Consensus 89 ~~~~id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~-~~~iv~~sS~~~~~~~~~~---- 162 (265)
T 1h5q_A 89 DLGPISGLIANAGVSVV-KPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQ-KGSIVVTSSMSSQIINQSS---- 162 (265)
T ss_dssp HSCSEEEEEECCCCCCC-SCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEECCGGGTSCCEEE----
T ss_pred hcCCCCEEEECCCcCCC-CchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCC-CceEEEeCCchhhcccccc----
Confidence 99999999999998654 56778899999999999999999999999999876531 3699999998876432000
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~ 320 (350)
..+..+...|++||++++.+++.++.|+ .+.||++++|+||+|+|++.... .+.
T Consensus 163 ------------------------~~~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~-~~~ 216 (265)
T 1h5q_A 163 ------------------------LNGSLTQVFYNSSKAACSNLVKGLAAEW-ASAGIRVNALSPGYVNTDQTAHM-DKK 216 (265)
T ss_dssp ------------------------TTEECSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCGGGGGS-CHH
T ss_pred ------------------------ccccccccccHHHHHHHHHHHHHHHHHH-HhcCcEEEEEecCcccccccccc-chh
Confidence 0012346789999999999999999999 56799999999999999875321 111
Q ss_pred HHhhhhhhHH-hhhcCccchhhhhhhcccc
Q 018819 321 FRLLFPPFQK-YITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 ~~~~~~~~~~-~~~~~~~s~~~~a~~i~~~ 349 (350)
. ...+.. ....++.+|+|+|+.++++
T Consensus 217 ~---~~~~~~~~~~~~~~~~~dva~~~~~l 243 (265)
T 1h5q_A 217 I---RDHQASNIPLNRFAQPEEMTGQAILL 243 (265)
T ss_dssp H---HHHHHHTCTTSSCBCGGGGHHHHHHH
T ss_pred H---HHHHHhcCcccCCCCHHHHHHHHHhh
Confidence 0 011111 1224578999999887653
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-34 Score=252.98 Aligned_cols=207 Identities=25% Similarity=0.276 Sum_probs=169.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.+|++|||||+||||++++++|+++|+ +|++++|+.+..++..+++. ++.++.+|++|.++++++++++.+.+++
T Consensus 4 ~~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (234)
T 2ehd_A 4 MKGAVLITGASRGIGEATARLLHAKGY-RVGLMARDEKRLQALAAELE----GALPLPGDVREEGDWARAVAAMEEAFGE 78 (234)
T ss_dssp CCCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHST----TCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhh----hceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 468999999999999999999999995 89999999877777666553 5788999999999999999999998899
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
+|+||||||+... .++.+.+.++|+..+++|+.+++++++.++|.|.+++ .++||++||..+..+
T Consensus 79 id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--~~~iv~isS~~~~~~------------ 143 (234)
T 2ehd_A 79 LSALVNNAGVGVM-KPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRG--GGTIVNVGSLAGKNP------------ 143 (234)
T ss_dssp CCEEEECCCCCCC-SCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT--CEEEEEECCTTTTSC------------
T ss_pred CCEEEECCCcCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CcEEEEECCchhcCC------------
Confidence 9999999998643 5677889999999999999999999999999998765 479999999987642
Q ss_pred cccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhh
Q 018819 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLL 324 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~ 324 (350)
.++...|++||++++.+++.++.++ .+.||++++|+||+|+|++.... +
T Consensus 144 -----------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~--~----- 192 (234)
T 2ehd_A 144 -----------------------FKGGAAYNASKFGLLGLAGAAMLDL-REANVRVVNVLPGSVDTGFAGNT--P----- 192 (234)
T ss_dssp -----------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEECC------------------
T ss_pred -----------------------CCCCchhhHHHHHHHHHHHHHHHHH-hhcCcEEEEEEeCCCcCCccccc--c-----
Confidence 3567899999999999999999999 56799999999999999864321 1
Q ss_pred hhhhHHhhhcCccchhhhhhhcccc
Q 018819 325 FPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 325 ~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..+ ...+|+|+|+.++++
T Consensus 193 -~~~------~~~~~~dvA~~~~~l 210 (234)
T 2ehd_A 193 -GQA------WKLKPEDVAQAVLFA 210 (234)
T ss_dssp ------------CCHHHHHHHHHHH
T ss_pred -ccc------CCCCHHHHHHHHHHH
Confidence 001 146999999887653
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=259.76 Aligned_cols=224 Identities=20% Similarity=0.222 Sum_probs=178.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCC-------CceEEEEccCCCHHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-------ENYTIMHLDLASLDSVRQFV 155 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~-------~~v~~~~~Dvs~~~~v~~~~ 155 (350)
.+++|++|||||++|||++++++|+++|+ +|++++|+.+..++..+++...+ .++.++.+|++|.+++++++
T Consensus 4 ~~~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 82 (264)
T 2pd6_A 4 RLRSALALVTGAGSGIGRAVSVRLAGEGA-TVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLL 82 (264)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHH
Confidence 46789999999999999999999999995 99999999888777777665544 57889999999999999999
Q ss_pred HHHHHcCCCC-cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCC
Q 018819 156 DTFRRSGRPL-DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTL 234 (350)
Q Consensus 156 ~~~~~~~g~i-d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~ 234 (350)
+.+.+.++++ |+||||||.... .++.+.+.++|++.+++|+.|++++++++.|.|.+++. .|+||++||..+..+
T Consensus 83 ~~~~~~~g~i~d~vi~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-~g~iv~isS~~~~~~-- 158 (264)
T 2pd6_A 83 EQVQACFSRPPSVVVSCAGITQD-EFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGC-RGSIINISSIVGKVG-- 158 (264)
T ss_dssp HHHHHHHSSCCSEEEECCCCCCC-BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEECCTHHHHC--
T ss_pred HHHHHHhCCCCeEEEECCCcCCC-cchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC-CceEEEECChhhccC--
Confidence 9999989999 999999998644 56677899999999999999999999999999876431 269999999877643
Q ss_pred CCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccc
Q 018819 235 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (350)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~ 314 (350)
.++...|++||++++.+++.++.++ .+.||++++|+||++.|++..
T Consensus 159 ---------------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~ 204 (264)
T 2pd6_A 159 ---------------------------------NVGQTNYAASKAGVIGLTQTAAREL-GRHGIRCNSVLPGFIATPMTQ 204 (264)
T ss_dssp ---------------------------------CTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSCC--
T ss_pred ---------------------------------CCCChhhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeecccccchh
Confidence 2567899999999999999999998 567999999999999998653
Q ss_pred ccchhhHHhhhhhhHHhhhcCccchhhhhhhccc
Q 018819 315 REHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
. ..+. .............+.+|+|+|+.+++
T Consensus 205 ~-~~~~--~~~~~~~~~~~~~~~~~~dva~~~~~ 235 (264)
T 2pd6_A 205 K-VPQK--VVDKITEMIPMGHLGDPEDVADVVAF 235 (264)
T ss_dssp -----------CTGGGCTTCSCBCHHHHHHHHHH
T ss_pred h-cCHH--HHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 2 1110 00000011112446789999988765
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-34 Score=261.73 Aligned_cols=226 Identities=17% Similarity=0.230 Sum_probs=181.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhcc-----CCCceEEEEccCCCHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-----AKENYTIMHLDLASLDSVRQFVDT 157 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~-----~~~~v~~~~~Dvs~~~~v~~~~~~ 157 (350)
.+++|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+++.. .+.++.++.+|++|++++++++++
T Consensus 15 ~l~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 93 (303)
T 1yxm_A 15 LLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS 93 (303)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHH
Confidence 57899999999999999999999999995 899999998887777776643 356799999999999999999999
Q ss_pred HHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCC
Q 018819 158 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237 (350)
Q Consensus 158 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~ 237 (350)
+.+.++++|+||||||+... .++.+.+.++|++.+++|+.|+++++++++|.+.++. .|+||++||.+ ..+
T Consensus 94 ~~~~~g~id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~~~iv~isS~~-~~~----- 164 (303)
T 1yxm_A 94 TLDTFGKINFLVNNGGGQFL-SPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEH--GGSIVNIIVPT-KAG----- 164 (303)
T ss_dssp HHHHHSCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHH--CEEEEEECCCC-TTC-----
T ss_pred HHHHcCCCCEEEECCCCCCC-CchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc--CCeEEEEEeec-ccC-----
Confidence 99999999999999997543 5667789999999999999999999999999654432 47999999987 432
Q ss_pred CCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccc
Q 018819 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317 (350)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~ 317 (350)
.++...|+++|+++..+++.++.++ .+.||++++|+||+|.|++.....
T Consensus 165 ------------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~ 213 (303)
T 1yxm_A 165 ------------------------------FPLAVHSGAARAGVYNLTKSLALEW-ACSGIRINCVAPGVIYSQTAVENY 213 (303)
T ss_dssp ------------------------------CTTCHHHHHHHHHHHHHHHHHHHHT-GGGTEEEEEEEECSBCCTGGGTTS
T ss_pred ------------------------------CCcchhhHHHHHHHHHHHHHHHHHh-cccCeEEEEEecCCcccchhhhhc
Confidence 3567899999999999999999999 566999999999999999532221
Q ss_pred hhh-HHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 318 IPL-FRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 318 ~~~-~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
... ..............++.+|+|+|+.++++
T Consensus 214 ~~~~~~~~~~~~~~~p~~~~~~~~dvA~~i~~l 246 (303)
T 1yxm_A 214 GSWGQSFFEGSFQKIPAKRIGVPEEVSSVVCFL 246 (303)
T ss_dssp GGGGGGGGTTGGGGSTTSSCBCTHHHHHHHHHH
T ss_pred cccchHHHHHHHhcCcccCCCCHHHHHHHHHHH
Confidence 110 00111111112234578999999988653
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-35 Score=260.45 Aligned_cols=211 Identities=15% Similarity=0.147 Sum_probs=169.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHH-cCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAE-TGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~-~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
++|++|||||++|||+++|++|++ .| .+|++.+|+.+. ....+.++.||++|+++++++++.+. ++
T Consensus 3 ~~k~vlITGas~gIG~~~a~~l~~~~g-~~v~~~~~~~~~----------~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~ 69 (244)
T 4e4y_A 3 AMANYLVTGGSKGIGKAVVELLLQNKN-HTVINIDIQQSF----------SAENLKFIKADLTKQQDITNVLDIIK--NV 69 (244)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTSTT-EEEEEEESSCCC----------CCTTEEEEECCTTCHHHHHHHHHHTT--TC
T ss_pred CCCeEEEeCCCChHHHHHHHHHHhcCC-cEEEEecccccc----------ccccceEEecCcCCHHHHHHHHHHHH--hC
Confidence 578999999999999999999999 67 589998887531 12357899999999999999996553 67
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCC
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (350)
++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.++ |+||++||..+..+
T Consensus 70 ~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~----g~iv~~sS~~~~~~----------- 133 (244)
T 4e4y_A 70 SFDGIFLNAGILIK-GSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVG----ASIVFNGSDQCFIA----------- 133 (244)
T ss_dssp CEEEEEECCCCCCC-BCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEE----EEEEEECCGGGTCC-----------
T ss_pred CCCEEEECCccCCC-CCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccC----cEEEEECCHHHccC-----------
Confidence 99999999999754 678899999999999999999999999999998763 69999999988753
Q ss_pred ccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH-
Q 018819 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR- 322 (350)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~- 322 (350)
.++...|++||++++.+++.++.|+ .++||+||+|+||+|+|++..........
T Consensus 134 ------------------------~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~ 188 (244)
T 4e4y_A 134 ------------------------KPNSFAYTLSKGAIAQMTKSLALDL-AKYQIRVNTVCPGTVDTDLYRNLIQKYANN 188 (244)
T ss_dssp ------------------------CTTBHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEESCBCCHHHHHHHHHHHHH
T ss_pred ------------------------CCCCchhHHHHHHHHHHHHHHHHHH-HHcCeEEEEEecCccCchhhHHHHHhhhhh
Confidence 3677899999999999999999999 67799999999999999865321111000
Q ss_pred -------hhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 323 -------LLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 -------~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
............++.+|+|+|+.++++
T Consensus 189 ~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l 222 (244)
T 4e4y_A 189 VGISFDEAQKQEEKEFPLNRIAQPQEIAELVIFL 222 (244)
T ss_dssp HTCCHHHHHHHHHTTSTTSSCBCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHhhcCCCCCCcCHHHHHHHHHHH
Confidence 000111112235678999999988764
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=254.32 Aligned_cols=201 Identities=16% Similarity=0.161 Sum_probs=164.1
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+.+++|++|||||++|||+++|++|+++|+ +|++++|+.+ +|++|+++++++++++
T Consensus 2 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~--------------------~D~~~~~~v~~~~~~~--- 57 (223)
T 3uce_A 2 MGSDKTVYVVLGGTSGIGAELAKQLESEHT-IVHVASRQTG--------------------LDISDEKSVYHYFETI--- 57 (223)
T ss_dssp ---CCEEEEEETTTSHHHHHHHHHHCSTTE-EEEEESGGGT--------------------CCTTCHHHHHHHHHHH---
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEecCCcc--------------------cCCCCHHHHHHHHHHh---
Confidence 457899999999999999999999999995 9999998753 8999999999998865
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
+++|+||||||+.....++.+.+.++|++.+++|+.++++++++++|.|.+ +|+||++||..+..+
T Consensus 58 -g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~----~g~iv~~sS~~~~~~--------- 123 (223)
T 3uce_A 58 -GAFDHLIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQ----GGSITLTSGMLSRKV--------- 123 (223)
T ss_dssp -CSEEEEEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEE----EEEEEEECCGGGTSC---------
T ss_pred -CCCCEEEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccC----CeEEEEecchhhccC---------
Confidence 789999999998755578889999999999999999999999999999876 369999999988753
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.++...|++||++++.+++.++.|+ .+ |+||+|+||+|+|++.........
T Consensus 124 --------------------------~~~~~~Y~asK~a~~~~~~~la~e~-~~--i~vn~v~PG~v~t~~~~~~~~~~~ 174 (223)
T 3uce_A 124 --------------------------VANTYVKAAINAAIEATTKVLAKEL-AP--IRVNAISPGLTKTEAYKGMNADDR 174 (223)
T ss_dssp --------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-TT--SEEEEEEECSBCSGGGTTSCHHHH
T ss_pred --------------------------CCCchHHHHHHHHHHHHHHHHHHhh-cC--cEEEEEEeCCCcchhhhhcchhhH
Confidence 3677899999999999999999999 33 999999999999987643221111
Q ss_pred -HhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 322 -RLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 -~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.............++.+|+|+|+.++++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~dvA~~~~~l 203 (223)
T 3uce_A 175 DAMYQRTQSHLPVGKVGEASDIAMAYLFA 203 (223)
T ss_dssp HHHHHHHHHHSTTCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHH
Confidence 1111112222345678999999987753
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=256.47 Aligned_cols=223 Identities=18% Similarity=0.210 Sum_probs=182.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhcc-CCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~-~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
++++|++|||||+||||++++++|+++|+ +|++++|+.+..++..+++.. .+.++.++.+|++|+++++++++++.+.
T Consensus 4 ~~~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (248)
T 2pnf_A 4 KLQGKVSLVTGSTRGIGRAIAEKLASAGS-TVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNL 82 (248)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence 46889999999999999999999999995 999999998777776666543 3567899999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|+||||||.... .++.+.+.++|++.+++|+.++++++++++|.|.+++ .++||++||..+..+
T Consensus 83 ~~~~d~vi~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~~--------- 150 (248)
T 2pnf_A 83 VDGIDILVNNAGITRD-KLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQR--WGRIVNISSVVGFTG--------- 150 (248)
T ss_dssp SSCCSEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHT--CEEEEEECCHHHHHC---------
T ss_pred cCCCCEEEECCCCCCC-CccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC--CcEEEEEccHHhcCC---------
Confidence 9999999999998643 5667789999999999999999999999999997654 479999999876643
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.++...|++||++++.+++.++.++ .+.||++++|+||+++|++... ..+..
T Consensus 151 --------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~~i~v~~v~Pg~v~t~~~~~-~~~~~ 202 (248)
T 2pnf_A 151 --------------------------NVGQVNYSTTKAGLIGFTKSLAKEL-APRNVLVNAVAPGFIETDMTAV-LSEEI 202 (248)
T ss_dssp --------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCGGGGG-SCHHH
T ss_pred --------------------------CCCCchHHHHHHHHHHHHHHHHHHh-cccCeEEEEEEeceecCchhhh-ccHHH
Confidence 2466799999999999999999998 5669999999999999986532 11100
Q ss_pred HhhhhhhHH-hhhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQK-YITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~~-~~~~~~~s~~~~a~~i~~~ 349 (350)
...+.. .....+.+|+++|+.++++
T Consensus 203 ---~~~~~~~~~~~~~~~~~dva~~~~~l 228 (248)
T 2pnf_A 203 ---KQKYKEQIPLGRFGSPEEVANVVLFL 228 (248)
T ss_dssp ---HHHHHHTCTTSSCBCHHHHHHHHHHH
T ss_pred ---HHHHHhcCCCCCccCHHHHHHHHHHH
Confidence 011111 1124567899999887653
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=269.61 Aligned_cols=222 Identities=13% Similarity=0.058 Sum_probs=173.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHH-cCCcEEEEEecChhHH------------HHHHHHhccCCCceEEEEccCCCHHHH
Q 018819 85 RKGSVIITGASSGLGLATAKALAE-TGKWHIIMACRDFLKA------------ERAAKSAGMAKENYTIMHLDLASLDSV 151 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~-~Ga~~Vi~~~r~~~~~------------~~~~~~l~~~~~~v~~~~~Dvs~~~~v 151 (350)
.+|++|||||++|||+++|+.|++ +|| +|++++|+.+.. +...+.+...+.++..+.||++|++++
T Consensus 46 ~gKvaLVTGas~GIG~AiA~~LA~g~GA-~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd~~~v 124 (405)
T 3zu3_A 46 GPKRVLVIGASTGYGLAARITAAFGCGA-DTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFSDEIK 124 (405)
T ss_dssp CCSEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHH
T ss_pred CCCEEEEeCcchHHHHHHHHHHHHhcCC-EEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCCCHHHH
Confidence 678999999999999999999999 997 888888764321 123334445577889999999999999
Q ss_pred HHHHHHHHHcCCCCcEEEEccccCC------------CCCCC---------------------CCCCHHHHHHHHhhhhH
Q 018819 152 RQFVDTFRRSGRPLDVLVCNAAVYL------------PTAKE---------------------PTFTAEGFELSVGTNHL 198 (350)
Q Consensus 152 ~~~~~~~~~~~g~id~lv~~Ag~~~------------~~~~~---------------------~~~~~~~~~~~~~~n~~ 198 (350)
+++++++.+.+|+||+||||||+.. ...++ .+.+.++|++++++|..
T Consensus 125 ~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~Vn~~ 204 (405)
T 3zu3_A 125 QLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVMGG 204 (405)
T ss_dssp HHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhhch
Confidence 9999999999999999999999741 12344 67899999999999999
Q ss_pred HHH-HHHHHHHHH-HhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCch--hch
Q 018819 199 GHF-LLSRLLLDD-LKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGA--KAY 274 (350)
Q Consensus 199 g~~-~l~~~~~~~-~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Y 274 (350)
+.| ++++++.+. |.+. +|+||++||+.+..+ .+.. ..|
T Consensus 205 ~~~~~~~~~~~~~~m~~~---gG~IVniSSi~~~~~-----------------------------------~p~~~~~aY 246 (405)
T 3zu3_A 205 EDWQMWIDALLDAGVLAE---GAQTTAFTYLGEKIT-----------------------------------HDIYWNGSI 246 (405)
T ss_dssp HHHHHHHHHHHHHTCEEE---EEEEEEEECCCCGGG-----------------------------------TTTTTTSHH
T ss_pred hHHHHHHHHHHHHhhhhC---CcEEEEEeCchhhCc-----------------------------------CCCccchHH
Confidence 998 788887654 4442 479999999998754 2444 899
Q ss_pred hhhHHHHHHHHHHHHHhhcCCC-CcEEEEeeCCcccCCcccccchhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 275 KDSKVCNMLTMQEFHRRFHEET-GIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 275 ~asKaa~~~~~~~la~e~~~~~-gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
++||+++.+++++++.|+ ++. |||||+|+||.|.|++... .|........+. .+.++.-++|++++.+.+|
T Consensus 247 ~AaKaal~~ltrsLA~El-a~~~GIRVNaVaPG~i~T~~s~~--ip~~p~y~~~l~-~~mkr~G~~Ed~a~~i~~L 318 (405)
T 3zu3_A 247 GAAKKDLDQKVLAIRESL-AAHGGGDARVSVLKAVVSQASSA--IPMMPLYLSLLF-KVMKEKGTHEGCIEQVYSL 318 (405)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTTTSCEEEEEECCCCCCHHHHT--STTHHHHHHHHH-HHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-CcccCeEEEEEEeCCCcCchhhc--CCCCcHHHHHHH-HHHhcCCCcHHHHHHHHHH
Confidence 999999999999999999 788 9999999999999986532 121111111111 1234567888888887664
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-35 Score=259.12 Aligned_cols=215 Identities=14% Similarity=0.155 Sum_probs=171.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEE-e--cChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMA-C--RDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~-~--r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
+|++|||||++|||+++|++|+++|+ +|+++ + |+.+..++..+++ .+ +|+.|.++++++++++.+.+
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~r~~~~~~~~~~~~--~~-------~~~~~~~~v~~~~~~~~~~~ 70 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDGY-TVVCHDASFADAAERQRFESEN--PG-------TIALAEQKPERLVDATLQHG 70 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHS--TT-------EEECCCCCGGGHHHHHGGGS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCcCCHHHHHHHHHHh--CC-------CcccCHHHHHHHHHHHHHHc
Confidence 47999999999999999999999995 89998 6 9988877776665 22 23337778889999999999
Q ss_pred CCCcEEEEccccCCCC--CCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPT--AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~--~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
+++|+||||||+.... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||..+..+
T Consensus 71 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~~~~~-------- 140 (244)
T 1zmo_A 71 EAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAG--GASVIFITSSVGKKP-------- 140 (244)
T ss_dssp SCEEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCGGGTSC--------
T ss_pred CCCCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEECChhhCCC--------
Confidence 9999999999986431 5677899999999999999999999999999998765 479999999988753
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccc--ccch
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF--REHI 318 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~--~~~~ 318 (350)
.++...|++||++++.++++++.|+ .+.||+||+|+||+|+|++.. ....
T Consensus 141 ---------------------------~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~~~~~~ 192 (244)
T 1zmo_A 141 ---------------------------LAYNPLYGPARAATVALVESAAKTL-SRDGILLYAIGPNFFNNPTYFPTSDWE 192 (244)
T ss_dssp ---------------------------CTTCTTHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESSBCBTTTBCHHHHH
T ss_pred ---------------------------CCCchHHHHHHHHHHHHHHHHHHHH-hhcCcEEEEEeeCCCcCCccccccccc
Confidence 3567899999999999999999999 667999999999999998751 1110
Q ss_pred hhHHhhhhhhH-HhhhcCccchhhhhhhcccc
Q 018819 319 PLFRLLFPPFQ-KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ~~~~~~~~~~~-~~~~~~~~s~~~~a~~i~~~ 349 (350)
. ......... .....++.+|||+|+.++++
T Consensus 193 ~-~~~~~~~~~~~~p~~r~~~pe~vA~~v~~l 223 (244)
T 1zmo_A 193 N-NPELRERVDRDVPLGRLGRPDEMGALITFL 223 (244)
T ss_dssp H-CHHHHHHHHHHCTTCSCBCHHHHHHHHHHH
T ss_pred c-hHHHHHHHhcCCCCCCCcCHHHHHHHHHHH
Confidence 0 000001111 12235678999999988754
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-35 Score=274.85 Aligned_cols=222 Identities=18% Similarity=0.088 Sum_probs=172.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHH-cCCcEEEEEecChhHHH------------HHHHHhccCCCceEEEEccCCCHHHH
Q 018819 85 RKGSVIITGASSGLGLATAKALAE-TGKWHIIMACRDFLKAE------------RAAKSAGMAKENYTIMHLDLASLDSV 151 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~-~Ga~~Vi~~~r~~~~~~------------~~~~~l~~~~~~v~~~~~Dvs~~~~v 151 (350)
.+|++|||||++|||+++|+.|++ +|| +|++++|+.+..+ ...++++..|.++..+.||++|++++
T Consensus 60 ~gKvaLVTGASsGIG~AiA~~LA~~~GA-~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvtd~~~v 138 (422)
T 3s8m_A 60 GPKKVLVIGASSGYGLASRITAAFGFGA-DTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAFSDAAR 138 (422)
T ss_dssp SCSEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCCCHHHH
Confidence 588999999999999999999999 997 8888888754321 23344555677899999999999999
Q ss_pred HHHHHHHHHcC-CCCcEEEEccccC------------CCCCCC---------------------CCCCHHHHHHHHhhhh
Q 018819 152 RQFVDTFRRSG-RPLDVLVCNAAVY------------LPTAKE---------------------PTFTAEGFELSVGTNH 197 (350)
Q Consensus 152 ~~~~~~~~~~~-g~id~lv~~Ag~~------------~~~~~~---------------------~~~~~~~~~~~~~~n~ 197 (350)
+++++++.+++ |+||+||||||+. ....++ .+.+.++|++++++|.
T Consensus 139 ~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~Vn~ 218 (422)
T 3s8m_A 139 AQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVMG 218 (422)
T ss_dssp HHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHhhc
Confidence 99999999999 9999999999972 111333 3679999999999999
Q ss_pred HHHH-HHHHHHHHH-HhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCch--hc
Q 018819 198 LGHF-LLSRLLLDD-LKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGA--KA 273 (350)
Q Consensus 198 ~g~~-~l~~~~~~~-~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 273 (350)
.+.| .+++.+.+. |.++ +|+||++||+++..+ .+.. ..
T Consensus 219 ~~~~~~~~~a~~~~~m~~~---gG~IVniSSi~g~~~-----------------------------------~p~~~~~a 260 (422)
T 3s8m_A 219 GQDWELWIDALEGAGVLAD---GARSVAFSYIGTEIT-----------------------------------WPIYWHGA 260 (422)
T ss_dssp SHHHHHHHHHHHHTTCEEE---EEEEEEEEECCCGGG-----------------------------------HHHHTSHH
T ss_pred hhHHHHHHHHHHHHHHhhC---CCEEEEEeCchhhcc-----------------------------------CCCccchH
Confidence 9998 788887664 4432 479999999998753 2445 89
Q ss_pred hhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 274 YKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 274 Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
|++||+++.+++++++.|+ .+.|||||+|+||+|+|++...- |......... ..+.++.-+||++++.+.+|
T Consensus 261 Y~ASKaAl~~lTrsLA~El-a~~GIRVNaVaPG~i~T~~~~~i--p~~~~~~~~~-~~~m~r~G~pEdva~~v~~L 332 (422)
T 3s8m_A 261 LGKAKVDLDRTAQRLNARL-AKHGGGANVAVLKSVVTQASAAI--PVMPLYISMV-YKIMKEKGLHEGTIEQLDRL 332 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEECCCCCTTGGGS--THHHHHHHHH-HHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh-CccCEEEEEEEcCCCcChhhhcC--CCChHHHHHH-HhhhcCCcChHHHHHHHHHH
Confidence 9999999999999999999 67899999999999999976331 2111101111 11234556788888777654
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=258.14 Aligned_cols=228 Identities=21% Similarity=0.250 Sum_probs=183.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC-hhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD-FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~-~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
.+++|++|||||+||||++++++|+++|+ +|++++|+ .+..++..+++...+.++.++.+|++|+++++++++++.+.
T Consensus 4 ~l~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (258)
T 3afn_B 4 DLKGKRVLITGSSQGIGLATARLFARAGA-KVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAK 82 (258)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999999995 89999998 77777777777655678999999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCC---CCCCeEEEEeccCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSD---YPSKRLIIVGSITGNTNTLAGNV 238 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~---~~~g~iV~vSS~~~~~~~~~~~~ 238 (350)
++++|+||||||......++.+.+.++|+.++++|+.++++++++++|.|.+++ ...++||++||..+...
T Consensus 83 ~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~------ 156 (258)
T 3afn_B 83 FGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTG------ 156 (258)
T ss_dssp HSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHC------
T ss_pred cCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhccC------
Confidence 999999999999733446677889999999999999999999999999986532 01269999999876531
Q ss_pred CCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch
Q 018819 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (350)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~ 318 (350)
+.++...|++||++++.+++.++.++ .+.||++++|+||++.|++.... .
T Consensus 157 ----------------------------~~~~~~~Y~~sK~a~~~~~~~~~~e~-~~~gi~v~~v~Pg~v~t~~~~~~-~ 206 (258)
T 3afn_B 157 ----------------------------GGPGAGLYGAAKAFLHNVHKNWVDFH-TKDGVRFNIVSPGTVDTAFHADK-T 206 (258)
T ss_dssp ----------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBSSGGGTTC-C
T ss_pred ----------------------------CCCCchHHHHHHHHHHHHHHHHHHhh-cccCeEEEEEeCCCccccccccc-C
Confidence 12567899999999999999999998 56799999999999999875321 1
Q ss_pred hhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
+. .............+.+|+|+|+.++++
T Consensus 207 ~~--~~~~~~~~~~~~~~~~~~dva~~~~~l 235 (258)
T 3afn_B 207 QD--VRDRISNGIPMGRFGTAEEMAPAFLFF 235 (258)
T ss_dssp HH--HHHHHHTTCTTCSCBCGGGTHHHHHHH
T ss_pred HH--HHHHHhccCCCCcCCCHHHHHHHHHHH
Confidence 10 000000111224578999999887653
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-34 Score=258.61 Aligned_cols=226 Identities=19% Similarity=0.216 Sum_probs=182.6
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEec-ChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r-~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
+.+++|++|||||+||||++++++|+++|+ +|++++| +.+..++..+++...+.++.++.+|++|+++++++++++.+
T Consensus 17 ~~~~~k~vlItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 95 (274)
T 1ja9_A 17 KPLAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVS 95 (274)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999995 8988888 77777777777766667889999999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCC-CCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN-TNTLAGNVP 239 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~-~~~~~~~~~ 239 (350)
+++++|+||||||+... .++.+.+.++|++.+++|+.+++++++++++.|.+ +++||++||..+. .+
T Consensus 96 ~~~~~d~vi~~Ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~----~~~iv~~sS~~~~~~~------- 163 (274)
T 1ja9_A 96 HFGGLDFVMSNSGMEVW-CDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRR----GGRIILTSSIAAVMTG------- 163 (274)
T ss_dssp HHSCEEEEECCCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEE----EEEEEEECCGGGTCCS-------
T ss_pred HcCCCCEEEECCCCCCC-cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh----CCEEEEEcChHhccCC-------
Confidence 99999999999998643 56677899999999999999999999999999873 2699999999876 32
Q ss_pred CCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccccc---
Q 018819 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE--- 316 (350)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~--- 316 (350)
.++...|++||++++.+++.++.++ ..+||++++|+||++.|++....
T Consensus 164 ----------------------------~~~~~~Y~~sK~a~~~~~~~~~~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~ 214 (274)
T 1ja9_A 164 ----------------------------IPNHALYAGSKAAVEGFCRAFAVDC-GAKGVTVNCIAPGGVKTDMFDENSWH 214 (274)
T ss_dssp ----------------------------CCSCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBSSHHHHHHGGG
T ss_pred ----------------------------CCCCchHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCcccccchhccccc
Confidence 2567889999999999999999999 56799999999999999865310
Q ss_pred chh-----hH-HhhhhhhH-HhhhcCccchhhhhhhcccc
Q 018819 317 HIP-----LF-RLLFPPFQ-KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 317 ~~~-----~~-~~~~~~~~-~~~~~~~~s~~~~a~~i~~~ 349 (350)
..+ .. ......+. ......+.+|+|+|+.++++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~i~~l 254 (274)
T 1ja9_A 215 YAPGGYKGMPQEKIDEGLANMNPLKRIGYPADIGRAVSAL 254 (274)
T ss_dssp TSTTCCTTCCHHHHHHHHHHTSTTSSCBCHHHHHHHHHHH
T ss_pred ccccccccCchHHHHHHHHhcCCCCCccCHHHHHHHHHHH
Confidence 000 00 00000111 11224577999999987653
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=256.74 Aligned_cols=215 Identities=20% Similarity=0.231 Sum_probs=177.6
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCC-CceEEEEccCCCHHHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~-~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
..+++|++|||||+||||++++++|+++|+ +|++++|+.+..++..+++...+ .++.++.||++|.++++++++++.+
T Consensus 24 ~~~~~k~vlITGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 102 (286)
T 1xu9_A 24 EMLQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGK 102 (286)
T ss_dssp GGGTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred hhcCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999999999995 89999999888877776665444 3788999999999999999999999
Q ss_pred cCCCCcEEEEc-cccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCN-AAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (350)
Q Consensus 161 ~~g~id~lv~~-Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (350)
.++++|+|||| ||.. . ..+.+.+.++|++++++|+.|+++++++++|.|.+. .|+||++||.++..+
T Consensus 103 ~~g~iD~li~naag~~-~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~---~g~iv~isS~~~~~~------- 170 (286)
T 1xu9_A 103 LMGGLDMLILNHITNT-S-LNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS---NGSIVVVSSLAGKVA------- 170 (286)
T ss_dssp HHTSCSEEEECCCCCC-C-CCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH---TCEEEEEEEGGGTSC-------
T ss_pred HcCCCCEEEECCccCC-C-CccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHC---CCEEEEECCcccccC-------
Confidence 89999999999 5664 3 344567899999999999999999999999998764 379999999988643
Q ss_pred CCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhc-CCCCcEEEEeeCCcccCCcccccch
Q 018819 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFH-EETGIAFASLYPGCIATTGLFREHI 318 (350)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~-~~~gi~v~~v~PG~v~t~~~~~~~~ 318 (350)
.++...|++||++++.++++++.|+. ...||++++|+||+|+|++......
T Consensus 171 ----------------------------~~~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~ 222 (286)
T 1xu9_A 171 ----------------------------YPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVS 222 (286)
T ss_dssp ----------------------------CTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHHHHHHSC
T ss_pred ----------------------------CCCccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeecCccCChhHHHhcc
Confidence 35678999999999999999999983 3569999999999999986422100
Q ss_pred hhHHhhhhhhHHhhhcCccchhhhhhhccc
Q 018819 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
. .......+|+++|+.+++
T Consensus 223 ~-----------~~~~~~~~~~~vA~~i~~ 241 (286)
T 1xu9_A 223 G-----------IVHMQAAPKEECALEIIK 241 (286)
T ss_dssp G-----------GGGGGCBCHHHHHHHHHH
T ss_pred c-----------cccCCCCCHHHHHHHHHH
Confidence 0 011235788998887764
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-34 Score=253.87 Aligned_cols=221 Identities=21% Similarity=0.216 Sum_probs=179.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEE-ecChhHHHHHHHHhccCCCceEE-EEccCCCHHHHHHHHHHHHHcCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMA-CRDFLKAERAAKSAGMAKENYTI-MHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~-~r~~~~~~~~~~~l~~~~~~v~~-~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
+|++|||||++|||++++++|+++|+ +|+++ +|+.+..++..+++...+.++.. +.+|++|.++++++++++.+.++
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDGF-ALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLG 79 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcC
Confidence 46899999999999999999999995 78777 89888777777776655666777 89999999999999999999899
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCC
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (350)
++|+||||||+... .++.+.+.++|++.+++|+.|++++++.++|.|.+++ .++||++||..+..+
T Consensus 80 ~~d~li~~Ag~~~~-~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~~----------- 145 (245)
T 2ph3_A 80 GLDTLVNNAGITRD-TLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKAR--FGRIVNITSVVGILG----------- 145 (245)
T ss_dssp CCCEEEECCCCCCC-BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCTHHHHC-----------
T ss_pred CCCEEEECCCCCCC-CCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcC--CCEEEEEeChhhccC-----------
Confidence 99999999998643 5667889999999999999999999999999998754 479999999877643
Q ss_pred ccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHh
Q 018819 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL 323 (350)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~ 323 (350)
.++...|++||++++.+++.++.|+ .+.||++++|+||+++|++... ..+. .
T Consensus 146 ------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~-~~~~--~ 197 (245)
T 2ph3_A 146 ------------------------NPGQANYVASKAGLIGFTRAVAKEY-AQRGITVNAVAPGFIETEMTER-LPQE--V 197 (245)
T ss_dssp ------------------------CSSBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHT-SCHH--H
T ss_pred ------------------------CCCCcchHHHHHHHHHHHHHHHHHH-HHcCeEEEEEEEEeecCcchhh-cCHH--H
Confidence 2467899999999999999999999 5669999999999999986532 1110 0
Q ss_pred hhhhhHHhhhcCccchhhhhhhcccc
Q 018819 324 LFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 324 ~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
............+.+|+|+|+.++++
T Consensus 198 ~~~~~~~~~~~~~~~~~dva~~~~~l 223 (245)
T 2ph3_A 198 KEAYLKQIPAGRFGRPEEVAEAVAFL 223 (245)
T ss_dssp HHHHHHTCTTCSCBCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 00001111224567999999887653
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=287.28 Aligned_cols=211 Identities=20% Similarity=0.205 Sum_probs=171.3
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+.+++|++|||||++|||+++|+.|+++|+ +|++.++.. .++..+++...+.++..+.+|++ ++.+++++++.++
T Consensus 318 ~~l~gkvalVTGas~GIG~a~A~~la~~Ga-~Vv~~~~~~--~~~~~~~i~~~g~~~~~~~~Dv~--~~~~~~~~~~~~~ 392 (604)
T 2et6_A 318 VSLKDKVVLITGAGAGLGKEYAKWFAKYGA-KVVVNDFKD--ATKTVDEIKAAGGEAWPDQHDVA--KDSEAIIKNVIDK 392 (604)
T ss_dssp CCCTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEECSSC--CHHHHHHHHHTTCEEEEECCCHH--HHHHHHHHHHHHH
T ss_pred cccCCCeEEEECcchHHHHHHHHHHHHCCC-EEEEEeCcc--HHHHHHHHHhcCCeEEEEEcChH--HHHHHHHHHHHHh
Confidence 367899999999999999999999999996 888888642 23444555445667778888884 4567888888888
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
+|+||+||||||+... .++.+++.++|++++++|+.|+++++++++|+|++++ .|+||++||.++..+
T Consensus 393 ~G~iDiLVnNAGi~~~-~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~--~G~IVnisS~ag~~~--------- 460 (604)
T 2et6_A 393 YGTIDILVNNAGILRD-RSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQ--FGRIINITSTSGIYG--------- 460 (604)
T ss_dssp HSCCCEEEECCCCCCC-BCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCHHHHSC---------
T ss_pred cCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEECChhhccC---------
Confidence 9999999999999754 6788999999999999999999999999999998765 589999999988754
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.+++..|++||+|+.+|+++++.|+ .++||+||+|+||. +|+|.... .+
T Consensus 461 --------------------------~~~~~~Y~asKaal~~lt~~la~El-~~~gIrVn~v~PG~-~T~m~~~~-~~-- 509 (604)
T 2et6_A 461 --------------------------NFGQANYSSSKAGILGLSKTMAIEG-AKNNIKVNIVAPHA-ETAMTLSI-MR-- 509 (604)
T ss_dssp --------------------------CTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECC-CCCC---------
T ss_pred --------------------------CCCChhHHHHHHHHHHHHHHHHHHh-CccCeEEEEEcCCC-CCcccccc-Cc--
Confidence 3578899999999999999999999 67799999999995 89864321 01
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.. .....+|+++|+.+++|
T Consensus 510 ----~~-----~~~~~~pe~vA~~v~~L 528 (604)
T 2et6_A 510 ----EQ-----DKNLYHADQVAPLLVYL 528 (604)
T ss_dssp ------------CCSSCGGGTHHHHHHT
T ss_pred ----hh-----hccCCCHHHHHHHHHHH
Confidence 00 01245889988887764
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=258.72 Aligned_cols=214 Identities=15% Similarity=0.183 Sum_probs=169.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
|++|||||++|||+++|++|+++|+ +|++++|+.+..++..+ +...+.++..+ |.++++++++++.+.++++|
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~-l~~~~~~~~~~-----d~~~v~~~~~~~~~~~g~iD 74 (254)
T 1zmt_A 2 STAIVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDELEA-FAETYPQLKPM-----SEQEPAELIEAVTSAYGQVD 74 (254)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHH-HHHHCTTSEEC-----CCCSHHHHHHHHHHHHSCCC
T ss_pred eEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH-HHhcCCcEEEE-----CHHHHHHHHHHHHHHhCCCC
Confidence 5899999999999999999999995 89999998877666554 54334455444 66678888899888889999
Q ss_pred EEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccc
Q 018819 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (350)
Q Consensus 167 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (350)
+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||..+..+
T Consensus 75 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~~-------------- 138 (254)
T 1zmt_A 75 VLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK--SGHIIFITSATPFGP-------------- 138 (254)
T ss_dssp EEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCSTTTSC--------------
T ss_pred EEEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEECCcccccC--------------
Confidence 9999999862346777889999999999999999999999999998765 479999999988753
Q ss_pred cccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcc---------cCCcccccc
Q 018819 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI---------ATTGLFREH 317 (350)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v---------~t~~~~~~~ 317 (350)
.++...|++||++++.+++.++.|+ .+.||+||+|+||+| +|++...
T Consensus 139 ---------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~~~~~~~~~~T~~~~~-- 194 (254)
T 1zmt_A 139 ---------------------WKELSTYTSARAGACTLANALSKEL-GEYNIPVFAIGPNYLHSEDSPYFYPTEPWKT-- 194 (254)
T ss_dssp ---------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCCEEEEEESSBCCBTCCSSCBHHHHTT--
T ss_pred ---------------------CCCchHHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEecCccccccccccCCCccccc--
Confidence 3567899999999999999999999 667999999999999 6654321
Q ss_pred hhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 318 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.+ .............++.+|+|+|+.++++
T Consensus 195 ~~--~~~~~~~~~~p~~~~~~p~dvA~~v~~l 224 (254)
T 1zmt_A 195 NP--EHVAHVKKVTALQRLGTQKELGELVAFL 224 (254)
T ss_dssp CH--HHHHHHHHHSSSSSCBCHHHHHHHHHHH
T ss_pred Ch--HHHHHHhccCCCCCCcCHHHHHHHHHHH
Confidence 01 0000011111234578999999988754
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=288.24 Aligned_cols=211 Identities=16% Similarity=0.181 Sum_probs=172.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh---------hHHHHHHHHhccCCCceEEEEccCCCHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF---------LKAERAAKSAGMAKENYTIMHLDLASLDSVRQ 153 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~---------~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~ 153 (350)
.+++|++|||||++|||+++|+.|+++|+ +|++.+|+. +.+++..+++...+.++ .+|++|.+++++
T Consensus 5 ~l~gkvalVTGas~GIG~a~A~~la~~Ga-~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~---~~d~~d~~~~~~ 80 (604)
T 2et6_A 5 DFKDKVVIITGAGGGLGKYYSLEFAKLGA-KVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVA---VADYNNVLDGDK 80 (604)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECC-----------CHHHHHHHHHHHTTCEE---EEECCCTTCHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHcCC-EEEEEeCCccccccccchHHHHHHHHHHHhcCCeE---EEEcCCHHHHHH
Confidence 57899999999999999999999999996 888887754 55666666665545443 368888888999
Q ss_pred HHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCC
Q 018819 154 FVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNT 233 (350)
Q Consensus 154 ~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~ 233 (350)
+++++.+.+|+||+||||||+... .++.+++.++|++++++|+.|+++++|+++|+|++++ .|+||++||.++..+
T Consensus 81 ~v~~~~~~~G~iDiLVnNAGi~~~-~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~--~G~IVnisS~ag~~~- 156 (604)
T 2et6_A 81 IVETAVKNFGTVHVIINNAGILRD-ASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQK--YGRIVNTSSPAGLYG- 156 (604)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCC-BCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHHHC-
T ss_pred HHHHHHHHcCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEECCHHHcCC-
Confidence 999999999999999999998754 6788999999999999999999999999999998765 589999999998754
Q ss_pred CCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 234 LAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.+++..|++||+|+.+|+++++.|+ .++||+||+|+|| +.|+|.
T Consensus 157 ----------------------------------~~~~~~Y~asKaal~~lt~~la~El-~~~gIrVn~v~Pg-~~T~m~ 200 (604)
T 2et6_A 157 ----------------------------------NFGQANYASAKSALLGFAETLAKEG-AKYNIKANAIAPL-ARSRMT 200 (604)
T ss_dssp ----------------------------------CTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEEC-CCCHHH
T ss_pred ----------------------------------CCCchHHHHHHHHHHHHHHHHHHHh-CccCeEEEEEccC-CcCccc
Confidence 2578899999999999999999999 6779999999998 688753
Q ss_pred cccchhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 314 FREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
... .+ +.. ....+||++|..+++|
T Consensus 201 ~~~-~~------~~~-----~~~~~pe~vA~~v~~L 224 (604)
T 2et6_A 201 ESI-MP------PPM-----LEKLGPEKVAPLVLYL 224 (604)
T ss_dssp HTT-SC------HHH-----HTTCSHHHHHHHHHHH
T ss_pred ccc-CC------hhh-----hccCCHHHHHHHHHHH
Confidence 211 01 011 1135888888877654
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-34 Score=255.99 Aligned_cols=204 Identities=12% Similarity=0.128 Sum_probs=168.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
...+|++|||||++|||+++|++|+++|+ +|++++|+.++.+ -..+.+|++|.++++++++++.+.+
T Consensus 19 ~~m~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~------------~~~~~~d~~d~~~v~~~~~~~~~~~ 85 (251)
T 3orf_A 19 SHMSKNILVLGGSGALGAEVVKFFKSKSW-NTISIDFRENPNA------------DHSFTIKDSGEEEIKSVIEKINSKS 85 (251)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCTTS------------SEEEECSCSSHHHHHHHHHHHHTTT
T ss_pred cccCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCccccc------------ccceEEEeCCHHHHHHHHHHHHHHc
Confidence 33578999999999999999999999995 8999999865421 2357899999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|+||||||+......+.+.+.++|++.+++|+.|+++++++++|.|.+ +|+||++||..+..+
T Consensus 86 g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~----~g~iv~isS~~~~~~---------- 151 (251)
T 3orf_A 86 IKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQ----GGLFVLTGASAALNR---------- 151 (251)
T ss_dssp CCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE----EEEEEEECCGGGGSC----------
T ss_pred CCCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhcc----CCEEEEEechhhccC----------
Confidence 999999999998765444678889999999999999999999999999876 369999999988753
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhc-CCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFH-EETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~-~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.++...|++||++++.+++.++.|+. .++||+|++|+||+|+|++..... +
T Consensus 152 -------------------------~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~gi~v~~v~PG~v~t~~~~~~~-~-- 203 (251)
T 3orf_A 152 -------------------------TSGMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTPTNRKYM-S-- 203 (251)
T ss_dssp -------------------------CTTBHHHHHHHHHHHHHHHHHTSTTSSSCTTCEEEEEEESCBCCHHHHHHC-T--
T ss_pred -------------------------CCCCchhHHHHHHHHHHHHHHHHHhcccCCCcEEEEEecCcCcCcchhhhc-c--
Confidence 36778999999999999999999972 367999999999999998642110 0
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.....++.+|+|+|+.++++
T Consensus 204 --------~~~~~~~~~~~dva~~i~~l 223 (251)
T 3orf_A 204 --------DANFDDWTPLSEVAEKLFEW 223 (251)
T ss_dssp --------TSCGGGSBCHHHHHHHHHHH
T ss_pred --------cccccccCCHHHHHHHHHHH
Confidence 01123467889999887653
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-35 Score=271.63 Aligned_cols=189 Identities=11% Similarity=0.124 Sum_probs=157.0
Q ss_pred CCCEEEEEcCCC--chHHHHHHHHHHcCCcEEEEEecCh---------hHHHHHHHHhccC---CCceEEEEccCCCH--
Q 018819 85 RKGSVIITGASS--GLGLATAKALAETGKWHIIMACRDF---------LKAERAAKSAGMA---KENYTIMHLDLASL-- 148 (350)
Q Consensus 85 ~~~~~lItGgs~--gIG~~ia~~la~~Ga~~Vi~~~r~~---------~~~~~~~~~l~~~---~~~v~~~~~Dvs~~-- 148 (350)
++|++|||||++ |||+++|++|+++|+ +|++++|+. ++.+......... ...+.++.||+++.
T Consensus 1 ~~k~~lITGas~~~GIG~aiA~~la~~G~-~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 79 (329)
T 3lt0_A 1 NEDICFIAGIGDTNGYGWGIAKELSKRNV-KIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTA 79 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTTC-EEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSG
T ss_pred CCcEEEEECCCCCCchHHHHHHHHHHCCC-EEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccch
Confidence 368999999986 999999999999996 899777654 2222222222221 22478889999988
Q ss_pred H------------------HHHHHHHHHHHcCCCCcEEEEccccCC-CCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHH
Q 018819 149 D------------------SVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLD 209 (350)
Q Consensus 149 ~------------------~v~~~~~~~~~~~g~id~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~ 209 (350)
+ +++++++++.+.++++|+||||||+.. ...++.+.+.++|++++++|+.|+++++++++|
T Consensus 80 ~~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p 159 (329)
T 3lt0_A 80 NDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVN 159 (329)
T ss_dssp GGCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGG
T ss_pred hhhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 7 999999999999999999999999742 346788899999999999999999999999999
Q ss_pred HHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchh-chhhhHHHHHHHHHHH
Q 018819 210 DLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAK-AYKDSKVCNMLTMQEF 288 (350)
Q Consensus 210 ~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Y~asKaa~~~~~~~l 288 (350)
.|.++ |+||++||.++..+ .++.. .|++||+++.+|++++
T Consensus 160 ~m~~~----g~Iv~isS~~~~~~-----------------------------------~~~~~~~Y~asKaal~~~~~~l 200 (329)
T 3lt0_A 160 IMKPQ----SSIISLTYHASQKV-----------------------------------VPGYGGGMSSAKAALESDTRVL 200 (329)
T ss_dssp GEEEE----EEEEEEECGGGTSC-----------------------------------CTTCTTTHHHHHHHHHHHHHHH
T ss_pred HHhhC----CeEEEEeCccccCC-----------------------------------CCcchHHHHHHHHHHHHHHHHH
Confidence 99874 69999999998753 35564 8999999999999999
Q ss_pred HHhhcCC-CCcEEEEeeCCcccCCccc
Q 018819 289 HRRFHEE-TGIAFASLYPGCIATTGLF 314 (350)
Q Consensus 289 a~e~~~~-~gi~v~~v~PG~v~t~~~~ 314 (350)
+.|+ .+ +||+||+|+||+|+|++..
T Consensus 201 a~el-~~~~gI~vn~v~PG~v~T~~~~ 226 (329)
T 3lt0_A 201 AYHL-GRNYNIRINTISAGPLKSRAAT 226 (329)
T ss_dssp HHHH-HHHHCCEEEEEEECCCCCHHHH
T ss_pred HHHh-CCccCeEEEEEecceeechhHh
Confidence 9999 55 6999999999999998753
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-34 Score=264.25 Aligned_cols=212 Identities=18% Similarity=0.213 Sum_probs=173.1
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEE---------ecChhHHHHHHHHhccCCCceEEEEccCCCHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMA---------CRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVR 152 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~---------~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~ 152 (350)
+++++|++|||||++|||+++|+.|+++|+ +|++. +|+.+..++..+++...+.. ..+|++|.++++
T Consensus 5 ~~l~gk~~lVTGas~GIG~~~a~~La~~Ga-~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~---~~~D~~~~~~~~ 80 (319)
T 1gz6_A 5 LRFDGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGK---AVANYDSVEAGE 80 (319)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCE---EEEECCCGGGHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCcccccccCCHHHHHHHHHHHHhhCCe---EEEeCCCHHHHH
Confidence 457899999999999999999999999996 88885 45667777777777554433 358999999999
Q ss_pred HHHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCC
Q 018819 153 QFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTN 232 (350)
Q Consensus 153 ~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~ 232 (350)
++++++.+.++++|+||||||+... .++.+.+.++|+.++++|+.|+++++++++|.|.+++ .|+||++||.++..+
T Consensus 81 ~~~~~~~~~~g~iD~lVnnAG~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~grIV~vsS~~~~~~ 157 (319)
T 1gz6_A 81 KLVKTALDTFGRIDVVVNNAGILRD-RSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN--YGRIIMTASASGIYG 157 (319)
T ss_dssp HHHHHHHHHTSCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHHHC
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEECChhhccC
Confidence 9999999999999999999998754 5677889999999999999999999999999998765 479999999887653
Q ss_pred CCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 233 TLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
.+++..|++||++++.|++.++.|+ .+.||+||+|+||++ |++
T Consensus 158 -----------------------------------~~~~~~Y~aSK~a~~~~~~~la~el-~~~gI~vn~v~PG~~-t~~ 200 (319)
T 1gz6_A 158 -----------------------------------NFGQANYSAAKLGLLGLANTLVIEG-RKNNIHCNTIAPNAG-SRM 200 (319)
T ss_dssp -----------------------------------CTTCHHHHHHHHHHHHHHHHHHHHT-GGGTEEEEEEEEECC-STT
T ss_pred -----------------------------------CCCCHHHHHHHHHHHHHHHHHHHHh-cccCEEEEEEeCCCc-ccc
Confidence 2467899999999999999999999 567999999999998 765
Q ss_pred ccccchhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 313 LFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
... ..+ +.+. ...+|+++|+.++++
T Consensus 201 ~~~-~~~------~~~~-----~~~~p~dvA~~~~~l 225 (319)
T 1gz6_A 201 TET-VMP------EDLV-----EALKPEYVAPLVLWL 225 (319)
T ss_dssp TGG-GSC------HHHH-----HHSCGGGTHHHHHHH
T ss_pred ccc-cCC------hhhh-----ccCCHHHHHHHHHHH
Confidence 321 111 0111 135788888776643
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=252.98 Aligned_cols=220 Identities=17% Similarity=0.176 Sum_probs=173.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccC--CCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~--~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+++|++|||||++|||++++++|+++|+ +|++++|+.+..++..+++... +.++.++.||++|+++++++++.+.+.
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (267)
T 2gdz_A 5 VNGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH 83 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999995 8999999988777766666542 457889999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCC-CCCeEEEEeccCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY-PSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~-~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
++++|+||||||+.. .++|++.+++|+.+++++++.++|.|.+++. +.|+||++||..+..+
T Consensus 84 ~g~id~lv~~Ag~~~---------~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-------- 146 (267)
T 2gdz_A 84 FGRLDILVNNAGVNN---------EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMP-------- 146 (267)
T ss_dssp HSCCCEEEECCCCCC---------SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSC--------
T ss_pred cCCCCEEEECCCCCC---------hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccCC--------
Confidence 999999999999742 3568999999999999999999999976421 1379999999988743
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHH--HHhhcCCCCcEEEEeeCCcccCCcccccch
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEF--HRRFHEETGIAFASLYPGCIATTGLFREHI 318 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~l--a~e~~~~~gi~v~~v~PG~v~t~~~~~~~~ 318 (350)
.++...|++||++++.+++++ +.|+ .+.||+||+|+||+|+|++......
T Consensus 147 ---------------------------~~~~~~Y~~sK~a~~~~~~~~ala~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~ 198 (267)
T 2gdz_A 147 ---------------------------VAQQPVYCASKHGIVGFTRSAALAANL-MNSGVRLNAICPGFVNTAILESIEK 198 (267)
T ss_dssp ---------------------------CTTCHHHHHHHHHHHHHHHHHHHHHHH-HTCCEEEEEEEESCBSSHHHHGGGC
T ss_pred ---------------------------CCCCchHHHHHHHHHHHHHHHHHHHHh-ccCCcEEEEEecCcCcchhhhcccc
Confidence 256789999999999999985 5777 5679999999999999986422110
Q ss_pred h--hHHhh--hhhhH-HhhhcCccchhhhhhhcccc
Q 018819 319 P--LFRLL--FPPFQ-KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ~--~~~~~--~~~~~-~~~~~~~~s~~~~a~~i~~~ 349 (350)
+ ..... ...+. .....++.+|+|+|+.++++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~v~~l 234 (267)
T 2gdz_A 199 EENMGQYIEYKDHIKDMIKYYGILDPPLIANGLITL 234 (267)
T ss_dssp HHHHGGGGGGHHHHHHHHHHHCCBCHHHHHHHHHHH
T ss_pred ccccchhhhHHHHHHHHhccccCCCHHHHHHHHHHH
Confidence 1 00000 00000 01113467999999988753
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-34 Score=267.28 Aligned_cols=187 Identities=22% Similarity=0.277 Sum_probs=154.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhH---HHHHHHHh---ccCCCceEEEEccCCCHHHHHHHHHHH
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK---AERAAKSA---GMAKENYTIMHLDLASLDSVRQFVDTF 158 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~---~~~~~~~l---~~~~~~v~~~~~Dvs~~~~v~~~~~~~ 158 (350)
++|++|||||++|||+++|++|+++|+ +|+++.|+... ..+..+.+ ...+.++.++.+|++|.++++++++++
T Consensus 1 ~~k~vlVTGas~GIG~ala~~L~~~G~-~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 79 (327)
T 1jtv_A 1 ARTVVLITGCSSGIGLHLAVRLASDPS-QSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERV 79 (327)
T ss_dssp CCEEEEESCCSSHHHHHHHHHHHTCTT-CCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-ceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHH
Confidence 367999999999999999999999996 67777665332 22222222 223457899999999999999999987
Q ss_pred HHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCC
Q 018819 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (350)
Q Consensus 159 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (350)
. ++++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||.++..+
T Consensus 80 ~--~g~iD~lVnnAG~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~--~g~IV~isS~~~~~~------ 148 (327)
T 1jtv_A 80 T--EGRVDVLVCNAGLGLL-GPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRG--SGRVLVTGSVGGLMG------ 148 (327)
T ss_dssp T--TSCCSEEEECCCCCCC-SCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEEEEGGGTSC------
T ss_pred h--cCCCCEEEECCCcCCC-CchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCEEEEECCcccccC------
Confidence 3 5899999999998643 6677889999999999999999999999999997654 479999999988753
Q ss_pred CCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.++...|++||++++.+++.++.|+ .+.||+|++|+||+|+|++.
T Consensus 149 -----------------------------~~~~~~Y~aSK~a~~~~~~~la~el-~~~gI~v~~v~PG~v~T~~~ 193 (327)
T 1jtv_A 149 -----------------------------LPFNDVYCASKFALEGLCESLAVLL-LPFGVHLSLIECGPVHTAFM 193 (327)
T ss_dssp -----------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCC---
T ss_pred -----------------------------CCCChHHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEEeCcccChHH
Confidence 2567899999999999999999999 56799999999999999975
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=250.31 Aligned_cols=215 Identities=22% Similarity=0.280 Sum_probs=166.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCC-cEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga-~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
|++|++|||||++|||++++++|+++|+ .+|++++|+.+..+++.+ + .+.++.++.+|++|+++++++++++.+.+
T Consensus 1 m~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~~-~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (250)
T 1yo6_A 1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKS-I--KDSRVHVLPLTVTCDKSLDTFVSKVGEIV 77 (250)
T ss_dssp CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHT-C--CCTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHHHh-c--cCCceEEEEeecCCHHHHHHHHHHHHHhc
Confidence 3578999999999999999999999993 389999998776655432 2 35678999999999999999999999888
Q ss_pred C--CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcC------CC---CCCeEEEEeccCCCC
Q 018819 163 R--PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQS------DY---PSKRLIIVGSITGNT 231 (350)
Q Consensus 163 g--~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~------~~---~~g~iV~vSS~~~~~ 231 (350)
+ ++|+||||||+..+..++.+.+.++|+..+++|+.++++++++++|.|.++ +. ..++||++||..+..
T Consensus 78 g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~ 157 (250)
T 1yo6_A 78 GSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSI 157 (250)
T ss_dssp GGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCS
T ss_pred CCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCcccc
Confidence 8 899999999987534677788999999999999999999999999998764 20 036999999998765
Q ss_pred CCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCC
Q 018819 232 NTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (350)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~ 311 (350)
+.... ..+.++...|++||++++.+++.++.++ .+.||++++|+||+|+|+
T Consensus 158 ~~~~~----------------------------~~~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~ 208 (250)
T 1yo6_A 158 TDNTS----------------------------GSAQFPVLAYRMSKAAINMFGRTLAVDL-KDDNVLVVNFCPGWVQTN 208 (250)
T ss_dssp TTCCS----------------------------TTSSSCBHHHHHHHHHHHHHHHHHHHHT-GGGTCEEEEEECCCC---
T ss_pred CCccc----------------------------ccccCCccHHHHHHHHHHHHHHHHHHHh-ccCCeEEEEEcCCceecC
Confidence 32000 0011467789999999999999999999 567999999999999998
Q ss_pred cccccchhhHHhhhhhhHHhhhcCccchhhhhhhccc
Q 018819 312 GLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
+... ....+|+++|+.+++
T Consensus 209 ~~~~------------------~~~~~~~~~a~~~~~ 227 (250)
T 1yo6_A 209 LGGK------------------NAALTVEQSTAELIS 227 (250)
T ss_dssp ----------------------------HHHHHHHHH
T ss_pred CCCC------------------CCCCCHHHHHHHHHH
Confidence 6421 123577777776654
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=257.84 Aligned_cols=212 Identities=21% Similarity=0.191 Sum_probs=149.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|++|||||++|||+++|++|++ |+ +|++++|+.+..++..+ + .++.++.+|+++.++ .+.+.+..+.+
T Consensus 2 ~l~~k~vlITGas~gIG~~~a~~l~~-g~-~v~~~~r~~~~~~~~~~-~----~~~~~~~~D~~~~~~-~~~~~~~~~~~ 73 (245)
T 3e9n_A 2 SLKKKIAVVTGATGGMGIEIVKDLSR-DH-IVYALGRNPEHLAALAE-I----EGVEPIESDIVKEVL-EEGGVDKLKNL 73 (245)
T ss_dssp ----CEEEEESTTSHHHHHHHHHHTT-TS-EEEEEESCHHHHHHHHT-S----TTEEEEECCHHHHHH-TSSSCGGGTTC
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHhC-CC-eEEEEeCCHHHHHHHHh-h----cCCcceecccchHHH-HHHHHHHHHhc
Confidence 56889999999999999999999988 84 89999999877665543 2 358899999999877 44445555677
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|+||||||+... ..+.+.+.++|++++++|+.|+++++++++|.|.+++ |+||++||.++..+
T Consensus 74 ~~id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~---g~iv~isS~~~~~~---------- 139 (245)
T 3e9n_A 74 DHVDTLVHAAAVARD-TTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS---GCVIYINSGAGNGP---------- 139 (245)
T ss_dssp SCCSEEEECC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEEC-----------------
T ss_pred CCCCEEEECCCcCCC-CchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC---CeEEEEcCcccccC----------
Confidence 899999999998754 6777889999999999999999999999999997753 79999999988753
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.++...|++||++++.++++++.|+ .+.||+|++|+||+|+|++.........
T Consensus 140 -------------------------~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~~~- 192 (245)
T 3e9n_A 140 -------------------------HPGNTIYAASKHALRGLADAFRKEE-ANNGIRVSTVSPGPTNTPMLQGLMDSQG- 192 (245)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCC--------------
T ss_pred -------------------------CCCchHHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecCCccCchhhhhhhhhh-
Confidence 3677899999999999999999999 5679999999999999987532111100
Q ss_pred hhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 323 LLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.......+.+|+|+|+.++++
T Consensus 193 ------~~~~~~~~~~p~dvA~~i~~l 213 (245)
T 3e9n_A 193 ------TNFRPEIYIEPKEIANAIRFV 213 (245)
T ss_dssp ---------CCGGGSCHHHHHHHHHHH
T ss_pred ------cccccccCCCHHHHHHHHHHH
Confidence 111123467999999988653
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=252.80 Aligned_cols=217 Identities=17% Similarity=0.232 Sum_probs=168.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChh--HHHHHHHHhccCCCceEEEEccCCCH-HHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL--KAERAAKSAGMAKENYTIMHLDLASL-DSVRQFVDTFR 159 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~--~~~~~~~~l~~~~~~v~~~~~Dvs~~-~~v~~~~~~~~ 159 (350)
++++|++|||||++|||+++|++|+++|+.+|++++|+.. ..+++.+.. .+.++.++.||++|+ ++++++++++.
T Consensus 2 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (254)
T 1sby_A 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAIN--PKVNITFHTYDVTVPVAESKKLLKKIF 79 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHC--TTSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhC--CCceEEEEEEecCCChHHHHHHHHHHH
Confidence 4688999999999999999999999999645888888753 333333222 145788999999998 99999999999
Q ss_pred HcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCC-CCCeEEEEeccCCCCCCCCCCC
Q 018819 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY-PSKRLIIVGSITGNTNTLAGNV 238 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~-~~g~iV~vSS~~~~~~~~~~~~ 238 (350)
+.++++|+||||||+. +.++|++.+++|+.|+++++++++|.|.+++. +.|+||++||.++..+
T Consensus 80 ~~~g~id~lv~~Ag~~---------~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------ 144 (254)
T 1sby_A 80 DQLKTVDILINGAGIL---------DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNA------ 144 (254)
T ss_dssp HHHSCCCEEEECCCCC---------CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSC------
T ss_pred HhcCCCCEEEECCccC---------CHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhccC------
Confidence 9999999999999974 34678999999999999999999999976521 1379999999988743
Q ss_pred CCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch
Q 018819 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (350)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~ 318 (350)
.++...|++||++++.+++.++.++ .+.||+|++|+||+|+|++.....
T Consensus 145 -----------------------------~~~~~~Y~~sK~a~~~~~~~la~~~-~~~gi~v~~v~Pg~v~t~~~~~~~- 193 (254)
T 1sby_A 145 -----------------------------IHQVPVYSASKAAVVSFTNSLAKLA-PITGVTAYSINPGITRTPLVHTFN- 193 (254)
T ss_dssp -----------------------------CTTSHHHHHHHHHHHHHHHHHHHHH-HHHSEEEEEEEECSEESHHHHSCC-
T ss_pred -----------------------------CCCchHHHHHHHHHHHHHHHHHHHh-ccCCeEEEEEecCCccCccccccc-
Confidence 3567899999999999999999987 456999999999999998653211
Q ss_pred hhHHhhhhhhHHhh-hcCccchhhhhhhccc
Q 018819 319 PLFRLLFPPFQKYI-TKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 319 ~~~~~~~~~~~~~~-~~~~~s~~~~a~~i~~ 348 (350)
.+.. ..+.+.... ...+.+|+|+|+.+++
T Consensus 194 ~~~~-~~~~~~~~~~~~~~~~~~dvA~~i~~ 223 (254)
T 1sby_A 194 SWLD-VEPRVAELLLSHPTQTSEQCGQNFVK 223 (254)
T ss_dssp CGGG-SCTTHHHHHTTSCCEEHHHHHHHHHH
T ss_pred hhhh-hhHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 0000 001111111 1234589999998764
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-33 Score=247.54 Aligned_cols=220 Identities=18% Similarity=0.184 Sum_probs=174.0
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+.+++|++|||||++|||++++++|+++|+ +|++++|+.++.++..+++. .+.++.+|++|+++++++++ .
T Consensus 3 ~~l~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~----~ 73 (244)
T 3d3w_A 3 LFLAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECP----GIEPVCVDLGDWEATERALG----S 73 (244)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHST----TCEEEECCTTCHHHHHHHHT----T
T ss_pred cccCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcC----CCCEEEEeCCCHHHHHHHHH----H
Confidence 457899999999999999999999999995 89999999877776665542 35667999999999988876 5
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++++|+||||||.... .++.+.+.++|++.+++|+.+++++++++.+.|.+++. .|+||++||..+..+
T Consensus 74 ~~~id~vi~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~~~--------- 142 (244)
T 3d3w_A 74 VGPVDLLVNNAAVALL-QPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGV-PGAIVNVSSQCSQRA--------- 142 (244)
T ss_dssp CCCCCEEEECCCCCCC-BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEECCGGGTSC---------
T ss_pred cCCCCEEEECCccCCC-cchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-CcEEEEeCchhhccC---------
Confidence 6789999999998643 56677899999999999999999999999999876431 269999999887642
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.++...|++||++++.+++.++.|+ .+.||++++|+||+|.|++....... .
T Consensus 143 --------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~~i~v~~v~Pg~v~t~~~~~~~~~-~ 194 (244)
T 3d3w_A 143 --------------------------VTNHSVYCSTKGALDMLTKVMALEL-GPHKIRVNAVNPTVVMTSMGQATWSD-P 194 (244)
T ss_dssp --------------------------CTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBTTTTHHHHSCS-T
T ss_pred --------------------------CCCCchHHHHHHHHHHHHHHHHHHh-cccCeEEEEEEeccccccchhhhccC-h
Confidence 3567899999999999999999998 56799999999999999864321100 0
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..............+.+|+|+|+.++++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~dva~~~~~l 222 (244)
T 3d3w_A 195 HKAKTMLNRIPLGKFAEVEHVVNAILFL 222 (244)
T ss_dssp THHHHHHHTCTTCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCCCcCHHHHHHHHHHH
Confidence 0000011111234578999999987653
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=255.21 Aligned_cols=202 Identities=13% Similarity=0.092 Sum_probs=167.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC-
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG- 162 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~- 162 (350)
.++|++|||||++|||++++++|+++|+ +|++++|+.+..+ ....++.+|++|+++++++++++.+.+
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~----------~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 73 (241)
T 1dhr_A 5 GEARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVENEEA----------SASVIVKMTDSFTEQADQVTAEVGKLLG 73 (241)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCCTTS----------SEEEECCCCSCHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCChhhcc----------CCcEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 4678999999999999999999999995 8999999864421 135678899999999999999999988
Q ss_pred -CCCcEEEEccccCCCCCCC-CCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 163 -RPLDVLVCNAAVYLPTAKE-PTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 163 -g~id~lv~~Ag~~~~~~~~-~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
+++|+||||||+... .++ .+.+.++|++.+++|+.++++++++++|.|.+ +|+||++||..+..+
T Consensus 74 ~g~iD~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~----~g~iv~isS~~~~~~-------- 140 (241)
T 1dhr_A 74 DQKVDAILCVAGGWAG-GNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKE----GGLLTLAGAKAALDG-------- 140 (241)
T ss_dssp TCCEEEEEECCCCCCC-BCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE----EEEEEEECCGGGGSC--------
T ss_pred CCCCCEEEEcccccCC-CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhcc----CCEEEEECCHHHccC--------
Confidence 799999999998654 555 67889999999999999999999999999875 369999999988753
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcC--CCCcEEEEeeCCcccCCcccccch
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE--ETGIAFASLYPGCIATTGLFREHI 318 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~--~~gi~v~~v~PG~v~t~~~~~~~~ 318 (350)
.++...|++||++++.+++.++.|+ . +.||+||+|+||+|+|++.....
T Consensus 141 ---------------------------~~~~~~Y~asK~a~~~~~~~la~e~-~~~~~gi~v~~v~PG~v~T~~~~~~~- 191 (241)
T 1dhr_A 141 ---------------------------TPGMIGYGMAKGAVHQLCQSLAGKN-SGMPSGAAAIAVLPVTLDTPMNRKSM- 191 (241)
T ss_dssp ---------------------------CTTBHHHHHHHHHHHHHHHHHTSTT-SSCCTTCEEEEEEESCEECHHHHHHS-
T ss_pred ---------------------------CCCchHHHHHHHHHHHHHHHHHHHh-ccCCCCeEEEEEecCcccCccccccC-
Confidence 3577899999999999999999998 5 67999999999999998642110
Q ss_pred hhHHhhhhhhHHhhhcCccchhhhhhhccc
Q 018819 319 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
+ ... .....+|+|+|+.+++
T Consensus 192 ~-----~~~-----~~~~~~~~~vA~~v~~ 211 (241)
T 1dhr_A 192 P-----EAD-----FSSWTPLEFLVETFHD 211 (241)
T ss_dssp T-----TSC-----GGGSEEHHHHHHHHHH
T ss_pred c-----chh-----hccCCCHHHHHHHHHH
Confidence 0 000 1234678888887764
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=252.57 Aligned_cols=199 Identities=24% Similarity=0.312 Sum_probs=163.8
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCC--cEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGK--WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 158 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga--~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~ 158 (350)
...+++|++|||||++|||+++|++|+++|+ .+|++++|+.+..+.+ +++...+.++.++.||++|.++++++++++
T Consensus 16 ~~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~-~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 94 (267)
T 1sny_A 16 PRGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKEL-EDLAKNHSNIHILEIDLRNFDAYDKLVADI 94 (267)
T ss_dssp ----CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHH-HHHHHHCTTEEEEECCTTCGGGHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHH-HHhhccCCceEEEEecCCChHHHHHHHHHH
Confidence 3467899999999999999999999999993 4999999987654433 333223557899999999999999999999
Q ss_pred HHcCC--CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcC------CC---CCCeEEEEecc
Q 018819 159 RRSGR--PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQS------DY---PSKRLIIVGSI 227 (350)
Q Consensus 159 ~~~~g--~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~------~~---~~g~iV~vSS~ 227 (350)
.+.++ ++|+||||||+.....++.+.+.++|++.+++|+.++++++++++|.|.++ +. ..++||++||.
T Consensus 95 ~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~ 174 (267)
T 1sny_A 95 EGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSI 174 (267)
T ss_dssp HHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCG
T ss_pred HHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEecc
Confidence 98887 899999999987534667788999999999999999999999999998764 10 02699999999
Q ss_pred CCCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCc
Q 018819 228 TGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGC 307 (350)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~ 307 (350)
.+..+.. +.++...|++||++++.+++.++.++ .+.||++++|+||+
T Consensus 175 ~~~~~~~--------------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~ 221 (267)
T 1sny_A 175 LGSIQGN--------------------------------TDGGMYAYRTSKSALNAATKSLSVDL-YPQRIMCVSLHPGW 221 (267)
T ss_dssp GGCSTTC--------------------------------CSCCCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEECCCS
T ss_pred cccccCC--------------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-hcCCcEEEEeCCcc
Confidence 8865320 12356789999999999999999999 56799999999999
Q ss_pred ccCCcc
Q 018819 308 IATTGL 313 (350)
Q Consensus 308 v~t~~~ 313 (350)
|+|++.
T Consensus 222 v~t~~~ 227 (267)
T 1sny_A 222 VKTDMG 227 (267)
T ss_dssp BCSTTT
T ss_pred eecCCC
Confidence 999865
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-34 Score=251.94 Aligned_cols=200 Identities=13% Similarity=0.124 Sum_probs=166.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC--
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG-- 162 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~-- 162 (350)
++|++|||||++|||++++++|+++| .+|++++|+.+..+ ....++.+|++|+++++++++++.+.+
T Consensus 2 ~~k~vlITGas~gIG~~~a~~l~~~G-~~V~~~~r~~~~~~----------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 70 (236)
T 1ooe_A 2 SSGKVIVYGGKGALGSAILEFFKKNG-YTVLNIDLSANDQA----------DSNILVDGNKNWTEQEQSILEQTASSLQG 70 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTT-EEEEEEESSCCTTS----------SEEEECCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEecCccccc----------cccEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 57899999999999999999999999 59999999865421 135678899999999999999999888
Q ss_pred CCCcEEEEccccCCCCCCC-CCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKE-PTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~-~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
+++|+||||||+... .++ .+.+.++|++.+++|+.++++++++++|.|.+ +|+||++||..+..+
T Consensus 71 g~id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~----~g~iv~isS~~~~~~--------- 136 (236)
T 1ooe_A 71 SQVDGVFCVAGGWAG-GSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKP----GGLLQLTGAAAAMGP--------- 136 (236)
T ss_dssp CCEEEEEECCCCCCC-BCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE----EEEEEEECCGGGGSC---------
T ss_pred CCCCEEEECCcccCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcc----CCEEEEECchhhccC---------
Confidence 799999999998654 455 67889999999999999999999999999865 369999999988743
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcC--CCCcEEEEeeCCcccCCcccccchh
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE--ETGIAFASLYPGCIATTGLFREHIP 319 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~--~~gi~v~~v~PG~v~t~~~~~~~~~ 319 (350)
.++...|++||++++.+++.++.|+ . +.||+||+|+||+|+|++..... +
T Consensus 137 --------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~~~gi~v~~v~Pg~v~t~~~~~~~-~ 188 (236)
T 1ooe_A 137 --------------------------TPSMIGYGMAKAAVHHLTSSLAAKD-SGLPDNSAVLTIMPVTLDTPMNRKWM-P 188 (236)
T ss_dssp --------------------------CTTBHHHHHHHHHHHHHHHHHHSTT-SSCCTTCEEEEEEESCBCCHHHHHHS-T
T ss_pred --------------------------CCCcHHHHHHHHHHHHHHHHHHHHh-cccCCCeEEEEEecCcccCcchhhcC-C
Confidence 3577899999999999999999998 5 77999999999999998642110 0
Q ss_pred hHHhhhhhhHHhhhcCccchhhhhhhcc
Q 018819 320 LFRLLFPPFQKYITKGYVSEDEAGKRLA 347 (350)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~s~~~~a~~i~ 347 (350)
... .....+|+|+|+.++
T Consensus 189 -----~~~-----~~~~~~~~dvA~~i~ 206 (236)
T 1ooe_A 189 -----NAD-----HSSWTPLSFISEHLL 206 (236)
T ss_dssp -----TCC-----GGGCBCHHHHHHHHH
T ss_pred -----Ccc-----ccccCCHHHHHHHHH
Confidence 000 123468888888775
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=243.46 Aligned_cols=219 Identities=18% Similarity=0.224 Sum_probs=173.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|++|||||+||||++++++|+++|+ +|++++|+.+..++..+++. .+.++.+|++|+++++++++ .+
T Consensus 4 ~~~~~~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~----~~ 74 (244)
T 1cyd_A 4 NFSGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECP----GIEPVCVDLGDWDATEKALG----GI 74 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHST----TCEEEECCTTCHHHHHHHHT----TC
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcc----CCCcEEecCCCHHHHHHHHH----Hc
Confidence 46889999999999999999999999995 89999999877766655432 35677999999999988876 56
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|+||||||.... .++.+.+.++|++.+++|+.|++++++++.+.|.+++. .|+||++||..+..+
T Consensus 75 ~~id~vi~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-~~~iv~~sS~~~~~~---------- 142 (244)
T 1cyd_A 75 GPVDLLVNNAALVIM-QPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGV-PGSIVNVSSMVAHVT---------- 142 (244)
T ss_dssp CCCSEEEECCCCCCC-BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEECCGGGTSC----------
T ss_pred CCCCEEEECCcccCC-CCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCC-CeEEEEEcchhhcCC----------
Confidence 789999999998643 56678899999999999999999999999999876431 269999999887642
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.++...|++||++++.+++.++.++ .+.||++++|+||++.|++....... ..
T Consensus 143 -------------------------~~~~~~Y~~sK~a~~~~~~~~a~~~-~~~gi~v~~v~pg~v~t~~~~~~~~~-~~ 195 (244)
T 1cyd_A 143 -------------------------FPNLITYSSTKGAMTMLTKAMAMEL-GPHKIRVNSVNPTVVLTDMGKKVSAD-PE 195 (244)
T ss_dssp -------------------------CTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBTTHHHHHHTCC-HH
T ss_pred -------------------------CCCcchhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecCcccCccccccccC-HH
Confidence 3567899999999999999999998 56799999999999999864211100 01
Q ss_pred hhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 323 LLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
+............+.+++|+|+.++++
T Consensus 196 ~~~~~~~~~~~~~~~~~~dva~~~~~l 222 (244)
T 1cyd_A 196 FARKLKERHPLRKFAEVEDVVNSILFL 222 (244)
T ss_dssp HHHHHHHHSTTSSCBCHHHHHHHHHHH
T ss_pred HHHHHHhcCCccCCCCHHHHHHHHHHH
Confidence 100111111235578999999987653
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=281.38 Aligned_cols=216 Identities=16% Similarity=0.131 Sum_probs=161.6
Q ss_pred CcCccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEec---------ChhHHHHHHHHhccCCCceEEEEccCCCH
Q 018819 78 PQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR---------DFLKAERAAKSAGMAKENYTIMHLDLASL 148 (350)
Q Consensus 78 ~~~~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r---------~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~ 148 (350)
+...++++||++|||||++|||+++|+.|+++|+ +|++++| +.+..++..+++...+..+ .+|++|.
T Consensus 11 ~~~~~~l~gk~~lVTGas~GIG~aiA~~La~~Ga-~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~D~~d~ 86 (613)
T 3oml_A 11 SDGKLRYDGRVAVVTGAGAGLGREYALLFAERGA-KVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEA---VADYNSV 86 (613)
T ss_dssp ----CCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEC--------------CHHHHHHHHHHTTCCE---EECCCCG
T ss_pred cccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeE---EEEeCCH
Confidence 3445678999999999999999999999999996 8888877 5566677777776555443 4899999
Q ss_pred HHHHHHHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccC
Q 018819 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (350)
Q Consensus 149 ~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~ 228 (350)
++++++++++.+.+++||+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|++++ .|+||++||++
T Consensus 87 ~~~~~~~~~~~~~~g~iDiLVnnAGi~~~-~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~--~g~IV~isS~a 163 (613)
T 3oml_A 87 IDGAKVIETAIKAFGRVDILVNNAGILRD-RSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQN--YGRIIMTSSNS 163 (613)
T ss_dssp GGHHHHHC----------CEECCCCCCCC-CCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--CEEEEEECCHH
T ss_pred HHHHHHHHHHHHHCCCCcEEEECCCCCCC-CCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCEEEEECCHH
Confidence 99999999999999999999999999754 6788999999999999999999999999999998876 58999999998
Q ss_pred CCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcc
Q 018819 229 GNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI 308 (350)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v 308 (350)
+..+ .+++..|++||+|+.+|+++++.|+ .+.||+||+|+||++
T Consensus 164 ~~~~-----------------------------------~~~~~~Y~asKaal~~lt~~la~e~-~~~gI~vn~v~Pg~~ 207 (613)
T 3oml_A 164 GIYG-----------------------------------NFGQVNYTAAKMGLIGLANTVAIEG-ARNNVLCNVIVPTAA 207 (613)
T ss_dssp HHHC-----------------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEEC--
T ss_pred HcCC-----------------------------------CCCChHHHHHHHHHHHHHHHHHHHh-CccCeEEEEEECCCC
Confidence 8764 2577899999999999999999999 677999999999975
Q ss_pred cCCcccccchhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 309 ATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 309 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
|++......+ .. ....+|+++|+.+++|
T Consensus 208 -t~~~~~~~~~-------~~-----~~~~~pedvA~~v~~L 235 (613)
T 3oml_A 208 -SRMTEGILPD-------IL-----FNELKPKLIAPVVAYL 235 (613)
T ss_dssp -----CCCCCH-------HH-----HTTCCGGGTHHHHHHT
T ss_pred -Chhhhhccch-------hh-----hhcCCHHHHHHHHHHh
Confidence 5554321111 11 1235888888887664
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-33 Score=247.93 Aligned_cols=211 Identities=17% Similarity=0.200 Sum_probs=165.0
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
..+++|++|||||++|||+++|+.|+++|+ +|++++|+.+.. +++ + .+.++ ||+ .++++++++++
T Consensus 15 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~----~~~---~-~~~~~-~D~--~~~~~~~~~~~--- 79 (249)
T 1o5i_A 15 LGIRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEELL----KRS---G-HRYVV-CDL--RKDLDLLFEKV--- 79 (249)
T ss_dssp -CCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHH----HHT---C-SEEEE-CCT--TTCHHHHHHHS---
T ss_pred hccCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHH----Hhh---C-CeEEE-eeH--HHHHHHHHHHh---
Confidence 467899999999999999999999999995 899999986332 222 2 56677 999 45677777665
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
.++|+||||||+... .++.+.+.++|++++++|+.|++++++.++|.|.+++ .|+||++||..+..+
T Consensus 80 -~~iD~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~~--------- 146 (249)
T 1o5i_A 80 -KEVDILVLNAGGPKA-GFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG--WGRIVAITSFSVISP--------- 146 (249)
T ss_dssp -CCCSEEEECCCCCCC-BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTSC---------
T ss_pred -cCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEEcchHhcCC---------
Confidence 379999999998643 5677889999999999999999999999999998765 479999999988743
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.++...|++||++++.+++.++.|+ .+.||++|+|+||+|+|++.........
T Consensus 147 --------------------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~ 199 (249)
T 1o5i_A 147 --------------------------IENLYTSNSARMALTGFLKTLSFEV-APYGITVNCVAPGWTETERVKELLSEEK 199 (249)
T ss_dssp --------------------------CTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCTTHHHHSCHHH
T ss_pred --------------------------CCCCchHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCCCccCcccccchhhH
Confidence 3567899999999999999999999 5679999999999999987522100000
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.. .........++.+|+|+|+.++++
T Consensus 200 ~~--~~~~~~p~~~~~~~~dvA~~i~~l 225 (249)
T 1o5i_A 200 KK--QVESQIPMRRMAKPEEIASVVAFL 225 (249)
T ss_dssp HH--HHHTTSTTSSCBCHHHHHHHHHHH
T ss_pred HH--HHHhcCCCCCCcCHHHHHHHHHHH
Confidence 00 000011224567999999987653
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-33 Score=249.14 Aligned_cols=237 Identities=21% Similarity=0.263 Sum_probs=172.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHH-cCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAE-TGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~-~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
++|++|||||++|||++++++|++ +|+ +|++++|+.+..++..+++...+.++.++.+|++|.++++++++++.+.++
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG 81 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 578999999999999999999999 995 999999998888777777766567889999999999999999999999999
Q ss_pred CCcEEEEccccCCCCCCCCCCC-HHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCC---
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFT-AEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP--- 239 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~-~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~--- 239 (350)
++|+||||||+... .. .+.+ .++|+.++++|+.|++++++++++.|.+ .|+||++||..+..+.. ...+
T Consensus 82 ~id~li~~Ag~~~~-~~-~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~----~g~iv~~sS~~~~~~~~-~~~~~~~ 154 (276)
T 1wma_A 82 GLDVLVNNAGIAFK-VA-DPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKP----QGRVVNVSSIMSVRALK-SCSPELQ 154 (276)
T ss_dssp SEEEEEECCCCCCC-TT-CCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEE----EEEEEEECCHHHHHHHH-TSCHHHH
T ss_pred CCCEEEECCccccc-CC-CccccHHHHHhhhheeeeeHHHHHHHHHHhhCC----CCEEEEECChhhhcccc-cCChhHH
Confidence 99999999998643 22 2334 5899999999999999999999998865 26999999987763200 0000
Q ss_pred -----CCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCC---CCcEEEEeeCCcccCC
Q 018819 240 -----PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEE---TGIAFASLYPGCIATT 311 (350)
Q Consensus 240 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~---~gi~v~~v~PG~v~t~ 311 (350)
.......+....................++ ...|++||++++.+++.++.++... .||++++|+||+|+|+
T Consensus 155 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i~v~~v~PG~v~t~ 233 (276)
T 1wma_A 155 QKFRSETITEEELVGLMNKFVEDTKKGVHQKEGWP-SSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTD 233 (276)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHHHTTCTTTTTCC-SCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCST
T ss_pred hhccccccchhhhhhhhhhhhhhhcccccccCCCc-cchhHHHHHHHHHHHHHHHHHhhcccCCCceEEEEecCCccccC
Confidence 000000000000000000000000000112 2789999999999999999998321 6999999999999998
Q ss_pred cccccchhhHHhhhhhhHHhhhcCccchhhhhhhccc
Q 018819 312 GLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
+... ..+.+|+++|+.+++
T Consensus 234 ~~~~------------------~~~~~~~~~a~~~~~ 252 (276)
T 1wma_A 234 MAGP------------------KATKSPEEGAETPVY 252 (276)
T ss_dssp TTCT------------------TCSBCHHHHTHHHHH
T ss_pred cCCc------------------cccCChhHhhhhHhh
Confidence 6532 124678887777664
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-33 Score=259.14 Aligned_cols=226 Identities=15% Similarity=0.167 Sum_probs=143.4
Q ss_pred ccCCCEEEEEcC--CCchHHHHHHHHHHcCCcEEEEEecCh-----------hHHH-----------HHHHHhccCCCc-
Q 018819 83 TLRKGSVIITGA--SSGLGLATAKALAETGKWHIIMACRDF-----------LKAE-----------RAAKSAGMAKEN- 137 (350)
Q Consensus 83 ~l~~~~~lItGg--s~gIG~~ia~~la~~Ga~~Vi~~~r~~-----------~~~~-----------~~~~~l~~~~~~- 137 (350)
.+++|++||||| ++|||+++|+.|+++|+ +|++++|+. +.++ +..+++...+..
T Consensus 6 ~l~~k~~lVTGa~~s~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (319)
T 2ptg_A 6 DLRGKTAFVAGVADSNGYGWAICKLLRAAGA-RVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPVDL 84 (319)
T ss_dssp CCTTCEEEEECCCCTTSHHHHHHHHHHHTTC-EEEEEECHHHHHHHHC--------------------------------
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHHCCC-EEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhccccc
Confidence 478999999999 89999999999999996 888887642 1111 122233222211
Q ss_pred --eEEEEcc------------CCC--------HHHHHHHHHHHHHcCCCCcEEEEccccCC-CCCCCCCCCHHHHHHHHh
Q 018819 138 --YTIMHLD------------LAS--------LDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVG 194 (350)
Q Consensus 138 --v~~~~~D------------vs~--------~~~v~~~~~~~~~~~g~id~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~ 194 (350)
..++.+| ++| +++++++++++.+.++++|+||||||+.. ...++.+.+.++|+++++
T Consensus 85 ~~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~ 164 (319)
T 2ptg_A 85 VFDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAVS 164 (319)
T ss_dssp CCSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHHHH
T ss_pred cccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHHHh
Confidence 2344433 333 45889999999999999999999999753 235677889999999999
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCch-hc
Q 018819 195 TNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGA-KA 273 (350)
Q Consensus 195 ~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 273 (350)
+|+.|+++++++++|+|.+ +|+||++||.++..+ .++. ..
T Consensus 165 vN~~g~~~l~~~~~~~m~~----~g~Iv~isS~~~~~~-----------------------------------~~~~~~~ 205 (319)
T 2ptg_A 165 SSSYSFVSLLQHFLPLMKE----GGSALALSYIASEKV-----------------------------------IPGYGGG 205 (319)
T ss_dssp HHTHHHHHHHHHHGGGEEE----EEEEEEEEECC----------------------------------------------
T ss_pred HhhHHHHHHHHHHHHHHhc----CceEEEEeccccccc-----------------------------------cCccchh
Confidence 9999999999999999976 269999999988643 2455 58
Q ss_pred hhhhHHHHHHHHHHHHHhhcCC-CCcEEEEeeCCcccCCcccccch---h-hHHhhhhhh-HHhhhcCccchhhhhhhcc
Q 018819 274 YKDSKVCNMLTMQEFHRRFHEE-TGIAFASLYPGCIATTGLFREHI---P-LFRLLFPPF-QKYITKGYVSEDEAGKRLA 347 (350)
Q Consensus 274 Y~asKaa~~~~~~~la~e~~~~-~gi~v~~v~PG~v~t~~~~~~~~---~-~~~~~~~~~-~~~~~~~~~s~~~~a~~i~ 347 (350)
|++||++++.|+++++.|+ .+ +||+||+|+||+|+|++...... + +.......+ ......++.+|+|+|+.++
T Consensus 206 Y~asKaal~~l~~~la~el-~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~peevA~~v~ 284 (319)
T 2ptg_A 206 MSSAKAALESDCRTLAFEA-GRARAVRVNCISAGPLKSRAASAIGKAGDKTFIDLAIDYSEANAPLQKELESDDVGRAAL 284 (319)
T ss_dssp -------THHHHHHHHHHH-HHHHCCEEEEEEECCCC-------------------------------CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh-ccccCeeEEEEeeCCccChhhhhcccccchhhHHHHHHHHhccCCCCCCCCHHHHHHHHH
Confidence 9999999999999999998 43 69999999999999987532110 0 000000000 1112345679999999887
Q ss_pred cc
Q 018819 348 QV 349 (350)
Q Consensus 348 ~~ 349 (350)
+|
T Consensus 285 ~L 286 (319)
T 2ptg_A 285 FL 286 (319)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-33 Score=256.56 Aligned_cols=225 Identities=12% Similarity=0.122 Sum_probs=166.0
Q ss_pred ccCCCEEEEEcC--CCchHHHHHHHHHHcCCcEEEEEecChh-----------HHHHHHHHhccCCCc---eEEEEcc--
Q 018819 83 TLRKGSVIITGA--SSGLGLATAKALAETGKWHIIMACRDFL-----------KAERAAKSAGMAKEN---YTIMHLD-- 144 (350)
Q Consensus 83 ~l~~~~~lItGg--s~gIG~~ia~~la~~Ga~~Vi~~~r~~~-----------~~~~~~~~l~~~~~~---v~~~~~D-- 144 (350)
.+++|++||||| ++|||+++|+.|+++|+ +|++++|+.. .+++. +++.. +.. +.++.+|
T Consensus 6 ~l~gk~~lVTGa~~s~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~d~~ 82 (315)
T 2o2s_A 6 DLRGQTAFVAGVADSHGYGWAIAKHLASAGA-RVALGTWPPVLGLFQKSLQSGRLDED-RKLPD-GSLIEFAGVYPLDAA 82 (315)
T ss_dssp CCTTCEEEEECCSSSSSHHHHHHHHHHTTTC-EEEEEECHHHHHHHHHHHHHTTTHHH-HBCTT-SCBCCCSCEEECCTT
T ss_pred cCCCCEEEEeCCCCCCChHHHHHHHHHHCCC-EEEEEecccccchhhhhhhhhhhhhh-hhhhc-ccccccccccccccc
Confidence 478999999999 89999999999999996 8988887531 11111 22221 111 2344443
Q ss_pred ----------CC--------CHHHHHHHHHHHHHcCCCCcEEEEccccCC-CCCCCCCCCHHHHHHHHhhhhHHHHHHHH
Q 018819 145 ----------LA--------SLDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFLLSR 205 (350)
Q Consensus 145 ----------vs--------~~~~v~~~~~~~~~~~g~id~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~~n~~g~~~l~~ 205 (350)
++ |+++++++++++.+.+|++|+||||||+.. ...++.+.+.++|++++++|+.|++++++
T Consensus 83 ~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~ 162 (315)
T 2o2s_A 83 FDKPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQ 162 (315)
T ss_dssp CSSTTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHH
T ss_pred ccccchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHH
Confidence 33 356899999999999999999999999753 23567788999999999999999999999
Q ss_pred HHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCch-hchhhhHHHHHHH
Q 018819 206 LLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGA-KAYKDSKVCNMLT 284 (350)
Q Consensus 206 ~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~asKaa~~~~ 284 (350)
+++|.|.+ +|+||++||.++..+ .++. ..|++||++++.|
T Consensus 163 ~~~~~m~~----~g~Iv~isS~~~~~~-----------------------------------~~~~~~~Y~asKaal~~l 203 (315)
T 2o2s_A 163 HFGPIMNE----GGSAVTLSYLAAERV-----------------------------------VPGYGGGMSSAKAALESD 203 (315)
T ss_dssp HHSTTEEE----EEEEEEEEEGGGTSC-----------------------------------CTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHhc----CCEEEEEeccccccc-----------------------------------CCCccHHHHHHHHHHHHH
Confidence 99999876 269999999988653 2444 4899999999999
Q ss_pred HHHHHHhhcCCCCcEEEEeeCCcccCCcccccc---hh-hHHhhhhhhH-HhhhcCccchhhhhhhcccc
Q 018819 285 MQEFHRRFHEETGIAFASLYPGCIATTGLFREH---IP-LFRLLFPPFQ-KYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 285 ~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~---~~-~~~~~~~~~~-~~~~~~~~s~~~~a~~i~~~ 349 (350)
+++++.|+..++||+||+|+||+|+|++..... .+ +.......+. .....++.+|+|+|+.+++|
T Consensus 204 ~~~la~el~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L 273 (315)
T 2o2s_A 204 TRTLAWEAGQKYGVRVNAISAGPLKSRAASAIGKSGEKSFIDYAIDYSYNNAPLRRDLHSDDVGGAALFL 273 (315)
T ss_dssp HHHHHHHHHHHTCCEEEEEEECCCCCHHHHHTTCSSSSCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCcccCeEEEEEecccccchhhhhccccccchhHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Confidence 999999983237999999999999998642110 00 0000000011 11234578999999988764
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=267.23 Aligned_cols=215 Identities=14% Similarity=0.123 Sum_probs=173.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEE-ecCh-------------hHHHHHHHHhccCCCceEEEEccCCCHH
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMA-CRDF-------------LKAERAAKSAGMAKENYTIMHLDLASLD 149 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~-~r~~-------------~~~~~~~~~l~~~~~~v~~~~~Dvs~~~ 149 (350)
-++++||||||++|||+++|++|+++|+.+|+++ +|+. +..+++.+++...|.++.++.||++|.+
T Consensus 249 ~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd~~ 328 (525)
T 3qp9_A 249 QADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTDAE 328 (525)
T ss_dssp CTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTSHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCCHH
Confidence 3689999999999999999999999998778888 8983 4456667777777889999999999999
Q ss_pred HHHHHHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCC
Q 018819 150 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229 (350)
Q Consensus 150 ~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~ 229 (350)
+++++++++. ++++||+||||||+... ..+.+.+.++|++++++|+.|++++++++.+.+.+++. .++||++||+++
T Consensus 329 ~v~~~~~~i~-~~g~id~vVh~AGv~~~-~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~-~~~iV~~SS~a~ 405 (525)
T 3qp9_A 329 AAARLLAGVS-DAHPLSAVLHLPPTVDS-EPLAATDADALARVVTAKATAALHLDRLLREAAAAGGR-PPVLVLFSSVAA 405 (525)
T ss_dssp HHHHHHHTSC-TTSCEEEEEECCCCCCC-CCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----C-CCEEEEEEEGGG
T ss_pred HHHHHHHHHH-hcCCCcEEEECCcCCCC-CchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCC-CCEEEEECCHHH
Confidence 9999999988 78999999999999755 78889999999999999999999999999998866431 269999999999
Q ss_pred CCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCccc
Q 018819 230 NTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA 309 (350)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~ 309 (350)
..+. +++..|+++|+++++|+ .++ ...||++++|+||+++
T Consensus 406 ~~g~-----------------------------------~g~~~YaaaKa~l~~lA----~~~-~~~gi~v~sI~pG~~~ 445 (525)
T 3qp9_A 406 IWGG-----------------------------------AGQGAYAAGTAFLDALA----GQH-RADGPTVTSVAWSPWE 445 (525)
T ss_dssp TTCC-----------------------------------TTCHHHHHHHHHHHHHH----TSC-CSSCCEEEEEEECCBT
T ss_pred cCCC-----------------------------------CCCHHHHHHHHHHHHHH----HHH-HhCCCCEEEEECCccc
Confidence 8753 68899999999988874 455 5569999999999999
Q ss_pred CCcccccchhhHHhhhhhhHHhhhcCccchhhhhhhccc
Q 018819 310 TTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 310 t~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
|+|....... ..........++|+++++.+.+
T Consensus 446 tgm~~~~~~~-------~~~~~~g~~~l~pee~a~~l~~ 477 (525)
T 3qp9_A 446 GSRVTEGATG-------ERLRRLGLRPLAPATALTALDT 477 (525)
T ss_dssp TSGGGSSHHH-------HHHHHTTBCCBCHHHHHHHHHH
T ss_pred cccccchhhH-------HHHHhcCCCCCCHHHHHHHHHH
Confidence 9876321110 1111122345789998887654
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=249.69 Aligned_cols=226 Identities=15% Similarity=0.150 Sum_probs=165.7
Q ss_pred cccCCCEEEEEcCC--CchHHHHHHHHHHcCCcEEEEEecChhHH-----------HHHHHHhccCC--CceEEEEcc--
Q 018819 82 KTLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKA-----------ERAAKSAGMAK--ENYTIMHLD-- 144 (350)
Q Consensus 82 ~~l~~~~~lItGgs--~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~-----------~~~~~~l~~~~--~~v~~~~~D-- 144 (350)
+++++|++|||||+ +|||+++|+.|+++|+ +|++++|+.... ++. +++...+ .....+.+|
T Consensus 4 ~~l~~k~~lVTGas~~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 81 (297)
T 1d7o_A 4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGA-EILVGTWVPALNIFETSLRRGKFDQS-RVLPDGSLMEIKKVYPLDAV 81 (297)
T ss_dssp CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTC-EEEEEEEHHHHHHHHHHHHTTTTTGG-GBCTTSSBCCEEEEEEECTT
T ss_pred cccCCCEEEEECCCCCCChHHHHHHHHHHCCC-eEEEeeccccchhhhhhhhhhHhhhh-hhhcccccccccccccccee
Confidence 45789999999999 9999999999999996 898888753211 111 1111100 012333443
Q ss_pred ------CC----C--------HHHHHHHHHHHHHcCCCCcEEEEccccCC-CCCCCCCCCHHHHHHHHhhhhHHHHHHHH
Q 018819 145 ------LA----S--------LDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFLLSR 205 (350)
Q Consensus 145 ------vs----~--------~~~v~~~~~~~~~~~g~id~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~~n~~g~~~l~~ 205 (350)
++ | +++++++++++.+.++++|+||||||+.. ...++.+.+.++|++++++|+.|++++++
T Consensus 82 ~~~~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~ 161 (297)
T 1d7o_A 82 FDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLS 161 (297)
T ss_dssp CCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHH
T ss_pred ccchhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHH
Confidence 33 2 56899999999999999999999999743 23567788999999999999999999999
Q ss_pred HHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCch-hchhhhHHHHHHH
Q 018819 206 LLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGA-KAYKDSKVCNMLT 284 (350)
Q Consensus 206 ~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~asKaa~~~~ 284 (350)
+++|.|.+ +|+||++||.++..+ .++. ..|++||++++.+
T Consensus 162 ~~~~~m~~----~g~iv~isS~~~~~~-----------------------------------~~~~~~~Y~asKaa~~~~ 202 (297)
T 1d7o_A 162 HFLPIMNP----GGASISLTYIASERI-----------------------------------IPGYGGGMSSAKAALESD 202 (297)
T ss_dssp HHGGGEEE----EEEEEEEECGGGTSC-----------------------------------CTTCTTTHHHHHHHHHHH
T ss_pred HHHHHhcc----CceEEEEeccccccC-----------------------------------CCCcchHHHHHHHHHHHH
Confidence 99999875 269999999988653 2454 5899999999999
Q ss_pred HHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 285 MQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 285 ~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
++.++.|+..++||+||+|+||+|+|++......+ ..............++.+|+|+|+.++++
T Consensus 203 ~~~la~e~~~~~gi~vn~v~PG~v~T~~~~~~~~~-~~~~~~~~~~~p~~r~~~pedvA~~v~~l 266 (297)
T 1d7o_A 203 TRVLAFEAGRKQNIRVNTISAGPLGSRAAKAIGFI-DTMIEYSYNNAPIQKTLTADEVGNAAAFL 266 (297)
T ss_dssp HHHHHHHHHHHHCCEEEEEEECCCBCCCSSCCSHH-HHHHHHHHHHSSSCCCBCHHHHHHHHHHH
T ss_pred HHHHHHHhCcccCcEEEEEeccccccchhhhcccc-HHHHHHhhccCCCCCCCCHHHHHHHHHHH
Confidence 99999998323699999999999999975431110 01100011112234567999999988764
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.6e-32 Score=280.60 Aligned_cols=208 Identities=19% Similarity=0.240 Sum_probs=178.5
Q ss_pred ccchHHHHHHhhcccCCceecccccCCCCccccCCCcCccccCCCEEEEEcCCCchHHHHHHHHH-HcCCcEEEEEecC-
Q 018819 43 FSSSALRCKREFSQRNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALA-ETGKWHIIMACRD- 120 (350)
Q Consensus 43 ~~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lItGgs~gIG~~ia~~la-~~Ga~~Vi~~~r~- 120 (350)
...+||+.+++..+.||+++.... ..-++++||||||++|||+++|++|+ ++|+++|++++|+
T Consensus 502 ~~~eA~~~l~~g~~~GKvVl~~~~---------------~~~~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~ 566 (795)
T 3slk_A 502 QAPEALRHLSQARHVGKLVLTMPP---------------VWDAAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRG 566 (795)
T ss_dssp GHHHHHHHHHHTCCCBEEEEECCC---------------CCCTTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSG
T ss_pred HHHHHHHHHhcCCccceEEEecCc---------------ccccccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCc
Confidence 347899999999999999887421 02368899999999999999999999 7998789999998
Q ss_pred --hhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhH
Q 018819 121 --FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHL 198 (350)
Q Consensus 121 --~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~ 198 (350)
.+..++..++++..|.++.++.||++|.++++++++++.+.+ +||+||||||+..+ ..+.+++.++|++++++|+.
T Consensus 567 ~~~~~~~~~~~~l~~~G~~v~~~~~Dvsd~~~v~~~~~~~~~~~-~id~lVnnAGv~~~-~~~~~~t~e~~~~~~~~nv~ 644 (795)
T 3slk_A 567 PAASGAAELVAQLTAYGAEVSLQACDVADRETLAKVLASIPDEH-PLTAVVHAAGVLDD-GVSESLTVERLDQVLRPKVD 644 (795)
T ss_dssp GGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTTS-CEEEEEECCCCCCC-CCGGGCCHHHHHHHHCCCCC
T ss_pred cchHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHhC-CCEEEEECCCcCCC-CchhhCCHHHHHHHHHHHHH
Confidence 455677778887788899999999999999999999988776 99999999999765 78889999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhH
Q 018819 199 GHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSK 278 (350)
Q Consensus 199 g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK 278 (350)
|++++++++.|.| +||++||+++..+. +++..|+++|
T Consensus 645 G~~~l~~~~~~~l--------~iV~~SS~ag~~g~-----------------------------------~g~~~YaAak 681 (795)
T 3slk_A 645 GARNLLELIDPDV--------ALVLFSSVSGVLGS-----------------------------------GGQGNYAAAN 681 (795)
T ss_dssp HHHHHHHHSCTTS--------EEEEEEETHHHHTC-----------------------------------SSCHHHHHHH
T ss_pred HHHHHHHHHhhCC--------EEEEEccHHhcCCC-----------------------------------CCCHHHHHHH
Confidence 9999999986655 79999999998753 7899999999
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccc
Q 018819 279 VCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 315 (350)
Q Consensus 279 aa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~ 315 (350)
++++ .+++++ .+.||++|+|+||++.|+++..
T Consensus 682 a~~~----alA~~~-~~~Gi~v~sI~pG~v~t~g~~~ 713 (795)
T 3slk_A 682 SFLD----ALAQQR-QSRGLPTRSLAWGPWAEHGMAS 713 (795)
T ss_dssp HHHH----HHHHHH-HHTTCCEEEEEECCCSCCCHHH
T ss_pred HHHH----HHHHHH-HHcCCeEEEEECCeECcchhhc
Confidence 7554 455555 3459999999999999987643
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=6.2e-32 Score=255.63 Aligned_cols=223 Identities=16% Similarity=0.035 Sum_probs=169.8
Q ss_pred cCCCEEEEEcCCCchHHH--HHHHHHHcCCcEEEEEecChhH------------HHHHHHHhccCCCceEEEEccCCCHH
Q 018819 84 LRKGSVIITGASSGLGLA--TAKALAETGKWHIIMACRDFLK------------AERAAKSAGMAKENYTIMHLDLASLD 149 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~--ia~~la~~Ga~~Vi~~~r~~~~------------~~~~~~~l~~~~~~v~~~~~Dvs~~~ 149 (350)
..+|++|||||++|||++ +++.|+++|+ +|++++|+... .+.+.+.+...+.++.++.||++|++
T Consensus 58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd~~ 136 (418)
T 4eue_A 58 RGPKKVLIVGASSGFGLATRISVAFGGPEA-HTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFSNE 136 (418)
T ss_dssp CCCSEEEEESCSSHHHHHHHHHHHHSSSCC-EEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTCHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHHhCCC-EEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCCHH
Confidence 478999999999999999 9999999996 89888886432 23444444555778999999999999
Q ss_pred HHHHHHHHHHHcCCCCcEEEEccccCC------------CCCCC---------------------CCCCHHHHHHHHhhh
Q 018819 150 SVRQFVDTFRRSGRPLDVLVCNAAVYL------------PTAKE---------------------PTFTAEGFELSVGTN 196 (350)
Q Consensus 150 ~v~~~~~~~~~~~g~id~lv~~Ag~~~------------~~~~~---------------------~~~~~~~~~~~~~~n 196 (350)
+++++++++.+.+|+||+||||||... ...++ .+.+.++|+.++++|
T Consensus 137 ~v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~vn 216 (418)
T 4eue_A 137 TKDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKVM 216 (418)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHh
Confidence 999999999999999999999999741 11223 356999999999999
Q ss_pred hHHHH-HHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCch--hc
Q 018819 197 HLGHF-LLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGA--KA 273 (350)
Q Consensus 197 ~~g~~-~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 273 (350)
..+.| .+++.+.+.+...+ +|+||++||+.+..+ .+.+ ..
T Consensus 217 ~~~~~~~~~~~l~~~~~~~~--gg~IV~iSSi~~~~~-----------------------------------~p~~~~~a 259 (418)
T 4eue_A 217 GGEDWQEWCEELLYEDCFSD--KATTIAYSYIGSPRT-----------------------------------YKIYREGT 259 (418)
T ss_dssp SSHHHHHHHHHHHHTTCEEE--EEEEEEEECCCCGGG-----------------------------------TTTTTTSH
T ss_pred hHHHHHHHHHHHHHHhhhcC--CcEEEEEeCchhcCC-----------------------------------CCccccHH
Confidence 99998 77777776543332 479999999988753 2445 89
Q ss_pred hhhhHHHHHHHHHHHHHhhcCC-CCcEEEEeeCCcccCCcccccchhhHHhhhhhhHHhhhcCccchhhhhhhccc
Q 018819 274 YKDSKVCNMLTMQEFHRRFHEE-TGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 274 Y~asKaa~~~~~~~la~e~~~~-~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
|++||+|+.+++++|+.|+ ++ .||+||+|+||+|+|++...- |........+.+ ..+..-++|++++.+.+
T Consensus 260 Y~ASKaAL~~ltrsLA~EL-a~~~GIrVN~V~PG~v~T~~s~~i--p~~p~y~~~~~~-~mk~~G~~E~v~e~~~~ 331 (418)
T 4eue_A 260 IGIAKKDLEDKAKLINEKL-NRVIGGRAFVSVNKALVTKASAYI--PTFPLYAAILYK-VMKEKNIHENCIMQIER 331 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHSCEEEEEECCCCCCHHHHTS--TTHHHHHHHHHH-HHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh-CCccCeEEEEEECCcCcChhhhcC--CCCcHHHHHHHH-HHhhcCChHHHHHHHHH
Confidence 9999999999999999999 66 799999999999999865321 211111111111 12334577777776654
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=7.4e-31 Score=232.30 Aligned_cols=209 Identities=22% Similarity=0.192 Sum_probs=165.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
+|++|||||++|||++++++|+++|+ +|++++|+.+ . .++.++.+|++|+++++++++++ +.++++
T Consensus 2 ~k~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~-~-----------~~~~~~~~D~~~~~~~~~~~~~~-~~~~~~ 67 (242)
T 1uay_A 2 ERSALVTGGASGLGRAAALALKARGY-RVVVLDLRRE-G-----------EDLIYVEGDVTREEDVRRAVARA-QEEAPL 67 (242)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCC-S-----------SSSEEEECCTTCHHHHHHHHHHH-HHHSCE
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEccCcc-c-----------cceEEEeCCCCCHHHHHHHHHHH-HhhCCc
Confidence 57999999999999999999999995 8999999754 1 24578999999999999999999 778899
Q ss_pred cEEEEccccCCCCCCCCCC----CHHHHHHHHhhhhHHHHHHHHHHHHHHhcCC---C-CCCeEEEEeccCCCCCCCCCC
Q 018819 166 DVLVCNAAVYLPTAKEPTF----TAEGFELSVGTNHLGHFLLSRLLLDDLKQSD---Y-PSKRLIIVGSITGNTNTLAGN 237 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~----~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~---~-~~g~iV~vSS~~~~~~~~~~~ 237 (350)
|++|||||.... ..+.+. +.++|++.+++|+.+++++++++.+.|.+++ . ..|+||++||..+..+
T Consensus 68 d~li~~ag~~~~-~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~----- 141 (242)
T 1uay_A 68 FAVVSAAGVGLA-EKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEG----- 141 (242)
T ss_dssp EEEEECCCCCCC-CCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHC-----
T ss_pred eEEEEcccccCc-ccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccC-----
Confidence 999999998644 444443 3459999999999999999999999998653 1 1249999999987643
Q ss_pred CCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccc
Q 018819 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317 (350)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~ 317 (350)
.++...|++||++++.+++.++.|+ .+.||++++|+||+|+|++....
T Consensus 142 ------------------------------~~~~~~Y~~sK~a~~~~~~~l~~e~-~~~gi~v~~v~Pg~v~t~~~~~~- 189 (242)
T 1uay_A 142 ------------------------------QIGQAAYAASKGGVVALTLPAAREL-AGWGIRVVTVAPGLFDTPLLQGL- 189 (242)
T ss_dssp ------------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSCSSHHHHTS-
T ss_pred ------------------------------CCCCchhhHHHHHHHHHHHHHHHHH-hhcCcEEEEEEeccCcchhhhcc-
Confidence 2567899999999999999999999 56799999999999999865321
Q ss_pred hhhHHhhhhhhHH-hhh-cCccchhhhhhhcccc
Q 018819 318 IPLFRLLFPPFQK-YIT-KGYVSEDEAGKRLAQV 349 (350)
Q Consensus 318 ~~~~~~~~~~~~~-~~~-~~~~s~~~~a~~i~~~ 349 (350)
.+. . ...+.. ... ..+.+|+|+|+.++++
T Consensus 190 ~~~--~-~~~~~~~~~~~~~~~~~~dva~~~~~l 220 (242)
T 1uay_A 190 PEK--A-KASLAAQVPFPPRLGRPEEYAALVLHI 220 (242)
T ss_dssp CHH--H-HHHHHTTCCSSCSCCCHHHHHHHHHHH
T ss_pred chh--H-HHHHHhhCCCcccCCCHHHHHHHHHHH
Confidence 110 0 011111 111 4567999999987653
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-31 Score=255.86 Aligned_cols=182 Identities=19% Similarity=0.214 Sum_probs=157.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh---hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDF---LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~---~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
+++||||||++|||+++|++|+++|+.+|++++|+. +..+++.+++...|.++.++.||++|.++++++++++.+.
T Consensus 239 ~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~~- 317 (496)
T 3mje_A 239 HGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPED- 317 (496)
T ss_dssp CSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCTT-
T ss_pred CCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHh-
Confidence 589999999999999999999999977999999964 3456677777777889999999999999999999998776
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
++||+||||||+......+.+.+.++|++++++|+.|++++++.+.+.+ .++||++||+++..+.
T Consensus 318 g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~------~~~iV~~SS~a~~~g~--------- 382 (496)
T 3mje_A 318 APLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLD------LDAFVLFSSGAAVWGS--------- 382 (496)
T ss_dssp SCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSC------CSEEEEEEEHHHHTTC---------
T ss_pred CCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccC------CCEEEEEeChHhcCCC---------
Confidence 6899999999997445788899999999999999999999999876542 3699999999988653
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccc
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~ 314 (350)
+++..|+++|++++.|++.++ ..||++++|+||.+.|+++.
T Consensus 383 --------------------------~g~~~YaAaKa~ldala~~~~-----~~Gi~v~sV~pG~w~~~gm~ 423 (496)
T 3mje_A 383 --------------------------GGQPGYAAANAYLDALAEHRR-----SLGLTASSVAWGTWGEVGMA 423 (496)
T ss_dssp --------------------------TTCHHHHHHHHHHHHHHHHHH-----HTTCCCEEEEECEESSSCC-
T ss_pred --------------------------CCcHHHHHHHHHHHHHHHHHH-----hcCCeEEEEECCcccCCccc
Confidence 688999999999999887544 34999999999999887664
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-31 Score=238.16 Aligned_cols=227 Identities=19% Similarity=0.212 Sum_probs=149.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
|++|||||++|||+++|+.|+++|+ +|++++|+.++.+. . +.+|++|.++++++++++ .+++|
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~------------~-~~~Dl~~~~~v~~~~~~~---~~~id 64 (257)
T 1fjh_A 2 SIIVISGCATGIGAATRKVLEAAGH-QIVGIDIRDAEVIA------------D-LSTAEGRKQAIADVLAKC---SKGMD 64 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSSSEEC------------C-TTSHHHHHHHHHHHHTTC---TTCCS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCchhhcc------------c-cccCCCCHHHHHHHHHHh---CCCCC
Confidence 5899999999999999999999995 89999998643211 1 679999999998887743 37999
Q ss_pred EEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccc
Q 018819 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (350)
Q Consensus 167 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (350)
+||||||+.... +.|+.++++|+.|+++++++++|.|.+++ .|+||++||..+..+.... + ....
T Consensus 65 ~lv~~Ag~~~~~--------~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~~~~~~--~---~~~~ 129 (257)
T 1fjh_A 65 GLVLCAGLGPQT--------KVLGNVVSVNYFGATELMDAFLPALKKGH--QPAAVVISSVASAHLAFDK--N---PLAL 129 (257)
T ss_dssp EEEECCCCCTTC--------SSHHHHHHHHTHHHHHHHHHHHHHHHTSS--SCEEEEECCGGGGSSCGGG--C---TTHH
T ss_pred EEEECCCCCCCc--------ccHHHHHHHhhHHHHHHHHHHHHHHhhcC--CcEEEEECChhhhcccccc--c---hhhh
Confidence 999999985311 23899999999999999999999998765 4799999999876321000 0 0000
Q ss_pred cccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccccc-chhhHHhhh
Q 018819 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE-HIPLFRLLF 325 (350)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~-~~~~~~~~~ 325 (350)
... ..+.... .....+..+.++...|++||++++.+++.++.|+ .++||+|++|+||+|+|++.... ..+......
T Consensus 130 ~~~-~~~~~~~-~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~ 206 (257)
T 1fjh_A 130 ALE-AGEEAKA-RAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAW-GEAGVRLNTIAPGATETPLLQAGLQDPRYGESI 206 (257)
T ss_dssp HHH-HTCHHHH-HHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHH-HHTTCEEEEEEECC-------------------
T ss_pred hhc-ccchhhh-hhhhhcccCCCCccHHHHHHHHHHHHHHHHHHHH-hhcCeEEEEEeeCCCCCccchhhccchhHHHHH
Confidence 000 0000000 0000000123577899999999999999999998 56799999999999999875321 111100000
Q ss_pred hhhHHhhhcCccchhhhhhhcccc
Q 018819 326 PPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 326 ~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..+ .....++.+|+|+|+.++++
T Consensus 207 ~~~-~~~~~~~~~~~dvA~~~~~l 229 (257)
T 1fjh_A 207 AKF-VPPMGRRAEPSEMASVIAFL 229 (257)
T ss_dssp --C-CCSTTSCCCTHHHHHHHHHH
T ss_pred Hhc-ccccCCCCCHHHHHHHHHHH
Confidence 000 11223578999999988753
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-30 Score=223.49 Aligned_cols=194 Identities=21% Similarity=0.241 Sum_probs=158.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
|++|||||+||||++++++|+++ +|++++|+.+..++..+++.. .++.+|++|++++++++++ ++++|
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~---~V~~~~r~~~~~~~~~~~~~~-----~~~~~D~~~~~~~~~~~~~----~~~id 68 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH---DLLLSGRRAGALAELAREVGA-----RALPADLADELEAKALLEE----AGPLD 68 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS---EEEEECSCHHHHHHHHHHHTC-----EECCCCTTSHHHHHHHHHH----HCSEE
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC---CEEEEECCHHHHHHHHHhccC-----cEEEeeCCCHHHHHHHHHh----cCCCC
Confidence 57999999999999999999998 899999998877777666642 7889999999999999887 57899
Q ss_pred EEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccc
Q 018819 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (350)
Q Consensus 167 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (350)
+||||||.... .++.+.+.++|++.+++|+.+++++++++ .+.+ .++||++||..+..+
T Consensus 69 ~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~--~~~iv~~sS~~~~~~-------------- 127 (207)
T 2yut_A 69 LLVHAVGKAGR-ASVREAGRDLVEEMLAAHLLTAAFVLKHA----RFQK--GARAVFFGAYPRYVQ-------------- 127 (207)
T ss_dssp EEEECCCCCCC-BCSCC---CHHHHHHHHHHHHHHHHHHHC----CEEE--EEEEEEECCCHHHHS--------------
T ss_pred EEEECCCcCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHH----HhcC--CcEEEEEcChhhccC--------------
Confidence 99999998643 66778889999999999999999999987 2222 369999999887642
Q ss_pred cccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhhhh
Q 018819 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFP 326 (350)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~ 326 (350)
.++...|++||++++.+++.++.++ .+.||++++|+||++.|++......+
T Consensus 128 ---------------------~~~~~~Y~~sK~a~~~~~~~~~~~~-~~~gi~v~~v~pg~v~t~~~~~~~~~------- 178 (207)
T 2yut_A 128 ---------------------VPGFAAYAAAKGALEAYLEAARKEL-LREGVHLVLVRLPAVATGLWAPLGGP------- 178 (207)
T ss_dssp ---------------------STTBHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEECCCCBCSGGGGGGTSC-------
T ss_pred ---------------------CCCcchHHHHHHHHHHHHHHHHHHH-hhhCCEEEEEecCcccCCCccccCCC-------
Confidence 3567899999999999999999998 56799999999999999864221111
Q ss_pred hhHHhhhcCccchhhhhhhccc
Q 018819 327 PFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 327 ~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
...+.+++|+|+.+++
T Consensus 179 ------~~~~~~~~dva~~~~~ 194 (207)
T 2yut_A 179 ------PKGALSPEEAARKVLE 194 (207)
T ss_dssp ------CTTCBCHHHHHHHHHH
T ss_pred ------CCCCCCHHHHHHHHHH
Confidence 1446899999988765
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=271.05 Aligned_cols=219 Identities=15% Similarity=0.143 Sum_probs=172.2
Q ss_pred cccCCCEEEEEcCCCc-hHHHHHHHHHHcCCcEEEEE-ecChhHHHHHHHHh----ccCCCceEEEEccCCCHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSG-LGLATAKALAETGKWHIIMA-CRDFLKAERAAKSA----GMAKENYTIMHLDLASLDSVRQFV 155 (350)
Q Consensus 82 ~~l~~~~~lItGgs~g-IG~~ia~~la~~Ga~~Vi~~-~r~~~~~~~~~~~l----~~~~~~v~~~~~Dvs~~~~v~~~~ 155 (350)
+.+++|++|||||++| ||+++|+.|+++|+ +|+++ +|+.+..++..+++ ...+.++.++.||++|.+++++++
T Consensus 671 m~l~gKvaLVTGASsGgIG~aIA~~La~~GA-~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~alv 749 (1887)
T 2uv8_A 671 VTFKDKYVLITGAGKGSIGAEVLQGLLQGGA-KVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALI 749 (1887)
T ss_dssp BCCTTCEEEEESCCSSSHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHH
T ss_pred CCCCCCEEEEECCCCcHHHHHHHHHHHHCCC-EEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHH
Confidence 3578999999999998 99999999999996 78777 67776665554444 334678999999999999999999
Q ss_pred HHHHHc-----CC-CCcEEEEccccCCCCC-CCCCCC--HHHHHHHHhhhhHHHHHHHHHH--HHHHhcCCCCCCeEEEE
Q 018819 156 DTFRRS-----GR-PLDVLVCNAAVYLPTA-KEPTFT--AEGFELSVGTNHLGHFLLSRLL--LDDLKQSDYPSKRLIIV 224 (350)
Q Consensus 156 ~~~~~~-----~g-~id~lv~~Ag~~~~~~-~~~~~~--~~~~~~~~~~n~~g~~~l~~~~--~~~~~~~~~~~g~iV~v 224 (350)
+++.+. +| +||+||||||+... . ++.+.+ .++|+++|++|+.+++++++.+ .|.|.+++ .|+||++
T Consensus 750 ~~i~~~~~~~G~G~~LDiLVNNAGi~~~-~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~--~G~IVnI 826 (1887)
T 2uv8_A 750 EFIYDTEKNGGLGWDLDAIIPFAAIPEQ-GIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRP--AQVILPM 826 (1887)
T ss_dssp HHHHSCTTTTSCCCCCSEEEECCCCCCC-SBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCC--EEEEEEE
T ss_pred HHHHHhccccccCCCCeEEEECCCcCCC-CCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCC--CCEEEEE
Confidence 999988 66 99999999998654 4 677888 8999999999999999999998 67776654 4799999
Q ss_pred eccCCCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHH-HHHHHHhhcCCCCcEEEEe
Q 018819 225 GSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLT-MQEFHRRFHEETGIAFASL 303 (350)
Q Consensus 225 SS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~-~~~la~e~~~~~gi~v~~v 303 (350)
||.++.. ++...|++||+++++| ++.++.++ .+. |+||+|
T Consensus 827 SS~ag~~-------------------------------------gg~~aYaASKAAL~~Lttr~lA~el-a~~-IrVNaV 867 (1887)
T 2uv8_A 827 SPNHGTF-------------------------------------GGDGMYSESKLSLETLFNRWHSESW-ANQ-LTVCGA 867 (1887)
T ss_dssp CSCTTCS-------------------------------------SCBTTHHHHHHHGGGHHHHHHHSSC-TTT-EEEEEE
T ss_pred cChHhcc-------------------------------------CCCchHHHHHHHHHHHHHHHHHHHh-CCC-eEEEEE
Confidence 9998874 2456899999999999 88888888 454 999999
Q ss_pred eCCccc-CCcccccchhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 304 YPGCIA-TTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 304 ~PG~v~-t~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
+||+|+ |+++.... .... .......+..+|+|+|+.+++|
T Consensus 868 ~PG~V~tT~m~~~~~-~~~~-----~~~~~plr~~sPEEVA~avlfL 908 (1887)
T 2uv8_A 868 IIGWTRGTGLMSANN-IIAE-----GIEKMGVRTFSQKEMAFNLLGL 908 (1887)
T ss_dssp EECCEECC-----CC-TTHH-----HHHTTSCCCEEHHHHHHHHHGG
T ss_pred Eecccccccccccch-hHHH-----HHHhcCCCCCCHHHHHHHHHHH
Confidence 999999 66543211 1100 1111112456899999888765
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=269.02 Aligned_cols=221 Identities=15% Similarity=0.121 Sum_probs=173.2
Q ss_pred cccCCCEEEEEcCCCc-hHHHHHHHHHHcCCcEEEEE-ecChhHHHHHH----HHhccCCCceEEEEccCCCHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSG-LGLATAKALAETGKWHIIMA-CRDFLKAERAA----KSAGMAKENYTIMHLDLASLDSVRQFV 155 (350)
Q Consensus 82 ~~l~~~~~lItGgs~g-IG~~ia~~la~~Ga~~Vi~~-~r~~~~~~~~~----~~l~~~~~~v~~~~~Dvs~~~~v~~~~ 155 (350)
+.+++|++|||||++| ||+++|++|+++|+ +|+++ .|+.+..++.. +++...+.++.++.||++|.+++++++
T Consensus 648 m~L~gKvaLVTGASgGgIG~aIAr~LA~~GA-~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~alv 726 (1878)
T 2uv9_A 648 LTFQGKHALMTGAGAGSIGAEVLQGLLSGGA-KVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEALV 726 (1878)
T ss_dssp BCCTTCEEEEESCCTTSHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHH
T ss_pred CCCCCCEEEEECCCCcHHHHHHHHHHHHCCC-EEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHH
Confidence 3578999999999999 99999999999996 78887 46665554443 344445678999999999999999999
Q ss_pred HHHHHc---CC-CCcEEEEccccCCCCCCCCCCC--HHHHHHHHhhhhHHHHHHHHH--HHHHHhcCCCCCCeEEEEecc
Q 018819 156 DTFRRS---GR-PLDVLVCNAAVYLPTAKEPTFT--AEGFELSVGTNHLGHFLLSRL--LLDDLKQSDYPSKRLIIVGSI 227 (350)
Q Consensus 156 ~~~~~~---~g-~id~lv~~Ag~~~~~~~~~~~~--~~~~~~~~~~n~~g~~~l~~~--~~~~~~~~~~~~g~iV~vSS~ 227 (350)
+++.+. +| +||+||||||+.....++.+.+ .++|+++|++|+.|++++++. +++.|.+++ .|+||++||+
T Consensus 727 ~~i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~--~G~IVnISS~ 804 (1878)
T 2uv9_A 727 NYIYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRP--AQVILPLSPN 804 (1878)
T ss_dssp HHHHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCC--EEECCEECSC
T ss_pred HHHHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCC--CCEEEEEcch
Confidence 999988 88 9999999999865422778888 899999999999999999987 667776653 4799999999
Q ss_pred CCCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCc
Q 018819 228 TGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGC 307 (350)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~ 307 (350)
++..+ ++..|++||+++++|++.++.+...+. |+||+|+||+
T Consensus 805 ag~~g-------------------------------------g~~aYaASKAAL~aLt~~laAeEla~~-IrVNaVaPG~ 846 (1878)
T 2uv9_A 805 HGTFG-------------------------------------NDGLYSESKLALETLFNRWYSESWGNY-LTICGAVIGW 846 (1878)
T ss_dssp SSSSS-------------------------------------CCSSHHHHHHHHTTHHHHHHHSTTTTT-EEEEEEEECC
T ss_pred hhccC-------------------------------------CchHHHHHHHHHHHHHHHHHHHHcCCC-eEEEEEEecc
Confidence 88742 456899999999999987766532554 9999999999
Q ss_pred cc-CCcccccchhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 308 IA-TTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 308 v~-t~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
|+ |++.... .. . .........+..+|+|+|+.+++|
T Consensus 847 V~gT~m~~~~--~~---~-~~~~~~~plr~~sPeEVA~avlfL 883 (1878)
T 2uv9_A 847 TRGTGLMSAN--NL---V-AEGVEKLGVRTFSQQEMAFNLLGL 883 (1878)
T ss_dssp BCCTTSCSHH--HH---T-HHHHHTTTCCCBCHHHHHHHHHHH
T ss_pred eecCcccccc--hh---h-HHHHHhcCCCCCCHHHHHHHHHHH
Confidence 99 9875321 00 0 011111122456899999887654
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-30 Score=268.59 Aligned_cols=219 Identities=15% Similarity=0.126 Sum_probs=171.8
Q ss_pred cccCCCEEEEEcCCCc-hHHHHHHHHHHcCCcEEEEE-ecChhHHHHHHHHhc----cCCCceEEEEccCCCHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSG-LGLATAKALAETGKWHIIMA-CRDFLKAERAAKSAG----MAKENYTIMHLDLASLDSVRQFV 155 (350)
Q Consensus 82 ~~l~~~~~lItGgs~g-IG~~ia~~la~~Ga~~Vi~~-~r~~~~~~~~~~~l~----~~~~~v~~~~~Dvs~~~~v~~~~ 155 (350)
+.+++|++|||||++| ||+++|++|+++|+ +|+++ +|+.+..++..+++. ..+.++.++.||++|.+++++++
T Consensus 472 msL~GKvALVTGASgGGIGrAIAr~LA~~GA-~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaLV 550 (1688)
T 2pff_A 472 VTFKDKYVLITGAGKGSIGAEVLQGLLQGGA-KVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALI 550 (1688)
T ss_dssp CCCCSCCEEECSCSSSSTHHHHHHHHHHHTC-EEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHHH
T ss_pred cccCCCEEEEECCChHHHHHHHHHHHHHCcC-EEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHHH
Confidence 4678999999999998 99999999999997 77776 677666555555552 23667899999999999999999
Q ss_pred HHHHHc-----CC-CCcEEEEccccCCCCC-CCCCCC--HHHHHHHHhhhhHHHHHHHHHH--HHHHhcCCCCCCeEEEE
Q 018819 156 DTFRRS-----GR-PLDVLVCNAAVYLPTA-KEPTFT--AEGFELSVGTNHLGHFLLSRLL--LDDLKQSDYPSKRLIIV 224 (350)
Q Consensus 156 ~~~~~~-----~g-~id~lv~~Ag~~~~~~-~~~~~~--~~~~~~~~~~n~~g~~~l~~~~--~~~~~~~~~~~g~iV~v 224 (350)
+++.+. +| +||+||||||+... . ++.+.+ .++|++++++|+.+++++++.+ .|.|.+++ .|+||++
T Consensus 551 e~I~e~~~~~GfG~~IDILVNNAGI~~~-g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krg--gGrIVnI 627 (1688)
T 2pff_A 551 EFIYDTEKNGGLGWDLDAIIPFAAIPEQ-GIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRP--AQVILPM 627 (1688)
T ss_dssp HHHHSCTTSSSCCCCCCEEECCCCCCCC-SBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSC--EEECCCC
T ss_pred HHHHHhccccccCCCCeEEEECCCcCCC-CCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCC--CCEEEEE
Confidence 999988 77 99999999998654 4 677888 8999999999999999999998 77777654 4799999
Q ss_pred eccCCCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHH-HHHHHHhhcCCCCcEEEEe
Q 018819 225 GSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLT-MQEFHRRFHEETGIAFASL 303 (350)
Q Consensus 225 SS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~-~~~la~e~~~~~gi~v~~v 303 (350)
||.++.. ++...|++||+++++| .+.++.++ .+. |+||+|
T Consensus 628 SSiAG~~-------------------------------------Gg~saYaASKAAL~aLttrsLAeEl-a~~-IRVNaV 668 (1688)
T 2pff_A 628 SPNHGTF-------------------------------------GGDGMYSESKLSLETLFNRWHSESW-ANQ-LTVCGA 668 (1688)
T ss_dssp CSCTTTS-------------------------------------SCBTTHHHHHHHHTHHHHHTTTSSC-TTT-EECCCC
T ss_pred EChHhcc-------------------------------------CCchHHHHHHHHHHHHHHHHHHHHc-CCC-eEEEEE
Confidence 9998874 2456899999999999 67777776 454 999999
Q ss_pred eCCccc-CCcccccchhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 304 YPGCIA-TTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 304 ~PG~v~-t~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
+||+|+ |++..... ... ........+..+|+|+|+.++++
T Consensus 669 aPG~V~TT~M~~~~e-~~~-----~~l~~iplR~~sPEEVA~aIlFL 709 (1688)
T 2pff_A 669 IIGWTRGTGLMSANN-IIA-----EGIEKMGVRTFSQKEMAFNLLGL 709 (1688)
T ss_dssp CCCCCCCCSSSCTTT-TCS-----TTTSSSSCCCCCCCTTHHHHHHH
T ss_pred EECcCcCCcccCCch-HHH-----HHHHhCCCCCCCHHHHHHHHHHH
Confidence 999999 66543210 000 00001111345888888887654
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-29 Score=215.92 Aligned_cols=184 Identities=15% Similarity=0.144 Sum_probs=153.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
++|||||+||||++++++|+ +| .+|++++|+.+ ++.+|++|+++++++++.+ +++|+
T Consensus 5 ~vlVtGasg~iG~~~~~~l~-~g-~~V~~~~r~~~-----------------~~~~D~~~~~~~~~~~~~~----~~~d~ 61 (202)
T 3d7l_A 5 KILLIGASGTLGSAVKERLE-KK-AEVITAGRHSG-----------------DVTVDITNIDSIKKMYEQV----GKVDA 61 (202)
T ss_dssp EEEEETTTSHHHHHHHHHHT-TT-SEEEEEESSSS-----------------SEECCTTCHHHHHHHHHHH----CCEEE
T ss_pred EEEEEcCCcHHHHHHHHHHH-CC-CeEEEEecCcc-----------------ceeeecCCHHHHHHHHHHh----CCCCE
Confidence 79999999999999999999 99 48999999753 4689999999999998875 68999
Q ss_pred EEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcccc
Q 018819 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (350)
Q Consensus 168 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (350)
||||||.... .++.+.+.++|++.+++|+.+++++++++.+.|.+ +++||++||..+..+
T Consensus 62 vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~----~~~iv~~sS~~~~~~--------------- 121 (202)
T 3d7l_A 62 IVSATGSATF-SPLTELTPEKNAVTISSKLGGQINLVLLGIDSLND----KGSFTLTTGIMMEDP--------------- 121 (202)
T ss_dssp EEECCCCCCC-CCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEE----EEEEEEECCGGGTSC---------------
T ss_pred EEECCCCCCC-CChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhcc----CCEEEEEcchhhcCC---------------
Confidence 9999998643 56777899999999999999999999999998865 269999999877642
Q ss_pred ccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhhhhh
Q 018819 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPP 327 (350)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~ 327 (350)
.++...|+++|++++.+++.++.|+ +.||++++|+||++.|++... ..
T Consensus 122 --------------------~~~~~~Y~~sK~~~~~~~~~~~~e~--~~gi~v~~v~pg~v~~~~~~~--------~~-- 169 (202)
T 3d7l_A 122 --------------------IVQGASAAMANGAVTAFAKSAAIEM--PRGIRINTVSPNVLEESWDKL--------EP-- 169 (202)
T ss_dssp --------------------CTTCHHHHHHHHHHHHHHHHHTTSC--STTCEEEEEEECCBGGGHHHH--------GG--
T ss_pred --------------------CCccHHHHHHHHHHHHHHHHHHHHc--cCCeEEEEEecCccCCchhhh--------hh--
Confidence 3567899999999999999999987 469999999999999985310 00
Q ss_pred hHHhhhcCccchhhhhhhccc
Q 018819 328 FQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 328 ~~~~~~~~~~s~~~~a~~i~~ 348 (350)
......+++++|+|+.++.
T Consensus 170 --~~~~~~~~~~~dva~~~~~ 188 (202)
T 3d7l_A 170 --FFEGFLPVPAAKVARAFEK 188 (202)
T ss_dssp --GSTTCCCBCHHHHHHHHHH
T ss_pred --hccccCCCCHHHHHHHHHH
Confidence 0112446789999987653
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=237.72 Aligned_cols=210 Identities=20% Similarity=0.228 Sum_probs=162.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChh---HHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL---KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~---~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
.++++||||||+||||++++++|+++|+.+|++++|+.. ..+++.+++...+.++.++.||++|.++++++++.+ .
T Consensus 224 ~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i-~ 302 (486)
T 2fr1_A 224 KPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGI-G 302 (486)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTS-C
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHH-H
Confidence 368899999999999999999999999767999999864 355666667666788999999999999999999998 5
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
.++++|+||||||+... ..+.+.+.++|++++++|+.|++++++++.+. + .++||++||+++..+.
T Consensus 303 ~~g~ld~VIh~AG~~~~-~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~----~--~~~~V~~SS~a~~~g~------- 368 (486)
T 2fr1_A 303 DDVPLSAVFHAAATLDD-GTVDTLTGERIERASRAKVLGARNLHELTREL----D--LTAFVLFSSFASAFGA------- 368 (486)
T ss_dssp TTSCEEEEEECCCCCCC-CCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS----C--CSEEEEEEEHHHHTCC-------
T ss_pred hcCCCcEEEECCccCCC-CccccCCHHHHHHHHHHHHHHHHHHHHHhCcC----C--CCEEEEEcChHhcCCC-------
Confidence 67899999999999754 67778899999999999999999999987542 2 4699999999887642
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~ 320 (350)
+++..|+++|++++.|++.++ ..|+++++|+||.+.++++..... .
T Consensus 369 ----------------------------~g~~~Yaaaka~l~~la~~~~-----~~gi~v~~i~pG~~~~~gm~~~~~-~ 414 (486)
T 2fr1_A 369 ----------------------------PGLGGYAPGNAYLDGLAQQRR-----SDGLPATAVAWGTWAGSGMAEGPV-A 414 (486)
T ss_dssp ----------------------------TTCTTTHHHHHHHHHHHHHHH-----HTTCCCEEEEECCBC-----------
T ss_pred ----------------------------CCCHHHHHHHHHHHHHHHHHH-----hcCCeEEEEECCeeCCCcccchhH-H
Confidence 577899999999998876543 349999999999999875432111 0
Q ss_pred HHhhhhhhHHhhhcCccchhhhhhhccc
Q 018819 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 321 ~~~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
.+ + .......++++++++.+..
T Consensus 415 ~~-----~-~~~g~~~i~~e~~a~~l~~ 436 (486)
T 2fr1_A 415 DR-----F-RRHGVIEMPPETACRALQN 436 (486)
T ss_dssp -------C-TTTTEECBCHHHHHHHHHH
T ss_pred HH-----H-HhcCCCCCCHHHHHHHHHH
Confidence 00 0 0011235788888776643
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-27 Score=229.19 Aligned_cols=206 Identities=21% Similarity=0.189 Sum_probs=164.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChh---HHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL---KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~---~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
.++++||||||+||||++++++|+++|+.+|++++|+.. ..++..+++...+.++.++.||++|.++++++++.
T Consensus 257 ~~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~--- 333 (511)
T 2z5l_A 257 QPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTA--- 333 (511)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHH---
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhc---
Confidence 367899999999999999999999999768999999863 45666677777788899999999999999999886
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
+++|+||||||+... ..+.+.+.++|+.++++|+.|++++++.+.+. . + .++||++||+++..+.
T Consensus 334 --~~ld~VVh~AGv~~~-~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~-~--~--~~~~V~~SS~a~~~g~------- 398 (511)
T 2z5l_A 334 --YPPNAVFHTAGILDD-AVIDTLSPESFETVRGAKVCGAELLHQLTADI-K--G--LDAFVLFSSVTGTWGN------- 398 (511)
T ss_dssp --SCCSEEEECCCCCCC-BCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSC-T--T--CCCEEEEEEGGGTTCC-------
T ss_pred --CCCcEEEECCcccCC-cccccCCHHHHHHHHHHHHHHHHHHHHHHhhc-c--C--CCEEEEEeCHHhcCCC-------
Confidence 689999999999754 67778899999999999999999999876432 1 1 3699999999887652
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcc-cCCcccccchh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI-ATTGLFREHIP 319 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v-~t~~~~~~~~~ 319 (350)
+++..|+++|++++.+++.+. ..|+++++|+||++ +|.|... . .
T Consensus 399 ----------------------------~g~~~YaaaKa~ld~la~~~~-----~~gi~v~sv~pG~~~~tgm~~~-~-~ 443 (511)
T 2z5l_A 399 ----------------------------AGQGAYAAANAALDALAERRR-----AAGLPATSVAWGLWGGGGMAAG-A-G 443 (511)
T ss_dssp ----------------------------TTBHHHHHHHHHHHHHHHHHH-----TTTCCCEEEEECCBCSTTCCCC-H-H
T ss_pred ----------------------------CCCHHHHHHHHHHHHHHHHHH-----HcCCcEEEEECCcccCCccccc-c-c
Confidence 578899999999999988643 34999999999999 6655422 1 1
Q ss_pred hHHhhhhhhHHhhhcCccchhhhhhhccc
Q 018819 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
..+ + .......++++++++.+..
T Consensus 444 ~~~-----~-~~~g~~~l~~e~~a~~l~~ 466 (511)
T 2z5l_A 444 EES-----L-SRRGLRAMDPDAAVDALLG 466 (511)
T ss_dssp HHH-----H-HHHTBCCBCHHHHHHHHHH
T ss_pred HHH-----H-HhcCCCCCCHHHHHHHHHH
Confidence 011 1 1122346789988887653
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-26 Score=259.84 Aligned_cols=222 Identities=15% Similarity=0.146 Sum_probs=165.5
Q ss_pred ccCCCEEEEEcCCCc-hHHHHHHHHHHcCCcEEEEEecChhH-----HHHHHHHhccCCCceEEEEccCCCHHHHHHHHH
Q 018819 83 TLRKGSVIITGASSG-LGLATAKALAETGKWHIIMACRDFLK-----AERAAKSAGMAKENYTIMHLDLASLDSVRQFVD 156 (350)
Q Consensus 83 ~l~~~~~lItGgs~g-IG~~ia~~la~~Ga~~Vi~~~r~~~~-----~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~ 156 (350)
.++||++|||||++| ||+++|+.|+++|| +|++++|+.+. ++++.+++...+.++..+.||++|.++++++++
T Consensus 2133 ~l~gKvaLVTGAs~GsIG~AiA~~La~~GA-~Vvi~~r~~~~~~~~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~lv~ 2211 (3089)
T 3zen_D 2133 XXXDEVAVVTGASKGSIAASVVGQLLDGGA-TVIATTSRLDDDRLAFYKQLYRDHARFDATLWVVPANMASYSDIDKLVE 2211 (3089)
T ss_dssp CCCCCEEEEESCCTTSHHHHHHHHHHHTTC-EEEEEESCCSHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHH
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHHCCC-EEEEEeCChhhhhhHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHH
Confidence 478999999999999 99999999999997 89999988655 666777777777789999999999999999999
Q ss_pred HHHH----cCCCCcEEEEcccc----CCCCCCCCCCCHHHHH----HHHhhhhHHHHHHHHHHHHHHhcCCCCC--CeEE
Q 018819 157 TFRR----SGRPLDVLVCNAAV----YLPTAKEPTFTAEGFE----LSVGTNHLGHFLLSRLLLDDLKQSDYPS--KRLI 222 (350)
Q Consensus 157 ~~~~----~~g~id~lv~~Ag~----~~~~~~~~~~~~~~~~----~~~~~n~~g~~~l~~~~~~~~~~~~~~~--g~iV 222 (350)
++.+ .+|+||+||||||+ ........+.+.++|+ ..+++|+.+++.+++.+.+.|.+++... +.|+
T Consensus 2212 ~i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~ii~ 2291 (3089)
T 3zen_D 2212 WVGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHVVL 2291 (3089)
T ss_dssp HHTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEEEEE
T ss_pred HHHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEE
Confidence 9988 88999999999997 2111223333444444 4499999999999999999998764211 1222
Q ss_pred EEeccCCCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHh--hcCCCCcEE
Q 018819 223 IVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRR--FHEETGIAF 300 (350)
Q Consensus 223 ~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e--~~~~~gi~v 300 (350)
+.|+..+. +++...|++||+|+++|+++++.| + .+ +|+|
T Consensus 2292 ~~ss~~g~-------------------------------------~g~~~aYsASKaAl~~LtrslA~E~~~-a~-~IrV 2332 (3089)
T 3zen_D 2292 PGSPNRGM-------------------------------------FGGDGAYGEAKSALDALENRWSAEKSW-AE-RVSL 2332 (3089)
T ss_dssp EECSSTTS-------------------------------------CSSCSSHHHHGGGHHHHHHHHHHCSTT-TT-TEEE
T ss_pred ECCccccc-------------------------------------CCCchHHHHHHHHHHHHHHHHHhcccc-CC-CeEE
Confidence 23332222 234568999999999999999999 5 44 6999
Q ss_pred EEeeCCcccCCcccccchhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 301 ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 301 ~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
|+|+||+|+|+.+......... .......+..+|+|+|..+++|
T Consensus 2333 n~v~PG~v~tT~l~~~~~~~~~-----~~~~~~~r~~~PeEIA~avlfL 2376 (3089)
T 3zen_D 2333 AHALIGWTKGTGLMGQNDAIVS-----AVEEAGVTTYTTDEMAAMLLDL 2376 (3089)
T ss_dssp EEEECCCEECSTTTTTTTTTHH-----HHGGGSCBCEEHHHHHHHHHHT
T ss_pred EEEeecccCCCcccccchhHHH-----HHHhcCCCCCCHHHHHHHHHHH
Confidence 9999999994433322111111 1111223445899999988775
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-27 Score=210.97 Aligned_cols=222 Identities=22% Similarity=0.188 Sum_probs=153.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
|++|||||+||||++++++|+++|+ +|++++|+.+..+ . .+.+|++|.++++++++++ .+++|
T Consensus 2 k~vlVtGasg~iG~~l~~~L~~~g~-~V~~~~r~~~~~~-------~------~~~~D~~~~~~~~~~~~~~---~~~~d 64 (255)
T 2dkn_A 2 SVIAITGSASGIGAALKELLARAGH-TVIGIDRGQADIE-------A------DLSTPGGRETAVAAVLDRC---GGVLD 64 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSSSEE-------C------CTTSHHHHHHHHHHHHHHH---TTCCS
T ss_pred cEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCChhHcc-------c------cccCCcccHHHHHHHHHHc---CCCcc
Confidence 4899999999999999999999995 8999999754321 0 1678999999999988865 36899
Q ss_pred EEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccc
Q 018819 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (350)
Q Consensus 167 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (350)
+||||||.... .+.|+..+++|+.+++++++++.+.|.+.+ .++||++||..+..+.... ....+
T Consensus 65 ~vi~~Ag~~~~--------~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~~~~~~-----~~~~~ 129 (255)
T 2dkn_A 65 GLVCCAGVGVT--------AANSGLVVAVNYFGVSALLDGLAEALSRGQ--QPAAVIVGSIAATQPGAAE-----LPMVE 129 (255)
T ss_dssp EEEECCCCCTT--------SSCHHHHHHHHTHHHHHHHHHHHHHHHTSS--SCEEEEECCGGGGSTTGGG-----CHHHH
T ss_pred EEEECCCCCCc--------chhHHHHHHHHhHHHHHHHHHHHHHhhhcC--CceEEEEeccccccccccc-----cchhh
Confidence 99999997531 124889999999999999999999998764 4699999999876421000 00000
Q ss_pred cccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhhhh
Q 018819 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFP 326 (350)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~ 326 (350)
.... ........+. ....++...|++||++++.+++.++.++ .+.||++++|+||+|.|++.... .+ .....
T Consensus 130 ~~~~---~~~~~~~~~~-~~~~~~~~~Y~~sK~a~~~~~~~~~~~~-~~~gi~v~~v~pg~v~~~~~~~~-~~--~~~~~ 201 (255)
T 2dkn_A 130 AMLA---GDEARAIELA-EQQGQTHLAYAGSKYAVTCLARRNVVDW-AGRGVRLNVVAPGAVETPLLQAS-KA--DPRYG 201 (255)
T ss_dssp HHHH---TCHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHTHHHH-HHTTCEEEEEEECCBCSHHHHHH-HH--CTTTH
T ss_pred hhcc---cchhhhhhhc-cccCCcchhHHHHHHHHHHHHHHHHHHH-hhcCcEEEEEcCCcccchhhhhc-cc--chhhH
Confidence 0000 0000000000 0001467799999999999999999998 56699999999999999864221 00 00000
Q ss_pred hhHHh---hhcCccchhhhhhhccc
Q 018819 327 PFQKY---ITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 327 ~~~~~---~~~~~~s~~~~a~~i~~ 348 (350)
..... ....+.+++|+|+.+++
T Consensus 202 ~~~~~~~~~~~~~~~~~dva~~~~~ 226 (255)
T 2dkn_A 202 ESTRRFVAPLGRGSEPREVAEAIAF 226 (255)
T ss_dssp HHHHSCCCTTSSCBCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 11111 22457899999988765
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.8e-26 Score=255.11 Aligned_cols=224 Identities=18% Similarity=0.161 Sum_probs=165.4
Q ss_pred cchHHHHHHhhcccCCceecccccCCCCccc---cCC---CcCccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEE
Q 018819 44 SSSALRCKREFSQRNGVVRAQTMATASPAVD---VSS---PQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMA 117 (350)
Q Consensus 44 ~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~ 117 (350)
..+|++.+++..+.||+++...........+ +.+ ........+|+||||||++|||+++|++|+++|+++|+++
T Consensus 1836 i~eA~~~l~~g~~~GKvVi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~ 1915 (2512)
T 2vz8_A 1836 VEAAFRYMAQGKHIGKVVIQVREEEQGPAPRGLPPIALTGLSKTFCPPHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLT 1915 (2512)
T ss_dssp HHHHHHHHHTTCCSSEEEEECSCCCCSSCCCCCCCCCEEEECCCCCCTTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHhhhccCccceEEEECCCcccccccccccccccccccccccCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEE
Confidence 4779999999999999987654322111111 000 0111224789999999999999999999999998779999
Q ss_pred ecChhH---HHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHh
Q 018819 118 CRDFLK---AERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVG 194 (350)
Q Consensus 118 ~r~~~~---~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~ 194 (350)
+|+..+ ..+..+++...+.++.++.||++|.++++++++++.+ +++||+||||||+... ..+.+++.++|+++++
T Consensus 1916 ~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~~~~~~~~-~g~id~lVnnAgv~~~-~~~~~~t~e~~~~~~~ 1993 (2512)
T 2vz8_A 1916 SRSGIRTGYQARQVREWRRQGVQVLVSTSNASSLDGARSLITEATQ-LGPVGGVFNLAMVLRD-AVLENQTPEFFQDVSK 1993 (2512)
T ss_dssp CSSCCCSHHHHHHHHHHHHTTCEEEEECCCSSSHHHHHHHHHHHHH-HSCEEEEEECCCC-----------------CTT
T ss_pred eCCCcchHHHHHHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHh-cCCCcEEEECCCcCCC-CchhhCCHHHHHHHHH
Confidence 997533 3444555555677899999999999999999999874 7899999999998754 7788999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhch
Q 018819 195 TNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAY 274 (350)
Q Consensus 195 ~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 274 (350)
+|+.|++++++++.+.|.+. |+||++||+++..+. +++..|
T Consensus 1994 ~nv~g~~~l~~~~~~~~~~~----g~iV~iSS~ag~~g~-----------------------------------~g~~~Y 2034 (2512)
T 2vz8_A 1994 PKYSGTANLDRVTREACPEL----DYFVIFSSVSCGRGN-----------------------------------AGQANY 2034 (2512)
T ss_dssp TTHHHHHHHHHHHHHHCTTC----CEEEEECCHHHHTTC-----------------------------------TTCHHH
T ss_pred HHHHHHHHHHHHHHHhcccC----CEEEEecchhhcCCC-----------------------------------CCcHHH
Confidence 99999999999999988653 699999999988653 678999
Q ss_pred hhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 275 KDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 275 ~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
+++|+++++|++.++.+ |++..++.+|.+...++
T Consensus 2035 ~aaKaal~~l~~~rr~~-----Gl~~~a~~~g~~~~~G~ 2068 (2512)
T 2vz8_A 2035 GFANSAMERICEKRRHD-----GLPGLAVQWGAIGDVGV 2068 (2512)
T ss_dssp HHHHHHHHHHHHHHHHT-----TSCCCEEEECCBCTTST
T ss_pred HHHHHHHHHHHHHHHHC-----CCcEEEEEccCcCCcch
Confidence 99999999999976654 78888888887755443
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5e-25 Score=198.12 Aligned_cols=169 Identities=18% Similarity=0.155 Sum_probs=135.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
++|++|||||+||||+++++.|+++| .+|++++|+..+.. +.++.++.+|++|.+++.++++ +
T Consensus 2 ~~k~vlVTGasg~IG~~la~~L~~~G-~~V~~~~r~~~~~~---------~~~~~~~~~Dl~d~~~~~~~~~-------~ 64 (267)
T 3rft_A 2 AMKRLLVTGAAGQLGRVMRERLAPMA-EILRLADLSPLDPA---------GPNEECVQCDLADANAVNAMVA-------G 64 (267)
T ss_dssp CEEEEEEESTTSHHHHHHHHHTGGGE-EEEEEEESSCCCCC---------CTTEEEEECCTTCHHHHHHHHT-------T
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCCcccc---------CCCCEEEEcCCCCHHHHHHHHc-------C
Confidence 45799999999999999999999999 59999999864321 4578999999999999998876 6
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
+|+||||||.. +.+.|+..+++|+.|++++++++.+. + .++||++||..++... .
T Consensus 65 ~D~vi~~Ag~~---------~~~~~~~~~~~N~~g~~~l~~a~~~~----~--~~~iv~~SS~~~~g~~-~--------- 119 (267)
T 3rft_A 65 CDGIVHLGGIS---------VEKPFEQILQGNIIGLYNLYEAARAH----G--QPRIVFASSNHTIGYY-P--------- 119 (267)
T ss_dssp CSEEEECCSCC---------SCCCHHHHHHHHTHHHHHHHHHHHHT----T--CCEEEEEEEGGGGTTS-B---------
T ss_pred CCEEEECCCCc---------CcCCHHHHHHHHHHHHHHHHHHHHHc----C--CCEEEEEcchHHhCCC-C---------
Confidence 99999999983 22357889999999999999998432 2 3699999998876321 0
Q ss_pred cccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
......+..+.++...|+.||++.+.+++.++.++ |+++++|+||.|.++.
T Consensus 120 -------------~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~a~~~----g~~~~~vr~~~v~~~~ 170 (267)
T 3rft_A 120 -------------QTERLGPDVPARPDGLYGVSKCFGENLARMYFDKF----GQETALVRIGSCTPEP 170 (267)
T ss_dssp -------------TTSCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECBCSSSC
T ss_pred -------------CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh----CCeEEEEEeecccCCC
Confidence 01122233345667899999999999999999887 8999999999998764
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-23 Score=194.02 Aligned_cols=171 Identities=16% Similarity=0.206 Sum_probs=141.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHc-CCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~-Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
.+++|++|||||+|+||++++++|+++ |+..|++++|+..+.....+.+. ..++.++.+|++|.+++.++++
T Consensus 18 ~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~----- 90 (344)
T 2gn4_A 18 MLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFN--DPRMRFFIGDVRDLERLNYALE----- 90 (344)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHC--CTTEEEEECCTTCHHHHHHHTT-----
T ss_pred hhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhc--CCCEEEEECCCCCHHHHHHHHh-----
Confidence 468899999999999999999999999 95499999999877776666664 2468899999999998887764
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++|+||||||.... .....++...+++|+.|+.++++++.+.. .++||++||..+.
T Consensus 91 --~~D~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~------v~~~V~~SS~~~~----------- 146 (344)
T 2gn4_A 91 --GVDICIHAAALKHV-----PIAEYNPLECIKTNIMGASNVINACLKNA------ISQVIALSTDKAA----------- 146 (344)
T ss_dssp --TCSEEEECCCCCCH-----HHHHHSHHHHHHHHHHHHHHHHHHHHHTT------CSEEEEECCGGGS-----------
T ss_pred --cCCEEEECCCCCCC-----CchhcCHHHHHHHHHHHHHHHHHHHHhCC------CCEEEEecCCccC-----------
Confidence 69999999997431 11234567899999999999999987642 2599999997654
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
.+...|+.||++.+.+++.++.++ .+.|+++++|+||.|.++.
T Consensus 147 ---------------------------~p~~~Y~~sK~~~E~~~~~~~~~~-~~~g~~~~~vRpg~v~g~~ 189 (344)
T 2gn4_A 147 ---------------------------NPINLYGATKLCSDKLFVSANNFK-GSSQTQFSVVRYGNVVGSR 189 (344)
T ss_dssp ---------------------------SCCSHHHHHHHHHHHHHHHGGGCC-CSSCCEEEEECCCEETTCT
T ss_pred ---------------------------CCccHHHHHHHHHHHHHHHHHHHh-CCCCcEEEEEEeccEECCC
Confidence 134689999999999999998876 5579999999999999874
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.4e-23 Score=182.54 Aligned_cols=193 Identities=14% Similarity=0.141 Sum_probs=135.7
Q ss_pred CcCccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCce-EEEEccCCCHHHHHHHHH
Q 018819 78 PQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENY-TIMHLDLASLDSVRQFVD 156 (350)
Q Consensus 78 ~~~~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v-~~~~~Dvs~~~~v~~~~~ 156 (350)
......++++++|||||+|+||+++++.|+++| ++|++++|+.++.++... .++ .++.+|++ +
T Consensus 13 ~~~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G-~~V~~~~R~~~~~~~~~~------~~~~~~~~~Dl~--~------- 76 (236)
T 3e8x_A 13 GRENLYFQGMRVLVVGANGKVARYLLSELKNKG-HEPVAMVRNEEQGPELRE------RGASDIVVANLE--E------- 76 (236)
T ss_dssp --------CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHH------TTCSEEEECCTT--S-------
T ss_pred cccccCcCCCeEEEECCCChHHHHHHHHHHhCC-CeEEEEECChHHHHHHHh------CCCceEEEcccH--H-------
Confidence 334457899999999999999999999999999 599999999877665433 257 88999999 2
Q ss_pred HHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCC
Q 018819 157 TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236 (350)
Q Consensus 157 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~ 236 (350)
.+.+.++++|+||||||.... ++|+..+++|+.++.++++++... + .++||++||..+..+.
T Consensus 77 ~~~~~~~~~D~vi~~ag~~~~---------~~~~~~~~~n~~~~~~l~~a~~~~----~--~~~iv~~SS~~~~~~~--- 138 (236)
T 3e8x_A 77 DFSHAFASIDAVVFAAGSGPH---------TGADKTILIDLWGAIKTIQEAEKR----G--IKRFIMVSSVGTVDPD--- 138 (236)
T ss_dssp CCGGGGTTCSEEEECCCCCTT---------SCHHHHHHTTTHHHHHHHHHHHHH----T--CCEEEEECCTTCSCGG---
T ss_pred HHHHHHcCCCEEEECCCCCCC---------CCccccchhhHHHHHHHHHHHHHc----C--CCEEEEEecCCCCCCC---
Confidence 333445689999999997431 457889999999999999998543 1 3599999996554210
Q ss_pred CCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccccc
Q 018819 237 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 316 (350)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~ 316 (350)
. .++....|+.+|++.+.+.+ + .|+++++|+||++.|++....
T Consensus 139 ----------------------------~-~~~~~~~Y~~sK~~~e~~~~----~----~gi~~~~lrpg~v~~~~~~~~ 181 (236)
T 3e8x_A 139 ----------------------------Q-GPMNMRHYLVAKRLADDELK----R----SSLDYTIVRPGPLSNEESTGK 181 (236)
T ss_dssp ----------------------------G-SCGGGHHHHHHHHHHHHHHH----H----SSSEEEEEEECSEECSCCCSE
T ss_pred ----------------------------C-ChhhhhhHHHHHHHHHHHHH----H----CCCCEEEEeCCcccCCCCCCe
Confidence 0 01356799999999887765 3 489999999999999854221
Q ss_pred chhhHHhhhhhhHHhhhcCccchhhhhhhccc
Q 018819 317 HIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
..... .. .....+++++|+|+.+++
T Consensus 182 ~~~~~-----~~--~~~~~~i~~~Dva~~~~~ 206 (236)
T 3e8x_A 182 VTVSP-----HF--SEITRSITRHDVAKVIAE 206 (236)
T ss_dssp EEEES-----SC--SCCCCCEEHHHHHHHHHH
T ss_pred EEecc-----CC--CcccCcEeHHHHHHHHHH
Confidence 11000 00 001345778888877654
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-21 Score=180.26 Aligned_cols=198 Identities=14% Similarity=0.064 Sum_probs=140.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh-hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDF-LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~-~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
+++|||||+|+||+++++.|+++| +.|++++|+. .......+.+... .++.++.+|++|.++++++++.. ++
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~l~~~-~~~~~~~~Dl~d~~~~~~~~~~~-----~~ 74 (347)
T 1orr_A 2 AKLLITGGCGFLGSNLASFALSQG-IDLIVFDNLSRKGATDNLHWLSSL-GNFEFVHGDIRNKNDVTRLITKY-----MP 74 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSTTHHHHHHHHHTT-CCCEEEECCTTCHHHHHHHHHHH-----CC
T ss_pred cEEEEeCCCchhHHHHHHHHHhCC-CEEEEEeCCCccCchhhhhhhccC-CceEEEEcCCCCHHHHHHHHhcc-----CC
Confidence 479999999999999999999999 5899988742 2222223333322 35888999999999999988763 69
Q ss_pred cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcc
Q 018819 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (350)
|+||||||.... +.+.++++..+++|+.++.++++++.+.+.+ ++||++||.+.+... .+ .+......
T Consensus 75 d~vih~A~~~~~-----~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~-----~~iv~~SS~~v~g~~-~~-~~~~e~~~ 142 (347)
T 1orr_A 75 DSCFHLAGQVAM-----TTSIDNPCMDFEINVGGTLNLLEAVRQYNSN-----CNIIYSSTNKVYGDL-EQ-YKYNETET 142 (347)
T ss_dssp SEEEECCCCCCH-----HHHHHCHHHHHHHHHHHHHHHHHHHHHHCTT-----CEEEEEEEGGGGTTC-TT-SCEEECSS
T ss_pred CEEEECCcccCh-----hhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-----ceEEEeccHHHhCCC-Cc-CCcccccc
Confidence 999999997421 2345678899999999999999999887532 489999998654211 10 00000000
Q ss_pred ccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.... ........+..+..+...|+.||++.+.+++.++.++ |+++++|+||+|.+++.
T Consensus 143 ~~~~------~~~~~~~~e~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilrp~~v~g~~~ 200 (347)
T 1orr_A 143 RYTC------VDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIF----GLNTVVFRHSSMYGGRQ 200 (347)
T ss_dssp CEEE------TTCTTCBCTTSCCCCCHHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECCEECTTC
T ss_pred cccc------cccccCccccCCCCCCCchHHHHHHHHHHHHHHHHHh----CCcEEEEccCceeCcCC
Confidence 0000 0000112233344567899999999999999998886 89999999999999865
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.87 E-value=7.6e-23 Score=180.73 Aligned_cols=190 Identities=18% Similarity=0.164 Sum_probs=137.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCc--EEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKW--HIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~--~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
++++++|||||+||||+++++.|+++| . +|++++|+.+..+... ..++.++.+|++|+++++++++
T Consensus 16 m~~~~vlVtGasg~iG~~l~~~L~~~G-~~~~V~~~~r~~~~~~~~~------~~~~~~~~~D~~d~~~~~~~~~----- 83 (242)
T 2bka_A 16 MQNKSVFILGASGETGRVLLKEILEQG-LFSKVTLIGRRKLTFDEEA------YKNVNQEVVDFEKLDDYASAFQ----- 83 (242)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHT-CCSEEEEEESSCCCCCSGG------GGGCEEEECCGGGGGGGGGGGS-----
T ss_pred hcCCeEEEECCCcHHHHHHHHHHHcCC-CCCEEEEEEcCCCCccccc------cCCceEEecCcCCHHHHHHHhc-----
Confidence 567899999999999999999999999 5 8999999864332110 1257889999999988877654
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++|+||||||... ..+.++..+++|+.++.++++++.+ .+ .++||++||..+..
T Consensus 84 --~~d~vi~~ag~~~--------~~~~~~~~~~~n~~~~~~~~~~~~~----~~--~~~iv~~SS~~~~~---------- 137 (242)
T 2bka_A 84 --GHDVGFCCLGTTR--------GKAGAEGFVRVDRDYVLKSAELAKA----GG--CKHFNLLSSKGADK---------- 137 (242)
T ss_dssp --SCSEEEECCCCCH--------HHHHHHHHHHHHTHHHHHHHHHHHH----TT--CCEEEEECCTTCCT----------
T ss_pred --CCCEEEECCCccc--------ccCCcccceeeeHHHHHHHHHHHHH----CC--CCEEEEEccCcCCC----------
Confidence 6999999999742 1345788999999999999887543 22 35999999987652
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCc-EEEEeeCCcccCCcccccchhh
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGI-AFASLYPGCIATTGLFREHIPL 320 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi-~v~~v~PG~v~t~~~~~~~~~~ 320 (350)
++...|+.+|++++.+++. + ++ ++++|+||++.|++........
T Consensus 138 ---------------------------~~~~~Y~~sK~~~e~~~~~----~----~~~~~~~vrpg~v~~~~~~~~~~~~ 182 (242)
T 2bka_A 138 ---------------------------SSNFLYLQVKGEVEAKVEE----L----KFDRYSVFRPGVLLCDRQESRPGEW 182 (242)
T ss_dssp ---------------------------TCSSHHHHHHHHHHHHHHT----T----CCSEEEEEECCEEECTTGGGSHHHH
T ss_pred ---------------------------CCcchHHHHHHHHHHHHHh----c----CCCCeEEEcCceecCCCCCCcHHHH
Confidence 2345799999998887653 2 56 7999999999998642211111
Q ss_pred -HHhh---hhhhHHhhhcCccchhhhhhhccc
Q 018819 321 -FRLL---FPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 321 -~~~~---~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
.+.. .+.. .....+.+++|+|+.+++
T Consensus 183 ~~~~~~~~~~~~--~~~~~~~~~~dva~~~~~ 212 (242)
T 2bka_A 183 LVRKFFGSLPDS--WASGHSVPVVTVVRAMLN 212 (242)
T ss_dssp HHHHHHCSCCTT--GGGGTEEEHHHHHHHHHH
T ss_pred HHHHhhcccCcc--ccCCcccCHHHHHHHHHH
Confidence 0000 0100 002346899999988765
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-21 Score=181.16 Aligned_cols=190 Identities=16% Similarity=0.135 Sum_probs=144.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
++++++|||||+|+||.+++++|+++| +.|++++|+..........+. .+.++.++.+|++|++++.++++.+
T Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~----- 79 (357)
T 1rkx_A 7 WQGKRVFVTGHTGFKGGWLSLWLQTMG-ATVKGYSLTAPTVPSLFETAR-VADGMQSEIGDIRDQNKLLESIREF----- 79 (357)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCSSSSCHHHHTT-TTTTSEEEECCTTCHHHHHHHHHHH-----
T ss_pred hCCCEEEEECCCchHHHHHHHHHHhCC-CeEEEEeCCCcccchhhHhhc-cCCceEEEEccccCHHHHHHHHHhc-----
Confidence 567899999999999999999999999 599999997654433333332 2356889999999999999998876
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCC
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (350)
++|+||||||.... +.+.++++..+++|+.++.++++++.+. . . .++||++||...+-.. ..
T Consensus 80 ~~d~vih~A~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~a~~~~--~-~--~~~~v~~SS~~vyg~~-~~------- 141 (357)
T 1rkx_A 80 QPEIVFHMAAQPLV-----RLSYSEPVETYSTNVMGTVYLLEAIRHV--G-G--VKAVVNITSDKCYDNK-EW------- 141 (357)
T ss_dssp CCSEEEECCSCCCH-----HHHHHCHHHHHHHHTHHHHHHHHHHHHH--C-C--CCEEEEECCGGGBCCC-CS-------
T ss_pred CCCEEEECCCCccc-----ccchhCHHHHHHHHHHHHHHHHHHHHHh--C-C--CCeEEEecCHHHhCCC-Cc-------
Confidence 69999999996321 2345678899999999999999998763 1 1 2599999998654211 00
Q ss_pred ccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcC-----CCCcEEEEeeCCcccCCcc
Q 018819 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE-----ETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~-----~~gi~v~~v~PG~v~t~~~ 313 (350)
..+..+..+..+...|+.||.+.+.+++.++.++.. +.|+++++|+||.|.+|..
T Consensus 142 ---------------~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~~ 201 (357)
T 1rkx_A 142 ---------------IWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGD 201 (357)
T ss_dssp ---------------SSCBCTTSCBCCSSHHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTC
T ss_pred ---------------CCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCCC
Confidence 001122223445678999999999999999988621 3489999999999999864
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-21 Score=179.33 Aligned_cols=184 Identities=15% Similarity=0.141 Sum_probs=138.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhcc-CCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~-~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
.++++|||||+|+||+++++.|+++| ++|++++|+.....+..+.+.. .+.++.++.+|++|.++++++++. +
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~ 77 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHG-YDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDA-----H 77 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHH-----S
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCC-CcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhc-----c
Confidence 46799999999999999999999999 4899999875443333333321 245688999999999999998876 3
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCC
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (350)
++|+||||||.... ....+..+..+++|+.++.++++++.. .+ .++||++||.+.+ +..
T Consensus 78 ~~d~vih~A~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~iv~~SS~~~~-g~~--------- 136 (341)
T 3enk_A 78 PITAAIHFAALKAV-----GESVAKPIEYYRNNLDSLLSLLRVMRE----RA--VKRIVFSSSATVY-GVP--------- 136 (341)
T ss_dssp CCCEEEECCCCCCH-----HHHHHCHHHHHHHHHHHHHHHHHHHHH----TT--CCEEEEEEEGGGB-CSC---------
T ss_pred CCcEEEECcccccc-----CccccChHHHHHHHHHHHHHHHHHHHh----CC--CCEEEEEecceEe-cCC---------
Confidence 79999999997532 123445667899999999998887543 22 3599999997654 210
Q ss_pred ccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
...+..+..+..+...|+.||.+.+.+++.++.++ .++++++++||.|.+|.
T Consensus 137 --------------~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~lRp~~v~G~~ 188 (341)
T 3enk_A 137 --------------ERSPIDETFPLSATNPYGQTKLMAEQILRDVEAAD---PSWRVATLRYFNPVGAH 188 (341)
T ss_dssp --------------SSSSBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHC---TTCEEEEEEECEEECCC
T ss_pred --------------CCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcC---CCceEEEEeeccccCCc
Confidence 01122333344566799999999999999999886 26999999999998874
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-21 Score=178.24 Aligned_cols=178 Identities=16% Similarity=0.149 Sum_probs=137.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+.+++|||||+|+||+++++.|+++| +.|++++|+... +. + ++.++.+|++|.+++.++++. ++
T Consensus 11 ~~~~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~-~~----l-----~~~~~~~Dl~d~~~~~~~~~~-----~~ 74 (321)
T 2pk3_A 11 GSMRALITGVAGFVGKYLANHLTEQN-VEVFGTSRNNEA-KL----P-----NVEMISLDIMDSQRVKKVISD-----IK 74 (321)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCTTC-CC----T-----TEEEEECCTTCHHHHHHHHHH-----HC
T ss_pred CcceEEEECCCChHHHHHHHHHHHCC-CEEEEEecCCcc-cc----c-----eeeEEECCCCCHHHHHHHHHh-----cC
Confidence 56799999999999999999999999 599999997643 11 1 578899999999999998876 37
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
+|+||||||.... +.+.++++..+++|+.|+.++++++ +.+.. .++||++||.+.+....
T Consensus 75 ~d~vih~A~~~~~-----~~~~~~~~~~~~~Nv~g~~~l~~a~-~~~~~----~~~iv~~SS~~v~g~~~---------- 134 (321)
T 2pk3_A 75 PDYIFHLAAKSSV-----KDSWLNKKGTFSTNVFGTLHVLDAV-RDSNL----DCRILTIGSSEEYGMIL---------- 134 (321)
T ss_dssp CSEEEECCSCCCH-----HHHTTCHHHHHHHHHHHHHHHHHHH-HHHTC----CCEEEEEEEGGGTBSCC----------
T ss_pred CCEEEEcCcccch-----hhhhhcHHHHHHHHHHHHHHHHHHH-HHhCC----CCeEEEEccHHhcCCCC----------
Confidence 9999999997532 1233467889999999999999998 55521 35999999986542100
Q ss_pred cccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccc
Q 018819 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~ 314 (350)
....+..+..+.++...|+.||++.+.+++.++.++ |+++++++||.|.+|+..
T Consensus 135 ------------~~~~~~~E~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilrp~~v~g~~~~ 188 (321)
T 2pk3_A 135 ------------PEESPVSEENQLRPMSPYGVSKASVGMLARQYVKAY----GMDIIHTRTFNHIGPGQS 188 (321)
T ss_dssp ------------GGGCSBCTTSCCBCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECEEECTTCC
T ss_pred ------------CCCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHc----CCCEEEEEeCcccCcCCC
Confidence 001112233344567799999999999999998876 899999999999998653
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-21 Score=177.21 Aligned_cols=187 Identities=14% Similarity=0.057 Sum_probs=144.0
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHH-HcCCcEEEEEecChh------------HHHHHHHHhccCCCceEEEEccCCCHHH
Q 018819 84 LRKGSVIITGASSGLGLATAKALA-ETGKWHIIMACRDFL------------KAERAAKSAGMAKENYTIMHLDLASLDS 150 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la-~~Ga~~Vi~~~r~~~------------~~~~~~~~l~~~~~~v~~~~~Dvs~~~~ 150 (350)
+.+|++|||||++|||++++..|+ ..|+ .++++++..+ ......+.++..|.+...+.||++|+++
T Consensus 48 ~~pK~vLVtGaSsGiGlA~AialAf~~GA-~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~e~ 126 (401)
T 4ggo_A 48 KAPKNVLVLGCSNGYGLASRITAAFGYGA-ATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFSDEI 126 (401)
T ss_dssp CCCCEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHhhCCC-CEEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCCHHH
Confidence 467899999999999999999999 6787 7777776432 2344556667778899999999999999
Q ss_pred HHHHHHHHHHcCCCCcEEEEccccCCCC------------CC---------------------CCCCCHHHHH---HHHh
Q 018819 151 VRQFVDTFRRSGRPLDVLVCNAAVYLPT------------AK---------------------EPTFTAEGFE---LSVG 194 (350)
Q Consensus 151 v~~~~~~~~~~~g~id~lv~~Ag~~~~~------------~~---------------------~~~~~~~~~~---~~~~ 194 (350)
++++++++.+++|+||+||||++..... ++ +...+.++++ .+|.
T Consensus 127 i~~vi~~i~~~~G~IDiLVhS~A~~~r~~p~~g~~~~S~LKpi~~~~~~~~ldt~~~~i~~~~l~pat~eeie~T~~vMg 206 (401)
T 4ggo_A 127 KAQVIEEAKKKGIKFDLIVYSLASPVRTDPDTGIMHKSVLKPFGKTFTGKTVDPFTGELKEISAEPANDEEAAATVKVMG 206 (401)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEECTTTCCEEEEEECCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCCCEEEEecccccccCCCCCceeeeeecccccccccccccccccccccccccCCcHHHHHHHHHHHh
Confidence 9999999999999999999999975210 01 1123444444 4555
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCc--hh
Q 018819 195 TNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDG--AK 272 (350)
Q Consensus 195 ~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 272 (350)
...++.|...+...+.|.+ ++++|.+|++.+... +|. ..
T Consensus 207 ~s~~s~w~~al~~a~lla~----G~siva~SYiGse~t-----------------------------------~P~Y~~G 247 (401)
T 4ggo_A 207 GEDWERWIKQLSKEGLLEE----GCITLAYSYIGPEAT-----------------------------------QALYRKG 247 (401)
T ss_dssp SHHHHHHHHHHHHTTCEEE----EEEEEEEECCCCGGG-----------------------------------HHHHTTS
T ss_pred hhHHHHHHHHHHhhhcccC----CceEEEEeccCccee-----------------------------------ecCCCcc
Confidence 5666777777777777765 469999999776431 122 24
Q ss_pred chhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 273 AYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 273 ~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.++++|++++..++.|+.++. ++++++++||.+.|+..
T Consensus 248 ~mG~AKaaLEa~~r~La~eL~---~~~a~v~v~~a~vT~As 285 (401)
T 4ggo_A 248 TIGKAKEHLEATAHRLNKENP---SIRAFVSVNKGLVTRAS 285 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT---TEEEEEEECCCCCCTTG
T ss_pred HHHHHHHHHHHHHHHHHHhcC---CCcEEEEEcCccccchh
Confidence 679999999999999999983 58999999999999743
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=7.7e-21 Score=176.15 Aligned_cols=220 Identities=15% Similarity=0.077 Sum_probs=143.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHH--HhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK--SAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~--~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
++++++|||||+|+||++++++|+++| +.|+++.|+.....+... .+...+.++.++.+|++|.+++.++++
T Consensus 3 ~~~~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----- 76 (337)
T 2c29_D 3 SQSETVCVTGASGFIGSWLVMRLLERG-YTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIK----- 76 (337)
T ss_dssp ---CEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHT-----
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCC-CEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHc-----
Confidence 467899999999999999999999999 589888887653322221 121111357889999999998887765
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
.+|+|||+|+... ... .+..+..+++|+.|+.++++++.+... .++||++||.++..+..... +
T Consensus 77 --~~d~Vih~A~~~~----~~~--~~~~~~~~~~nv~gt~~ll~a~~~~~~-----~~riV~~SS~~~~~~~~~~~-~-- 140 (337)
T 2c29_D 77 --GCTGVFHVATPMD----FES--KDPENEVIKPTIEGMLGIMKSCAAAKT-----VRRLVFTSSAGTVNIQEHQL-P-- 140 (337)
T ss_dssp --TCSEEEECCCCCC----SSC--SSHHHHTHHHHHHHHHHHHHHHHHHSC-----CCEEEEECCGGGTSCSSSCC-S--
T ss_pred --CCCEEEEeccccC----CCC--CChHHHHHHHHHHHHHHHHHHHHhCCC-----ccEEEEeeeHhhcccCCCCC-c--
Confidence 5899999998641 111 122356899999999999999876531 24999999987654321000 0
Q ss_pred CCccccccccccCCCCCCCcccCCCC---------CCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGD---------FDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
...+... .+....|+.||.+.+.+++.++.+. |+++++|+||.|.+|+
T Consensus 141 -------------------~~~E~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----gi~~~~lrp~~v~Gp~ 197 (337)
T 2c29_D 141 -------------------VYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKEN----NIDFITIIPTLVVGPF 197 (337)
T ss_dssp -------------------EECTTCCCCHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHH----TCCEEEEEECEEESCC
T ss_pred -------------------ccCcccCCchhhhcccCCccchHHHHHHHHHHHHHHHHHHc----CCcEEEEeCCceECCC
Confidence 0000000 0123479999999998888777654 8999999999999986
Q ss_pred ccccchhhHHh------hhhh-hHHhhhcCccchhhhhhhccc
Q 018819 313 LFREHIPLFRL------LFPP-FQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 313 ~~~~~~~~~~~------~~~~-~~~~~~~~~~s~~~~a~~i~~ 348 (350)
........... +.+. +.......++.++|+|+.++.
T Consensus 198 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~v~Dva~a~~~ 240 (337)
T 2c29_D 198 IMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHIY 240 (337)
T ss_dssp SCSSCCHHHHHHTHHHHTCGGGHHHHTEEEEEEHHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHHcCCCccccccCCCCEEEHHHHHHHHHH
Confidence 43221111110 0111 111011236788888887654
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-21 Score=178.76 Aligned_cols=186 Identities=17% Similarity=0.160 Sum_probs=135.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHH-HHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE-RAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~-~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
+++++|||||+|+||.++++.|+++| ++|++++|+..... ...+.+. .+.++.++.+|++|.+++.++++.+
T Consensus 2 ~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~----- 74 (345)
T 2z1m_A 2 SGKRALITGIRGQDGAYLAKLLLEKG-YEVYGADRRSGEFASWRLKELG-IENDVKIIHMDLLEFSNIIRTIEKV----- 74 (345)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECSCCSTTTTHHHHHTT-CTTTEEECCCCTTCHHHHHHHHHHH-----
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEECCCcccccccHhhcc-ccCceeEEECCCCCHHHHHHHHHhc-----
Confidence 57899999999999999999999999 59999999764322 1122222 1246888999999999999998876
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCC
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (350)
++|+||||||.... +.+.++++..+++|+.++.++++++... .. .++||++||.+.+-.. .
T Consensus 75 ~~d~vih~A~~~~~-----~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-~~----~~~iv~~SS~~vyg~~-~-------- 135 (345)
T 2z1m_A 75 QPDEVYNLAAQSFV-----GVSFEQPILTAEVDAIGVLRILEALRTV-KP----DTKFYQASTSEMFGKV-Q-------- 135 (345)
T ss_dssp CCSEEEECCCCCCH-----HHHTTSHHHHHHHHTHHHHHHHHHHHHH-CT----TCEEEEEEEGGGGCSC-S--------
T ss_pred CCCEEEECCCCcch-----hhhhhCHHHHHHHHHHHHHHHHHHHHHh-CC----CceEEEEechhhcCCC-C--------
Confidence 69999999997421 1234568899999999999999998753 11 1599999998654210 0
Q ss_pred ccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcC--CCCcEEEEeeCCcccCC
Q 018819 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE--ETGIAFASLYPGCIATT 311 (350)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~--~~gi~v~~v~PG~v~t~ 311 (350)
..+..+..+..+...|+.||++.+.+++.++.++.- ..++.++.+.||.+.|.
T Consensus 136 ---------------~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gpg~~~~~ 190 (345)
T 2z1m_A 136 ---------------EIPQTEKTPFYPRSPYAVAKLFGHWITVNYREAYNMFACSGILFNHESPLRGIEF 190 (345)
T ss_dssp ---------------SSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTS
T ss_pred ---------------CCCCCccCCCCCCChhHHHHHHHHHHHHHHHHHhCCceEeeeeeeecCCCCCCcc
Confidence 011122233456678999999999999999988620 23456677778877664
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-20 Score=175.15 Aligned_cols=182 Identities=15% Similarity=0.167 Sum_probs=135.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC-cEEEEEecChh--HHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFL--KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga-~~Vi~~~r~~~--~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+++++|||||+|+||+++++.|+++|. .+|++++|+.. ..+.+ +.+. .+.++.++.+|++|.+++++++.
T Consensus 2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~-~~~~-~~~~~~~~~~Dl~d~~~~~~~~~----- 74 (336)
T 2hun_A 2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANL-KDLE-DDPRYTFVKGDVADYELVKELVR----- 74 (336)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGG-TTTT-TCTTEEEEECCTTCHHHHHHHHH-----
T ss_pred CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHH-hhhc-cCCceEEEEcCCCCHHHHHHHhh-----
Confidence 345799999999999999999999972 48888888631 11111 1121 13468899999999999888872
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++|+||||||.... +.+.++++..+++|+.++.++++++.+. .. .++||++||.+.+... .
T Consensus 75 --~~d~vih~A~~~~~-----~~~~~~~~~~~~~Nv~g~~~l~~a~~~~--~~---~~~iv~~SS~~vyg~~-~------ 135 (336)
T 2hun_A 75 --KVDGVVHLAAESHV-----DRSISSPEIFLHSNVIGTYTLLESIRRE--NP---EVRFVHVSTDEVYGDI-L------ 135 (336)
T ss_dssp --TCSEEEECCCCCCH-----HHHHHCTHHHHHHHHHHHHHHHHHHHHH--CT---TSEEEEEEEGGGGCCC-S------
T ss_pred --CCCEEEECCCCcCh-----hhhhhCHHHHHHHHHHHHHHHHHHHHHh--CC---CcEEEEeccHHHHCCC-C------
Confidence 79999999997431 2345677889999999999999999876 21 2599999998643110 0
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
..+..+..+.++...|+.||++.+.+++.++.++ |+++++++||.|.+|+.
T Consensus 136 -----------------~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~ilrp~~v~g~~~ 186 (336)
T 2hun_A 136 -----------------KGSFTENDRLMPSSPYSATKAASDMLVLGWTRTY----NLNASITRCTNNYGPYQ 186 (336)
T ss_dssp -----------------SSCBCTTBCCCCCSHHHHHHHHHHHHHHHHHHHT----TCEEEEEEECEEESTTC
T ss_pred -----------------CCCcCCCCCCCCCCccHHHHHHHHHHHHHHHHHh----CCCEEEEeeeeeeCcCC
Confidence 0112222234556789999999999999998876 89999999999999875
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-20 Score=174.51 Aligned_cols=189 Identities=14% Similarity=0.082 Sum_probs=139.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhcc-CCCceEEE-EccCCCHHHHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-AKENYTIM-HLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~-~~~~v~~~-~~Dvs~~~~v~~~~~~~~~ 160 (350)
.++++++|||||+|+||+++++.|+++| ++|++++|+....+.+.+.+.. .+.++.++ .+|++|.++++++++
T Consensus 8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~---- 82 (342)
T 1y1p_A 8 LPEGSLVLVTGANGFVASHVVEQLLEHG-YKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIK---- 82 (342)
T ss_dssp SCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTT----
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHc----
Confidence 3578899999999999999999999999 5999999987666555444321 12467888 899999988776654
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
++|+||||||..... ++++..+++|+.++.++++++.+. .+ .++||++||.+.+....+...
T Consensus 83 ---~~d~vih~A~~~~~~--------~~~~~~~~~n~~g~~~ll~~~~~~---~~--~~~iv~~SS~~~~~~~~~~~~-- 144 (342)
T 1y1p_A 83 ---GAAGVAHIASVVSFS--------NKYDEVVTPAIGGTLNALRAAAAT---PS--VKRFVLTSSTVSALIPKPNVE-- 144 (342)
T ss_dssp ---TCSEEEECCCCCSCC--------SCHHHHHHHHHHHHHHHHHHHHTC---TT--CCEEEEECCGGGTCCCCTTCC--
T ss_pred ---CCCEEEEeCCCCCCC--------CCHHHHHHHHHHHHHHHHHHHHhC---CC--CcEEEEeccHHHhcCCCCCCC--
Confidence 699999999975321 246779999999999999988642 11 359999999876532100000
Q ss_pred CCCccccccccccCCCCCCCcccCC----------------CCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEee
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDG----------------GDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLY 304 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~ 304 (350)
..+..+. .+..+...|+.||++.+.+++.++.++ .. ++++++++
T Consensus 145 ------------------~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~~-~~~~~~~r 204 (342)
T 1y1p_A 145 ------------------GIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDEN-KP-HFTLNAVL 204 (342)
T ss_dssp ------------------CCEECTTCCCHHHHHHHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHH-CC-SSEEEEEE
T ss_pred ------------------CcccCccccCchhhhhhccccccccccchHHHHHHHHHHHHHHHHHHHhc-CC-CceEEEEc
Confidence 0000010 012356789999999999999999887 33 89999999
Q ss_pred CCcccCCccc
Q 018819 305 PGCIATTGLF 314 (350)
Q Consensus 305 PG~v~t~~~~ 314 (350)
||.+.+++..
T Consensus 205 p~~v~g~~~~ 214 (342)
T 1y1p_A 205 PNYTIGTIFD 214 (342)
T ss_dssp ESEEECCCSC
T ss_pred CCceECCCCC
Confidence 9999998653
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=175.95 Aligned_cols=184 Identities=15% Similarity=0.084 Sum_probs=139.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChh----HHHHHHHHhccC-CCceEEEEccCCCHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL----KAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDT 157 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~----~~~~~~~~l~~~-~~~v~~~~~Dvs~~~~v~~~~~~ 157 (350)
.++++++|||||+|+||+++++.|+++| +.|++++|+.. ..+.+.+.+... +.++.++.+|++|.+++.++++
T Consensus 24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~- 101 (352)
T 1sb8_A 24 PAQPKVWLITGVAGFIGSNLLETLLKLD-QKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACA- 101 (352)
T ss_dssp HHSCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHT-
T ss_pred CccCCeEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhc-
Confidence 4567899999999999999999999999 58999998642 333333333211 2468899999999998888766
Q ss_pred HHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCC
Q 018819 158 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237 (350)
Q Consensus 158 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~ 237 (350)
++|+||||||.... ..+.++++..+++|+.++.++++++.+. + .++||++||...+... .+
T Consensus 102 ------~~d~vih~A~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~a~~~~----~--~~~~v~~SS~~~~~~~-~~- 162 (352)
T 1sb8_A 102 ------GVDYVLHQAALGSV-----PRSINDPITSNATNIDGFLNMLIAARDA----K--VQSFTYAASSSTYGDH-PG- 162 (352)
T ss_dssp ------TCSEEEECCSCCCH-----HHHHHCHHHHHHHHTHHHHHHHHHHHHT----T--CSEEEEEEEGGGGTTC-CC-
T ss_pred ------CCCEEEECCcccCc-----hhhhhCHHHHHHHHHHHHHHHHHHHHHc----C--CCEEEEeccHHhcCCC-CC-
Confidence 69999999997432 1245678899999999999999998653 1 2599999998765321 00
Q ss_pred CCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.+..+..+..+...|+.+|++.+.+++.++.++ |+++++|+||.|.+|+.
T Consensus 163 ----------------------~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----g~~~~ilRp~~v~G~~~ 212 (352)
T 1sb8_A 163 ----------------------LPKVEDTIGKPLSPYAVTKYVNELYADVFSRCY----GFSTIGLRYFNVFGRRQ 212 (352)
T ss_dssp ----------------------SSBCTTCCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCCEEEEECCEECTTC
T ss_pred ----------------------CCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHc----CCCEEEEEECceeCcCC
Confidence 111222233456789999999999999998876 89999999999999864
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.4e-20 Score=175.12 Aligned_cols=202 Identities=13% Similarity=0.094 Sum_probs=136.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHH-----------------HHHHHhccCCCceEEEEccCC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE-----------------RAAKSAGMAKENYTIMHLDLA 146 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~-----------------~~~~~l~~~~~~v~~~~~Dvs 146 (350)
-++.++|||||+|.||.++++.|+++| +.|++++|...... ...+.....+.++.++.+|++
T Consensus 9 ~~~~~vlVTG~tGfIG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~Dl~ 87 (404)
T 1i24_A 9 HHGSRVMVIGGDGYCGWATALHLSKKN-YEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDIC 87 (404)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTT
T ss_pred cCCCeEEEeCCCcHHHHHHHHHHHhCC-CeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEECCCC
Confidence 367799999999999999999999999 58999988643211 111111112346889999999
Q ss_pred CHHHHHHHHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEec
Q 018819 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (350)
Q Consensus 147 ~~~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS 226 (350)
|.+++.++++.. ++|+||||||....... ..+.+++...+++|+.|+.++++++.+... ..+||++||
T Consensus 88 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~--~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~-----~~~~V~~SS 155 (404)
T 1i24_A 88 DFEFLAESFKSF-----EPDSVVHFGEQRSAPYS--MIDRSRAVYTQHNNVIGTLNVLFAIKEFGE-----ECHLVKLGT 155 (404)
T ss_dssp SHHHHHHHHHHH-----CCSEEEECCSCCCHHHH--TSCHHHHHHHHHHHHHHHHHHHHHHHHHCT-----TCEEEEECC
T ss_pred CHHHHHHHHhcc-----CCCEEEECCCCCCccch--hhCccchhhhHHHHHHHHHHHHHHHHHhCC-----CcEEEEeCc
Confidence 999999988865 69999999997532111 225677788999999999999999876421 139999999
Q ss_pred cCCCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCC
Q 018819 227 ITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPG 306 (350)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG 306 (350)
.+.+ +.... +.. ...... .. .........+..+...|+.||++.+.+++.++.++ |+++++|+||
T Consensus 156 ~~vy-g~~~~--~~~--E~~~~~--~~----~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----gi~~~ivrp~ 220 (404)
T 1i24_A 156 MGEY-GTPNI--DIE--EGYITI--TH----NGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW----GIRATDLNQG 220 (404)
T ss_dssp GGGG-CCCSS--CBC--SSEEEE--EE----TTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEEC
T ss_pred HHHh-CCCCC--CCC--cccccc--cc----ccccccccCCCCCCChhHHHHHHHHHHHHHHHHhc----CCeEEEEecc
Confidence 7543 21100 000 000000 00 00000000123455789999999999999988876 8999999999
Q ss_pred cccCCcc
Q 018819 307 CIATTGL 313 (350)
Q Consensus 307 ~v~t~~~ 313 (350)
.|.+|..
T Consensus 221 ~v~Gp~~ 227 (404)
T 1i24_A 221 VVYGVKT 227 (404)
T ss_dssp EEECSCC
T ss_pred eeeCCCC
Confidence 9999864
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-20 Score=175.51 Aligned_cols=189 Identities=14% Similarity=0.093 Sum_probs=136.0
Q ss_pred CEEEEEcCCCchHHHHHHHHH-HcCCcEEEEEecChhH---------HHHHH---HHhccC--CCc---eEEEEccCCCH
Q 018819 87 GSVIITGASSGLGLATAKALA-ETGKWHIIMACRDFLK---------AERAA---KSAGMA--KEN---YTIMHLDLASL 148 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la-~~Ga~~Vi~~~r~~~~---------~~~~~---~~l~~~--~~~---v~~~~~Dvs~~ 148 (350)
+++|||||+|+||+++++.|+ ++| ++|++++|+... .+.+. +.+... ..+ +.++.+|++|.
T Consensus 3 m~vlVTGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~ 81 (397)
T 1gy8_A 3 MRVLVCGGAGYIGSHFVRALLRDTN-HSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE 81 (397)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCC-CEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred CEEEEECCCCHHHHHHHHHHHHhCC-CEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCCH
Confidence 489999999999999999999 999 589999886433 23332 222211 124 88999999999
Q ss_pred HHHHHHHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccC
Q 018819 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (350)
Q Consensus 149 ~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~ 228 (350)
+++.+++++ ++++|+||||||.... ..+.++++..+++|+.++.++++++... + .++||++||.+
T Consensus 82 ~~~~~~~~~----~~~~d~vih~A~~~~~-----~~~~~~~~~~~~~Nv~g~~~ll~a~~~~----~--~~~iv~~SS~~ 146 (397)
T 1gy8_A 82 DFLNGVFTR----HGPIDAVVHMCAFLAV-----GESVRDPLKYYDNNVVGILRLLQAMLLH----K--CDKIIFSSSAA 146 (397)
T ss_dssp HHHHHHHHH----SCCCCEEEECCCCCCH-----HHHHHCHHHHHHHHHHHHHHHHHHHHHT----T--CCEEEEEEEGG
T ss_pred HHHHHHHHh----cCCCCEEEECCCccCc-----CcchhhHHHHHHHHhHHHHHHHHHHHHh----C--CCEEEEECCHH
Confidence 998887764 4569999999997532 1145678899999999999999986432 2 35999999965
Q ss_pred CCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcc
Q 018819 229 GNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI 308 (350)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v 308 (350)
.+ +...... . .....+..+..+..+...|+.||++.+.+++.++.++ |+++++++||.|
T Consensus 147 v~-g~~~~~~--------~--------~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~----gi~~~ilRp~~v 205 (397)
T 1gy8_A 147 IF-GNPTMGS--------V--------STNAEPIDINAKKSPESPYGESKLIAERMIRDCAEAY----GIKGICLRYFNA 205 (397)
T ss_dssp GT-BSCCC---------------------CCCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECEE
T ss_pred Hh-CCCCccc--------c--------cccccCcCccCCCCCCCchHHHHHHHHHHHHHHHHHH----CCcEEEEeccce
Confidence 43 2110000 0 0001122333334456789999999999999999887 899999999999
Q ss_pred cCCc
Q 018819 309 ATTG 312 (350)
Q Consensus 309 ~t~~ 312 (350)
.++.
T Consensus 206 ~G~~ 209 (397)
T 1gy8_A 206 CGAH 209 (397)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 8774
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-20 Score=163.36 Aligned_cols=175 Identities=14% Similarity=0.115 Sum_probs=125.8
Q ss_pred CEEEEEcCCCchHHHHHHHHH-HcCCcEEEEEecChh-HHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 87 GSVIITGASSGLGLATAKALA-ETGKWHIIMACRDFL-KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la-~~Ga~~Vi~~~r~~~-~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
|++|||||+||||+++++.|+ ++|+ +|++++|+.+ ..+++. ..+.++.++.+|++|+++++++++ +
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~g~-~V~~~~r~~~~~~~~~~----~~~~~~~~~~~D~~d~~~~~~~~~-------~ 73 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYTDM-HITLYGRQLKTRIPPEI----IDHERVTVIEGSFQNPGXLEQAVT-------N 73 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHCCC-EEEEEESSHHHHSCHHH----HTSTTEEEEECCTTCHHHHHHHHT-------T
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcCCc-eEEEEecCccccchhhc----cCCCceEEEECCCCCHHHHHHHHc-------C
Confidence 689999999999999999999 8995 9999999976 544432 124578999999999999988875 6
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
+|+||||||.. |+. ++.+++.|.+.+ .++||++||..+..+.
T Consensus 74 ~d~vv~~ag~~--------------------n~~-----~~~~~~~~~~~~--~~~iv~iSs~~~~~~~----------- 115 (221)
T 3r6d_A 74 AEVVFVGAMES--------------------GSD-----MASIVKALSRXN--IRRVIGVSMAGLSGEF----------- 115 (221)
T ss_dssp CSEEEESCCCC--------------------HHH-----HHHHHHHHHHTT--CCEEEEEEETTTTSCS-----------
T ss_pred CCEEEEcCCCC--------------------Chh-----HHHHHHHHHhcC--CCeEEEEeeceecCCC-----------
Confidence 89999999852 222 677777777765 4699999998876321
Q ss_pred cccccccccCCCCCCCcccCCCCCCchh----------chhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccc
Q 018819 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAK----------AYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~ 314 (350)
+... .|+.+|.+++.+.+ + .|+++++|+||++.++...
T Consensus 116 ------------------------~~~~~~~~~~~~~~~y~~~K~~~e~~~~----~----~~i~~~~vrpg~v~~~~~~ 163 (221)
T 3r6d_A 116 ------------------------PVALEKWTFDNLPISYVQGERQARNVLR----E----SNLNYTILRLTWLYNDPEX 163 (221)
T ss_dssp ------------------------CHHHHHHHHHTSCHHHHHHHHHHHHHHH----H----SCSEEEEEEECEEECCTTC
T ss_pred ------------------------CcccccccccccccHHHHHHHHHHHHHH----h----CCCCEEEEechhhcCCCCC
Confidence 1111 79999999877654 2 3899999999999887321
Q ss_pred ccchhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 315 REHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..... .... .......++++|+|+.++++
T Consensus 164 ~~~~~-~~~~-----~~~~~~~~~~~dvA~~~~~l 192 (221)
T 3r6d_A 164 TDYEL-IPEG-----AQFNDAQVSREAVVKAIFDI 192 (221)
T ss_dssp CCCEE-ECTT-----SCCCCCEEEHHHHHHHHHHH
T ss_pred cceee-ccCC-----ccCCCceeeHHHHHHHHHHH
Confidence 11100 0000 01112367888888877653
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=176.25 Aligned_cols=195 Identities=13% Similarity=0.139 Sum_probs=140.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHc-CCcEEEEEecCh--hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 88 SVIITGASSGLGLATAKALAET-GKWHIIMACRDF--LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~-Ga~~Vi~~~r~~--~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
++|||||+|+||+++++.|+++ | .+|++++|+. ...+.+ ..+. .+.++.++.+|++|.+++.+++++. +
T Consensus 2 kvlVTGasG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~~~~~~-~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~-----~ 73 (361)
T 1kew_A 2 KILITGGAGFIGSAVVRHIIKNTQ-DTVVNIDKLTYAGNLESL-SDIS-ESNRYNFEHADICDSAEITRIFEQY-----Q 73 (361)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHCS-CEEEEEECCCTTCCGGGG-TTTT-TCTTEEEEECCTTCHHHHHHHHHHH-----C
T ss_pred EEEEECCCchHhHHHHHHHHhcCC-CeEEEEecCCCCCchhhh-hhhh-cCCCeEEEECCCCCHHHHHHHHhhc-----C
Confidence 5899999999999999999998 6 5899988864 111111 1121 1346889999999999999988763 7
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCC---CCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSD---YPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~---~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
+|+||||||.... +.+.++++..+++|+.|+.++++++.+.|..-+ ..+++||++||.+.+... .. ..
T Consensus 74 ~d~vih~A~~~~~-----~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~-~~---~~ 144 (361)
T 1kew_A 74 PDAVMHLAAESHV-----DRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDL-PH---PD 144 (361)
T ss_dssp CSEEEECCSCCCH-----HHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCC-CC---GG
T ss_pred CCEEEECCCCcCh-----hhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCC-cc---cc
Confidence 9999999997431 234567889999999999999999998864311 001499999997643110 00 00
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
. . ....+..+..+..+.++...|+.||++.+.+++.++.++ |+++++|+||.|.+++.
T Consensus 145 ~-~---------~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----gi~~~~vrp~~v~G~~~ 202 (361)
T 1kew_A 145 E-V---------ENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTY----GLPTIVTNCSNNYGPYH 202 (361)
T ss_dssp G-S---------CTTSCCCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECEEESTTC
T ss_pred c-c---------cccccCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHh----CCcEEEEeeceeECCCC
Confidence 0 0 000001123333345567899999999999999999886 89999999999999875
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=5.9e-20 Score=172.35 Aligned_cols=184 Identities=12% Similarity=0.066 Sum_probs=131.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHH-HHHHHhc----cCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE-RAAKSAG----MAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~-~~~~~l~----~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+++|||||+|+||++++++|+++| ++|++++|+..... +..+.+. ..+.++.++.+|++|.+++.++++.+
T Consensus 2 ~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (372)
T 1db3_A 2 KVALITGVTGQDGSYLAEFLLEKG-YEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREV--- 77 (372)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHH---
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhc---
Confidence 689999999999999999999999 59999999754311 1111111 11346889999999999999998876
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++|+||||||.... ..+.++++..+++|+.++.++++++.+...+. .++||++||.+.+... .
T Consensus 78 --~~d~vih~A~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~---~~~iv~~SS~~v~g~~-~------ 140 (372)
T 1db3_A 78 --QPDEVYNLGAMSHV-----AVSFESPEYTADVDAMGTLRLLEAIRFLGLEK---KTRFYQASTSELYGLV-Q------ 140 (372)
T ss_dssp --CCSEEEECCCCCTT-----TTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTT---TCEEEEEEEGGGGTTC-C------
T ss_pred --CCCEEEECCcccCc-----cccccCHHHHHHHHHHHHHHHHHHHHHhCCCC---CcEEEEeCChhhhCCC-C------
Confidence 69999999997532 23445678899999999999999998764321 2599999997654211 0
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
..+..+..+..+...|+.||++.+.+++.++.++ |+.+..+.|..+..|.
T Consensus 141 -----------------~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~~r~~~~~gp~ 190 (372)
T 1db3_A 141 -----------------EIPQKETTPFYPRSPYAVAKLYAYWITVNYRESY----GMYACNGILFNHESPR 190 (372)
T ss_dssp -----------------SSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECCEECTT
T ss_pred -----------------CCCCCccCCCCCCChHHHHHHHHHHHHHHHHHHh----CCCeEEEEECCccCCC
Confidence 0112222334456789999999999999999886 7777777777666554
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-20 Score=176.43 Aligned_cols=180 Identities=16% Similarity=0.081 Sum_probs=130.2
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHH--cCCcEEEEEecChhHHHHH-------HHHhccCCCceEEEEccCCCHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAE--TGKWHIIMACRDFLKAERA-------AKSAGMAKENYTIMHLDLASLDSVR 152 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~--~Ga~~Vi~~~r~~~~~~~~-------~~~l~~~~~~v~~~~~Dvs~~~~v~ 152 (350)
+.++++++|||||+|+||+++++.|++ +| ++|++++|+....... .......+.++.++.+|++|.++++
T Consensus 6 ~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 84 (362)
T 3sxp_A 6 DELENQTILITGGAGFVGSNLAFHFQENHPK-AKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLR 84 (362)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHHCTT-SEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHH
T ss_pred hhcCCCEEEEECCCCHHHHHHHHHHHhhCCC-CeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHH
Confidence 356889999999999999999999999 89 5999999865411100 0011122346789999999999988
Q ss_pred HHHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCC
Q 018819 153 QFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTN 232 (350)
Q Consensus 153 ~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~ 232 (350)
++ ...++|+||||||.... +.++++..+++|+.++.++++++... +++||++||.+.+ +
T Consensus 85 ~~------~~~~~D~vih~A~~~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~~-------~~~~V~~SS~~vy-g 143 (362)
T 3sxp_A 85 RL------EKLHFDYLFHQAAVSDT-------TMLNQELVMKTNYQAFLNLLEIARSK-------KAKVIYASSAGVY-G 143 (362)
T ss_dssp HH------TTSCCSEEEECCCCCGG-------GCCCHHHHHHHHTHHHHHHHHHHHHT-------TCEEEEEEEGGGG-C
T ss_pred Hh------hccCCCEEEECCccCCc-------cccCHHHHHHHHHHHHHHHHHHHHHc-------CCcEEEeCcHHHh-C
Confidence 76 23589999999996421 34567889999999999999998432 2479999995543 2
Q ss_pred CCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 233 TLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
... .+..+..+..+...|+.||.+.+.+++.++.+ ++++.|.|+.|.+|.
T Consensus 144 ~~~------------------------~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~------~~~~~lR~~~v~Gp~ 193 (362)
T 3sxp_A 144 NTK------------------------APNVVGKNESPENVYGFSKLCMDEFVLSHSND------NVQVGLRYFNVYGPR 193 (362)
T ss_dssp SCC------------------------SSBCTTSCCCCSSHHHHHHHHHHHHHHHTTTT------SCEEEEEECSEESTT
T ss_pred CCC------------------------CCCCCCCCCCCCChhHHHHHHHHHHHHHHhcc------CCEEEEEeCceeCcC
Confidence 100 01222233455678999999998888766543 678889998888876
Q ss_pred c
Q 018819 313 L 313 (350)
Q Consensus 313 ~ 313 (350)
.
T Consensus 194 ~ 194 (362)
T 3sxp_A 194 E 194 (362)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-20 Score=169.78 Aligned_cols=164 Identities=18% Similarity=0.165 Sum_probs=126.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
|++|||||+|+||++++++|+++| ++|++++|+.... + ..++.++.+|++|++++.++++ .+|
T Consensus 3 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~------~---~~~~~~~~~Dl~d~~~~~~~~~-------~~d 65 (267)
T 3ay3_A 3 NRLLVTGAAGGVGSAIRPHLGTLA-HEVRLSDIVDLGA------A---EAHEEIVACDLADAQAVHDLVK-------DCD 65 (267)
T ss_dssp EEEEEESTTSHHHHHHGGGGGGTE-EEEEECCSSCCCC------C---CTTEEECCCCTTCHHHHHHHHT-------TCS
T ss_pred ceEEEECCCCHHHHHHHHHHHhCC-CEEEEEeCCCccc------c---CCCccEEEccCCCHHHHHHHHc-------CCC
Confidence 479999999999999999999999 6999999975421 1 1357889999999999888765 599
Q ss_pred EEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccc
Q 018819 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (350)
Q Consensus 167 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (350)
+||||||... .+.++..+++|+.++.++++++.+. + .++||++||...+... +.
T Consensus 66 ~vi~~a~~~~---------~~~~~~~~~~n~~~~~~l~~a~~~~----~--~~~iv~~SS~~~~~~~-~~---------- 119 (267)
T 3ay3_A 66 GIIHLGGVSV---------ERPWNDILQANIIGAYNLYEAARNL----G--KPRIVFASSNHTIGYY-PR---------- 119 (267)
T ss_dssp EEEECCSCCS---------CCCHHHHHHHTHHHHHHHHHHHHHT----T--CCEEEEEEEGGGSTTS-BT----------
T ss_pred EEEECCcCCC---------CCCHHHHHHHHHHHHHHHHHHHHHh----C--CCEEEEeCCHHHhCCC-CC----------
Confidence 9999999741 2346788999999999999998642 2 3599999998765321 00
Q ss_pred cccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCccc
Q 018819 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA 309 (350)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~ 309 (350)
..++.+..+..+...|+.+|++.+.+++.++.+. |+++++|+||++.
T Consensus 120 ------------~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----gi~~~~lrp~~v~ 166 (267)
T 3ay3_A 120 ------------TTRIDTEVPRRPDSLYGLSKCFGEDLASLYYHKF----DIETLNIRIGSCF 166 (267)
T ss_dssp ------------TSCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHTT----CCCEEEEEECBCS
T ss_pred ------------CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHc----CCCEEEEeceeec
Confidence 0112222334456789999999999998876543 8999999999984
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-20 Score=174.02 Aligned_cols=185 Identities=12% Similarity=0.053 Sum_probs=139.7
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccC-----CCceEEEEccCCCHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-----KENYTIMHLDLASLDSVRQFVD 156 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~-----~~~v~~~~~Dvs~~~~v~~~~~ 156 (350)
+.+.++++|||||+|+||+++++.|+++| +.|++++|+..........+... ..++.++.+|++|.+++.++++
T Consensus 21 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 99 (351)
T 3ruf_A 21 LIFSPKTWLITGVAGFIGSNLLEKLLKLN-QVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMK 99 (351)
T ss_dssp HHHSCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTT
T ss_pred CCCCCCeEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhc
Confidence 34678899999999999999999999999 59999998643322222222111 0468999999999998888766
Q ss_pred HHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCC
Q 018819 157 TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236 (350)
Q Consensus 157 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~ 236 (350)
++|+|||+||.... ..+.+++...+++|+.++.++++++...- .++||++||...+...
T Consensus 100 -------~~d~Vih~A~~~~~-----~~~~~~~~~~~~~nv~~~~~ll~a~~~~~------~~~~v~~SS~~vyg~~--- 158 (351)
T 3ruf_A 100 -------GVDHVLHQAALGSV-----PRSIVDPITTNATNITGFLNILHAAKNAQ------VQSFTYAASSSTYGDH--- 158 (351)
T ss_dssp -------TCSEEEECCCCCCH-----HHHHHCHHHHHHHHTHHHHHHHHHHHHTT------CSEEEEEEEGGGGTTC---
T ss_pred -------CCCEEEECCccCCc-----chhhhCHHHHHHHHHHHHHHHHHHHHHcC------CCEEEEEecHHhcCCC---
Confidence 69999999997432 23456678899999999999999876431 2499999998654211
Q ss_pred CCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 237 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
...+..+..+..+...|+.+|.+.+.+++.++.++ |++++.++||.|.+|..
T Consensus 159 ---------------------~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----g~~~~ilRp~~v~G~~~ 210 (351)
T 3ruf_A 159 ---------------------PALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTY----GFKTIGLRYFNVFGRRQ 210 (351)
T ss_dssp ---------------------CCSSBCTTCCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCCEEEEECSEESTTC
T ss_pred ---------------------CCCCCccCCCCCCCChhHHHHHHHHHHHHHHHHHh----CCCEEEEeeCceeCcCC
Confidence 01122233334556789999999999999998876 89999999999998754
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.4e-20 Score=172.36 Aligned_cols=189 Identities=13% Similarity=0.071 Sum_probs=132.8
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCC-cEEEEEecChhH-HHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLK-AERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 158 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga-~~Vi~~~r~~~~-~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~ 158 (350)
++.++++++|||||+|+||.++++.|+++|. ..|+..+|.... .....+.+ ....++.++.+|++|.+++.++++..
T Consensus 19 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~ 97 (346)
T 4egb_A 19 YFQSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSI-QDHPNYYFVKGEIQNGELLEHVIKER 97 (346)
T ss_dssp -----CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTT-TTCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred ccccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhh-ccCCCeEEEEcCCCCHHHHHHHHhhc
Confidence 4456788999999999999999999999993 266666665311 11111111 11247899999999999999998864
Q ss_pred HHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCC
Q 018819 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (350)
Q Consensus 159 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (350)
++|+|||+||.... ..+.++++..+++|+.++.++++++... + .++||++||...+... .
T Consensus 98 -----~~d~Vih~A~~~~~-----~~~~~~~~~~~~~nv~~~~~ll~a~~~~----~--~~~~v~~SS~~vy~~~-~--- 157 (346)
T 4egb_A 98 -----DVQVIVNFAAESHV-----DRSIENPIPFYDTNVIGTVTLLELVKKY----P--HIKLVQVSTDEVYGSL-G--- 157 (346)
T ss_dssp -----TCCEEEECCCCC--------------CHHHHHHTHHHHHHHHHHHHS----T--TSEEEEEEEGGGGCCC-C---
T ss_pred -----CCCEEEECCcccch-----hhhhhCHHHHHHHHHHHHHHHHHHHHhc----C--CCEEEEeCchHHhCCC-C---
Confidence 69999999998543 2245667889999999999999988653 1 2489999998654211 0
Q ss_pred CCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
...++.+..+..+...|+.+|.+.+.+++.++.++ |+++++++||.|.+|..
T Consensus 158 -------------------~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----g~~~~ilRp~~v~G~~~ 209 (346)
T 4egb_A 158 -------------------KTGRFTEETPLAPNSPYSSSKASADMIALAYYKTY----QLPVIVTRCSNNYGPYQ 209 (346)
T ss_dssp -------------------SSCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECEEESTTC
T ss_pred -------------------cCCCcCCCCCCCCCChhHHHHHHHHHHHHHHHHHh----CCCEEEEeecceeCcCC
Confidence 01122333344566789999999999999998876 89999999999998864
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=8.7e-21 Score=175.46 Aligned_cols=175 Identities=14% Similarity=0.099 Sum_probs=123.3
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
+..++++++|||||+|+||+++++.|+++| ++|++++|+.....+..+.+ .++.++.+|++|.+++.++++++
T Consensus 15 ~~~~~~~~vlVTGasG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~l----~~v~~~~~Dl~d~~~~~~~~~~~-- 87 (330)
T 2pzm_A 15 VPRGSHMRILITGGAGCLGSNLIEHWLPQG-HEILVIDNFATGKREVLPPV----AGLSVIEGSVTDAGLLERAFDSF-- 87 (330)
T ss_dssp CSTTTCCEEEEETTTSHHHHHHHHHHGGGT-CEEEEEECCSSSCGGGSCSC----TTEEEEECCTTCHHHHHHHHHHH--
T ss_pred cccCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCccchhhhhcc----CCceEEEeeCCCHHHHHHHHhhc--
Confidence 346788999999999999999999999999 59999999643321111111 36888999999999999988876
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
++|+||||||.... . +.++++ +++|+.++.++++++... + .++||++||.+.+... .+.
T Consensus 88 ---~~D~vih~A~~~~~-~-----~~~~~~--~~~N~~~~~~l~~a~~~~----~--~~~iV~~SS~~~~~~~-~~~--- 146 (330)
T 2pzm_A 88 ---KPTHVVHSAAAYKD-P-----DDWAED--AATNVQGSINVAKAASKA----G--VKRLLNFQTALCYGRP-ATV--- 146 (330)
T ss_dssp ---CCSEEEECCCCCSC-T-----TCHHHH--HHHHTHHHHHHHHHHHHH----T--CSEEEEEEEGGGGCSC-SSS---
T ss_pred ---CCCEEEECCccCCC-c-----cccChh--HHHHHHHHHHHHHHHHHc----C--CCEEEEecCHHHhCCC-ccC---
Confidence 69999999997532 1 345666 999999999999998743 1 3599999998664211 000
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCC
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~ 311 (350)
..+..+.. .+...|+.+|++.+.+++.+ +++...|.|+.+..|
T Consensus 147 ------------------~~~~~E~~--~~~~~Y~~sK~~~e~~~~~~--------~~~~~~iR~~~v~gp 189 (330)
T 2pzm_A 147 ------------------PIPIDSPT--APFTSYGISKTAGEAFLMMS--------DVPVVSLRLANVTGP 189 (330)
T ss_dssp ------------------SBCTTCCC--CCCSHHHHHHHHHHHHHHTC--------SSCEEEEEECEEECT
T ss_pred ------------------CCCcCCCC--CCCChHHHHHHHHHHHHHHc--------CCCEEEEeeeeeECc
Confidence 00111111 24568999999998888755 334444444444444
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=9.1e-20 Score=169.54 Aligned_cols=170 Identities=11% Similarity=-0.021 Sum_probs=129.6
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
....+++++|||||+|+||.++++.|+++| +.|++++|+... .++.++.+|++|.+++.++++
T Consensus 14 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~------------~~~~~~~~Dl~d~~~~~~~~~---- 76 (347)
T 4id9_A 14 LVPRGSHMILVTGSAGRVGRAVVAALRTQG-RTVRGFDLRPSG------------TGGEEVVGSLEDGQALSDAIM---- 76 (347)
T ss_dssp -------CEEEETTTSHHHHHHHHHHHHTT-CCEEEEESSCCS------------SCCSEEESCTTCHHHHHHHHT----
T ss_pred ccccCCCEEEEECCCChHHHHHHHHHHhCC-CEEEEEeCCCCC------------CCccEEecCcCCHHHHHHHHh----
Confidence 346688899999999999999999999999 589999997543 357889999999999888776
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
++|+|||+|+.... +.+.++..+++|+.++.++++++... + .++||++||...+-...
T Consensus 77 ---~~d~vih~A~~~~~-------~~~~~~~~~~~nv~~~~~ll~a~~~~----~--~~~~V~~SS~~vyg~~~------ 134 (347)
T 4id9_A 77 ---GVSAVLHLGAFMSW-------APADRDRMFAVNVEGTRRLLDAASAA----G--VRRFVFASSGEVYPENR------ 134 (347)
T ss_dssp ---TCSEEEECCCCCCS-------SGGGHHHHHHHHTHHHHHHHHHHHHT----T--CSEEEEEEEGGGTTTTS------
T ss_pred ---CCCEEEECCcccCc-------chhhHHHHHHHHHHHHHHHHHHHHHc----C--CCeEEEECCHHHhCCCC------
Confidence 69999999997532 34556899999999999999987542 2 25999999976542100
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCccc
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA 309 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~ 309 (350)
....+..+..+..+...|+.+|.+.+.+++.++.+. |+++++++|+.|.
T Consensus 135 ----------------~~~~~~~E~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----~~~~~ilRp~~v~ 183 (347)
T 4id9_A 135 ----------------PEFLPVTEDHPLCPNSPYGLTKLLGEELVRFHQRSG----AMETVILRFSHTQ 183 (347)
T ss_dssp ----------------CSSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHS----SSEEEEEEECEEE
T ss_pred ----------------CCCCCcCCCCCCCCCChHHHHHHHHHHHHHHHHHhc----CCceEEEccceEe
Confidence 011123333345567789999999999999888775 8999999999998
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-20 Score=169.81 Aligned_cols=177 Identities=15% Similarity=0.142 Sum_probs=131.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
++|||||+|+||+++++.|+++| ++|++++|...... +.+ ..++.++.+|++|+++++++++.. ++|+
T Consensus 2 ~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~---~~~---~~~~~~~~~Dl~~~~~~~~~~~~~-----~~d~ 69 (311)
T 2p5y_A 2 RVLVTGGAGFIGSHIVEDLLARG-LEVAVLDNLATGKR---ENV---PKGVPFFRVDLRDKEGVERAFREF-----RPTH 69 (311)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTT-CEEEEECCCSSCCG---GGS---CTTCCEECCCTTCHHHHHHHHHHH-----CCSE
T ss_pred EEEEEeCCcHHHHHHHHHHHHCC-CEEEEEECCCcCch---hhc---ccCeEEEECCCCCHHHHHHHHHhc-----CCCE
Confidence 69999999999999999999999 58998888432110 111 135678899999999999888753 6999
Q ss_pred EEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcccc
Q 018819 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (350)
Q Consensus 168 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (350)
+||+|+.... ..+.++++..+++|+.|++++++++... + .++||++||..+..+....
T Consensus 70 vi~~a~~~~~-----~~~~~~~~~~~~~N~~g~~~l~~a~~~~----~--~~~iv~~SS~~~~~g~~~~----------- 127 (311)
T 2p5y_A 70 VSHQAAQASV-----KVSVEDPVLDFEVNLLGGLNLLEACRQY----G--VEKLVFASTGGAIYGEVPE----------- 127 (311)
T ss_dssp EEECCSCCCH-----HHHHHCHHHHHHHHTHHHHHHHHHHHHT----T--CSEEEEEEEHHHHHCCCCT-----------
T ss_pred EEECccccCc-----hhhhhCHHHHHHHHHHHHHHHHHHHHHh----C--CCEEEEeCCChhhcCCCCC-----------
Confidence 9999997432 2345678899999999999999987532 1 2599999998333221000
Q ss_pred ccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
..+..+..+..+...|+.||++.+.+++.++.++ |+++++++||.|.+|+.
T Consensus 128 -----------~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~lrp~~v~Gp~~ 178 (311)
T 2p5y_A 128 -----------GERAEETWPPRPKSPYAASKAAFEHYLSVYGQSY----GLKWVSLRYGNVYGPRQ 178 (311)
T ss_dssp -----------TCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECEEECTTC
T ss_pred -----------CCCcCCCCCCCCCChHHHHHHHHHHHHHHHHHHc----CCCEEEEeeccccCcCC
Confidence 0011122223456789999999999999998876 89999999999999864
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.2e-20 Score=162.24 Aligned_cols=199 Identities=13% Similarity=0.106 Sum_probs=138.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
+++|||||+|+||+++++.|+++| ++|++++|+...... ...++.++.+|++|.+++.++++ ++|
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~-------~~~~~~~~~~Dl~d~~~~~~~~~-------~~d 69 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALNRG-FEVTAVVRHPEKIKI-------ENEHLKVKKADVSSLDEVCEVCK-------GAD 69 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHTTT-CEEEEECSCGGGCCC-------CCTTEEEECCCTTCHHHHHHHHT-------TCS
T ss_pred CEEEEEcCCchHHHHHHHHHHHCC-CEEEEEEcCcccchh-------ccCceEEEEecCCCHHHHHHHhc-------CCC
Confidence 589999999999999999999999 599999998654321 12578999999999999988876 589
Q ss_pred EEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccc
Q 018819 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (350)
Q Consensus 167 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (350)
+||||||.... . ...+++|+.++.++++++... + .++||++||.....+. ++
T Consensus 70 ~vi~~a~~~~~--------~---~~~~~~n~~~~~~l~~~~~~~----~--~~~~v~~Ss~~~~~~~-~~---------- 121 (227)
T 3dhn_A 70 AVISAFNPGWN--------N---PDIYDETIKVYLTIIDGVKKA----G--VNRFLMVGGAGSLFIA-PG---------- 121 (227)
T ss_dssp EEEECCCC-----------------CCSHHHHHHHHHHHHHHHT----T--CSEEEEECCSTTSEEE-TT----------
T ss_pred EEEEeCcCCCC--------C---hhHHHHHHHHHHHHHHHHHHh----C--CCEEEEeCChhhccCC-CC----------
Confidence 99999986421 1 126889999999999887543 2 2499999998765431 00
Q ss_pred cccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhhhh
Q 018819 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFP 326 (350)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~ 326 (350)
...+..+..+...|+.+|.+.+.+.+.++.+ .|+++++++||.+.++........... ..
T Consensus 122 --------------~~~~~~~~~p~~~Y~~sK~~~e~~~~~~~~~----~~~~~~ilrp~~v~g~~~~~~~~~~~~--~~ 181 (227)
T 3dhn_A 122 --------------LRLMDSGEVPENILPGVKALGEFYLNFLMKE----KEIDWVFFSPAADMRPGVRTGRYRLGK--DD 181 (227)
T ss_dssp --------------EEGGGTTCSCGGGHHHHHHHHHHHHHTGGGC----CSSEEEEEECCSEEESCCCCCCCEEES--SB
T ss_pred --------------CccccCCcchHHHHHHHHHHHHHHHHHHhhc----cCccEEEEeCCcccCCCccccceeecC--CC
Confidence 0001112335678999999988877766544 499999999999988754221111100 00
Q ss_pred hhHHhhhcCccchhhhhhhccc
Q 018819 327 PFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 327 ~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
.+.......++.++++|+.++.
T Consensus 182 ~~~~~~~~~~i~~~Dva~ai~~ 203 (227)
T 3dhn_A 182 MIVDIVGNSHISVEDYAAAMID 203 (227)
T ss_dssp CCCCTTSCCEEEHHHHHHHHHH
T ss_pred cccCCCCCcEEeHHHHHHHHHH
Confidence 0000001346788998888764
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=9.7e-20 Score=168.43 Aligned_cols=184 Identities=15% Similarity=0.021 Sum_probs=135.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHH-HHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE-RAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~-~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
.++++|||||+|+||.++++.|+++| +.|++++|+..... ...+.+. .+.++.++.+|++|.+++.++++.+
T Consensus 13 ~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~----- 85 (335)
T 1rpn_A 13 MTRSALVTGITGQDGAYLAKLLLEKG-YRVHGLVARRSSDTRWRLRELG-IEGDIQYEDGDMADACSVQRAVIKA----- 85 (335)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCHHHHHTT-CGGGEEEEECCTTCHHHHHHHHHHH-----
T ss_pred cCCeEEEECCCChHHHHHHHHHHHCC-CeEEEEeCCCccccccchhhcc-ccCceEEEECCCCCHHHHHHHHHHc-----
Confidence 56789999999999999999999999 59999998754311 1112221 2346889999999999999988876
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCC
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (350)
++|+||||||.... ..+.++++..+++|+.++.++++++.+.-. .++||++||.+.+... .
T Consensus 86 ~~d~Vih~A~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-----~~~~v~~SS~~v~g~~-~-------- 146 (335)
T 1rpn_A 86 QPQEVYNLAAQSFV-----GASWNQPVTTGVVDGLGVTHLLEAIRQFSP-----ETRFYQASTSEMFGLI-Q-------- 146 (335)
T ss_dssp CCSEEEECCSCCCH-----HHHTTSHHHHHHHHTHHHHHHHHHHHHHCT-----TSEEEEEEEGGGGCSC-S--------
T ss_pred CCCEEEECccccch-----hhhhhChHHHHHHHHHHHHHHHHHHHHhCC-----CCeEEEEeCHHHhCCC-C--------
Confidence 69999999997422 112345778999999999999999865411 1499999997654211 0
Q ss_pred ccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
..+..+..+..+...|+.+|.+.+.+++.++.++ |+++..+.|+.+.+|..
T Consensus 147 ---------------~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~----~~~~~i~r~~~v~Gp~~ 197 (335)
T 1rpn_A 147 ---------------AERQDENTPFYPRSPYGVAKLYGHWITVNYRESF----GLHASSGILFNHESPLR 197 (335)
T ss_dssp ---------------SSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECCEECTTS
T ss_pred ---------------CCCCCcccCCCCCChhHHHHHHHHHHHHHHHHHc----CCcEEEEeeCcccCCCC
Confidence 0112222233456789999999999999998876 78999999999887754
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-19 Score=170.77 Aligned_cols=184 Identities=13% Similarity=0.062 Sum_probs=135.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhH-----HHHHHHHhcc-CCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK-----AERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~-----~~~~~~~l~~-~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
+++|||||+|+||+++++.|+++| +.|++++|+... .+.+.+.... .+.++.++.+|++|.+++.++++.+
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 101 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKG-YEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEV-- 101 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHH--
T ss_pred cEEEEECCCchHHHHHHHHHHHCC-CEEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhc--
Confidence 689999999999999999999999 599999887432 1111110000 2346888999999999999998876
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
++|+||||||.... ..+.++++..+++|+.++.++++++.+...+. .++||++||.+.+... .
T Consensus 102 ---~~d~vih~A~~~~~-----~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~---~~~iv~~SS~~~~~~~-~----- 164 (375)
T 1t2a_A 102 ---KPTEIYNLGAQSHV-----KISFDLAEYTADVDGVGTLRLLDAVKTCGLIN---SVKFYQASTSELYGKV-Q----- 164 (375)
T ss_dssp ---CCSEEEECCSCCCH-----HHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTT---TCEEEEEEEGGGTCSC-S-----
T ss_pred ---CCCEEEECCCcccc-----cccccCHHHHHHHHHHHHHHHHHHHHHhCCCc---cceEEEecchhhhCCC-C-----
Confidence 69999999997432 12456788999999999999999987754321 2599999998765211 0
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
..+..+..+..+...|+.+|++.+.+++.++.++ ++.+..+.|+.+..|.
T Consensus 165 ------------------~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~i~r~~~~~gp~ 214 (375)
T 1t2a_A 165 ------------------EIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAY----NLFAVNGILFNHESPR 214 (375)
T ss_dssp ------------------SSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECCEECTT
T ss_pred ------------------CCCCCccCCCCCCChhHHHHHHHHHHHHHHHHHh----CCCEEEEecccccCCC
Confidence 0112222233456789999999999999998876 7898889888877664
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=8.4e-20 Score=161.73 Aligned_cols=202 Identities=17% Similarity=0.118 Sum_probs=137.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHc--CCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 85 RKGSVIITGASSGLGLATAKALAET--GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~--Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
+++++|||||+|+||++++++|+++ | ++|++++|+....+.. +.++.++.+|++|.+++.++++
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g-~~V~~~~r~~~~~~~~-------~~~~~~~~~D~~d~~~~~~~~~------ 68 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDK-FVAKGLVRSAQGKEKI-------GGEADVFIGDITDADSINPAFQ------ 68 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTT-CEEEEEESCHHHHHHT-------TCCTTEEECCTTSHHHHHHHHT------
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCC-cEEEEEEcCCCchhhc-------CCCeeEEEecCCCHHHHHHHHc------
Confidence 4679999999999999999999999 7 5999999987554332 2457789999999999888775
Q ss_pred CCCcEEEEccccCCCCCC--------CCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAK--------EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTL 234 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~--------~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~ 234 (350)
.+|+||||||....... ..+...++++..+++|+.++.++++++...- .++||++||..+.....
T Consensus 69 -~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~------~~~iv~~SS~~~~~~~~ 141 (253)
T 1xq6_A 69 -GIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAG------VKHIVVVGSMGGTNPDH 141 (253)
T ss_dssp -TCSEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHT------CSEEEEEEETTTTCTTC
T ss_pred -CCCEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcC------CCEEEEEcCccCCCCCC
Confidence 58999999997532110 1122334556788999999999999876541 25999999987642100
Q ss_pred CCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccc
Q 018819 235 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (350)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~ 314 (350)
+. . .-+...|+.+|.+.+.+++ + .|+++++|+||++.++...
T Consensus 142 --------------------------~~---~-~~~~~~y~~sK~~~e~~~~----~----~~i~~~~vrpg~v~~~~~~ 183 (253)
T 1xq6_A 142 --------------------------PL---N-KLGNGNILVWKRKAEQYLA----D----SGTPYTIIRAGGLLDKEGG 183 (253)
T ss_dssp --------------------------GG---G-GGGGCCHHHHHHHHHHHHH----T----SSSCEEEEEECEEECSCSS
T ss_pred --------------------------cc---c-cccchhHHHHHHHHHHHHH----h----CCCceEEEecceeecCCcc
Confidence 00 0 0112357789999877664 2 4899999999999987532
Q ss_pred ccchhhHHhhhhhhHHhhhcCccchhhhhhhccc
Q 018819 315 REHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
.... +.....+.+. ....+++++++|+.+++
T Consensus 184 ~~~~-~~~~~~~~~~--~~~~~~~~~Dva~~~~~ 214 (253)
T 1xq6_A 184 VREL-LVGKDDELLQ--TDTKTVPRADVAEVCIQ 214 (253)
T ss_dssp SSCE-EEESTTGGGG--SSCCEEEHHHHHHHHHH
T ss_pred hhhh-hccCCcCCcC--CCCcEEcHHHHHHHHHH
Confidence 1000 0000000110 01346788888887754
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-20 Score=162.18 Aligned_cols=181 Identities=16% Similarity=0.238 Sum_probs=131.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCC-HHHHHHHHHHHHHcCCCCc
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS-LDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~-~~~v~~~~~~~~~~~g~id 166 (350)
++|||||+|+||+++++.|+++| ++|++++|+.+..+.. .++.++.+|++| .+++.++++ ++|
T Consensus 2 ~ilItGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~--------~~~~~~~~D~~d~~~~~~~~~~-------~~d 65 (219)
T 3dqp_A 2 KIFIVGSTGRVGKSLLKSLSTTD-YQIYAGARKVEQVPQY--------NNVKAVHFDVDWTPEEMAKQLH-------GMD 65 (219)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSS-CEEEEEESSGGGSCCC--------TTEEEEECCTTSCHHHHHTTTT-------TCS
T ss_pred eEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCccchhhc--------CCceEEEecccCCHHHHHHHHc-------CCC
Confidence 69999999999999999999999 5999999987543221 468999999999 888877664 699
Q ss_pred EEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccc
Q 018819 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (350)
Q Consensus 167 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (350)
+||||||.... ..+++|+.++.++++++.. .+ .++||++||..+....
T Consensus 66 ~vi~~ag~~~~-------------~~~~~n~~~~~~l~~a~~~----~~--~~~iv~~SS~~~~~~~------------- 113 (219)
T 3dqp_A 66 AIINVSGSGGK-------------SLLKVDLYGAVKLMQAAEK----AE--VKRFILLSTIFSLQPE------------- 113 (219)
T ss_dssp EEEECCCCTTS-------------SCCCCCCHHHHHHHHHHHH----TT--CCEEEEECCTTTTCGG-------------
T ss_pred EEEECCcCCCC-------------CcEeEeHHHHHHHHHHHHH----hC--CCEEEEECcccccCCC-------------
Confidence 99999998532 1688999999999988743 22 2599999998665321
Q ss_pred cccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhhhh
Q 018819 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFP 326 (350)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~ 326 (350)
++.+ .+......|+.+|.+.+.+.+ . ..|+++++|+||++.++...... .+.
T Consensus 114 --------------~~~e-~~~~~~~~Y~~sK~~~e~~~~---~----~~~i~~~ilrp~~v~g~~~~~~~-~~~----- 165 (219)
T 3dqp_A 114 --------------KWIG-AGFDALKDYYIAKHFADLYLT---K----ETNLDYTIIQPGALTEEEATGLI-DIN----- 165 (219)
T ss_dssp --------------GCCS-HHHHHTHHHHHHHHHHHHHHH---H----SCCCEEEEEEECSEECSCCCSEE-EES-----
T ss_pred --------------cccc-cccccccHHHHHHHHHHHHHH---h----ccCCcEEEEeCceEecCCCCCcc-ccC-----
Confidence 0000 012346789999999888775 2 34999999999999987532211 100
Q ss_pred hhHHhhhcCccchhhhhhhccc
Q 018819 327 PFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 327 ~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
.....+++++++|+.++.
T Consensus 166 ----~~~~~~i~~~Dva~~i~~ 183 (219)
T 3dqp_A 166 ----DEVSASNTIGDVADTIKE 183 (219)
T ss_dssp ----SSCCCCEEHHHHHHHHHH
T ss_pred ----CCcCCcccHHHHHHHHHH
Confidence 112345677777776654
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=9.3e-20 Score=169.44 Aligned_cols=189 Identities=13% Similarity=0.096 Sum_probs=135.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHc--CCcEEEEEecChhH-HHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 87 GSVIITGASSGLGLATAKALAET--GKWHIIMACRDFLK-AERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~--Ga~~Vi~~~r~~~~-~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
+++|||||+|+||.++++.|+++ | +.|++++|+... ..+....+. +.++.++.+|++|.+++.++++
T Consensus 5 ~~vlVTGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~------- 74 (348)
T 1oc2_A 5 KNIIVTGGAGFIGSNFVHYVYNNHPD-VHVTVLDKLTYAGNKANLEAIL--GDRVELVVGDIADAELVDKLAA------- 74 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHHCTT-CEEEEEECCCTTCCGGGTGGGC--SSSEEEEECCTTCHHHHHHHHT-------
T ss_pred cEEEEeCCccHHHHHHHHHHHHhCCC-CEEEEEeCCCCCCChhHHhhhc--cCCeEEEECCCCCHHHHHHHhh-------
Confidence 58999999999999999999999 7 589999886421 111111221 2468899999999998888765
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCC
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (350)
.+|+||||||.... +.+.++++..+++|+.++.++++++.+. +++||++||.+.+... ....+.
T Consensus 75 ~~d~vih~A~~~~~-----~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-------~~~~v~~SS~~vyg~~-~~~~~~--- 138 (348)
T 1oc2_A 75 KADAIVHYAAESHN-----DNSLNDPSPFIHTNFIGTYTLLEAARKY-------DIRFHHVSTDEVYGDL-PLREDL--- 138 (348)
T ss_dssp TCSEEEECCSCCCH-----HHHHHCCHHHHHHHTHHHHHHHHHHHHH-------TCEEEEEEEGGGGCCB-CCGGGS---
T ss_pred cCCEEEECCcccCc-----cchhhCHHHHHHHHHHHHHHHHHHHHHh-------CCeEEEecccceeCCC-cccccc---
Confidence 46999999997431 2245667889999999999999998875 1399999998643211 000000
Q ss_pred ccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
+........++.+..+..+...|+.||++.+.+++.++.++ |+++++++||.|.+++.
T Consensus 139 --------~~~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----gi~~~ilrp~~v~G~~~ 196 (348)
T 1oc2_A 139 --------PGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSF----GVKATISNCSNNYGPYQ 196 (348)
T ss_dssp --------TTTTCSTTSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECCEESTTC
T ss_pred --------cccccccCCCcCCCCCCCCCCccHHHHHHHHHHHHHHHHHh----CCCEEEEeeceeeCCCC
Confidence 00000011233333445566799999999999999998886 89999999999999865
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-20 Score=170.65 Aligned_cols=173 Identities=13% Similarity=0.123 Sum_probs=132.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
+++|||||+|+||+++++.|+++| +.|++++|+....... ....+.++.+|++|.+ +.++++ . |
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~------~~~~~~~~~~Dl~d~~-~~~~~~-------~-d 64 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELG-YEVVVVDNLSSGRREF------VNPSAELHVRDLKDYS-WGAGIK-------G-D 64 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEECCCSSCCGGG------SCTTSEEECCCTTSTT-TTTTCC-------C-S
T ss_pred CEEEEECCCChHHHHHHHHHHhCC-CEEEEEeCCCCCchhh------cCCCceEEECccccHH-HHhhcC-------C-C
Confidence 379999999999999999999999 5999999875432211 1346789999999987 554432 3 9
Q ss_pred EEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccc
Q 018819 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (350)
Q Consensus 167 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (350)
+||||||.... ..+.++++..+++|+.++.++++++...- .++||++||...+...
T Consensus 65 ~vih~A~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~a~~~~~------~~~iv~~SS~~vyg~~------------- 120 (312)
T 3ko8_A 65 VVFHFAANPEV-----RLSTTEPIVHFNENVVATFNVLEWARQTG------VRTVVFASSSTVYGDA------------- 120 (312)
T ss_dssp EEEECCSSCSS-----SGGGSCHHHHHHHHHHHHHHHHHHHHHHT------CCEEEEEEEGGGGCSC-------------
T ss_pred EEEECCCCCCc-----hhhhhCHHHHHHHHHHHHHHHHHHHHHcC------CCEEEEeCcHHHhCCC-------------
Confidence 99999996422 34566788999999999999999985431 2499999998754211
Q ss_pred cccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccc
Q 018819 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (350)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~ 314 (350)
...+..+..+..+...|+.||.+.+.+++.++.++ |+++++++||.|.+|+..
T Consensus 121 -----------~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~----g~~~~~lrp~~v~g~~~~ 173 (312)
T 3ko8_A 121 -----------DVIPTPEEEPYKPISVYGAAKAAGEVMCATYARLF----GVRCLAVRYANVVGPRLR 173 (312)
T ss_dssp -----------SSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECEEECTTCC
T ss_pred -----------CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh----CCCEEEEeeccccCcCCC
Confidence 01122233345567899999999999999999887 899999999999998643
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=9.1e-20 Score=168.85 Aligned_cols=178 Identities=17% Similarity=0.147 Sum_probs=132.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHc---C---CcEEEEEecChhH-HHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 88 SVIITGASSGLGLATAKALAET---G---KWHIIMACRDFLK-AERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~---G---a~~Vi~~~r~~~~-~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
++|||||+|+||+++++.|+++ | . +|++++|+... ..+..+.+. .+.++.++.+|++|.+++.+++
T Consensus 2 ~vlVTGatG~iG~~l~~~L~~~~~~g~~~~-~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~----- 74 (337)
T 1r6d_A 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPAD-EVIVLDSLTYAGNRANLAPVD-ADPRLRFVHGDIRDAGLLAREL----- 74 (337)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTSCTTSCCS-EEEEEECCCTTCCGGGGGGGT-TCTTEEEEECCTTCHHHHHHHT-----
T ss_pred eEEEECCccHHHHHHHHHHHhhhcCCCCce-EEEEEECCCccCchhhhhhcc-cCCCeEEEEcCCCCHHHHHHHh-----
Confidence 6999999999999999999996 6 4 88888885311 001111121 1346889999999999888776
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
.++|+||||||.... +.+.++++..+++|+.++.++++++.+.. .++||++||.+.+... .
T Consensus 75 --~~~d~Vih~A~~~~~-----~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~------~~~~v~~SS~~vyg~~-~----- 135 (337)
T 1r6d_A 75 --RGVDAIVHFAAESHV-----DRSIAGASVFTETNVQGTQTLLQCAVDAG------VGRVVHVSTNQVYGSI-D----- 135 (337)
T ss_dssp --TTCCEEEECCSCCCH-----HHHHHCCHHHHHHHTHHHHHHHHHHHHTT------CCEEEEEEEGGGGCCC-S-----
T ss_pred --cCCCEEEECCCccCc-----hhhhhCHHHHHHHHHHHHHHHHHHHHHcC------CCEEEEecchHHhCCC-C-----
Confidence 379999999997431 12345678899999999999999987652 2499999998654211 0
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
..++.+..+..+...|+.||++.+.+++.++.++ |+++++++||.+.+|+.
T Consensus 136 ------------------~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----g~~~~ilrp~~v~G~~~ 186 (337)
T 1r6d_A 136 ------------------SGSWTESSPLEPNSPYAASKAGSDLVARAYHRTY----GLDVRITRCCNNYGPYQ 186 (337)
T ss_dssp ------------------SSCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECEEECTTC
T ss_pred ------------------CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHH----CCCEEEEEeeeeECCCC
Confidence 0112222334556789999999999999998876 89999999999999864
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-19 Score=168.60 Aligned_cols=182 Identities=12% Similarity=0.083 Sum_probs=131.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhH------HHHHHHHhcc-CCCceEEEEccCCCHHHHHHHHHHH
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK------AERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTF 158 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~------~~~~~~~l~~-~~~~v~~~~~Dvs~~~~v~~~~~~~ 158 (350)
++++|||||+|+||.+++++|+++| ++|++++|+... ..+..+.+.. .+.++.++.+|++|.+++.++++..
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEAG-YLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKY 80 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTT-CCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHhc
Confidence 4689999999999999999999999 588888874321 1111122211 2346889999999999998887752
Q ss_pred HHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCC
Q 018819 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (350)
Q Consensus 159 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (350)
++|+||||||.... ..+.++++..+++|+.++.++++++.. .+ .++||++||...+... .
T Consensus 81 -----~~d~vih~A~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~iv~~SS~~~~g~~-~--- 140 (348)
T 1ek6_A 81 -----SFMAVIHFAGLKAV-----GESVQKPLDYYRVNLTGTIQLLEIMKA----HG--VKNLVFSSSATVYGNP-Q--- 140 (348)
T ss_dssp -----CEEEEEECCSCCCH-----HHHHHCHHHHHHHHHHHHHHHHHHHHH----TT--CCEEEEEEEGGGGCSC-S---
T ss_pred -----CCCEEEECCCCcCc-----cchhhchHHHHHHHHHHHHHHHHHHHH----hC--CCEEEEECcHHHhCCC-C---
Confidence 69999999997432 113567788999999999999987643 22 3599999997654210 0
Q ss_pred CCCCCccccccccccCCCCCCCcccCCCCC-CchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCC
Q 018819 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDF-DGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (350)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~ 311 (350)
..+..+..+. +....|+.||++.+.+++.++.+ ..+++++.++|+.+.++
T Consensus 141 --------------------~~~~~E~~~~~p~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~lR~~~v~G~ 191 (348)
T 1ek6_A 141 --------------------YLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQA---DKTWNAVLLRYFNPTGA 191 (348)
T ss_dssp --------------------SSSBCTTSCCCCCSSHHHHHHHHHHHHHHHHHHH---CTTCEEEEEEECEEECC
T ss_pred --------------------CCCcCCCCCCCCCCCchHHHHHHHHHHHHHHHhc---CCCcceEEEeeccccCC
Confidence 0111222222 23678999999999999998876 13699999999999876
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-19 Score=169.31 Aligned_cols=185 Identities=15% Similarity=0.090 Sum_probs=133.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhH-----HHHHHHHhccCCC-ceEEEEccCCCHHHHHHHHHHHHH
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK-----AERAAKSAGMAKE-NYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~-----~~~~~~~l~~~~~-~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
+++|||||+|+||.++++.|+++| +.|++++|+... ++.....+...+. ++.++.+|++|.+++.++++.+
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 105 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKG-YEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVI-- 105 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHH--
T ss_pred CeEEEEcCCchHHHHHHHHHHHCC-CEEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhc--
Confidence 689999999999999999999999 599999987533 2111111111122 6888999999999999998876
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
++|+||||||.... ..+.++++..+++|+.++.++++++.+...+++. .++||++||...+... .
T Consensus 106 ---~~d~Vih~A~~~~~-----~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~-~~~~v~~SS~~vyg~~-~----- 170 (381)
T 1n7h_A 106 ---KPDEVYNLAAQSHV-----AVSFEIPDYTADVVATGALRLLEAVRSHTIDSGR-TVKYYQAGSSEMFGST-P----- 170 (381)
T ss_dssp ---CCSEEEECCSCCCH-----HHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCC-CCEEEEEEEGGGGTTS-C-----
T ss_pred ---CCCEEEECCcccCc-----cccccCHHHHHHHHHHHHHHHHHHHHHhCCccCC-ccEEEEeCcHHHhCCC-C-----
Confidence 69999999997432 1345678899999999999999999987654211 3599999998654211 0
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
. +..+..+..+...|+.+|++.+.+++.++.++ |+.+..+.|..+..|.
T Consensus 171 ------------------~-~~~E~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----~~~~~~~r~~~~~gp~ 219 (381)
T 1n7h_A 171 ------------------P-PQSETTPFHPRSPYAASKCAAHWYTVNYREAY----GLFACNGILFNHESPR 219 (381)
T ss_dssp ------------------S-SBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECCEECTT
T ss_pred ------------------C-CCCCCCCCCCCCchHHHHHHHHHHHHHHHHHh----CCcEEEEEeCceeCCC
Confidence 0 12222334456789999999999999998876 6666666555554443
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.82 E-value=8.6e-20 Score=167.78 Aligned_cols=181 Identities=20% Similarity=0.160 Sum_probs=122.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEec-ChhH---HHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLK---AERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r-~~~~---~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
||++|||||+|+||+++++.|+++| +.|+++.| +.+. .... ..+...+.++.++.+|++|.++++++++
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----- 73 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLENG-YSVNTTIRADPERKRDVSFL-TNLPGASEKLHFFNADLSNPDSFAAAIE----- 73 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEECCCC----CCCHHH-HTSTTHHHHEEECCCCTTCGGGGHHHHT-----
T ss_pred CCEEEEECChhHHHHHHHHHHHHCC-CEEEEEEeCCccchhHHHHH-HhhhccCCceEEEecCCCCHHHHHHHHc-----
Confidence 5789999999999999999999999 58888888 5422 1111 1121111257888999999998888765
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHH-HHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEG-FELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~-~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
.+|+|||||+.. . .+.++ ++..+++|+.|++++++++.+.. + .++||++||.++..+.....
T Consensus 74 --~~d~vih~A~~~-~------~~~~~~~~~~~~~nv~gt~~l~~aa~~~~---~--~~~iV~~SS~~~~~~~~~~~--- 136 (322)
T 2p4h_X 74 --GCVGIFHTASPI-D------FAVSEPEEIVTKRTVDGALGILKACVNSK---T--VKRFIYTSSGSAVSFNGKDK--- 136 (322)
T ss_dssp --TCSEEEECCCCC---------------CHHHHHHHHHHHHHHHHHTTCS---S--CCEEEEEEEGGGTSCSSSCC---
T ss_pred --CCCEEEEcCCcc-c------CCCCChHHHHHHHHHHHHHHHHHHHHhcC---C--ccEEEEeccHHHcccCCCCC---
Confidence 589999999642 1 12222 45689999999999999986531 1 25999999987654320000
Q ss_pred CCCccccccccccCCCCCCCcccCCCC---------CCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCC
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGD---------FDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~ 311 (350)
.+..+... .+....|+.||.+.+.+++.++.+ .|+++++++||.|.+|
T Consensus 137 -------------------~~~~e~~~~~~~~~~~~~p~~~~Y~~sK~~~e~~~~~~~~~----~gi~~~~lrp~~v~g~ 193 (322)
T 2p4h_X 137 -------------------DVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQ----NGIDVVTLILPFIVGR 193 (322)
T ss_dssp -------------------SEECTTCCCCHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHH----TTCCEEEEEECEEESC
T ss_pred -------------------eecCCccccchhhhcccCcccccHHHHHHHHHHHHHHHHHh----cCCcEEEEcCCceECC
Confidence 00000000 011126999999887777666544 3899999999999998
Q ss_pred cc
Q 018819 312 GL 313 (350)
Q Consensus 312 ~~ 313 (350)
+.
T Consensus 194 ~~ 195 (322)
T 2p4h_X 194 FV 195 (322)
T ss_dssp CC
T ss_pred CC
Confidence 64
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.82 E-value=8.4e-20 Score=167.42 Aligned_cols=172 Identities=14% Similarity=0.124 Sum_probs=130.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
+++|||||+|+||+++++.|+++| ..|++..|+....+. ....+.++.+|++| +++.++++ ++|
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g-~~v~~~~~~~~~~~~-------~~~~~~~~~~Dl~~-~~~~~~~~-------~~d 65 (313)
T 3ehe_A 2 SLIVVTGGAGFIGSHVVDKLSESN-EIVVIDNLSSGNEEF-------VNEAARLVKADLAA-DDIKDYLK-------GAE 65 (313)
T ss_dssp -CEEEETTTSHHHHHHHHHHTTTS-CEEEECCCSSCCGGG-------SCTTEEEECCCTTT-SCCHHHHT-------TCS
T ss_pred CEEEEECCCchHHHHHHHHHHhCC-CEEEEEcCCCCChhh-------cCCCcEEEECcCCh-HHHHHHhc-------CCC
Confidence 379999999999999999999999 577766665432211 13468899999999 88777765 699
Q ss_pred EEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccc
Q 018819 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (350)
Q Consensus 167 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (350)
+|||+|+.... +.+.++++..+++|+.++.++++++... + .++||++||...+...
T Consensus 66 ~vih~a~~~~~-----~~~~~~~~~~~~~nv~~~~~l~~~~~~~----~--~~~iv~~SS~~vyg~~------------- 121 (313)
T 3ehe_A 66 EVWHIAANPDV-----RIGAENPDEIYRNNVLATYRLLEAMRKA----G--VSRIVFTSTSTVYGEA------------- 121 (313)
T ss_dssp EEEECCCCCCC-----C-CCCCHHHHHHHHHHHHHHHHHHHHHH----T--CCEEEEECCGGGGCSC-------------
T ss_pred EEEECCCCCCh-----hhhhhCHHHHHHHHHHHHHHHHHHHHHc----C--CCeEEEeCchHHhCcC-------------
Confidence 99999996422 3455678899999999999999986543 1 2599999997654211
Q ss_pred cccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
...+..+..+..+...|+.+|.+.+.+++.++.++ |+++++++|+.|.+|..
T Consensus 122 -----------~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----g~~~~ilRp~~v~G~~~ 173 (313)
T 3ehe_A 122 -----------KVIPTPEDYPTHPISLYGASKLACEALIESYCHTF----DMQAWIYRFANVIGRRS 173 (313)
T ss_dssp -----------SSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHT----TCEEEEEECSCEESTTC
T ss_pred -----------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc----CCCEEEEeeccccCcCC
Confidence 01122233344567789999999999999999886 89999999999998854
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.81 E-value=3e-19 Score=165.73 Aligned_cols=185 Identities=17% Similarity=0.138 Sum_probs=133.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCC------cEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGK------WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVD 156 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga------~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~ 156 (350)
.++++++|||||+|+||.++++.|+++|. ++|++++|+...... ..+.++.++.+|++|.++++++++
T Consensus 11 ~~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~------~~~~~~~~~~~Dl~d~~~~~~~~~ 84 (342)
T 2hrz_A 11 YFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA------GFSGAVDARAADLSAPGEAEKLVE 84 (342)
T ss_dssp CCSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT------TCCSEEEEEECCTTSTTHHHHHHH
T ss_pred CccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc------ccCCceeEEEcCCCCHHHHHHHHh
Confidence 46788999999999999999999999993 389999887532211 124568899999999999888775
Q ss_pred HHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCC
Q 018819 157 TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236 (350)
Q Consensus 157 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~ 236 (350)
+++|+||||||... ..+.++++..+++|+.|+.++++++.+...+.+ +.++||++||.+.+....
T Consensus 85 ------~~~d~vih~A~~~~------~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~-~~~~iv~~SS~~~~~~~~-- 149 (342)
T 2hrz_A 85 ------ARPDVIFHLAAIVS------GEAELDFDKGYRINLDGTRYLFDAIRIANGKDG-YKPRVVFTSSIAVFGAPL-- 149 (342)
T ss_dssp ------TCCSEEEECCCCCH------HHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHC-CCCEEEEEEEGGGCCSSC--
T ss_pred ------cCCCEEEECCccCc------ccccccHHHHHHHHHHHHHHHHHHHHhcccccC-CCcEEEEeCchHhhCCCC--
Confidence 37999999999742 124567899999999999999999887542210 024999999986542110
Q ss_pred CCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhc-CCCCcEEEEee--CCcccC
Q 018819 237 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFH-EETGIAFASLY--PGCIAT 310 (350)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~-~~~gi~v~~v~--PG~v~t 310 (350)
..+..+..+..+...|+.||++.+.+++.++.+.. ....+|++.|+ ||.+.+
T Consensus 150 ----------------------~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~~~ 204 (342)
T 2hrz_A 150 ----------------------PYPIPDEFHTTPLTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPNA 204 (342)
T ss_dssp ----------------------CSSBCTTCCCCCSSHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSCCC
T ss_pred ----------------------CCCcCCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCCcc
Confidence 01122223344567899999999999998887641 11235566665 776554
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.9e-19 Score=164.03 Aligned_cols=175 Identities=13% Similarity=0.143 Sum_probs=132.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
+++|||||+|+||.++++.|+++| +.|++++|+..... +.+. .++.++.+|++|.+++.+++++ .++|
T Consensus 2 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~---~~~~---~~~~~~~~D~~~~~~~~~~~~~-----~~~d 69 (330)
T 2c20_A 2 NSILICGGAGYIGSHAVKKLVDEG-LSVVVVDNLQTGHE---DAIT---EGAKFYNGDLRDKAFLRDVFTQ-----ENIE 69 (330)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCG---GGSC---TTSEEEECCTTCHHHHHHHHHH-----SCEE
T ss_pred CEEEEECCCcHHHHHHHHHHHhCC-CEEEEEeCCCcCch---hhcC---CCcEEEECCCCCHHHHHHHHhh-----cCCC
Confidence 479999999999999999999999 58999888643211 1121 2678899999999999888775 3799
Q ss_pred EEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccc
Q 018819 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (350)
Q Consensus 167 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (350)
+|||+||.... ..+.++++..+++|+.++.++++++... + .++||++||...+...
T Consensus 70 ~vih~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~a~~~~----~--~~~~v~~Ss~~~~~~~------------- 125 (330)
T 2c20_A 70 AVMHFAADSLV-----GVSMEKPLQYYNNNVYGALCLLEVMDEF----K--VDKFIFSSTAATYGEV------------- 125 (330)
T ss_dssp EEEECCCCCCH-----HHHHHSHHHHHHHHHHHHHHHHHHHHHT----T--CCEEEEECCGGGGCSC-------------
T ss_pred EEEECCcccCc-----cccccCHHHHHHHHhHHHHHHHHHHHHc----C--CCEEEEeCCceeeCCC-------------
Confidence 99999997532 1145678889999999999999987532 2 2599999997654210
Q ss_pred cccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
...+..+..+..+...|+.+|.+.+.+++.++.++ |+++++++||.|.++.
T Consensus 126 -----------~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~ilrp~~v~G~~ 176 (330)
T 2c20_A 126 -----------DVDLITEETMTNPTNTYGETKLAIEKMLHWYSQAS----NLRYKIFRYFNVAGAT 176 (330)
T ss_dssp -----------SSSSBCTTSCCCCSSHHHHHHHHHHHHHHHHHHTS----SCEEEEEECSEEECCC
T ss_pred -----------CCCCCCcCCCCCCCChHHHHHHHHHHHHHHHHHHh----CCcEEEEecCcccCCC
Confidence 01122233334456789999999999999888765 8999999999998874
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.7e-20 Score=168.82 Aligned_cols=172 Identities=17% Similarity=0.154 Sum_probs=123.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
+++|||||+|+||+++++.|+++| ++|++++|+....+. +.. .++.++.+|++|.+++.++++ ++|
T Consensus 14 M~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~----l~~--~~~~~~~~Dl~d~~~~~~~~~-------~~d 79 (342)
T 2x4g_A 14 VKYAVLGATGLLGHHAARAIRAAG-HDLVLIHRPSSQIQR----LAY--LEPECRVAEMLDHAGLERALR-------GLD 79 (342)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECTTSCGGG----GGG--GCCEEEECCTTCHHHHHHHTT-------TCS
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEecChHhhhh----hcc--CCeEEEEecCCCHHHHHHHHc-------CCC
Confidence 379999999999999999999999 599999997654322 211 257889999999998887765 599
Q ss_pred EEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccc
Q 018819 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (350)
Q Consensus 167 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (350)
+|||+||... .+.++++..+++|+.++.++++++.+.- .++||++||...+.....+.
T Consensus 80 ~vih~a~~~~-------~~~~~~~~~~~~n~~~~~~l~~a~~~~~------~~~~v~~SS~~~~~~~~~~~--------- 137 (342)
T 2x4g_A 80 GVIFSAGYYP-------SRPRRWQEEVASALGQTNPFYAACLQAR------VPRILYVGSAYAMPRHPQGL--------- 137 (342)
T ss_dssp EEEEC-------------------CHHHHHHHHHHHHHHHHHHHT------CSCEEEECCGGGSCCCTTSS---------
T ss_pred EEEECCccCc-------CCCCCHHHHHHHHHHHHHHHHHHHHHcC------CCeEEEECCHHhhCcCCCCC---------
Confidence 9999999742 1345678899999999999999987741 25999999987653210000
Q ss_pred cccccccCCCCCCCcccCCCCCCc----hhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 247 LRGFAGGLNGLNSSSMIDGGDFDG----AKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.+ .+..+..+ ...|+.+|.+.+.+++.++. . |+++++|+||.+.+++.
T Consensus 138 -------------~~-~E~~~~~p~~~~~~~Y~~sK~~~e~~~~~~~~----~-g~~~~ilrp~~v~g~~~ 189 (342)
T 2x4g_A 138 -------------PG-HEGLFYDSLPSGKSSYVLCKWALDEQAREQAR----N-GLPVVIGIPGMVLGELD 189 (342)
T ss_dssp -------------CB-CTTCCCSSCCTTSCHHHHHHHHHHHHHHHHHH----T-TCCEEEEEECEEECSCC
T ss_pred -------------CC-CCCCCCCccccccChHHHHHHHHHHHHHHHhh----c-CCcEEEEeCCceECCCC
Confidence 00 11122223 67899999999999988764 3 89999999999999865
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-19 Score=172.62 Aligned_cols=181 Identities=18% Similarity=0.100 Sum_probs=127.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChh---HHHHHHHHhcc---------CCCceEEEEccCCCHHHH
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL---KAERAAKSAGM---------AKENYTIMHLDLASLDSV 151 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~---~~~~~~~~l~~---------~~~~v~~~~~Dvs~~~~v 151 (350)
..++++|||||+|+||+++++.|++.| .+|+++.|+.. ..+.+.+.+.. .+.++.++.+|++|++++
T Consensus 67 ~~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l 145 (427)
T 4f6c_A 67 RPLGNTLLTGATGFLGAYLIEALQGYS-HRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDV 145 (427)
T ss_dssp CCCEEEEEECTTSHHHHHHHHHHTTTE-EEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CCC
T ss_pred CCCCEEEEecCCcHHHHHHHHHHHcCC-CEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcccC
Confidence 456799999999999999999999999 59999999865 23333332211 135789999999998877
Q ss_pred HHHHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCC
Q 018819 152 RQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNT 231 (350)
Q Consensus 152 ~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~ 231 (350)
. ..+++|+||||||... ..++++..+++|+.++.++++++.+ . .++||++||...
T Consensus 146 ~--------~~~~~d~Vih~A~~~~--------~~~~~~~~~~~Nv~g~~~l~~aa~~---~----~~~~v~~SS~~~-- 200 (427)
T 4f6c_A 146 V--------LPENMDTIIHAGARTD--------HFGDDDEFEKVNVQGTVDVIRLAQQ---H----HARLIYVSTISV-- 200 (427)
T ss_dssp C--------CSSCCSEEEECCCCC---------------CHHHHHHHHHHHHHHHHHH---T----TCEEEEEEEGGG--
T ss_pred C--------CcCCCCEEEECCcccC--------CCCCHHHHHHHHHHHHHHHHHHHHh---c----CCcEEEECchHh--
Confidence 7 4568999999999753 2346788999999999999999876 2 259999999876
Q ss_pred CCCCCCCCCCCCccccccccccCCCCCCCcccCCCC---CCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcc
Q 018819 232 NTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGD---FDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI 308 (350)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v 308 (350)
|......+ ...++.+..+ ......|+.||.+.+.+++.++. .|+++++|+||.|
T Consensus 201 G~~~~~~~------------------~~~~~~E~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-----~g~~~~ivRpg~v 257 (427)
T 4f6c_A 201 GTYFDIDT------------------EDVTFSEADVYKGQLLTSPYTRSKFYSELKVLEAVN-----NGLDGRIVRVGNL 257 (427)
T ss_dssp GSEECSSC------------------SCCEECTTCSCSSCCCCSHHHHHHHHHHHHHHHHHH-----TTCCEEEEEECCE
T ss_pred CCCccCCC------------------CCccccccccccCCCCCCchHHHHHHHHHHHHHHHH-----cCCCEEEEeCCee
Confidence 32111000 0111111111 23567999999999999987653 3899999999999
Q ss_pred cCCcc
Q 018819 309 ATTGL 313 (350)
Q Consensus 309 ~t~~~ 313 (350)
.++..
T Consensus 258 ~G~~~ 262 (427)
T 4f6c_A 258 TSPYN 262 (427)
T ss_dssp ESCSS
T ss_pred ecCCC
Confidence 98754
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=8e-19 Score=162.53 Aligned_cols=177 Identities=14% Similarity=0.094 Sum_probs=126.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh----hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDF----LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~----~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
++|||||+|+||++++++|+++|+ .|++++|.. +..+.+. .+ .+.++.++.+|++|++++.++++..
T Consensus 2 ~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~Dl~~~~~~~~~~~~~----- 72 (338)
T 1udb_A 2 RVLVTGGSGYIGSHTCVQLLQNGH-DVIILDNLCNSKRSVLPVIE-RL--GGKHPTFVEGDIRNEALMTEILHDH----- 72 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCTTHHHHHH-HH--HTSCCEEEECCTTCHHHHHHHHHHT-----
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC-EEEEEecCCCcchhHHHHHH-hh--cCCcceEEEccCCCHHHHHHHhhcc-----
Confidence 689999999999999999999994 888887632 1222221 11 1346788999999999998887752
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCC
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (350)
++|+||||||.... ....++++..+++|+.++.++++++... + .++||++||.+.+... .
T Consensus 73 ~~D~vih~A~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~--~~~iv~~SS~~~~g~~-~-------- 132 (338)
T 1udb_A 73 AIDTVIHFAGLKAV-----GESVQKPLEYYDNNVNGTLRLISAMRAA----N--VKNFIFSSSATVYGDN-P-------- 132 (338)
T ss_dssp TCSEEEECCSCCCH-----HHHHHCHHHHHHHHHHHHHHHHHHHHHH----T--CCEEEEEEEGGGGCSC-C--------
T ss_pred CCCEEEECCccCcc-----ccchhcHHHHHHHHHHHHHHHHHHHHhc----C--CCeEEEEccHHHhCCC-C--------
Confidence 69999999997422 1134556788999999999999876432 2 2599999997654210 0
Q ss_pred ccccccccccCCCCCCCcccCCCCC-CchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCC
Q 018819 244 LGDLRGFAGGLNGLNSSSMIDGGDF-DGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (350)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~ 311 (350)
..+..+..+. ++...|+.||++.+.+++.++.++ .|+++..+.|+.+..+
T Consensus 133 ---------------~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~ilR~~~v~G~ 183 (338)
T 1udb_A 133 ---------------KIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQ---PDWSIALLRYFNPVGA 183 (338)
T ss_dssp ---------------SSSBCTTSCCCCCSSHHHHHHHHHHHHHHHHHHHS---TTCEEEEEEECEEECC
T ss_pred ---------------CCCcCcccCCCCCCChHHHHHHHHHHHHHHHHHhc---CCCceEEEeeceecCC
Confidence 0011111122 236789999999999999998774 3799999998777654
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-20 Score=162.97 Aligned_cols=185 Identities=12% Similarity=0.067 Sum_probs=131.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC-cEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga-~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
.+++++||||+|+||++++++|+++|. .+|++++|+... ...++.++.+|++|.+++.+++
T Consensus 4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~----------~~~~~~~~~~D~~~~~~~~~~~-------- 65 (215)
T 2a35_A 4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA----------EHPRLDNPVGPLAELLPQLDGS-------- 65 (215)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC----------CCTTEECCBSCHHHHGGGCCSC--------
T ss_pred CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc----------cCCCceEEeccccCHHHHHHhh--------
Confidence 457899999999999999999999994 289999998644 1236788899999887665543
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCC
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (350)
+|+||||||.... +.++++..+++|+.++.++++++.+. + .++||++||.....
T Consensus 66 -~d~vi~~a~~~~~-------~~~~~~~~~~~n~~~~~~l~~~~~~~----~--~~~~v~~Ss~~~~~------------ 119 (215)
T 2a35_A 66 -IDTAFCCLGTTIK-------EAGSEEAFRAVDFDLPLAVGKRALEM----G--ARHYLVVSALGADA------------ 119 (215)
T ss_dssp -CSEEEECCCCCHH-------HHSSHHHHHHHHTHHHHHHHHHHHHT----T--CCEEEEECCTTCCT------------
T ss_pred -hcEEEECeeeccc-------cCCCHHHHHHhhHHHHHHHHHHHHHc----C--CCEEEEECCcccCC------------
Confidence 8999999997421 24567889999999999999987543 2 24899999987652
Q ss_pred ccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcE-EEEeeCCcccCCcccccchhhHH
Q 018819 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIA-FASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~-v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
++...|+.+|.+.+.+++. .|++ ++.|+||++.++.......+...
T Consensus 120 -------------------------~~~~~y~~sK~~~e~~~~~--------~~~~~~~~vrp~~v~g~~~~~~~~~~~~ 166 (215)
T 2a35_A 120 -------------------------KSSIFYNRVKGELEQALQE--------QGWPQLTIARPSLLFGPREEFRLAEILA 166 (215)
T ss_dssp -------------------------TCSSHHHHHHHHHHHHHTT--------SCCSEEEEEECCSEESTTSCEEGGGGTT
T ss_pred -------------------------CCccHHHHHHHHHHHHHHH--------cCCCeEEEEeCceeeCCCCcchHHHHHH
Confidence 2345899999998877642 2898 99999999998753211111100
Q ss_pred -hhhhhhHHhhhcCccchhhhhhhccc
Q 018819 323 -LLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 323 -~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
...+ +... ...++.++++|+.++.
T Consensus 167 ~~~~~-~~~~-~~~~i~~~Dva~~~~~ 191 (215)
T 2a35_A 167 APIAR-ILPG-KYHGIEACDLARALWR 191 (215)
T ss_dssp CCCC-----C-HHHHHHHHHHHHHHHH
T ss_pred Hhhhh-ccCC-CcCcEeHHHHHHHHHH
Confidence 0001 0000 1235678888887754
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=99.79 E-value=6.6e-20 Score=169.87 Aligned_cols=189 Identities=15% Similarity=0.095 Sum_probs=123.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHH--HHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAER--AAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~--~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
++++|||||+|+||+++++.|+++| +.|+++.|+.+.... ....+. ...++.++.+|++|.+++.++++
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G-~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~------- 79 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKG-YAVNTTVRDPDNQKKVSHLLELQ-ELGDLKIFRADLTDELSFEAPIA------- 79 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTT-CEEEEEESCTTCTTTTHHHHHHG-GGSCEEEEECCTTTSSSSHHHHT-------
T ss_pred CCEEEEECCchHHHHHHHHHHHHCC-CEEEEEEcCcchhhhHHHHHhcC-CCCcEEEEecCCCChHHHHHHHc-------
Confidence 5789999999999999999999999 588888887542211 111222 12367889999999988877765
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCC
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (350)
.+|+|||+|+.... . ..+..+..+++|+.|+.++++++.+.. + .++||++||.++..+..... ..
T Consensus 80 ~~D~Vih~A~~~~~----~--~~~~~~~~~~~nv~gt~~ll~aa~~~~---~--v~r~V~~SS~~~~~~~~~~~-~~--- 144 (338)
T 2rh8_A 80 GCDFVFHVATPVHF----A--SEDPENDMIKPAIQGVVNVMKACTRAK---S--VKRVILTSSAAAVTINQLDG-TG--- 144 (338)
T ss_dssp TCSEEEEESSCCCC---------------CHHHHHHHHHHHHHHHHCT---T--CCEEEEECCHHHHHHHHHTC-SC---
T ss_pred CCCEEEEeCCccCC----C--CCCcHHHHHHHHHHHHHHHHHHHHHcC---C--cCEEEEEecHHHeecCCcCC-CC---
Confidence 58999999986411 1 112224589999999999999987542 1 24999999987543210000 00
Q ss_pred ccccccccccCCCCCCCcccCC---CCC-CchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 244 LGDLRGFAGGLNGLNSSSMIDG---GDF-DGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
...+...+... .+. +....|+.||.+.+.+++.++.++ |+++++|+||.|.+|+.
T Consensus 145 -----------~~~~E~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----gi~~~~lrp~~v~Gp~~ 203 (338)
T 2rh8_A 145 -----------LVVDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAAWKFAEEN----NIDLITVIPTLMAGSSL 203 (338)
T ss_dssp -----------CCCCTTTTTCC-------CCCCCCTTSCCHHHHHHHHHHHHH----TCCEEEEEECEEESCCS
T ss_pred -----------cccChhhccchhhccccCCccchHHHHHHHHHHHHHHHHHHc----CCcEEEEeCCceECCCC
Confidence 00000000000 000 112269999999888888777654 89999999999999865
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=7.8e-19 Score=165.47 Aligned_cols=182 Identities=14% Similarity=0.052 Sum_probs=132.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.++++|||||+|+||+++++.|+++| ++|++++|+...... . ...++.++.+|++|.+++.++++ +
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~----~--~~~~v~~~~~Dl~d~~~~~~~~~-------~ 93 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKHEG-HYVIASDWKKNEHMT----E--DMFCDEFHLVDLRVMENCLKVTE-------G 93 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCSSSC----G--GGTCSEEEECCTTSHHHHHHHHT-------T
T ss_pred cCCeEEEECCccHHHHHHHHHHHHCC-CeEEEEECCCccchh----h--ccCCceEEECCCCCHHHHHHHhC-------C
Confidence 56799999999999999999999999 599999997543211 0 12357889999999999888764 6
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
+|+|||+||.... . ..+.++++..+++|+.++.++++++... + .++||++||...+... ....+
T Consensus 94 ~d~Vih~A~~~~~-~---~~~~~~~~~~~~~Nv~g~~~ll~a~~~~----~--~~~~V~~SS~~v~~~~-~~~~~----- 157 (379)
T 2c5a_A 94 VDHVFNLAADMGG-M---GFIQSNHSVIMYNNTMISFNMIEAARIN----G--IKRFFYASSACIYPEF-KQLET----- 157 (379)
T ss_dssp CSEEEECCCCCCC-H---HHHTTCHHHHHHHHHHHHHHHHHHHHHT----T--CSEEEEEEEGGGSCGG-GSSSS-----
T ss_pred CCEEEECceecCc-c---cccccCHHHHHHHHHHHHHHHHHHHHHc----C--CCEEEEEeehheeCCC-CCCCc-----
Confidence 9999999997432 0 1113457889999999999999998642 1 2499999997654211 00000
Q ss_pred cccccccccCCCCCCCcccCCC--CCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 245 GDLRGFAGGLNGLNSSSMIDGG--DFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
...++.+.. +..+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..
T Consensus 158 -------------~~~~~~E~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilrp~~v~G~~~ 211 (379)
T 2c5a_A 158 -------------TNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDF----GIECRIGRFHNIYGPFG 211 (379)
T ss_dssp -------------SSCEECGGGGSSBCCSSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECCEECTTS
T ss_pred -------------cCCCcCcccCCCCCCCChhHHHHHHHHHHHHHHHHHH----CCCEEEEEeCceeCcCC
Confidence 000011111 22345689999999999999988776 89999999999999854
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.2e-19 Score=171.22 Aligned_cols=179 Identities=20% Similarity=0.197 Sum_probs=128.5
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHc---CCcEEEEEecChhHHHHH---HHHhcc------------CCCceEEEEcc
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAET---GKWHIIMACRDFLKAERA---AKSAGM------------AKENYTIMHLD 144 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~---Ga~~Vi~~~r~~~~~~~~---~~~l~~------------~~~~v~~~~~D 144 (350)
..+++++|||||+|+||.+++++|+++ | .+|++++|+....... .+.+.. ...++.++.+|
T Consensus 70 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g-~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~D 148 (478)
T 4dqv_A 70 SPELRTVLLTGATGFLGRYLVLELLRRLDVD-GRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGD 148 (478)
T ss_dssp CSCCCEEEEECTTSHHHHHHHHHHHHHSCTT-CEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECC
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHhcCCCC-CEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeE
Confidence 457889999999999999999999999 8 5999999976443222 112211 13579999999
Q ss_pred CC------CHHHHHHHHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCC
Q 018819 145 LA------SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPS 218 (350)
Q Consensus 145 vs------~~~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~ 218 (350)
++ |.+++.++++ ++|+||||||.... +.++..+++|+.|+.++++++.. .+ .
T Consensus 149 l~~~~~gld~~~~~~~~~-------~~D~Vih~Aa~~~~---------~~~~~~~~~Nv~gt~~ll~aa~~----~~--~ 206 (478)
T 4dqv_A 149 KSEPDLGLDQPMWRRLAE-------TVDLIVDSAAMVNA---------FPYHELFGPNVAGTAELIRIALT----TK--L 206 (478)
T ss_dssp TTSGGGGCCHHHHHHHHH-------HCCEEEECCSSCSB---------SSCCEEHHHHHHHHHHHHHHHTS----SS--C
T ss_pred CCCcccCCCHHHHHHHHc-------CCCEEEECccccCC---------cCHHHHHHHHHHHHHHHHHHHHh----CC--C
Confidence 98 6667776665 58999999998532 23456788999999999998753 22 2
Q ss_pred CeEEEEeccCCCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCC-----------CchhchhhhHHHHHHHHHH
Q 018819 219 KRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDF-----------DGAKAYKDSKVCNMLTMQE 287 (350)
Q Consensus 219 g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~Y~asKaa~~~~~~~ 287 (350)
++||++||.+..... .. ..+.+..+. .....|+.||.+.+.+++.
T Consensus 207 ~~~V~iSS~~v~~~~-~~-----------------------~~~~E~~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~ 262 (478)
T 4dqv_A 207 KPFTYVSTADVGAAI-EP-----------------------SAFTEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLRE 262 (478)
T ss_dssp CCEEEEEEGGGGTTS-CT-----------------------TTCCSSSCHHHHCCEEECCTTSEECHHHHHHHHHHHHHH
T ss_pred CeEEEEeehhhcCcc-CC-----------------------CCcCCcccccccCcccccccccccchHHHHHHHHHHHHH
Confidence 489999997543211 00 000111111 1224599999999999998
Q ss_pred HHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 288 FHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 288 la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
++.+. |+++++|+||.|.++.
T Consensus 263 ~~~~~----gi~~~ivRpg~v~G~~ 283 (478)
T 4dqv_A 263 ANDLC----ALPVAVFRCGMILADT 283 (478)
T ss_dssp HHHHH----CCCEEEEEECEEECCS
T ss_pred HHHHh----CCCeEEEECceeeCCC
Confidence 88765 8999999999998764
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-19 Score=163.77 Aligned_cols=147 Identities=18% Similarity=0.158 Sum_probs=88.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
++++|||||+|+||+++++.|+++| ++|++++|+... + + ++.+|++|.+++.++++.. ++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~-----------~-~--~~~~Dl~d~~~~~~~~~~~-----~~ 61 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNN-WHAVGCGFRRAR-----------P-K--FEQVNLLDSNAVHHIIHDF-----QP 61 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEC--------------------------------CHHHHHHH-----CC
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCC-CeEEEEccCCCC-----------C-C--eEEecCCCHHHHHHHHHhh-----CC
Confidence 4689999999999999999999999 599999986432 1 1 6789999999999888765 69
Q ss_pred cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcc
Q 018819 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (350)
|+||||||.... +.+.++++..+++|+.++.++++++.+. +++||++||...+.+.
T Consensus 62 d~vih~A~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~a~~~~-------~~~~v~~SS~~v~~~~------------ 117 (315)
T 2ydy_A 62 HVIVHCAAERRP-----DVVENQPDAASQLNVDASGNLAKEAAAV-------GAFLIYISSDYVFDGT------------ 117 (315)
T ss_dssp SEEEECC------------------------CHHHHHHHHHHHHH-------TCEEEEEEEGGGSCSS------------
T ss_pred CEEEECCcccCh-----hhhhcCHHHHHHHHHHHHHHHHHHHHHc-------CCeEEEEchHHHcCCC------------
Confidence 999999997532 2245678899999999999999998763 2499999998765320
Q ss_pred ccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHH
Q 018819 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFH 289 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la 289 (350)
..+..+..+..+...|+.+|++.+.+++.++
T Consensus 118 -------------~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~ 148 (315)
T 2ydy_A 118 -------------NPPYREEDIPAPLNLYGKTKLDGEKAVLENN 148 (315)
T ss_dssp -------------SCSBCTTSCCCCCSHHHHHHHHHHHHHHHHC
T ss_pred -------------CCCCCCCCCCCCcCHHHHHHHHHHHHHHHhC
Confidence 0112222233456789999999999888764
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-19 Score=168.88 Aligned_cols=181 Identities=12% Similarity=0.064 Sum_probs=131.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcC-CcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~G-a~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
.++++++|||||+|+||.++++.|+++| . .|++++|+..... +.+. ...++.++.+|++|++++.++++
T Consensus 29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~---~~l~-~~~~v~~~~~Dl~d~~~l~~~~~----- 98 (377)
T 2q1s_A 29 KLANTNVMVVGGAGFVGSNLVKRLLELGVN-QVHVVDNLLSAEK---INVP-DHPAVRFSETSITDDALLASLQD----- 98 (377)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTTCS-EEEEECCCTTCCG---GGSC-CCTTEEEECSCTTCHHHHHHCCS-----
T ss_pred HhCCCEEEEECCccHHHHHHHHHHHHcCCc-eEEEEECCCCCch---hhcc-CCCceEEEECCCCCHHHHHHHhh-----
Confidence 4678899999999999999999999999 6 8999988753321 1111 13468899999999988776654
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++|+|||+||.... ..+.++++..+++|+.++.++++++... .+ .++||++||...+ +...+
T Consensus 99 --~~d~Vih~A~~~~~-----~~~~~~~~~~~~~nv~~~~~ll~a~~~~---~~--~~~~V~~SS~~vy-g~~~~----- 160 (377)
T 2q1s_A 99 --EYDYVFHLATYHGN-----QSSIHDPLADHENNTLTTLKLYERLKHF---KR--LKKVVYSAAGCSI-AEKTF----- 160 (377)
T ss_dssp --CCSEEEECCCCSCH-----HHHHHCHHHHHHHHTHHHHHHHHHHTTC---SS--CCEEEEEEEC--------------
T ss_pred --CCCEEEECCCccCc-----hhhhhCHHHHHHHHHHHHHHHHHHHHHh---CC--CCeEEEeCCHHHc-CCCCC-----
Confidence 79999999997432 1234677889999999999999987431 02 2499999997643 21000
Q ss_pred CCccccccccccCCCCCCCccc--CCC---CC-CchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMI--DGG---DF-DGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~--~~~---~~-~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.+.. +.. +. .+...|+.+|.+.+.+++.++.++ |+++++++||.|.++..
T Consensus 161 ------------------~~~~~~E~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilRp~~v~G~~~ 216 (377)
T 2q1s_A 161 ------------------DDAKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQH----QLPTVRARFQNVYGPGE 216 (377)
T ss_dssp ------------------------CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECCEECTTC
T ss_pred ------------------CCcCcccccccccccCCCCchHHHHHHHHHHHHHHHHHh----CCCEEEEeeccEECCCC
Confidence 0011 111 22 345689999999999999988776 89999999999998864
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=99.78 E-value=8.1e-19 Score=162.41 Aligned_cols=175 Identities=16% Similarity=0.072 Sum_probs=121.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.++++++|||||+|+||+++++.|+++| ++|++++|+.....+ .+... .++.++.+|++|.+++.++++..
T Consensus 18 ~~~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~---~l~~~-~~~~~~~~Dl~d~~~~~~~~~~~---- 88 (333)
T 2q1w_A 18 GSHMKKVFITGICGQIGSHIAELLLERG-DKVVGIDNFATGRRE---HLKDH-PNLTFVEGSIADHALVNQLIGDL---- 88 (333)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCGG---GSCCC-TTEEEEECCTTCHHHHHHHHHHH----
T ss_pred cCCCCEEEEeCCccHHHHHHHHHHHHCC-CEEEEEECCCccchh---hHhhc-CCceEEEEeCCCHHHHHHHHhcc----
Confidence 4567899999999999999999999999 599999987432111 11111 36888999999999999888752
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
++|+||||||.... . +.++++ +++|+.++.++++++.+. + .++||++||.+.+ +..+...
T Consensus 89 -~~D~vih~A~~~~~-~-----~~~~~~--~~~N~~~~~~l~~a~~~~----~--~~~iV~~SS~~~~-g~~~~~~---- 148 (333)
T 2q1w_A 89 -QPDAVVHTAASYKD-P-----DDWYND--TLTNCVGGSNVVQAAKKN----N--VGRFVYFQTALCY-GVKPIQQ---- 148 (333)
T ss_dssp -CCSEEEECCCCCSC-T-----TCHHHH--HHHHTHHHHHHHHHHHHT----T--CSEEEEEEEGGGG-CSCCCSS----
T ss_pred -CCcEEEECceecCC-C-----ccCChH--HHHHHHHHHHHHHHHHHh----C--CCEEEEECcHHHh-CCCcccC----
Confidence 69999999997533 1 334555 999999999999998762 1 3599999997654 2000000
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHH-HHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQE-FHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~-la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
..+..+.. .+....|+.+|++.+.+++. ++ ++..+.|+.+.+|.
T Consensus 149 ----------------~~~~~E~~-~p~~~~Y~~sK~~~E~~~~~s~~---------~~~ilR~~~v~gp~ 193 (333)
T 2q1w_A 149 ----------------PVRLDHPR-NPANSSYAISKSANEDYLEYSGL---------DFVTFRLANVVGPR 193 (333)
T ss_dssp ----------------SBCTTSCC-CCTTCHHHHHHHHHHHHHHHHTC---------CEEEEEESEEESTT
T ss_pred ----------------CCCcCCCC-CCCCCchHHHHHHHHHHHHhhhC---------CeEEEeeceEECcC
Confidence 00111111 12226899999998888765 33 56778888887765
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-18 Score=147.55 Aligned_cols=185 Identities=12% Similarity=0.092 Sum_probs=128.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
+++++||||+|+||++++++|+++| ++|++++|+.+.... + ...++.++.+|++|++++.++++ .+
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g-~~V~~~~r~~~~~~~----~--~~~~~~~~~~D~~~~~~~~~~~~-------~~ 68 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAG-YEVTVLVRDSSRLPS----E--GPRPAHVVVGDVLQAADVDKTVA-------GQ 68 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCGGGSCS----S--SCCCSEEEESCTTSHHHHHHHHT-------TC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCC-CeEEEEEeChhhccc----c--cCCceEEEEecCCCHHHHHHHHc-------CC
Confidence 4689999999999999999999999 599999998654321 1 13468899999999999888765 58
Q ss_pred cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcc
Q 018819 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (350)
|++|||||.... .+ ..++|+.++.++++++... + .++||++||....... .
T Consensus 69 d~vi~~a~~~~~----~~--------~~~~n~~~~~~~~~~~~~~----~--~~~~v~~Ss~~~~~~~-~---------- 119 (206)
T 1hdo_A 69 DAVIVLLGTRND----LS--------PTTVMSEGARNIVAAMKAH----G--VDKVVACTSAFLLWDP-T---------- 119 (206)
T ss_dssp SEEEECCCCTTC----CS--------CCCHHHHHHHHHHHHHHHH----T--CCEEEEECCGGGTSCT-T----------
T ss_pred CEEEECccCCCC----CC--------ccchHHHHHHHHHHHHHHh----C--CCeEEEEeeeeeccCc-c----------
Confidence 999999997532 11 1247888998888887653 1 2499999998654211 0
Q ss_pred ccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcc-cCCcccccchhhHHhh
Q 018819 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI-ATTGLFREHIPLFRLL 324 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v-~t~~~~~~~~~~~~~~ 324 (350)
....+...|+.+|.+++.+.+ + .|+++++++||++ .++.. ....... ..
T Consensus 120 --------------------~~~~~~~~y~~~K~~~e~~~~----~----~~i~~~~lrp~~~~~~~~~-~~~~~~~-~~ 169 (206)
T 1hdo_A 120 --------------------KVPPRLQAVTDDHIRMHKVLR----E----SGLKYVAVMPPHIGDQPLT-GAYTVTL-DG 169 (206)
T ss_dssp --------------------CSCGGGHHHHHHHHHHHHHHH----H----TCSEEEEECCSEEECCCCC-SCCEEES-SS
T ss_pred --------------------cccccchhHHHHHHHHHHHHH----h----CCCCEEEEeCCcccCCCCC-cceEecc-cC
Confidence 000156789999999887763 2 3899999999998 33321 1100000 00
Q ss_pred hhhhHHhhhcCccchhhhhhhcccc
Q 018819 325 FPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 325 ~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.+ ...+++++|+|+.++++
T Consensus 170 ~~------~~~~i~~~Dva~~~~~~ 188 (206)
T 1hdo_A 170 RG------PSRVISKHDLGHFMLRC 188 (206)
T ss_dssp CS------SCSEEEHHHHHHHHHHT
T ss_pred CC------CCCccCHHHHHHHHHHH
Confidence 01 03567889988887653
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.1e-19 Score=160.88 Aligned_cols=174 Identities=13% Similarity=0.125 Sum_probs=130.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHc--CCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 86 KGSVIITGASSGLGLATAKALAET--GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~--Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
++++|||||+|+||.++++.|+++ | +.|++++|+....+ .. .++.++.+|++|.+++.+++++.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~~~~-~~-------~~~~~~~~D~~d~~~~~~~~~~~----- 67 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGT-ENVIASDIRKLNTD-VV-------NSGPFEVVNALDFNQIEHLVEVH----- 67 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCG-GGEEEEESCCCSCH-HH-------HSSCEEECCTTCHHHHHHHHHHT-----
T ss_pred CceEEEECCccHHHHHHHHHHHHhCCC-CEEEEEcCCCcccc-cc-------CCCceEEecCCCHHHHHHHHhhc-----
Confidence 357999999999999999999998 7 58888888754421 11 13568899999999999888754
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCC
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (350)
++|+|||+||.... ...++++..+++|+.++.++++++.+. + .++||++||...+... .+
T Consensus 68 ~~d~vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~----~--~~~~v~~SS~~~~~~~-~~------- 127 (312)
T 2yy7_A 68 KITDIYLMAALLSA------TAEKNPAFAWDLNMNSLFHVLNLAKAK----K--IKKIFWPSSIAVFGPT-TP------- 127 (312)
T ss_dssp TCCEEEECCCCCHH------HHHHCHHHHHHHHHHHHHHHHHHHHTT----S--CSEEECCEEGGGCCTT-SC-------
T ss_pred CCCEEEECCccCCC------chhhChHHHHHHHHHHHHHHHHHHHHc----C--CCEEEEeccHHHhCCC-CC-------
Confidence 69999999997421 123567889999999999999987542 2 2499999998765321 00
Q ss_pred ccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
..+..+..+..+...|+.+|.+.+.+++.++.++ |+++++++||.+.++.
T Consensus 128 ---------------~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~lrp~~v~g~~ 177 (312)
T 2yy7_A 128 ---------------KENTPQYTIMEPSTVYGISKQAGERWCEYYHNIY----GVDVRSIRYPGLISWS 177 (312)
T ss_dssp ---------------SSSBCSSCBCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEECEEECEEECSS
T ss_pred ---------------CCCccccCcCCCCchhHHHHHHHHHHHHHHHHhc----CCcEEEEeCCeEecCC
Confidence 0011122223446789999999999999888776 8999999999998864
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-18 Score=162.20 Aligned_cols=179 Identities=16% Similarity=0.125 Sum_probs=131.3
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHc-CCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCC-CHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA-SLDSVRQFVDTF 158 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~-Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs-~~~~v~~~~~~~ 158 (350)
+..+.++++|||||+|+||.++++.|+++ | ++|++++|+........ ...++.++.+|++ |.+++.++++
T Consensus 19 ~~~m~~~~vlVtGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~~~~~-----~~~~v~~~~~Dl~~d~~~~~~~~~-- 90 (372)
T 3slg_A 19 PGSMKAKKVLILGVNGFIGHHLSKRILETTD-WEVFGMDMQTDRLGDLV-----KHERMHFFEGDITINKEWVEYHVK-- 90 (372)
T ss_dssp ----CCCEEEEESCSSHHHHHHHHHHHHHSS-CEEEEEESCCTTTGGGG-----GSTTEEEEECCTTTCHHHHHHHHH--
T ss_pred CcccCCCEEEEECCCChHHHHHHHHHHhCCC-CEEEEEeCChhhhhhhc-----cCCCeEEEeCccCCCHHHHHHHhc--
Confidence 34567789999999999999999999998 8 59999999865433221 1246899999999 9999888876
Q ss_pred HHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCC
Q 018819 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (350)
Q Consensus 159 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (350)
++|+|||+|+.... ....++....+++|+.++.++++++...- .+||++||...+ +...+
T Consensus 91 -----~~d~Vih~A~~~~~-----~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-------~~~v~~SS~~vy-g~~~~-- 150 (372)
T 3slg_A 91 -----KCDVILPLVAIATP-----ATYVKQPLRVFELDFEANLPIVRSAVKYG-------KHLVFPSTSEVY-GMCAD-- 150 (372)
T ss_dssp -----HCSEEEECBCCCCH-----HHHHHCHHHHHHHHTTTTHHHHHHHHHHT-------CEEEEECCGGGG-BSCCC--
T ss_pred -----cCCEEEEcCccccH-----HHHhhCHHHHHHHHHHHHHHHHHHHHHhC-------CcEEEeCcHHHh-CCCCC--
Confidence 58999999997532 12345677889999999999999886542 399999996543 21100
Q ss_pred CCCCCccccccccccCCCCCCCcccCCC------C-CCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCC
Q 018819 239 PPKANLGDLRGFAGGLNGLNSSSMIDGG------D-FDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (350)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~ 311 (350)
.++.+.. + ..+...|+.+|.+.+.+++.++.+ |+++++++|+.|.+|
T Consensus 151 ---------------------~~~~e~~~~~~~~p~~~p~~~Y~~sK~~~E~~~~~~~~~-----g~~~~ilRp~~v~G~ 204 (372)
T 3slg_A 151 ---------------------EQFDPDASALTYGPINKPRWIYACSKQLMDRVIWGYGME-----GLNFTLFRPFNWIGP 204 (372)
T ss_dssp ---------------------SSBCTTTCCEEECCTTCTTHHHHHHHHHHHHHHHHHHTT-----TCEEEEEEECSEECS
T ss_pred ---------------------CCCCccccccccCCCCCCCCcHHHHHHHHHHHHHHHHHC-----CCCEEEEccccccCC
Confidence 0000110 0 134568999999998888877643 899999999999888
Q ss_pred cc
Q 018819 312 GL 313 (350)
Q Consensus 312 ~~ 313 (350)
..
T Consensus 205 ~~ 206 (372)
T 3slg_A 205 GL 206 (372)
T ss_dssp SC
T ss_pred Cc
Confidence 64
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=7.8e-19 Score=163.97 Aligned_cols=180 Identities=11% Similarity=-0.015 Sum_probs=128.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.++++++|||||+|+||.++++.|+++|.+.|++++|+..... ...+. .+. +.+|++|.+.++.+++. ..+
T Consensus 43 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~~----~~~-~~~d~~~~~~~~~~~~~--~~~ 113 (357)
T 2x6t_A 43 GIEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--FVNLV----DLN-IADYMDKEDFLIQIMAG--EEF 113 (357)
T ss_dssp -----CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGG--GGGTT----TSC-CSEEEEHHHHHHHHHTT--CCC
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcch--hhccc----Cce-EeeecCcHHHHHHHHhh--ccc
Confidence 4567899999999999999999999999348888888753311 11111 122 67899999888877653 235
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|+|||+||.... +.++++..+++|+.++.++++++.+. + . +||++||...+... .+
T Consensus 114 ~~~d~Vih~A~~~~~-------~~~~~~~~~~~n~~~~~~ll~a~~~~----~--~-r~V~~SS~~v~g~~-~~------ 172 (357)
T 2x6t_A 114 GDVEAIFHEGACSST-------TEWDGKYMMDNNYQYSKELLHYCLER----E--I-PFLYASSAATYGGR-TS------ 172 (357)
T ss_dssp SSCCEEEECCSCCCT-------TCCCHHHHHHHTHHHHHHHHHHHHHH----T--C-CEEEEEEGGGGCSC-SS------
T ss_pred CCCCEEEECCcccCC-------ccCCHHHHHHHHHHHHHHHHHHHHHc----C--C-eEEEEcchHHhCCC-CC------
Confidence 689999999997532 23456789999999999999998763 1 3 89999998654211 00
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.+..+..+..+...|+.+|.+.+.+++.++.++ |+++++|+||.|.+|..
T Consensus 173 -----------------~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----g~~~~ilRp~~v~Gp~~ 222 (357)
T 2x6t_A 173 -----------------DFIESREYEKPLNVFGYSKFLFDEYVRQILPEA----NSQIVGFRYFNVYGPRE 222 (357)
T ss_dssp -----------------CCCSSGGGCCCSSHHHHHHHHHHHHHHHHGGGC----SSCEEEEEECEEESSSC
T ss_pred -----------------CCcCCcCCCCCCChhHHHHHHHHHHHHHHHHHc----CCCEEEEecCeEECCCC
Confidence 011111122345689999999999998887664 89999999999998854
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.9e-18 Score=148.87 Aligned_cols=195 Identities=13% Similarity=0.146 Sum_probs=118.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
++|||||+|+||+++++.|+++| ++|++++|+.++.+... ..+.++.+|++|.++ +. +.++|+
T Consensus 2 kvlVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~~-------~~~~~~~~D~~d~~~--~~-------~~~~d~ 64 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAKNRG-HEVTAIVRNAGKITQTH-------KDINILQKDIFDLTL--SD-------LSDQNV 64 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCSHHHHHHC-------SSSEEEECCGGGCCH--HH-------HTTCSE
T ss_pred eEEEEcCCchhHHHHHHHHHhCC-CEEEEEEcCchhhhhcc-------CCCeEEeccccChhh--hh-------hcCCCE
Confidence 58999999999999999999999 59999999976654431 367899999999887 22 247999
Q ss_pred EEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcccc
Q 018819 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (350)
Q Consensus 168 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (350)
||||||.... ...+|+.++.+++++ +.+.+ .++||++||..+..+....
T Consensus 65 vi~~ag~~~~--------------~~~~~~~~~~~l~~a----~~~~~--~~~~v~~SS~~~~~~~~~~----------- 113 (221)
T 3ew7_A 65 VVDAYGISPD--------------EAEKHVTSLDHLISV----LNGTV--SPRLLVVGGAASLQIDEDG----------- 113 (221)
T ss_dssp EEECCCSSTT--------------TTTSHHHHHHHHHHH----HCSCC--SSEEEEECCCC-------------------
T ss_pred EEECCcCCcc--------------ccchHHHHHHHHHHH----HHhcC--CceEEEEecceEEEcCCCC-----------
Confidence 9999998421 134566666555554 45443 4699999998876532100
Q ss_pred ccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhhhhh
Q 018819 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPP 327 (350)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~ 327 (350)
....+..+..+...|+.+|.+.+.+ ..+.. ...|++++.|+||++.++........... ...
T Consensus 114 ------------~~~~~~~~~~~~~~y~~~k~~~e~~-~~~~~---~~~gi~~~ivrp~~v~g~~~~~~~~~~~~--~~~ 175 (221)
T 3ew7_A 114 ------------NTLLESKGLREAPYYPTARAQAKQL-EHLKS---HQAEFSWTYISPSAMFEPGERTGDYQIGK--DHL 175 (221)
T ss_dssp -----------------------CCCSCCHHHHHHHH-HHHHT---TTTTSCEEEEECSSCCCCC---------------
T ss_pred ------------ccccccCCCCCHHHHHHHHHHHHHH-HHHHh---hccCccEEEEeCcceecCCCccCceEecc--ccc
Confidence 0000111122345799999998776 22322 14599999999999998732111111000 000
Q ss_pred hHHhhhcCccchhhhhhhccc
Q 018819 328 FQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 328 ~~~~~~~~~~s~~~~a~~i~~ 348 (350)
........+++++++|+.++.
T Consensus 176 ~~~~~~~~~i~~~Dva~~~~~ 196 (221)
T 3ew7_A 176 LFGSDGNSFISMEDYAIAVLD 196 (221)
T ss_dssp --------CCCHHHHHHHHHH
T ss_pred eecCCCCceEeHHHHHHHHHH
Confidence 000111246889999988764
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-18 Score=151.90 Aligned_cols=197 Identities=12% Similarity=0.016 Sum_probs=126.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
++|||||+|+||+++++.|+++| +.|++++|+.+..... . ..++.++.+|++|.++ +. +.++|+
T Consensus 2 kilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~----~--~~~~~~~~~D~~d~~~--~~-------~~~~d~ 65 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRRG-HEVLAVVRDPQKAADR----L--GATVATLVKEPLVLTE--AD-------LDSVDA 65 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHH----T--CTTSEEEECCGGGCCH--HH-------HTTCSE
T ss_pred EEEEEcCCCHHHHHHHHHHHHCC-CEEEEEEecccccccc----c--CCCceEEecccccccH--hh-------cccCCE
Confidence 59999999999999999999999 5999999997665433 1 2468899999999887 21 247999
Q ss_pred EEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcccc
Q 018819 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (350)
Q Consensus 168 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (350)
||||||.... . . ...+|+.++.+++++ +.+.+ ++||++||.++..+..... +
T Consensus 66 vi~~ag~~~~-~---~--------~~~~n~~~~~~l~~a----~~~~~---~~~v~~SS~~~~~~~~~~~-~-------- 117 (224)
T 3h2s_A 66 VVDALSVPWG-S---G--------RGYLHLDFATHLVSL----LRNSD---TLAVFILGSASLAMPGADH-P-------- 117 (224)
T ss_dssp EEECCCCCTT-S---S--------CTHHHHHHHHHHHHT----CTTCC---CEEEEECCGGGSBCTTCSS-C--------
T ss_pred EEECCccCCC-c---c--------hhhHHHHHHHHHHHH----HHHcC---CcEEEEecceeeccCCCCc-c--------
Confidence 9999998521 1 0 134677777666555 44432 5999999987664321000 0
Q ss_pred ccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhhhhh
Q 018819 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPP 327 (350)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~ 327 (350)
....+.........|+.+|.+.+.+ + ++.+..|++++.|+||++.++..... ..... ...
T Consensus 118 ------------~~~~~~~~~~~~~~y~~sK~~~e~~-~----~~~~~~~i~~~ivrp~~v~g~~~~~~-~~~~~--~~~ 177 (224)
T 3h2s_A 118 ------------MILDFPESAASQPWYDGALYQYYEY-Q----FLQMNANVNWIGISPSEAFPSGPATS-YVAGK--DTL 177 (224)
T ss_dssp ------------GGGGCCGGGGGSTTHHHHHHHHHHH-H----HHTTCTTSCEEEEEECSBCCCCCCCC-EEEES--SBC
T ss_pred ------------ccccCCCCCccchhhHHHHHHHHHH-H----HHHhcCCCcEEEEcCccccCCCcccC-ceecc--ccc
Confidence 0000101112356899999987743 2 22234599999999999998743221 10000 000
Q ss_pred hHHhhhcCccchhhhhhhccc
Q 018819 328 FQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 328 ~~~~~~~~~~s~~~~a~~i~~ 348 (350)
........+++++++|+.+++
T Consensus 178 ~~~~~~~~~i~~~DvA~~~~~ 198 (224)
T 3h2s_A 178 LVGEDGQSHITTGNMALAILD 198 (224)
T ss_dssp CCCTTSCCBCCHHHHHHHHHH
T ss_pred ccCCCCCceEeHHHHHHHHHH
Confidence 000112346889999988765
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.5e-18 Score=150.42 Aligned_cols=186 Identities=17% Similarity=0.209 Sum_probs=117.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
..|++|||||+|+||+++++.|+++|.++|++++|+.+..++ ....++.++.+|++|+++++++++ .
T Consensus 22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~------~~~~~~~~~~~Dl~d~~~~~~~~~-------~ 88 (236)
T 3qvo_A 22 HMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHK------PYPTNSQIIMGDVLNHAALKQAMQ-------G 88 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCS------SCCTTEEEEECCTTCHHHHHHHHT-------T
T ss_pred cccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcc------cccCCcEEEEecCCCHHHHHHHhc-------C
Confidence 346999999999999999999999994489999998755322 123468899999999999988876 5
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
+|+||||+|.. ..+ ..++.+++.+.+.+ .++||++||..+..+. ++..
T Consensus 89 ~D~vv~~a~~~---------~~~--------------~~~~~~~~~~~~~~--~~~iV~iSS~~~~~~~-~~~~------ 136 (236)
T 3qvo_A 89 QDIVYANLTGE---------DLD--------------IQANSVIAAMKACD--VKRLIFVLSLGIYDEV-PGKF------ 136 (236)
T ss_dssp CSEEEEECCST---------THH--------------HHHHHHHHHHHHTT--CCEEEEECCCCC---------------
T ss_pred CCEEEEcCCCC---------chh--------------HHHHHHHHHHHHcC--CCEEEEEecceecCCC-Cccc------
Confidence 89999999851 111 23456777777665 4699999998765321 0000
Q ss_pred cccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhh
Q 018819 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLL 324 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~ 324 (350)
....+.........|..+|..+ .+.||++++|+||++.|+........ ...
T Consensus 137 ---------------~~~~~~~~~~~~~~~~~~~~~l------------~~~gi~~~~vrPg~i~~~~~~~~~~~--~~~ 187 (236)
T 3qvo_A 137 ---------------VEWNNAVIGEPLKPFRRAADAI------------EASGLEYTILRPAWLTDEDIIDYELT--SRN 187 (236)
T ss_dssp -----------------------CGGGHHHHHHHHHH------------HTSCSEEEEEEECEEECCSCCCCEEE--CTT
T ss_pred ---------------ccchhhcccchHHHHHHHHHHH------------HHCCCCEEEEeCCcccCCCCcceEEe--ccC
Confidence 0000000112234454443221 24599999999999988643210000 000
Q ss_pred hhhhHHhhhcCccchhhhhhhcccc
Q 018819 325 FPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 325 ~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.+ ....+++++|+|+.++++
T Consensus 188 ~~-----~~~~~i~~~DvA~~i~~l 207 (236)
T 3qvo_A 188 EP-----FKGTIVSRKSVAALITDI 207 (236)
T ss_dssp SC-----CSCSEEEHHHHHHHHHHH
T ss_pred CC-----CCCcEECHHHHHHHHHHH
Confidence 00 112357889998887653
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=99.76 E-value=5.6e-18 Score=157.02 Aligned_cols=180 Identities=14% Similarity=0.054 Sum_probs=127.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHc-CCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCC-HHHHHHHHHHHHHcCCC
Q 018819 87 GSVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS-LDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~-Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~-~~~v~~~~~~~~~~~g~ 164 (350)
+++|||||+|+||.+++++|+++ | +.|++++|+....+.. . ...++.++.+|++| .+.++++++ +
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~~~~----~-~~~~~~~~~~D~~~~~~~~~~~~~-------~ 67 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDH-YEVYGLDIGSDAISRF----L-NHPHFHFVEGDISIHSEWIEYHVK-------K 67 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTT-CEEEEEESCCGGGGGG----T-TCTTEEEEECCTTTCSHHHHHHHH-------H
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCC-CEEEEEeCCcchHHHh----h-cCCCeEEEeccccCcHHHHHhhcc-------C
Confidence 37999999999999999999998 7 5899999986543321 1 12468899999998 456666665 4
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
+|+|||+||.... ....++++..+++|+.++.++++++... +++||++||...+... .+. + .
T Consensus 68 ~d~vih~A~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~-------~~~~v~~SS~~v~g~~-~~~-~----~ 129 (345)
T 2bll_A 68 CDVVLPLVAIATP-----IEYTRNPLRVFELDFEENLRIIRYCVKY-------RKRIIFPSTSEVYGMC-SDK-Y----F 129 (345)
T ss_dssp CSEEEECBCCCCH-----HHHHHSHHHHHHHHTHHHHHHHHHHHHT-------TCEEEEECCGGGGBTC-CCS-S----B
T ss_pred CCEEEEcccccCc-----cchhcCHHHHHHHHHHHHHHHHHHHHHh-------CCeEEEEecHHHcCCC-CCC-C----c
Confidence 8999999997432 1123567789999999999999987542 1499999997654211 000 0 0
Q ss_pred cccccccccCCCCCCCcccCCCC-CCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 245 GDLRGFAGGLNGLNSSSMIDGGD-FDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
. +.. +.....+ ..+...|+.+|.+.+.+++.++.++ |+++++++||.|.+|..
T Consensus 130 ~----------e~~--~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~ilrp~~v~G~~~ 183 (345)
T 2bll_A 130 D----------EDH--SNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE----GLQFTLFRPFNWMGPRL 183 (345)
T ss_dssp C----------TTT--CCCBCCCTTCGGGHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECSEECSSC
T ss_pred C----------Ccc--cccccCcccCcccccHHHHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCCc
Confidence 0 000 0000001 1245689999999999999988775 89999999999988764
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.2e-18 Score=154.42 Aligned_cols=166 Identities=15% Similarity=0.119 Sum_probs=126.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
+++|||||+|+||.++++.|+++| +.|++++|+..... . . ++.++.+|++ .+++.++++ ++|
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~-~----~----~~~~~~~Dl~-~~~~~~~~~-------~~d 64 (311)
T 3m2p_A 3 LKIAVTGGTGFLGQYVVESIKNDG-NTPIILTRSIGNKA-I----N----DYEYRVSDYT-LEDLINQLN-------DVD 64 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCCC--------------CCEEEECCCC-HHHHHHHTT-------TCS
T ss_pred CEEEEECCCcHHHHHHHHHHHhCC-CEEEEEeCCCCccc-C----C----ceEEEEcccc-HHHHHHhhc-------CCC
Confidence 589999999999999999999999 59999999843322 1 1 5788999999 888887765 799
Q ss_pred EEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccc
Q 018819 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (350)
Q Consensus 167 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (350)
+|||+|+..... +++..+++|+.++.++++++... + -++||++||...+...
T Consensus 65 ~Vih~a~~~~~~---------~~~~~~~~n~~~~~~ll~a~~~~----~--~~r~v~~SS~~vyg~~------------- 116 (311)
T 3m2p_A 65 AVVHLAATRGSQ---------GKISEFHDNEILTQNLYDACYEN----N--ISNIVYASTISAYSDE------------- 116 (311)
T ss_dssp EEEECCCCCCSS---------SCGGGTHHHHHHHHHHHHHHHHT----T--CCEEEEEEEGGGCCCG-------------
T ss_pred EEEEccccCCCC---------ChHHHHHHHHHHHHHHHHHHHHc----C--CCEEEEEccHHHhCCC-------------
Confidence 999999985431 34567899999999999987543 2 2489999996544211
Q ss_pred cccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
...++.+..+..+...|+.+|.+.+.+++.++.+. |++++.+.||.+.++..
T Consensus 117 -----------~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----g~~~~ilRp~~v~G~~~ 168 (311)
T 3m2p_A 117 -----------TSLPWNEKELPLPDLMYGVSKLACEHIGNIYSRKK----GLCIKNLRFAHLYGFNE 168 (311)
T ss_dssp -----------GGCSBCTTSCCCCSSHHHHHHHHHHHHHHHHHHHS----CCEEEEEEECEEECSCC
T ss_pred -----------CCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHc----CCCEEEEeeCceeCcCC
Confidence 01122233334456789999999999999888764 89999999999998754
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.9e-18 Score=156.39 Aligned_cols=168 Identities=16% Similarity=0.177 Sum_probs=125.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHc--CCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 88 SVIITGASSGLGLATAKALAET--GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~--Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
++|||||+|+||.+++++|+++ | +.|++++|+....+ .+.++.+|++|.+++.++++.. ++
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~~~~-----------~~~~~~~D~~d~~~~~~~~~~~-----~~ 63 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGK-KNVIASDIVQRDTG-----------GIKFITLDVSNRDEIDRAVEKY-----SI 63 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCG-GGEEEEESSCCCCT-----------TCCEEECCTTCHHHHHHHHHHT-----TC
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCC-CEEEEecCCCcccc-----------CceEEEecCCCHHHHHHHHhhc-----CC
Confidence 3899999999999999999998 7 58888888643211 3568899999999998887752 69
Q ss_pred cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcc
Q 018819 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (350)
|+|||+|+.... ...++++..+++|+.++.++++++.+. + .++||++||...+.....
T Consensus 64 d~vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~a~~~~----~--~~~~v~~SS~~~~~~~~~---------- 121 (317)
T 3ajr_A 64 DAIFHLAGILSA------KGEKDPALAYKVNMNGTYNILEAAKQH----R--VEKVVIPSTIGVFGPETP---------- 121 (317)
T ss_dssp CEEEECCCCCHH------HHHHCHHHHHHHHHHHHHHHHHHHHHT----T--CCEEEEEEEGGGCCTTSC----------
T ss_pred cEEEECCcccCC------ccccChHHHhhhhhHHHHHHHHHHHHc----C--CCEEEEecCHHHhCCCCC----------
Confidence 999999997421 124567889999999999999987642 1 249999999876532100
Q ss_pred ccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCC
Q 018819 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~ 311 (350)
..+..+..+..+...|+.||.+.+.+++.++.++ |++++++.|+.+..+
T Consensus 122 -------------~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~lR~~~~~g~ 170 (317)
T 3ajr_A 122 -------------KNKVPSITITRPRTMFGVTKIAAELLGQYYYEKF----GLDVRSLRYPGIISY 170 (317)
T ss_dssp -------------SSSBCSSSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECEEECS
T ss_pred -------------CCCccccccCCCCchHHHHHHHHHHHHHHHHHhc----CCeEEEEecCcEecc
Confidence 0011122233456789999999999999888765 899999987666554
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=8.2e-18 Score=152.49 Aligned_cols=156 Identities=16% Similarity=0.186 Sum_probs=119.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
..+++|||||+|+||+++++.|+++| +.|++++|+ .+|++|.+++.++++.. +
T Consensus 11 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~---------------------~~Dl~d~~~~~~~~~~~-----~ 63 (292)
T 1vl0_A 11 HHMKILITGANGQLGREIQKQLKGKN-VEVIPTDVQ---------------------DLDITNVLAVNKFFNEK-----K 63 (292)
T ss_dssp -CEEEEEESTTSHHHHHHHHHHTTSS-EEEEEECTT---------------------TCCTTCHHHHHHHHHHH-----C
T ss_pred ccceEEEECCCChHHHHHHHHHHhCC-CeEEeccCc---------------------cCCCCCHHHHHHHHHhc-----C
Confidence 34589999999999999999999999 699999886 38999999999888765 6
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
+|+||||||.... +.+.++++..+++|+.++.++++++.+. +.+||++||.+.+.+. .
T Consensus 64 ~d~vih~A~~~~~-----~~~~~~~~~~~~~nv~~~~~l~~a~~~~-------~~~iv~~SS~~v~~~~-~--------- 121 (292)
T 1vl0_A 64 PNVVINCAAHTAV-----DKCEEQYDLAYKINAIGPKNLAAAAYSV-------GAEIVQISTDYVFDGE-A--------- 121 (292)
T ss_dssp CSEEEECCCCCCH-----HHHHHCHHHHHHHHTHHHHHHHHHHHHH-------TCEEEEEEEGGGSCSC-C---------
T ss_pred CCEEEECCccCCH-----HHHhcCHHHHHHHHHHHHHHHHHHHHHc-------CCeEEEechHHeECCC-C---------
Confidence 9999999997422 2245678899999999999999998763 1399999998654221 0
Q ss_pred cccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCC
Q 018819 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~ 311 (350)
..+..+..+..+...|+.+|.+.+.+++.++. .++.+.|+.|.++
T Consensus 122 --------------~~~~~E~~~~~~~~~Y~~sK~~~E~~~~~~~~--------~~~~lR~~~v~G~ 166 (292)
T 1vl0_A 122 --------------KEPITEFDEVNPQSAYGKTKLEGENFVKALNP--------KYYIVRTAWLYGD 166 (292)
T ss_dssp --------------SSCBCTTSCCCCCSHHHHHHHHHHHHHHHHCS--------SEEEEEECSEESS
T ss_pred --------------CCCCCCCCCCCCccHHHHHHHHHHHHHHhhCC--------CeEEEeeeeeeCC
Confidence 01122222334567899999999888876532 3677888888765
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=8.1e-18 Score=156.21 Aligned_cols=182 Identities=13% Similarity=0.080 Sum_probs=125.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.++++++|||||+|+||+++++.|+++| +.|++++|+..........+. ...++.++.+|+++.. +
T Consensus 24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~------------~ 89 (343)
T 2b69_A 24 EKDRKRILITGGAGFVGSHLTDKLMMDG-HEVTVVDNFFTGRKRNVEHWI-GHENFELINHDVVEPL------------Y 89 (343)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCGGGTGGGT-TCTTEEEEECCTTSCC------------C
T ss_pred ccCCCEEEEEcCccHHHHHHHHHHHHCC-CEEEEEeCCCccchhhhhhhc-cCCceEEEeCccCChh------------h
Confidence 4577899999999999999999999999 589999886422111111111 1346889999998752 3
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
.++|+|||+||..... . ..++++..+++|+.++.++++++... +.+||++||...+ +...+.
T Consensus 90 ~~~d~vih~A~~~~~~-~----~~~~~~~~~~~n~~~~~~l~~a~~~~-------~~~~v~~SS~~v~-g~~~~~----- 151 (343)
T 2b69_A 90 IEVDQIYHLASPASPP-N----YMYNPIKTLKTNTIGTLNMLGLAKRV-------GARLLLASTSEVY-GDPEVH----- 151 (343)
T ss_dssp CCCSEEEECCSCCSHH-H----HTTCHHHHHHHHHHHHHHHHHHHHHH-------TCEEEEEEEGGGG-BSCSSS-----
T ss_pred cCCCEEEECccccCch-h----hhhCHHHHHHHHHHHHHHHHHHHHHh-------CCcEEEECcHHHh-CCCCCC-----
Confidence 5799999999974321 0 11345678999999999999988653 1389999997543 210000
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
..+...+.+..+..+...|+.+|.+.+.+++.++.+. |+++++++||.|.+|..
T Consensus 152 -------------~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----~~~~~ilrp~~v~G~~~ 205 (343)
T 2b69_A 152 -------------PQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQE----GVEVRVARIFNTFGPRM 205 (343)
T ss_dssp -------------SBCTTCCCBCCSSSTTHHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECCEECTTC
T ss_pred -------------CCcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHh----CCcEEEEEEcceeCcCC
Confidence 0000001111233456789999999999999888775 89999999999998854
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-17 Score=168.85 Aligned_cols=191 Identities=14% Similarity=0.123 Sum_probs=131.9
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhcc-CCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~-~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
+.++++++|||||+|+||++++++|+++| +.|++++|+.....+..+.+.. .+.++.++.+|++|.+++.++++..
T Consensus 7 ~~~~~~~ilVTGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 83 (699)
T 1z45_A 7 SESTSKIVLVTGGAGYIGSHTVVELIENG-YDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEY-- 83 (699)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHS--
T ss_pred cccCCCEEEEECCCCHHHHHHHHHHHHCc-CEEEEEECCCcchHHHHHHHhhccCCceEEEEcCCCCHHHHHHHHHhC--
Confidence 35678899999999999999999999999 5899988864321111111110 1346788999999999998887753
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
++|+||||||.... . ...+.....+++|+.++.++++++... + .++||++||.+.+... ...
T Consensus 84 ---~~D~Vih~A~~~~~-~----~~~~~~~~~~~~Nv~gt~~ll~a~~~~----~--~~~iV~~SS~~vyg~~-~~~--- 145 (699)
T 1z45_A 84 ---KIDSVIHFAGLKAV-G----ESTQIPLRYYHNNILGTVVLLELMQQY----N--VSKFVFSSSATVYGDA-TRF--- 145 (699)
T ss_dssp ---CCCEEEECCSCCCH-H----HHHHSHHHHHHHHHHHHHHHHHHHHHH----T--CCEEEEEEEGGGGCCG-GGS---
T ss_pred ---CCCEEEECCcccCc-C----ccccCHHHHHHHHHHHHHHHHHHHHHc----C--CCEEEEECcHHHhCCC-ccc---
Confidence 69999999997432 1 122345678999999999998876543 1 2599999997653210 000
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCC
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~ 311 (350)
....+..+..+..+...|+.||++.+.+++.++.+. ..|++++.++|+.+..+
T Consensus 146 ----------------~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--~~g~~~~ilR~~~vyG~ 198 (699)
T 1z45_A 146 ----------------PNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSD--KKSWKFAILRYFNPIGA 198 (699)
T ss_dssp ----------------TTCCSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHS--TTSCEEEEEEECEEECC
T ss_pred ----------------cccCCccccCCCCCCChHHHHHHHHHHHHHHHHHhc--cCCCcEEEEEeccccCC
Confidence 000111222233456789999999999999988774 34899999999888765
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.3e-18 Score=153.42 Aligned_cols=142 Identities=17% Similarity=0.088 Sum_probs=108.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
++|||||+|+||+++++.|+ +| ++|++++|+... . .+ +.+|++|++++.++++.+ ++|+
T Consensus 2 ~ilVtGatG~iG~~l~~~L~-~g-~~V~~~~r~~~~--------~-~~-----~~~Dl~~~~~~~~~~~~~-----~~d~ 60 (273)
T 2ggs_A 2 RTLITGASGQLGIELSRLLS-ER-HEVIKVYNSSEI--------Q-GG-----YKLDLTDFPRLEDFIIKK-----RPDV 60 (273)
T ss_dssp CEEEETTTSHHHHHHHHHHT-TT-SCEEEEESSSCC--------T-TC-----EECCTTSHHHHHHHHHHH-----CCSE
T ss_pred EEEEECCCChhHHHHHHHHh-cC-CeEEEecCCCcC--------C-CC-----ceeccCCHHHHHHHHHhc-----CCCE
Confidence 58999999999999999999 48 589999997631 0 11 789999999999988875 6999
Q ss_pred EEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcccc
Q 018819 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (350)
Q Consensus 168 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (350)
||||||.... +.+.++++..+++|+.++.++++++.+ . +++||++||..++.+. .+
T Consensus 61 vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~----~---~~~iv~~SS~~~~~~~-~~----------- 116 (273)
T 2ggs_A 61 IINAAAMTDV-----DKCEIEKEKAYKINAEAVRHIVRAGKV----I---DSYIVHISTDYVFDGE-KG----------- 116 (273)
T ss_dssp EEECCCCCCH-----HHHHHCHHHHHHHHTHHHHHHHHHHHH----T---TCEEEEEEEGGGSCSS-SC-----------
T ss_pred EEECCcccCh-----hhhhhCHHHHHHHhHHHHHHHHHHHHH----h---CCeEEEEecceeEcCC-CC-----------
Confidence 9999997532 224577899999999999999999864 2 2499999998775321 00
Q ss_pred ccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHH
Q 018819 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQE 287 (350)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~ 287 (350)
+..+..+..+...|+.+|++.+.+++.
T Consensus 117 -------------~~~e~~~~~~~~~Y~~sK~~~e~~~~~ 143 (273)
T 2ggs_A 117 -------------NYKEEDIPNPINYYGLSKLLGETFALQ 143 (273)
T ss_dssp -------------SBCTTSCCCCSSHHHHHHHHHHHHHCC
T ss_pred -------------CcCCCCCCCCCCHHHHHHHHHHHHHhC
Confidence 111222233467899999999888865
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.7e-17 Score=151.04 Aligned_cols=165 Identities=17% Similarity=0.146 Sum_probs=124.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.++++|||||+|+||.+++++|+++| +.|+++.|+. .+|++|.+++.++++.. +
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~v~~~~r~~--------------------~~D~~d~~~~~~~~~~~-----~ 55 (321)
T 1e6u_A 2 AKQRVFIAGHRGMVGSAIRRQLEQRG-DVELVLRTRD--------------------ELNLLDSRAVHDFFASE-----R 55 (321)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCT-TEEEECCCTT--------------------TCCTTCHHHHHHHHHHH-----C
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCC-CeEEEEecCc--------------------cCCccCHHHHHHHHHhc-----C
Confidence 34689999999999999999999999 4888887752 37999999999888765 6
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
+|+|||+|+.... .....++++..+++|+.++.++++++... + .++||++||...+... ..
T Consensus 56 ~d~vih~a~~~~~----~~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~--~~~~v~~SS~~vyg~~-~~-------- 116 (321)
T 1e6u_A 56 IDQVYLAAAKVGG----IVANNTYPADFIYQNMMIESNIIHAAHQN----D--VNKLLFLGSSCIYPKL-AK-------- 116 (321)
T ss_dssp CSEEEECCCCCCC----HHHHHHCHHHHHHHHHHHHHHHHHHHHHT----T--CCEEEEECCGGGSCTT-CC--------
T ss_pred CCEEEEcCeecCC----cchhhhCHHHHHHHHHHHHHHHHHHHHHh----C--CCeEEEEccHHHcCCC-CC--------
Confidence 9999999997421 01234567788999999999999988652 1 2499999998654211 00
Q ss_pred cccccccccCCCCCCCcccCC-----CCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 245 GDLRGFAGGLNGLNSSSMIDG-----GDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.+..+. ...+....|+.+|.+.+.+++.++.++ |+++++++||.|.+|..
T Consensus 117 ---------------~~~~E~~~~~~~~~p~~~~Y~~sK~~~E~~~~~~~~~~----~~~~~ilrp~~v~G~~~ 171 (321)
T 1e6u_A 117 ---------------QPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQY----GRDYRSVMPTNLYGPHD 171 (321)
T ss_dssp ---------------SSBCGGGTTSSCCCGGGHHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECEEESTTC
T ss_pred ---------------CCcCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHh----CCCEEEEEeCCcCCcCC
Confidence 000111 112234689999999999999988775 89999999999998754
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=4e-17 Score=164.61 Aligned_cols=177 Identities=14% Similarity=0.070 Sum_probs=130.3
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHc-CCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHH-HHHHHHHHHHc
Q 018819 84 LRKGSVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDS-VRQFVDTFRRS 161 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~-Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~-v~~~~~~~~~~ 161 (350)
++++++|||||+|+||.++++.|+++ | +.|++++|+....+. +. ...++.++.+|++|.++ ++++++
T Consensus 313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g-~~V~~~~r~~~~~~~----~~-~~~~v~~v~~Dl~d~~~~~~~~~~----- 381 (660)
T 1z7e_A 313 RRRTRVLILGVNGFIGNHLTERLLREDH-YEVYGLDIGSDAISR----FL-NHPHFHFVEGDISIHSEWIEYHVK----- 381 (660)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHSSS-EEEEEEESCCTTTGG----GT-TCTTEEEEECCTTTCHHHHHHHHH-----
T ss_pred ccCceEEEEcCCcHHHHHHHHHHHhcCC-CEEEEEEcCchhhhh----hc-cCCceEEEECCCCCcHHHHHHhhc-----
Confidence 46789999999999999999999998 7 699999997654322 11 13468899999999765 555554
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++|+||||||.... ....++++..+++|+.++.++++++... + ++||++||...+... .+
T Consensus 382 --~~D~Vih~Aa~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~aa~~~----~---~r~V~~SS~~vyg~~-~~----- 441 (660)
T 1z7e_A 382 --KCDVVLPLVAIATP-----IEYTRNPLRVFELDFEENLRIIRYCVKY----R---KRIIFPSTSEVYGMC-SD----- 441 (660)
T ss_dssp --HCSEEEECCCCCCT-----HHHHHSHHHHHHHHTHHHHHHHHHHHHT----T---CEEEEECCGGGGBTC-CS-----
T ss_pred --CCCEEEECceecCc-----cccccCHHHHHHhhhHHHHHHHHHHHHh----C---CEEEEEecHHHcCCC-CC-----
Confidence 58999999997532 1124567889999999999999988653 1 499999997654211 00
Q ss_pred CCccccccccccCCCCCCCcccCCC------C-CCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGG------D-FDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.++.+.. + ......|+.||.+.+.+++.++.++ |+++++++||.|.++..
T Consensus 442 ------------------~~~~E~~~~~~~~p~~~p~~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilRpg~v~Gp~~ 498 (660)
T 1z7e_A 442 ------------------KYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE----GLQFTLFRPFNWMGPRL 498 (660)
T ss_dssp ------------------SSBCTTTCCEEECCTTCTTHHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECSEESTTS
T ss_pred ------------------cccCCCccccccCcccCCCCCcHHHHHHHHHHHHHHHHHc----CCCEEEECCCcccCCCc
Confidence 0001110 0 1244589999999999999988775 89999999999998764
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-17 Score=148.96 Aligned_cols=154 Identities=17% Similarity=0.144 Sum_probs=119.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
++|||||+|+||+++++.|+++| ++|++++|. .+|++|.+++.++++.. ++|+
T Consensus 7 ~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~---------------------~~D~~d~~~~~~~~~~~-----~~d~ 59 (287)
T 3sc6_A 7 RVIITGANGQLGKQLQEELNPEE-YDIYPFDKK---------------------LLDITNISQVQQVVQEI-----RPHI 59 (287)
T ss_dssp EEEEESTTSHHHHHHHHHSCTTT-EEEEEECTT---------------------TSCTTCHHHHHHHHHHH-----CCSE
T ss_pred EEEEECCCCHHHHHHHHHHHhCC-CEEEEeccc---------------------ccCCCCHHHHHHHHHhc-----CCCE
Confidence 79999999999999999999999 699999982 38999999999998876 6999
Q ss_pred EEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcccc
Q 018819 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (350)
Q Consensus 168 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (350)
|||+||.... +.+.++++..+++|+.++.++++++.+. +.+||++||...+.+.
T Consensus 60 vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~-------~~~~v~~SS~~vy~~~-------------- 113 (287)
T 3sc6_A 60 IIHCAAYTKV-----DQAEKERDLAYVINAIGARNVAVASQLV-------GAKLVYISTDYVFQGD-------------- 113 (287)
T ss_dssp EEECCCCCCH-----HHHTTCHHHHHHHHTHHHHHHHHHHHHH-------TCEEEEEEEGGGSCCC--------------
T ss_pred EEECCcccCh-----HHHhcCHHHHHHHHHHHHHHHHHHHHHc-------CCeEEEEchhhhcCCC--------------
Confidence 9999998532 1122567889999999999999998653 2489999998654221
Q ss_pred ccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
...++.+..+..+...|+.+|.+.+.+++.++. +.+.++|+.|.+|.
T Consensus 114 ----------~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~--------~~~ilR~~~v~G~~ 160 (287)
T 3sc6_A 114 ----------RPEGYDEFHNPAPINIYGASKYAGEQFVKELHN--------KYFIVRTSWLYGKY 160 (287)
T ss_dssp ----------CSSCBCTTSCCCCCSHHHHHHHHHHHHHHHHCS--------SEEEEEECSEECSS
T ss_pred ----------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCC--------CcEEEeeeeecCCC
Confidence 011233333445667999999998888775432 45889999998874
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=3.4e-17 Score=149.41 Aligned_cols=175 Identities=11% Similarity=-0.022 Sum_probs=124.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
++|||||+|+||++++++|+++|.+.|++++|+..... ...+. .+. +.+|++|.+.++++++.. .++++|+
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~~----~~~-~~~d~~~~~~~~~~~~~~--~~~~~d~ 71 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--FVNLV----DLN-IADYMDKEDFLIQIMAGE--EFGDVEA 71 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGG--GHHHH----TSC-CSEEEEHHHHHHHHHTTC--CCSSCCE
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCch--hhhcC----cce-eccccccHHHHHHHHhcc--ccCCCcE
Confidence 38999999999999999999999448888888653311 01111 122 678999988887766521 0236999
Q ss_pred EEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcccc
Q 018819 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (350)
Q Consensus 168 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (350)
|||+||.... +.++++..+++|+.++.++++++.+. + . +||++||...+ +...+
T Consensus 72 vi~~a~~~~~-------~~~~~~~~~~~n~~~~~~l~~a~~~~----~--~-~~v~~SS~~v~-g~~~~----------- 125 (310)
T 1eq2_A 72 IFHEGACSST-------TEWDGKYMMDNNYQYSKELLHYCLER----E--I-PFLYASSAATY-GGRTS----------- 125 (310)
T ss_dssp EEECCSCCCT-------TCCCHHHHHHHTHHHHHHHHHHHHHH----T--C-CEEEEEEGGGG-TTCCS-----------
T ss_pred EEECcccccC-------cccCHHHHHHHHHHHHHHHHHHHHHc----C--C-eEEEEeeHHHh-CCCCC-----------
Confidence 9999997532 22356788999999999999998653 1 3 89999998653 21000
Q ss_pred ccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.+..+..+..+...|+.+|.+.+.+++.++.++ |+++++++||.|.+|..
T Consensus 126 ------------~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~----g~~~~~lrp~~v~G~~~ 175 (310)
T 1eq2_A 126 ------------DFIESREYEKPLNVYGYSKFLFDEYVRQILPEA----NSQIVGFRYFNVYGPRE 175 (310)
T ss_dssp ------------CBCSSGGGCCCSSHHHHHHHHHHHHHHHHGGGC----SSCEEEEEECEEESSSC
T ss_pred ------------CCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHc----CCCEEEEeCCcEECcCC
Confidence 011111122345689999999999998877653 89999999999998864
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.9e-17 Score=150.03 Aligned_cols=169 Identities=11% Similarity=0.018 Sum_probs=121.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
++++++|||||+|+||+++++.|.++|. +.. .....+.++.+|++|.+++.++++..
T Consensus 4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-------~~~-----------~~~~~~~~~~~D~~d~~~~~~~~~~~----- 60 (319)
T 4b8w_A 4 FQSMRILVTGGSGLVGKAIQKVVADGAG-------LPG-----------EDWVFVSSKDADLTDTAQTRALFEKV----- 60 (319)
T ss_dssp CCCCEEEEETCSSHHHHHHHHHHHTTTC-------CTT-----------CEEEECCTTTCCTTSHHHHHHHHHHS-----
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhcCC-------ccc-----------ccccccCceecccCCHHHHHHHHhhc-----
Confidence 5678999999999999999999999994 110 00112344578999999999888753
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCC
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (350)
++|+|||+|+..... ..+.+++...+++|+.++.++++++... + -++||++||...+ +...+
T Consensus 61 ~~d~Vih~A~~~~~~----~~~~~~~~~~~~~nv~gt~~ll~a~~~~----~--~~~~v~~SS~~vy-g~~~~------- 122 (319)
T 4b8w_A 61 QPTHVIHLAAMVGGL----FRNIKYNLDFWRKNVHMNDNVLHSAFEV----G--ARKVVSCLSTCIF-PDKTT------- 122 (319)
T ss_dssp CCSEEEECCCCCCCH----HHHTTCHHHHHHHHHHHHHHHHHHHHHT----T--CSEEEEECCGGGS-CSSCC-------
T ss_pred CCCEEEECceecccc----cccccCHHHHHHHHHHHHHHHHHHHHHc----C--CCeEEEEcchhhc-CCCCC-------
Confidence 699999999974210 1123456778999999999999987543 1 2489999998644 21000
Q ss_pred ccccccccccCCCCCCCcccCC-----CCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 244 LGDLRGFAGGLNGLNSSSMIDG-----GDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.+..+. .+.+....|+.+|.+.+.+++.++.+. |++++.++|+.|.+|..
T Consensus 123 ----------------~~~~E~~~~~~~~~p~~~~Y~~sK~~~E~~~~~~~~~~----~~~~~ilRp~~v~Gp~~ 177 (319)
T 4b8w_A 123 ----------------YPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQY----GCTFTAVIPTNVFGPHD 177 (319)
T ss_dssp ----------------SSBCGGGGGBSCCCSSSHHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECEEECTTC
T ss_pred ----------------CCccccccccCCCCCCcchHHHHHHHHHHHHHHHHHhh----CCCEEEEeeccccCCCC
Confidence 001111 112333479999999999999888776 89999999999998764
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=7.2e-17 Score=146.69 Aligned_cols=158 Identities=13% Similarity=0.046 Sum_probs=118.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
++|||||+|+||.++++.|+ +| +.|++++|+.. ++.+|++|.+++.++++.. ++|+
T Consensus 2 ~ilVtGatG~iG~~l~~~L~-~g-~~V~~~~r~~~-----------------~~~~D~~d~~~~~~~~~~~-----~~d~ 57 (299)
T 1n2s_A 2 NILLFGKTGQVGWELQRSLA-PV-GNLIALDVHSK-----------------EFCGDFSNPKGVAETVRKL-----RPDV 57 (299)
T ss_dssp EEEEECTTSHHHHHHHHHTT-TT-SEEEEECTTCS-----------------SSCCCTTCHHHHHHHHHHH-----CCSE
T ss_pred eEEEECCCCHHHHHHHHHhh-cC-CeEEEeccccc-----------------cccccCCCHHHHHHHHHhc-----CCCE
Confidence 69999999999999999999 89 59999998751 3578999999999888764 6999
Q ss_pred EEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcccc
Q 018819 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (350)
Q Consensus 168 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (350)
|||+||.... ..+.++++..+++|+.++.++++++.. . +.+||++||...+.+. .
T Consensus 58 vih~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~a~~~----~---~~~~v~~SS~~vy~~~-~------------ 112 (299)
T 1n2s_A 58 IVNAAAHTAV-----DKAESEPELAQLLNATSVEAIAKAANE----T---GAWVVHYSTDYVFPGT-G------------ 112 (299)
T ss_dssp EEECCCCCCH-----HHHTTCHHHHHHHHTHHHHHHHHHHTT----T---TCEEEEEEEGGGSCCC-T------------
T ss_pred EEECcccCCH-----hhhhcCHHHHHHHHHHHHHHHHHHHHH----c---CCcEEEEecccEEeCC-C------------
Confidence 9999997432 112345678899999999999998743 2 2389999998654221 0
Q ss_pred ccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
..+..+..+..+...|+.+|.+.+.+++.++ .+++.++||.+.++..
T Consensus 113 -----------~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~--------~~~~ilRp~~v~G~~~ 159 (299)
T 1n2s_A 113 -----------DIPWQETDATSPLNVYGKTKLAGEKALQDNC--------PKHLIFRTSWVYAGKG 159 (299)
T ss_dssp -----------TCCBCTTSCCCCSSHHHHHHHHHHHHHHHHC--------SSEEEEEECSEECSSS
T ss_pred -----------CCCCCCCCCCCCccHHHHHHHHHHHHHHHhC--------CCeEEEeeeeecCCCc
Confidence 0111222233445689999999888776542 2789999999998753
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-17 Score=150.33 Aligned_cols=161 Identities=14% Similarity=0.023 Sum_probs=116.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+++++|||| +|+||.++++.|+++| +.|++++|+.+.. ..++.++.+|++|.+++.++++ ++
T Consensus 2 ~~~~ilVtG-aG~iG~~l~~~L~~~g-~~V~~~~r~~~~~----------~~~~~~~~~Dl~d~~~~~~~~~------~~ 63 (286)
T 3gpi_A 2 SLSKILIAG-CGDLGLELARRLTAQG-HEVTGLRRSAQPM----------PAGVQTLIADVTRPDTLASIVH------LR 63 (286)
T ss_dssp CCCCEEEEC-CSHHHHHHHHHHHHTT-CCEEEEECTTSCC----------CTTCCEEECCTTCGGGCTTGGG------GC
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCC-CEEEEEeCCcccc----------ccCCceEEccCCChHHHHHhhc------CC
Confidence 356899999 5999999999999999 5899999975441 2467889999999998877665 36
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
+|+|||+|+.. .++++..+++|+.++.++++++. +.+ .++||++||...+...
T Consensus 64 ~d~vih~a~~~----------~~~~~~~~~~n~~~~~~ll~a~~----~~~--~~~~v~~SS~~vyg~~----------- 116 (286)
T 3gpi_A 64 PEILVYCVAAS----------EYSDEHYRLSYVEGLRNTLSALE----GAP--LQHVFFVSSTGVYGQE----------- 116 (286)
T ss_dssp CSEEEECHHHH----------HHC-----CCSHHHHHHHHHHTT----TSC--CCEEEEEEEGGGCCCC-----------
T ss_pred CCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHHHHHh----hCC--CCEEEEEcccEEEcCC-----------
Confidence 99999999863 23456788999999999998875 222 3599999998654211
Q ss_pred cccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
...+..+..+..+...|+.+|.+.+.+ +. + ++++.+.||.+.++..
T Consensus 117 -------------~~~~~~E~~~~~p~~~Y~~sK~~~E~~-~~----~-----~~~~ilR~~~v~G~~~ 162 (286)
T 3gpi_A 117 -------------VEEWLDEDTPPIAKDFSGKRMLEAEAL-LA----A-----YSSTILRFSGIYGPGR 162 (286)
T ss_dssp -------------CSSEECTTSCCCCCSHHHHHHHHHHHH-GG----G-----SSEEEEEECEEEBTTB
T ss_pred -------------CCCCCCCCCCCCCCChhhHHHHHHHHH-Hh----c-----CCeEEEecccccCCCc
Confidence 011222333445567899999997665 32 1 7899999999988753
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-16 Score=143.18 Aligned_cols=145 Identities=17% Similarity=0.140 Sum_probs=111.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHc--CCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 87 GSVIITGASSGLGLATAKALAET--GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~--Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
|++|||||+|+||+++++.|+++ | ++|++++|+....+.+.. ..+.++.+|++|++++.++++ .
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~~~~~l~~------~~~~~~~~D~~d~~~l~~~~~-------~ 66 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPA-SQIIAIVRNVEKASTLAD------QGVEVRHGDYNQPESLQKAFA-------G 66 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCG-GGEEEEESCTTTTHHHHH------TTCEEEECCTTCHHHHHHHTT-------T
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCC-CeEEEEEcCHHHHhHHhh------cCCeEEEeccCCHHHHHHHHh-------c
Confidence 36999999999999999999998 8 589999998655443321 257789999999998887765 5
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
+|+|||+|+.. . . + ++|+.++.++++++... + .++||++||.....
T Consensus 67 ~d~vi~~a~~~-~-------~-~------~~n~~~~~~l~~a~~~~----~--~~~~v~~Ss~~~~~------------- 112 (287)
T 2jl1_A 67 VSKLLFISGPH-Y-------D-N------TLLIVQHANVVKAARDA----G--VKHIAYTGYAFAEE------------- 112 (287)
T ss_dssp CSEEEECCCCC-S-------C-H------HHHHHHHHHHHHHHHHT----T--CSEEEEEEETTGGG-------------
T ss_pred CCEEEEcCCCC-c-------C-c------hHHHHHHHHHHHHHHHc----C--CCEEEEECCCCCCC-------------
Confidence 89999999852 1 1 1 57889999998887532 2 24999999976531
Q ss_pred cccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
....|+.+|.+.+.+.+ + .|++++.++||++.++.
T Consensus 113 -------------------------~~~~y~~~K~~~E~~~~----~----~~~~~~ilrp~~~~~~~ 147 (287)
T 2jl1_A 113 -------------------------SIIPLAHVHLATEYAIR----T----TNIPYTFLRNALYTDFF 147 (287)
T ss_dssp -------------------------CCSTHHHHHHHHHHHHH----H----TTCCEEEEEECCBHHHH
T ss_pred -------------------------CCCchHHHHHHHHHHHH----H----cCCCeEEEECCEecccc
Confidence 11379999999887764 2 38999999999987653
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.6e-17 Score=150.94 Aligned_cols=173 Identities=13% Similarity=0.022 Sum_probs=118.3
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhcc--CCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM--AKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~--~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+.++++|||||+|+||.++++.|+++| +.|++++|+..........+.. ...++.++.+|++
T Consensus 5 ~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~--------------- 68 (321)
T 3vps_A 5 TLKHRILITGGAGFIGGHLARALVASG-EEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLS--------------- 68 (321)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT-CCEEEECCCSSCCSSCCTTSSEEECSCGGGCCHHHHT---------------
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHCC-CEEEEEecCCcccccchhhhhhhccCCCeeEEeCccc---------------
Confidence 356799999999999999999999999 5899999875410000001110 1124555666665
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++|+|||+|+...... ..++....++ |+.++.++++++...- .++||++||...+...
T Consensus 69 --~~d~vi~~a~~~~~~~-----~~~~~~~~~~-n~~~~~~ll~a~~~~~------v~~~v~~SS~~v~~~~-------- 126 (321)
T 3vps_A 69 --DVRLVYHLASHKSVPR-----SFKQPLDYLD-NVDSGRHLLALCTSVG------VPKVVVGSTCEVYGQA-------- 126 (321)
T ss_dssp --TEEEEEECCCCCCHHH-----HTTSTTTTHH-HHHHHHHHHHHHHHHT------CCEEEEEEEGGGGCSC--------
T ss_pred --cCCEEEECCccCChHH-----HHhCHHHHHH-HHHHHHHHHHHHHHcC------CCeEEEecCHHHhCCC--------
Confidence 6999999999753211 1112233456 9999999999986542 1499999998754211
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCc-EEEEeeCCcccCCccc
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGI-AFASLYPGCIATTGLF 314 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi-~v~~v~PG~v~t~~~~ 314 (350)
...+..+..+..+...|+.+|.+.+.+++.++.+. |+ +++.++|+.+.+|...
T Consensus 127 ----------------~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~~~~~~ilRp~~v~G~~~~ 180 (321)
T 3vps_A 127 ----------------DTLPTPEDSPLSPRSPYAASKVGLEMVAGAHQRAS----VAPEVGIVRFFNVYGPGER 180 (321)
T ss_dssp ----------------SSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHSS----SSCEEEEEEECEEECTTCC
T ss_pred ----------------CCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHc----CCCceEEEEeccccCcCCC
Confidence 11122233344566789999999999999888764 89 9999999999988643
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.8e-16 Score=153.63 Aligned_cols=179 Identities=19% Similarity=0.122 Sum_probs=124.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhH---HHHHHHHhc---------cCCCceEEEEccCCCHHHHHH
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK---AERAAKSAG---------MAKENYTIMHLDLASLDSVRQ 153 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~---~~~~~~~l~---------~~~~~v~~~~~Dvs~~~~v~~ 153 (350)
.+++|||||+|+||.+++++|.+.| ++|+++.|+... .+.+.+.+. ....++.++.+|++|++++.
T Consensus 150 ~~~VLVTGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~- 227 (508)
T 4f6l_B 150 LGNTLLTGATGFLGAYLIEALQGYS-HRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV- 227 (508)
T ss_dssp CEEEEESCTTSHHHHHHHHHTBTTE-EEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCC-
T ss_pred CCeEEEECCccchHHHHHHHHHhcC-CEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCC-
Confidence 4689999999999999999999889 699999998652 222222221 12457999999999987776
Q ss_pred HHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCC
Q 018819 154 FVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNT 233 (350)
Q Consensus 154 ~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~ 233 (350)
...++|+|||||+.... ...++..+++|+.++.++++++.. . ..+||++||... |.
T Consensus 228 -------~~~~~D~Vih~Aa~~~~--------~~~~~~~~~~Nv~gt~~ll~~a~~---~----~~~~v~iSS~~v--G~ 283 (508)
T 4f6l_B 228 -------LPENMDTIIHAGARTDH--------FGDDDEFEKVNVQGTVDVIRLAQQ---H----HARLIYVSTISV--GT 283 (508)
T ss_dssp -------CSSCCSEEEECCCC----------------CCHHHHHHHHHHHHHHHHT---T----TCEEEEEEESCT--TS
T ss_pred -------CccCCCEEEECCceecC--------CCCHHHHhhhHHHHHHHHHHHHHh---C----CCcEEEeCChhh--cc
Confidence 34589999999997531 234567889999999999998865 1 259999999876 32
Q ss_pred CCCCCCCCCCccccccccccCCCCCCCcccCCCC---CCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccC
Q 018819 234 LAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGD---FDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIAT 310 (350)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t 310 (350)
...... ...++.+..+ ......|+.+|.+.+.+++.++. .|++++.+.||.|.+
T Consensus 284 ~~~~~~------------------~~~~~~E~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-----~gi~~~ilRp~~v~G 340 (508)
T 4f6l_B 284 YFDIDT------------------EDVTFSEADVYKGQLLTSPYTRSKFYSELKVLEAVN-----NGLDGRIVRVGNLTS 340 (508)
T ss_dssp EECTTC------------------SCCEECTTCSCSSBCCCSHHHHHHHHHHHHHHHHHH-----TTCEEEEEEECCEES
T ss_pred CCccCC------------------cCcccccccccccccCCCcHHHHHHHHHHHHHHHHH-----cCCCEEEEecceecc
Confidence 111000 0111111111 12457899999999988887543 389999999999988
Q ss_pred Ccc
Q 018819 311 TGL 313 (350)
Q Consensus 311 ~~~ 313 (350)
+..
T Consensus 341 ~~~ 343 (508)
T 4f6l_B 341 PYN 343 (508)
T ss_dssp CSS
T ss_pred CCC
Confidence 753
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-15 Score=137.69 Aligned_cols=141 Identities=18% Similarity=0.203 Sum_probs=103.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHc--CCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 88 SVIITGASSGLGLATAKALAET--GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~--Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
++|||||+|+||+++++.|+++ | ++|++++|+....+.... ..+.++.+|++|++++.++++ .+
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~~~~~~~~------~~~~~~~~D~~d~~~~~~~~~-------~~ 66 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPA-SQIVAIVRNPAKAQALAA------QGITVRQADYGDEAALTSALQ-------GV 66 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCG-GGEEEEESCTTTCHHHHH------TTCEEEECCTTCHHHHHHHTT-------TC
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCC-ceEEEEEcChHhhhhhhc------CCCeEEEcCCCCHHHHHHHHh-------CC
Confidence 3799999999999999999998 8 589999998655443321 247789999999998887764 58
Q ss_pred cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcc
Q 018819 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (350)
|+|||+||.. . ..|+.++.++++++... + .++||++||.....
T Consensus 67 d~vi~~a~~~-~----------------~~~~~~~~~l~~a~~~~----~--~~~~v~~Ss~~~~~-------------- 109 (286)
T 2zcu_A 67 EKLLLISSSE-V----------------GQRAPQHRNVINAAKAA----G--VKFIAYTSLLHADT-------------- 109 (286)
T ss_dssp SEEEECC-------------------------CHHHHHHHHHHHH----T--CCEEEEEEETTTTT--------------
T ss_pred CEEEEeCCCC-c----------------hHHHHHHHHHHHHHHHc----C--CCEEEEECCCCCCC--------------
Confidence 9999999852 1 02666777777776543 2 24999999976531
Q ss_pred ccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCC
Q 018819 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~ 311 (350)
....|+.+|.+.+.+++. . |++++.++||++.++
T Consensus 110 ------------------------~~~~y~~sK~~~e~~~~~----~----~~~~~ilrp~~~~~~ 143 (286)
T 2zcu_A 110 ------------------------SPLGLADEHIETEKMLAD----S----GIVYTLLRNGWYSEN 143 (286)
T ss_dssp ------------------------CCSTTHHHHHHHHHHHHH----H----CSEEEEEEECCBHHH
T ss_pred ------------------------CcchhHHHHHHHHHHHHH----c----CCCeEEEeChHHhhh
Confidence 113799999998877642 2 899999999988764
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-14 Score=131.91 Aligned_cols=106 Identities=19% Similarity=0.210 Sum_probs=79.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHc-CCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 88 SVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~-Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
++|||||+|+||+++++.|.+. | .+|++++|+.++.... . ...+.++.+|++|++++.++++ ++|
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~~~g-~~V~~~~R~~~~~~~~----~--~~~v~~~~~D~~d~~~l~~~~~-------~~d 67 (289)
T 3e48_A 2 NIMLTGATGHLGTHITNQAIANHI-DHFHIGVRNVEKVPDD----W--RGKVSVRQLDYFNQESMVEAFK-------GMD 67 (289)
T ss_dssp CEEEETTTSHHHHHHHHHHHHTTC-TTEEEEESSGGGSCGG----G--BTTBEEEECCTTCHHHHHHHTT-------TCS
T ss_pred EEEEEcCCchHHHHHHHHHhhCCC-CcEEEEECCHHHHHHh----h--hCCCEEEEcCCCCHHHHHHHHh-------CCC
Confidence 5899999999999999999998 8 5899999987653221 1 2468899999999998887765 689
Q ss_pred EEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccC
Q 018819 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (350)
Q Consensus 167 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~ 228 (350)
+||||||.... . ..|+.++.++++++ .+.+ -++||++||..
T Consensus 68 ~vi~~a~~~~~--------~-------~~~~~~~~~l~~aa----~~~g--v~~iv~~Ss~~ 108 (289)
T 3e48_A 68 TVVFIPSIIHP--------S-------FKRIPEVENLVYAA----KQSG--VAHIIFIGYYA 108 (289)
T ss_dssp EEEECCCCCCS--------H-------HHHHHHHHHHHHHH----HHTT--CCEEEEEEESC
T ss_pred EEEEeCCCCcc--------c-------hhhHHHHHHHHHHH----HHcC--CCEEEEEcccC
Confidence 99999986421 1 12556665655554 3333 25999999954
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.7e-14 Score=132.18 Aligned_cols=150 Identities=13% Similarity=0.084 Sum_probs=105.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEcc-CCCHHHHHHHHHHHHHcCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD-LASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~D-vs~~~~v~~~~~~~~~~~g 163 (350)
.+++++||||+|+||+++++.|+++| ++|++++|+...... +.+.. ...+.++.+| ++|++++.++++
T Consensus 4 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~--~~l~~-~~~v~~v~~D~l~d~~~l~~~~~------- 72 (352)
T 1xgk_A 4 QKKTIAVVGATGRQGASLIRVAAAVG-HHVRAQVHSLKGLIA--EELQA-IPNVTLFQGPLLNNVPLMDTLFE------- 72 (352)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTT-CCEEEEESCSCSHHH--HHHHT-STTEEEEESCCTTCHHHHHHHHT-------
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEECCCChhhH--HHHhh-cCCcEEEECCccCCHHHHHHHHh-------
Confidence 45789999999999999999999999 589999998654321 12221 1257889999 999999888765
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCC-CCCCCCCCCCCCC
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG-NTNTLAGNVPPKA 242 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~-~~~~~~~~~~~~~ 242 (350)
.+|++|||++... .+.|..+ .++++++... +. -++||++||... ..+
T Consensus 73 ~~d~Vi~~a~~~~----------------~~~~~~~-~~l~~aa~~~----g~-v~~~V~~SS~~~~~~~---------- 120 (352)
T 1xgk_A 73 GAHLAFINTTSQA----------------GDEIAIG-KDLADAAKRA----GT-IQHYIYSSMPDHSLYG---------- 120 (352)
T ss_dssp TCSEEEECCCSTT----------------SCHHHHH-HHHHHHHHHH----SC-CSEEEEEECCCGGGTS----------
T ss_pred cCCEEEEcCCCCC----------------cHHHHHH-HHHHHHHHHc----CC-ccEEEEeCCccccccC----------
Confidence 5899999987531 0225554 5555555432 10 149999999862 211
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccC
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIAT 310 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t 310 (350)
......|+.+|++.+.+++. + |+++++|+||++.+
T Consensus 121 -------------------------~~~~~~y~~sK~~~E~~~~~----~----gi~~~ivrpg~~g~ 155 (352)
T 1xgk_A 121 -------------------------PWPAVPMWAPKFTVENYVRQ----L----GLPSTFVYAGIYNN 155 (352)
T ss_dssp -------------------------SCCCCTTTHHHHHHHHHHHT----S----SSCEEEEEECEEGG
T ss_pred -------------------------CCCCccHHHHHHHHHHHHHH----c----CCCEEEEecceecC
Confidence 01235799999998877653 2 89999999998743
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.55 E-value=5.3e-14 Score=127.81 Aligned_cols=156 Identities=15% Similarity=0.099 Sum_probs=107.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
.++++||||+|+||+++++.|+++|.++|++++|+...... +.+.. ..+.++.+|++|++++.++++ .+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~--~~l~~--~~~~~~~~D~~d~~~l~~~~~-------~~ 73 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAA--KELRL--QGAEVVQGDQDDQVIMELALN-------GA 73 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHH--HHHHH--TTCEEEECCTTCHHHHHHHHT-------TC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHH--HHHHH--CCCEEEEecCCCHHHHHHHHh-------cC
Confidence 46899999999999999999999983389999998654321 11211 247889999999999888765 58
Q ss_pred cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcc
Q 018819 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (350)
|+||||++..... ..+.|+.++.++++++. +.+ .++||++|| .+..+..
T Consensus 74 d~vi~~a~~~~~~-------------~~~~~~~~~~~~~~aa~----~~g--v~~iv~~S~-~~~~~~~----------- 122 (299)
T 2wm3_A 74 YATFIVTNYWESC-------------SQEQEVKQGKLLADLAR----RLG--LHYVVYSGL-ENIKKLT----------- 122 (299)
T ss_dssp SEEEECCCHHHHT-------------CHHHHHHHHHHHHHHHH----HHT--CSEEEECCC-CCHHHHT-----------
T ss_pred CEEEEeCCCCccc-------------cchHHHHHHHHHHHHHH----HcC--CCEEEEEcC-ccccccC-----------
Confidence 9999999863210 12345556656655543 322 258999554 3332100
Q ss_pred ccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
+ ......|+.+|.+++.+.+. . |++++.|+||++.++.
T Consensus 123 ------------------~---~~~~~~y~~sK~~~e~~~~~----~----gi~~~ilrp~~~~~~~ 160 (299)
T 2wm3_A 123 ------------------A---GRLAAAHFDGKGEVEEYFRD----I----GVPMTSVRLPCYFENL 160 (299)
T ss_dssp ------------------T---TSCCCHHHHHHHHHHHHHHH----H----TCCEEEEECCEEGGGG
T ss_pred ------------------C---CcccCchhhHHHHHHHHHHH----C----CCCEEEEeecHHhhhc
Confidence 0 01235799999998877642 2 8999999999998864
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.8e-14 Score=128.72 Aligned_cols=153 Identities=12% Similarity=0.052 Sum_probs=105.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
+++||||+ |.||.++++.|.++| +.|++++|+......... ..+.++.+|++|.+ ..++|
T Consensus 6 ~~ilVtGa-G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~------~~~~~~~~D~~d~~------------~~~~d 65 (286)
T 3ius_A 6 GTLLSFGH-GYTARVLSRALAPQG-WRIIGTSRNPDQMEAIRA------SGAEPLLWPGEEPS------------LDGVT 65 (286)
T ss_dssp CEEEEETC-CHHHHHHHHHHGGGT-CEEEEEESCGGGHHHHHH------TTEEEEESSSSCCC------------CTTCC
T ss_pred CcEEEECC-cHHHHHHHHHHHHCC-CEEEEEEcChhhhhhHhh------CCCeEEEecccccc------------cCCCC
Confidence 58999998 999999999999999 599999998776554432 35889999999932 45799
Q ss_pred EEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccc
Q 018819 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (350)
Q Consensus 167 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (350)
+|||+|+..... .. . ..++.++ +.+...+..+||++||...+ +..
T Consensus 66 ~vi~~a~~~~~~------~~--~----------~~~l~~a----~~~~~~~~~~~v~~Ss~~vy-g~~------------ 110 (286)
T 3ius_A 66 HLLISTAPDSGG------DP--V----------LAALGDQ----IAARAAQFRWVGYLSTTAVY-GDH------------ 110 (286)
T ss_dssp EEEECCCCBTTB------CH--H----------HHHHHHH----HHHTGGGCSEEEEEEEGGGG-CCC------------
T ss_pred EEEECCCccccc------cH--H----------HHHHHHH----HHhhcCCceEEEEeecceec-CCC------------
Confidence 999999975321 11 0 1223333 33210012599999997543 210
Q ss_pred cccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
...+..+..+..+...|+.+|.+.+.+.+.+ .|+++++++||.+.++.
T Consensus 111 -----------~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~-------~~~~~~ilRp~~v~G~~ 158 (286)
T 3ius_A 111 -----------DGAWVDETTPLTPTAARGRWRVMAEQQWQAV-------PNLPLHVFRLAGIYGPG 158 (286)
T ss_dssp -----------TTCEECTTSCCCCCSHHHHHHHHHHHHHHHS-------TTCCEEEEEECEEEBTT
T ss_pred -----------CCCCcCCCCCCCCCCHHHHHHHHHHHHHHhh-------cCCCEEEEeccceECCC
Confidence 0112223334445678999999988877655 38999999999998875
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-14 Score=135.72 Aligned_cols=137 Identities=18% Similarity=0.143 Sum_probs=108.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
++|||||+|+||++++++|+++|...|+.++|+ +|.+++.++++ ++|+
T Consensus 2 ~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~-------------------------~d~~~l~~~~~-------~~d~ 49 (369)
T 3st7_A 2 NIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ-------------------------TKEEELESALL-------KADF 49 (369)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT-------------------------CCHHHHHHHHH-------HCSE
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC-------------------------CCHHHHHHHhc-------cCCE
Confidence 699999999999999999999993155554443 78888888876 4899
Q ss_pred EEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcccc
Q 018819 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (350)
Q Consensus 168 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (350)
|||+||.... ++++..+++|+.++.++++++.. .+. ..+||++||....
T Consensus 50 Vih~a~~~~~---------~~~~~~~~~n~~~~~~l~~a~~~----~~~-~~~~v~~Ss~~~~----------------- 98 (369)
T 3st7_A 50 IVHLAGVNRP---------EHDKEFSLGNVSYLDHVLDILTR----NTK-KPAILLSSSIQAT----------------- 98 (369)
T ss_dssp EEECCCSBCT---------TCSTTCSSSCCBHHHHHHHHHTT----CSS-CCEEEEEEEGGGG-----------------
T ss_pred EEECCcCCCC---------CCHHHHHHHHHHHHHHHHHHHHH----hCC-CCeEEEeCchhhc-----------------
Confidence 9999998643 12345688999999999988642 221 1389999998754
Q ss_pred ccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
+...|+.+|.+.+.+++.++++. |++++.+.|+.+.++..
T Consensus 99 ----------------------~~~~Y~~sK~~~E~~~~~~~~~~----g~~~~i~R~~~v~G~~~ 138 (369)
T 3st7_A 99 ----------------------QDNPYGESKLQGEQLLREYAEEY----GNTVYIYRWPNLFGKWC 138 (369)
T ss_dssp ----------------------SCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECEEECTTC
T ss_pred ----------------------CCCCchHHHHHHHHHHHHHHHHh----CCCEEEEECCceeCCCC
Confidence 14589999999999999988876 89999999999988743
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.7e-14 Score=131.55 Aligned_cols=173 Identities=12% Similarity=0.093 Sum_probs=114.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC----cEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 86 KGSVIITGASSGLGLATAKALAETGK----WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga----~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
++++|||||+|+||.+++++|+++|. +.|++++|+..... + ...++.++.+|++|.+++.++++.+
T Consensus 1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~-----~--~~~~~~~~~~Dl~d~~~~~~~~~~~--- 70 (364)
T 2v6g_A 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW-----H--EDNPINYVQCDISDPDDSQAKLSPL--- 70 (364)
T ss_dssp CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC-----C--CSSCCEEEECCTTSHHHHHHHHTTC---
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc-----c--ccCceEEEEeecCCHHHHHHHHhcC---
Confidence 35899999999999999999999992 38999998754321 1 2346889999999999888776532
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEE-------EEeccCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLI-------IVGSITGNTNTL 234 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV-------~vSS~~~~~~~~ 234 (350)
+++|+|||+||... ++++..+++|+.++.++++++.+.... -.++| ++||...+ +..
T Consensus 71 -~~~d~vih~a~~~~----------~~~~~~~~~n~~~~~~l~~a~~~~~~~----~~~~v~~~g~~i~~Ss~~vy-g~~ 134 (364)
T 2v6g_A 71 -TDVTHVFYVTWANR----------STEQENCEANSKMFRNVLDAVIPNCPN----LKHISLQTGRKHYMGPFESY-GKI 134 (364)
T ss_dssp -TTCCEEEECCCCCC----------SSHHHHHHHHHHHHHHHHHHHTTTCTT----CCEEEEECCTHHHHCCGGGT-TTS
T ss_pred -CCCCEEEECCCCCc----------chHHHHHHHhHHHHHHHHHHHHHhccc----cceEEeccCceEEEechhhc-ccc
Confidence 24999999999742 235678899999999999998654211 13676 67776433 210
Q ss_pred CCCCCCCCCccccccccccCCCCCCCcccCCCCC-CchhchhhhHHHHHHHHHHHHHhhcCCCC-cEEEEeeCCcccCCc
Q 018819 235 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDF-DGAKAYKDSKVCNMLTMQEFHRRFHEETG-IAFASLYPGCIATTG 312 (350)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~asKaa~~~~~~~la~e~~~~~g-i~v~~v~PG~v~t~~ 312 (350)
.. ...+..+..+. +....|.. .+.+++.++. ..| +++++++|+.|.++.
T Consensus 135 ~~---------------------~~~~~~E~~~~~~~~~~y~~----~E~~~~~~~~----~~~~~~~~ilRp~~v~G~~ 185 (364)
T 2v6g_A 135 ES---------------------HDPPYTEDLPRLKYMNFYYD----LEDIMLEEVE----KKEGLTWSVHRPGNIFGFS 185 (364)
T ss_dssp CC---------------------CCSSBCTTSCCCSSCCHHHH----HHHHHHHHHT----TSTTCEEEEEEESSEECCC
T ss_pred cc---------------------CCCCCCccccCCccchhhHH----HHHHHHHHhh----cCCCceEEEECCCceeCCC
Confidence 00 00111111111 12335622 2444444432 235 999999999999875
Q ss_pred c
Q 018819 313 L 313 (350)
Q Consensus 313 ~ 313 (350)
.
T Consensus 186 ~ 186 (364)
T 2v6g_A 186 P 186 (364)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.7e-13 Score=125.77 Aligned_cols=153 Identities=19% Similarity=0.178 Sum_probs=109.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh----hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF----LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~----~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
..+++|||||+|+||+++++.|+++| +.|+++.|+. ++.+. .+.+. ...+.++.+|++|.+++.+++++.
T Consensus 9 ~~~~IlVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~~~~~~~-~~~l~--~~~v~~~~~Dl~d~~~l~~~~~~~-- 82 (346)
T 3i6i_A 9 PKGRVLIAGATGFIGQFVATASLDAH-RPTYILARPGPRSPSKAKI-FKALE--DKGAIIVYGLINEQEAMEKILKEH-- 82 (346)
T ss_dssp --CCEEEECTTSHHHHHHHHHHHHTT-CCEEEEECSSCCCHHHHHH-HHHHH--HTTCEEEECCTTCHHHHHHHHHHT--
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCC-CCEEEEECCCCCChhHHHH-HHHHH--hCCcEEEEeecCCHHHHHHHHhhC--
Confidence 45689999999999999999999999 5899999975 23322 22222 236789999999999999888753
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
++|+|||+++.. |+.++.++++++...- . -.+||+ |..+..
T Consensus 83 ---~~d~Vi~~a~~~--------------------n~~~~~~l~~aa~~~g---~--v~~~v~--S~~g~~--------- 123 (346)
T 3i6i_A 83 ---EIDIVVSTVGGE--------------------SILDQIALVKAMKAVG---T--IKRFLP--SEFGHD--------- 123 (346)
T ss_dssp ---TCCEEEECCCGG--------------------GGGGHHHHHHHHHHHC---C--CSEEEC--SCCSSC---------
T ss_pred ---CCCEEEECCchh--------------------hHHHHHHHHHHHHHcC---C--ceEEee--cccCCC---------
Confidence 699999999862 7778888888876542 0 126664 322211
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCC
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~ 311 (350)
..+..+.++...|+.+|.+.+.+.+. .|++++.++||++.+.
T Consensus 124 ---------------------~~e~~~~~p~~~y~~sK~~~e~~l~~--------~g~~~tivrpg~~~g~ 165 (346)
T 3i6i_A 124 ---------------------VNRADPVEPGLNMYREKRRVRQLVEE--------SGIPFTYICCNSIASW 165 (346)
T ss_dssp ---------------------TTTCCCCTTHHHHHHHHHHHHHHHHH--------TTCCBEEEECCEESSC
T ss_pred ---------------------CCccCcCCCcchHHHHHHHHHHHHHH--------cCCCEEEEEecccccc
Confidence 00112234567899999997766542 3899999999998764
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.7e-13 Score=120.81 Aligned_cols=151 Identities=13% Similarity=0.158 Sum_probs=101.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh-------hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHH
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-------LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 158 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~-------~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~ 158 (350)
+++++||||+|+||+++++.|+++| ++|+++.|+. ++.+.+ +.+.. ..+.++.+|++|++++.++++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~~~~~~~~-~~l~~--~~v~~v~~D~~d~~~l~~~~~-- 75 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAG-NPTYALVRKTITAANPETKEELI-DNYQS--LGVILLEGDINDHETLVKAIK-- 75 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHT-CCEEEEECCSCCSSCHHHHHHHH-HHHHH--TTCEEEECCTTCHHHHHHHHT--
T ss_pred CcEEEEECCCchHHHHHHHHHHhCC-CcEEEEECCCcccCChHHHHHHH-HHHHh--CCCEEEEeCCCCHHHHHHHHh--
Confidence 3579999999999999999999999 5888899976 443332 22322 247889999999998887775
Q ss_pred HHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCC
Q 018819 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (350)
Q Consensus 159 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (350)
++|+||||+|... +.+..++++++... +. -++|| .|..+....
T Consensus 76 -----~~d~vi~~a~~~~--------------------~~~~~~l~~aa~~~----g~-v~~~v--~S~~g~~~~----- 118 (307)
T 2gas_A 76 -----QVDIVICAAGRLL--------------------IEDQVKIIKAIKEA----GN-VKKFF--PSEFGLDVD----- 118 (307)
T ss_dssp -----TCSEEEECSSSSC--------------------GGGHHHHHHHHHHH----CC-CSEEE--CSCCSSCTT-----
T ss_pred -----CCCEEEECCcccc--------------------cccHHHHHHHHHhc----CC-ceEEe--ecccccCcc-----
Confidence 5999999998631 23445555554322 10 13776 343332100
Q ss_pred CCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
. .....+....| .+|.+++.+.+ +. |++++.++||++.+..
T Consensus 119 --------------------~----~~~~~p~~~~y-~sK~~~e~~~~----~~----~i~~~~lrp~~~~~~~ 159 (307)
T 2gas_A 119 --------------------R----HDAVEPVRQVF-EEKASIRRVIE----AE----GVPYTYLCCHAFTGYF 159 (307)
T ss_dssp --------------------S----CCCCTTHHHHH-HHHHHHHHHHH----HH----TCCBEEEECCEETTTT
T ss_pred --------------------c----ccCCCcchhHH-HHHHHHHHHHH----Hc----CCCeEEEEcceeeccc
Confidence 0 00112446789 99998776654 33 7899999999998753
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.5e-13 Score=131.94 Aligned_cols=165 Identities=16% Similarity=0.092 Sum_probs=112.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
++++|||||+|+||.++++.|+++| +.|++++|+.... ..+.+|+.+.. .+.+.++
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G-~~V~~l~R~~~~~--------------~~v~~d~~~~~---------~~~l~~~ 202 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGG-HEVIQLVRKEPKP--------------GKRFWDPLNPA---------SDLLDGA 202 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESSSCCT--------------TCEECCTTSCC---------TTTTTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCCCc--------------cceeecccchh---------HHhcCCC
Confidence 5689999999999999999999999 5999999985431 12567876421 2233579
Q ss_pred cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcc
Q 018819 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (350)
|+|||+||.... . ..+.+.++..+++|+.++.++++++.. +.+ .++||++||...+....
T Consensus 203 D~Vih~A~~~~~-~---~~~~~~~~~~~~~Nv~gt~~ll~a~a~---~~~--~~r~V~~SS~~vyg~~~----------- 262 (516)
T 3oh8_A 203 DVLVHLAGEPIF-G---RFNDSHKEAIRESRVLPTKFLAELVAE---STQ--CTTMISASAVGFYGHDR----------- 262 (516)
T ss_dssp SEEEECCCC---------CCGGGHHHHHHHTHHHHHHHHHHHHH---CSS--CCEEEEEEEGGGGCSEE-----------
T ss_pred CEEEECCCCccc-c---ccchhHHHHHHHHHHHHHHHHHHHHHh---cCC--CCEEEEeCcceEecCCC-----------
Confidence 999999997532 1 345667888999999999999997432 222 35899999976442000
Q ss_pred ccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
...++.+..+. +...|+.+|...+.+.+.. ...|++++.+.||.|.++.
T Consensus 263 ------------~~~~~~E~~~~-~~~~y~~~~~~~E~~~~~~-----~~~gi~~~ilRp~~v~Gp~ 311 (516)
T 3oh8_A 263 ------------GDEILTEESES-GDDFLAEVCRDWEHATAPA-----SDAGKRVAFIRTGVALSGR 311 (516)
T ss_dssp ------------EEEEECTTSCC-CSSHHHHHHHHHHHTTHHH-----HHTTCEEEEEEECEEEBTT
T ss_pred ------------CCCccCCCCCC-CcChHHHHHHHHHHHHHHH-----HhCCCCEEEEEeeEEECCC
Confidence 00011122222 4556888887765544322 2349999999999999875
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.7e-12 Score=117.64 Aligned_cols=150 Identities=10% Similarity=0.102 Sum_probs=98.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh-----hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDF-----LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~-----~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
++++||||+|+||.++++.|+++| ++|++++|+. ....+..+.+.. ..+.++.+|++|++++.++++
T Consensus 5 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~~~~~~l~~~~~--~~v~~v~~D~~d~~~l~~a~~----- 76 (321)
T 3c1o_A 5 EKIIIYGGTGYIGKFMVRASLSFS-HPTFIYARPLTPDSTPSSVQLREEFRS--MGVTIIEGEMEEHEKMVSVLK----- 76 (321)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTT-CCEEEEECCCCTTCCHHHHHHHHHHHH--TTCEEEECCTTCHHHHHHHHT-----
T ss_pred cEEEEEcCCchhHHHHHHHHHhCC-CcEEEEECCcccccChHHHHHHHHhhc--CCcEEEEecCCCHHHHHHHHc-----
Confidence 479999999999999999999999 5899999975 122222222222 357889999999999888776
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
.+|+||||++... +.++.++++++... +. -++|| .|..+....
T Consensus 77 --~~d~vi~~a~~~~--------------------~~~~~~l~~aa~~~----g~-v~~~v--~S~~g~~~~-------- 119 (321)
T 3c1o_A 77 --QVDIVISALPFPM--------------------ISSQIHIINAIKAA----GN-IKRFL--PSDFGCEED-------- 119 (321)
T ss_dssp --TCSEEEECCCGGG--------------------SGGGHHHHHHHHHH----CC-CCEEE--CSCCSSCGG--------
T ss_pred --CCCEEEECCCccc--------------------hhhHHHHHHHHHHh----CC-ccEEe--ccccccCcc--------
Confidence 5899999998631 33344555554332 10 13776 343332100
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCC
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~ 311 (350)
. .....+....| .+|.+++.+.+ +. |++++.|+||++.+.
T Consensus 120 ----~-----------------~~~~~p~~~~y-~sK~~~e~~~~----~~----~~~~~~lrp~~~~~~ 159 (321)
T 3c1o_A 120 ----R-----------------IKPLPPFESVL-EKKRIIRRAIE----AA----ALPYTYVSANCFGAY 159 (321)
T ss_dssp ----G-----------------CCCCHHHHHHH-HHHHHHHHHHH----HH----TCCBEEEECCEEHHH
T ss_pred ----c-----------------cccCCCcchHH-HHHHHHHHHHH----Hc----CCCeEEEEeceeccc
Confidence 0 00011235689 99999877664 33 788889999988653
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.39 E-value=4.3e-12 Score=115.73 Aligned_cols=154 Identities=16% Similarity=0.136 Sum_probs=103.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh-----hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-----LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~-----~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
.++++||||+|+||+++++.|+++| ++|+++.|+. ++.+.+ +.+. ...+.++.+|++|++++.++++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~~~~~~-~~~~--~~~~~~~~~D~~d~~~l~~~~~---- 75 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLG-HPTYVLFRPEVVSNIDKVQML-LYFK--QLGAKLIEASLDDHQRLVDALK---- 75 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCSCCSSCHHHHHHH-HHHH--TTTCEEECCCSSCHHHHHHHHT----
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCC-CcEEEEECCCcccchhHHHHH-HHHH--hCCeEEEeCCCCCHHHHHHHHh----
Confidence 3579999999999999999999999 5899999973 232222 2232 2357889999999999888765
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
++|+|||+++..... .|+.++.++++++.. .+. -++||+ |..+.... .
T Consensus 76 ---~~d~vi~~a~~~~~~----------------~~~~~~~~l~~aa~~----~g~-v~~~v~--S~~g~~~~---~--- 123 (313)
T 1qyd_A 76 ---QVDVVISALAGGVLS----------------HHILEQLKLVEAIKE----AGN-IKRFLP--SEFGMDPD---I--- 123 (313)
T ss_dssp ---TCSEEEECCCCSSSS----------------TTTTTHHHHHHHHHH----SCC-CSEEEC--SCCSSCTT---S---
T ss_pred ---CCCEEEECCccccch----------------hhHHHHHHHHHHHHh----cCC-CceEEe--cCCcCCcc---c---
Confidence 599999999975321 256666666666543 210 137774 43332100 0
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccC
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIAT 310 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t 310 (350)
. .....+....| .+|.+.+.+.+ + .|++++.++||++.+
T Consensus 124 ---------------------~-~~~~~p~~~~y-~sK~~~e~~~~----~----~g~~~~ilrp~~~~~ 162 (313)
T 1qyd_A 124 ---------------------M-EHALQPGSITF-IDKRKVRRAIE----A----ASIPYTYVSSNMFAG 162 (313)
T ss_dssp ---------------------C-CCCCSSTTHHH-HHHHHHHHHHH----H----TTCCBCEEECCEEHH
T ss_pred ---------------------c-ccCCCCCcchH-HHHHHHHHHHH----h----cCCCeEEEEeceecc
Confidence 0 00012345678 99998776653 3 378999999998865
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-11 Score=111.88 Aligned_cols=150 Identities=17% Similarity=0.209 Sum_probs=98.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChh-----HHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL-----KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~-----~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
.++++||||+|+||.++++.|+++| ++|+++.|+.. ...+..+.+. ...+.++.+|++|++++.++++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~~~~~~~~~~~~l~--~~~v~~v~~D~~d~~~l~~~~~---- 76 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLG-HPTFLLVRESTASSNSEKAQLLESFK--ASGANIVHGSIDDHASLVEAVK---- 76 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCCCCTTTTHHHHHHHHHHH--TTTCEEECCCTTCHHHHHHHHH----
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCC-CCEEEEECCcccccCHHHHHHHHHHH--hCCCEEEEeccCCHHHHHHHHc----
Confidence 3579999999999999999999999 58999998732 1111122232 2357889999999999888776
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
++|+|||+++... +.+..++++++... +. -++||+ |..+....
T Consensus 77 ---~~d~vi~~a~~~~--------------------~~~~~~l~~aa~~~----g~-v~~~v~--S~~g~~~~------- 119 (308)
T 1qyc_A 77 ---NVDVVISTVGSLQ--------------------IESQVNIIKAIKEV----GT-VKRFFP--SEFGNDVD------- 119 (308)
T ss_dssp ---TCSEEEECCCGGG--------------------SGGGHHHHHHHHHH----CC-CSEEEC--SCCSSCTT-------
T ss_pred ---CCCEEEECCcchh--------------------hhhHHHHHHHHHhc----CC-CceEee--cccccCcc-------
Confidence 5899999998631 22334555554332 10 137763 33321100
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccC
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIAT 310 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t 310 (350)
. .....+....| .+|.+++.+.+ +. |++++.++||++.+
T Consensus 120 ------------------~----~~~~~p~~~~y-~sK~~~e~~~~----~~----~~~~~~~r~~~~~~ 158 (308)
T 1qyc_A 120 ------------------N----VHAVEPAKSVF-EVKAKVRRAIE----AE----GIPYTYVSSNCFAG 158 (308)
T ss_dssp ------------------S----CCCCTTHHHHH-HHHHHHHHHHH----HH----TCCBEEEECCEEHH
T ss_pred ------------------c----cccCCcchhHH-HHHHHHHHHHH----hc----CCCeEEEEeceecc
Confidence 0 00012345688 99998776654 22 78889999998865
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=4.5e-12 Score=116.05 Aligned_cols=79 Identities=14% Similarity=0.148 Sum_probs=61.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
++++||||+|+||.++++.|+++| ++|+++.|+.....+..+.+.. ..+.++.+|++|++++.++++ .+|
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~~~~~~~l~~--~~v~~v~~Dl~d~~~l~~a~~-------~~d 81 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLG-HPTYVFTRPNSSKTTLLDEFQS--LGAIIVKGELDEHEKLVELMK-------KVD 81 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTT-CCEEEEECTTCSCHHHHHHHHH--TTCEEEECCTTCHHHHHHHHT-------TCS
T ss_pred CeEEEECCCchHHHHHHHHHHHCC-CcEEEEECCCCchhhHHHHhhc--CCCEEEEecCCCHHHHHHHHc-------CCC
Confidence 479999999999999999999999 5899999976421122222222 247889999999999888775 599
Q ss_pred EEEEccccC
Q 018819 167 VLVCNAAVY 175 (350)
Q Consensus 167 ~lv~~Ag~~ 175 (350)
+|||+++..
T Consensus 82 ~vi~~a~~~ 90 (318)
T 2r6j_A 82 VVISALAFP 90 (318)
T ss_dssp EEEECCCGG
T ss_pred EEEECCchh
Confidence 999999863
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-13 Score=123.98 Aligned_cols=110 Identities=16% Similarity=0.218 Sum_probs=81.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|++|||||+||||+++++.|+++|+ +|++++|+.++.+++.+++... ..+.++.+|++|+++++++++
T Consensus 116 ~l~gk~vlVtGaaGGiG~aia~~L~~~G~-~V~i~~R~~~~~~~l~~~~~~~-~~~~~~~~D~~~~~~~~~~~~------ 187 (287)
T 1lu9_A 116 SVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKR-FKVNVTAAETADDASRAEAVK------ 187 (287)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHH-HTCCCEEEECCSHHHHHHHTT------
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCHHHHHHHHHHHHhc-CCcEEEEecCCCHHHHHHHHH------
Confidence 46889999999999999999999999996 7999999988877777666432 135678899999998877655
Q ss_pred CCCcEEEEccccCCCCCCCCCCCH-HHHHHHHhhhhHHHH
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTA-EGFELSVGTNHLGHF 201 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~-~~~~~~~~~n~~g~~ 201 (350)
.+|+||||+|+.....++.+.+. +.|+.++++|+.+++
T Consensus 188 -~~DvlVn~ag~g~~~~~~~~~~~~~~~~~~~dvn~~~~~ 226 (287)
T 1lu9_A 188 -GAHFVFTAGAIGLELLPQAAWQNESSIEIVADYNAQPPL 226 (287)
T ss_dssp -TCSEEEECCCTTCCSBCHHHHTTCTTCCEEEECCCSSSC
T ss_pred -hCCEEEECCCccccCCChhHcCchHHHHHHHHhhhhhhH
Confidence 48999999986422111112222 344456677776655
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=5.3e-10 Score=101.23 Aligned_cols=163 Identities=11% Similarity=0.066 Sum_probs=103.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
.||||||+|.||.+++++|.++| +.|+++.|+... .+ +..| .+ ..+....+|.
T Consensus 2 kILVTGatGfIG~~L~~~L~~~G-~~V~~l~R~~~~------------~~---~~~~-----~~------~~~~l~~~d~ 54 (298)
T 4b4o_A 2 RVLVGGGTGFIGTALTQLLNARG-HEVTLVSRKPGP------------GR---ITWD-----EL------AASGLPSCDA 54 (298)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCT------------TE---EEHH-----HH------HHHCCCSCSE
T ss_pred EEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCCc------------Ce---eecc-----hh------hHhhccCCCE
Confidence 59999999999999999999999 699999987421 11 1112 11 1233467999
Q ss_pred EEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcccc
Q 018819 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (350)
Q Consensus 168 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (350)
+||.||.... ......+.+..+..++.|+.++.++.+++...-.+ ...+|+.||...+...
T Consensus 55 vihla~~~i~-~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~----~~~~i~~Ss~~vyg~~-------------- 115 (298)
T 4b4o_A 55 AVNLAGENIL-NPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQP----PKAWVLVTGVAYYQPS-------------- 115 (298)
T ss_dssp EEECCCCCSS-CTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSC----CSEEEEEEEGGGSCCC--------------
T ss_pred EEEeccCccc-chhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCC----ceEEEEEeeeeeecCC--------------
Confidence 9999986322 23334567777888999999998888776432211 2357777776544211
Q ss_pred ccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
......+..+......|+..|...+. ..+....++++..+.||.|..|.
T Consensus 116 ----------~~~~~~E~~p~~~~~~~~~~~~~~e~------~~~~~~~~~~~~~~r~~~v~g~~ 164 (298)
T 4b4o_A 116 ----------LTAEYDEDSPGGDFDFFSNLVTKWEA------AARLPGDSTRQVVVRSGVVLGRG 164 (298)
T ss_dssp ----------SSCCBCTTCCCSCSSHHHHHHHHHHH------HHCCSSSSSEEEEEEECEEECTT
T ss_pred ----------CCCcccccCCccccchhHHHHHHHHH------HHHhhccCCceeeeeeeeEEcCC
Confidence 01112222333444455555443222 12225679999999999998874
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.6e-10 Score=104.97 Aligned_cols=173 Identities=10% Similarity=0.051 Sum_probs=108.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC------cEEEEEecCh--hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHH
Q 018819 88 SVIITGASSGLGLATAKALAETGK------WHIIMACRDF--LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga------~~Vi~~~r~~--~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
.++||||+|.||.+++..|+++|. ..|+++++.. +..+.....+.... +.++ .|+.+.+++.+.+
T Consensus 6 kVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~--~~~~-~di~~~~~~~~a~---- 78 (327)
T 1y7t_A 6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA--FPLL-AGLEATDDPKVAF---- 78 (327)
T ss_dssp EEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTT--CTTE-EEEEEESCHHHHT----
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhccc--cccc-CCeEeccChHHHh----
Confidence 699999999999999999999884 2788888864 22222222332211 1122 4665544444333
Q ss_pred HcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCC
Q 018819 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (350)
...|+|||.||.... + ..+ ....+++|+.++.++.+++..+- . . ..+++++|+.......
T Consensus 79 ---~~~D~Vih~Ag~~~~--~--~~~---~~~~~~~Nv~~t~~l~~a~~~~~-~-~--~~~vvv~snp~~~~~~------ 138 (327)
T 1y7t_A 79 ---KDADYALLVGAAPRK--A--GME---RRDLLQVNGKIFTEQGRALAEVA-K-K--DVKVLVVGNPANTNAL------ 138 (327)
T ss_dssp ---TTCSEEEECCCCCCC--T--TCC---HHHHHHHHHHHHHHHHHHHHHHS-C-T--TCEEEECSSSHHHHHH------
T ss_pred ---CCCCEEEECCCcCCC--C--CCC---HHHHHHHHHHHHHHHHHHHHhhc-C-C--CeEEEEeCCchhhhHH------
Confidence 268999999998532 1 123 34578999999999999887642 0 1 2478877764321100
Q ss_pred CCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCC
Q 018819 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (350)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~ 311 (350)
... ....++++...|+.+|...+.+.+.++.++ |+++..|+|..|..+
T Consensus 139 ----------~~~----------~~~~~~~p~~~yg~tkl~~er~~~~~a~~~----g~~~~~vr~~~V~G~ 186 (327)
T 1y7t_A 139 ----------IAY----------KNAPGLNPRNFTAMTRLDHNRAKAQLAKKT----GTGVDRIRRMTVWGN 186 (327)
T ss_dssp ----------HHH----------HTCTTSCGGGEEECCHHHHHHHHHHHHHHH----TCCGGGEECCEEEBC
T ss_pred ----------HHH----------HHcCCCChhheeccchHHHHHHHHHHHHHh----CcChhheeeeEEEcC
Confidence 000 000013455679999998888888888776 666666776665554
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.4e-09 Score=92.31 Aligned_cols=79 Identities=19% Similarity=0.209 Sum_probs=59.7
Q ss_pred ccCCCEEEEEcC----------------CCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCC
Q 018819 83 TLRKGSVIITGA----------------SSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA 146 (350)
Q Consensus 83 ~l~~~~~lItGg----------------s~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs 146 (350)
++.||++||||| +||||+++|+.|+++|| .|++++++.. + ... ..+ -.+|++
T Consensus 5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga-~V~l~~~~~~-l-------~~~-~g~--~~~dv~ 72 (226)
T 1u7z_A 5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGA-NVTLVSGPVS-L-------PTP-PFV--KRVDVM 72 (226)
T ss_dssp TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTC-EEEEEECSCC-C-------CCC-TTE--EEEECC
T ss_pred CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCC-EEEEEECCcc-c-------ccC-CCC--eEEccC
Confidence 468999999999 69999999999999997 8888877541 1 111 112 357888
Q ss_pred CHHHHHHHHHHHHHcCCCCcEEEEccccCC
Q 018819 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYL 176 (350)
Q Consensus 147 ~~~~v~~~~~~~~~~~g~id~lv~~Ag~~~ 176 (350)
+.++ +++.+.+.++++|++|||||+..
T Consensus 73 ~~~~---~~~~v~~~~~~~Dili~~Aav~d 99 (226)
T 1u7z_A 73 TALE---MEAAVNASVQQQNIFIGCAAVAD 99 (226)
T ss_dssp SHHH---HHHHHHHHGGGCSEEEECCBCCS
T ss_pred cHHH---HHHHHHHhcCCCCEEEECCcccC
Confidence 8554 55666677889999999999853
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.77 E-value=4.5e-08 Score=75.36 Aligned_cols=75 Identities=13% Similarity=0.234 Sum_probs=61.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
+++++|+|+ |++|..+++.|.++|.+.|++++|+.++.+... ...+.++.+|+++.+++.++++ .+
T Consensus 5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~~~-------~~ 70 (118)
T 3ic5_A 5 RWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN------RMGVATKQVDAKDEAGLAKALG-------GF 70 (118)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH------TTTCEEEECCTTCHHHHHHHTT-------TC
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH------hCCCcEEEecCCCHHHHHHHHc-------CC
Confidence 458999999 999999999999999558999999987766543 1246778899999988777653 69
Q ss_pred cEEEEcccc
Q 018819 166 DVLVCNAAV 174 (350)
Q Consensus 166 d~lv~~Ag~ 174 (350)
|++|++++.
T Consensus 71 d~vi~~~~~ 79 (118)
T 3ic5_A 71 DAVISAAPF 79 (118)
T ss_dssp SEEEECSCG
T ss_pred CEEEECCCc
Confidence 999999863
|
| >3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=7.8e-09 Score=84.63 Aligned_cols=78 Identities=18% Similarity=0.198 Sum_probs=62.2
Q ss_pred CchHHHHHHHHHHcCCcEEEEEecChhHHH---HHHHHhccCCCceEEEEccCCCH--HHHHHHHHHHHHcCCCCcEEEE
Q 018819 96 SGLGLATAKALAETGKWHIIMACRDFLKAE---RAAKSAGMAKENYTIMHLDLASL--DSVRQFVDTFRRSGRPLDVLVC 170 (350)
Q Consensus 96 ~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~---~~~~~l~~~~~~v~~~~~Dvs~~--~~v~~~~~~~~~~~g~id~lv~ 170 (350)
+-++.++++.|++.|+ +|++..|+..... +..+.++..|.++..+++|++++ ++++++++.+.+.+|+ |+|||
T Consensus 26 ~~p~~a~a~~La~~Ga-~vvi~~r~~~e~~~~~~~~~~~~~~G~~~~~i~~Dv~~~~~~~v~~~~~~i~~~~G~-dVLVn 103 (157)
T 3gxh_A 26 GLPNEQQFSLLKQAGV-DVVINLMPDSSKDAHPDEGKLVTQAGMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGK-DVLVH 103 (157)
T ss_dssp BCCCHHHHHHHHHTTC-CEEEECSCTTSTTSCTTHHHHHHHTTCEEEECCCCTTSCCHHHHHHHHHHHHHTTTS-CEEEE
T ss_pred CCCCHHHHHHHHHcCC-CEEEECCCcccccccccHHHHHHHcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCC-CEEEE
Confidence 3578999999999997 7777777643321 12334445577888999999999 9999999999998898 99999
Q ss_pred ccccC
Q 018819 171 NAAVY 175 (350)
Q Consensus 171 ~Ag~~ 175 (350)
|||+.
T Consensus 104 nAgg~ 108 (157)
T 3gxh_A 104 CLANY 108 (157)
T ss_dssp CSBSH
T ss_pred CCCCC
Confidence 99974
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.66 E-value=4.6e-08 Score=84.49 Aligned_cols=92 Identities=12% Similarity=0.137 Sum_probs=61.4
Q ss_pred CCCEEEEEcC----------------CCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCH
Q 018819 85 RKGSVIITGA----------------SSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148 (350)
Q Consensus 85 ~~~~~lItGg----------------s~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~ 148 (350)
.||++||||| +|++|+++|+.|+++|| .|++++|.... .. .....+. ..|+.
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga-~V~lv~~~~~~-~~------~~~~~~~--~~~v~-- 69 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGY-EVCLITTKRAL-KP------EPHPNLS--IREIT-- 69 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTC-EEEEEECTTSC-CC------CCCTTEE--EEECC--
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCC-EEEEEeCCccc-cc------cCCCCeE--EEEHh--
Confidence 5789999999 78899999999999997 88888886421 00 0011232 33555
Q ss_pred HHHHHHHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHH
Q 018819 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFE 190 (350)
Q Consensus 149 ~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~ 190 (350)
+++++++.+.+.++++|++|+||++... .+....+.+++.
T Consensus 70 -s~~em~~~v~~~~~~~Dili~aAAvsD~-~p~~~~~~e~~~ 109 (232)
T 2gk4_A 70 -NTKDLLIEMQERVQDYQVLIHSMAVSDY-TPVYMTGLEEVQ 109 (232)
T ss_dssp -SHHHHHHHHHHHGGGCSEEEECSBCCSE-EEEEEEEHHHHH
T ss_pred -HHHHHHHHHHHhcCCCCEEEEcCccccc-cchhhcchhhhh
Confidence 4555666666667889999999998532 333333344433
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.1e-07 Score=87.99 Aligned_cols=83 Identities=23% Similarity=0.333 Sum_probs=70.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC--cEEEEEecChhHHHHHHHHhccC-CCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 87 GSVIITGASSGLGLATAKALAETGK--WHIIMACRDFLKAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga--~~Vi~~~r~~~~~~~~~~~l~~~-~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
+.++|+|+ ||||+++++.|+++|. ..|++.+|+.++.+++.+++... +.++..+.+|++|.++++++++..
T Consensus 2 ~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~----- 75 (405)
T 4ina_A 2 AKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEV----- 75 (405)
T ss_dssp CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHH-----
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhh-----
Confidence 37899999 8999999999999984 38999999999888887777532 246888999999999999998876
Q ss_pred CCcEEEEccccC
Q 018819 164 PLDVLVCNAAVY 175 (350)
Q Consensus 164 ~id~lv~~Ag~~ 175 (350)
++|+||||++..
T Consensus 76 ~~DvVin~ag~~ 87 (405)
T 4ina_A 76 KPQIVLNIALPY 87 (405)
T ss_dssp CCSEEEECSCGG
T ss_pred CCCEEEECCCcc
Confidence 699999999863
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=7.6e-08 Score=93.99 Aligned_cols=100 Identities=19% Similarity=0.248 Sum_probs=67.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|+++|||| ||+|+++++.|++.|+ +|++++|+.++.+++.+++. .++. ++.| +.++ ..
T Consensus 361 ~l~~k~vlV~Ga-GGig~aia~~L~~~G~-~V~i~~R~~~~a~~la~~~~---~~~~----~~~d---l~~~------~~ 422 (523)
T 2o7s_A 361 PLASKTVVVIGA-GGAGKALAYGAKEKGA-KVVIANRTYERALELAEAIG---GKAL----SLTD---LDNY------HP 422 (523)
T ss_dssp -----CEEEECC-SHHHHHHHHHHHHHCC--CEEEESSHHHHHHHHHHTT---C-CE----ETTT---TTTC--------
T ss_pred ccCCCEEEEECC-cHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcC---Ccee----eHHH---hhhc------cc
Confidence 467889999999 5999999999999997 89999999888888777663 2222 2222 1100 11
Q ss_pred CCCcEEEEccccCCC----CCCCCCCCHHHHHHHHhhhhHHH
Q 018819 163 RPLDVLVCNAAVYLP----TAKEPTFTAEGFELSVGTNHLGH 200 (350)
Q Consensus 163 g~id~lv~~Ag~~~~----~~~~~~~~~~~~~~~~~~n~~g~ 200 (350)
+.+|++|||+|+... ..++.+.+.+.|..++++|+.+.
T Consensus 423 ~~~DilVN~agvg~~~~~~~~~~~~~~~~~~~~v~Dvny~p~ 464 (523)
T 2o7s_A 423 EDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPR 464 (523)
T ss_dssp CCSEEEEECSSTTCTTCTTCCSSCTTTGGGEEEEEECCCSSS
T ss_pred cCceEEEECCCCCCCCCCCCCCCChHHcCcCcEEEEEeeCCc
Confidence 358999999997432 13455667778888999998765
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.1e-09 Score=104.26 Aligned_cols=127 Identities=19% Similarity=0.245 Sum_probs=74.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhc------c--CCCceEEEE---ccCCCHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG------M--AKENYTIMH---LDLASLDSV 151 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~------~--~~~~v~~~~---~Dvs~~~~v 151 (350)
.+.||+++|||++ +||+++|+.|+..|+ +|++++++.....+.....- . ...++.+.. .|+-+.+.
T Consensus 262 ~L~GKtVvVtGaG-gIG~aiA~~Laa~GA-~Viv~D~~~~~a~~Aa~~g~dv~~lee~~~~aDvVi~atG~~~vl~~e~- 338 (488)
T 3ond_A 262 MIAGKVAVVAGYG-DVGKGCAAALKQAGA-RVIVTEIDPICALQATMEGLQVLTLEDVVSEADIFVTTTGNKDIIMLDH- 338 (488)
T ss_dssp CCTTCEEEEECCS-HHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEECCGGGTTTTCSEEEECSSCSCSBCHHH-
T ss_pred cccCCEEEEECCC-HHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHhCCccCCHHHHHHhcCEEEeCCCChhhhhHHH-
Confidence 4789999999987 999999999999997 89999998766655443210 0 111222211 12222221
Q ss_pred HHHHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHH-------HhhhhHHHHHHH-HHHHHHHhcCCCCCCeEEE
Q 018819 152 RQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELS-------VGTNHLGHFLLS-RLLLDDLKQSDYPSKRLII 223 (350)
Q Consensus 152 ~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~-------~~~n~~g~~~l~-~~~~~~~~~~~~~~g~iV~ 223 (350)
+ +.. +.+.+|+|+|... .+++.+.++.. +..|+.+.+... +..++.+. .|+|||
T Consensus 339 ---l----~~m-k~gaiVvNaG~~~-----~Ei~~~~l~~~~~v~~~~i~~~v~~~~~~~fg~aI~lLa-----eGRIVN 400 (488)
T 3ond_A 339 ---M----KKM-KNNAIVCNIGHFD-----NEIDMLGLETHPGVKRITIKPQTDRWVFPETNTGIIILA-----EGRLMN 400 (488)
T ss_dssp ---H----TTS-CTTEEEEESSSTT-----TTBTHHHHHTSTTCEEEEEETTEEEEECTTTCCEEEEEG-----GGSCHH
T ss_pred ---H----Hhc-CCCeEEEEcCCCC-----cccchHHHHHhhhhheEEeeeeEEEEEecchHHHHHHHc-----CCcEEE
Confidence 1 112 4577888888641 24566666654 233333222111 12222222 379999
Q ss_pred EeccCCC
Q 018819 224 VGSITGN 230 (350)
Q Consensus 224 vSS~~~~ 230 (350)
+||+.|.
T Consensus 401 lsS~~G~ 407 (488)
T 3ond_A 401 LGCATGH 407 (488)
T ss_dssp HHHSCCS
T ss_pred EecCccc
Confidence 9998886
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.45 E-value=4.7e-07 Score=86.64 Aligned_cols=78 Identities=21% Similarity=0.295 Sum_probs=61.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
++++++|+| +|++|+++++.|++.|+ .|++++|+.++.+++.+.+ ..+..+.+|++|.+++.++++ .
T Consensus 2 ~~k~VlViG-aG~iG~~ia~~L~~~G~-~V~v~~R~~~~a~~la~~~----~~~~~~~~Dv~d~~~l~~~l~-------~ 68 (450)
T 1ff9_A 2 ATKSVLMLG-SGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLSAGV----QHSTPISLDVNDDAALDAEVA-------K 68 (450)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHTTTC-EEEEEESSHHHHHHTTTTC----TTEEEEECCTTCHHHHHHHHT-------T
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCcC-EEEEEECCHHHHHHHHHhc----CCceEEEeecCCHHHHHHHHc-------C
Confidence 467899997 79999999999999995 8999999976655443322 236788899999988877664 6
Q ss_pred CcEEEEccccC
Q 018819 165 LDVLVCNAAVY 175 (350)
Q Consensus 165 id~lv~~Ag~~ 175 (350)
+|+||||++..
T Consensus 69 ~DvVIn~a~~~ 79 (450)
T 1ff9_A 69 HDLVISLIPYT 79 (450)
T ss_dssp SSEEEECCC--
T ss_pred CcEEEECCccc
Confidence 99999999863
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=3.8e-07 Score=83.82 Aligned_cols=79 Identities=13% Similarity=0.144 Sum_probs=60.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.++++|||||+||||..+++.+...|+ +|++++++.++.+.+ +++ +.. ..+|.++.+++.+.+.++.. ++
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~-~~~---g~~---~~~d~~~~~~~~~~~~~~~~--~~ 214 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYL-KQI---GFD---AAFNYKTVNSLEEALKKASP--DG 214 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH-HHT---TCS---EEEETTSCSCHHHHHHHHCT--TC
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH-Hhc---CCc---EEEecCCHHHHHHHHHHHhC--CC
Confidence 588999999999999999999999997 899999987776655 444 222 23577774445555555433 57
Q ss_pred CcEEEEccc
Q 018819 165 LDVLVCNAA 173 (350)
Q Consensus 165 id~lv~~Ag 173 (350)
+|++|+|+|
T Consensus 215 ~d~vi~~~g 223 (333)
T 1v3u_A 215 YDCYFDNVG 223 (333)
T ss_dssp EEEEEESSC
T ss_pred CeEEEECCC
Confidence 999999998
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.44 E-value=3.9e-07 Score=85.04 Aligned_cols=108 Identities=19% Similarity=0.182 Sum_probs=73.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++++++|+|+ |+||+.+++.+...|+ +|++++|+.++.+.+.+.+ +.. +.+|+++.+++.+++.
T Consensus 163 ~l~~~~V~ViGa-G~iG~~~a~~l~~~Ga-~V~~~d~~~~~~~~~~~~~---g~~---~~~~~~~~~~l~~~~~------ 228 (369)
T 2eez_A 163 GVAPASVVILGG-GTVGTNAAKIALGMGA-QVTILDVNHKRLQYLDDVF---GGR---VITLTATEANIKKSVQ------ 228 (369)
T ss_dssp BBCCCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHT---TTS---EEEEECCHHHHHHHHH------
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhc---Cce---EEEecCCHHHHHHHHh------
Confidence 467899999999 9999999999999997 8999999987766654444 222 4567888887777654
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~ 229 (350)
..|++|+|++......+ ..+.+..++.|++ ++.||++++..+
T Consensus 229 -~~DvVi~~~g~~~~~~~--------------------~li~~~~l~~mk~----gg~iV~v~~~~g 270 (369)
T 2eez_A 229 -HADLLIGAVLVPGAKAP--------------------KLVTRDMLSLMKE----GAVIVDVAVDQG 270 (369)
T ss_dssp -HCSEEEECCC---------------------------CCSCHHHHTTSCT----TCEEEECC----
T ss_pred -CCCEEEECCCCCccccc--------------------hhHHHHHHHhhcC----CCEEEEEecCCC
Confidence 58999999986421010 1223444555543 479999998654
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=4.9e-07 Score=76.54 Aligned_cols=79 Identities=23% Similarity=0.261 Sum_probs=56.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
++++++||||+||||.++++.+...|+ +|++++|+.++.+.+ ++ .+... .+|.++.+..+.+.+... .++
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~-~~---~g~~~---~~d~~~~~~~~~~~~~~~--~~~ 107 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREML-SR---LGVEY---VGDSRSVDFADEILELTD--GYG 107 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHH-HT---TCCSE---EEETTCSTHHHHHHHHTT--TCC
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH-HH---cCCCE---EeeCCcHHHHHHHHHHhC--CCC
Confidence 567999999999999999999999996 899999987665443 22 23322 257777554444433321 236
Q ss_pred CcEEEEccc
Q 018819 165 LDVLVCNAA 173 (350)
Q Consensus 165 id~lv~~Ag 173 (350)
+|++|+|+|
T Consensus 108 ~D~vi~~~g 116 (198)
T 1pqw_A 108 VDVVLNSLA 116 (198)
T ss_dssp EEEEEECCC
T ss_pred CeEEEECCc
Confidence 999999987
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=98.36 E-value=1.2e-07 Score=85.36 Aligned_cols=81 Identities=23% Similarity=0.279 Sum_probs=59.5
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++++++|||++ |+|+++++.|++.| +|++++|+.++.+++.+++...+.....+.+|+++. .+.+
T Consensus 125 ~l~~k~vlV~GaG-giG~aia~~L~~~G--~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~----------~~~~ 191 (287)
T 1nvt_A 125 RVKDKNIVIYGAG-GAARAVAFELAKDN--NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGL----------DVDL 191 (287)
T ss_dssp CCCSCEEEEECCS-HHHHHHHHHHTSSS--EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECT----------TCCC
T ss_pred CcCCCEEEEECch-HHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeH----------HHhh
Confidence 4678999999997 99999999999999 899999998887777766542110000123455541 3456
Q ss_pred CCCcEEEEccccCC
Q 018819 163 RPLDVLVCNAAVYL 176 (350)
Q Consensus 163 g~id~lv~~Ag~~~ 176 (350)
+++|+||||+|...
T Consensus 192 ~~~DilVn~ag~~~ 205 (287)
T 1nvt_A 192 DGVDIIINATPIGM 205 (287)
T ss_dssp TTCCEEEECSCTTC
T ss_pred CCCCEEEECCCCCC
Confidence 78999999999753
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=3.5e-06 Score=76.48 Aligned_cols=83 Identities=17% Similarity=0.219 Sum_probs=63.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC---hhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD---FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~---~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
.+++|+++|+|+ ||+|++++..|++.|+.+|++++|+ .++.+++.+++.... .+.+..+++.+.+++.+.+.
T Consensus 151 ~l~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~-~~~~~~~~~~~~~~l~~~l~--- 225 (315)
T 3tnl_A 151 DIIGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKT-DCKAQLFDIEDHEQLRKEIA--- 225 (315)
T ss_dssp CCTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHS-SCEEEEEETTCHHHHHHHHH---
T ss_pred CccCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhc-CCceEEeccchHHHHHhhhc---
Confidence 568999999997 7999999999999998789999999 788888777765321 12334456777666555443
Q ss_pred HcCCCCcEEEEcccc
Q 018819 160 RSGRPLDVLVCNAAV 174 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~ 174 (350)
..|+|||+...
T Consensus 226 ----~aDiIINaTp~ 236 (315)
T 3tnl_A 226 ----ESVIFTNATGV 236 (315)
T ss_dssp ----TCSEEEECSST
T ss_pred ----CCCEEEECccC
Confidence 58999998765
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.26 E-value=3.3e-06 Score=80.98 Aligned_cols=80 Identities=18% Similarity=0.269 Sum_probs=62.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++++++|+|+ ||+|+++++.|++.|..+|++++|+.++.+++.+. . .+..+.+|++|.+++.++++
T Consensus 20 ~l~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~---~--~~~~~~~D~~d~~~l~~~l~------ 87 (467)
T 2axq_A 20 RHMGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANAQALAKP---S--GSKAISLDVTDDSALDKVLA------ 87 (467)
T ss_dssp ---CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGG---G--TCEEEECCTTCHHHHHHHHH------
T ss_pred CCCCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHh---c--CCcEEEEecCCHHHHHHHHc------
Confidence 456778999997 99999999999998335899999998777665543 1 35667899999988777664
Q ss_pred CCCcEEEEccccC
Q 018819 163 RPLDVLVCNAAVY 175 (350)
Q Consensus 163 g~id~lv~~Ag~~ 175 (350)
.+|+|||+++..
T Consensus 88 -~~DvVIn~tp~~ 99 (467)
T 2axq_A 88 -DNDVVISLIPYT 99 (467)
T ss_dssp -TSSEEEECSCGG
T ss_pred -CCCEEEECCchh
Confidence 689999999864
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.20 E-value=4.2e-06 Score=77.29 Aligned_cols=80 Identities=16% Similarity=0.101 Sum_probs=60.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.++++||+|++||||+.+++.+...|+ +|++++|+.++.+.+ +++ +.. ..+|+++.+++.+.+.++... +
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~-~~~---g~~---~~~d~~~~~~~~~~~~~~~~~--~ 238 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELF-RSI---GGE---VFIDFTKEKDIVGAVLKATDG--G 238 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHH-HHT---TCC---EEEETTTCSCHHHHHHHHHTS--C
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHH-HHc---CCc---eEEecCccHhHHHHHHHHhCC--C
Confidence 578999999999999999999999997 899999987766443 333 332 234877655666666665543 7
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|+|+|.
T Consensus 239 ~D~vi~~~g~ 248 (347)
T 2hcy_A 239 AHGVINVSVS 248 (347)
T ss_dssp EEEEEECSSC
T ss_pred CCEEEECCCc
Confidence 9999999984
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=98.14 E-value=6.1e-06 Score=73.52 Aligned_cols=76 Identities=16% Similarity=0.201 Sum_probs=57.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++++++|+|+ ||+|+++++.|++.| .+|++++|+.++.+++.+++...+ .+. .+|+ +++ .+
T Consensus 116 ~l~~k~vlViGa-Gg~g~a~a~~L~~~G-~~V~v~~R~~~~~~~la~~~~~~~-~~~--~~~~---~~~-------~~-- 178 (271)
T 1nyt_A 116 IRPGLRILLIGA-GGASRGVLLPLLSLD-CAVTITNRTVSRAEELAKLFAHTG-SIQ--ALSM---DEL-------EG-- 178 (271)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSSHHHHHHHHHHTGGGS-SEE--ECCS---GGG-------TT--
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHhhccC-Cee--EecH---HHh-------cc--
Confidence 467899999998 799999999999999 599999999988888877765322 221 2333 221 11
Q ss_pred CCCcEEEEccccC
Q 018819 163 RPLDVLVCNAAVY 175 (350)
Q Consensus 163 g~id~lv~~Ag~~ 175 (350)
+.+|+||||++..
T Consensus 179 ~~~DivVn~t~~~ 191 (271)
T 1nyt_A 179 HEFDLIINATSSG 191 (271)
T ss_dssp CCCSEEEECCSCG
T ss_pred CCCCEEEECCCCC
Confidence 5899999999975
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=3.1e-06 Score=78.01 Aligned_cols=81 Identities=10% Similarity=0.062 Sum_probs=59.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.++++||+|++||||..+++.+...|+ +|++++++.++.+.+.+++ |... .+|.++.+++.+.+.++.. ++
T Consensus 155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~~---g~~~---~~d~~~~~~~~~~~~~~~~--~~ 225 (345)
T 2j3h_A 155 EGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAGSKEKVDLLKTKF---GFDD---AFNYKEESDLTAALKRCFP--NG 225 (345)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTS---CCSE---EEETTSCSCSHHHHHHHCT--TC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHc---CCce---EEecCCHHHHHHHHHHHhC--CC
Confidence 588999999999999999999999997 8999999877766554334 3322 2476654444444444432 47
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|+|+|.
T Consensus 226 ~d~vi~~~g~ 235 (345)
T 2j3h_A 226 IDIYFENVGG 235 (345)
T ss_dssp EEEEEESSCH
T ss_pred CcEEEECCCH
Confidence 9999999873
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=4.9e-06 Score=77.13 Aligned_cols=80 Identities=11% Similarity=0.094 Sum_probs=57.5
Q ss_pred CC--CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 85 RK--GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 85 ~~--~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+ +++|||||+||||..+++.+...|+.+|++++++.++.+.+.+++ |.. ..+|.++.+. .+.+.+...
T Consensus 158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~---g~~---~~~d~~~~~~-~~~~~~~~~-- 228 (357)
T 2zb4_A 158 AGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSEL---GFD---AAINYKKDNV-AEQLRESCP-- 228 (357)
T ss_dssp TTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTS---CCS---EEEETTTSCH-HHHHHHHCT--
T ss_pred CCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc---CCc---eEEecCchHH-HHHHHHhcC--
Confidence 47 899999999999999999999999658999999877766554434 322 2357766433 222333222
Q ss_pred CCCcEEEEccc
Q 018819 163 RPLDVLVCNAA 173 (350)
Q Consensus 163 g~id~lv~~Ag 173 (350)
+++|++|+|+|
T Consensus 229 ~~~d~vi~~~G 239 (357)
T 2zb4_A 229 AGVDVYFDNVG 239 (357)
T ss_dssp TCEEEEEESCC
T ss_pred CCCCEEEECCC
Confidence 26999999998
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=98.11 E-value=6.8e-06 Score=75.37 Aligned_cols=80 Identities=19% Similarity=0.176 Sum_probs=58.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.++++|||||+||||..+++.+...|+ +|++++|+.++.+.+. ++ +... .+|.++.+..+.+.+.. . ..+
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~-~~---g~~~---~~d~~~~~~~~~i~~~~-~-~~~ 214 (333)
T 1wly_A 145 PGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETAR-KL---GCHH---TINYSTQDFAEVVREIT-G-GKG 214 (333)
T ss_dssp TTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHH-HH---TCSE---EEETTTSCHHHHHHHHH-T-TCC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH-Hc---CCCE---EEECCCHHHHHHHHHHh-C-CCC
Confidence 578999999999999999999999997 8999999977665543 33 2222 24776655444443332 1 236
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|+|+|.
T Consensus 215 ~d~vi~~~g~ 224 (333)
T 1wly_A 215 VDVVYDSIGK 224 (333)
T ss_dssp EEEEEECSCT
T ss_pred CeEEEECCcH
Confidence 9999999984
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=5.3e-06 Score=75.89 Aligned_cols=79 Identities=19% Similarity=0.230 Sum_probs=58.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.++++|||||+||||..+++.+...|+ +|++++++.++.+.+.+ + +... .+|.++.+..+.+.+... ..+
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~-~---g~~~---~~~~~~~~~~~~~~~~~~--~~~ 209 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALK-A---GAWQ---VINYREEDLVERLKEITG--GKK 209 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHH-H---TCSE---EEETTTSCHHHHHHHHTT--TCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH-c---CCCE---EEECCCccHHHHHHHHhC--CCC
Confidence 588999999999999999999999997 89999998776655433 3 2222 247766554444433321 236
Q ss_pred CcEEEEccc
Q 018819 165 LDVLVCNAA 173 (350)
Q Consensus 165 id~lv~~Ag 173 (350)
+|++|+|+|
T Consensus 210 ~D~vi~~~g 218 (327)
T 1qor_A 210 VRVVYDSVG 218 (327)
T ss_dssp EEEEEECSC
T ss_pred ceEEEECCc
Confidence 999999998
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.5e-05 Score=63.34 Aligned_cols=75 Identities=12% Similarity=0.186 Sum_probs=58.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
..+.++|+|+ |.+|..+++.|.++| +.|++++++++..+...+. .+.++.+|.++++.++++ ....
T Consensus 5 ~~~~v~I~G~-G~iG~~la~~L~~~g-~~V~~id~~~~~~~~~~~~------~~~~~~gd~~~~~~l~~~------~~~~ 70 (141)
T 3llv_A 5 GRYEYIVIGS-EAAGVGLVRELTAAG-KKVLAVDKSKEKIELLEDE------GFDAVIADPTDESFYRSL------DLEG 70 (141)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTT-CCEEEEESCHHHHHHHHHT------TCEEEECCTTCHHHHHHS------CCTT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCC-CeEEEEECCHHHHHHHHHC------CCcEEECCCCCHHHHHhC------Cccc
Confidence 3457999998 789999999999999 5899999998776655432 356788999998876654 2346
Q ss_pred CcEEEEccc
Q 018819 165 LDVLVCNAA 173 (350)
Q Consensus 165 id~lv~~Ag 173 (350)
.|.+|.+.+
T Consensus 71 ~d~vi~~~~ 79 (141)
T 3llv_A 71 VSAVLITGS 79 (141)
T ss_dssp CSEEEECCS
T ss_pred CCEEEEecC
Confidence 899987765
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=8.4e-06 Score=75.47 Aligned_cols=80 Identities=14% Similarity=0.127 Sum_probs=58.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.++++||+||+||||..+++.+...|+ +|++++++.++.+.+ +++ |.. ..+|.++.+..+.+.+.. . .++
T Consensus 162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~-~~~---g~~---~~~~~~~~~~~~~~~~~~-~-~~~ 231 (354)
T 2j8z_A 162 AGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMA-EKL---GAA---AGFNYKKEDFSEATLKFT-K-GAG 231 (354)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH-HHH---TCS---EEEETTTSCHHHHHHHHT-T-TSC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH-HHc---CCc---EEEecCChHHHHHHHHHh-c-CCC
Confidence 588999999999999999999999997 899999988776655 444 222 235666654444433322 1 236
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|+|+|.
T Consensus 232 ~d~vi~~~G~ 241 (354)
T 2j8z_A 232 VNLILDCIGG 241 (354)
T ss_dssp EEEEEESSCG
T ss_pred ceEEEECCCc
Confidence 9999999984
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=7.7e-06 Score=75.08 Aligned_cols=80 Identities=16% Similarity=0.161 Sum_probs=58.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+++++||+|++||||..+++.+...|+ +|++++++.++.+.+.+++. ... .+|.++.+..+.+.+ .. .++
T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g---~~~---~~~~~~~~~~~~~~~-~~--~~~ 218 (336)
T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRFLVEELG---FDG---AIDYKNEDLAAGLKR-EC--PKG 218 (336)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTC---CSE---EEETTTSCHHHHHHH-HC--TTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcC---CCE---EEECCCHHHHHHHHH-hc--CCC
Confidence 588999999999999999999999997 99999999877766545443 322 246665443333332 22 347
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|+|+|.
T Consensus 219 ~d~vi~~~g~ 228 (336)
T 4b7c_A 219 IDVFFDNVGG 228 (336)
T ss_dssp EEEEEESSCH
T ss_pred ceEEEECCCc
Confidence 9999999984
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=4.6e-06 Score=66.18 Aligned_cols=77 Identities=9% Similarity=0.131 Sum_probs=55.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
+++++++|+|+ |++|..+++.|.+.|. .|++++++.+..+. +...+ ..++.+|.++.+.+.++ ...
T Consensus 4 ~~~~~v~I~G~-G~iG~~~a~~l~~~g~-~v~~~d~~~~~~~~----~~~~~--~~~~~~d~~~~~~l~~~------~~~ 69 (144)
T 2hmt_A 4 IKNKQFAVIGL-GRFGGSIVKELHRMGH-EVLAVDINEEKVNA----YASYA--THAVIANATEENELLSL------GIR 69 (144)
T ss_dssp --CCSEEEECC-SHHHHHHHHHHHHTTC-CCEEEESCHHHHHT----TTTTC--SEEEECCTTCHHHHHTT------TGG
T ss_pred CcCCcEEEECC-CHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH----HHHhC--CEEEEeCCCCHHHHHhc------CCC
Confidence 45678999998 9999999999999995 88899998655433 22222 35677899987665443 124
Q ss_pred CCcEEEEcccc
Q 018819 164 PLDVLVCNAAV 174 (350)
Q Consensus 164 ~id~lv~~Ag~ 174 (350)
..|++|++++.
T Consensus 70 ~~d~vi~~~~~ 80 (144)
T 2hmt_A 70 NFEYVIVAIGA 80 (144)
T ss_dssp GCSEEEECCCS
T ss_pred CCCEEEECCCC
Confidence 68999998864
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=1.3e-05 Score=74.24 Aligned_cols=80 Identities=16% Similarity=0.212 Sum_probs=57.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.++++||+|++||||..+++.+...|+ +|++++++.++.+.+ +++ |.. ..+|.++.+..+.+.+.. ...+
T Consensus 170 ~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~-~~~---ga~---~~~d~~~~~~~~~~~~~~--~~~~ 239 (351)
T 1yb5_A 170 AGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIV-LQN---GAH---EVFNHREVNYIDKIKKYV--GEKG 239 (351)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH-HHT---TCS---EEEETTSTTHHHHHHHHH--CTTC
T ss_pred CcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHH-HHc---CCC---EEEeCCCchHHHHHHHHc--CCCC
Confidence 588999999999999999999999997 899999987776533 333 332 235776654444433322 1237
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|+|+|.
T Consensus 240 ~D~vi~~~G~ 249 (351)
T 1yb5_A 240 IDIIIEMLAN 249 (351)
T ss_dssp EEEEEESCHH
T ss_pred cEEEEECCCh
Confidence 9999999984
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=98.05 E-value=1.3e-05 Score=71.64 Aligned_cols=81 Identities=23% Similarity=0.265 Sum_probs=60.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|+++|+|+ ||+|++++..|++.|+.+|++++|+.++.+++.+++......+.+...+..+ +.+.+.
T Consensus 124 ~l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~---l~~~l~------ 193 (283)
T 3jyo_A 124 NAKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARG---IEDVIA------ 193 (283)
T ss_dssp TCCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTT---HHHHHH------
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHH---HHHHHh------
Confidence 468999999998 8999999999999998789999999998888877775332222333344433 333332
Q ss_pred CCCcEEEEcccc
Q 018819 163 RPLDVLVCNAAV 174 (350)
Q Consensus 163 g~id~lv~~Ag~ 174 (350)
..|+|||+...
T Consensus 194 -~~DiVInaTp~ 204 (283)
T 3jyo_A 194 -AADGVVNATPM 204 (283)
T ss_dssp -HSSEEEECSST
T ss_pred -cCCEEEECCCC
Confidence 47999999765
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=97.99 E-value=2.2e-05 Score=71.94 Aligned_cols=121 Identities=9% Similarity=-0.031 Sum_probs=77.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC------cEEEEEecC----hhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHH
Q 018819 87 GSVIITGASSGLGLATAKALAETGK------WHIIMACRD----FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVD 156 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga------~~Vi~~~r~----~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~ 156 (350)
..++||||+|.+|..++..|+.+|. ..|++++++ .++.+.....+......+. .|+...++..+.+
T Consensus 6 ~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~---~~i~~~~~~~~al- 81 (329)
T 1b8p_A 6 MRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLL---AGMTAHADPMTAF- 81 (329)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTE---EEEEEESSHHHHT-
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhccccc---CcEEEecCcHHHh-
Confidence 3799999999999999999999884 278889888 5445443444433111111 2333322333332
Q ss_pred HHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccC
Q 018819 157 TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (350)
Q Consensus 157 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~ 228 (350)
...|++||.||.... + ..+.+ ..+..|+.....+.+.+..+-. +.++||++|...
T Consensus 82 ------~~aD~Vi~~ag~~~~--~--g~~r~---dl~~~N~~i~~~i~~~i~~~~~----p~a~ii~~SNPv 136 (329)
T 1b8p_A 82 ------KDADVALLVGARPRG--P--GMERK---DLLEANAQIFTVQGKAIDAVAS----RNIKVLVVGNPA 136 (329)
T ss_dssp ------TTCSEEEECCCCCCC--T--TCCHH---HHHHHHHHHHHHHHHHHHHHSC----TTCEEEECSSSH
T ss_pred ------CCCCEEEEeCCCCCC--C--CCCHH---HHHHHHHHHHHHHHHHHHHhcC----CCeEEEEccCch
Confidence 368999999997532 1 22333 4578898888888888765420 135899888644
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=4.8e-05 Score=68.88 Aligned_cols=84 Identities=24% Similarity=0.261 Sum_probs=60.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC---hhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD---FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~---~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
.+++|+++|+|+ ||.|++++..|++.|+.+|.+++|+ .++.+++.+++.... ......++..+.+.+.+.+.
T Consensus 145 ~l~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~-~~~v~~~~~~~l~~~~~~l~--- 219 (312)
T 3t4e_A 145 DMRGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENT-DCVVTVTDLADQHAFTEALA--- 219 (312)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHS-SCEEEEEETTCHHHHHHHHH---
T ss_pred CcCCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhcc-CcceEEechHhhhhhHhhcc---
Confidence 468999999997 8999999999999998799999999 777777777664321 12233345555433333322
Q ss_pred HcCCCCcEEEEccccC
Q 018819 160 RSGRPLDVLVCNAAVY 175 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~ 175 (350)
..|+|||+....
T Consensus 220 ----~~DiIINaTp~G 231 (312)
T 3t4e_A 220 ----SADILTNGTKVG 231 (312)
T ss_dssp ----HCSEEEECSSTT
T ss_pred ----CceEEEECCcCC
Confidence 479999987653
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=2.9e-05 Score=71.53 Aligned_cols=80 Identities=20% Similarity=0.278 Sum_probs=56.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHc-CCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~-Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
+++++||+|++||||..+++.+... |+ +|++++++.++.+.+ +++ |... .+|.++.+..+.+ .++... +
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~-~~~---g~~~---~~~~~~~~~~~~~-~~~~~~-~ 239 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAA-KRA---GADY---VINASMQDPLAEI-RRITES-K 239 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHH-HHH---TCSE---EEETTTSCHHHHH-HHHTTT-S
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHH-HHh---CCCE---EecCCCccHHHHH-HHHhcC-C
Confidence 5789999999999999999999999 97 899999987776554 333 3222 2466554333322 222211 4
Q ss_pred CCcEEEEcccc
Q 018819 164 PLDVLVCNAAV 174 (350)
Q Consensus 164 ~id~lv~~Ag~ 174 (350)
++|++|+|+|.
T Consensus 240 ~~d~vi~~~g~ 250 (347)
T 1jvb_A 240 GVDAVIDLNNS 250 (347)
T ss_dssp CEEEEEESCCC
T ss_pred CceEEEECCCC
Confidence 79999999984
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.81 E-value=5.7e-05 Score=69.79 Aligned_cols=79 Identities=18% Similarity=0.217 Sum_probs=57.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.++++||+||+||||..+++.+...|+ +|++++++.++.+.+. ++ |... .+|..+.+..+.+.+ .. .++
T Consensus 167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~-~l---Ga~~---~~~~~~~~~~~~~~~-~~--~~g 235 (353)
T 4dup_A 167 EGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACE-RL---GAKR---GINYRSEDFAAVIKA-ET--GQG 235 (353)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH-HH---TCSE---EEETTTSCHHHHHHH-HH--SSC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH-hc---CCCE---EEeCCchHHHHHHHH-Hh--CCC
Confidence 578999999999999999999999997 8999999987765543 33 3322 245555443333333 32 457
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|+|+|.
T Consensus 236 ~Dvvid~~g~ 245 (353)
T 4dup_A 236 VDIILDMIGA 245 (353)
T ss_dssp EEEEEESCCG
T ss_pred ceEEEECCCH
Confidence 9999999984
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=4.8e-05 Score=70.65 Aligned_cols=75 Identities=16% Similarity=0.256 Sum_probs=53.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh---hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF---LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~---~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
++++++||+|+ ||||..+++.+...|+ +|++++++. ++.+.+ +++ |. ..+ | .+ +-.+.+ .+ ..
T Consensus 179 ~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~-~~~---ga--~~v--~-~~-~~~~~~-~~-~~ 244 (366)
T 2cdc_A 179 LNCRKVLVVGT-GPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVI-EET---KT--NYY--N-SS-NGYDKL-KD-SV 244 (366)
T ss_dssp STTCEEEEESC-HHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHH-HHH---TC--EEE--E-CT-TCSHHH-HH-HH
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHH-HHh---CC--cee--c-hH-HHHHHH-HH-hC
Confidence 45899999999 9999999999999997 999999987 665433 333 22 233 5 54 222222 22 22
Q ss_pred cCCCCcEEEEcccc
Q 018819 161 SGRPLDVLVCNAAV 174 (350)
Q Consensus 161 ~~g~id~lv~~Ag~ 174 (350)
+++|++|+++|.
T Consensus 245 --~~~d~vid~~g~ 256 (366)
T 2cdc_A 245 --GKFDVIIDATGA 256 (366)
T ss_dssp --CCEEEEEECCCC
T ss_pred --CCCCEEEECCCC
Confidence 579999999985
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00034 Score=63.89 Aligned_cols=105 Identities=12% Similarity=0.021 Sum_probs=66.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHcC-CcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 88 SVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~G-a~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
.++||||+|.+|..++..|+++| +..|++++++.+ +....++........+ .. +++.++..+.++ ..|
T Consensus 10 KI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~--~~~~~dL~~~~~~~~v-~~-~~~t~d~~~al~-------gaD 78 (326)
T 1smk_A 10 KVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA--PGVTADISHMDTGAVV-RG-FLGQQQLEAALT-------GMD 78 (326)
T ss_dssp EEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH--HHHHHHHHTSCSSCEE-EE-EESHHHHHHHHT-------TCS
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc--HhHHHHhhcccccceE-EE-EeCCCCHHHHcC-------CCC
Confidence 69999999999999999999987 236888887765 2222223221111111 11 233444444433 689
Q ss_pred EEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHH
Q 018819 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDD 210 (350)
Q Consensus 167 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~ 210 (350)
++|++||.....+ .+.+ ..+..|+.+...+.+.+..+
T Consensus 79 vVi~~ag~~~~~g----~~r~---dl~~~N~~~~~~i~~~i~~~ 115 (326)
T 1smk_A 79 LIIVPAGVPRKPG----MTRD---DLFKINAGIVKTLCEGIAKC 115 (326)
T ss_dssp EEEECCCCCCCSS----CCCS---HHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCcCCCCC----CCHH---HHHHHHHHHHHHHHHHHHhh
Confidence 9999999753211 1222 34778888888888877654
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.76 E-value=6.6e-05 Score=67.66 Aligned_cols=78 Identities=24% Similarity=0.236 Sum_probs=57.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++++++|+|+ ||+|++++..|++.|+.+|++++|+.++.+++.+++..... ++.+.+++. +..
T Consensus 138 ~l~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~-------~~~~~~~~~-------~~~ 202 (297)
T 2egg_A 138 TLDGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRS-------AYFSLAEAE-------TRL 202 (297)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSC-------CEECHHHHH-------HTG
T ss_pred CCCCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccC-------ceeeHHHHH-------hhh
Confidence 467899999997 79999999999999976999999999888888777643211 111222222 223
Q ss_pred CCCcEEEEccccC
Q 018819 163 RPLDVLVCNAAVY 175 (350)
Q Consensus 163 g~id~lv~~Ag~~ 175 (350)
...|+|||+.+..
T Consensus 203 ~~aDivIn~t~~~ 215 (297)
T 2egg_A 203 AEYDIIINTTSVG 215 (297)
T ss_dssp GGCSEEEECSCTT
T ss_pred ccCCEEEECCCCC
Confidence 4689999999864
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00011 Score=65.27 Aligned_cols=76 Identities=21% Similarity=0.254 Sum_probs=57.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++++++|+|+ ||+|++++..|++.| .+|++++|+.++.+++.+.+...+ .+.. +|+ +++. .
T Consensus 116 ~~~~~~vlvlGa-Gg~g~a~a~~L~~~G-~~v~v~~R~~~~a~~l~~~~~~~~-~~~~--~~~---~~~~--------~- 178 (272)
T 1p77_A 116 LRPNQHVLILGA-GGATKGVLLPLLQAQ-QNIVLANRTFSKTKELAERFQPYG-NIQA--VSM---DSIP--------L- 178 (272)
T ss_dssp CCTTCEEEEECC-SHHHHTTHHHHHHTT-CEEEEEESSHHHHHHHHHHHGGGS-CEEE--EEG---GGCC--------C-
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHccccC-CeEE--eeH---HHhc--------c-
Confidence 457899999998 899999999999999 599999999988888877765322 2222 332 1110 1
Q ss_pred CCCcEEEEccccC
Q 018819 163 RPLDVLVCNAAVY 175 (350)
Q Consensus 163 g~id~lv~~Ag~~ 175 (350)
+..|+|||+++..
T Consensus 179 ~~~DivIn~t~~~ 191 (272)
T 1p77_A 179 QTYDLVINATSAG 191 (272)
T ss_dssp SCCSEEEECCCC-
T ss_pred CCCCEEEECCCCC
Confidence 4799999999874
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00011 Score=67.48 Aligned_cols=79 Identities=19% Similarity=0.214 Sum_probs=56.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.++++||+|++||||..+++.+...|+ +|+.++++.++.+.+. ++ |... .+|.++.+. .+.+.++.. ..+
T Consensus 166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~-~~---ga~~---~~d~~~~~~-~~~~~~~~~-~~~ 235 (343)
T 2eih_A 166 PGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAK-AL---GADE---TVNYTHPDW-PKEVRRLTG-GKG 235 (343)
T ss_dssp TTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHH-HH---TCSE---EEETTSTTH-HHHHHHHTT-TTC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH-hc---CCCE---EEcCCcccH-HHHHHHHhC-CCC
Confidence 578999999999999999999999997 8999999877766553 33 3222 247766432 222222221 237
Q ss_pred CcEEEEccc
Q 018819 165 LDVLVCNAA 173 (350)
Q Consensus 165 id~lv~~Ag 173 (350)
+|++|+|+|
T Consensus 236 ~d~vi~~~g 244 (343)
T 2eih_A 236 ADKVVDHTG 244 (343)
T ss_dssp EEEEEESSC
T ss_pred ceEEEECCC
Confidence 999999998
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=6.9e-05 Score=68.63 Aligned_cols=80 Identities=24% Similarity=0.336 Sum_probs=56.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+|+++||+||+||||..+++.+...|+ +|+.++++.++.+.+ +++ |... .+|..+.+..+.+.+ ... ..+
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~-~~~---ga~~---~~~~~~~~~~~~~~~-~~~-~~g 217 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIA-KEY---GAEY---LINASKEDILRQVLK-FTN-GKG 217 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH-HHT---TCSE---EEETTTSCHHHHHHH-HTT-TSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH-HHc---CCcE---EEeCCCchHHHHHHH-HhC-CCC
Confidence 578999999999999999999999997 899999987776633 333 3322 235555333333322 211 236
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|+|+|.
T Consensus 218 ~D~vid~~g~ 227 (334)
T 3qwb_A 218 VDASFDSVGK 227 (334)
T ss_dssp EEEEEECCGG
T ss_pred ceEEEECCCh
Confidence 9999999985
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0003 Score=56.55 Aligned_cols=77 Identities=14% Similarity=0.149 Sum_probs=56.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC-hhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRD-FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~-~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.+.++|+|+ |.+|+.+++.|.+.| ..|++++++ .+..+....... ..+.++.+|.++++.++++ ....
T Consensus 3 ~~~vlI~G~-G~vG~~la~~L~~~g-~~V~vid~~~~~~~~~~~~~~~---~~~~~i~gd~~~~~~l~~a------~i~~ 71 (153)
T 1id1_A 3 KDHFIVCGH-SILAINTILQLNQRG-QNVTVISNLPEDDIKQLEQRLG---DNADVIPGDSNDSSVLKKA------GIDR 71 (153)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTT-CCEEEEECCCHHHHHHHHHHHC---TTCEEEESCTTSHHHHHHH------TTTT
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCC-CCEEEEECCChHHHHHHHHhhc---CCCeEEEcCCCCHHHHHHc------Chhh
Confidence 456888886 999999999999999 588889887 444444443332 2467889999998876553 1236
Q ss_pred CcEEEEccc
Q 018819 165 LDVLVCNAA 173 (350)
Q Consensus 165 id~lv~~Ag 173 (350)
.|.+|.+.+
T Consensus 72 ad~vi~~~~ 80 (153)
T 1id1_A 72 CRAILALSD 80 (153)
T ss_dssp CSEEEECSS
T ss_pred CCEEEEecC
Confidence 888887754
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00012 Score=69.75 Aligned_cols=85 Identities=19% Similarity=0.262 Sum_probs=58.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEE--ccCC---------CHHHHHH
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMH--LDLA---------SLDSVRQ 153 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~--~Dvs---------~~~~v~~ 153 (350)
.|+++||+|++||||..+++.+...|+ +|+++.++.++.+.+ +++ |....+-. .|+. +.+++..
T Consensus 220 ~g~~VlV~GasG~iG~~a~qla~~~Ga-~vi~~~~~~~~~~~~-~~l---Ga~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 294 (447)
T 4a0s_A 220 QGDIVLIWGASGGLGSYAIQFVKNGGG-IPVAVVSSAQKEAAV-RAL---GCDLVINRAELGITDDIADDPRRVVETGRK 294 (447)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH-HHT---TCCCEEEHHHHTCCTTGGGCHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH-Hhc---CCCEEEecccccccccccccccccchhhhH
Confidence 588999999999999999999999997 888888887766554 333 33322221 2221 1234444
Q ss_pred HHHHHHHc-CCCCcEEEEcccc
Q 018819 154 FVDTFRRS-GRPLDVLVCNAAV 174 (350)
Q Consensus 154 ~~~~~~~~-~g~id~lv~~Ag~ 174 (350)
+.+.+.+. .+++|++|+|+|.
T Consensus 295 ~~~~v~~~~g~g~Dvvid~~G~ 316 (447)
T 4a0s_A 295 LAKLVVEKAGREPDIVFEHTGR 316 (447)
T ss_dssp HHHHHHHHHSSCCSEEEECSCH
T ss_pred HHHHHHHHhCCCceEEEECCCc
Confidence 55555443 3479999999984
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00025 Score=63.24 Aligned_cols=75 Identities=20% Similarity=0.338 Sum_probs=57.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++++++|+|+ ||+|++++..|++.|+.+|.+++|+.++.+++.+++...+ .+.....+ + +.
T Consensus 123 ~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~-~~~~~~~~--~---l~---------- 185 (281)
T 3o8q_A 123 LLKGATILLIGA-GGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYG-EVKAQAFE--Q---LK---------- 185 (281)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGS-CEEEEEGG--G---CC----------
T ss_pred CccCCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccC-CeeEeeHH--H---hc----------
Confidence 468999999998 7999999999999997699999999999888888776433 34443321 1 10
Q ss_pred CCCcEEEEcccc
Q 018819 163 RPLDVLVCNAAV 174 (350)
Q Consensus 163 g~id~lv~~Ag~ 174 (350)
...|+|||+...
T Consensus 186 ~~aDiIInaTp~ 197 (281)
T 3o8q_A 186 QSYDVIINSTSA 197 (281)
T ss_dssp SCEEEEEECSCC
T ss_pred CCCCEEEEcCcC
Confidence 368999998765
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0005 Score=53.86 Aligned_cols=75 Identities=19% Similarity=0.265 Sum_probs=55.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
++.++|+|+ |.+|..+++.|.+.| ..|++++++.+..+...+.. .+.++..|.++.+.+.+. .....
T Consensus 4 ~m~i~IiG~-G~iG~~~a~~L~~~g-~~v~~~d~~~~~~~~~~~~~-----~~~~~~~d~~~~~~l~~~------~~~~~ 70 (140)
T 1lss_A 4 GMYIIIAGI-GRVGYTLAKSLSEKG-HDIVLIDIDKDICKKASAEI-----DALVINGDCTKIKTLEDA------GIEDA 70 (140)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHC-----SSEEEESCTTSHHHHHHT------TTTTC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC-CeEEEEECCHHHHHHHHHhc-----CcEEEEcCCCCHHHHHHc------CcccC
Confidence 347899987 999999999999999 58999999877665554332 245677899887764321 13468
Q ss_pred cEEEEccc
Q 018819 166 DVLVCNAA 173 (350)
Q Consensus 166 d~lv~~Ag 173 (350)
|++|.+.+
T Consensus 71 d~vi~~~~ 78 (140)
T 1lss_A 71 DMYIAVTG 78 (140)
T ss_dssp SEEEECCS
T ss_pred CEEEEeeC
Confidence 99999864
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00022 Score=63.31 Aligned_cols=75 Identities=20% Similarity=0.312 Sum_probs=57.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|+++|+|+ ||+|++++..|++.|+.+|++++|+.++.+++.+++.. ..+..+. ..+ +. .
T Consensus 117 ~l~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~--~~~~~~~--~~~---l~-------~-- 179 (272)
T 3pwz_A 117 PLRNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDH--SRLRISR--YEA---LE-------G-- 179 (272)
T ss_dssp CCTTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCC--TTEEEEC--SGG---GT-------T--
T ss_pred CccCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcc--CCeeEee--HHH---hc-------c--
Confidence 568999999997 79999999999999976999999999999888888764 2344332 222 11 1
Q ss_pred CCCcEEEEcccc
Q 018819 163 RPLDVLVCNAAV 174 (350)
Q Consensus 163 g~id~lv~~Ag~ 174 (350)
...|+|||+...
T Consensus 180 ~~~DivInaTp~ 191 (272)
T 3pwz_A 180 QSFDIVVNATSA 191 (272)
T ss_dssp CCCSEEEECSSG
T ss_pred cCCCEEEECCCC
Confidence 368999998755
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00021 Score=66.25 Aligned_cols=75 Identities=19% Similarity=0.206 Sum_probs=55.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.|+++||+|+ |+||..+++.+...|+ +|++++++.++.+.+.+++ |... ..|..+.+.+.+ ..++
T Consensus 187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~l---Ga~~---v~~~~~~~~~~~-------~~~~ 251 (366)
T 1yqd_A 187 PGKHIGIVGL-GGLGHVAVKFAKAFGS-KVTVISTSPSKKEEALKNF---GADS---FLVSRDQEQMQA-------AAGT 251 (366)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESCGGGHHHHHHTS---CCSE---EEETTCHHHHHH-------TTTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhc---CCce---EEeccCHHHHHH-------hhCC
Confidence 6889999996 9999999999999997 8999999887766554444 3322 246666544332 2247
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|+++|.
T Consensus 252 ~D~vid~~g~ 261 (366)
T 1yqd_A 252 LDGIIDTVSA 261 (366)
T ss_dssp EEEEEECCSS
T ss_pred CCEEEECCCc
Confidence 9999999985
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00011 Score=67.50 Aligned_cols=80 Identities=14% Similarity=0.188 Sum_probs=56.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+|+++||+|++++||..+++.+...|+ +|++++++.++.+.+.+ + |... .+|..+.+..+.+.+ .. ...+
T Consensus 144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~-l---ga~~---~~~~~~~~~~~~~~~-~~-~~~g 213 (340)
T 3gms_A 144 RNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLR-L---GAAY---VIDTSTAPLYETVME-LT-NGIG 213 (340)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH-H---TCSE---EEETTTSCHHHHHHH-HT-TTSC
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh-C---CCcE---EEeCCcccHHHHHHH-Hh-CCCC
Confidence 588999999999999999999999997 89999998777655433 3 3332 235555333333322 21 1237
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|+|+|.
T Consensus 214 ~Dvvid~~g~ 223 (340)
T 3gms_A 214 ADAAIDSIGG 223 (340)
T ss_dssp EEEEEESSCH
T ss_pred CcEEEECCCC
Confidence 9999999985
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00011 Score=66.88 Aligned_cols=80 Identities=15% Similarity=0.173 Sum_probs=56.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+|+++||+||+|+||..+++.+...|+ +|++++++.++.+.+. ++ |... ..|.++.+..+.+.+.. ...+
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~-~~---Ga~~---~~~~~~~~~~~~~~~~~--~~~g 209 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAK-AL---GAWE---TIDYSHEDVAKRVLELT--DGKK 209 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHH-HH---TCSE---EEETTTSCHHHHHHHHT--TTCC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH-Hc---CCCE---EEeCCCccHHHHHHHHh--CCCC
Confidence 588999999999999999999999997 8999999887766543 33 3222 23555543333332221 1237
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|+|+|.
T Consensus 210 ~Dvvid~~g~ 219 (325)
T 3jyn_A 210 CPVVYDGVGQ 219 (325)
T ss_dssp EEEEEESSCG
T ss_pred ceEEEECCCh
Confidence 9999999985
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00031 Score=63.76 Aligned_cols=106 Identities=20% Similarity=0.081 Sum_probs=66.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC-cEEEEEec--ChhHHHHHHHHhc----cCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 88 SVIITGASSGLGLATAKALAETGK-WHIIMACR--DFLKAERAAKSAG----MAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga-~~Vi~~~r--~~~~~~~~~~~l~----~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
.++||||+|.+|..++..|+.+|. ..+.++++ +.++.+....++. ..+.++.+...| +++.+.
T Consensus 2 KI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~----d~l~~a------ 71 (313)
T 1hye_A 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVES----DENLRI------ 71 (313)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEE----TTCGGG------
T ss_pred EEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCC----cchHHH------
Confidence 589999999999999999998873 35888888 6543433222221 111222332211 011111
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDL 211 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~ 211 (350)
+...|++||.||..... ..+. ...+..|+.+...+.+.+..+-
T Consensus 72 -l~gaD~Vi~~Ag~~~~~----g~~r---~dl~~~N~~i~~~i~~~i~~~~ 114 (313)
T 1hye_A 72 -IDESDVVIITSGVPRKE----GMSR---MDLAKTNAKIVGKYAKKIAEIC 114 (313)
T ss_dssp -GTTCSEEEECCSCCCCT----TCCH---HHHHHHHHHHHHHHHHHHHHHC
T ss_pred -hCCCCEEEECCCCCCCC----CCcH---HHHHHHHHHHHHHHHHHHHHhC
Confidence 23799999999975321 2233 3458899999999998887653
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00036 Score=64.61 Aligned_cols=77 Identities=17% Similarity=0.203 Sum_probs=56.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
+++++++|+|+ ||+|+.+++.+...|+ +|++++|+.++.+.+.+.... .+.. +..+.+++.+.+.
T Consensus 165 l~~~~VlViGa-GgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~---~~~~---~~~~~~~~~~~~~------- 229 (361)
T 1pjc_A 165 VKPGKVVILGG-GVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGS---RVEL---LYSNSAEIETAVA------- 229 (361)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG---GSEE---EECCHHHHHHHHH-------
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCc---eeEe---eeCCHHHHHHHHc-------
Confidence 56689999999 9999999999999998 999999998887766544321 2212 2234444443332
Q ss_pred CCcEEEEccccC
Q 018819 164 PLDVLVCNAAVY 175 (350)
Q Consensus 164 ~id~lv~~Ag~~ 175 (350)
..|++|++++..
T Consensus 230 ~~DvVI~~~~~~ 241 (361)
T 1pjc_A 230 EADLLIGAVLVP 241 (361)
T ss_dssp TCSEEEECCCCT
T ss_pred CCCEEEECCCcC
Confidence 689999999873
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00029 Score=64.71 Aligned_cols=79 Identities=19% Similarity=0.267 Sum_probs=54.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.|+++||+|++|+||..+++.+...|+ +|++++++.++.+.+. ++ |... ++ |.. +++.+.+.+... ..+
T Consensus 159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~-~~---ga~~-v~--~~~--~~~~~~v~~~~~-~~g 227 (342)
T 4eye_A 159 AGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVK-SV---GADI-VL--PLE--EGWAKAVREATG-GAG 227 (342)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHH-HH---TCSE-EE--ESS--TTHHHHHHHHTT-TSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH-hc---CCcE-Ee--cCc--hhHHHHHHHHhC-CCC
Confidence 588999999999999999999999997 8999999877765443 33 3322 22 333 223333332221 126
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|+|+|.
T Consensus 228 ~Dvvid~~g~ 237 (342)
T 4eye_A 228 VDMVVDPIGG 237 (342)
T ss_dssp EEEEEESCC-
T ss_pred ceEEEECCch
Confidence 9999999984
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0004 Score=60.82 Aligned_cols=81 Identities=22% Similarity=0.260 Sum_probs=60.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh-------------------hHHHHHHHHhccC--CCceEEE
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-------------------LKAERAAKSAGMA--KENYTIM 141 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~-------------------~~~~~~~~~l~~~--~~~v~~~ 141 (350)
.+++++++|.|+ ||+|..+++.|+..|..+|.+++++. .+.+.+.+.+... ..++..+
T Consensus 28 ~l~~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~ 106 (249)
T 1jw9_B 28 ALKDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPV 106 (249)
T ss_dssp HHHHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred HHhCCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEE
Confidence 467789999996 79999999999999977999999886 6777776666543 3456666
Q ss_pred EccCCCHHHHHHHHHHHHHcCCCCcEEEEcc
Q 018819 142 HLDLASLDSVRQFVDTFRRSGRPLDVLVCNA 172 (350)
Q Consensus 142 ~~Dvs~~~~v~~~~~~~~~~~g~id~lv~~A 172 (350)
..++++ +.+.++++ ..|+||.+.
T Consensus 107 ~~~~~~-~~~~~~~~-------~~DvVi~~~ 129 (249)
T 1jw9_B 107 NALLDD-AELAALIA-------EHDLVLDCT 129 (249)
T ss_dssp CSCCCH-HHHHHHHH-------TSSEEEECC
T ss_pred eccCCH-hHHHHHHh-------CCCEEEEeC
Confidence 666763 44444433 589999875
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00034 Score=64.81 Aligned_cols=78 Identities=17% Similarity=0.152 Sum_probs=54.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.++++||+||+|+||..+++.+...|+ +|+.++++.++.+.+. ++ |... . +|..+.+ +.+.+.+.. .++
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~-~~---Ga~~-~--~~~~~~~-~~~~~~~~~--~~g 231 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLK-SL---GCDR-P--INYKTEP-VGTVLKQEY--PEG 231 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHH-HT---TCSE-E--EETTTSC-HHHHHHHHC--TTC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHH-Hc---CCcE-E--EecCChh-HHHHHHHhc--CCC
Confidence 578999999999999999999999997 8999999876665443 33 3332 2 3444422 233333321 247
Q ss_pred CcEEEEccc
Q 018819 165 LDVLVCNAA 173 (350)
Q Consensus 165 id~lv~~Ag 173 (350)
+|++|+|+|
T Consensus 232 ~D~vid~~g 240 (362)
T 2c0c_A 232 VDVVYESVG 240 (362)
T ss_dssp EEEEEECSC
T ss_pred CCEEEECCC
Confidence 999999987
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00048 Score=64.18 Aligned_cols=78 Identities=15% Similarity=0.164 Sum_probs=58.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+.+++++|+|+ |+||+.+++.+...|+ +|++++|+.++.+.+.+.+. ..+ .+|.++.+++.+++.
T Consensus 165 ~l~g~~V~ViG~-G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~~~~~~g---~~~---~~~~~~~~~l~~~l~------ 230 (377)
T 2vhw_A 165 GVEPADVVVIGA-GTAGYNAARIANGMGA-TVTVLDINIDKLRQLDAEFC---GRI---HTRYSSAYELEGAVK------ 230 (377)
T ss_dssp TBCCCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTT---TSS---EEEECCHHHHHHHHH------
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhcC---Cee---EeccCCHHHHHHHHc------
Confidence 468899999998 9999999999999997 89999999877766554442 222 234455566655543
Q ss_pred CCCcEEEEccccC
Q 018819 163 RPLDVLVCNAAVY 175 (350)
Q Consensus 163 g~id~lv~~Ag~~ 175 (350)
..|++|++++..
T Consensus 231 -~aDvVi~~~~~p 242 (377)
T 2vhw_A 231 -RADLVIGAVLVP 242 (377)
T ss_dssp -HCSEEEECCCCT
T ss_pred -CCCEEEECCCcC
Confidence 589999998863
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00053 Score=63.60 Aligned_cols=71 Identities=18% Similarity=0.279 Sum_probs=57.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
+.|+|.|+ |++|+.+++.|++. ..|.+.+++.+.++.+. ..+..+.+|++|.+++.++++ ..|
T Consensus 17 mkilvlGa-G~vG~~~~~~L~~~--~~v~~~~~~~~~~~~~~-------~~~~~~~~d~~d~~~l~~~~~-------~~D 79 (365)
T 3abi_A 17 MKVLILGA-GNIGRAIAWDLKDE--FDVYIGDVNNENLEKVK-------EFATPLKVDASNFDKLVEVMK-------EFE 79 (365)
T ss_dssp CEEEEECC-SHHHHHHHHHHTTT--SEEEEEESCHHHHHHHT-------TTSEEEECCTTCHHHHHHHHT-------TCS
T ss_pred cEEEEECC-CHHHHHHHHHHhcC--CCeEEEEcCHHHHHHHh-------ccCCcEEEecCCHHHHHHHHh-------CCC
Confidence 36899998 99999999999765 48889999977766542 235678899999998888765 579
Q ss_pred EEEEcccc
Q 018819 167 VLVCNAAV 174 (350)
Q Consensus 167 ~lv~~Ag~ 174 (350)
+|||+++.
T Consensus 80 vVi~~~p~ 87 (365)
T 3abi_A 80 LVIGALPG 87 (365)
T ss_dssp EEEECCCG
T ss_pred EEEEecCC
Confidence 99999875
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00042 Score=66.28 Aligned_cols=85 Identities=20% Similarity=0.213 Sum_probs=60.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEE--cc--------CCCHHHHHHH
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMH--LD--------LASLDSVRQF 154 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~--~D--------vs~~~~v~~~ 154 (350)
.|.++||+|++|+||...++.+...|+ +|+++.++.++.+.+ +++ |....+-. .| .++.++++++
T Consensus 228 ~g~~VlV~GasG~vG~~avqlak~~Ga-~vi~~~~~~~~~~~~-~~l---Ga~~vi~~~~~d~~~~~~~~~~~~~~~~~~ 302 (456)
T 3krt_A 228 QGDNVLIWGASGGLGSYATQFALAGGA-NPICVVSSPQKAEIC-RAM---GAEAIIDRNAEGYRFWKDENTQDPKEWKRF 302 (456)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH-HHH---TCCEEEETTTTTCCSEEETTEECHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEECCHHHHHHH-Hhh---CCcEEEecCcCcccccccccccchHHHHHH
Confidence 578999999999999999999999997 788888887766544 344 33221111 11 2456666667
Q ss_pred HHHHHHcC--CCCcEEEEcccc
Q 018819 155 VDTFRRSG--RPLDVLVCNAAV 174 (350)
Q Consensus 155 ~~~~~~~~--g~id~lv~~Ag~ 174 (350)
.+.+.+.. .++|++|.++|.
T Consensus 303 ~~~i~~~t~g~g~Dvvid~~G~ 324 (456)
T 3krt_A 303 GKRIRELTGGEDIDIVFEHPGR 324 (456)
T ss_dssp HHHHHHHHTSCCEEEEEECSCH
T ss_pred HHHHHHHhCCCCCcEEEEcCCc
Confidence 67666542 379999999884
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00067 Score=62.16 Aligned_cols=77 Identities=18% Similarity=0.137 Sum_probs=55.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.++++||+|+ ||||..+++.+...|+ +|+.++++.++.+.+. ++ |... .+|.++.+ +.+.+.++. ++
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~-~l---Ga~~---~~d~~~~~-~~~~~~~~~---~~ 230 (339)
T 1rjw_A 164 PGEWVAIYGI-GGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAK-EL---GADL---VVNPLKED-AAKFMKEKV---GG 230 (339)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTC-EEEEECSCHHHHHHHH-HT---TCSE---EECTTTSC-HHHHHHHHH---SS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH-HC---CCCE---EecCCCcc-HHHHHHHHh---CC
Confidence 5789999999 8899999999999997 9999999877766543 33 3321 24766543 222233332 47
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|+++|.
T Consensus 231 ~d~vid~~g~ 240 (339)
T 1rjw_A 231 VHAAVVTAVS 240 (339)
T ss_dssp EEEEEESSCC
T ss_pred CCEEEECCCC
Confidence 9999999984
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0007 Score=62.26 Aligned_cols=79 Identities=11% Similarity=0.032 Sum_probs=54.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
++++||+||+|+||...++.+...|+ +|++++++.++.+.+. ++ |... ..|..+.+..+.+. ++... .++
T Consensus 165 ~~~vli~gg~g~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~-~~---Ga~~---~~~~~~~~~~~~v~-~~~~~-~g~ 234 (349)
T 3pi7_A 165 EKAFVMTAGASQLCKLIIGLAKEEGF-RPIVTVRRDEQIALLK-DI---GAAH---VLNEKAPDFEATLR-EVMKA-EQP 234 (349)
T ss_dssp CSEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESCGGGHHHHH-HH---TCSE---EEETTSTTHHHHHH-HHHHH-HCC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH-Hc---CCCE---EEECCcHHHHHHHH-HHhcC-CCC
Confidence 47999999999999999999999997 8999999887765543 33 3322 23554433333332 22221 269
Q ss_pred cEEEEcccc
Q 018819 166 DVLVCNAAV 174 (350)
Q Consensus 166 d~lv~~Ag~ 174 (350)
|++|+|+|.
T Consensus 235 D~vid~~g~ 243 (349)
T 3pi7_A 235 RIFLDAVTG 243 (349)
T ss_dssp CEEEESSCH
T ss_pred cEEEECCCC
Confidence 999999985
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00097 Score=61.25 Aligned_cols=78 Identities=15% Similarity=0.214 Sum_probs=55.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+|+++||+||+|+||...++.+...|+ +|+.++++.++.+.+.+ + |... . .|..+ ++.+.+.++ ..++
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~-l---Ga~~-v--i~~~~--~~~~~~~~~--~~~g 217 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKK-M---GADI-V--LNHKE--SLLNQFKTQ--GIEL 217 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHH-H---TCSE-E--ECTTS--CHHHHHHHH--TCCC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh-c---CCcE-E--EECCc--cHHHHHHHh--CCCC
Confidence 688999999999999999999999997 89999998777655433 3 3322 2 34333 223333333 3347
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|+++|.
T Consensus 218 ~Dvv~d~~g~ 227 (346)
T 3fbg_A 218 VDYVFCTFNT 227 (346)
T ss_dssp EEEEEESSCH
T ss_pred ccEEEECCCc
Confidence 9999999874
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00084 Score=60.57 Aligned_cols=101 Identities=16% Similarity=0.048 Sum_probs=64.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC-cEEEEEec--ChhHHHHHHHHhcc---CCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 88 SVIITGASSGLGLATAKALAETGK-WHIIMACR--DFLKAERAAKSAGM---AKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga-~~Vi~~~r--~~~~~~~~~~~l~~---~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
.++||||+|.+|..++..|+..|. ..++++++ +.++++....++.. ...++.+.. | +.+.
T Consensus 2 KI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~-~--~~~a----------- 67 (303)
T 1o6z_A 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ-G--GYED----------- 67 (303)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE-C--CGGG-----------
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEe-C--CHHH-----------
Confidence 589999999999999999998873 35888888 66544332333321 122333332 2 2111
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHH
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLD 209 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~ 209 (350)
+...|++||.||..... ..+.+ ..+..|+.+...+.+.+..
T Consensus 68 ~~~aDvVi~~ag~~~~~----g~~r~---dl~~~N~~i~~~i~~~i~~ 108 (303)
T 1o6z_A 68 TAGSDVVVITAGIPRQP----GQTRI---DLAGDNAPIMEDIQSSLDE 108 (303)
T ss_dssp GTTCSEEEECCCCCCCT----TCCHH---HHHHHHHHHHHHHHHHHHT
T ss_pred hCCCCEEEEcCCCCCCC----CCCHH---HHHHHHHHHHHHHHHHHHH
Confidence 23699999999975321 22333 3478888888877777644
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0014 Score=58.53 Aligned_cols=89 Identities=20% Similarity=0.403 Sum_probs=65.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh------------------hHHHHHHHHhcc--CCCceEEEE
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF------------------LKAERAAKSAGM--AKENYTIMH 142 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~------------------~~~~~~~~~l~~--~~~~v~~~~ 142 (350)
.+++++++|.|+ ||+|..+++.|+..|..++.+++.+. .+.+.+.+.+.. ...++..+.
T Consensus 33 kL~~~~VlVvGa-GGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~ 111 (292)
T 3h8v_A 33 KIRTFAVAIVGV-GGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHN 111 (292)
T ss_dssp GGGGCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred HHhCCeEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEec
Confidence 467789999986 89999999999999988999998764 445555555543 345677777
Q ss_pred ccCCCHHHHHHHHHHHHHc----CCCCcEEEEcc
Q 018819 143 LDLASLDSVRQFVDTFRRS----GRPLDVLVCNA 172 (350)
Q Consensus 143 ~Dvs~~~~v~~~~~~~~~~----~g~id~lv~~A 172 (350)
.++++.+.++.+++.+... ....|+||.+.
T Consensus 112 ~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~ 145 (292)
T 3h8v_A 112 YNITTVENFQHFMDRISNGGLEEGKPVDLVLSCV 145 (292)
T ss_dssp CCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECC
T ss_pred ccCCcHHHHHHHhhhhcccccccCCCCCEEEECC
Confidence 7888877777777654321 13688888664
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0008 Score=61.74 Aligned_cols=76 Identities=16% Similarity=0.259 Sum_probs=52.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.|+++||+||+|+||..+++.+...|+ +|+.+ ++.++.+.+ +++ |... +| .+.+ +.+.+.+... ..+
T Consensus 150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~-~~l---Ga~~----i~-~~~~-~~~~~~~~~~-~~g 216 (343)
T 3gaz_A 150 DGQTVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYV-RDL---GATP----ID-ASRE-PEDYAAEHTA-GQG 216 (343)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHH-HHH---TSEE----EE-TTSC-HHHHHHHHHT-TSC
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHH-HHc---CCCE----ec-cCCC-HHHHHHHHhc-CCC
Confidence 588999999999999999999999997 88888 666665433 333 3332 34 3322 3333333322 236
Q ss_pred CcEEEEccc
Q 018819 165 LDVLVCNAA 173 (350)
Q Consensus 165 id~lv~~Ag 173 (350)
+|++|+|+|
T Consensus 217 ~D~vid~~g 225 (343)
T 3gaz_A 217 FDLVYDTLG 225 (343)
T ss_dssp EEEEEESSC
T ss_pred ceEEEECCC
Confidence 999999988
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00076 Score=61.98 Aligned_cols=80 Identities=25% Similarity=0.331 Sum_probs=53.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.|+++||+|+ |+||..+++.+...|+.+|+.++++.++.+.+. ++ |... . .|..+.+ +.+.+.++.. ..+
T Consensus 167 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~-~~---Ga~~-~--~~~~~~~-~~~~v~~~~~-g~g 236 (348)
T 2d8a_A 167 SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSDFRRELAK-KV---GADY-V--INPFEED-VVKEVMDITD-GNG 236 (348)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHH-HH---TCSE-E--ECTTTSC-HHHHHHHHTT-TSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-Hh---CCCE-E--ECCCCcC-HHHHHHHHcC-CCC
Confidence 7889999999 999999999999999658999999876655443 33 2221 2 3554432 2222222211 136
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|+++|.
T Consensus 237 ~D~vid~~g~ 246 (348)
T 2d8a_A 237 VDVFLEFSGA 246 (348)
T ss_dssp EEEEEECSCC
T ss_pred CCEEEECCCC
Confidence 9999999984
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00065 Score=61.10 Aligned_cols=73 Identities=15% Similarity=0.160 Sum_probs=52.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCC-HHHHHHHHHHHHHcCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS-LDSVRQFVDTFRRSGR 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~-~~~v~~~~~~~~~~~g 163 (350)
.|++++|+|++|++|..+++.+...|+ +|+.++++.++.+.+ +++ |... ..|..+ .+.. +.+ +
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~-~~~---ga~~---~~~~~~~~~~~----~~~----~ 188 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALP-LAL---GAEE---AATYAEVPERA----KAW----G 188 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHH-HHT---TCSE---EEEGGGHHHHH----HHT----T
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH-Hhc---CCCE---EEECCcchhHH----HHh----c
Confidence 578999999999999999999999997 899999987776554 333 3322 235554 3222 222 4
Q ss_pred CCcEEEEcccc
Q 018819 164 PLDVLVCNAAV 174 (350)
Q Consensus 164 ~id~lv~~Ag~ 174 (350)
++|++|+ +|.
T Consensus 189 ~~d~vid-~g~ 198 (302)
T 1iz0_A 189 GLDLVLE-VRG 198 (302)
T ss_dssp SEEEEEE-CSC
T ss_pred CceEEEE-CCH
Confidence 7999999 874
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.002 Score=59.49 Aligned_cols=84 Identities=17% Similarity=0.109 Sum_probs=60.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.|.++||+|+ |++|...++.....|+.+|+.+++++++.+.+.+ + ...+..+..|-.+.+++.+.+.++.. ..+
T Consensus 179 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~-l---~~~~~~~~~~~~~~~~~~~~v~~~t~-g~g 252 (363)
T 3m6i_A 179 LGDPVLICGA-GPIGLITMLCAKAAGACPLVITDIDEGRLKFAKE-I---CPEVVTHKVERLSAEESAKKIVESFG-GIE 252 (363)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHH-H---CTTCEEEECCSCCHHHHHHHHHHHTS-SCC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-h---chhcccccccccchHHHHHHHHHHhC-CCC
Confidence 5789999998 9999999998889998559999888877665443 3 23444555665566665554444322 237
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|.++|.
T Consensus 253 ~Dvvid~~g~ 262 (363)
T 3m6i_A 253 PAVALECTGV 262 (363)
T ss_dssp CSEEEECSCC
T ss_pred CCEEEECCCC
Confidence 9999999884
|
| >1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00073 Score=60.86 Aligned_cols=84 Identities=17% Similarity=0.170 Sum_probs=51.0
Q ss_pred EEcCCCc-hHHHHHHHHHHcCCcEEEEEecChhH--------HHHHHHHhcc---CCCceEEEEccCCCHHHHHHHHHHH
Q 018819 91 ITGASSG-LGLATAKALAETGKWHIIMACRDFLK--------AERAAKSAGM---AKENYTIMHLDLASLDSVRQFVDTF 158 (350)
Q Consensus 91 ItGgs~g-IG~~ia~~la~~Ga~~Vi~~~r~~~~--------~~~~~~~l~~---~~~~v~~~~~Dvs~~~~v~~~~~~~ 158 (350)
||-=|+| .|.++|+.++++|| .|+++.+...- .....+.+.. ....+..+.+|+...+++.+.+...
T Consensus 59 ItN~SSGkmG~aiAe~~~~~Ga-~V~lv~g~~sl~p~~r~~~~~~~~~~~~~~~~~~~~~~~i~v~v~sa~~m~~av~~~ 137 (313)
T 1p9o_A 59 LDNFSSGRRGATSAEAFLAAGY-GVLFLYRARSAFPYAHRFPPQTWLSALRPSGPALSGLLSLEAEENALPGFAEALRSY 137 (313)
T ss_dssp EEECCCCHHHHHHHHHHHHTTC-EEEEEEETTSCCTTGGGSCHHHHHHHCEECCC-CCSEEEEEEETTTSTTHHHHHHHH
T ss_pred ecCCCCcHHHHHHHHHHHHCCC-EEEEEecCCCcCcchhccCccchhhhhccccccccccceeeeccccHHHHHHHHHHH
Confidence 3333446 99999999999997 78777764210 0011121111 1123445666777666666555433
Q ss_pred ------------------------------HHcCCCCcEEEEccccC
Q 018819 159 ------------------------------RRSGRPLDVLVCNAAVY 175 (350)
Q Consensus 159 ------------------------------~~~~g~id~lv~~Ag~~ 175 (350)
.+.++..|++|.+|++.
T Consensus 138 ~~~~~~~~l~~i~f~tv~eyl~~L~~~~~~l~~~~~~di~i~aAAVs 184 (313)
T 1p9o_A 138 QEAAAAGTFLVVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAAVS 184 (313)
T ss_dssp HHHHHHTCEEEEEECBHHHHHHHHHHHHHHHGGGGGGEEEEECSBCC
T ss_pred hhhhccccceeeccccHHHHHHHHHHhhHHhhccCCCCEEEECCchh
Confidence 23457899999999996
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00093 Score=53.79 Aligned_cols=76 Identities=13% Similarity=0.183 Sum_probs=54.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhc-cCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG-MAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~-~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
..+++++|.|+ |.+|..+++.|.+.|. .|++++|+.+..+. +. .. ...++..|.++.+.+.+. ..
T Consensus 17 ~~~~~v~IiG~-G~iG~~la~~L~~~g~-~V~vid~~~~~~~~----~~~~~--g~~~~~~d~~~~~~l~~~------~~ 82 (155)
T 2g1u_A 17 QKSKYIVIFGC-GRLGSLIANLASSSGH-SVVVVDKNEYAFHR----LNSEF--SGFTVVGDAAEFETLKEC------GM 82 (155)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESCGGGGGG----SCTTC--CSEEEESCTTSHHHHHTT------TG
T ss_pred cCCCcEEEECC-CHHHHHHHHHHHhCCC-eEEEEECCHHHHHH----HHhcC--CCcEEEecCCCHHHHHHc------Cc
Confidence 35678999986 9999999999999995 89999998766433 22 22 245667888886654321 12
Q ss_pred CCCcEEEEccc
Q 018819 163 RPLDVLVCNAA 173 (350)
Q Consensus 163 g~id~lv~~Ag 173 (350)
...|++|.+.+
T Consensus 83 ~~ad~Vi~~~~ 93 (155)
T 2g1u_A 83 EKADMVFAFTN 93 (155)
T ss_dssp GGCSEEEECSS
T ss_pred ccCCEEEEEeC
Confidence 36899998865
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0018 Score=51.10 Aligned_cols=72 Identities=7% Similarity=0.050 Sum_probs=55.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
.++|.|+ |.+|..+++.|.+.| ..|++++++.+..+.+.+ . .+.++.+|.++++.++++ .....|.
T Consensus 9 ~viIiG~-G~~G~~la~~L~~~g-~~v~vid~~~~~~~~~~~----~--g~~~i~gd~~~~~~l~~a------~i~~ad~ 74 (140)
T 3fwz_A 9 HALLVGY-GRVGSLLGEKLLASD-IPLVVIETSRTRVDELRE----R--GVRAVLGNAANEEIMQLA------HLECAKW 74 (140)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTT-CCEEEEESCHHHHHHHHH----T--TCEEEESCTTSHHHHHHT------TGGGCSE
T ss_pred CEEEECc-CHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHH----c--CCCEEECCCCCHHHHHhc------CcccCCE
Confidence 5788886 889999999999999 599999999877766543 1 356788999998876553 1135788
Q ss_pred EEEccc
Q 018819 168 LVCNAA 173 (350)
Q Consensus 168 lv~~Ag 173 (350)
+|.+.+
T Consensus 75 vi~~~~ 80 (140)
T 3fwz_A 75 LILTIP 80 (140)
T ss_dssp EEECCS
T ss_pred EEEECC
Confidence 887654
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0009 Score=55.41 Aligned_cols=77 Identities=12% Similarity=0.067 Sum_probs=55.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHc-CCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~-Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
+.++.++|.| .|.+|..+++.|.+. | ..|++++++.+..+.+.+ .+ +.++.+|.++.+.+.++ ...
T Consensus 37 ~~~~~v~IiG-~G~~G~~~a~~L~~~~g-~~V~vid~~~~~~~~~~~----~g--~~~~~gd~~~~~~l~~~-----~~~ 103 (183)
T 3c85_A 37 PGHAQVLILG-MGRIGTGAYDELRARYG-KISLGIEIREEAAQQHRS----EG--RNVISGDATDPDFWERI-----LDT 103 (183)
T ss_dssp CTTCSEEEEC-CSHHHHHHHHHHHHHHC-SCEEEEESCHHHHHHHHH----TT--CCEEECCTTCHHHHHTB-----CSC
T ss_pred CCCCcEEEEC-CCHHHHHHHHHHHhccC-CeEEEEECCHHHHHHHHH----CC--CCEEEcCCCCHHHHHhc-----cCC
Confidence 4566788888 499999999999999 9 589999999877655432 22 45677899987754432 013
Q ss_pred CCCcEEEEccc
Q 018819 163 RPLDVLVCNAA 173 (350)
Q Consensus 163 g~id~lv~~Ag 173 (350)
...|.+|.+.+
T Consensus 104 ~~ad~vi~~~~ 114 (183)
T 3c85_A 104 GHVKLVLLAMP 114 (183)
T ss_dssp CCCCEEEECCS
T ss_pred CCCCEEEEeCC
Confidence 46899988754
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00024 Score=56.55 Aligned_cols=71 Identities=13% Similarity=0.198 Sum_probs=52.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
+++++|.|+ |++|+.+++.|.+.|+ .|++++|+.++.+++.+++. .... +..+. .+++. ..
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~g~-~v~v~~r~~~~~~~~a~~~~-----~~~~--~~~~~---~~~~~-------~~ 81 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYPQY-KVTVAGRNIDHVRAFAEKYE-----YEYV--LINDI---DSLIK-------NN 81 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTTTC-EEEEEESCHHHHHHHHHHHT-----CEEE--ECSCH---HHHHH-------TC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEcCCHHHHHHHHHHhC-----CceE--eecCH---HHHhc-------CC
Confidence 678999996 9999999999999996 59999999888877766653 1221 23333 22322 58
Q ss_pred cEEEEccccC
Q 018819 166 DVLVCNAAVY 175 (350)
Q Consensus 166 d~lv~~Ag~~ 175 (350)
|++|++.+..
T Consensus 82 Divi~at~~~ 91 (144)
T 3oj0_A 82 DVIITATSSK 91 (144)
T ss_dssp SEEEECSCCS
T ss_pred CEEEEeCCCC
Confidence 9999998753
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00086 Score=61.50 Aligned_cols=78 Identities=21% Similarity=0.224 Sum_probs=53.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.|.++||+|+ |++|..+++.+...|+.+|+.++++.++.+.+ ++. .. . ..|..+. ++.+.+.++. .++
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~----~~l-a~-~--v~~~~~~-~~~~~~~~~~--~~g 231 (343)
T 2dq4_A 164 SGKSVLITGA-GPIGLMAAMVVRASGAGPILVSDPNPYRLAFA----RPY-AD-R--LVNPLEE-DLLEVVRRVT--GSG 231 (343)
T ss_dssp TTSCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHGGG----TTT-CS-E--EECTTTS-CHHHHHHHHH--SSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH----HHh-HH-h--ccCcCcc-CHHHHHHHhc--CCC
Confidence 6789999999 99999999988889965799999886654432 211 11 1 2455542 2333334433 347
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|+++|.
T Consensus 232 ~D~vid~~g~ 241 (343)
T 2dq4_A 232 VEVLLEFSGN 241 (343)
T ss_dssp EEEEEECSCC
T ss_pred CCEEEECCCC
Confidence 9999999884
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0017 Score=61.05 Aligned_cols=74 Identities=24% Similarity=0.430 Sum_probs=55.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+.+++++|.|+ |++|+.+++.|...|+.+|++++|+.++.++..+.+. .. . .+.. ++.+++.
T Consensus 164 ~l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g---~~--~--~~~~---~l~~~l~------ 226 (404)
T 1gpj_A 164 SLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLG---GE--A--VRFD---ELVDHLA------ 226 (404)
T ss_dssp CCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHT---CE--E--CCGG---GHHHHHH------
T ss_pred cccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcC---Cc--e--ecHH---hHHHHhc------
Confidence 368999999998 9999999999999997689999999877766666553 22 2 2322 2333322
Q ss_pred CCCcEEEEcccc
Q 018819 163 RPLDVLVCNAAV 174 (350)
Q Consensus 163 g~id~lv~~Ag~ 174 (350)
..|++|++.+.
T Consensus 227 -~aDvVi~at~~ 237 (404)
T 1gpj_A 227 -RSDVVVSATAA 237 (404)
T ss_dssp -TCSEEEECCSS
T ss_pred -CCCEEEEccCC
Confidence 68999999865
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.004 Score=53.03 Aligned_cols=73 Identities=23% Similarity=0.238 Sum_probs=55.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
.++|+|+ |.+|..+++.|.++| ..|++++++.+..+.+.+.. .+.++.+|.++++.++++ .....|.
T Consensus 2 ~iiIiG~-G~~G~~la~~L~~~g-~~v~vid~~~~~~~~l~~~~-----~~~~i~gd~~~~~~l~~a------~i~~ad~ 68 (218)
T 3l4b_C 2 KVIIIGG-ETTAYYLARSMLSRK-YGVVIINKDRELCEEFAKKL-----KATIIHGDGSHKEILRDA------EVSKNDV 68 (218)
T ss_dssp CEEEECC-HHHHHHHHHHHHHTT-CCEEEEESCHHHHHHHHHHS-----SSEEEESCTTSHHHHHHH------TCCTTCE
T ss_pred EEEEECC-CHHHHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHc-----CCeEEEcCCCCHHHHHhc------CcccCCE
Confidence 4889996 899999999999999 58999999988776655432 356788999998776643 1236787
Q ss_pred EEEccc
Q 018819 168 LVCNAA 173 (350)
Q Consensus 168 lv~~Ag 173 (350)
+|.+.+
T Consensus 69 vi~~~~ 74 (218)
T 3l4b_C 69 VVILTP 74 (218)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 776543
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0017 Score=60.27 Aligned_cols=76 Identities=20% Similarity=0.317 Sum_probs=51.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.|+++||+||+|+||..+++.+...|+ +|+.+++ .++.+.+ +++ |... . +|..+.+.. +++.+ .++
T Consensus 183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga-~Vi~~~~-~~~~~~~-~~l---Ga~~-v--~~~~~~~~~----~~~~~-~~g 248 (375)
T 2vn8_A 183 TGKRVLILGASGGVGTFAIQVMKAWDA-HVTAVCS-QDASELV-RKL---GADD-V--IDYKSGSVE----EQLKS-LKP 248 (375)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC-GGGHHHH-HHT---TCSE-E--EETTSSCHH----HHHHT-SCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEeC-hHHHHHH-HHc---CCCE-E--EECCchHHH----HHHhh-cCC
Confidence 578999999999999999999999997 7888774 4444333 343 3332 2 355443322 22332 257
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|+++|.
T Consensus 249 ~D~vid~~g~ 258 (375)
T 2vn8_A 249 FDFILDNVGG 258 (375)
T ss_dssp BSEEEESSCT
T ss_pred CCEEEECCCC
Confidence 9999999985
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0032 Score=55.06 Aligned_cols=81 Identities=23% Similarity=0.289 Sum_probs=56.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh-------------------hHHHHHHHHhccC--CCceEEE
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-------------------LKAERAAKSAGMA--KENYTIM 141 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~-------------------~~~~~~~~~l~~~--~~~v~~~ 141 (350)
.+++++++|.|+ ||+|.++++.|+..|..++.+++++. .+.+.+.+.+... +.++..+
T Consensus 25 ~l~~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~ 103 (251)
T 1zud_1 25 KLLDSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTAL 103 (251)
T ss_dssp HHHTCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred HHhcCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 467789999997 78999999999999988898886542 4555555555432 3455666
Q ss_pred EccCCCHHHHHHHHHHHHHcCCCCcEEEEcc
Q 018819 142 HLDLASLDSVRQFVDTFRRSGRPLDVLVCNA 172 (350)
Q Consensus 142 ~~Dvs~~~~v~~~~~~~~~~~g~id~lv~~A 172 (350)
..++++ +.+.++++ ..|+||++.
T Consensus 104 ~~~~~~-~~~~~~~~-------~~DvVi~~~ 126 (251)
T 1zud_1 104 QQRLTG-EALKDAVA-------RADVVLDCT 126 (251)
T ss_dssp CSCCCH-HHHHHHHH-------HCSEEEECC
T ss_pred eccCCH-HHHHHHHh-------cCCEEEECC
Confidence 555653 44454444 478888774
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0016 Score=60.09 Aligned_cols=83 Identities=12% Similarity=0.049 Sum_probs=50.0
Q ss_pred CC-CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHH---HHHHHHhccCCCceEEEEccCCCH--HHHHHHHHHH
Q 018819 85 RK-GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKA---ERAAKSAGMAKENYTIMHLDLASL--DSVRQFVDTF 158 (350)
Q Consensus 85 ~~-~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~---~~~~~~l~~~~~~v~~~~~Dvs~~--~~v~~~~~~~ 158 (350)
.| .++||+||+|++|...++.+...|+ +|+.+.++.++. .+..+++ |... ++ |..+. +++.+.+.++
T Consensus 166 ~g~~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~~~~l---Ga~~-vi--~~~~~~~~~~~~~i~~~ 238 (364)
T 1gu7_A 166 PGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKEL---GATQ-VI--TEDQNNSREFGPTIKEW 238 (364)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHH---TCSE-EE--EHHHHHCGGGHHHHHHH
T ss_pred CCCcEEEECCCCcHHHHHHHHHHHHCCC-EEEEEecCccccHHHHHHHHhc---CCeE-EE--ecCccchHHHHHHHHHH
Confidence 47 8999999999999999998888997 777776654431 2222333 3332 22 22110 1222222222
Q ss_pred HH-cCCCCcEEEEcccc
Q 018819 159 RR-SGRPLDVLVCNAAV 174 (350)
Q Consensus 159 ~~-~~g~id~lv~~Ag~ 174 (350)
.. ..+++|++|.++|.
T Consensus 239 t~~~~~g~Dvvid~~G~ 255 (364)
T 1gu7_A 239 IKQSGGEAKLALNCVGG 255 (364)
T ss_dssp HHHHTCCEEEEEESSCH
T ss_pred hhccCCCceEEEECCCc
Confidence 20 12479999999884
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00042 Score=61.64 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=37.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA 127 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~ 127 (350)
.+++++++|+|+ ||+|++++..|++.|+.+|++++|+.++.+++
T Consensus 114 ~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~l 157 (277)
T 3don_A 114 GIEDAYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRFNNW 157 (277)
T ss_dssp TGGGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGGTTC
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 467899999997 79999999999999976899999997765443
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.012 Score=51.96 Aligned_cols=66 Identities=17% Similarity=0.171 Sum_probs=51.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
+++++|.|+ ||.|++++..|++.| ..|.+++|+.++.+++. ++. +... +..+. ...
T Consensus 118 ~k~vlvlGa-GGaaraia~~L~~~G-~~v~V~nRt~~ka~~la-~~~-----~~~~--~~~~l--------------~~~ 173 (269)
T 3phh_A 118 YQNALILGA-GGSAKALACELKKQG-LQVSVLNRSSRGLDFFQ-RLG-----CDCF--MEPPK--------------SAF 173 (269)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSSCTTHHHHH-HHT-----CEEE--SSCCS--------------SCC
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHH-HCC-----CeEe--cHHHh--------------ccC
Confidence 789999997 999999999999999 69999999998888776 553 2222 22221 158
Q ss_pred cEEEEccccC
Q 018819 166 DVLVCNAAVY 175 (350)
Q Consensus 166 d~lv~~Ag~~ 175 (350)
|+|||+....
T Consensus 174 DiVInaTp~G 183 (269)
T 3phh_A 174 DLIINATSAS 183 (269)
T ss_dssp SEEEECCTTC
T ss_pred CEEEEcccCC
Confidence 9999997653
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0078 Score=55.91 Aligned_cols=81 Identities=19% Similarity=0.223 Sum_probs=54.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCC--CHHHHHHHHHHHHHcC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA--SLDSVRQFVDTFRRSG 162 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs--~~~~v~~~~~~~~~~~ 162 (350)
.|.++||+| +|++|...++.+...|+.+|+.+++++++.+.+. ++ |.. .+ .|.. +.+++.+.+.++.. .
T Consensus 195 ~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~-~l---Ga~-~v--i~~~~~~~~~~~~~v~~~~~-g 265 (380)
T 1vj0_A 195 AGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE-EI---GAD-LT--LNRRETSVEERRKAIMDITH-G 265 (380)
T ss_dssp BTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH-HT---TCS-EE--EETTTSCHHHHHHHHHHHTT-T
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH-Hc---CCc-EE--EeccccCcchHHHHHHHHhC-C
Confidence 478999999 8999999999888899558999999877665443 33 332 22 2433 23444333333321 1
Q ss_pred CCCcEEEEcccc
Q 018819 163 RPLDVLVCNAAV 174 (350)
Q Consensus 163 g~id~lv~~Ag~ 174 (350)
.++|++|.++|.
T Consensus 266 ~g~Dvvid~~g~ 277 (380)
T 1vj0_A 266 RGADFILEATGD 277 (380)
T ss_dssp SCEEEEEECSSC
T ss_pred CCCcEEEECCCC
Confidence 269999999984
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.016 Score=53.22 Aligned_cols=80 Identities=15% Similarity=0.195 Sum_probs=53.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCC--CHHHHHHHHHHHHHcC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA--SLDSVRQFVDTFRRSG 162 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs--~~~~v~~~~~~~~~~~ 162 (350)
.|.++||+|+ |++|...++.+...|+.+|+.++++.++.+.+ +++ |.. .+ .|.. +.++..+.+.+...
T Consensus 171 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a-~~l---Ga~-~v--i~~~~~~~~~~~~~i~~~~~-- 240 (356)
T 1pl8_A 171 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKA-KEI---GAD-LV--LQISKESPQEIARKVEGQLG-- 240 (356)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH-HHT---TCS-EE--EECSSCCHHHHHHHHHHHHT--
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHh---CCC-EE--EcCcccccchHHHHHHHHhC--
Confidence 5789999996 89999999988889976899999887665543 333 333 22 3444 23333333333322
Q ss_pred CCCcEEEEcccc
Q 018819 163 RPLDVLVCNAAV 174 (350)
Q Consensus 163 g~id~lv~~Ag~ 174 (350)
+++|++|.++|.
T Consensus 241 ~g~D~vid~~g~ 252 (356)
T 1pl8_A 241 CKPEVTIECTGA 252 (356)
T ss_dssp SCCSEEEECSCC
T ss_pred CCCCEEEECCCC
Confidence 479999999874
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0037 Score=57.70 Aligned_cols=78 Identities=18% Similarity=0.191 Sum_probs=54.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.|+++||+| +|++|...++.+...|+ +|++++++.++.+.+ +++ |... . .| .+.+++.+.+.++.. ..+
T Consensus 189 ~g~~VlV~G-~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~-~~l---Ga~~-v--i~-~~~~~~~~~v~~~~~-g~g 257 (363)
T 3uog_A 189 AGDRVVVQG-TGGVALFGLQIAKATGA-EVIVTSSSREKLDRA-FAL---GADH-G--IN-RLEEDWVERVYALTG-DRG 257 (363)
T ss_dssp TTCEEEEES-SBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH-HHH---TCSE-E--EE-TTTSCHHHHHHHHHT-TCC
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCC-EEEEEecCchhHHHH-HHc---CCCE-E--Ec-CCcccHHHHHHHHhC-CCC
Confidence 578999999 89999999999999997 899999987776553 334 3322 2 24 332333333333332 236
Q ss_pred CcEEEEccc
Q 018819 165 LDVLVCNAA 173 (350)
Q Consensus 165 id~lv~~Ag 173 (350)
+|++|.++|
T Consensus 258 ~D~vid~~g 266 (363)
T 3uog_A 258 ADHILEIAG 266 (363)
T ss_dssp EEEEEEETT
T ss_pred ceEEEECCC
Confidence 999999998
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0023 Score=58.21 Aligned_cols=75 Identities=15% Similarity=0.187 Sum_probs=48.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
++||+|++|++|...++.+...|+ +|+.++++.++.+.+ +++ |... . +|..+.+ .+.+..+ ..+++|+
T Consensus 152 ~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~-~~l---Ga~~-~--i~~~~~~--~~~~~~~--~~~~~d~ 219 (328)
T 1xa0_A 152 PVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYL-RVL---GAKE-V--LAREDVM--AERIRPL--DKQRWAA 219 (328)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHH-HHT---TCSE-E--EECC-----------C--CSCCEEE
T ss_pred eEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH-HHc---CCcE-E--EecCCcH--HHHHHHh--cCCcccE
Confidence 799999999999999999999997 788888887666544 333 3332 1 3554432 2222222 1247999
Q ss_pred EEEcccc
Q 018819 168 LVCNAAV 174 (350)
Q Consensus 168 lv~~Ag~ 174 (350)
+|+++|.
T Consensus 220 vid~~g~ 226 (328)
T 1xa0_A 220 AVDPVGG 226 (328)
T ss_dssp EEECSTT
T ss_pred EEECCcH
Confidence 9999884
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0038 Score=57.82 Aligned_cols=80 Identities=15% Similarity=0.138 Sum_probs=54.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCC-HHHHHHHHHHHHHcCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS-LDSVRQFVDTFRRSGR 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~-~~~v~~~~~~~~~~~g 163 (350)
.|+++||+|+ |++|...++.+...|+.+|+.+++++++.+.+. ++ |... + +|..+ .+++.+.+.++.. +
T Consensus 192 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~-~l---Ga~~-v--i~~~~~~~~~~~~~~~~~~--~ 261 (374)
T 1cdo_A 192 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK-VF---GATD-F--VNPNDHSEPISQVLSKMTN--G 261 (374)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HT---TCCE-E--ECGGGCSSCHHHHHHHHHT--S
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-Hh---CCce-E--EeccccchhHHHHHHHHhC--C
Confidence 5789999995 999999999888899768999988877766443 33 3321 2 34443 1233444444433 4
Q ss_pred CCcEEEEcccc
Q 018819 164 PLDVLVCNAAV 174 (350)
Q Consensus 164 ~id~lv~~Ag~ 174 (350)
++|++|+++|.
T Consensus 262 g~D~vid~~g~ 272 (374)
T 1cdo_A 262 GVDFSLECVGN 272 (374)
T ss_dssp CBSEEEECSCC
T ss_pred CCCEEEECCCC
Confidence 79999999885
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.02 Score=52.38 Aligned_cols=81 Identities=19% Similarity=0.258 Sum_probs=52.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCC-HHHHHHHHHHHHH-cC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS-LDSVRQFVDTFRR-SG 162 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~-~~~v~~~~~~~~~-~~ 162 (350)
.++++||+|+ |++|...++.+...|+ +|++++++.++.+.+ +++ |... . .|..+ .+..+++.+.... ..
T Consensus 168 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~-~~l---Ga~~-~--~~~~~~~~~~~~i~~~~~~~~g 238 (352)
T 1e3j_A 168 LGTTVLVIGA-GPIGLVSVLAAKAYGA-FVVCTARSPRRLEVA-KNC---GADV-T--LVVDPAKEEESSIIERIRSAIG 238 (352)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH-HHT---TCSE-E--EECCTTTSCHHHHHHHHHHHSS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHH-HHh---CCCE-E--EcCcccccHHHHHHHHhccccC
Confidence 5789999997 8999999998888997 688898887766544 333 3332 2 34443 2222222222210 12
Q ss_pred CCCcEEEEcccc
Q 018819 163 RPLDVLVCNAAV 174 (350)
Q Consensus 163 g~id~lv~~Ag~ 174 (350)
+++|++|+++|.
T Consensus 239 ~g~D~vid~~g~ 250 (352)
T 1e3j_A 239 DLPNVTIDCSGN 250 (352)
T ss_dssp SCCSEEEECSCC
T ss_pred CCCCEEEECCCC
Confidence 469999999874
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0033 Score=57.59 Aligned_cols=106 Identities=15% Similarity=0.062 Sum_probs=62.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCC-cEEEEEecChhHHHHHHHHhccC---CCceEEEEccCCCHHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMA---KENYTIMHLDLASLDSVRQFVDTF 158 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga-~~Vi~~~r~~~~~~~~~~~l~~~---~~~v~~~~~Dvs~~~~v~~~~~~~ 158 (350)
.+.++.+.|+|++|.+|..+|..++..|. ..|++++.+.++++....++... ..++.+ . +|. .+.+
T Consensus 5 ~~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~-t---~d~---~~al--- 74 (343)
T 3fi9_A 5 YLTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF-T---SDI---KEAL--- 74 (343)
T ss_dssp CSCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEE-E---SCH---HHHH---
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEE-c---CCH---HHHh---
Confidence 34667899999999999999999999983 47999999877665544444321 112221 1 121 2222
Q ss_pred HHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHH
Q 018819 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLD 209 (350)
Q Consensus 159 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~ 209 (350)
..-|++|.+||.... + .++. ...+..|+.-...+.+.+..
T Consensus 75 ----~dADvVvitaG~p~k--p--G~~R---~dLl~~N~~I~~~i~~~i~~ 114 (343)
T 3fi9_A 75 ----TDAKYIVSSGGAPRK--E--GMTR---EDLLKGNAEIAAQLGKDIKS 114 (343)
T ss_dssp ----TTEEEEEECCC-----------CH---HHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCCEEEEccCCCCC--C--CCCH---HHHHHHHHHHHHHHHHHHHH
Confidence 268999999997432 1 2233 23456666555445444433
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0078 Score=54.45 Aligned_cols=114 Identities=17% Similarity=0.118 Sum_probs=66.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHcC-CcEEEEEecChhHHHHHHHHhccCCC--ceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 88 SVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAKE--NYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~G-a~~Vi~~~r~~~~~~~~~~~l~~~~~--~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.+.|+|++|.+|..++..|+..| ...|++++++. .+....++..... ++..... .++.++.++ .
T Consensus 2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~--~~~~a~dL~~~~~~~~l~~~~~----t~d~~~a~~-------~ 68 (314)
T 1mld_A 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH--TPGVAADLSHIETRATVKGYLG----PEQLPDCLK-------G 68 (314)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS--HHHHHHHHTTSSSSCEEEEEES----GGGHHHHHT-------T
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc--cHHHHHHHhccCcCceEEEecC----CCCHHHHhC-------C
Confidence 58999999999999999999887 24799999986 2333334433211 1222110 112333222 6
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEec
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS 226 (350)
.|++|+.+|..... ..+..+ .+..|+.....+.+.+..+- +.++||++|-
T Consensus 69 aDvVvi~ag~~~~~----g~~r~d---l~~~n~~i~~~i~~~i~~~~-----p~a~viv~sN 118 (314)
T 1mld_A 69 CDVVVIPAGVPRKP----GMTRDD---LFNTNATIVATLTAACAQHC-----PDAMICIISN 118 (314)
T ss_dssp CSEEEECCSCCCCT----TCCGGG---GHHHHHHHHHHHHHHHHHHC-----TTSEEEECSS
T ss_pred CCEEEECCCcCCCC----CCcHHH---HHHHHHHHHHHHHHHHHhhC-----CCeEEEEECC
Confidence 89999999985322 122222 35566665555555544432 1356666543
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0066 Score=55.27 Aligned_cols=37 Identities=24% Similarity=0.359 Sum_probs=33.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
.+++++++|.|+ ||+|.++++.|+..|..++.+++++
T Consensus 31 kL~~~~VlIvGa-GGlGs~va~~La~aGVg~ItlvD~D 67 (340)
T 3rui_A 31 IIKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNG 67 (340)
T ss_dssp HHHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred HHhCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEecCC
Confidence 467889999997 8999999999999998899998774
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.007 Score=55.87 Aligned_cols=78 Identities=14% Similarity=0.187 Sum_probs=51.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHH-cCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAE-TGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~-~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
.|.++||+||+|++|...++.+.. .|+ +|+.++++.++.+.+ +++ |... + .|..+ ++.+.+.++ ..+
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~-~Vi~~~~~~~~~~~~-~~l---Gad~-v--i~~~~--~~~~~v~~~--~~~ 238 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDL-TVIATASRPETQEWV-KSL---GAHH-V--IDHSK--PLAAEVAAL--GLG 238 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCS-EEEEECSSHHHHHHH-HHT---TCSE-E--ECTTS--CHHHHHHTT--CSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHH-HHc---CCCE-E--EeCCC--CHHHHHHHh--cCC
Confidence 577999999999999988876655 475 999999987766544 333 3332 1 34433 222222222 235
Q ss_pred CCcEEEEcccc
Q 018819 164 PLDVLVCNAAV 174 (350)
Q Consensus 164 ~id~lv~~Ag~ 174 (350)
++|++|.++|.
T Consensus 239 g~Dvvid~~g~ 249 (363)
T 4dvj_A 239 APAFVFSTTHT 249 (363)
T ss_dssp CEEEEEECSCH
T ss_pred CceEEEECCCc
Confidence 79999999874
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0035 Score=58.12 Aligned_cols=81 Identities=23% Similarity=0.249 Sum_probs=53.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHH-HcCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR-RSGR 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~-~~~g 163 (350)
.|.++||+|+ |++|...++.+...|+.+|+.++++.++.+ ..+++. ... ..|.++.+..+. +.+.. ...+
T Consensus 182 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~-~a~~lG---a~~---vi~~~~~~~~~~-i~~~~~~~~g 252 (370)
T 4ej6_A 182 AGSTVAILGG-GVIGLLTVQLARLAGATTVILSTRQATKRR-LAEEVG---ATA---TVDPSAGDVVEA-IAGPVGLVPG 252 (370)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHH-HHHHHT---CSE---EECTTSSCHHHH-HHSTTSSSTT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHH-HHHHcC---CCE---EECCCCcCHHHH-HHhhhhccCC
Confidence 5789999998 899999999888999778998888876655 334443 221 235554332222 22100 1124
Q ss_pred CCcEEEEcccc
Q 018819 164 PLDVLVCNAAV 174 (350)
Q Consensus 164 ~id~lv~~Ag~ 174 (350)
++|++|.++|.
T Consensus 253 g~Dvvid~~G~ 263 (370)
T 4ej6_A 253 GVDVVIECAGV 263 (370)
T ss_dssp CEEEEEECSCC
T ss_pred CCCEEEECCCC
Confidence 79999999874
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0076 Score=54.99 Aligned_cols=77 Identities=16% Similarity=0.122 Sum_probs=53.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.|+++||+|+ |++|...++.+...|+ +|+.++++.++.+.+ +++ |.... .|..+.+..+.+.+ ..++
T Consensus 166 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~-~~l---Ga~~~---i~~~~~~~~~~~~~----~~g~ 232 (340)
T 3s2e_A 166 PGQWVVISGI-GGLGHVAVQYARAMGL-RVAAVDIDDAKLNLA-RRL---GAEVA---VNARDTDPAAWLQK----EIGG 232 (340)
T ss_dssp TTSEEEEECC-STTHHHHHHHHHHTTC-EEEEEESCHHHHHHH-HHT---TCSEE---EETTTSCHHHHHHH----HHSS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH-HHc---CCCEE---EeCCCcCHHHHHHH----hCCC
Confidence 6789999997 8999999999999997 999999987776543 333 33322 35444333333322 2247
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|.+|.++|.
T Consensus 233 ~d~vid~~g~ 242 (340)
T 3s2e_A 233 AHGVLVTAVS 242 (340)
T ss_dssp EEEEEESSCC
T ss_pred CCEEEEeCCC
Confidence 9999999873
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.003 Score=58.71 Aligned_cols=80 Identities=21% Similarity=0.142 Sum_probs=54.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCC-HHHHHHHHHHHHHcCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS-LDSVRQFVDTFRRSGR 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~-~~~v~~~~~~~~~~~g 163 (350)
.+.++||+|+ |++|...++.+...|+.+|+.++++.++.+.+ +++ |... ..|..+ .+++.+.+.++.. +
T Consensus 193 ~g~~VlV~Ga-G~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a-~~l---Ga~~---vi~~~~~~~~~~~~i~~~~~--g 262 (378)
T 3uko_A 193 PGSNVAIFGL-GTVGLAVAEGAKTAGASRIIGIDIDSKKYETA-KKF---GVNE---FVNPKDHDKPIQEVIVDLTD--G 262 (378)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHHTCSCEEEECSCTTHHHHH-HTT---TCCE---EECGGGCSSCHHHHHHHHTT--S
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHc---CCcE---EEccccCchhHHHHHHHhcC--C
Confidence 5789999998 99999999998889976899999888776533 333 3332 234332 1233333333322 3
Q ss_pred CCcEEEEcccc
Q 018819 164 PLDVLVCNAAV 174 (350)
Q Consensus 164 ~id~lv~~Ag~ 174 (350)
++|++|.++|.
T Consensus 263 g~D~vid~~g~ 273 (378)
T 3uko_A 263 GVDYSFECIGN 273 (378)
T ss_dssp CBSEEEECSCC
T ss_pred CCCEEEECCCC
Confidence 79999999884
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0048 Score=57.14 Aligned_cols=80 Identities=14% Similarity=0.138 Sum_probs=54.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCC-HHHHHHHHHHHHHcCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS-LDSVRQFVDTFRRSGR 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~-~~~v~~~~~~~~~~~g 163 (350)
.++++||+|+ |++|..+++.+...|+.+|+.++++.++.+.+ +++ |... + .|..+ .+++.+.+.++.. +
T Consensus 191 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~-~~l---Ga~~-v--i~~~~~~~~~~~~~~~~~~--~ 260 (374)
T 2jhf_A 191 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKA-KEV---GATE-C--VNPQDYKKPIQEVLTEMSN--G 260 (374)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HHT---TCSE-E--ECGGGCSSCHHHHHHHHTT--S
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHh---CCce-E--ecccccchhHHHHHHHHhC--C
Confidence 5789999995 99999999998889976899999887776554 333 3321 2 34432 1223333333322 4
Q ss_pred CCcEEEEcccc
Q 018819 164 PLDVLVCNAAV 174 (350)
Q Consensus 164 ~id~lv~~Ag~ 174 (350)
++|++|.++|.
T Consensus 261 g~D~vid~~g~ 271 (374)
T 2jhf_A 261 GVDFSFEVIGR 271 (374)
T ss_dssp CBSEEEECSCC
T ss_pred CCcEEEECCCC
Confidence 79999999885
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0075 Score=55.49 Aligned_cols=75 Identities=17% Similarity=0.139 Sum_probs=53.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.|.++||+|+ |++|...++.+...|+ +|+.++++.++.+.+.+++ |... + .|..+.+.+. +..++
T Consensus 180 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~~~l---Ga~~-v--i~~~~~~~~~-------~~~~g 244 (357)
T 2cf5_A 180 PGLRGGILGL-GGVGHMGVKIAKAMGH-HVTVISSSNKKREEALQDL---GADD-Y--VIGSDQAKMS-------ELADS 244 (357)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHHTTS---CCSC-E--EETTCHHHHH-------HSTTT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHc---CCce-e--eccccHHHHH-------HhcCC
Confidence 6789999995 9999999998888997 8999998877665544333 3322 1 3455543332 22247
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|.++|.
T Consensus 245 ~D~vid~~g~ 254 (357)
T 2cf5_A 245 LDYVIDTVPV 254 (357)
T ss_dssp EEEEEECCCS
T ss_pred CCEEEECCCC
Confidence 9999999985
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0097 Score=55.11 Aligned_cols=80 Identities=16% Similarity=0.107 Sum_probs=54.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCC-HHHHHHHHHHHHHcCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS-LDSVRQFVDTFRRSGR 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~-~~~v~~~~~~~~~~~g 163 (350)
.|.++||+|+ |++|...++.+...|+.+|+.+++++++.+.+ +++ |... + .|..+ .+++.+.+.++.. +
T Consensus 195 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a-~~l---Ga~~-v--i~~~~~~~~~~~~v~~~~~--~ 264 (376)
T 1e3i_A 195 PGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPKA-KAL---GATD-C--LNPRELDKPVQDVITELTA--G 264 (376)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HHT---TCSE-E--ECGGGCSSCHHHHHHHHHT--S
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHh---CCcE-E--EccccccchHHHHHHHHhC--C
Confidence 5789999996 99999999988889976899998887776544 333 3321 2 34432 1223333333333 4
Q ss_pred CCcEEEEcccc
Q 018819 164 PLDVLVCNAAV 174 (350)
Q Consensus 164 ~id~lv~~Ag~ 174 (350)
++|++|.++|.
T Consensus 265 g~Dvvid~~G~ 275 (376)
T 1e3i_A 265 GVDYSLDCAGT 275 (376)
T ss_dssp CBSEEEESSCC
T ss_pred CccEEEECCCC
Confidence 79999999885
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.014 Score=53.75 Aligned_cols=78 Identities=21% Similarity=0.154 Sum_probs=53.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHc-CCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~-Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
.|.++||+|+ |++|...++.+... |+ +|+.++++.++.+.+. ++ |... + .|..+. +.+.+.++.. ..
T Consensus 186 ~g~~VlV~Ga-G~vG~~avqlak~~~Ga-~Vi~~~~~~~~~~~~~-~l---Ga~~-v--i~~~~~--~~~~v~~~~~-g~ 253 (359)
T 1h2b_A 186 PGAYVAIVGV-GGLGHIAVQLLKVMTPA-TVIALDVKEEKLKLAE-RL---GADH-V--VDARRD--PVKQVMELTR-GR 253 (359)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCC-EEEEEESSHHHHHHHH-HT---TCSE-E--EETTSC--HHHHHHHHTT-TC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHH-Hh---CCCE-E--Eeccch--HHHHHHHHhC-CC
Confidence 5789999999 89999999988888 97 8999999877665443 33 3322 2 355543 3333333322 22
Q ss_pred CCcEEEEcccc
Q 018819 164 PLDVLVCNAAV 174 (350)
Q Consensus 164 ~id~lv~~Ag~ 174 (350)
++|++|.++|.
T Consensus 254 g~Dvvid~~G~ 264 (359)
T 1h2b_A 254 GVNVAMDFVGS 264 (359)
T ss_dssp CEEEEEESSCC
T ss_pred CCcEEEECCCC
Confidence 69999999884
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.40 E-value=0.011 Score=54.79 Aligned_cols=74 Identities=19% Similarity=0.234 Sum_probs=53.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.|.++||+|+ |++|...++.+...|+ +|+.++++.++.+.+. ++ |... ..|..+.+.+++ +. ++
T Consensus 194 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~-~l---Ga~~---vi~~~~~~~~~~----~~---~g 257 (369)
T 1uuf_A 194 PGKKVGVVGI-GGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAK-AL---GADE---VVNSRNADEMAA----HL---KS 257 (369)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHH-HH---TCSE---EEETTCHHHHHT----TT---TC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH-Hc---CCcE---EeccccHHHHHH----hh---cC
Confidence 5789999997 8999999998888997 7999998877766543 34 3221 245666543322 21 47
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|.++|.
T Consensus 258 ~Dvvid~~g~ 267 (369)
T 1uuf_A 258 FDFILNTVAA 267 (369)
T ss_dssp EEEEEECCSS
T ss_pred CCEEEECCCC
Confidence 9999999985
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0062 Score=52.40 Aligned_cols=71 Identities=14% Similarity=0.186 Sum_probs=52.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
.+.++|.|+ |.+|..+++.|.+.| . |++++++.+..+... . .+.++.+|.+|++.++++ .....
T Consensus 9 ~~~viI~G~-G~~G~~la~~L~~~g-~-v~vid~~~~~~~~~~-----~--~~~~i~gd~~~~~~l~~a------~i~~a 72 (234)
T 2aef_A 9 SRHVVICGW-SESTLECLRELRGSE-V-FVLAEDENVRKKVLR-----S--GANFVHGDPTRVSDLEKA------NVRGA 72 (234)
T ss_dssp -CEEEEESC-CHHHHHHHHHSTTSE-E-EEEESCGGGHHHHHH-----T--TCEEEESCTTCHHHHHHT------TCTTC
T ss_pred CCEEEEECC-ChHHHHHHHHHHhCC-e-EEEEECCHHHHHHHh-----c--CCeEEEcCCCCHHHHHhc------Ccchh
Confidence 347899997 899999999999999 6 888899877665443 1 367888999998766543 12357
Q ss_pred cEEEEcc
Q 018819 166 DVLVCNA 172 (350)
Q Consensus 166 d~lv~~A 172 (350)
|.+|.+.
T Consensus 73 d~vi~~~ 79 (234)
T 2aef_A 73 RAVIVDL 79 (234)
T ss_dssp SEEEECC
T ss_pred cEEEEcC
Confidence 7777664
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.004 Score=55.39 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=40.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK 129 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~ 129 (350)
.+++++++|+|+ ||.|++++..|.+.|+.+|.+++|+.++.+++.+
T Consensus 119 ~~~~k~vlvlGa-GGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~ 164 (282)
T 3fbt_A 119 EIKNNICVVLGS-GGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYG 164 (282)
T ss_dssp CCTTSEEEEECS-STTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCT
T ss_pred CccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 467899999997 7999999999999998799999999887766644
|
| >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.012 Score=54.61 Aligned_cols=80 Identities=13% Similarity=0.115 Sum_probs=53.9
Q ss_pred CCCEEEEEc-CCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 85 RKGSVIITG-ASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 85 ~~~~~lItG-gs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
.+.++||.| |+|++|...++.+...|+ +|+.++++.++.+.+. ++ |... + .|..+.+-.+.+.+.... .
T Consensus 170 ~g~~vlV~gag~G~vG~~a~q~a~~~Ga-~Vi~~~~~~~~~~~~~-~l---Ga~~-~--~~~~~~~~~~~v~~~t~~--~ 239 (379)
T 3iup_A 170 EGHSALVHTAAASNLGQMLNQICLKDGI-KLVNIVRKQEQADLLK-AQ---GAVH-V--CNAASPTFMQDLTEALVS--T 239 (379)
T ss_dssp TTCSCEEESSTTSHHHHHHHHHHHHHTC-CEEEEESSHHHHHHHH-HT---TCSC-E--EETTSTTHHHHHHHHHHH--H
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH-hC---CCcE-E--EeCCChHHHHHHHHHhcC--C
Confidence 678899997 899999999999888997 8998988877765443 33 3332 1 344443322332222211 2
Q ss_pred CCcEEEEcccc
Q 018819 164 PLDVLVCNAAV 174 (350)
Q Consensus 164 ~id~lv~~Ag~ 174 (350)
++|++|.+.|.
T Consensus 240 g~d~v~d~~g~ 250 (379)
T 3iup_A 240 GATIAFDATGG 250 (379)
T ss_dssp CCCEEEESCEE
T ss_pred CceEEEECCCc
Confidence 69999999986
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.016 Score=54.33 Aligned_cols=80 Identities=20% Similarity=0.293 Sum_probs=53.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.|.++||+|+ |++|...++.+...|+.+|+.++++.++.+.+ +++ |... + .|..+.+..+. +.++.. ..+
T Consensus 213 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~-~~l---Ga~~-v--i~~~~~~~~~~-i~~~t~-g~g 282 (404)
T 3ip1_A 213 PGDNVVILGG-GPIGLAAVAILKHAGASKVILSEPSEVRRNLA-KEL---GADH-V--IDPTKENFVEA-VLDYTN-GLG 282 (404)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHHHH-HHH---TCSE-E--ECTTTSCHHHH-HHHHTT-TCC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHc---CCCE-E--EcCCCCCHHHH-HHHHhC-CCC
Confidence 5789999998 89999999988889976899998887766543 344 3322 2 34444332222 222211 236
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|.++|.
T Consensus 283 ~D~vid~~g~ 292 (404)
T 3ip1_A 283 AKLFLEATGV 292 (404)
T ss_dssp CSEEEECSSC
T ss_pred CCEEEECCCC
Confidence 9999999885
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.006 Score=56.43 Aligned_cols=80 Identities=15% Similarity=0.081 Sum_probs=54.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCC-HHHHHHHHHHHHHcCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS-LDSVRQFVDTFRRSGR 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~-~~~v~~~~~~~~~~~g 163 (350)
.|.++||+|+ |++|...++.+...|+.+|+.++++.++.+.+. ++ |... + .|..+ .+++.+.+.++.. +
T Consensus 190 ~g~~VlV~Ga-G~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~-~l---Ga~~-v--i~~~~~~~~~~~~v~~~~~--~ 259 (373)
T 2fzw_A 190 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFARAK-EF---GATE-C--INPQDFSKPIQEVLIEMTD--G 259 (373)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH-HH---TCSE-E--ECGGGCSSCHHHHHHHHTT--S
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-Hc---CCce-E--eccccccccHHHHHHHHhC--C
Confidence 5789999996 999999999888899768999988877765543 34 2221 2 34432 1223333333322 4
Q ss_pred CCcEEEEcccc
Q 018819 164 PLDVLVCNAAV 174 (350)
Q Consensus 164 ~id~lv~~Ag~ 174 (350)
++|++|.++|.
T Consensus 260 g~D~vid~~g~ 270 (373)
T 2fzw_A 260 GVDYSFECIGN 270 (373)
T ss_dssp CBSEEEECSCC
T ss_pred CCCEEEECCCc
Confidence 79999999874
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0065 Score=55.90 Aligned_cols=75 Identities=19% Similarity=0.176 Sum_probs=51.3
Q ss_pred CCEEEEEcCCCchHHHH-HHHH-HHcCCcEEEEEecChh---HHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 86 KGSVIITGASSGLGLAT-AKAL-AETGKWHIIMACRDFL---KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~i-a~~l-a~~Ga~~Vi~~~r~~~---~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
+.++||+|+ |++|... ++.+ ...|+.+|+.++++.+ +.+.+ +++ |. ..+ |..+.+ +.+ +.++
T Consensus 173 ~~~VlV~Ga-G~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~-~~l---Ga--~~v--~~~~~~-~~~-i~~~-- 239 (357)
T 2b5w_A 173 PSSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDII-EEL---DA--TYV--DSRQTP-VED-VPDV-- 239 (357)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHH-HHT---TC--EEE--ETTTSC-GGG-HHHH--
T ss_pred CCEEEEECC-CHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHH-HHc---CC--ccc--CCCccC-HHH-HHHh--
Confidence 379999999 9999999 8777 6789855999998876 65543 333 32 233 555432 333 4444
Q ss_pred cCCCCcEEEEcccc
Q 018819 161 SGRPLDVLVCNAAV 174 (350)
Q Consensus 161 ~~g~id~lv~~Ag~ 174 (350)
.+++|++|.++|.
T Consensus 240 -~gg~Dvvid~~g~ 252 (357)
T 2b5w_A 240 -YEQMDFIYEATGF 252 (357)
T ss_dssp -SCCEEEEEECSCC
T ss_pred -CCCCCEEEECCCC
Confidence 2379999999884
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0029 Score=57.74 Aligned_cols=117 Identities=11% Similarity=0.019 Sum_probs=67.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC-cE-----EEEEecCh--hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHH
Q 018819 88 SVIITGASSGLGLATAKALAETGK-WH-----IIMACRDF--LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga-~~-----Vi~~~r~~--~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
.++||||+|.||..++..|+..|. .. |++++++. +..+-...++........ ....+++ +..+
T Consensus 5 kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~-~~~~~~~--~~~~------ 75 (333)
T 5mdh_A 5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLL-KDVIATD--KEEI------ 75 (333)
T ss_dssp EEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTE-EEEEEES--CHHH------
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhccc-CCEEEcC--CcHH------
Confidence 689999999999999999998773 23 88888864 344444444432111111 1111111 1111
Q ss_pred HcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCC-eEEEEec
Q 018819 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSK-RLIIVGS 226 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g-~iV~vSS 226 (350)
.+...|++|+.||.... + .++. ...++.|+.....+.+.+..+-. .+ +|+++|-
T Consensus 76 -~~~daDvVvitAg~prk--p--G~tR---~dll~~N~~i~~~i~~~i~~~~~-----~~~~vivvsN 130 (333)
T 5mdh_A 76 -AFKDLDVAILVGSMPRR--D--GMER---KDLLKANVKIFKCQGAALDKYAK-----KSVKVIVVGN 130 (333)
T ss_dssp -HTTTCSEEEECCSCCCC--T--TCCT---TTTHHHHHHHHHHHHHHHHHHSC-----TTCEEEECSS
T ss_pred -HhCCCCEEEEeCCCCCC--C--CCCH---HHHHHHHHHHHHHHHHHHHHhCC-----CCeEEEEcCC
Confidence 12368999999997532 1 1222 23566777776666666544321 24 4666654
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.022 Score=53.35 Aligned_cols=43 Identities=21% Similarity=0.159 Sum_probs=37.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA 127 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~ 127 (350)
.+.+++++|+|+ |.+|+.+++.+...|+ +|++++++....+..
T Consensus 169 ~l~g~~V~ViGa-G~iG~~aa~~a~~~Ga-~V~v~D~~~~~~~~~ 211 (401)
T 1x13_A 169 KVPPAKVMVIGA-GVAGLAAIGAANSLGA-IVRAFDTRPEVKEQV 211 (401)
T ss_dssp EECCCEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSCGGGHHHH
T ss_pred CcCCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence 367899999996 8999999999999997 899999998776654
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0028 Score=55.47 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=36.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHH
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA 127 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~ 127 (350)
+++ +++|.|+ ||.|++++..|++.|+.+|++++|+.++.+++
T Consensus 107 ~~~-~vliiGa-Gg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~l 148 (253)
T 3u62_A 107 VKE-PVVVVGA-GGAARAVIYALLQMGVKDIWVVNRTIERAKAL 148 (253)
T ss_dssp CCS-SEEEECC-SHHHHHHHHHHHHTTCCCEEEEESCHHHHHTC
T ss_pred CCC-eEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence 467 8999987 89999999999999976899999998765544
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.049 Score=49.40 Aligned_cols=115 Identities=14% Similarity=-0.018 Sum_probs=69.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC-cEEEEEecChhHHHHHHHHhccC----CCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 86 KGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMA----KENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga-~~Vi~~~r~~~~~~~~~~~l~~~----~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
.+.+.|+|+ |.+|..++..|+..|. ..|++++++.++++....++... +..+.....| . +
T Consensus 5 ~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~---~-----------~ 69 (326)
T 3pqe_A 5 VNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGT---Y-----------E 69 (326)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEEC---G-----------G
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCc---H-----------H
Confidence 457899996 9999999999999883 38999999887766544444321 1233333222 1 1
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEecc
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 227 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~ 227 (350)
.+..-|++|.++|.... + ..+..+ .++.|..-...+.+. +.+.. +.+.++++|-.
T Consensus 70 a~~~aDvVvi~ag~p~k--p--G~~R~d---L~~~N~~Iv~~i~~~----I~~~~-p~a~vlvvtNP 124 (326)
T 3pqe_A 70 DCKDADIVCICAGANQK--P--GETRLE---LVEKNLKIFKGIVSE----VMASG-FDGIFLVATNP 124 (326)
T ss_dssp GGTTCSEEEECCSCCCC--T--TCCHHH---HHHHHHHHHHHHHHH----HHHTT-CCSEEEECSSS
T ss_pred HhCCCCEEEEecccCCC--C--CccHHH---HHHHHHHHHHHHHHH----HHHhc-CCeEEEEcCCh
Confidence 12368999999997432 1 234333 355665444444444 43332 24677776643
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.013 Score=54.78 Aligned_cols=80 Identities=20% Similarity=0.198 Sum_probs=54.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.|.++||+|+ |++|...++.+...|+.+|+.++++.++.+.+ +++ |.. . +|.++.+.+.+.+.++.. ..+
T Consensus 185 ~g~~VlV~Ga-G~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a-~~l---Ga~--~--i~~~~~~~~~~~v~~~t~-g~g 254 (398)
T 1kol_A 185 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHA-KAQ---GFE--I--ADLSLDTPLHEQIAALLG-EPE 254 (398)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH-HHT---TCE--E--EETTSSSCHHHHHHHHHS-SSC
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHH-HHc---CCc--E--EccCCcchHHHHHHHHhC-CCC
Confidence 5789999995 99999999888889976899998887776544 333 432 2 354443322222332221 236
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|.++|.
T Consensus 255 ~Dvvid~~G~ 264 (398)
T 1kol_A 255 VDCAVDAVGF 264 (398)
T ss_dssp EEEEEECCCT
T ss_pred CCEEEECCCC
Confidence 9999999986
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.028 Score=51.27 Aligned_cols=77 Identities=16% Similarity=0.245 Sum_probs=52.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHc--CCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 85 RKGSVIITGASSGLGLATAKALAET--GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~--Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.|.++||+|+ |++|...++.+... |+ +|+.++++.++.+.+. ++ |... + .|..+. ..+++++.+ .
T Consensus 170 ~g~~VlV~Ga-G~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~-~l---Ga~~-v--i~~~~~---~~~~~~~~~-g 236 (344)
T 2h6e_A 170 AEPVVIVNGI-GGLAVYTIQILKALMKNI-TIVGISRSKKHRDFAL-EL---GADY-V--SEMKDA---ESLINKLTD-G 236 (344)
T ss_dssp SSCEEEEECC-SHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHH-HH---TCSE-E--ECHHHH---HHHHHHHHT-T
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHH-Hh---CCCE-E--eccccc---hHHHHHhhc-C
Confidence 6889999999 89999999988888 97 7999998877765443 34 3221 1 233220 123334433 2
Q ss_pred CCCcEEEEcccc
Q 018819 163 RPLDVLVCNAAV 174 (350)
Q Consensus 163 g~id~lv~~Ag~ 174 (350)
.++|++|.++|.
T Consensus 237 ~g~D~vid~~g~ 248 (344)
T 2h6e_A 237 LGASIAIDLVGT 248 (344)
T ss_dssp CCEEEEEESSCC
T ss_pred CCccEEEECCCC
Confidence 379999999884
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0047 Score=56.85 Aligned_cols=35 Identities=34% Similarity=0.405 Sum_probs=28.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
.|.++||+||+|++|...++.+...|+ +++.+.+.
T Consensus 167 ~g~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~ 201 (357)
T 1zsy_A 167 PGDSVIQNASNSGVGQAVIQIAAALGL-RTINVVRD 201 (357)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEECC
T ss_pred CCCEEEEeCCcCHHHHHHHHHHHHcCC-EEEEEecC
Confidence 578999999999999999988888897 55555443
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.012 Score=54.39 Aligned_cols=80 Identities=15% Similarity=0.085 Sum_probs=53.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCC-HHHHHHHHHHHHHcCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS-LDSVRQFVDTFRRSGR 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~-~~~v~~~~~~~~~~~g 163 (350)
.|.++||+|+ |+||...++.+...|+.+|+.++++.++.+.+ +++ |... + .|..+ .+++.+.+.++.. +
T Consensus 191 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a-~~l---Ga~~-v--i~~~~~~~~~~~~i~~~t~--g 260 (373)
T 1p0f_A 191 PGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKA-IEL---GATE-C--LNPKDYDKPIYEVICEKTN--G 260 (373)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHH-HHT---TCSE-E--ECGGGCSSCHHHHHHHHTT--S
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH-HHc---CCcE-E--EecccccchHHHHHHHHhC--C
Confidence 5789999995 99999999988888976899998887776544 333 3322 2 34332 1223333333322 4
Q ss_pred CCcEEEEcccc
Q 018819 164 PLDVLVCNAAV 174 (350)
Q Consensus 164 ~id~lv~~Ag~ 174 (350)
++|++|.++|.
T Consensus 261 g~Dvvid~~g~ 271 (373)
T 1p0f_A 261 GVDYAVECAGR 271 (373)
T ss_dssp CBSEEEECSCC
T ss_pred CCCEEEECCCC
Confidence 79999999874
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0069 Score=54.81 Aligned_cols=74 Identities=14% Similarity=0.198 Sum_probs=50.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+|.+++|+||+|++|...++.+...|+ +|+.+.++. + .+..+++ |... . .|..+.+.+. +...+
T Consensus 152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~~~~-~-~~~~~~l---Ga~~-~--i~~~~~~~~~-------~~~~g 215 (321)
T 3tqh_A 152 QGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTASKR-N-HAFLKAL---GAEQ-C--INYHEEDFLL-------AISTP 215 (321)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEECHH-H-HHHHHHH---TCSE-E--EETTTSCHHH-------HCCSC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeccc-h-HHHHHHc---CCCE-E--EeCCCcchhh-------hhccC
Confidence 678999999999999999999999997 788777543 3 3334444 3332 2 3444433222 12247
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|.+.|.
T Consensus 216 ~D~v~d~~g~ 225 (321)
T 3tqh_A 216 VDAVIDLVGG 225 (321)
T ss_dssp EEEEEESSCH
T ss_pred CCEEEECCCc
Confidence 9999999884
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.025 Score=52.26 Aligned_cols=78 Identities=19% Similarity=0.193 Sum_probs=51.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.|.++||+|++|++|...++.+...|+ +|+.+. +.++.+ ..+++ |... + .|..+.+- .+.+.++. .++
T Consensus 164 ~g~~VlV~Ga~G~vG~~a~qla~~~Ga-~Vi~~~-~~~~~~-~~~~l---Ga~~-v--i~~~~~~~-~~~v~~~t--~g~ 231 (371)
T 3gqv_A 164 KPVYVLVYGGSTATATVTMQMLRLSGY-IPIATC-SPHNFD-LAKSR---GAEE-V--FDYRAPNL-AQTIRTYT--KNN 231 (371)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHH-HHHHT---TCSE-E--EETTSTTH-HHHHHHHT--TTC
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe-CHHHHH-HHHHc---CCcE-E--EECCCchH-HHHHHHHc--cCC
Confidence 678999999999999999999999997 777776 455544 33444 3322 2 34444332 22222222 246
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|.++|.
T Consensus 232 ~d~v~d~~g~ 241 (371)
T 3gqv_A 232 LRYALDCITN 241 (371)
T ss_dssp CCEEEESSCS
T ss_pred ccEEEECCCc
Confidence 9999999885
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0076 Score=55.18 Aligned_cols=69 Identities=19% Similarity=0.234 Sum_probs=50.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.|.++||+|+ |+||...++.+...|+ +|+.++++.++.+.+ +++ |....+ ++.+.+.+ +
T Consensus 176 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~-~~l---Ga~~v~-----~~~~~~~~----------~ 234 (348)
T 3two_A 176 KGTKVGVAGF-GGLGSMAVKYAVAMGA-EVSVFARNEHKKQDA-LSM---GVKHFY-----TDPKQCKE----------E 234 (348)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHTTC-EEEEECSSSTTHHHH-HHT---TCSEEE-----SSGGGCCS----------C
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH-Hhc---CCCeec-----CCHHHHhc----------C
Confidence 5889999997 9999999999989997 899999887776644 333 333322 33332211 7
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|.++|.
T Consensus 235 ~D~vid~~g~ 244 (348)
T 3two_A 235 LDFIISTIPT 244 (348)
T ss_dssp EEEEEECCCS
T ss_pred CCEEEECCCc
Confidence 9999999885
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.015 Score=56.82 Aligned_cols=37 Identities=24% Similarity=0.359 Sum_probs=33.4
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
.++++.++|.|+ ||+|.++++.|+..|..++.+++.+
T Consensus 323 kL~~arVLIVGa-GGLGs~vA~~La~aGVG~ItLvD~D 359 (615)
T 4gsl_A 323 IIKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNG 359 (615)
T ss_dssp HHHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred HHhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 467889999997 7999999999999999899998875
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=96.01 E-value=0.012 Score=54.19 Aligned_cols=74 Identities=19% Similarity=0.179 Sum_probs=51.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCH-HHHHHHHHHHHHcCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL-DSVRQFVDTFRRSGR 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~-~~v~~~~~~~~~~~g 163 (350)
.|+++||+|+ |++|...++.+...|+ +|+.++++.++.+.+. ++ |... + .|..+. +. .+.+. +
T Consensus 179 ~g~~VlV~Ga-G~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~-~l---Ga~~-v--~~~~~~~~~----~~~~~---~ 242 (360)
T 1piw_A 179 PGKKVGIVGL-GGIGSMGTLISKAMGA-ETYVISRSSRKREDAM-KM---GADH-Y--IATLEEGDW----GEKYF---D 242 (360)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHH-HH---TCSE-E--EEGGGTSCH----HHHSC---S
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHH-Hc---CCCE-E--EcCcCchHH----HHHhh---c
Confidence 5789999999 9999999998888997 7999998877765543 34 3222 2 233332 21 22221 4
Q ss_pred CCcEEEEcccc
Q 018819 164 PLDVLVCNAAV 174 (350)
Q Consensus 164 ~id~lv~~Ag~ 174 (350)
++|++|.++|.
T Consensus 243 ~~D~vid~~g~ 253 (360)
T 1piw_A 243 TFDLIVVCASS 253 (360)
T ss_dssp CEEEEEECCSC
T ss_pred CCCEEEECCCC
Confidence 79999999986
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.025 Score=52.24 Aligned_cols=79 Identities=18% Similarity=0.152 Sum_probs=52.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.++++||+|+ |++|...++.+...|+.+|+.+++++++.+.+ +++ |... + .|..+.+..+. +.++. .++
T Consensus 190 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a-~~l---Ga~~-v--i~~~~~~~~~~-~~~~~--~gg 258 (371)
T 1f8f_A 190 PASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLELA-KQL---GATH-V--INSKTQDPVAA-IKEIT--DGG 258 (371)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH-HHH---TCSE-E--EETTTSCHHHH-HHHHT--TSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH-HHc---CCCE-E--ecCCccCHHHH-HHHhc--CCC
Confidence 5789999995 99999999988888976789998887766544 344 3222 2 24433222222 22221 237
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|.++|.
T Consensus 259 ~D~vid~~g~ 268 (371)
T 1f8f_A 259 VNFALESTGS 268 (371)
T ss_dssp EEEEEECSCC
T ss_pred CcEEEECCCC
Confidence 9999999884
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=95.92 E-value=0.017 Score=56.34 Aligned_cols=62 Identities=27% Similarity=0.257 Sum_probs=46.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC-------------------hhHHHHHHHHhcc--CCCceEEE
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD-------------------FLKAERAAKSAGM--AKENYTIM 141 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~-------------------~~~~~~~~~~l~~--~~~~v~~~ 141 (350)
.++++.++|.|+ ||+|.++++.|+..|..++.+++.+ ..+.+.+.+.+.. .+.++..+
T Consensus 324 kL~~~kVLIVGa-GGLGs~va~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~iNP~v~v~~~ 402 (598)
T 3vh1_A 324 IIKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGV 402 (598)
T ss_dssp HHHTCEEEEECC-SHHHHHHHHHHHTTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHHhHCCCcEEEEE
Confidence 567889999997 7999999999999998899999653 1456666666654 34455666
Q ss_pred EccC
Q 018819 142 HLDL 145 (350)
Q Consensus 142 ~~Dv 145 (350)
..++
T Consensus 403 ~~~I 406 (598)
T 3vh1_A 403 KLSI 406 (598)
T ss_dssp CCCC
T ss_pred eccc
Confidence 5554
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.038 Score=50.10 Aligned_cols=115 Identities=17% Similarity=0.079 Sum_probs=63.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC-cEEEEEecChhHHHHHHHHhccCC---CceEEEEccCCCHHHHHHHHHHHHH
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAK---ENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga-~~Vi~~~r~~~~~~~~~~~l~~~~---~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
.++.+.|+|+ |++|..++..|+..|. ..|++++++.++++....++.... ..+.....| . +
T Consensus 8 ~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~---~-----------~ 72 (326)
T 3vku_A 8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAE---Y-----------S 72 (326)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECC---G-----------G
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECc---H-----------H
Confidence 4568999996 9999999999999883 389999998877665555553221 123333222 1 1
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEec
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS 226 (350)
.+..-|++|+.||..... .++. ...++.|..- .+.+.+.+.+.. +.+.++++|-
T Consensus 73 a~~~aDiVvi~ag~~~kp----G~tR---~dL~~~N~~I----~~~i~~~i~~~~-p~a~ilvvtN 126 (326)
T 3vku_A 73 DAKDADLVVITAGAPQKP----GETR---LDLVNKNLKI----LKSIVDPIVDSG-FNGIFLVAAN 126 (326)
T ss_dssp GGTTCSEEEECCCCC-----------------------C----HHHHHHHHHTTT-CCSEEEECSS
T ss_pred HhcCCCEEEECCCCCCCC----CchH---HHHHHHHHHH----HHHHHHHHHhcC-CceEEEEccC
Confidence 234689999999974321 1222 2234455433 344444444433 2467777654
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=95.70 E-value=0.013 Score=53.82 Aligned_cols=82 Identities=22% Similarity=0.302 Sum_probs=57.0
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh-------------------hHHHHHHHHhcc--CCCceEE
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-------------------LKAERAAKSAGM--AKENYTI 140 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~-------------------~~~~~~~~~l~~--~~~~v~~ 140 (350)
..+++++|+|.|+ ||+|.++++.|+..|..++.+++++. .+.+.+.+.+.. ...++..
T Consensus 114 ~~L~~~~VlvvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~ 192 (353)
T 3h5n_A 114 DKLKNAKVVILGC-GGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSE 192 (353)
T ss_dssp HHHHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEE
T ss_pred HHHhCCeEEEECC-CHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEE
Confidence 3567889999997 89999999999999988999998752 234444444433 2345666
Q ss_pred EEccCCCHHHHHHHHHHHHHcCCCCcEEEEcc
Q 018819 141 MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNA 172 (350)
Q Consensus 141 ~~~Dvs~~~~v~~~~~~~~~~~g~id~lv~~A 172 (350)
+..++++..++. + +...|+||.+.
T Consensus 193 ~~~~i~~~~~~~-------~-~~~~DlVvd~~ 216 (353)
T 3h5n_A 193 IALNINDYTDLH-------K-VPEADIWVVSA 216 (353)
T ss_dssp EECCCCSGGGGG-------G-SCCCSEEEECC
T ss_pred eecccCchhhhh-------H-hccCCEEEEec
Confidence 777776644222 1 34688888764
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.044 Score=51.08 Aligned_cols=80 Identities=19% Similarity=0.163 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.|.++||+|+ |++|...++.+...|+.+|+.++++.++.+.+ ++ .|. .. +|..+.+.+.+.+.++.. ..+
T Consensus 185 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a-~~---lGa--~~--i~~~~~~~~~~~~~~~~~-g~g 254 (398)
T 2dph_A 185 PGSHVYIAGA-GPVGRCAAAGARLLGAACVIVGDQNPERLKLL-SD---AGF--ET--IDLRNSAPLRDQIDQILG-KPE 254 (398)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH-HT---TTC--EE--EETTSSSCHHHHHHHHHS-SSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH-HH---cCC--cE--EcCCCcchHHHHHHHHhC-CCC
Confidence 5789999996 99999999888888976899999987766543 23 343 23 354442211222222221 226
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|.++|.
T Consensus 255 ~Dvvid~~g~ 264 (398)
T 2dph_A 255 VDCGVDAVGF 264 (398)
T ss_dssp EEEEEECSCT
T ss_pred CCEEEECCCC
Confidence 9999999985
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.047 Score=49.74 Aligned_cols=79 Identities=11% Similarity=0.150 Sum_probs=51.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.+.+++|+|+ |++|...++.+...|+.+|+.++++.++.+.+ +++ |... ++ |..+ +..+. +.++.. ..+
T Consensus 171 ~g~~vlv~Ga-G~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~-~~l---Ga~~-~i--~~~~-~~~~~-v~~~t~-g~g 239 (345)
T 3jv7_A 171 PGSTAVVIGV-GGLGHVGIQILRAVSAARVIAVDLDDDRLALA-REV---GADA-AV--KSGA-GAADA-IRELTG-GQG 239 (345)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESCHHHHHHH-HHT---TCSE-EE--ECST-THHHH-HHHHHG-GGC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH-HHc---CCCE-EE--cCCC-cHHHH-HHHHhC-CCC
Confidence 5789999998 99999988877777446999999988776544 333 3332 22 3222 22222 222222 127
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|.+.|.
T Consensus 240 ~d~v~d~~G~ 249 (345)
T 3jv7_A 240 ATAVFDFVGA 249 (345)
T ss_dssp EEEEEESSCC
T ss_pred CeEEEECCCC
Confidence 9999999885
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=95.62 E-value=0.016 Score=53.05 Aligned_cols=80 Identities=19% Similarity=0.180 Sum_probs=52.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.|.++||+|+ |++|...++.+...|+.+|+.+++++++.+.+ +++. ... + .|..+.+..+.+ .++. ...+
T Consensus 166 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~-~~lG---a~~-v--i~~~~~~~~~~v-~~~t-~g~g 235 (352)
T 3fpc_A 166 LGDTVCVIGI-GPVGLMSVAGANHLGAGRIFAVGSRKHCCDIA-LEYG---ATD-I--INYKNGDIVEQI-LKAT-DGKG 235 (352)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHTTTCSSEEEECCCHHHHHHH-HHHT---CCE-E--ECGGGSCHHHHH-HHHT-TTCC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH-HHhC---Cce-E--EcCCCcCHHHHH-HHHc-CCCC
Confidence 5789999985 99999999988889976799998887665433 3443 321 2 344333222222 2221 1226
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|.++|.
T Consensus 236 ~D~v~d~~g~ 245 (352)
T 3fpc_A 236 VDKVVIAGGD 245 (352)
T ss_dssp EEEEEECSSC
T ss_pred CCEEEECCCC
Confidence 9999999875
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.022 Score=47.92 Aligned_cols=42 Identities=33% Similarity=0.393 Sum_probs=35.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHH
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS 130 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~ 130 (350)
+++|+||+|.+|..+++.|++.| ..|++++|+.+..+...+.
T Consensus 2 ~i~iiGa~G~~G~~ia~~l~~~g-~~V~~~~r~~~~~~~~~~~ 43 (212)
T 1jay_A 2 RVALLGGTGNLGKGLALRLATLG-HEIVVGSRREEKAEAKAAE 43 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTT-CEEEEEESSHHHHHHHHHH
T ss_pred eEEEEcCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH
Confidence 57899999999999999999999 5899999997776655443
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.078 Score=48.20 Aligned_cols=80 Identities=21% Similarity=0.190 Sum_probs=53.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.+++++|+|+ ||+|...++.+...|+..++.+++++++.+. .+++ |... . .|.++.+ ..+....+.+ ...
T Consensus 160 ~g~~VlV~Ga-G~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~-a~~l---Ga~~-~--i~~~~~~-~~~~~~~~~~-~~g 229 (346)
T 4a2c_A 160 ENKNVIIIGA-GTIGLLAIQCAVALGAKSVTAIDISSEKLAL-AKSF---GAMQ-T--FNSSEMS-APQMQSVLRE-LRF 229 (346)
T ss_dssp TTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHH-HHHT---TCSE-E--EETTTSC-HHHHHHHHGG-GCS
T ss_pred CCCEEEEECC-CCcchHHHHHHHHcCCcEEEEEechHHHHHH-HHHc---CCeE-E--EeCCCCC-HHHHHHhhcc-cCC
Confidence 6789999987 8999999999999998778888888766543 3334 3332 2 2333322 2233333332 356
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
.|+++.++|.
T Consensus 230 ~d~v~d~~G~ 239 (346)
T 4a2c_A 230 NQLILETAGV 239 (346)
T ss_dssp SEEEEECSCS
T ss_pred cccccccccc
Confidence 8999988874
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.11 Score=47.85 Aligned_cols=84 Identities=15% Similarity=0.128 Sum_probs=55.0
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccC-----------CCHHHHH
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDL-----------ASLDSVR 152 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dv-----------s~~~~v~ 152 (350)
+++++++|+|+ |.+|..+++.+...|+ +|++++|+..+.+.+.+ + |. .++..|+ -..+...
T Consensus 182 v~~~kV~ViG~-G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~-l---Ga--~~~~l~~~~~~~~gya~~~~~~~~~ 253 (381)
T 3p2y_A 182 VKPASALVLGV-GVAGLQALATAKRLGA-KTTGYDVRPEVAEQVRS-V---GA--QWLDLGIDAAGEGGYARELSEAERA 253 (381)
T ss_dssp ECCCEEEEESC-SHHHHHHHHHHHHHTC-EEEEECSSGGGHHHHHH-T---TC--EECCCC-------------CHHHHH
T ss_pred cCCCEEEEECc-hHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH-c---CC--eEEeccccccccccchhhhhHHHHh
Confidence 47789999998 7999999999999997 89999999877766543 3 22 2322221 0011112
Q ss_pred HHHHHHHHcCCCCcEEEEccccC
Q 018819 153 QFVDTFRRSGRPLDVLVCNAAVY 175 (350)
Q Consensus 153 ~~~~~~~~~~g~id~lv~~Ag~~ 175 (350)
.-.+.+.+.....|++|+++.+.
T Consensus 254 ~~~~~l~e~l~~aDIVI~tv~iP 276 (381)
T 3p2y_A 254 QQQQALEDAITKFDIVITTALVP 276 (381)
T ss_dssp HHHHHHHHHHTTCSEEEECCCCT
T ss_pred hhHHHHHHHHhcCCEEEECCCCC
Confidence 22223333335799999987653
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.045 Score=50.88 Aligned_cols=44 Identities=16% Similarity=0.201 Sum_probs=37.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA 128 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~ 128 (350)
.+.+++++|+|+ |++|+.+++.+...|+ +|++++++..+.+...
T Consensus 169 ~l~g~~V~ViGa-G~iG~~aa~~a~~~Ga-~V~~~d~~~~~~~~~~ 212 (384)
T 1l7d_A 169 TVPPARVLVFGV-GVAGLQAIATAKRLGA-VVMATDVRAATKEQVE 212 (384)
T ss_dssp EECCCEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHH
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence 468899999996 8999999999999997 7999999877665543
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.011 Score=53.48 Aligned_cols=73 Identities=15% Similarity=0.146 Sum_probs=48.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
++ +||+|++|++|...++.+...|+ +|+.+++++++.+.+. ++ |.+..+ |..+.+. ++++ ..+++
T Consensus 148 g~-VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~-~l---Ga~~vi---~~~~~~~----~~~~--~~~~~ 212 (324)
T 3nx4_A 148 GE-VVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLK-SL---GANRIL---SRDEFAE----SRPL--EKQLW 212 (324)
T ss_dssp CC-EEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHH-HH---TCSEEE---EGGGSSC----CCSS--CCCCE
T ss_pred Ce-EEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH-hc---CCCEEE---ecCCHHH----HHhh--cCCCc
Confidence 45 99999999999999999999998 8999998877765543 33 333222 2222111 1111 12478
Q ss_pred cEEEEccc
Q 018819 166 DVLVCNAA 173 (350)
Q Consensus 166 d~lv~~Ag 173 (350)
|++|.++|
T Consensus 213 d~v~d~~g 220 (324)
T 3nx4_A 213 AGAIDTVG 220 (324)
T ss_dssp EEEEESSC
T ss_pred cEEEECCC
Confidence 99998876
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.093 Score=47.50 Aligned_cols=115 Identities=12% Similarity=0.048 Sum_probs=64.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhcc------CCCceEEEEccCCCHHHHHHHHHHH
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM------AKENYTIMHLDLASLDSVRQFVDTF 158 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~------~~~~v~~~~~Dvs~~~~v~~~~~~~ 158 (350)
+.+.+.|+|+ |.+|.+++..|+..|...|++.+++.++.+....++.. ...++.. ..| .+
T Consensus 6 ~~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-t~d---~~--------- 71 (324)
T 3gvi_A 6 ARNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTG-AND---YA--------- 71 (324)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE-ESS---GG---------
T ss_pred cCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEE-eCC---HH---------
Confidence 4567999998 99999999999999822899999987665433333321 1122222 122 11
Q ss_pred HHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEecc
Q 018819 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 227 (350)
Q Consensus 159 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~ 227 (350)
.+..-|++|..+|..... .++.. ..+..|..-...+.+. +.+.. +.+.++++|-.
T Consensus 72 --a~~~aDiVIiaag~p~k~----G~~R~---dl~~~N~~i~~~i~~~----i~~~~-p~a~iivvtNP 126 (324)
T 3gvi_A 72 --AIEGADVVIVTAGVPRKP----GMSRD---DLLGINLKVMEQVGAG----IKKYA-PEAFVICITNP 126 (324)
T ss_dssp --GGTTCSEEEECCSCCCC---------C---HHHHHHHHHHHHHHHH----HHHHC-TTCEEEECCSS
T ss_pred --HHCCCCEEEEccCcCCCC----CCCHH---HHHHhhHHHHHHHHHH----HHHHC-CCeEEEecCCC
Confidence 123689999999975321 12222 2344454433333333 33322 24567776543
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=0.17 Score=44.67 Aligned_cols=42 Identities=21% Similarity=0.138 Sum_probs=34.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHH
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS 130 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~ 130 (350)
+++.|.|+ |.+|..+|+.|++.| ..|++.+++.+..+...+.
T Consensus 5 ~kV~VIGa-G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~ 46 (283)
T 4e12_A 5 TNVTVLGT-GVLGSQIAFQTAFHG-FAVTAYDINTDALDAAKKR 46 (283)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSSHHHHHHHHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHH
Confidence 46778875 889999999999999 5999999998776655543
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.036 Score=52.04 Aligned_cols=57 Identities=23% Similarity=0.255 Sum_probs=41.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHH
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSV 151 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v 151 (350)
..++|.|. |-+|..+++.|.+.| ..|++++++.+..+.+.+. .+.++.+|.++++.+
T Consensus 5 ~~viIiG~-Gr~G~~va~~L~~~g-~~vvvId~d~~~v~~~~~~------g~~vi~GDat~~~~L 61 (413)
T 3l9w_A 5 MRVIIAGF-GRFGQITGRLLLSSG-VKMVVLDHDPDHIETLRKF------GMKVFYGDATRMDLL 61 (413)
T ss_dssp CSEEEECC-SHHHHHHHHHHHHTT-CCEEEEECCHHHHHHHHHT------TCCCEESCTTCHHHH
T ss_pred CeEEEECC-CHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHhC------CCeEEEcCCCCHHHH
Confidence 35888986 789999999999999 5899999998776655431 133444555555544
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.13 Score=47.95 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=37.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHH
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK 129 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~ 129 (350)
+.+.+++|+|+ |.+|..+++.+...|+ +|++++++..+.+.+.+
T Consensus 188 v~~~kV~ViG~-G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~ 231 (405)
T 4dio_A 188 VPAAKIFVMGA-GVAGLQAIATARRLGA-VVSATDVRPAAKEQVAS 231 (405)
T ss_dssp ECCCEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSSTTHHHHHHH
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHH
Confidence 56789999998 7999999999999997 89999999877665543
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.17 Score=45.09 Aligned_cols=113 Identities=13% Similarity=0.056 Sum_probs=65.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC-cEEEEEecChhHHHHHHHHhcc----CCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 88 SVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGM----AKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga-~~Vi~~~r~~~~~~~~~~~l~~----~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+.|+|+ |.+|.+++..|+..|. ..|++.+++++.++....++.. ......+... +|.++ +
T Consensus 2 kI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t--~d~~a-----------~ 67 (294)
T 1oju_A 2 KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG--ADYSL-----------L 67 (294)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEE--SCGGG-----------G
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEe--CCHHH-----------h
Confidence 5789999 9999999999999882 2899999998765532222211 1112222211 12111 1
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEec
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS 226 (350)
..-|++|..+|..... .++..+ .+..|. .+.+.+.+.+.+.. +.+.|+++|-
T Consensus 68 ~~aDiVViaag~~~kp----G~~R~d---l~~~N~----~i~~~i~~~i~~~~-p~a~iivvsN 119 (294)
T 1oju_A 68 KGSEIIVVTAGLARKP----GMTRLD---LAHKNA----GIIKDIAKKIVENA-PESKILVVTN 119 (294)
T ss_dssp TTCSEEEECCCCCCCS----SCCHHH---HHHHHH----HHHHHHHHHHHTTS-TTCEEEECSS
T ss_pred CCCCEEEECCCCCCCC----CCcHHH---HHHHHH----HHHHHHHHHHHhhC-CCeEEEEeCC
Confidence 3689999999985322 234433 344453 33444445454442 2456666653
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.16 Score=45.82 Aligned_cols=116 Identities=11% Similarity=0.069 Sum_probs=67.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccC----CCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA----KENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~----~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
+.+.+.|+|+ |.+|.+++..|+..|...|++.+++.++.+....++... +....+...+ |.+
T Consensus 4 ~~~kI~iiGa-G~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~--d~~----------- 69 (321)
T 3p7m_A 4 ARKKITLVGA-GNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTN--DYK----------- 69 (321)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEES--CGG-----------
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcC--CHH-----------
Confidence 3457888895 999999999999988328999999887665444444321 1122222111 211
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEec
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS 226 (350)
.+..-|++|..+|..... .++..+ .+..|..-...+.+.+..+ . +.+.++++|-
T Consensus 70 a~~~aDvVIi~ag~p~k~----G~~R~d---l~~~N~~i~~~i~~~i~~~----~-p~a~vivvtN 123 (321)
T 3p7m_A 70 DLENSDVVIVTAGVPRKP----GMSRDD---LLGINIKVMQTVGEGIKHN----C-PNAFVICITN 123 (321)
T ss_dssp GGTTCSEEEECCSCCCCT----TCCHHH---HHHHHHHHHHHHHHHHHHH----C-TTCEEEECCS
T ss_pred HHCCCCEEEEcCCcCCCC----CCCHHH---HHHHhHHHHHHHHHHHHHH----C-CCcEEEEecC
Confidence 123689999999975332 234433 3445554444444443332 2 2356666643
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.15 Score=45.98 Aligned_cols=115 Identities=17% Similarity=0.114 Sum_probs=67.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC--hhHHHHHHHHhcc------CCCceEEEEccCCCHHHHHHHH
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD--FLKAERAAKSAGM------AKENYTIMHLDLASLDSVRQFV 155 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~--~~~~~~~~~~l~~------~~~~v~~~~~Dvs~~~~v~~~~ 155 (350)
++.+.+.|+|+ |.+|..+|..|+..|...|++.+++ .+..+....++.. ...++... .| .
T Consensus 6 ~~~~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t-~d---~------- 73 (315)
T 3tl2_A 6 IKRKKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGT-SD---Y------- 73 (315)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEE-SC---G-------
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEc-CC---H-------
Confidence 45668999997 9999999999999993289999998 4444333222211 11122211 12 1
Q ss_pred HHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEec
Q 018819 156 DTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (350)
Q Consensus 156 ~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS 226 (350)
+.+...|++|.++|..... .++.. ..+..|..-.-.+.+.+..+ . +.+.++++|-
T Consensus 74 ----~a~~~aDvVIiaag~p~kp----g~~R~---dl~~~N~~i~~~i~~~i~~~----~-p~a~vlvvsN 128 (315)
T 3tl2_A 74 ----ADTADSDVVVITAGIARKP----GMSRD---DLVATNSKIMKSITRDIAKH----S-PNAIIVVLTN 128 (315)
T ss_dssp ----GGGTTCSEEEECCSCCCCT----TCCHH---HHHHHHHHHHHHHHHHHHHH----C-TTCEEEECCS
T ss_pred ----HHhCCCCEEEEeCCCCCCC----CCCHH---HHHHHHHHHHHHHHHHHHHh----C-CCeEEEECCC
Confidence 1234789999999985432 23443 34556655444444444332 2 2457777664
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.35 Score=44.08 Aligned_cols=102 Identities=9% Similarity=-0.056 Sum_probs=58.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC------cEEEEEecChh--HHHHHHHHhccC--CCceEEEEccCCCHHHHHHH
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGK------WHIIMACRDFL--KAERAAKSAGMA--KENYTIMHLDLASLDSVRQF 154 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga------~~Vi~~~r~~~--~~~~~~~~l~~~--~~~v~~~~~Dvs~~~~v~~~ 154 (350)
+.-.+.|+||+|+||..++..|+.... ..+.+++.++. .++-...++... ......+..+ |.. +
T Consensus 23 ~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~--~~~---~- 96 (345)
T 4h7p_A 23 SAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTA--DPR---V- 96 (345)
T ss_dssp CCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEES--CHH---H-
T ss_pred CCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcC--ChH---H-
Confidence 444799999999999999999987542 25888887642 233333333221 1112222221 221 1
Q ss_pred HHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHH
Q 018819 155 VDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205 (350)
Q Consensus 155 ~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~ 205 (350)
.+..-|++|..||..+. + .++.++ .++.|..=.-.+.+
T Consensus 97 ------a~~~advVvi~aG~prk--p--GmtR~D---Ll~~Na~I~~~~~~ 134 (345)
T 4h7p_A 97 ------AFDGVAIAIMCGAFPRK--A--GMERKD---LLEMNARIFKEQGE 134 (345)
T ss_dssp ------HTTTCSEEEECCCCCCC--T--TCCHHH---HHHHHHHHHHHHHH
T ss_pred ------HhCCCCEEEECCCCCCC--C--CCCHHH---HHHHhHHHHHHHHH
Confidence 13478999999998543 2 346554 45666543333333
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.041 Score=52.45 Aligned_cols=72 Identities=18% Similarity=0.195 Sum_probs=56.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
.++|.|+ |-+|+.+|+.|.++| +.|++.+++++..+.+.+.+ .+..+.+|.++++-++++= ...-|.
T Consensus 5 ~iiI~G~-G~vG~~la~~L~~~~-~~v~vId~d~~~~~~~~~~~-----~~~~i~Gd~~~~~~L~~Ag------i~~ad~ 71 (461)
T 4g65_A 5 KIIILGA-GQVGGTLAENLVGEN-NDITIVDKDGDRLRELQDKY-----DLRVVNGHASHPDVLHEAG------AQDADM 71 (461)
T ss_dssp EEEEECC-SHHHHHHHHHTCSTT-EEEEEEESCHHHHHHHHHHS-----SCEEEESCTTCHHHHHHHT------TTTCSE
T ss_pred EEEEECC-CHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHhc-----CcEEEEEcCCCHHHHHhcC------CCcCCE
Confidence 5888887 799999999999999 69999999998888776655 4678889999988776651 135677
Q ss_pred EEEcc
Q 018819 168 LVCNA 172 (350)
Q Consensus 168 lv~~A 172 (350)
+|...
T Consensus 72 ~ia~t 76 (461)
T 4g65_A 72 LVAVT 76 (461)
T ss_dssp EEECC
T ss_pred EEEEc
Confidence 76543
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.34 Score=43.48 Aligned_cols=115 Identities=16% Similarity=0.052 Sum_probs=64.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHc-C-CcEEEEEecChhHHHHHHHHhccCCCceEEEEc-cCCCHHHHHHHHHHHHHcCCC
Q 018819 88 SVIITGASSGLGLATAKALAET-G-KWHIIMACRDFLKAERAAKSAGMAKENYTIMHL-DLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~-G-a~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~-Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.+.|+||+|.+|..++..|..+ + +..+++++.+. ..+-...++......+..... .-.+.++ + ..
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~----~-------~~ 69 (312)
T 3hhp_A 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPA----L-------EG 69 (312)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHTSCSSEEEEEECSSCCHHH----H-------TT
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhCCCCCceEEEecCCCcHHH----h-------CC
Confidence 5789999999999999999876 4 35899999876 333333344332222222211 1112222 1 26
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEec
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS 226 (350)
.|++|..||..... .++.. ..++.|..-...+.+.+..+ . +.+.++++|-
T Consensus 70 aDivii~ag~~rkp----G~~R~---dll~~N~~I~~~i~~~i~~~----~-p~a~vlvvtN 119 (312)
T 3hhp_A 70 ADVVLISAGVARKP----GMDRS---DLFNVNAGIVKNLVQQVAKT----C-PKACIGIITN 119 (312)
T ss_dssp CSEEEECCSCSCCT----TCCHH---HHHHHHHHHHHHHHHHHHHH----C-TTSEEEECSS
T ss_pred CCEEEEeCCCCCCC----CCCHH---HHHHHHHHHHHHHHHHHHHH----C-CCcEEEEecC
Confidence 89999999985431 23443 34555654444444444332 1 1345666543
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=95.01 E-value=0.11 Score=47.14 Aligned_cols=116 Identities=11% Similarity=0.054 Sum_probs=68.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC-cEEEEEecChhHHHHHHHHhccC---CCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMA---KENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga-~~Vi~~~r~~~~~~~~~~~l~~~---~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
+.+.+.|+|+ |.+|..++..|+.+|. ..|++++++.+.++....++... ......+.. .|.+
T Consensus 18 ~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~--~d~~----------- 83 (331)
T 4aj2_A 18 PQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSS--KDYS----------- 83 (331)
T ss_dssp CSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEEC--SSGG-----------
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEc--CCHH-----------
Confidence 4557999997 9999999999999883 37999999887766655555321 111122222 1221
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEec
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS 226 (350)
....-|++|..||.... + .++..+ .++.|..-...+.+.+..+ . +.+.++++|-
T Consensus 84 ~~~~aDiVvi~aG~~~k--p--G~tR~d---L~~~N~~I~~~i~~~i~~~----~-p~a~vlvvtN 137 (331)
T 4aj2_A 84 VTANSKLVIITAGARQQ--E--GESRLN---LVQRNVNIFKFIIPNVVKY----S-PQCKLLIVSN 137 (331)
T ss_dssp GGTTEEEEEECCSCCCC--T--TCCGGG---GHHHHHHHHHHHHHHHHHH----C-TTCEEEECSS
T ss_pred HhCCCCEEEEccCCCCC--C--CccHHH---HHHHHHHHHHHHHHHHHHH----C-CCeEEEEecC
Confidence 12368999999998532 1 233332 4555554444444443332 1 2356666654
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.026 Score=50.76 Aligned_cols=68 Identities=12% Similarity=0.095 Sum_probs=46.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.|.++||+|+ |++|...++.+...|+ +|+.++ +.++.+.+ +++ |... ++ | | .+++ .++
T Consensus 142 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~-~~l---Ga~~-v~--~--d---~~~v-------~~g 199 (315)
T 3goh_A 142 KQREVLIVGF-GAVNNLLTQMLNNAGY-VVDLVS-ASLSQALA-AKR---GVRH-LY--R--E---PSQV-------TQK 199 (315)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHH-HHH---TEEE-EE--S--S---GGGC-------CSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHH-HHc---CCCE-EE--c--C---HHHh-------CCC
Confidence 5889999999 9999999998888998 888888 66555443 334 3322 22 3 2 1221 457
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|.+.|.
T Consensus 200 ~Dvv~d~~g~ 209 (315)
T 3goh_A 200 YFAIFDAVNS 209 (315)
T ss_dssp EEEEECC---
T ss_pred ccEEEECCCc
Confidence 9999999885
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=94.88 E-value=0.055 Score=49.82 Aligned_cols=47 Identities=17% Similarity=0.211 Sum_probs=40.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHh
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA 131 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l 131 (350)
+++||+++|.|. |.+|..+|+.|.+.|+ +|++.+++.+++++..+++
T Consensus 170 ~L~GktV~V~G~-G~VG~~~A~~L~~~Ga-kVvv~D~~~~~l~~~a~~~ 216 (364)
T 1leh_A 170 SLEGLAVSVQGL-GNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEE 216 (364)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHH
T ss_pred CCCcCEEEEECc-hHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHc
Confidence 589999999996 8899999999999997 7889999887777666654
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=94.77 E-value=0.044 Score=48.31 Aligned_cols=47 Identities=21% Similarity=0.344 Sum_probs=40.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhc
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG 132 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~ 132 (350)
.+++++|.|+ ||.|++++..|.+.|+.+|.+++|+.++.+++.+++.
T Consensus 118 ~~~~vlvlGa-Ggaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~ 164 (271)
T 1npy_A 118 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYG 164 (271)
T ss_dssp TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHT
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcC
Confidence 4678999995 8999999999999997789999999988888877663
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=94.70 E-value=0.049 Score=49.47 Aligned_cols=71 Identities=14% Similarity=0.207 Sum_probs=52.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
.+.++|.|+ |.+|+.+++.|.++| . |++++++++..+ ..+ ..+.++.+|.+|++.++++ .....
T Consensus 115 ~~~viI~G~-G~~g~~l~~~L~~~g-~-v~vid~~~~~~~-~~~------~~~~~i~gd~~~~~~L~~a------~i~~a 178 (336)
T 1lnq_A 115 SRHVVICGW-SESTLECLRELRGSE-V-FVLAEDENVRKK-VLR------SGANFVHGDPTRVSDLEKA------NVRGA 178 (336)
T ss_dssp -CEEEEESC-CHHHHHHHTTGGGSC-E-EEEESCGGGHHH-HHH------TTCEEEESCTTSHHHHHHT------CSTTE
T ss_pred cCCEEEECC-cHHHHHHHHHHHhCC-c-EEEEeCChhhhh-HHh------CCcEEEEeCCCCHHHHHhc------Chhhc
Confidence 457999996 899999999999999 6 888999887766 332 2467889999998877654 11246
Q ss_pred cEEEEcc
Q 018819 166 DVLVCNA 172 (350)
Q Consensus 166 d~lv~~A 172 (350)
|.+|...
T Consensus 179 ~~vi~~~ 185 (336)
T 1lnq_A 179 RAVIVDL 185 (336)
T ss_dssp EEEEECC
T ss_pred cEEEEcC
Confidence 6666543
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=94.69 E-value=0.1 Score=47.39 Aligned_cols=80 Identities=18% Similarity=0.145 Sum_probs=49.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.|.+++|+|+ |++|...+..+...|+.+|+.+++++++.+.. +++ |.... .|..+.+..+++.+ +.. ...
T Consensus 163 ~g~~VlV~Ga-G~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~-~~~---Ga~~~---i~~~~~~~~~~v~~-~t~-g~g 232 (348)
T 4eez_A 163 PGDWQVIFGA-GGLGNLAIQYAKNVFGAKVIAVDINQDKLNLA-KKI---GADVT---INSGDVNPVDEIKK-ITG-GLG 232 (348)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTSCCEEEEEESCHHHHHHH-HHT---TCSEE---EEC-CCCHHHHHHH-HTT-SSC
T ss_pred CCCEEEEEcC-CCccHHHHHHHHHhCCCEEEEEECcHHHhhhh-hhc---CCeEE---EeCCCCCHHHHhhh-hcC-CCC
Confidence 5789999987 78888888888777556999999987765433 333 33322 34444333333322 211 225
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|.++.+++.
T Consensus 233 ~d~~~~~~~~ 242 (348)
T 4eez_A 233 VQSAIVCAVA 242 (348)
T ss_dssp EEEEEECCSC
T ss_pred ceEEEEeccC
Confidence 7888887764
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=94.68 E-value=0.21 Score=44.95 Aligned_cols=115 Identities=12% Similarity=0.085 Sum_probs=66.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC-cEEEEEecChhHHHHHHHHhcc----CCCceEEEEccCCCHHHHHHHHHHHH
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGM----AKENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga-~~Vi~~~r~~~~~~~~~~~l~~----~~~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
....+.|+|+ |.+|..++..|+.+|. ..|++++.+.++++.....+.. .+..+.+.. | +.++
T Consensus 5 ~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-~--~~~a--------- 71 (317)
T 3d0o_A 5 KGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA-G--EYSD--------- 71 (317)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE-C--CGGG---------
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe-C--CHHH---------
Confidence 3457899998 9999999999998872 4799999887655543333221 112333332 2 2111
Q ss_pred HcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEec
Q 018819 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS 226 (350)
+..-|++|..+|..... ..+..+ .+..|..- .+.+.+.+.+.. +.+.||++|-
T Consensus 72 --~~~aDvVvi~ag~~~~~----g~~r~d---l~~~n~~i----~~~i~~~i~~~~-p~a~viv~tN 124 (317)
T 3d0o_A 72 --CHDADLVVICAGAAQKP----GETRLD---LVSKNLKI----FKSIVGEVMASK-FDGIFLVATN 124 (317)
T ss_dssp --GTTCSEEEECCCCCCCT----TCCHHH---HHHHHHHH----HHHHHHHHHHTT-CCSEEEECSS
T ss_pred --hCCCCEEEECCCCCCCC----CCcHHH---HHHHHHHH----HHHHHHHHHHhC-CCcEEEEecC
Confidence 23689999999985321 233332 34444443 334444444332 2466776543
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.16 Score=44.84 Aligned_cols=42 Identities=17% Similarity=0.221 Sum_probs=36.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHH
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK 129 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~ 129 (350)
+++.|.|++|.+|..+++.|.+.| ..|++++|+.+..+.+.+
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g-~~V~~~~r~~~~~~~~~~ 53 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSA-HHLAAIEIAPEGRDRLQG 53 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHSS-SEEEEECCSHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHh
Confidence 379999999999999999999999 599999999877665543
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.0052 Score=56.36 Aligned_cols=39 Identities=26% Similarity=0.364 Sum_probs=34.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK 123 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~ 123 (350)
.++||++.|.| .|.||+.+|+.|.+.|+ +|++.+++..+
T Consensus 172 ~L~GktV~I~G-~GnVG~~~A~~l~~~Ga-kVvvsD~~~~~ 210 (355)
T 1c1d_A 172 SLDGLTVLVQG-LGAVGGSLASLAAEAGA-QLLVADTDTER 210 (355)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHHHTTC-EEEEECSCHHH
T ss_pred CCCCCEEEEEC-cCHHHHHHHHHHHHCCC-EEEEEeCCccH
Confidence 57999999997 58999999999999997 88888887554
|
| >3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.014 Score=54.56 Aligned_cols=35 Identities=26% Similarity=0.417 Sum_probs=30.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEE-EEec
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHII-MACR 119 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi-~~~r 119 (350)
++++++++|+| .|.+|..+|+.|.+.|+ +|+ +.++
T Consensus 215 ~l~gk~vaVqG-~GnVG~~~a~~L~~~Ga-kVVavsD~ 250 (419)
T 3aoe_E 215 DLRGARVVVQG-LGQVGAAVALHAERLGM-RVVAVATS 250 (419)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHHTTC-EEEEEEET
T ss_pred CccCCEEEEEC-cCHHHHHHHHHHHHCCC-EEEEEEcC
Confidence 57899999998 78999999999999997 555 7777
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=94.42 E-value=0.036 Score=48.97 Aligned_cols=72 Identities=22% Similarity=0.329 Sum_probs=51.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++++++|.|+ |++|+++++.|.+.|+ .|++++|+.++.+++.+.+ + +.. ++ + +.+++
T Consensus 126 ~~~~~~v~iiGa-G~~g~aia~~L~~~g~-~V~v~~r~~~~~~~l~~~~---g--~~~--~~--~---~~~~~------- 184 (275)
T 2hk9_A 126 EVKEKSILVLGA-GGASRAVIYALVKEGA-KVFLWNRTKEKAIKLAQKF---P--LEV--VN--S---PEEVI------- 184 (275)
T ss_dssp TGGGSEEEEECC-SHHHHHHHHHHHHHTC-EEEEECSSHHHHHHHTTTS---C--EEE--CS--C---GGGTG-------
T ss_pred CcCCCEEEEECc-hHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHc---C--Cee--eh--h---HHhhh-------
Confidence 457889999996 7999999999999997 9999999987766554332 2 211 21 1 11111
Q ss_pred CCCcEEEEccccC
Q 018819 163 RPLDVLVCNAAVY 175 (350)
Q Consensus 163 g~id~lv~~Ag~~ 175 (350)
...|+||++....
T Consensus 185 ~~aDiVi~atp~~ 197 (275)
T 2hk9_A 185 DKVQVIVNTTSVG 197 (275)
T ss_dssp GGCSEEEECSSTT
T ss_pred cCCCEEEEeCCCC
Confidence 2589999998753
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=94.39 E-value=0.31 Score=42.36 Aligned_cols=88 Identities=16% Similarity=0.156 Sum_probs=56.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhc--------cCCCceEEEEccCCCHHHHHHHHHH
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG--------MAKENYTIMHLDLASLDSVRQFVDT 157 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~--------~~~~~v~~~~~Dvs~~~~v~~~~~~ 157 (350)
+.++.|.|+ |.+|..+++.|.+.|...|.+++|+.+..+...+.+. ..-.++.++..= .....+.+++++
T Consensus 10 ~m~i~iiG~-G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~a-v~~~~~~~v~~~ 87 (266)
T 3d1l_A 10 DTPIVLIGA-GNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVS-LKDSAFAELLQG 87 (266)
T ss_dssp GCCEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEEC-CCHHHHHHHHHH
T ss_pred CCeEEEEcC-CHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEe-cCHHHHHHHHHH
Confidence 346888886 8999999999999995338889999887777665431 000112222222 234466778877
Q ss_pred HHHcCCCCcEEEEccccC
Q 018819 158 FRRSGRPLDVLVCNAAVY 175 (350)
Q Consensus 158 ~~~~~g~id~lv~~Ag~~ 175 (350)
+.....+=.++|++....
T Consensus 88 l~~~~~~~~ivv~~s~~~ 105 (266)
T 3d1l_A 88 IVEGKREEALMVHTAGSI 105 (266)
T ss_dssp HHTTCCTTCEEEECCTTS
T ss_pred HHhhcCCCcEEEECCCCC
Confidence 765443334677777653
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=94.39 E-value=0.026 Score=50.85 Aligned_cols=83 Identities=17% Similarity=0.121 Sum_probs=54.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
++.+++++|.|++.-+|+.+|+.|+..|+ .|.+++|+..+..+..+++... ......+..++++++.+.+.
T Consensus 174 ~l~gk~vvVIG~G~iVG~~~A~~L~~~gA-tVtv~nR~~~~l~~ra~~la~~--~~~~t~~~~t~~~~L~e~l~------ 244 (320)
T 1edz_A 174 RLYGKKCIVINRSEIVGRPLAALLANDGA-TVYSVDVNNIQKFTRGESLKLN--KHHVEDLGEYSEDLLKKCSL------ 244 (320)
T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTSC-EEEEECSSEEEEEESCCCSSCC--CCEEEEEEECCHHHHHHHHH------
T ss_pred CCCCCEEEEECCCcchHHHHHHHHHHCCC-EEEEEeCchHHHHhHHHHHhhh--cccccccccccHhHHHHHhc------
Confidence 67899999999987789999999999997 8999988732211111111110 01111122244566666665
Q ss_pred CCCcEEEEccccC
Q 018819 163 RPLDVLVCNAAVY 175 (350)
Q Consensus 163 g~id~lv~~Ag~~ 175 (350)
.-|+||...|..
T Consensus 245 -~ADIVIsAtg~p 256 (320)
T 1edz_A 245 -DSDVVITGVPSE 256 (320)
T ss_dssp -HCSEEEECCCCT
T ss_pred -cCCEEEECCCCC
Confidence 479999998863
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=94.32 E-value=0.13 Score=48.33 Aligned_cols=71 Identities=10% Similarity=0.087 Sum_probs=52.1
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+.+++++++|.|+ |.+|+.+++.+.+.| .+|++++.+...... .+. -..+..|..|.+.+.++++
T Consensus 31 ~~~~~~~IlIlG~-G~lg~~~~~aa~~lG-~~v~v~d~~~~~p~~---~~a-----d~~~~~~~~d~~~l~~~a~----- 95 (419)
T 4e4t_A 31 PILPGAWLGMVGG-GQLGRMFCFAAQSMG-YRVAVLDPDPASPAG---AVA-----DRHLRAAYDDEAALAELAG----- 95 (419)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSCTTCHHH---HHS-----SEEECCCTTCHHHHHHHHH-----
T ss_pred cCCCCCEEEEECC-CHHHHHHHHHHHHCC-CEEEEECCCCcCchh---hhC-----CEEEECCcCCHHHHHHHHh-----
Confidence 4668999999986 579999999999999 488888765432111 111 1345689999998888773
Q ss_pred CCCCcEEE
Q 018819 162 GRPLDVLV 169 (350)
Q Consensus 162 ~g~id~lv 169 (350)
++|+++
T Consensus 96 --~~D~V~ 101 (419)
T 4e4t_A 96 --LCEAVS 101 (419)
T ss_dssp --HCSEEE
T ss_pred --cCCEEE
Confidence 488887
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=94.31 E-value=0.032 Score=50.54 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=47.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
++||+|++|++|...++.+...|+ +|+.++++.++.+.+ +++ |... . .|..+.+ .+.+.++ ..+++|+
T Consensus 153 ~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~-~~l---Ga~~-v--~~~~~~~--~~~~~~~--~~~~~d~ 220 (330)
T 1tt7_A 153 SVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYL-KQL---GASE-V--ISREDVY--DGTLKAL--SKQQWQG 220 (330)
T ss_dssp CEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHH-HHH---TCSE-E--EEHHHHC--SSCCCSS--CCCCEEE
T ss_pred eEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH-HHc---CCcE-E--EECCCch--HHHHHHh--hcCCccE
Confidence 799999999999999999989997 788888886665544 334 3222 2 2321110 0111111 1246999
Q ss_pred EEEccc
Q 018819 168 LVCNAA 173 (350)
Q Consensus 168 lv~~Ag 173 (350)
+|+++|
T Consensus 221 vid~~g 226 (330)
T 1tt7_A 221 AVDPVG 226 (330)
T ss_dssp EEESCC
T ss_pred EEECCc
Confidence 999987
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.069 Score=48.73 Aligned_cols=77 Identities=19% Similarity=0.199 Sum_probs=47.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.|.++||+|++|++|...++.....|+.+|+.+++ .++.+.+. + |... ++ | .+.+ +.+.+.++ ..++
T Consensus 142 ~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~~-~~~~~~~~--~---ga~~-~~--~-~~~~-~~~~~~~~--~~~g 208 (349)
T 4a27_A 142 EGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTAS-TFKHEAIK--D---SVTH-LF--D-RNAD-YVQEVKRI--SAEG 208 (349)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEEC-GGGHHHHG--G---GSSE-EE--E-TTSC-HHHHHHHH--CTTC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeCC-HHHHHHHH--c---CCcE-EE--c-CCcc-HHHHHHHh--cCCC
Confidence 57899999999999999888776666557877764 33433322 2 3322 22 3 2222 22222222 2347
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|.+.|.
T Consensus 209 ~Dvv~d~~g~ 218 (349)
T 4a27_A 209 VDIVLDCLCG 218 (349)
T ss_dssp EEEEEEECC-
T ss_pred ceEEEECCCc
Confidence 9999999875
|
| >1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.059 Score=50.83 Aligned_cols=36 Identities=33% Similarity=0.376 Sum_probs=31.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEec
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR 119 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r 119 (350)
.+.+..++|.|+ ||+|.++++.|+..|..++.+++.
T Consensus 37 ~L~~~~VlvvG~-GGlGs~va~~La~aGvg~i~ivD~ 72 (434)
T 1tt5_B 37 LLDTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDM 72 (434)
T ss_dssp HHHTCCEEEECS-STHHHHHHHHHHHTTCCCEEEEEC
T ss_pred HhcCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEcC
Confidence 346778999997 899999999999999888988864
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.24 E-value=0.095 Score=46.82 Aligned_cols=72 Identities=18% Similarity=0.343 Sum_probs=50.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+.+++++|.|+ |+||+.+++.|...|+ +|++++|+.++.+...+ + +. ..+. . +++++++
T Consensus 154 ~l~g~~v~IiG~-G~iG~~~a~~l~~~G~-~V~~~d~~~~~~~~~~~-~---g~--~~~~--~---~~l~~~l------- 213 (300)
T 2rir_A 154 TIHGSQVAVLGL-GRTGMTIARTFAALGA-NVKVGARSSAHLARITE-M---GL--VPFH--T---DELKEHV------- 213 (300)
T ss_dssp CSTTSEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH-T---TC--EEEE--G---GGHHHHS-------
T ss_pred CCCCCEEEEEcc-cHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH-C---CC--eEEc--h---hhHHHHh-------
Confidence 578999999996 8999999999999996 99999998765544322 1 22 2221 1 2233322
Q ss_pred CCCcEEEEcccc
Q 018819 163 RPLDVLVCNAAV 174 (350)
Q Consensus 163 g~id~lv~~Ag~ 174 (350)
...|+||++...
T Consensus 214 ~~aDvVi~~~p~ 225 (300)
T 2rir_A 214 KDIDICINTIPS 225 (300)
T ss_dssp TTCSEEEECCSS
T ss_pred hCCCEEEECCCh
Confidence 368999998764
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.19 Score=44.41 Aligned_cols=83 Identities=10% Similarity=0.225 Sum_probs=55.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCc---EEEEEecChhHHHHHHHHhcc----------CCCceEEEEccCCCHHHHHH
Q 018819 87 GSVIITGASSGLGLATAKALAETGKW---HIIMACRDFLKAERAAKSAGM----------AKENYTIMHLDLASLDSVRQ 153 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~---~Vi~~~r~~~~~~~~~~~l~~----------~~~~v~~~~~Dvs~~~~v~~ 153 (350)
+++.|.|+ |-+|.++++.|++.| . .|++++|+.++.+++.+.+.. ...++.++.+ .++.+.+
T Consensus 4 ~~I~iIG~-G~mG~aia~~l~~~g-~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav---~p~~~~~ 78 (280)
T 3tri_A 4 SNITFIGG-GNMARNIVVGLIANG-YDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAV---KPHQIKM 78 (280)
T ss_dssp SCEEEESC-SHHHHHHHHHHHHTT-CCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECS---CGGGHHH
T ss_pred CEEEEEcc-cHHHHHHHHHHHHCC-CCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEe---CHHHHHH
Confidence 46788887 899999999999999 5 799999998887777654310 1234444443 3456677
Q ss_pred HHHHHHHc-CCCCcEEEEcccc
Q 018819 154 FVDTFRRS-GRPLDVLVCNAAV 174 (350)
Q Consensus 154 ~~~~~~~~-~g~id~lv~~Ag~ 174 (350)
+++++... ..+=.++|++++.
T Consensus 79 vl~~l~~~~l~~~~iiiS~~ag 100 (280)
T 3tri_A 79 VCEELKDILSETKILVISLAVG 100 (280)
T ss_dssp HHHHHHHHHHTTTCEEEECCTT
T ss_pred HHHHHHhhccCCCeEEEEecCC
Confidence 77776554 3222267776543
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=94.19 E-value=0.067 Score=48.92 Aligned_cols=79 Identities=23% Similarity=0.282 Sum_probs=52.5
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC-------------------hhHHHHHHHHhccC--CCceEEE
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD-------------------FLKAERAAKSAGMA--KENYTIM 141 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~-------------------~~~~~~~~~~l~~~--~~~v~~~ 141 (350)
.+.+.+++|.|+ ||+|.++++.|+..|..++.+++.+ ..+.+.+.+.+... ..++..+
T Consensus 33 ~L~~~~VlivG~-GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~ 111 (346)
T 1y8q_A 33 RLRASRVLLVGL-KGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVD 111 (346)
T ss_dssp HHHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEE
T ss_pred HHhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEE
Confidence 456779999996 7999999999999998899888542 13455555555443 3455666
Q ss_pred EccCCCHHHHHHHHHHHHHcCCCCcEEEEc
Q 018819 142 HLDLASLDSVRQFVDTFRRSGRPLDVLVCN 171 (350)
Q Consensus 142 ~~Dvs~~~~v~~~~~~~~~~~g~id~lv~~ 171 (350)
..++++ ...+++ ...|+||.+
T Consensus 112 ~~~~~~--~~~~~~-------~~~dvVv~~ 132 (346)
T 1y8q_A 112 TEDIEK--KPESFF-------TQFDAVCLT 132 (346)
T ss_dssp CSCGGG--CCHHHH-------TTCSEEEEE
T ss_pred ecccCc--chHHHh-------cCCCEEEEc
Confidence 555543 112222 257888765
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=94.11 E-value=0.063 Score=47.39 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=33.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
.++||+++|.|.++-+|+.+|..|...|| .|.++.|.
T Consensus 157 ~l~Gk~vvVvGrs~iVG~p~A~lL~~~gA-tVtv~h~~ 193 (285)
T 3p2o_A 157 DLEGKDAVIIGASNIVGRPMATMLLNAGA-TVSVCHIK 193 (285)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTT
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCC
Confidence 57899999999998899999999999997 78888664
|
| >1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A | Back alignment and structure |
|---|
Probab=94.11 E-value=0.074 Score=52.44 Aligned_cols=37 Identities=35% Similarity=0.469 Sum_probs=32.4
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
.|.+..|+|.|+ ||||..+++.|+..|..++.+++.+
T Consensus 14 kL~~s~VlVVGa-GGLGsevak~La~aGVG~ItlvD~D 50 (640)
T 1y8q_B 14 AVAGGRVLVVGA-GGIGCELLKNLVLTGFSHIDLIDLD 50 (640)
T ss_dssp HHHHCEEEEECC-SHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred HHhcCeEEEECc-CHHHHHHHHHHHHcCCCeEEEecCC
Confidence 456778999997 8999999999999998899998864
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=94.06 E-value=0.11 Score=46.21 Aligned_cols=43 Identities=21% Similarity=0.366 Sum_probs=37.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA 127 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~ 127 (350)
.+.+++++|.|. |+||+.+++.|...|+ +|++++|+.++.+..
T Consensus 152 ~l~g~~v~IiG~-G~iG~~~a~~l~~~G~-~V~~~dr~~~~~~~~ 194 (293)
T 3d4o_A 152 TIHGANVAVLGL-GRVGMSVARKFAALGA-KVKVGARESDLLARI 194 (293)
T ss_dssp CSTTCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred CCCCCEEEEEee-CHHHHHHHHHHHhCCC-EEEEEECCHHHHHHH
Confidence 578999999995 8999999999999996 999999987654433
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=0.49 Score=42.75 Aligned_cols=114 Identities=17% Similarity=0.062 Sum_probs=66.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcC-CcEEEEEecChhHHHHHHHHhccC---CCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 86 KGSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMA---KENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~G-a~~Vi~~~r~~~~~~~~~~~l~~~---~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
...+.|+|+ |.+|..++..|+..+ +..|++++++.++++....++... ...+.+.. | +.++
T Consensus 9 ~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~-~--~~~a----------- 73 (326)
T 2zqz_A 9 HQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYS-A--EYSD----------- 73 (326)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE-C--CGGG-----------
T ss_pred CCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEE-C--CHHH-----------
Confidence 357999998 999999999999877 347999999887776655544321 12333332 2 2111
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEec
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS 226 (350)
+..-|++|..+|..... .++..+ .+..|+.-...+.+.+ .+.. +.+.||++|-
T Consensus 74 ~~~aDvVii~ag~~~k~----g~~R~d---l~~~n~~i~~~i~~~i----~~~~-p~a~iiv~tN 126 (326)
T 2zqz_A 74 AKDADLVVITAGAPQKP----GETRLD---LVNKNLKILKSIVDPI----VDSG-FNGIFLVAAN 126 (326)
T ss_dssp GGGCSEEEECCCCC---------CHHH---HHHHHHHHHHHHHHHH----HHHT-CCSEEEECSS
T ss_pred hCCCCEEEEcCCCCCCC----CCCHHH---HHHHHHHHHHHHHHHH----HHHC-CCeEEEEeCC
Confidence 23689999999975321 233332 3445544443344433 3322 2467777643
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=93.96 E-value=0.12 Score=45.61 Aligned_cols=85 Identities=19% Similarity=0.074 Sum_probs=55.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHh-c------cCCCceEEEEccCCCHHHHHHHH---H
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA-G------MAKENYTIMHLDLASLDSVRQFV---D 156 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l-~------~~~~~v~~~~~Dvs~~~~v~~~~---~ 156 (350)
+++.|.|. |.+|..+++.|++.| +.|++.+|+.++.+.+.+.- . +.-.+..++..=+.+...++.++ +
T Consensus 2 ~~i~iIG~-G~mG~~~a~~l~~~G-~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~ 79 (287)
T 3pef_A 2 QKFGFIGL-GIMGSAMAKNLVKAG-CSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKH 79 (287)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTT
T ss_pred CEEEEEee-cHHHHHHHHHHHHCC-CeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcc
Confidence 36778875 899999999999999 69999999987766554320 0 00001233334455667777777 6
Q ss_pred HHHHcCCCCcEEEEccc
Q 018819 157 TFRRSGRPLDVLVCNAA 173 (350)
Q Consensus 157 ~~~~~~g~id~lv~~Ag 173 (350)
.+.....+=.++|++..
T Consensus 80 ~l~~~l~~~~~vi~~st 96 (287)
T 3pef_A 80 GVLEGIGEGRGYVDMST 96 (287)
T ss_dssp CHHHHCCTTCEEEECSC
T ss_pred hHhhcCCCCCEEEeCCC
Confidence 66554444456676644
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=93.95 E-value=0.092 Score=45.90 Aligned_cols=69 Identities=29% Similarity=0.334 Sum_probs=51.4
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++ +++|.|+ |++|+++++.|.+.|+ +|.+++|+.++.+++.+.+.. . . .+.+ ++
T Consensus 114 ~l~~-~v~iiG~-G~~g~~~a~~l~~~g~-~v~v~~r~~~~~~~l~~~~~~-----~---~--~~~~---~~-------- 169 (263)
T 2d5c_A 114 PLKG-PALVLGA-GGAGRAVAFALREAGL-EVWVWNRTPQRALALAEEFGL-----R---A--VPLE---KA-------- 169 (263)
T ss_dssp CCCS-CEEEECC-SHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHHTC-----E---E--CCGG---GG--------
T ss_pred CCCC-eEEEECC-cHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcc-----c---h--hhHh---hc--------
Confidence 4678 8999996 7899999999999997 899999998877777665531 1 1 1221 11
Q ss_pred CCCcEEEEccccC
Q 018819 163 RPLDVLVCNAAVY 175 (350)
Q Consensus 163 g~id~lv~~Ag~~ 175 (350)
...|+||++....
T Consensus 170 ~~~Divi~~tp~~ 182 (263)
T 2d5c_A 170 REARLLVNATRVG 182 (263)
T ss_dssp GGCSEEEECSSTT
T ss_pred cCCCEEEEccCCC
Confidence 2589999998763
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=93.92 E-value=0.49 Score=42.24 Aligned_cols=72 Identities=21% Similarity=0.212 Sum_probs=46.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCc--EEEEEecChhHHHHHHHHhccCC---CceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 88 SVIITGASSGLGLATAKALAETGKW--HIIMACRDFLKAERAAKSAGMAK---ENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~--~Vi~~~r~~~~~~~~~~~l~~~~---~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+.|+|+ |.+|..++..|+..| . .|++.+++.++++.....+.... ....+.. ++.+ ..
T Consensus 2 kI~VIGa-G~vG~~la~~la~~g-~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~---~~~~-----------a~ 65 (304)
T 2v6b_A 2 KVGVVGT-GFVGSTAAFALVLRG-SCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWH---GGHS-----------EL 65 (304)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTT-CCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEE---ECGG-----------GG
T ss_pred EEEEECC-CHHHHHHHHHHHhCC-CCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEE---CCHH-----------Hh
Confidence 5789998 999999999999998 5 89999999876655444443211 1222221 1211 12
Q ss_pred CCCcEEEEccccC
Q 018819 163 RPLDVLVCNAAVY 175 (350)
Q Consensus 163 g~id~lv~~Ag~~ 175 (350)
...|++|.++|..
T Consensus 66 ~~aDvVIi~~~~~ 78 (304)
T 2v6b_A 66 ADAQVVILTAGAN 78 (304)
T ss_dssp TTCSEEEECC---
T ss_pred CCCCEEEEcCCCC
Confidence 3689999999874
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=93.85 E-value=0.32 Score=43.24 Aligned_cols=112 Identities=13% Similarity=0.055 Sum_probs=67.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHcC-CcEEEEEecChhHHHHHHHHhcc----CCCceEEEEc-cCCCHHHHHHHHHHHHHc
Q 018819 88 SVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGM----AKENYTIMHL-DLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~G-a~~Vi~~~r~~~~~~~~~~~l~~----~~~~v~~~~~-Dvs~~~~v~~~~~~~~~~ 161 (350)
.+.|+|+ |+||..+|..|+.++ +..+++++.+++..+-...++.+ .+........ |. ++
T Consensus 2 KV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~---~~----------- 66 (294)
T 2x0j_A 2 KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY---SL----------- 66 (294)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCG---GG-----------
T ss_pred EEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCH---HH-----------
Confidence 4678895 999999999998887 46899999987655444444432 1222233322 32 21
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEec
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS 226 (350)
...-|++|..||..+.+ .++.++ .++.|.. +.+.+.+.+.+.. +.+.++.+|-
T Consensus 67 ~~~aDvVvitAG~prkp----GmtR~d---Ll~~Na~----I~~~i~~~i~~~~-p~aivlvvsN 119 (294)
T 2x0j_A 67 LKGSEIIVVTAGLARKP----GMTRLD---LAHKNAG----IIKDIAKKIVENA-PESKILVVTN 119 (294)
T ss_dssp GTTCSEEEECCCCCCCS----SSCHHH---HHHHHHH----HHHHHHHHHHTTS-TTCEEEECSS
T ss_pred hCCCCEEEEecCCCCCC----CCchHH---HHHHHHH----HHHHHHHHHHhcC-CceEEEEecC
Confidence 23689999999985432 345554 4556654 4445555554443 2455665543
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=93.84 E-value=0.14 Score=45.58 Aligned_cols=85 Identities=14% Similarity=0.153 Sum_probs=57.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHH-h------ccCCCceEEEEccCCCHHHHHHHHHHHH
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS-A------GMAKENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~-l------~~~~~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
+++.|.| .|-+|..+|+.|++.| +.|++.+|+.++.+.+.+. + .+.-. ..++..=+.+...++.+++.+.
T Consensus 16 ~~I~vIG-~G~mG~~~A~~l~~~G-~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~~~l~ 92 (296)
T 3qha_A 16 LKLGYIG-LGNMGAPMATRMTEWP-GGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVVGELA 92 (296)
T ss_dssp CCEEEEC-CSTTHHHHHHHHTTST-TCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHHHHHH
T ss_pred CeEEEEC-cCHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHHHHHH
Confidence 4577777 5899999999999999 5899999998766655432 0 00001 2344445666778888888877
Q ss_pred HcCCCCcEEEEcccc
Q 018819 160 RSGRPLDVLVCNAAV 174 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~ 174 (350)
....+=.++|++..+
T Consensus 93 ~~l~~g~ivv~~st~ 107 (296)
T 3qha_A 93 GHAKPGTVIAIHSTI 107 (296)
T ss_dssp TTCCTTCEEEECSCC
T ss_pred HhcCCCCEEEEeCCC
Confidence 655555677776543
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=93.82 E-value=0.17 Score=43.78 Aligned_cols=76 Identities=13% Similarity=0.125 Sum_probs=53.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHc-CCcEEEE-EecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 88 SVIITGASSGLGLATAKALAET-GKWHIIM-ACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~-Ga~~Vi~-~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
.++|.|++|.+|+.+++.+.+. +. .|+. ++++ ..+++... .+ .. +.+|+|.++.+...+..+.+. ++
T Consensus 2 kV~V~Ga~G~mG~~i~~~~~~~~~~-elva~~d~~-~dl~~~~~----~~--~D-vvIDfT~p~a~~~~~~~a~~~--g~ 70 (245)
T 1p9l_A 2 RVGVLGAKGKVGTTMVRAVAAADDL-TLSAELDAG-DPLSLLTD----GN--TE-VVIDFTHPDVVMGNLEFLIDN--GI 70 (245)
T ss_dssp EEEEETTTSHHHHHHHHHHHHCTTC-EEEEEECTT-CCTHHHHH----TT--CC-EEEECSCTTTHHHHHHHHHHT--TC
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEccC-CCHHHHhc----cC--Cc-EEEEccChHHHHHHHHHHHHc--CC
Confidence 5899999999999999999876 74 6554 4443 23333222 11 22 467999999998888887765 58
Q ss_pred cEEEEcccc
Q 018819 166 DVLVCNAAV 174 (350)
Q Consensus 166 d~lv~~Ag~ 174 (350)
++||-..|.
T Consensus 71 ~~VigTTG~ 79 (245)
T 1p9l_A 71 HAVVGTTGF 79 (245)
T ss_dssp EEEECCCCC
T ss_pred CEEEcCCCC
Confidence 888866653
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=93.80 E-value=0.31 Score=44.96 Aligned_cols=65 Identities=11% Similarity=0.078 Sum_probs=47.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDT 157 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~ 157 (350)
.+.+++++|.|+ |.+|+.+++.+.+.|. +|++++.+..... ..+ .-.++..|..|.+.+.++++.
T Consensus 9 ~~~~~~IlIlG~-G~lg~~la~aa~~lG~-~viv~d~~~~~p~---~~~-----ad~~~~~~~~d~~~l~~~~~~ 73 (377)
T 3orq_A 9 LKFGATIGIIGG-GQLGKMMAQSAQKMGY-KVVVLDPSEDCPC---RYV-----AHEFIQAKYDDEKALNQLGQK 73 (377)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESCTTCTT---GGG-----SSEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEECCCCChh---hhh-----CCEEEECCCCCHHHHHHHHHh
Confidence 457889999996 6899999999999994 8888877543110 011 113566899999988887753
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=93.76 E-value=0.19 Score=45.25 Aligned_cols=102 Identities=16% Similarity=0.033 Sum_probs=56.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcC-CcEEEEEecChhHHHHHHHHhccCC---CceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 87 GSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAK---ENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~G-a~~Vi~~~r~~~~~~~~~~~l~~~~---~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
..+.|+|+ |.+|..++..|+..| ...|++++.+.++++....++.... ..+.+. . .+.+ .+
T Consensus 8 ~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~-~--~~~~-----------a~ 72 (318)
T 1y6j_A 8 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLY-A--GDYS-----------DV 72 (318)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC-----CGG-----------GG
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEE-E--CCHH-----------Hh
Confidence 36888898 999999999999987 2379999998766554444443221 122221 1 1211 12
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHH
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDD 210 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~ 210 (350)
..-|++|..+|.... + ..+.. ..+..|+.-...+.+.+.++
T Consensus 73 ~~aDvVii~~g~p~k--~--g~~r~---dl~~~n~~i~~~i~~~i~~~ 113 (318)
T 1y6j_A 73 KDCDVIVVTAGANRK--P--GETRL---DLAKKNVMIAKEVTQNIMKY 113 (318)
T ss_dssp TTCSEEEECCCC----------CHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEcCCCCCC--C--CcCHH---HHHHhhHHHHHHHHHHHHHh
Confidence 478999999997432 1 22332 23555555444455544433
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=93.70 E-value=0.19 Score=57.60 Aligned_cols=81 Identities=17% Similarity=0.174 Sum_probs=53.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc--C
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS--G 162 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~--~ 162 (350)
+|.++||.||+||+|...++.....|+ +|+++.++.++.+.+.+.+...+... + .|..+.+- .+.+.+. .
T Consensus 1667 ~Ge~VLI~gaaGgVG~aAiqlAk~~Ga-~Viat~~s~~k~~~l~~~~~~lga~~-v--~~~~~~~~----~~~i~~~t~g 1738 (2512)
T 2vz8_A 1667 PGESVLIHSGSGGVGQAAIAIALSRGC-RVFTTVGSAEKRAYLQARFPQLDETC-F--ANSRDTSF----EQHVLRHTAG 1738 (2512)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTCCSTT-E--EESSSSHH----HHHHHHTTTS
T ss_pred CCCEEEEEeCChHHHHHHHHHHHHcCC-EEEEEeCChhhhHHHHhhcCCCCceE-E--ecCCCHHH----HHHHHHhcCC
Confidence 588999999999999999988888997 88888888777665555432223222 1 23333332 2233332 2
Q ss_pred CCCcEEEEccc
Q 018819 163 RPLDVLVCNAA 173 (350)
Q Consensus 163 g~id~lv~~Ag 173 (350)
.++|+++++.|
T Consensus 1739 ~GvDvVld~~g 1749 (2512)
T 2vz8_A 1739 KGVDLVLNSLA 1749 (2512)
T ss_dssp CCEEEEEECCC
T ss_pred CCceEEEECCC
Confidence 35899988764
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=93.69 E-value=0.23 Score=44.24 Aligned_cols=80 Identities=16% Similarity=0.181 Sum_probs=51.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
+++.|.||.|.||.++++.|.+.| ..|++++|+.+.. ..+.+. ..++.++.+-.. .+.++++++.....+=.
T Consensus 22 ~~I~iIGg~G~mG~~la~~l~~~G-~~V~~~~~~~~~~--~~~~~~--~aDvVilavp~~---~~~~vl~~l~~~l~~~~ 93 (298)
T 2pv7_A 22 HKIVIVGGYGKLGGLFARYLRASG-YPISILDREDWAV--AESILA--NADVVIVSVPIN---LTLETIERLKPYLTENM 93 (298)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTTT-CCEEEECTTCGGG--HHHHHT--TCSEEEECSCGG---GHHHHHHHHGGGCCTTS
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC-CeEEEEECCcccC--HHHHhc--CCCEEEEeCCHH---HHHHHHHHHHhhcCCCc
Confidence 468899999999999999999999 5899999875431 111222 345655554332 36667777654443223
Q ss_pred EEEEcccc
Q 018819 167 VLVCNAAV 174 (350)
Q Consensus 167 ~lv~~Ag~ 174 (350)
+|++.+++
T Consensus 94 iv~~~~sv 101 (298)
T 2pv7_A 94 LLADLTSV 101 (298)
T ss_dssp EEEECCSC
T ss_pred EEEECCCC
Confidence 55555443
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=93.59 E-value=0.31 Score=40.85 Aligned_cols=75 Identities=11% Similarity=0.142 Sum_probs=49.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
+..+++.|.| .|.+|.++++.|++.| ..|++.+|+.+ .....++.++.+- ...++++++++.....
T Consensus 17 ~~~~~I~iiG-~G~mG~~la~~l~~~g-~~V~~~~~~~~---------~~~~aD~vi~av~---~~~~~~v~~~l~~~~~ 82 (209)
T 2raf_A 17 FQGMEITIFG-KGNMGQAIGHNFEIAG-HEVTYYGSKDQ---------ATTLGEIVIMAVP---YPALAALAKQYATQLK 82 (209)
T ss_dssp ---CEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECTTCC---------CSSCCSEEEECSC---HHHHHHHHHHTHHHHT
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHCC-CEEEEEcCCHH---------HhccCCEEEEcCC---cHHHHHHHHHHHHhcC
Confidence 4556899999 6899999999999999 58999998865 1123455554433 5667777777654333
Q ss_pred CCcEEEEccc
Q 018819 164 PLDVLVCNAA 173 (350)
Q Consensus 164 ~id~lv~~Ag 173 (350)
=.++|+++.
T Consensus 83 -~~~vi~~~~ 91 (209)
T 2raf_A 83 -GKIVVDITN 91 (209)
T ss_dssp -TSEEEECCC
T ss_pred -CCEEEEECC
Confidence 235565543
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=93.54 E-value=0.11 Score=47.23 Aligned_cols=75 Identities=12% Similarity=-0.001 Sum_probs=49.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhcc------CCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM------AKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~------~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
..+.|+|+ |.+|..+|..|+..|...|++.+++++.++.....+.. ...++.+. +|.+ +.++
T Consensus 10 ~kI~VIGa-G~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t----~d~~---ea~~---- 77 (331)
T 1pzg_A 10 KKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAE----YSYE---AALT---- 77 (331)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEE----CSHH---HHHT----
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEe----CCHH---HHhC----
Confidence 47899998 99999999999999942699999987666553322211 11222221 3332 1222
Q ss_pred cCCCCcEEEEccccCC
Q 018819 161 SGRPLDVLVCNAAVYL 176 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~ 176 (350)
.-|++|..+|...
T Consensus 78 ---~aDiVi~a~g~p~ 90 (331)
T 1pzg_A 78 ---GADCVIVTAGLTK 90 (331)
T ss_dssp ---TCSEEEECCSCSS
T ss_pred ---CCCEEEEccCCCC
Confidence 6899999998753
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=93.50 E-value=0.13 Score=45.22 Aligned_cols=36 Identities=14% Similarity=0.166 Sum_probs=32.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
+.||+++|.|.++-+|+.+|+.|.+.|| +|.++.+.
T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~gA-tVtv~~~~ 183 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNRNY-TVSVCHSK 183 (276)
T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTT
T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 7899999999998899999999999997 88887653
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=93.45 E-value=0.23 Score=44.66 Aligned_cols=86 Identities=20% Similarity=0.215 Sum_probs=55.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHH-h------ccCCCceEEEEccCCCHHHHHHHHH--
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS-A------GMAKENYTIMHLDLASLDSVRQFVD-- 156 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~-l------~~~~~~v~~~~~Dvs~~~~v~~~~~-- 156 (350)
.+++.|.|. |.+|..+++.|++.| +.|++.+|+.++.+++.+. + .+.-.+..++..=+.+...++.++.
T Consensus 31 ~~~I~iIG~-G~mG~~~a~~l~~~G-~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~ 108 (320)
T 4dll_A 31 ARKITFLGT-GSMGLPMARRLCEAG-YALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFAQ 108 (320)
T ss_dssp CSEEEEECC-TTTHHHHHHHHHHTT-CEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTTT
T ss_pred CCEEEEECc-cHHHHHHHHHHHhCC-CeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcch
Confidence 457888865 899999999999999 5999999998776665432 0 0000112333344556667777765
Q ss_pred HHHHcCCCCcEEEEccc
Q 018819 157 TFRRSGRPLDVLVCNAA 173 (350)
Q Consensus 157 ~~~~~~g~id~lv~~Ag 173 (350)
.+.....+-.++|++..
T Consensus 109 ~~~~~l~~~~~vi~~st 125 (320)
T 4dll_A 109 GVAAAMKPGSLFLDMAS 125 (320)
T ss_dssp CHHHHCCTTCEEEECSC
T ss_pred hHHhhCCCCCEEEecCC
Confidence 55544444456666654
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=93.39 E-value=0.6 Score=41.97 Aligned_cols=113 Identities=14% Similarity=0.104 Sum_probs=64.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcC-CcEEEEEecChhHHHHHHHHhccC---CCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 87 GSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMA---KENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~G-a~~Vi~~~r~~~~~~~~~~~l~~~---~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
..+.|+|+ |.+|..++..|+..+ +..|++++++.++++....++... ...+.+.. | +.+ .+
T Consensus 6 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~-~--~~~-----------a~ 70 (318)
T 1ez4_A 6 QKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS-G--EYS-----------DC 70 (318)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE-C--CGG-----------GG
T ss_pred CEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEE-C--CHH-----------Hh
Confidence 47999998 999999999999877 347999999887776544444321 12333332 2 211 12
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEec
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS 226 (350)
..-|++|..+|.....+ ++.. ..+..|.. +.+.+.+.+.+.. +.+.||++|-
T Consensus 71 ~~aDvVii~ag~~~~~g----~~R~---dl~~~n~~----i~~~i~~~i~~~~-p~a~iiv~tN 122 (318)
T 1ez4_A 71 KDADLVVITAGAPQKPG----ESRL---DLVNKNLN----ILSSIVKPVVDSG-FDGIFLVAAN 122 (318)
T ss_dssp TTCSEEEECCCC-----------------CHHHHHH----HHHHHHHHHHHTT-CCSEEEECSS
T ss_pred CCCCEEEECCCCCCCCC----CCHH---HHHHHHHH----HHHHHHHHHHHhC-CCeEEEEeCC
Confidence 37899999999753211 1221 23344433 3344444444433 2467777643
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=93.34 E-value=1.1 Score=40.04 Aligned_cols=113 Identities=20% Similarity=0.087 Sum_probs=68.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHcC-CcEEEEEecChhHHHHHHHHhccC---CCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 88 SVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMA---KENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~G-a~~Vi~~~r~~~~~~~~~~~l~~~---~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
.+.|+|+ |.+|..++..|+..+ +..|++++++.++++....++... ...+.+.. | +.++ +.
T Consensus 2 KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~-~--~~~a-----------~~ 66 (310)
T 2xxj_A 2 KVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWA-G--SYGD-----------LE 66 (310)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEE-C--CGGG-----------GT
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEE-C--CHHH-----------hC
Confidence 5889998 999999999999876 347999999987776555555321 12233332 2 2221 23
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEecc
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 227 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~ 227 (350)
.-|++|..+|..... .++..+ .+..|..-...+.+. +.+.. +.+.||++|-.
T Consensus 67 ~aD~Vii~ag~~~~~----g~~r~d---l~~~n~~i~~~i~~~----i~~~~-p~a~iiv~tNP 118 (310)
T 2xxj_A 67 GARAVVLAAGVAQRP----GETRLQ---LLDRNAQVFAQVVPR----VLEAA-PEAVLLVATNP 118 (310)
T ss_dssp TEEEEEECCCCCCCT----TCCHHH---HHHHHHHHHHHHHHH----HHHHC-TTCEEEECSSS
T ss_pred CCCEEEECCCCCCCC----CcCHHH---HHHhhHHHHHHHHHH----HHHHC-CCcEEEEecCc
Confidence 689999999985332 234433 344554444334443 33332 24677776543
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=93.19 E-value=0.36 Score=42.98 Aligned_cols=85 Identities=14% Similarity=0.111 Sum_probs=54.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHh-----c---cCCCceEEEEccCCCHHHHHHHH---
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA-----G---MAKENYTIMHLDLASLDSVRQFV--- 155 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l-----~---~~~~~v~~~~~Dvs~~~~v~~~~--- 155 (350)
+++.|.| .|.+|..+++.|++.| +.|++.+|+.+..+.+.+.- . +.-....++..=+.+...++.++
T Consensus 8 ~~I~iIG-~G~mG~~~a~~l~~~G-~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~ 85 (303)
T 3g0o_A 8 FHVGIVG-LGSMGMGAARSCLRAG-LSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGE 85 (303)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--
T ss_pred CeEEEEC-CCHHHHHHHHHHHHCC-CeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhCh
Confidence 4677776 5899999999999999 59999999988777665420 0 00012334444455666666665
Q ss_pred HHHHHcCCCCcEEEEccc
Q 018819 156 DTFRRSGRPLDVLVCNAA 173 (350)
Q Consensus 156 ~~~~~~~g~id~lv~~Ag 173 (350)
+.+.....+=.++|++..
T Consensus 86 ~~l~~~l~~g~ivv~~st 103 (303)
T 3g0o_A 86 DGVAHLMKPGSAVMVSST 103 (303)
T ss_dssp CCCGGGSCTTCEEEECSC
T ss_pred hhHHhhCCCCCEEEecCC
Confidence 444443333456666654
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=93.18 E-value=0.61 Score=41.87 Aligned_cols=114 Identities=13% Similarity=0.137 Sum_probs=64.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC-cEEEEEecChhHHHHHHHHhcc----CCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 88 SVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGM----AKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga-~~Vi~~~r~~~~~~~~~~~l~~----~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+.|+|+ |.+|..++..|+..|. ..|++++++.++++....++.. .+....+...| +. +.+
T Consensus 2 kv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~--~~-----------~a~ 67 (314)
T 3nep_X 2 KVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTN--DY-----------GPT 67 (314)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEES--SS-----------GGG
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECC--CH-----------HHh
Confidence 5788996 9999999999999883 3899999987665543333321 11122222122 11 122
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEecc
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 227 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~ 227 (350)
..-|++|.++|..... .++. ...++.|.. +.+.+.+.+.+.. +.+.++++|-.
T Consensus 68 ~~aDvVii~ag~~~kp----G~~R---~dl~~~N~~----i~~~i~~~i~~~~-p~a~vivvtNP 120 (314)
T 3nep_X 68 EDSDVCIITAGLPRSP----GMSR---DDLLAKNTE----IVGGVTEQFVEGS-PDSTIIVVANP 120 (314)
T ss_dssp TTCSEEEECCCC-----------C---HHHHHHHHH----HHHHHHHHHHTTC-TTCEEEECCSS
T ss_pred CCCCEEEECCCCCCCC----CCCH---HHHHHhhHH----HHHHHHHHHHHhC-CCcEEEecCCc
Confidence 3689999999985321 1222 233455543 3444555555443 35677777643
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=93.15 E-value=1.4 Score=39.37 Aligned_cols=75 Identities=25% Similarity=0.231 Sum_probs=49.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcC-CcEEEEEecChhHHHHHHHHhcc----CCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 87 GSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGM----AKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~G-a~~Vi~~~r~~~~~~~~~~~l~~----~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+.+.|+|+ |.+|..++..|+..| +..|++.+++.+..+.....+.. .+..+.+.. | +.+ .
T Consensus 7 ~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~-~--~~~-----------a 71 (316)
T 1ldn_A 7 ARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH-G--DYD-----------D 71 (316)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE-C--CGG-----------G
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEc-C--cHH-----------H
Confidence 47999998 999999999998877 34899999987655443333321 111333332 1 211 1
Q ss_pred CCCCcEEEEccccCC
Q 018819 162 GRPLDVLVCNAAVYL 176 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~ 176 (350)
+...|++|.++|+..
T Consensus 72 l~~aDvViia~~~~~ 86 (316)
T 1ldn_A 72 CRDADLVVICAGANQ 86 (316)
T ss_dssp TTTCSEEEECCSCCC
T ss_pred hCCCCEEEEcCCCCC
Confidence 336899999999854
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=93.07 E-value=0.77 Score=40.07 Aligned_cols=80 Identities=14% Similarity=0.190 Sum_probs=50.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhcc-----------CCCceEEEEccCCCHHHHHHHHH
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-----------AKENYTIMHLDLASLDSVRQFVD 156 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~-----------~~~~v~~~~~Dvs~~~~v~~~~~ 156 (350)
++.|.| .|.+|.++++.|.+.| ..|++++|+.+..+...+ ... .+.++.++. ..+..+..+++
T Consensus 2 ~i~iiG-~G~~G~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~D~vi~a---v~~~~~~~~~~ 75 (279)
T 2f1k_A 2 KIGVVG-LGLIGASLAGDLRRRG-HYLIGVSRQQSTCEKAVE-RQLVDEAGQDLSLLQTAKIIFLC---TPIQLILPTLE 75 (279)
T ss_dssp EEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHH-TTSCSEEESCGGGGTTCSEEEEC---SCHHHHHHHHH
T ss_pred EEEEEc-CcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHh-CCCCccccCCHHHhCCCCEEEEE---CCHHHHHHHHH
Confidence 578888 5999999999999999 489999999877665532 110 111222221 23456677777
Q ss_pred HHHHcCCCCcEEEEccc
Q 018819 157 TFRRSGRPLDVLVCNAA 173 (350)
Q Consensus 157 ~~~~~~g~id~lv~~Ag 173 (350)
++.....+=.++|+.++
T Consensus 76 ~l~~~~~~~~~vv~~~~ 92 (279)
T 2f1k_A 76 KLIPHLSPTAIVTDVAS 92 (279)
T ss_dssp HHGGGSCTTCEEEECCS
T ss_pred HHHhhCCCCCEEEECCC
Confidence 76554433335555433
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=93.05 E-value=0.41 Score=43.29 Aligned_cols=76 Identities=12% Similarity=0.055 Sum_probs=50.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC-cEEEEEecChhHHHHHHHHhccC---CCceEEE-EccCCCHHHHHHHHHHHHH
Q 018819 86 KGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMA---KENYTIM-HLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga-~~Vi~~~r~~~~~~~~~~~l~~~---~~~v~~~-~~Dvs~~~~v~~~~~~~~~ 160 (350)
.+.+.|+|+ |.+|..+|..|+..|. ..|++.+.+.+..+....++... ....... ..|..+
T Consensus 21 ~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~------------- 86 (330)
T 3ldh_A 21 YNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV------------- 86 (330)
T ss_dssp CCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-------------
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-------------
Confidence 457899998 9999999999999883 37999999877665544433211 1111122 223321
Q ss_pred cCCCCcEEEEccccCC
Q 018819 161 SGRPLDVLVCNAAVYL 176 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~ 176 (350)
+..-|++|..||...
T Consensus 87 -~~daDiVIitaG~p~ 101 (330)
T 3ldh_A 87 -SAGSKLVVITAGARQ 101 (330)
T ss_dssp -CSSCSEEEECCSCCC
T ss_pred -hCCCCEEEEeCCCCC
Confidence 236899999999854
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=93.04 E-value=0.068 Score=54.56 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=48.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+|.++||.||+||+|...++.....|+ +|+.+.++. +.+ .+. .+.... .|..+.+-.+.+ .+.. ...+
T Consensus 345 ~G~~VLI~gaaGgvG~~aiqlAk~~Ga-~V~~t~~~~-k~~----~l~-lga~~v---~~~~~~~~~~~i-~~~t-~g~G 412 (795)
T 3slk_A 345 PGESLLVHSAAGGVGMAAIQLARHLGA-EVYATASED-KWQ----AVE-LSREHL---ASSRTCDFEQQF-LGAT-GGRG 412 (795)
T ss_dssp TTCCEEEESTTBHHHHHHHHHHHHTTC-CEEEECCGG-GGG----GSC-SCGGGE---ECSSSSTHHHHH-HHHS-CSSC
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHcCC-EEEEEeChH-Hhh----hhh-cChhhe---eecCChhHHHHH-HHHc-CCCC
Confidence 588999999999999999998888998 788887654 221 111 333322 233333222222 2221 1236
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|+++++.|.
T Consensus 413 vDvVld~~gg 422 (795)
T 3slk_A 413 VDVVLNSLAG 422 (795)
T ss_dssp CSEEEECCCT
T ss_pred eEEEEECCCc
Confidence 9999998764
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=92.94 E-value=0.15 Score=44.93 Aligned_cols=37 Identities=24% Similarity=0.220 Sum_probs=32.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
.+.||.++|.|.++-+|+.+|..|...|| .|.++.+.
T Consensus 158 ~l~Gk~vvVvGrs~iVG~plA~lL~~~gA-tVtv~hs~ 194 (286)
T 4a5o_A 158 DLYGMDAVVVGASNIVGRPMALELLLGGC-TVTVTHRF 194 (286)
T ss_dssp CCTTCEEEEECTTSTTHHHHHHHHHHTTC-EEEEECTT
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCC
Confidence 57899999999988899999999999997 88877653
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=92.93 E-value=0.19 Score=44.71 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=33.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
.++||.++|.|.++-+|+.+|..|.+.|| .|.++.|.
T Consensus 162 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~~~~ 198 (300)
T 4a26_A 162 EMAGKRAVVLGRSNIVGAPVAALLMKENA-TVTIVHSG 198 (300)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTT
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCC
Confidence 57899999999988899999999999997 88888764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 350 | ||||
| d1wmaa1 | 275 | c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydrox | 1e-31 | |
| d1yo6a1 | 250 | c.2.1.2 (A:1-250) Putative carbonyl reductase snif | 2e-24 | |
| d1spxa_ | 264 | c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nemato | 8e-22 | |
| d1xg5a_ | 257 | c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC41 | 1e-21 | |
| d1yb1a_ | 244 | c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase | 5e-20 | |
| d1xkqa_ | 272 | c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorh | 2e-19 | |
| d1hxha_ | 253 | c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydroge | 3e-19 | |
| d1ydea1 | 250 | c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase | 1e-18 | |
| d2ae2a_ | 259 | c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu | 2e-18 | |
| d2ew8a1 | 247 | c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenas | 3e-18 | |
| d2gdza1 | 254 | c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrog | 6e-18 | |
| d1xq1a_ | 259 | c.2.1.2 (A:) Tropinone reductase {Thale cress (Ara | 6e-18 | |
| d1zmta1 | 252 | c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Ag | 1e-17 | |
| d2d1ya1 | 248 | c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {T | 1e-17 | |
| d1zk4a1 | 251 | c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase | 2e-17 | |
| d2bgka1 | 268 | c.2.1.2 (A:11-278) Rhizome secoisolariciresinol de | 6e-17 | |
| d1sbya1 | 254 | c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase | 9e-17 | |
| d1xhla_ | 274 | c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorh | 2e-16 | |
| d1snya_ | 248 | c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly | 3e-16 | |
| d1bdba_ | 276 | c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehy | 5e-16 | |
| d1pr9a_ | 244 | c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapie | 6e-16 | |
| d1cyda_ | 242 | c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus muscul | 2e-15 | |
| d1hdca_ | 254 | c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydr | 2e-15 | |
| d1nffa_ | 244 | c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycob | 2e-15 | |
| d1gz6a_ | 302 | c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase do | 3e-15 | |
| d1h5qa_ | 260 | c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Aga | 5e-15 | |
| d1ae1a_ | 258 | c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu | 8e-15 | |
| d1iy8a_ | 258 | c.2.1.2 (A:) Levodione reductase {Corynebacterium | 2e-14 | |
| d2bd0a1 | 240 | c.2.1.2 (A:2-241) Bacterial sepiapterin reductase | 3e-14 | |
| d1ja9a_ | 259 | c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reduc | 3e-14 | |
| d1vl8a_ | 251 | c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga | 3e-14 | |
| d1fmca_ | 255 | c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase | 4e-14 | |
| d1gega_ | 255 | c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Kl | 7e-14 | |
| d1yxma1 | 297 | c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA re | 7e-14 | |
| d1edoa_ | 244 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 2e-13 | |
| d1ulsa_ | 242 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 3e-13 | |
| d2rhca1 | 257 | c.2.1.2 (A:5-261) beta-keto acyl carrier protein r | 4e-13 | |
| d1mxha_ | 266 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 7e-13 | |
| d1dhra_ | 236 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 1e-12 | |
| d1k2wa_ | 256 | c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter s | 2e-12 | |
| d1oaaa_ | 259 | c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus mus | 3e-12 | |
| d1fjha_ | 257 | c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase | 6e-12 | |
| d2a4ka1 | 241 | c.2.1.2 (A:2-242) beta-keto acyl carrier protein r | 8e-12 | |
| d1zema1 | 260 | c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconoba | 9e-12 | |
| d1geea_ | 261 | c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megat | 2e-11 | |
| d1jtva_ | 285 | c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroi | 3e-11 | |
| d1ooea_ | 235 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 3e-11 | |
| d1g0oa_ | 272 | c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase | 3e-11 | |
| d1w6ua_ | 294 | c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondr | 4e-11 | |
| d1xu9a_ | 269 | c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase | 5e-11 | |
| d2c07a1 | 251 | c.2.1.2 (A:54-304) beta-keto acyl carrier protein | 5e-11 | |
| d1uzma1 | 237 | c.2.1.2 (A:9-245) beta-keto acyl carrier protein r | 6e-11 | |
| d1q7ba_ | 243 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 1e-10 | |
| d1o5ia_ | 234 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 3e-10 | |
| d1x1ta1 | 260 | c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydroge | 3e-10 | |
| d2o23a1 | 248 | c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydr | 5e-10 | |
| d2fr1a1 | 259 | c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI | 5e-10 | |
| d1ulua_ | 256 | c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermoph | 6e-10 | |
| d2ag5a1 | 245 | c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR fami | 6e-10 | |
| d1e7wa_ | 284 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 3e-09 | |
| d1qsga_ | 258 | c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli | 2e-08 | |
| d1uaya_ | 241 | c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogena | 4e-08 | |
| d2pd4a1 | 274 | c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacte | 6e-07 | |
| d2h7ma1 | 268 | c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacteri | 8e-07 | |
| d1jaya_ | 212 | c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase | 1e-04 | |
| d1d7oa_ | 297 | c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (B | 3e-04 | |
| d1luaa1 | 191 | c.2.1.7 (A:98-288) Methylene-tetrahydromethanopter | 4e-04 |
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 275 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 118 bits (295), Expect = 1e-31
Identities = 56/272 (20%), Positives = 100/272 (36%), Gaps = 25/272 (9%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TG + G+GLA + L +++ RD + + A + + LD+ L
Sbjct: 6 ALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDL 65
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
S+R D R+ LDVLV NA + A T E+++ TN G + LL
Sbjct: 66 QSIRALRDFLRKEYGGLDVLVNNAGIAFKVADP-TPFHIQAEVTMKTNFFGTRDVCTELL 124
Query: 209 DDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGL------NSSSM 262
+K R++ V SI + + + L GL ++
Sbjct: 125 PLIKPQG----RVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTKKG 180
Query: 263 IDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEE---TGIAFASLYPGCIATTGLFREH-- 317
+ + + AY +K+ + + R+ E+ I + PG + T +
Sbjct: 181 VHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVR-TDMAGPKAT 239
Query: 318 --------IPLFRLLFPPFQKYITKGYVSEDE 341
P++ L PP + +VSE
Sbjct: 240 KSPEEGAETPVYLALLPPDAEGPHGQFVSEKR 271
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Score = 98.0 bits (243), Expect = 2e-24
Identities = 44/228 (19%), Positives = 75/228 (32%), Gaps = 26/228 (11%)
Query: 86 KGSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD 144
GSV++TGA+ G+GL + L + HII RD E+A + + ++ L
Sbjct: 3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARD---VEKATELKSIKDSRVHVLPLT 59
Query: 145 LASLDSVRQFVDTFRR--SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 202
+ S+ FV L +L+ NA V L + N L
Sbjct: 60 VTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVL 119
Query: 203 LSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSM 262
L++ LL LK + + S +G + +
Sbjct: 120 LTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLG-------------------SITDN 160
Query: 263 IDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIAT 310
G AY+ SK + + ++ + + PG + T
Sbjct: 161 TSGSAQFPVLAYRMSKAAINMFGRTLAVDL-KDDNVLVVNFCPGWVQT 207
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 91.2 bits (226), Expect = 8e-22
Identities = 34/172 (19%), Positives = 68/172 (39%), Gaps = 10/172 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK---SAGMAKENYTIMHLDL 145
IITG+S+G+G ATA A G + + R + E + +AG++++N + D+
Sbjct: 8 AIITGSSNGIGRATAVLFAREG-AKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADV 66
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTA---EGFELSVGTNHLGHFL 202
+ + + T LD+LV NA +P ++ T TA E ++ ++ N
Sbjct: 67 TTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIA 126
Query: 203 LSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGL 254
L++ + ++ + SI + + +
Sbjct: 127 LTKKA---VPHLSSTKGEIVNISSIASGLHATPDFPYYSIAKAAIDQYTRNT 175
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Score = 90.4 bits (224), Expect = 1e-21
Identities = 30/143 (20%), Positives = 58/143 (40%), Gaps = 4/143 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLA 146
++TGAS G+G A A+AL + G ++ R E A A DL+
Sbjct: 13 ALVTGASGGIGAAVARALVQQG-LKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLS 71
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
+ + + R +D+ + NA + P + + G++ N L + +R
Sbjct: 72 NEEDILSMFSAIRSQHSGVDICINNAGLARPDTLL-SGSTSGWKDMFNVNVLALSICTRE 130
Query: 207 LLDDLKQSDYPSKRLIIVGSITG 229
+K+ + +I + S++G
Sbjct: 131 AYQSMKERNVDDGHIININSMSG 153
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Score = 85.8 bits (212), Expect = 5e-20
Identities = 41/248 (16%), Positives = 76/248 (30%), Gaps = 41/248 (16%)
Query: 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTI 140
+K++ V+ITGA G+G TA A+ +++ + E A
Sbjct: 2 RKSVTGEIVLITGAGHGIGRLTAYEFAKLK-SKLVLWDINKHGLEETAAKCKGLGAKVHT 60
Query: 141 MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGH 200
+D ++ + + + + +LV N A + T+ E + N L H
Sbjct: 61 FVVDCSNREDIYSSAKKVKAEIGDVSILV-NNAGVVYTSDLFATQDPQIEKTFEVNVLAH 119
Query: 201 FLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSS 260
F ++ L + +++ ++ V S G L
Sbjct: 120 FWTTKAFLPAMTKNN--HGHIVTVASAAG-----------------HVSVPFLL------ 154
Query: 261 SMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRF--HEETGIAFASLYPGCIATTGLFREHI 318
AY SK + + + TG+ L P + T +
Sbjct: 155 ------------AYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNPST 202
Query: 319 PLFRLLFP 326
L L P
Sbjct: 203 SLGPTLEP 210
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Score = 84.7 bits (209), Expect = 2e-19
Identities = 32/172 (18%), Positives = 67/172 (38%), Gaps = 10/172 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK---SAGMAKENYTIMHLDL 145
VIITG+S+G+G TA A+ G ++ + R + E + +G++++ + D+
Sbjct: 8 VIITGSSNGIGRTTAILFAQEG-ANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADV 66
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTF---TAEGFELSVGTNHLGHFL 202
+ D Q +++ + +DVLV NA +P A T + + ++ N
Sbjct: 67 TTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIE 126
Query: 203 LSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGL 254
+++ + ++ V SI + L +
Sbjct: 127 MTKKV---KPHLVASKGEIVNVSSIVAGPQAQPDFLYYAIAKAALDQYTRST 175
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Score = 83.9 bits (207), Expect = 3e-19
Identities = 34/163 (20%), Positives = 59/163 (36%), Gaps = 5/163 (3%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TG +SG+GL K L G + + + ++ A G E + D++S
Sbjct: 9 ALVTGGASGVGLEVVKLLLGEG-AKVAFSDINEAAGQQLAAELG---ERSMFVRHDVSSE 64
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
+ +R L+VLV NA + LP T E F + N F+ + +
Sbjct: 65 ADWTLVMAAVQRRLGTLNVLVNNAGILLP-GDMETGRLEDFSRLLKINTESVFIGCQQGI 123
Query: 209 DDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFA 251
+K++ + V S + A R A
Sbjct: 124 AAMKETGGSIINMASVSSWLPIEQYAGYSASKAAVSALTRAAA 166
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.9 bits (202), Expect = 1e-18
Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 8/141 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V++TG G+G +A +G +++ +D + + D+
Sbjct: 9 VVVTGGGRGIGAGIVRAFVNSG-ARVVICDKDESGGRALEQELP----GAVFILCDVTQE 63
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
D V+ V R LD +V NA + P + +A+GF + N LG + L++L L
Sbjct: 64 DDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLAL 123
Query: 209 DDLKQSDYPSKRLIIVGSITG 229
L++S +I + S+ G
Sbjct: 124 PYLRKS---QGNVINISSLVG 141
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Score = 81.6 bits (201), Expect = 2e-18
Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 5/144 (3%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TG S G+G + LA G + R+ + DL+S
Sbjct: 11 ALVTGGSRGIGYGIVEELASLG-ASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSR 69
Query: 149 DSVRQFVDTF-RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
++ ++T L++LV NA + + + +T E + L + N + LS L
Sbjct: 70 SERQELMNTVANHFHGKLNILVNNAGIVIYKEAK-DYTVEDYSLIMSINFEAAYHLSVLA 128
Query: 208 LDDLKQSDYPSKRLIIVGSITGNT 231
LK S+ + + + S++G
Sbjct: 129 HPFLKASERGNV--VFISSVSGAL 150
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Score = 81.1 bits (200), Expect = 3e-18
Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 4/128 (3%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+ITG ++G+G A A+ A G I +A A A + + D++
Sbjct: 8 AVITGGANGIGRAIAERFAVEG-ADIAIADLV--PAPEAEAAIRNLGRRVLTVKCDVSQP 64
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
V F + D+LV NA +Y + T E ++ + N FL+++ +
Sbjct: 65 GDVEAFGKQVISTFGRCDILVNNAGIYPLIPFD-ELTFEQWKKTFEINVDSGFLMAKAFV 123
Query: 209 DDLKQSDY 216
+K++ +
Sbjct: 124 PGMKRNGW 131
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.0 bits (197), Expect = 6e-18
Identities = 33/165 (20%), Positives = 59/165 (35%), Gaps = 12/165 (7%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE--NYTIMHLDLA 146
++TGA+ G+G A A+AL G + + + + + E + D+A
Sbjct: 6 ALVTGAAQGIGRAFAEALLLKG-AKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVA 64
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
+R LD+LV NA V +E ++ N + + L
Sbjct: 65 DQQQLRDTFRKVVDHFGRLDILVNNAGVNNEKN---------WEKTLQINLVSVISGTYL 115
Query: 207 LLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFA 251
LD + + + +II S +A A+ + GF
Sbjct: 116 GLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFT 160
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 80.1 bits (197), Expect = 6e-18
Identities = 29/131 (22%), Positives = 46/131 (35%), Gaps = 3/131 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V++TG + G+G A + A G I R+ + T D +
Sbjct: 11 VLVTGGTKGIGHAIVEEFAGFG-AVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLR 69
Query: 149 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
+ + G LD+L+ N +TAE F + TN + LS+L
Sbjct: 70 PEREKLMQTVSSMFGGKLDILINNLGAIRSKPTL-DYTAEDFSFHISTNLESAYHLSQLA 128
Query: 208 LDDLKQSDYPS 218
LK S +
Sbjct: 129 HPLLKASGCGN 139
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Score = 78.9 bits (194), Expect = 1e-17
Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 7/114 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
I+T G+ +A L+E G + F + + A T L S
Sbjct: 3 AIVTNVKHFGGMGSALRLSEAG-HTVACHDESFKQKDELEAFAE------TYPQLKPMSE 55
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 202
+ ++ + +DVLV N + E + +V + F
Sbjct: 56 QEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFA 109
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Score = 78.7 bits (194), Expect = 1e-17
Identities = 36/166 (21%), Positives = 57/166 (34%), Gaps = 11/166 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V++TG + G+G A A+A A G + + E A G +DL
Sbjct: 8 VLVTGGARGIGRAIAQAFAREG-ALVALCDLRPEGKEVAEAIGG------AFFQVDLEDE 60
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
+FV+ + +DVLV NAA+ P + T + + N LS L
Sbjct: 61 RERVRFVEEAAYALGRVDVLVNNAAIAAPGSAL-TVRLPEWRRVLEVNLTAPMHLSALA- 118
Query: 209 DDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGL 254
++ I+ + N A+ G L L
Sbjct: 119 --AREMRKVGGGAIVNVASVQGLFAEQENAAYNASKGGLVNLTRSL 162
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Score = 78.1 bits (192), Expect = 2e-17
Identities = 38/165 (23%), Positives = 63/165 (38%), Gaps = 5/165 (3%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
IITG + G+GLA A E G +++ R E+AAKS G + D +
Sbjct: 9 AIITGGTLGIGLAIATKFVEEG-AKVMITGRHSDVGEKAAKSVG-TPDQIQFFQHDSSDE 66
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
D + D ++ P+ LV NA + T + + N G F +RL +
Sbjct: 67 DGWTKLFDATEKAFGPVSTLVNNAGIA-VNKSVEETTTAEWRKLLAVNLDGVFFGTRLGI 125
Query: 209 DDLKQSDYPSKRLII--VGSITGNTNTLAGNVPPKANLGDLRGFA 251
+K + + + + G+ + A N A + A
Sbjct: 126 QRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAA 170
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Score = 77.4 bits (190), Expect = 6e-17
Identities = 34/158 (21%), Positives = 59/158 (37%), Gaps = 4/158 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
IITG + G+G TAK G +++A ++ + G + + + +H D+
Sbjct: 9 AIITGGAGGIGETTAKLFVRYG-AKVVIADIADDHGQKVCNNIG-SPDVISFVHCDVTKD 66
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEP-TFTAEGFELSVGTNHLGHFLLSRLL 207
+ VR VDT LD++ N V T E F+ + N G FL+++
Sbjct: 67 EDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHA 126
Query: 208 LDDLKQSDYPSKRLII-VGSITGNTNTLAGNVPPKANL 244
+ + S + S T K +
Sbjct: 127 ARVMIPAKKGSIVFTASISSFTAGEGVSHVYTATKHAV 164
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Score = 76.6 bits (188), Expect = 9e-17
Identities = 35/223 (15%), Positives = 63/223 (28%), Gaps = 45/223 (20%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA-S 147
VI A G+GL T++ L + + ++ R A A K N T D+
Sbjct: 8 VIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVP 67
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
+ ++ + + +D+L+ A + E ++ N G + +
Sbjct: 68 VAESKKLLKKIFDQLKTVDILINGAGIL---------DDHQIERTIAINFTGLVNTTTAI 118
Query: 208 LDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGD 267
LD + +I N S+
Sbjct: 119 LDFWDKRKGGPGGIIA----------------------------------NICSVTGFNA 144
Query: 268 FDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIAT 310
Y SK + + TG+ S+ PG T
Sbjct: 145 IHQVPVYSASKAAVVSFTNSL-AKLAPITGVTAYSINPGITRT 186
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Score = 76.2 bits (187), Expect = 2e-16
Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 5/119 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK---SAGMAKENYTIMHLDL 145
VIITG+S+G+G + A A+ G + + R+ + E + AG+ E + D+
Sbjct: 7 VIITGSSNGIGRSAAVIFAKEG-AQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADV 65
Query: 146 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPT-FTAEGFELSVGTNHLGHFLL 203
++T +D+LV NA L T E ++ + N +
Sbjct: 66 TEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEM 124
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 75.1 bits (183), Expect = 3e-16
Identities = 50/239 (20%), Positives = 88/239 (36%), Gaps = 30/239 (12%)
Query: 88 SVIITGASSGLGLATAKALAETGK--WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDL 145
S++ITG + GLGL KAL + H+ CR+ +A+ A N I+ +DL
Sbjct: 4 SILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAK-NHSNIHILEIDL 62
Query: 146 ASLDSVRQFVDTFRRSGR--PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLL 203
+ D+ + V + L+VL NA + +A+ ++ ++ TN + +L
Sbjct: 63 RNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIML 122
Query: 204 SRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMI 263
++ L LK++ ++ + N + I
Sbjct: 123 AKACLPLLKKAAKANESQPMGVGRAAIINMSSI-----------------------LGSI 159
Query: 264 DGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322
G G AY+ SK + + I SL+PG + T + PL
Sbjct: 160 QGNTDGGMYAYRTSKSA-LNAATKSLSVDLYPQRIMCVSLHPGWVK-TDMGGSSAPLDV 216
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Score = 75.1 bits (184), Expect = 5e-16
Identities = 35/167 (20%), Positives = 56/167 (33%), Gaps = 8/167 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V+ITG +SGLG A G + + + AER A+ +N + D+ SL
Sbjct: 8 VLITGGASGLGRALVDRFVAEG-AKVAVLDKS---AERLAELETDHGDNVLGIVGDVRSL 63
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTA----KEPTFTAEGFELSVGTNHLGHFLLS 204
+ +Q +D L+ NA ++ + F+ N G+
Sbjct: 64 EDQKQAASRCVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAV 123
Query: 205 RLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFA 251
+ L L S I N A +G +R A
Sbjct: 124 KACLPALVASRGNVIFTISNAGFYPNGGGPLYTAAKHAIVGLVRELA 170
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.9 bits (181), Expect = 6e-16
Identities = 35/166 (21%), Positives = 63/166 (37%), Gaps = 12/166 (7%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V++TGA G+G T +AL TG ++ R + + + +DL
Sbjct: 10 VLVTGAGKGIGRGTVQALHATG-ARVVAVSRTQADLDSLVRECP----GIEPVCVDLGDW 64
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
++ + + + P+D+LV NAAV L T E F+ S N +S+++
Sbjct: 65 EATERALGSV----GPVDLLVNNAAVALLQPFL-EVTKEAFDRSFEVNLRAVIQVSQIVA 119
Query: 209 DDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGL 254
L P I+ S + + + + G L +
Sbjct: 120 RGLIARGVPGA--IVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVM 163
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 72.7 bits (178), Expect = 2e-15
Identities = 35/166 (21%), Positives = 61/166 (36%), Gaps = 12/166 (7%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGA G+G T KAL +G ++ R AK + +DL
Sbjct: 8 ALVTGAGKGIGRDTVKALHASG-AKVVAVTRTNSDLVSLAKECP----GIEPVCVDLGDW 62
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
D+ + + +D+LV NAA+ + T E F+ S N F +S+++
Sbjct: 63 DATEKALGGIGP----VDLLVNNAALVIMQPFL-EVTKEAFDRSFSVNLRSVFQVSQMVA 117
Query: 209 DDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGL 254
D+ P I+ S T + + G + +
Sbjct: 118 RDMINRGVPGS--IVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAM 161
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Score = 72.7 bits (178), Expect = 2e-15
Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 7/141 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
VIITG + GLG A+ G +++A + A+ G + HLD+
Sbjct: 8 VIITGGARGLGAEAARQAVAAG-ARVVLADVLDEEGAATARELG---DAARYQHLDVTIE 63
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
+ ++ V R +D LV NA + E E F V N G F+ + ++
Sbjct: 64 EDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETES-VERFRKVVEINLTGVFIGMKTVI 122
Query: 209 DDLKQSDYPSKRLIIVGSITG 229
+K + ++ + S G
Sbjct: 123 PAMKDAGGG--SIVNISSAAG 141
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 72.4 bits (177), Expect = 2e-15
Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 5/117 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+++G + G+G + +A+ G ++ E A + +HLD+
Sbjct: 9 ALVSGGARGMGASHVRAMVAEG-AKVVFGDIL---DEEGKAMAAELADAARYVHLDVTQP 64
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+ VDT + L VLV NA + E + ++ + N G FL R
Sbjct: 65 AQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIE-DYALTEWQRILDVNLTGVFLGIR 120
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 73.1 bits (179), Expect = 3e-15
Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 10/147 (6%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLK------AERAAKSAGMAKENYTIMH 142
V++TGA GLG A A A AE G +++ + A K +
Sbjct: 10 VLVTGAGGGLGRAYALAFAERG-ALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAV 68
Query: 143 LDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 202
+ S+++ + V T + +DV+V NA + + + E +++ + G F
Sbjct: 69 ANYDSVEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRI-SDEDWDIIQRVHLRGSFQ 127
Query: 203 LSRLLLDDLKQSDYPSKRLIIVGSITG 229
++R D +K+ +Y R+I+ S +G
Sbjct: 128 VTRAAWDHMKKQNYG--RIIMTASASG 152
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Score = 71.7 bits (175), Expect = 5e-15
Identities = 33/170 (19%), Positives = 57/170 (33%), Gaps = 5/170 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-KENYTIMHLDLAS 147
+I+TG + G+GLA +A+A G ++ + R A + G D+++
Sbjct: 12 IIVTGGNRGIGLAFTRAVAAAG-ANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSN 70
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
D V + + P+ L+ NA V + T E F N G F R +
Sbjct: 71 TDIVTKTIQQIDADLGPISGLIANAGVSVVKPAT-ELTHEDFAFVYDVNVFGVFNTCRAV 129
Query: 208 LDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGL 257
K I+V S + ++ + L
Sbjct: 130 AK--LWLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQVFYNSSKAACSNL 177
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Score = 71.3 bits (174), Expect = 8e-15
Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 3/114 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TG S G+G A + LA G + R+ + + + N DL S
Sbjct: 9 ALVTGGSKGIGYAIVEELAGLG-ARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSR 67
Query: 149 DSVRQFVDTF-RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 201
+ + T L++LV NA V + + FT + + + +GTN +
Sbjct: 68 TERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAK-DFTEKDYNIIMGTNFEAAY 120
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Score = 70.2 bits (171), Expect = 2e-14
Identities = 42/166 (25%), Positives = 60/166 (36%), Gaps = 4/166 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACR--DFLKAERAAKSAGMAKENYTIMHLDLA 146
V+ITG SGLG ATA LA G + + + L+A +AA D++
Sbjct: 7 VLITGGGSGLGRATAVRLAAEG-AKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVS 65
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
V +V +D NA + +FTA F+ V N G FL
Sbjct: 66 DEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEK 125
Query: 207 LLDDLKQSDYPSKRLII-VGSITGNTNTLAGNVPPKANLGDLRGFA 251
+L +++ VG I G N +G R A
Sbjct: 126 VLKIMREQGSGMVVNTASVGGIRGIGNQSGYAAAKHGVVGLTRNSA 171
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Score = 69.4 bits (169), Expect = 3e-14
Identities = 35/172 (20%), Positives = 63/172 (36%), Gaps = 10/172 (5%)
Query: 89 VIITGASSGLGLATAKALAETGKWH------IIMACRDFLKAERAAKSAGMAKENYTIMH 142
++ITGA G+G A A A + H ++++ R E+ + +
Sbjct: 4 LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTIT 63
Query: 143 LDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 202
D++ + VR+ +D LV NA V A T E F+ ++ TN G F
Sbjct: 64 ADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSD-LTEEDFDYTMNTNLKGTFF 122
Query: 203 LSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGL 254
L++ L +++ I + T + + RG +
Sbjct: 123 LTQALFALMERQHSGHIFFI---TSVAATKAFRHSSIYCMSKFGQRGLVETM 171
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 69.8 bits (170), Expect = 3e-14
Identities = 32/163 (19%), Positives = 52/163 (31%), Gaps = 1/163 (0%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+ TGA G+G A L G ++ AE + D++
Sbjct: 9 ALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKP 68
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
V D LD ++ N+ + + + T E F+ N G F +++ L
Sbjct: 69 SEVVALFDKAVSHFGGLDFVMSNSGMEVWCDEL-EVTQELFDKVFNLNTRGQFFVAQQGL 127
Query: 209 DDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFA 251
++ I +TG N A G R FA
Sbjct: 128 KHCRRGGRIILTSSIAAVMTGIPNHALYAGSKAAVEGFCRAFA 170
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 69.3 bits (169), Expect = 3e-14
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS-AGMAKENYTIMHLDLAS 147
++TG S GLG A+ LAE G +++A R+ +A AA+ D+++
Sbjct: 8 ALVTGGSRGLGFGIAQGLAEAG-CSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSN 66
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAV 174
+ V++ ++ + LD +V A +
Sbjct: 67 YEEVKKLLEAVKEKFGKLDTVVNAAGI 93
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 68.9 bits (168), Expect = 4e-14
Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 1/93 (1%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
IITGA +G+G A A G ++++ + A D+ S
Sbjct: 14 AIITGAGAGIGKEIAITFATAG-ASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSE 72
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKE 181
+ D +D+LV NA P +
Sbjct: 73 QELSALADFAISKLGKVDILVNNAGGGGPKPFD 105
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Score = 68.3 bits (166), Expect = 7e-14
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTI 140
KK ++TGA G+G A A L + G + + +A + A+ A A +
Sbjct: 1 KKV-----ALVTGAGQGIGKAIALRLVKDG-FAVAIADYNDATAKAVASEINQAGGHAVA 54
Query: 141 MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKE 181
+ +D++ D V V+ R++ DV+V NA V T E
Sbjct: 55 VKVDVSDRDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIE 95
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.9 bits (168), Expect = 7e-14
Identities = 30/149 (20%), Positives = 61/149 (40%), Gaps = 7/149 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS-----AGMAKENYTIMHL 143
I+TG ++G+G A K L E G ++++A R + + AA + +
Sbjct: 15 AIVTGGATGIGKAIVKELLELG-SNVVIASRKLERLKSAADELQANLPPTKQARVIPIQC 73
Query: 144 DLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLL 203
++ + + V V + + ++ LV N + E +++G+ + TN G F +
Sbjct: 74 NIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHI-SSKGWHAVLETNLTGTFYM 132
Query: 204 SRLLLDDLKQSDYPSKRLIIVGSITGNTN 232
+ + + S IIV + G
Sbjct: 133 CKAVYSSWMKEHGGSIVNIIVPTKAGFPL 161
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Score = 67.1 bits (163), Expect = 2e-13
Identities = 42/223 (18%), Positives = 75/223 (33%), Gaps = 27/223 (12%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAGMAKENYTIMHLDLAS 147
V++TGAS G+G A A +L + G +++ R AE +K D++
Sbjct: 4 VVVTGASRGIGKAIALSLGKAG-CKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSK 62
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
V + T + +DV+V NA + T ++ + N G FL ++
Sbjct: 63 EADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKK-SQWDEVIDLNLTGVFLCTQAA 121
Query: 208 LDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGD 267
+ + R+I + S+ G L G G N + + + G
Sbjct: 122 TKIMMKKRKG--RIINIASVVG-----------------LIGNIGQANYAAAKAGVIGFS 162
Query: 268 FDGAKAYKDSK-----VCNMLTMQEFHRRFHEETGIAFASLYP 305
A+ VC + + E+ P
Sbjct: 163 KTAAREGASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTIP 205
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Score = 66.6 bits (162), Expect = 3e-13
Identities = 36/163 (22%), Positives = 62/163 (38%), Gaps = 7/163 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V+ITGA+ G+G AT + A+ G ++ + AA++ G + +D+A
Sbjct: 8 VLITGAAHGIGRATLELFAKEG-ARLVACDIEEGPLREAAEAVG-----AHPVVMDVADP 61
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
SV + LD +V A E +EL + N G FL+++
Sbjct: 62 ASVERGFAEALAHLGRLDGVVHYAG-ITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAAS 120
Query: 209 DDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFA 251
+ +++ + S L GN +G R A
Sbjct: 121 EAMREKNPGSIVLTASRVYLGNLGQANYAASMAGVVGLTRTLA 163
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Score = 66.3 bits (161), Expect = 4e-13
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGA+SG+GL A+ L + G + + R K A D+ S+
Sbjct: 5 ALVTGATSGIGLEIARRLGKEG-LRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSV 63
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTA 179
+ V P+DVLV NA A
Sbjct: 64 PEIEALVAAVVERYGPVDVLVNNAGRPGGGA 94
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Score = 65.7 bits (159), Expect = 7e-13
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRD------FLKAERAAKSAGMAKENYTIMH 142
+ITG + +G + A L + G + +++ R L AE A AG A +
Sbjct: 4 AVITGGARRIGHSIAVRLHQQG-FRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLS 62
Query: 143 LDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPT 178
L + LD +D R+ DVLV NA+ Y PT
Sbjct: 63 LSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPT 98
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 64.5 bits (156), Expect = 1e-12
Identities = 18/151 (11%), Positives = 40/151 (26%), Gaps = 19/151 (12%)
Query: 79 QGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENY 138
+ ++ V++ G LG +A W + + A
Sbjct: 1 EARR------VLVYGGRGALGSRCVQAFRARN-WWVAS-------IDVVENEEASASVIV 46
Query: 139 TIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHL 198
+ D V V + +D ++C A + + + +L +
Sbjct: 47 KMTDSFTEQADQVTAEVGKLLGDQK-VDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIW 105
Query: 199 GHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
+ S L + L + G+
Sbjct: 106 TSTISSHL----ATKHLKEGGLLTLAGAKAA 132
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Score = 64.4 bits (156), Expect = 2e-12
Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 5/114 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+ITG++ G+G A A+A G + +A + A A G + LD+
Sbjct: 8 ALITGSARGIGRAFAEAYVREG-ARVAIADINLEAARATAAEIG---PAACAIALDVTDQ 63
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 202
S+ + V +D+LV NAA++ A T E ++ N G
Sbjct: 64 ASIDRCVAELLDRWGSIDILVNNAALF-DLAPIVEITRESYDRLFAINVSGTLF 116
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 63.7 bits (154), Expect = 3e-12
Identities = 32/176 (18%), Positives = 55/176 (31%), Gaps = 11/176 (6%)
Query: 89 VIITGASSGLGLATAKALAETGK--WHIIMACRDFLKAERAAK--SAGMAKENYTIMHLD 144
++TGAS G G A A LA ++++ R + + A + D
Sbjct: 9 CVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAAD 68
Query: 145 LASLDSVRQFV----DTFRRSGRPLDVLVCNAAVYLPTAKEP--TFTAEGFELSVGTNHL 198
L + V++ + + R G +L+ NAA +K N
Sbjct: 69 LGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLT 128
Query: 199 GHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGL 254
L+ L+ + S SK ++ + S G A L
Sbjct: 129 SMLCLTSGTLNAFQDSPGLSKTVVNI-SSLCALQPYKGWGLYCAGKAARDMLYQVL 183
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Score = 62.6 bits (151), Expect = 6e-12
Identities = 37/206 (17%), Positives = 66/206 (32%), Gaps = 36/206 (17%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++I+G ++G+G AT K L G I+ AE A DL++
Sbjct: 4 IVISGCATGIGAATRKVLEAAG-HQIVGIDIR--DAEVIA---------------DLSTA 45
Query: 149 DSVRQ-FVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
+ +Q D + + +D LV A + + V N+ G L
Sbjct: 46 EGRKQAIADVLAKCSKGMDGLVLCAGL--------GPQTKVLGNVVSVNYFGATELMDAF 97
Query: 208 LDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGD 267
L LK+ P+ +I + G + + G+
Sbjct: 98 LPALKKGHQPAAVVISSVAS---------AHLAFDKNPLALALEAGEEAKARAIVEHAGE 148
Query: 268 FDGAKAYKDSKVCNMLTMQEFHRRFH 293
G AY SK + +++ +
Sbjct: 149 QGGNLAYAGSKNALTVAVRKRAAAWG 174
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Score = 62.0 bits (150), Expect = 8e-12
Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 4/99 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+++TGA+SG+G A A G ++ R+ A++ + + D++
Sbjct: 8 ILVTGAASGIGRAALDLFAREG-ASLVAVDRE---ERLLAEAVAALEAEAIAVVADVSDP 63
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAE 187
+V L + A V
Sbjct: 64 KAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEA 102
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Score = 62.1 bits (150), Expect = 9e-12
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 1/113 (0%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGA +GLATA LAE G I + + E+A S D+ S
Sbjct: 8 CLVTGAGGNIGLATALRLAEEG-TAIALLDMNREALEKAEASVREKGVEARSYVCDVTSE 66
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 201
++V VD+ R +D L NA A + ++ F + N G F
Sbjct: 67 EAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAF 119
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Score = 61.7 bits (149), Expect = 2e-11
Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 2/100 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFL-KAERAAKSAGMAKENYTIMHLDLAS 147
V+ITG+S+GLG + A A +++ R +A + + D+
Sbjct: 10 VVITGSSTGLGKSMAIRFATEK-AKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTV 68
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAE 187
V V + + LDV++ NA + P + ++
Sbjct: 69 ESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSD 108
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.0 bits (147), Expect = 3e-11
Identities = 34/168 (20%), Positives = 57/168 (33%), Gaps = 5/168 (2%)
Query: 89 VIITGASSGLGLATAKALAETGK--WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA 146
V+ITG SSG+GL A LA + + RD R ++A +
Sbjct: 5 VLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQL 64
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
+ + R ++ A + + N +G + +
Sbjct: 65 DVRDSKSVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQA 124
Query: 207 LLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGL 254
L D+K+ S R+++ GS+ G L N A+ L G L
Sbjct: 125 FLPDMKRRG--SGRVLVTGSVGGLMG-LPFNDVYCASKFALEGLCESL 169
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 60.3 bits (145), Expect = 3e-11
Identities = 20/143 (13%), Positives = 45/143 (31%), Gaps = 13/143 (9%)
Query: 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA 146
G VI+ G LG A + + G + ++ A A S + N
Sbjct: 3 GKVIVYGGKGALGSAILEFFKKNG-YTVLNIDLS---ANDQADSNILVDGNKN----WTE 54
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
S+ + + + + +D + C A + + + +L + + + ++
Sbjct: 55 QEQSILEQTASSLQGSQ-VDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAK- 112
Query: 207 LLDDLKQSDYPSKRLIIVGSITG 229
P L + G+
Sbjct: 113 ---LATTHLKPGGLLQLTGAAAA 132
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 60.5 bits (146), Expect = 3e-11
Identities = 22/118 (18%), Positives = 46/118 (38%), Gaps = 3/118 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFL-KAERAAKSAGMAKENYTIMHLDLAS 147
++TGA G+G A L G +I+ + AE + + + ++
Sbjct: 21 ALVTGAGRGIGREMAMELGRRG-CKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGV 79
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
++ + + + + LD++ N+ V + T E F+ N G F ++R
Sbjct: 80 VEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVK-DVTPEEFDRVFTINTRGQFFVAR 136
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} Length = 294 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Score = 60.5 bits (146), Expect = 4e-11
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS-AGMAKENYTIMHLDLAS 147
ITG +GLG L+ G ++A R + A+ + + D+
Sbjct: 28 AFITGGGTGLGKGMTTLLSSLG-AQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRD 86
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNA 172
D V+ V + ++++ NA
Sbjct: 87 PDMVQNTVSELIKVAGHPNIVINNA 111
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.2 bits (145), Expect = 5e-11
Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 3/148 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDLAS 147
VI+TGAS G+G A LA+ G H+++ R ++ + + +
Sbjct: 17 VIVTGASKGIGREMAYHLAKMG-AHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMED 75
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207
+ QFV + LD+L+ N + S+ N L + +L+
Sbjct: 76 MTFAEQFVAQAGKLMGGLDMLILNHITN-TSLNLFHDDIHHVRKSMEVNFLSYVVLTVAA 134
Query: 208 LDDLKQSDYPSKRLIIVGSITGNTNTLA 235
L LKQS+ + + A
Sbjct: 135 LPMLKQSNGSIVVVSSLAGKVAYPMVAA 162
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 59.6 bits (144), Expect = 5e-11
Identities = 28/141 (19%), Positives = 58/141 (41%), Gaps = 4/141 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGA G+G AK LA++ H+I R + + D++
Sbjct: 13 ALVTGAGRGIGREIAKMLAKSV-SHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKK 71
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
+ + + ++ + +D+LV NA + + +E + TN F +++ +
Sbjct: 72 EEISEVINKILTEHKNVDILVNNAGIT-RDNLFLRMKNDEWEDVLRTNLNSLFYITQPIS 130
Query: 209 DDLKQSDYPSKRLIIVGSITG 229
+ + Y R+I + SI G
Sbjct: 131 KRMINNRYG--RIINISSIVG 149
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 59.4 bits (143), Expect = 6e-11
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 12/84 (14%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V++TG + G+GLA A+ LA G + + R + + +D+
Sbjct: 10 VLVTGGNRGIGLAIAQRLAADG-HKVAVTHRGSGAPKGLFG-----------VEVDVTDS 57
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNA 172
D+V + P++VLV NA
Sbjct: 58 DAVDRAFTAVEEHQGPVEVLVSNA 81
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Score = 59.0 bits (142), Expect = 1e-10
Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 7/141 (4%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TGAS G+G A A+ LA G +I A+ + G N + L++
Sbjct: 7 ALVTGASRGIGRAIAETLAARG-AKVIGTATSENGAQAISDYLG---ANGKGLMLNVTDP 62
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
S+ ++ R +D+LV NA + E + + TN F LS+ ++
Sbjct: 63 ASIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEEWND-IIETNLSSVFRLSKAVM 121
Query: 209 DDLKQSDYPSKRLIIVGSITG 229
+ + + R+I +GS+ G
Sbjct: 122 RAMMKKRHG--RIITIGSVVG 140
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Score = 57.4 bits (138), Expect = 3e-10
Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 17/117 (14%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
V++ AS G+G A A L++ G + + R+ +R+ +
Sbjct: 7 VLVLAASRGIGRAVADVLSQEG-AEVTICARNEELLKRSGHRYVVC-------------- 51
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
+R+ +D + +D+LV NA + E F+ ++ + L + R
Sbjct: 52 -DLRKDLDLLFEKVKEVDILVLNAGGPKAGFFDELTN-EDFKEAIDSLFLNMIKIVR 106
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Score = 57.9 bits (139), Expect = 3e-10
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS-AGMAKENYTIMHLDLAS 147
++TG++SG+GL A ALA G ++ D + E+ A DL+
Sbjct: 7 AVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSK 66
Query: 148 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAE 187
++VR VD R +D+LV NA + E T +
Sbjct: 67 GEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEK 106
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.2 bits (137), Expect = 5e-10
Identities = 38/175 (21%), Positives = 60/175 (34%), Gaps = 7/175 (4%)
Query: 86 KGSV-IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD 144
KG V +ITG +SGLGLATA+ L G ++ E AK G
Sbjct: 4 KGLVAVITGGASGLGLATAERLVGQG-ASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTS 62
Query: 145 LASLDSVRQFVDTFRRSGRPLDVLVC--NAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 202
+ + A+ K T T E F+ + N +G F
Sbjct: 63 EKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFN 122
Query: 203 LSRLLLDDLKQSDYPSKR---LIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGL 254
+ RL+ ++ Q++ +II + G A+ G + G +
Sbjct: 123 VIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPI 177
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Score = 56.9 bits (136), Expect = 5e-10
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMH 142
G+V++TG + G+G A+ LA G H+++ R A+ A + +
Sbjct: 10 GTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTT 65
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Score = 56.8 bits (136), Expect = 6e-10
Identities = 23/171 (13%), Positives = 49/171 (28%), Gaps = 12/171 (7%)
Query: 89 VIITGASS--GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA 146
++ G ++ LG A A L E G + ++ + A K A
Sbjct: 11 ALVMGVTNQRSLGFAIAAKLKEAG-AEVALSYQAERLRPEAEKLAEALGGALLFRADV-T 68
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFT---AEGFELSVGTNHLGHFLL 203
+ + + + LD LV A A E + + + L++ + +
Sbjct: 69 QDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAV 128
Query: 204 SRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGL 254
+R L++ ++ + + L L
Sbjct: 129 ARRAEPLLREGGG----IVTLTYYASEK-VVPKYNVMAIAKAALEASVRYL 174
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.6 bits (136), Expect = 6e-10
Identities = 28/166 (16%), Positives = 56/166 (33%), Gaps = 13/166 (7%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
+I+T A+ G+G A A A A G +I + K + K G+
Sbjct: 9 IILTAAAQGIGQAAALAFAREG-AKVIATDINESKLQELEKYPGIQTRVLD--------- 58
Query: 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 208
+ ++ +D F LDVL A + ++ S+ N +L+ + L
Sbjct: 59 VTKKKQIDQFANEVERLDVLFNVAGFVHHGTVLDC-EEKDWDFSMNLNVRSMYLMIKAFL 117
Query: 209 DDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGL 254
+ + +I + S+ + + + G +
Sbjct: 118 PKMLAQKSGN--IINMSSVASSVKGVVNRCVYSTTKAAVIGLTKSV 161
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Score = 55.1 bits (131), Expect = 3e-09
Identities = 26/138 (18%), Positives = 43/138 (31%), Gaps = 21/138 (15%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACR------DFLKAERAAKSAGMA-------- 134
++TGA+ LG + A+ L G + + + + L A A+ A
Sbjct: 5 ALVTGAAKRLGRSIAEGLHAEG-YAVCLHYHRSAAEANALSATLNARRPNSAITVQADLS 63
Query: 135 -----KENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGF 189
+ + + V DVLV NA+ + PT +G
Sbjct: 64 NVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLL-RNDEDGH 122
Query: 190 ELSVGTNHLGHFLLSRLL 207
E VG + L
Sbjct: 123 EPCVGDREAMETATADLF 140
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Score = 52.2 bits (124), Expect = 2e-08
Identities = 22/172 (12%), Positives = 50/172 (29%), Gaps = 13/172 (7%)
Query: 89 VIITGASS--GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA 146
+++TG +S + A+A+ G + ++ R + A + + D+A
Sbjct: 8 ILVTGVASKLSIAYGIAQAMHREG-AELAFTYQNDKLKGRVEEFAAQLGSDIVLQC-DVA 65
Query: 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVY----LPTAKEPTFTAEGFELSVGTNHLGHFL 202
S+ + D V + L T EGF+++ +
Sbjct: 66 EDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVA 125
Query: 203 LSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGL 254
+++ L ++ S G + L +
Sbjct: 126 MAKACRSMLNPGSA-----LLTLSYLGAERAIPNYNVMGLAKASLEANVRYM 172
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 51.3 bits (122), Expect = 4e-08
Identities = 28/147 (19%), Positives = 53/147 (36%), Gaps = 19/147 (12%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 148
++TG +SGLG A A AL G + +++ E+ + D+
Sbjct: 4 ALVTGGASGLGRAAALALKARG-YRVVVLDLR------------REGEDLIYVEGDVTRE 50
Query: 149 DSVRQFVDTFRRSGRPLDVLVCN--AAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 206
+ VR+ V + V+ KE E F + N LG F + RL
Sbjct: 51 EDVRRAVARAQEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRL 110
Query: 207 LLDDLKQSDYPSK----RLIIVGSITG 229
++++ ++ ++ S+
Sbjct: 111 AAWAMRENPPDAEGQRGVIVNTASVAA 137
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Score = 48.1 bits (113), Expect = 6e-07
Identities = 14/101 (13%), Positives = 37/101 (36%), Gaps = 10/101 (9%)
Query: 79 QGKKTLRKGSVIITGASS--GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE 136
+GKK +I G ++ + A++ G + + E+ +
Sbjct: 4 KGKK------GLIVGVANNKSIAYGIAQSCFNQG-ATLAFTYLN-ESLEKRVRPIAQELN 55
Query: 137 NYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLP 177
+ + LD++ + + ++ ++ LD +V + A
Sbjct: 56 SPYVYELDVSKEEHFKSLYNSVKKDLGSLDFIVHSVAFAPK 96
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Score = 47.4 bits (111), Expect = 8e-07
Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 10/100 (10%)
Query: 79 QGKKTLRKGSVIITGA--SSGLGLATAKALAETGKWHIIMACRDFLK-AERAAKSAGMAK 135
GK+ ++++G S + A+ E G +++ D L+ +R
Sbjct: 5 DGKR------ILVSGIITDSSIAFHIARVAQEQG-AQLVLTGFDRLRLIQRITDRLPAKA 57
Query: 136 ENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVY 175
+ + L S+ V +G LD +V +
Sbjct: 58 PLLELDVQNEEHLASLAGRVTEAIGAGNKLDGVVHSIGFM 97
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 40.4 bits (93), Expect = 1e-04
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK 129
V + G + LG A LA G I++ R KAE A
Sbjct: 3 VALLGGTGNLGKGLALRLATLG-HEIVVGSRREEKAEAKAA 42
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Score = 40.1 bits (92), Expect = 3e-04
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 8/82 (9%)
Query: 79 QGKKTLRKGSVIITGASS--GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE 136
+GK+ I G + G G A AK+LA G ++ L + G +
Sbjct: 7 RGKR------AFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQ 60
Query: 137 NYTIMHLDLASLDSVRQFVDTF 158
+ + L + V F
Sbjct: 61 SRVLPDGSLMEIKKVYPLDAVF 82
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Score = 38.7 bits (89), Expect = 4e-04
Identities = 16/162 (9%), Positives = 41/162 (25%), Gaps = 15/162 (9%)
Query: 68 TASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA 127
TA+ V + +++ ++ + +G+ +A LA G ++ + A
Sbjct: 5 TAAAGVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAA 64
Query: 128 AKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAE 187
+ + A S + V + A+ L
Sbjct: 65 DSVNKRF--KVNVTAAETADDASRAEAVK-------GAHFVFTAGAIGL-----ELLPQA 110
Query: 188 GFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 229
++ + + L + + G
Sbjct: 111 AWQNESSIEIVADYNAQPPLGIGGIDA-TDKGKEYGGKRAFG 151
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 350 | |||
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 100.0 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 100.0 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 100.0 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 100.0 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 100.0 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 100.0 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 100.0 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 100.0 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 100.0 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 100.0 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 100.0 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 100.0 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 100.0 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 100.0 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 100.0 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 100.0 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 100.0 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 100.0 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 100.0 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 100.0 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 100.0 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 100.0 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 100.0 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 100.0 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 100.0 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 100.0 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 100.0 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 100.0 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 100.0 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 100.0 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 100.0 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 100.0 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 100.0 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 100.0 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 100.0 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 100.0 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 100.0 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 100.0 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 100.0 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 100.0 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 100.0 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 100.0 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 100.0 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 100.0 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 100.0 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 100.0 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 100.0 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 100.0 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 100.0 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 100.0 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 100.0 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 100.0 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 100.0 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 100.0 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 100.0 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 100.0 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 100.0 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 100.0 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 100.0 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.98 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 99.98 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 99.97 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 99.97 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 99.97 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 99.97 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 99.94 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 99.83 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 99.74 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.71 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.71 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.7 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 99.7 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 99.66 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 99.66 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 99.65 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 99.64 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 99.64 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 99.63 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 99.62 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 99.59 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 99.58 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 99.57 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.57 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 99.57 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.56 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 99.56 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.55 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.55 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.5 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.44 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 99.26 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 99.25 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.17 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 99.05 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 98.95 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 98.84 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 98.78 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.62 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 98.02 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 97.95 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 97.65 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.64 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.63 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 97.55 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.46 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 97.42 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.41 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 97.41 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 97.4 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 97.38 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.34 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.29 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 97.25 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 97.21 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 97.12 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 97.1 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 97.07 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 97.01 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.94 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.93 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 96.93 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 96.89 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 96.86 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.84 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.84 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.8 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 96.77 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 96.75 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 96.59 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.54 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.52 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 96.52 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.45 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 96.42 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 96.34 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.33 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 96.33 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 96.32 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 96.31 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 96.26 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 96.17 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 96.16 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 96.09 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 96.04 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 95.94 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 95.92 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 95.86 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 95.83 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 95.83 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.78 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 95.75 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 95.74 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 95.72 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 95.65 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 95.59 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 95.46 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.44 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 95.43 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 95.37 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 95.24 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 95.18 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 95.11 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 95.1 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 94.92 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 94.63 | |
| d1p9oa_ | 290 | Phosphopantothenoylcysteine synthetase {Human (Hom | 94.58 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 94.45 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 94.24 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 94.23 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 94.17 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 94.17 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 93.79 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 93.77 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 93.53 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 93.44 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 93.41 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 93.37 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 93.0 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 92.93 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 92.93 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 92.89 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 92.87 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 92.79 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 92.66 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 92.65 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 92.32 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 92.11 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 92.07 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 92.0 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 91.96 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 91.71 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 91.62 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 91.48 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 91.47 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 91.46 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 91.37 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 91.27 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 91.25 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 90.98 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 90.54 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 90.47 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 90.45 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 90.38 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 90.24 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 90.19 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 90.14 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 90.13 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 90.1 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 89.95 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 89.85 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 89.76 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 89.72 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 89.71 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 89.42 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 89.36 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 89.19 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 89.17 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 88.86 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 88.79 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 88.76 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 88.65 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 88.59 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 88.42 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 88.06 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 88.03 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 87.87 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 87.59 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 87.31 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 87.02 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 86.94 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 86.93 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 86.74 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 86.28 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 86.07 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 85.67 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 85.67 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 85.62 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 85.23 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 84.55 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 84.29 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 84.23 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 84.18 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 84.12 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 83.92 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 83.12 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 83.12 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 83.04 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 82.91 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 82.81 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 82.65 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 82.37 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 82.1 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 82.02 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 81.03 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 80.77 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 80.65 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 80.22 |
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=100.00 E-value=6e-45 Score=322.94 Aligned_cols=226 Identities=16% Similarity=0.177 Sum_probs=193.8
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
...++||++|||||++|||+++|+.|+++|+ +|++++|+.+.++++.++++..+.++.+++||++|+++++++++++.+
T Consensus 5 ~f~lenKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~ 83 (251)
T d2c07a1 5 YYCGENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILT 83 (251)
T ss_dssp CCCCSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 3568999999999999999999999999996 999999999999999999988888999999999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
++|+||+||||||.... .++.+.+.++|++++++|+.++++++|+++|.|++++ .|+||++||+++..+
T Consensus 84 ~~g~iDilvnnag~~~~-~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~G~IVnisS~~~~~~-------- 152 (251)
T d2c07a1 84 EHKNVDILVNNAGITRD-NLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR--YGRIINISSIVGLTG-------- 152 (251)
T ss_dssp HCSCCCEEEECCCCCCC-CCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT--CEEEEEECCTHHHHC--------
T ss_pred hcCCceeeeeccccccc-cccccccHHHHhhhheeeehhhhhhhhhcCcccccCC--CeEEEEECCHHhcCC--------
Confidence 99999999999998654 7788999999999999999999999999999998876 589999999998754
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~ 320 (350)
.++..+|++||+|+.+|+++++.|+ .++|||||+|+||+|+|++........
T Consensus 153 ---------------------------~~~~~~Y~asKaal~~ltr~lA~el-~~~gIrVN~V~PG~v~T~~~~~~~~~~ 204 (251)
T d2c07a1 153 ---------------------------NVGQANYSSSKAGVIGFTKSLAKEL-ASRNITVNAIAPGFISSDMTDKISEQI 204 (251)
T ss_dssp ---------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCC-----CCHHH
T ss_pred ---------------------------CCCCHHHHHHHHHHHHHHHHHHHHh-hhhCeEEEEEccCCEecccccccCHHH
Confidence 3678899999999999999999999 678999999999999999764321111
Q ss_pred HHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 ~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
........+..++.+|||+|+.+++|
T Consensus 205 ---~~~~~~~~pl~R~~~pedvA~~v~fL 230 (251)
T d2c07a1 205 ---KKNIISNIPAGRMGTPEEVANLACFL 230 (251)
T ss_dssp ---HHHHHTTCTTSSCBCHHHHHHHHHHH
T ss_pred ---HHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 11112223346678999999988764
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=100.00 E-value=1e-44 Score=322.95 Aligned_cols=229 Identities=19% Similarity=0.209 Sum_probs=196.9
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
+++|+||++|||||++|||+++|+.|+++|+ +|++++|+.++++++.+++...+.++.+++||++|+++++++++++.+
T Consensus 3 ~f~L~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 81 (259)
T d2ae2a_ 3 RWNLEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVAN 81 (259)
T ss_dssp TTCCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CcCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999996 899999999999999999988888999999999999999999999988
Q ss_pred cCC-CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCC
Q 018819 161 SGR-PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (350)
Q Consensus 161 ~~g-~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (350)
+++ ++|++|||||+... .++.+++.|+|++++++|+.++++++++++|+|.+++ .|+||++||+++..+
T Consensus 82 ~~~~~idilvnnAG~~~~-~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~G~Ii~isS~~~~~~------- 151 (259)
T d2ae2a_ 82 HFHGKLNILVNNAGIVIY-KEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASE--RGNVVFISSVSGALA------- 151 (259)
T ss_dssp HTTTCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTS--SEEEEEECCGGGTSC-------
T ss_pred HhCCCceEEEECCceecc-CccccCCHHHHHHHHhcccceeEEEEeeccchhhhhc--ccccccccccccccc-------
Confidence 876 89999999998654 7888999999999999999999999999999998876 589999999998753
Q ss_pred CCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch-
Q 018819 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI- 318 (350)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~- 318 (350)
.++...|++||+|+.+|+++++.|+ .++|||||+|+||+|+|++......
T Consensus 152 ----------------------------~~~~~~Y~asKaal~~lt~~lA~el-~~~gIrVN~I~PG~i~T~~~~~~~~~ 202 (259)
T d2ae2a_ 152 ----------------------------VPYEAVYGATKGAMDQLTRCLAFEW-AKDNIRVNGVGPGVIATSLVEMTIQD 202 (259)
T ss_dssp ----------------------------CTTCHHHHHHHHHHHHHHHHHHHHT-GGGTEEEEEEEECSBCSHHHHHHTTS
T ss_pred ----------------------------cccccchHHHHHHHHHHHHHHHHHh-CcCceEEEEeeeCcccCHHHHhhhhc
Confidence 3678899999999999999999999 6789999999999999987532111
Q ss_pred hhH-HhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 319 PLF-RLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ~~~-~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
+.. ........+.+..++.+|||+|+.+++|
T Consensus 203 ~~~~~~~~~~~~~~pl~R~g~pedvA~~v~fL 234 (259)
T d2ae2a_ 203 PEQKENLNKLIDRCALRRMGEPKELAAMVAFL 234 (259)
T ss_dssp HHHHHHHHHHHHTSTTCSCBCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 111 1111122223346788999999988764
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.4e-45 Score=322.95 Aligned_cols=225 Identities=18% Similarity=0.189 Sum_probs=194.9
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
|.|+||++|||||++|||+++|+.|+++|+ +|++++|+.++++++.++++..+.++.+++||++|+++++++++++.++
T Consensus 7 m~L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~ 85 (255)
T d1fmca_ 7 LRLDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISK 85 (255)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 568999999999999999999999999996 8999999999999999999888889999999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
+|+||+||||||+... .++ +++.++|++++++|+.|+++++|+++|+|.+++ +|+||++||.++..+
T Consensus 86 ~g~iDilvnnAG~~~~-~~~-e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~g~Ii~isS~~~~~~--------- 152 (255)
T d1fmca_ 86 LGKVDILVNNAGGGGP-KPF-DMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG--GGVILTITSMAAENK--------- 152 (255)
T ss_dssp HSSCCEEEECCCCCCC-CCT-TCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTCC---------
T ss_pred cCCCCEeeeCCcCCCC-Ccc-cCCHHHHHHHHHHHHHHhhhhHHHHHhhhcccc--ccccccccccchhcc---------
Confidence 9999999999998654 555 789999999999999999999999999999876 579999999988754
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.+++.+|++||+|+.+|+++++.|+ .++|||||+|+||+|+|+++.....+-.
T Consensus 153 --------------------------~~~~~~Y~asKaal~~lt~~lA~el-~~~gIrVN~I~PG~i~T~~~~~~~~~e~ 205 (255)
T d1fmca_ 153 --------------------------NINMTSYASSKAAASHLVRNMAFDL-GEKNIRVNGIAPGAILTDALKSVITPEI 205 (255)
T ss_dssp --------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-HTTTEEEEEEEECSBCSHHHHTTCCHHH
T ss_pred --------------------------ccccccchhHHHHHHHHHHHHHHHh-CccCeEEEEeeeCcCcChHhhccCCHHH
Confidence 3678899999999999999999999 6789999999999999987643222211
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
......+.+..++.+|||+|+.+++|
T Consensus 206 --~~~~~~~~pl~R~g~pedvA~~v~fL 231 (255)
T d1fmca_ 206 --EQKMLQHTPIRRLGQPQDIANAALFL 231 (255)
T ss_dssp --HHHHHHTCSSCSCBCHHHHHHHHHHH
T ss_pred --HHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 11112222346678999999988764
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=100.00 E-value=9.2e-45 Score=322.87 Aligned_cols=228 Identities=21% Similarity=0.192 Sum_probs=192.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhcc--CCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM--AKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~--~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
.|+||++|||||++|||+++|+.|+++|+ +|++++|+.+.+++..+++.. .+.++.+++||++|+++++++++++.+
T Consensus 1 rl~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 79 (258)
T d1iy8a_ 1 RFTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTE 79 (258)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHH
Confidence 36899999999999999999999999996 999999999888888777643 355789999999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
++|+||+||||||+.....++.+++.++|++++++|+.|+++++|+++|.|++++ .|+||++||.++..+
T Consensus 80 ~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~--~G~Ii~isS~~~~~~-------- 149 (258)
T d1iy8a_ 80 RFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG--SGMVVNTASVGGIRG-------- 149 (258)
T ss_dssp HHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCGGGTSB--------
T ss_pred HhCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhc--CCCCcccccHhhccC--------
Confidence 9999999999999876667888999999999999999999999999999998776 589999999998754
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~ 320 (350)
.++...|++||+|+.+|+++++.|+ .++|||||+|+||+|+||+........
T Consensus 150 ---------------------------~~~~~~Y~asKaal~~lt~~lA~el-~~~gIrVN~i~PG~v~T~~~~~~~~~~ 201 (258)
T d1iy8a_ 150 ---------------------------IGNQSGYAAAKHGVVGLTRNSAVEY-GRYGIRINAIAPGAIWTPMVENSMKQL 201 (258)
T ss_dssp ---------------------------CSSBHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCSHHHHHHHHHH
T ss_pred ---------------------------CCCchHHHHHHHHHHHHHHHHHHHh-CccCceEEEEeeCcccCHHHHHHHhhc
Confidence 4688999999999999999999999 678999999999999999753211110
Q ss_pred -----HHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 321 -----FRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 -----~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
...........+..++.+|+|+|+.+++|
T Consensus 202 ~~~~~~~~~~~~~~~~pl~R~~~p~dvA~~v~fL 235 (258)
T d1iy8a_ 202 DPENPRKAAEEFIQVNPSKRYGEAPEIAAVVAFL 235 (258)
T ss_dssp CTTCHHHHHHHHHTTCTTCSCBCHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 01111111112246678999999988764
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=100.00 E-value=5.6e-45 Score=324.89 Aligned_cols=228 Identities=20% Similarity=0.199 Sum_probs=196.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.|+||++|||||++|||+++|+.|+++|+ +|++++|+.+.++++.++++..+.++.++.||++|+++++++++++.+++
T Consensus 2 rL~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (260)
T d1zema1 2 KFNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDF 80 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999996 89999999999999999998888899999999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
|+||++|||||+.....++.+++.++|++++++|+.++++++++++|.|.+++ .|+||++||.++..+
T Consensus 81 g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~--~G~II~isS~~~~~~---------- 148 (260)
T d1zema1 81 GKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQN--YGRIVNTASMAGVKG---------- 148 (260)
T ss_dssp SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHHSC----------
T ss_pred CCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhc--CCCCCeeechhhccC----------
Confidence 99999999999876557889999999999999999999999999999998876 589999999998754
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.+++..|++||+|+.+|+++++.|+ .++|||||+|+||+|+|+++.........
T Consensus 149 -------------------------~~~~~~Y~asKaal~~ltk~lA~el-~~~gIrVN~I~PG~v~T~~~~~~~~~~~~ 202 (260)
T d1zema1 149 -------------------------PPNMAAYGTSKGAIIALTETAALDL-APYNIRVNAISPGYMGPGFMWERQVELQA 202 (260)
T ss_dssp -------------------------CTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSSHHHHHHHHHHH
T ss_pred -------------------------CcchHHHHHHHHHHHHHHHHHHHHh-hhhCCEEEEeccCcccCcchhhcchhhhh
Confidence 3678899999999999999999999 67899999999999999976332221100
Q ss_pred -------------hhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 323 -------------LLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 -------------~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.........+..++.+|+|+|+.+++|
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~Pl~R~g~pedvA~~v~fL 242 (260)
T d1zema1 203 KVGSQYFSTDPKVVAQQMIGSVPMRRYGDINEIPGVVAFL 242 (260)
T ss_dssp HHTCTTSCSSHHHHHHHHHHTSTTSSCBCGGGSHHHHHHH
T ss_pred hhcccccccCHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 001111122346678999999988764
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.6e-44 Score=320.03 Aligned_cols=227 Identities=20% Similarity=0.259 Sum_probs=192.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhc-cCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG-MAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~-~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+|+||++|||||++|||+++|+.|+++|+ +|++++|+.+++++..+++. ..+.++.+++||++|+++++++++++.++
T Consensus 2 ~l~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (251)
T d1vl8a_ 2 DLRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEK 80 (251)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999999999996 99999999988888877763 44678999999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
+|+||+||||||+.. ..++.+++.++|++++++|+.++++++|+++|+|++++ .|+||+++|..+...
T Consensus 81 ~g~iDiLVnnAG~~~-~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~G~Ii~i~S~~~~~~--------- 148 (251)
T d1vl8a_ 81 FGKLDTVVNAAGINR-RHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESD--NPSIINIGSLTVEEV--------- 148 (251)
T ss_dssp HSCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCS--SCEEEEECCGGGTCC---------
T ss_pred cCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccc--cccccccccchhccc---------
Confidence 999999999999864 47899999999999999999999999999999998876 589999999876432
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
+.++...|++||+|+.+|+++++.|+ .++|||||+|+||+|+|++....... .
T Consensus 149 -------------------------~~~~~~~Y~asKaal~~lt~~lA~e~-~~~gIrVN~I~PG~i~T~~~~~~~~~-~ 201 (251)
T d1vl8a_ 149 -------------------------TMPNISAYAASKGGVASLTKALAKEW-GRYGIRVNVIAPGWYRTKMTEAVFSD-P 201 (251)
T ss_dssp -------------------------CSSSCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBCSTTTHHHHTC-H
T ss_pred -------------------------cCccccchHHHHHhHHHHHHHHHHHh-cccCeEEEEEeeCcccCHHHHhccCC-H
Confidence 13577899999999999999999999 67899999999999999976321111 1
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..........+..++.+|||+|+.+++|
T Consensus 202 ~~~~~~~~~~pl~R~~~pedvA~~v~fL 229 (251)
T d1vl8a_ 202 EKLDYMLKRIPLGRTGVPEDLKGVAVFL 229 (251)
T ss_dssp HHHHHHHHTCTTSSCBCGGGGHHHHHHH
T ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 1111122223346778999999988764
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=100.00 E-value=1.3e-44 Score=320.04 Aligned_cols=224 Identities=18% Similarity=0.191 Sum_probs=179.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
+|+||++|||||++|||+++|+.|+++|+ +|++++|+..+ +..+.++..+.++.+++||++|+++++++++++.+++
T Consensus 2 rL~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~--~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 78 (247)
T d2ew8a1 2 RLKDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAP--EAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTF 78 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCH--HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCchH--HHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 47999999999999999999999999996 89999997643 2233344556789999999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
|+||+||||||+.. ..++.+++.++|++++++|+.|+++++|+++|.|++++ .|+||++||.++..+
T Consensus 79 G~iDilVnnAG~~~-~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~G~Iv~isS~~~~~~---------- 145 (247)
T d2ew8a1 79 GRCDILVNNAGIYP-LIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG--WGRIINLTSTTYWLK---------- 145 (247)
T ss_dssp SCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGGSC----------
T ss_pred CCCCEEEECCCCCC-CCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcC--CCCccccccchhccc----------
Confidence 99999999999964 47889999999999999999999999999999999876 589999999998754
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.++...|++||+|+.+|+++++.|+ .++|||||+|+||+|+|++......+...
T Consensus 146 -------------------------~~~~~~Y~asKaal~~ltk~lA~el-a~~gIrVN~I~PG~i~T~~~~~~~~~~~~ 199 (247)
T d2ew8a1 146 -------------------------IEAYTHYISTKAANIGFTRALASDL-GKDGITVNAIAPSLVRTATTEASALSAMF 199 (247)
T ss_dssp -------------------------CSSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCC--------------
T ss_pred -------------------------CcccccchhhhccHHHHHHHHHHHh-cccCeEEEEEeeCCCCCccccccccchhH
Confidence 3678899999999999999999999 77899999999999999976432221110
Q ss_pred hhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 323 LLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
...+.. .....++.+|||+|+.+++|
T Consensus 200 ~~~~~~-~~~l~r~~~pedvA~~v~fL 225 (247)
T d2ew8a1 200 DVLPNM-LQAIPRLQVPLDLTGAAAFL 225 (247)
T ss_dssp ----CT-TSSSCSCCCTHHHHHHHHHH
T ss_pred HHHHHH-hccCCCCCCHHHHHHHHHHH
Confidence 000000 01224577999999988764
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.5e-44 Score=318.78 Aligned_cols=221 Identities=21% Similarity=0.236 Sum_probs=190.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
+|+||++|||||++|||+++|+.|+++|+ +|++++|+++.++++.+++. .++..+.||++|+++++++++++.+++
T Consensus 1 dl~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 76 (243)
T d1q7ba_ 1 NFEGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLG---ANGKGLMLNVTDPASIESVLEKIRAEF 76 (243)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHG---GGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhC---CCCcEEEEEecCHHHhhhhhhhhhccc
Confidence 47899999999999999999999999996 99999999999988888774 467889999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
|+||+||||||.... .++.+.+.++|++++++|+.++++++|+++|+|++++ .|+||++||.++..+
T Consensus 77 g~iDilVnnAg~~~~-~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~G~II~isS~~~~~~---------- 143 (243)
T d1q7ba_ 77 GEVDILVNNAGITRD-NLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKR--HGRIITIGSVVGTMG---------- 143 (243)
T ss_dssp CSCSEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHHHC----------
T ss_pred CCcceehhhhhhccc-cccccccccccccccceeechhhhhHHHHHHHHHHcC--CCEeeeecchhhcCC----------
Confidence 999999999998654 7888999999999999999999999999999998876 589999999998754
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.++..+|++||+|+.+|+++++.|+ .++|||||+|+||+|+|++........
T Consensus 144 -------------------------~~~~~~Y~asKaal~~lt~~lA~el-a~~gIrVN~I~PG~i~T~~~~~~~~~~-- 195 (243)
T d1q7ba_ 144 -------------------------NGGQANYAAAKAGLIGFSKSLAREV-ASRGITVNVVAPGFIETDMTRALSDDQ-- 195 (243)
T ss_dssp -------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHTSCHHH--
T ss_pred -------------------------CCCCHHHHHHHHHHHHHHHHHHHHh-CccCeEEEEEecceEechhhhhhhhhH--
Confidence 3678899999999999999999999 678999999999999998753221111
Q ss_pred hhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 323 LLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
......+.+..++.+|||+|+.+++|
T Consensus 196 -~~~~~~~~pl~R~~~pedvA~~v~fL 221 (243)
T d1q7ba_ 196 -RAGILAQVPAGRLGGAQEIANAVAFL 221 (243)
T ss_dssp -HHHHHTTCTTSSCBCHHHHHHHHHHH
T ss_pred -HHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 01111222346678999999988764
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=2.9e-44 Score=319.83 Aligned_cols=227 Identities=19% Similarity=0.176 Sum_probs=174.6
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
+.+|+||++|||||++|||+++|+.|+++|+ +|++++|+.++++++.+++...+.++.++.||++|+++++++++++.+
T Consensus 3 ~F~LkgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 81 (259)
T d1xq1a_ 3 RWSLKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSS 81 (259)
T ss_dssp TTCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999999999996 999999999999999999887788899999999999999999999998
Q ss_pred cC-CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCC
Q 018819 161 SG-RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (350)
Q Consensus 161 ~~-g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (350)
++ |++|+||||||+... .++.+++.++|++++++|+.|+++++|+++|+|++++ .|+||++||+.+..+
T Consensus 82 ~~~g~idilvnnAG~~~~-~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~--~G~Iv~isS~~~~~~------- 151 (259)
T d1xq1a_ 82 MFGGKLDILINNLGAIRS-KPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG--CGNIIFMSSIAGVVS------- 151 (259)
T ss_dssp HHTTCCSEEEEECCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SCEEEEEC--------------
T ss_pred HhCCCcccccccccccCC-CchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccc--ccccccccccccccc-------
Confidence 87 789999999999755 7888999999999999999999999999999998876 589999999998754
Q ss_pred CCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchh
Q 018819 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (350)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~ 319 (350)
.++...|++||+|+.+|+++++.|+ .++|||||+|+||+|+|++......+
T Consensus 152 ----------------------------~~~~~~Y~asKaal~~lt~~lA~e~-~~~gIrVN~V~PG~i~T~~~~~~~~~ 202 (259)
T d1xq1a_ 152 ----------------------------ASVGSIYSATKGALNQLARNLACEW-ASDGIRANAVAPAVIATPLAEAVYDD 202 (259)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEECCSCC----------
T ss_pred ----------------------------ccccccccccccchhhhhHHHHHHh-cccCeEEEEeccCcccCHHhhhhchH
Confidence 3577899999999999999999999 67899999999999999976332111
Q ss_pred hHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
. .........+..++.+|||+|+.+++|
T Consensus 203 ~--~~~~~~~~~pl~R~~~pedvA~~v~fL 230 (259)
T d1xq1a_ 203 E--FKKVVISRKPLGRFGEPEEVSSLVAFL 230 (259)
T ss_dssp -----------------CCGGGGHHHHHHH
T ss_pred H--HHHHHHhCCCCCCCcCHHHHHHHHHHH
Confidence 1 111112223345677899999887764
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=100.00 E-value=4.7e-44 Score=318.68 Aligned_cols=227 Identities=19% Similarity=0.172 Sum_probs=192.5
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh-hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~-~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+|+||++|||||++|||+++|+.|+++|+ +|++++|+. +.++++.++++..+.++.+++||++|+++++++++++.++
T Consensus 4 dL~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~ 82 (261)
T d1geea_ 4 DLEGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKE 82 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999999999996 899999875 4677788888888889999999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
+|+||+||||||+..+ .++.+++.++|++++++|+.|+++++|+++|+|.+++. +++||++||.++..+
T Consensus 83 ~G~iDiLVnnAG~~~~-~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~-g~~Iv~isS~~~~~~--------- 151 (261)
T d1geea_ 83 FGKLDVMINNAGLENP-VSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDI-KGTVINMSSVHEKIP--------- 151 (261)
T ss_dssp HSCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-CCEEEEECCGGGTSC---------
T ss_pred hCCCCEeeccceecCC-cchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccc-cccccccccchhccc---------
Confidence 9999999999999755 78889999999999999999999999999999988763 346999999998753
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.++..+|++||+|+.+|+++++.|+ .++||+||+|+||+|+|++......+.
T Consensus 152 --------------------------~~~~~~Y~asKaal~~lt~~lA~e~-~~~gIrVN~I~PG~v~T~~~~~~~~~~- 203 (261)
T d1geea_ 152 --------------------------WPLFVHYAASKGGMKLMTETLALEY-APKGIRVNNIGPGAINTPINAEKFADP- 203 (261)
T ss_dssp --------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCSGGGHHHHHSH-
T ss_pred --------------------------CccccccccCCccchhhHHHHHHHh-hhhCcEEEEEeeCcCcCHhHhhhcCCH-
Confidence 4678999999999999999999999 678999999999999999763321110
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..........+..++.+|||+|+.+++|
T Consensus 204 ~~~~~~~~~~pl~R~~~pediA~~v~fL 231 (261)
T d1geea_ 204 EQRADVESMIPMGYIGEPEEIAAVAAWL 231 (261)
T ss_dssp HHHHHHHTTCTTSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 1111111122346678999999988764
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=100.00 E-value=4.4e-44 Score=318.34 Aligned_cols=226 Identities=17% Similarity=0.156 Sum_probs=190.7
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
|.|+||++|||||++|||+++|+.|+++|+ +|++++|+.++++++.+++ +.++.+++||++|+++++++++++.++
T Consensus 1 M~L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~---~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 76 (256)
T d1k2wa_ 1 MRLDGKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAAEI---GPAACAIALDVTDQASIDRCVAELLDR 76 (256)
T ss_dssp CTTTTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHHHH---CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---CCceEEEEeeCCCHHHHHHHHHHHHHH
Confidence 458999999999999999999999999995 9999999999888888877 467899999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
+|+||+||||||+... .++.+++.++|++++++|+.|+++++|+++|.|.+++. +|+||++||.++..+
T Consensus 77 ~g~iDilVnnAg~~~~-~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~-~g~Iv~isS~~~~~~--------- 145 (256)
T d1k2wa_ 77 WGSIDILVNNAALFDL-APIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGR-GGKIINMASQAGRRG--------- 145 (256)
T ss_dssp HSCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-CEEEEEECCGGGTSC---------
T ss_pred hCCccEEEeecccccc-cccccCCHHHHHhhhceeeeccccchhhccchhHHhcc-CCccccccchhhccc---------
Confidence 9999999999998754 78889999999999999999999999999998765432 489999999998754
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.++...|++||+|+.+|+++++.|+ .++|||||+|+||+|+|+++..-.....
T Consensus 146 --------------------------~~~~~~Y~asKaal~~lt~~lA~el-~~~gIrVN~V~PG~i~T~~~~~~~~~~~ 198 (256)
T d1k2wa_ 146 --------------------------EALVGVYCATKAAVISLTQSAGLNL-IRHGINVNAIAPGVVDGEHWDGVDAKFA 198 (256)
T ss_dssp --------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCCTTHHHHHHHHH
T ss_pred --------------------------cccccchhhhhhHHHHHHHHHHHHh-cccCeEEEEEecCCCCchhhhhhhhhhh
Confidence 3678999999999999999999999 6789999999999999997532111100
Q ss_pred --------HhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 322 --------RLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 --------~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..........+..++.+|+|+|+.+++|
T Consensus 199 ~~~~~~~~~~~~~~~~~~PlgR~~~p~evA~~v~fL 234 (256)
T d1k2wa_ 199 DYENLPRGEKKRQVGAAVPFGRMGRAEDLTGMAIFL 234 (256)
T ss_dssp HHHTCCTTHHHHHHHHHSTTSSCBCHHHHHHHHHHT
T ss_pred hhccCChHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 0001111222346788999999988765
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-44 Score=318.30 Aligned_cols=223 Identities=20% Similarity=0.230 Sum_probs=189.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
+|+||++|||||++|||+++|+.|+++|+ +|++++|+++.++++.+++. ++.++.||++|+++++++++++.+++
T Consensus 3 rl~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~----~~~~~~~Dvs~~~~v~~~~~~~~~~~ 77 (250)
T d1ydea1 3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQELP----GAVFILCDVTQEDDVKTLVSETIRRF 77 (250)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCT----TEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcC----CCeEEEccCCCHHHHHHHHHHHHHhc
Confidence 57999999999999999999999999996 99999999988888877764 57899999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
|+||+||||||+.....++++++.++|++++++|+.|+++++|+++|+|++++ |+||++||+++..+
T Consensus 78 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~---G~Ii~isS~~~~~~---------- 144 (250)
T d1ydea1 78 GRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQ---GNVINISSLVGAIG---------- 144 (250)
T ss_dssp SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCHHHHHC----------
T ss_pred CCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCC---CCCccccccccccc----------
Confidence 99999999999865556788899999999999999999999999999998753 79999999998753
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccccc--chhh
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE--HIPL 320 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~--~~~~ 320 (350)
.+++..|++||+|+.+|+++++.|+ .++|||||+|+||+|+|+++..- ..+.
T Consensus 145 -------------------------~~~~~~Y~asKaal~~lt~~lA~e~-a~~gIrVN~I~PG~i~T~~~~~~~~~~~~ 198 (250)
T d1ydea1 145 -------------------------QAQAVPYVATKGAVTAMTKALALDE-SPYGVRVNCISPGNIWTPLWEELAALMPD 198 (250)
T ss_dssp -------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCCHHHHHHHTTSSS
T ss_pred -------------------------ccCcchhHHHHhhHHHHHHHHHHHh-cccCeEEEEEeeCCCCChhHHHHhhcCCC
Confidence 3678899999999999999999999 77899999999999999875221 1111
Q ss_pred -HHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 321 -FRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 -~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
...........+..++.+|+|+|+.+++|
T Consensus 199 ~~~~~~~~~~~~pl~R~g~p~eva~~v~fL 228 (250)
T d1ydea1 199 PRASIREGMLAQPLGRMGQPAEVGAAAVFL 228 (250)
T ss_dssp HHHHHHHHHHTSTTSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 11111122223346788999999988764
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=100.00 E-value=7.5e-44 Score=315.81 Aligned_cols=226 Identities=21% Similarity=0.215 Sum_probs=192.5
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.|+||++|||||++|||+++|+.|+++|+ +|++++|+.+.++++.+++.. +.++.+++||++|+++++++++++.+++
T Consensus 3 rL~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (251)
T d1zk4a1 3 RLDGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGT-PDQIQFFQHDSSDEDGWTKLFDATEKAF 80 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCC-TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCC-CCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 47999999999999999999999999996 899999999999998888865 4579999999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
|+||+||||||.... .++.+++.++|++++++|+.|+++++++++|.|++++. +|+||++||+++..+
T Consensus 81 G~iDiLVnnAg~~~~-~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~-gg~Ii~isS~~~~~~---------- 148 (251)
T d1zk4a1 81 GPVSTLVNNAGIAVN-KSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGL-GASIINMSSIEGFVG---------- 148 (251)
T ss_dssp SSCCEEEECCCCCCC-CCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSS-CEEEEEECCGGGTSC----------
T ss_pred CCceEEEeccccccc-cchhcccccchhhhccccccccchhHHHHHHHHHhcCC-CCceEeeeccceecc----------
Confidence 999999999999754 78999999999999999999999999999999988763 358999999998754
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhc-CCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFH-EETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~-~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.++...|++||+++.+|+++++.|+. .++|||||+|+||+|+|++......+.
T Consensus 149 -------------------------~~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~~~~~~~~~~- 202 (251)
T d1zk4a1 149 -------------------------DPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPGAE- 202 (251)
T ss_dssp -------------------------CTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTTHH-
T ss_pred -------------------------CCCchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEeCCCCCChhHHhcCCHH-
Confidence 36788999999999999999999852 578999999999999998753321111
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.......+.+..++.+|||+|+.+++|
T Consensus 203 -~~~~~~~~~pl~R~~~pedvA~~v~fL 229 (251)
T d1zk4a1 203 -EAMSQRTKTPMGHIGEPNDIAYICVYL 229 (251)
T ss_dssp -HHHTSTTTCTTSSCBCHHHHHHHHHHH
T ss_pred -HHHHHHhCCCCCCCcCHHHHHHHHHHH
Confidence 111111222346678999999988764
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=4.2e-44 Score=315.60 Aligned_cols=216 Identities=18% Similarity=0.195 Sum_probs=188.5
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.|+||++|||||++|||+++|+.|+++|+ +|++++|+.++++++.+++. .++.+++||++|+++++++++++.+++
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 78 (244)
T d1nffa_ 3 RLTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELA---DAARYVHLDVTQPAQWKAAVDTAVTAF 78 (244)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTG---GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhh---CcceEEEeecCCHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999996 89999999999888888774 468899999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
|++|+||||||+... .++.+++.++|++++++|+.|+++++|.+.|.|.+++ .|+||++||+++..+
T Consensus 79 g~idilinnAG~~~~-~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~G~Ii~isS~~~~~~---------- 145 (244)
T d1nffa_ 79 GGLHVLVNNAGILNI-GTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAG--RGSIINISSIEGLAG---------- 145 (244)
T ss_dssp SCCCEEEECCCCCCC-BCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTSC----------
T ss_pred CCCeEEEECCcccCC-CchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcC--cceEEeccccccccc----------
Confidence 999999999998654 7889999999999999999999999999999998876 589999999998754
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.++...|++||+++.+|+++++.|+ .++|||||+|+||+|+|++.....
T Consensus 146 -------------------------~~~~~~Y~asKaal~~ltk~lA~el-~~~gIrVN~I~PG~i~T~~~~~~~----- 194 (244)
T d1nffa_ 146 -------------------------TVACHGYTATKFAVRGLTKSTALEL-GPSGIRVNSIHPGLVKTPMTDWVP----- 194 (244)
T ss_dssp -------------------------CTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCSGGGTTSC-----
T ss_pred -------------------------cccccchhhHHHHHHHHHHHHHHHh-cccCEEEEEEeeCCccChhHhhhh-----
Confidence 3678899999999999999999999 778999999999999999752211
Q ss_pred hhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 323 LLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
....+.+..++.+|+|+|+.+++|
T Consensus 195 ---~~~~~~pl~R~~~p~diA~~v~fL 218 (244)
T d1nffa_ 195 ---EDIFQTALGRAAEPVEVSNLVVYL 218 (244)
T ss_dssp ---TTCSCCSSSSCBCHHHHHHHHHHH
T ss_pred ---HHHHhccccCCCCHHHHHHHHHHH
Confidence 011122235567888888877654
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=3.9e-44 Score=319.04 Aligned_cols=225 Identities=21% Similarity=0.223 Sum_probs=191.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.||++|||||++|||+++|+.|+++|+ +|++++|+.+.++++.++++..+.++.+++||++|+++++++++++.+++|+
T Consensus 1 DgKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 79 (257)
T d2rhca1 1 DSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGP 79 (257)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 479999999999999999999999996 8999999999999999999888889999999999999999999999999999
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHH--HhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDD--LKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~--~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
||+||||||+... .++.+++.++|++++++|+.|+++++|+++|+ |.+++ .|+||++||..+..+
T Consensus 80 iDilVnnAG~~~~-~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~--~g~Ii~i~S~~~~~~---------- 146 (257)
T d2rhca1 80 VDVLVNNAGRPGG-GATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERG--TGRIVNIASTGGKQG---------- 146 (257)
T ss_dssp CSEEEECCCCCCC-SCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHT--EEEEEEECCGGGTSC----------
T ss_pred CCEEEecccccCC-CChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcC--Ccccccccccccccc----------
Confidence 9999999998754 78889999999999999999999999999997 44443 479999999998764
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH-
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF- 321 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~- 321 (350)
.+++..|++||+|+.+|+++++.|+ .++|||||+|+||+|+|++...-.....
T Consensus 147 -------------------------~~~~~~Y~asKaal~~ltk~lA~el-~~~gIrVN~I~PG~i~T~~~~~~~~~~~~ 200 (257)
T d2rhca1 147 -------------------------VVHAAPYSASKHGVVGFTKALGLEL-ARTGITVNAVCPGFVETPMAASVREHYSD 200 (257)
T ss_dssp -------------------------CTTCHHHHHHHHHHHHHHHHHHHHT-TTSEEEEEEEEECSBCSHHHHHHHHHHHH
T ss_pred -------------------------cccchhHHHHHHHHHHHHHHHHHHh-hhhCcEEEEEeeCCCCCHHHHHHHhhhhh
Confidence 4688999999999999999999999 7789999999999999997532111100
Q ss_pred -------HhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 322 -------RLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 -------~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..........+..++.+|+|+|+.+++|
T Consensus 201 ~~~~~~~e~~~~~~~~~PlgR~~~pedia~~v~fL 235 (257)
T d2rhca1 201 IWEVSTEEAFDRITARVPIGRYVQPSEVAEMVAYL 235 (257)
T ss_dssp HTTCCHHHHHHHHHTTSTTSSCBCHHHHHHHHHHH
T ss_pred hcccChHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 0001111122236678999999988765
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=100.00 E-value=5.5e-44 Score=317.65 Aligned_cols=224 Identities=19% Similarity=0.163 Sum_probs=190.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
|++|||||++|||+++|+.|+++|+ +|++++|+.++++++.++++..+.++.+++||++|+++++++++++.+++|+||
T Consensus 2 KValITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 80 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFD 80 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCcc
Confidence 6899999999999999999999996 999999999999999999988888999999999999999999999999999999
Q ss_pred EEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccc
Q 018819 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (350)
Q Consensus 167 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (350)
+||||||+.. ..++.+++.++|++++++|+.|+++++|+++|+|.+++. +|+||++||.++..+
T Consensus 81 ilVnnAG~~~-~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~-~g~Iv~isS~~~~~~-------------- 144 (255)
T d1gega_ 81 VIVNNAGVAP-STPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGH-GGKIINACSQAGHVG-------------- 144 (255)
T ss_dssp EEEECCCCCC-CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-CEEEEEECCGGGTSC--------------
T ss_pred EEEecccccc-cCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhcc-ccccccccchhhccc--------------
Confidence 9999999864 478899999999999999999999999999998776542 478999999998753
Q ss_pred cccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH-----
Q 018819 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF----- 321 (350)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~----- 321 (350)
.+++..|++||+|+.+|+++++.|+ .++|||||+|+||+|+|+++........
T Consensus 145 ---------------------~~~~~~Y~asKaal~~ltk~lA~el-~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~ 202 (255)
T d1gega_ 145 ---------------------NPELAVYSSSKFAVRGLTQTAARDL-APLGITVNGYCPGIVKTPMWAEIDRQVSEAAGK 202 (255)
T ss_dssp ---------------------CTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTC
T ss_pred ---------------------CcccccchhCHHHHHhhHHHHHHHh-hhhCcEEEEEecCcccChHHhhhhhhhHhhhcc
Confidence 4688999999999999999999999 6789999999999999997532111100
Q ss_pred ---HhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 322 ---RLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ---~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..........+..++.+|+|+|+.+++|
T Consensus 203 ~~~~~~~~~~~~~pl~R~~~peevA~~v~fL 233 (255)
T d1gega_ 203 PLGYGTAEFAKRITLGRLSEPEDVAACVSYL 233 (255)
T ss_dssp CTTHHHHHHHTTCTTCSCBCHHHHHHHHHHH
T ss_pred cchhHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 0000111122346678999999988764
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=100.00 E-value=5.7e-44 Score=318.52 Aligned_cols=226 Identities=22% Similarity=0.227 Sum_probs=185.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC-hhHHHHHHHHhc-cCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD-FLKAERAAKSAG-MAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~-~~~~~~~~~~l~-~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
|+||++|||||++|||+++|+.|+++|+ +|++++|+ .+.++++.+++. ..+.++.+++||++|+++++++++++.++
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQ 80 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999999996 89999987 456667666664 34678999999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
+|+||+||||||+... .++.+++.++|++++++|+.|+++++|+++|+|++++ .|+||++||.++..+
T Consensus 81 ~G~iDiLVnnAG~~~~-~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~--~G~Iv~isS~~~~~~--------- 148 (260)
T d1x1ta1 81 MGRIDILVNNAGIQHT-ALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG--FGRIINIASAHGLVA--------- 148 (260)
T ss_dssp HSCCSEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTSC---------
T ss_pred hCCCcEEEeecccccC-CchhhhhHHhhhhhhhccccccccccchhhhhHhhcC--CceEeecccccceec---------
Confidence 9999999999998754 7889999999999999999999999999999999876 589999999998864
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.+++.+|++||+|+.+|+++++.|+ .++||+||+|+||+|+|+++........
T Consensus 149 --------------------------~~~~~~Y~asKaal~~lt~~lA~el-~~~gIrVN~I~PG~i~T~~~~~~~~~~~ 201 (260)
T d1x1ta1 149 --------------------------SANKSAYVAAKHGVVGFTKVTALET-AGQGITANAICPGWVRTPLVEKQISALA 201 (260)
T ss_dssp --------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-TTTTEEEEEEEECCBCC-----------
T ss_pred --------------------------cCCcchhhhhhhhHHHhHHHHHHHh-chhCcEEEEEecCCCCChhhhhhhhhhh
Confidence 3678899999999999999999999 6789999999999999997633211100
Q ss_pred --------Hhhhh-hhHHhhhcCccchhhhhhhcccc
Q 018819 322 --------RLLFP-PFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 --------~~~~~-~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..... .....+..++.+|+|+|+.+++|
T Consensus 202 ~~~~~~~~~~~~~~~~~~~Pl~R~g~pediA~~v~fL 238 (260)
T d1x1ta1 202 EKNGVDQETAARELLSEKQPSLQFVTPEQLGGTAVFL 238 (260)
T ss_dssp -------------CHHHHCTTCCCBCHHHHHHHHHHH
T ss_pred hhcCCChHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 00001 11222346778999999988764
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=100.00 E-value=6.8e-44 Score=313.92 Aligned_cols=212 Identities=18% Similarity=0.259 Sum_probs=187.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCc------EEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 87 GSVIITGASSGLGLATAKALAETGKW------HIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~------~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
+++|||||++|||+++|+.|+++|++ .|++++|+.++++++.++++..+.++.++.||++|+++++++++++.+
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVE 81 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999974 389999999999999999988888999999999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
++|++|+||||||+... .++.+.+.++|++++++|+.|+++++|+++|+|++++ +|+||++||+++..+
T Consensus 82 ~~g~iDilvnnAg~~~~-~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~--~G~Ii~isS~~~~~~-------- 150 (240)
T d2bd0a1 82 RYGHIDCLVNNAGVGRF-GALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQH--SGHIFFITSVAATKA-------- 150 (240)
T ss_dssp HTSCCSEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTSC--------
T ss_pred HcCCcceeecccccccC-CccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcC--CCceEEEechhhcCC--------
Confidence 99999999999998654 7889999999999999999999999999999998876 589999999998864
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~ 320 (350)
.+++..|++||+|+.+|+++++.|+ +++||+||+|+||+|+|+++..-...
T Consensus 151 ---------------------------~~~~~~Y~asK~al~~lt~~la~el-~~~gIrvn~i~PG~v~T~~~~~~~~~- 201 (240)
T d2bd0a1 151 ---------------------------FRHSSIYCMSKFGQRGLVETMRLYA-RKCNVRITDVQPGAVYTPMWGKVDDE- 201 (240)
T ss_dssp ---------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-TTTTEEEEEEEECCBCSTTTCCCCST-
T ss_pred ---------------------------CCCChHHHHHHHHHHHHHHHHHHHh-CcCCeEEEEeeeCcccCchhhhcCHh-
Confidence 4688999999999999999999999 67899999999999999976321111
Q ss_pred HHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 ~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
....+.+|||+|+.++++
T Consensus 202 -----------~~~~~~~PedvA~~v~~l 219 (240)
T d2bd0a1 202 -----------MQALMMMPEDIAAPVVQA 219 (240)
T ss_dssp -----------TGGGSBCHHHHHHHHHHH
T ss_pred -----------hHhcCCCHHHHHHHHHHH
Confidence 012356899999887753
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=100.00 E-value=5.2e-44 Score=316.82 Aligned_cols=221 Identities=19% Similarity=0.160 Sum_probs=186.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
+|+||++|||||++|||+++|++|+++|+ +|++++|+.+++++..+++ +.++.+++||++|+++++++++++.+++
T Consensus 2 dL~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 77 (254)
T d1hdca_ 2 DLSGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATAREL---GDAARYQHLDVTIEEDWQRVVAYAREEF 77 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT---GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---CCceEEEEcccCCHHHHHHHHHHHHHHc
Confidence 57999999999999999999999999996 8999999998888777766 4678999999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
|+||+||||||+... .++.+.+.++|++++++|+.|+++++|+++|+|++++ .|+||++||+++..+
T Consensus 78 g~iDilVnnAg~~~~-~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~--~G~II~isS~~~~~~---------- 144 (254)
T d1hdca_ 78 GSVDGLVNNAGISTG-MFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG--GGSIVNISSAAGLMG---------- 144 (254)
T ss_dssp SCCCEEEECCCCCCC-SCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTSC----------
T ss_pred CCccEEEecCccccc-cccccccccccchhhhHHhhHHHHHHHHHHHHHhhcC--CCeecccccchhccc----------
Confidence 999999999999654 7888999999999999999999999999999998876 589999999998753
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.++...|++||+|+.+|+++++.|+ .++|||||+|+||+|+|+++.......
T Consensus 145 -------------------------~~~~~~Y~asKaal~~lt~~lA~e~-a~~gIrVN~I~PG~v~T~~~~~~~~~~-- 196 (254)
T d1hdca_ 145 -------------------------LALTSSYGASKWGVRGLSKLAAVEL-GTDRIRVNSVHPGMTYTPMTAETGIRQ-- 196 (254)
T ss_dssp -------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHHHTCCC--
T ss_pred -------------------------ccchhhHHHHHHHHHHHHHHHHHHh-CCCceEEEEeeeCcccCccchhcCHHH--
Confidence 4678899999999999999999999 678999999999999998753211110
Q ss_pred hhhhhhHHhhhcCcc-chhhhhhhcccc
Q 018819 323 LLFPPFQKYITKGYV-SEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~~~~~~~~~-s~~~~a~~i~~~ 349 (350)
......+....++. .|+|+|+.+++|
T Consensus 197 -~~~~~~~~pl~R~g~~PedvA~~v~fL 223 (254)
T d1hdca_ 197 -GEGNYPNTPMGRVGNEPGEIAGAVVKL 223 (254)
T ss_dssp -STTSCTTSTTSSCB-CHHHHHHHHHHH
T ss_pred -HHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 00111111223343 588888877654
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.2e-43 Score=312.01 Aligned_cols=221 Identities=20% Similarity=0.203 Sum_probs=183.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.|+||++|||||++|||+++|+.|+++|+ +|++++|+.+..+ ..+++ ...+++||++|+++++++++++.+++
T Consensus 2 ~l~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~-~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~ 74 (248)
T d2d1ya1 2 LFAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKE-VAEAI-----GGAFFQVDLEDERERVRFVEEAAYAL 74 (248)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHH-HHHHH-----TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHH-HHHHc-----CCeEEEEeCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999999999999996 9999999876543 34444 24678999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
|+||+||||||+..+ .++.+++.++|++++++|+.|+++++|+++|+|++++ +|+||++||.++..+
T Consensus 75 G~iDiLVnnAG~~~~-~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~--~G~Ii~isS~~~~~~---------- 141 (248)
T d2d1ya1 75 GRVDVLVNNAAIAAP-GSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVG--GGAIVNVASVQGLFA---------- 141 (248)
T ss_dssp SCCCEEEECCCCCCC-BCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT--CEEEEEECCGGGTSB----------
T ss_pred CCCCeEEEeCcCCCC-CChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccc--ccccccccccccccc----------
Confidence 999999999999755 7888999999999999999999999999999999876 589999999998864
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch--hh
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI--PL 320 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~--~~ 320 (350)
.++...|++||+|+.+|++.++.|+ .++|||||+|+||+|+|++...... +.
T Consensus 142 -------------------------~~~~~~Y~asKaal~~ltk~lA~el-~~~gIrVN~I~PG~v~T~~~~~~~~~~~~ 195 (248)
T d2d1ya1 142 -------------------------EQENAAYNASKGGLVNLTRSLALDL-APLRIRVNAVAPGAIATEAVLEAIALSPD 195 (248)
T ss_dssp -------------------------CTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHHHHC----
T ss_pred -------------------------ccccchhHHHHHHHHHHHHHHHHHh-hhhCcEEEEEeeCCCCCchHHHHhhcCCC
Confidence 3678999999999999999999999 6789999999999999987632111 00
Q ss_pred -HHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 321 -FRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 -~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
...........+..++.+|||+|+.+++|
T Consensus 196 ~~~~~~~~~~~~pl~R~~~pedia~~v~fL 225 (248)
T d2d1ya1 196 PERTRRDWEDLHALRRLGKPEEVAEAVLFL 225 (248)
T ss_dssp ----CHHHHTTSTTSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 01111111122246678999999988764
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.9e-43 Score=309.39 Aligned_cols=219 Identities=19% Similarity=0.152 Sum_probs=184.6
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
|.|+||++|||||++|||+++|+.|+++|+ +|++++|+.+++++..+++ +..+++||++|+++++++++++.++
T Consensus 1 M~L~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~~~~l~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~ 74 (242)
T d1ulsa_ 1 MRLKDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAV-----GAHPVVMDVADPASVERGFAEALAH 74 (242)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT-----TCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc-----CCeEEEEecCCHHHHHHHHHHHHHh
Confidence 468999999999999999999999999996 8999999998888877765 3578899999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
+|+||+||||||+... .++.+++.++|++++++|+.|+++++|+++|.|.+++ .+.|+++||. +..+
T Consensus 75 ~g~iDilVnnAG~~~~-~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~~~i~~~ss~-~~~~--------- 141 (242)
T d1ulsa_ 75 LGRLDGVVHYAGITRD-NFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKN--PGSIVLTASR-VYLG--------- 141 (242)
T ss_dssp HSSCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--CEEEEEECCG-GGGC---------
T ss_pred cCCceEEEECCccccc-CchhhCcchhhhccccccchhhhhhhhhccccccccc--cceeeeeccc-cccC---------
Confidence 9999999999999754 7888999999999999999999999999999998876 4567776664 3322
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.++..+|++||+|+.+|+++++.|+ .++|||||+|+||+|+|++........
T Consensus 142 --------------------------~~~~~~Y~asKaal~~ltk~lA~el-a~~gIrVN~I~PG~v~T~~~~~~~~~~- 193 (242)
T d1ulsa_ 142 --------------------------NLGQANYAASMAGVVGLTRTLALEL-GRWGIRVNTLAPGFIETRMTAKVPEKV- 193 (242)
T ss_dssp --------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCTTTSSSCHHH-
T ss_pred --------------------------CCCCcchHHHHHHHHHHHHHHHHHH-hhhCcEEEEEeeCcccChhhhcCCHHH-
Confidence 3678899999999999999999999 678999999999999999764321111
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
........+..++.+|||+|+.+++|
T Consensus 194 --~~~~~~~~pl~R~~~pedia~~v~fL 219 (242)
T d1ulsa_ 194 --REKAIAATPLGRAGKPLEVAYAALFL 219 (242)
T ss_dssp --HHHHHHTCTTCSCBCHHHHHHHHHHH
T ss_pred --HHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 11122223346778999999988764
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=100.00 E-value=9.2e-44 Score=313.81 Aligned_cols=220 Identities=18% Similarity=0.165 Sum_probs=188.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEE-ecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMA-CRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~-~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
+++|||||++|||+++|++|+++|+ +|++. .|+.+.++++.++++..+.++.+++||++|+++++++++++.+++|++
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 80 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTI 80 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 4899999999999999999999996 77765 667778888888888778899999999999999999999999999999
Q ss_pred cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcc
Q 018819 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (350)
|+||||||.... .++.+++.++|++++++|+.|+++++|+++|+|++++ +|+||++||+++..+
T Consensus 81 DiLVnnAg~~~~-~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~G~IVnisS~~~~~~------------- 144 (244)
T d1edoa_ 81 DVVVNNAGITRD-TLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKR--KGRIINIASVVGLIG------------- 144 (244)
T ss_dssp SEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCTHHHHC-------------
T ss_pred Cccccccccccc-cchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcC--CcEEEEEcChhhcCC-------------
Confidence 999999998754 7889999999999999999999999999999998876 589999999998764
Q ss_pred ccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhhh
Q 018819 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 325 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~ 325 (350)
.++...|++||+|+.+|+++++.|+ .++|||||+|+||+|+|++...-.... ..
T Consensus 145 ----------------------~~~~~~Y~asKaal~~ltk~lA~el-~~~gIrvN~I~PG~i~T~~~~~~~~~~---~~ 198 (244)
T d1edoa_ 145 ----------------------NIGQANYAAAKAGVIGFSKTAAREG-ASRNINVNVVCPGFIASDMTAKLGEDM---EK 198 (244)
T ss_dssp ----------------------CTTCHHHHHHHHHHHHHHHHHHHHH-HTTTEEEEEEEECSBCSHHHHTTCHHH---HH
T ss_pred ----------------------CCCCHHHHHHHHHHHHChHHHHHHH-hhhCcEEEEEecceeccHHHHHhhHHH---HH
Confidence 3678899999999999999999999 678999999999999998753211111 01
Q ss_pred hhhHHhhhcCccchhhhhhhcccc
Q 018819 326 PPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 326 ~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
......+..++.+|+|+|+.+++|
T Consensus 199 ~~~~~~pl~R~~~p~dvA~~v~fL 222 (244)
T d1edoa_ 199 KILGTIPLGRTGQPENVAGLVEFL 222 (244)
T ss_dssp HHHTSCTTCSCBCHHHHHHHHHHH
T ss_pred HHHhcCCCCCCcCHHHHHHHHHHH
Confidence 111222346678999999988764
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=100.00 E-value=1.5e-42 Score=310.63 Aligned_cols=228 Identities=19% Similarity=0.216 Sum_probs=189.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.|+||++|||||++|||+++|+.|+++|+ +|++++|+.++++++.+++...+ .+.++.||++|+++++++++++.+++
T Consensus 3 rL~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (268)
T d2bgka1 3 RLQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPD-VISFVHCDVTKDEDVRNLVDTTIAKH 80 (268)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTT-TEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCC-ceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 57999999999999999999999999996 89999999999999999987654 57889999999999999999999999
Q ss_pred CCCcEEEEccccCCCC-CCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPT-AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~-~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
|++|++|||||+.... ..+.+.+.++|++++++|+.|+++++|+++|+|.+++ .|+||++||+++..+.
T Consensus 81 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~--~g~ii~iss~~~~~~~-------- 150 (268)
T d2bgka1 81 GKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAK--KGSIVFTASISSFTAG-------- 150 (268)
T ss_dssp SCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGT--CEEEEEECCGGGTCCC--------
T ss_pred CCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcC--CCCccccccccccccc--------
Confidence 9999999999986542 3577899999999999999999999999999998876 5899999999887542
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.+....|++||+|+.+|+++++.|+ .++|||||+|+||+|+|+++........
T Consensus 151 --------------------------~~~~~~Y~asKaal~~lt~~lA~el-~~~gIrVN~I~PG~i~T~~~~~~~~~~~ 203 (268)
T d2bgka1 151 --------------------------EGVSHVYTATKHAVLGLTTSLCTEL-GEYGIRVNCVSPYIVASPLLTDVFGVDS 203 (268)
T ss_dssp --------------------------TTSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESCCSCCCCTTSSSCCH
T ss_pred --------------------------cccccccchhHHHHHhCHHHHHHHh-ChhCeEEEecCCCCccChHHhhhhcCCH
Confidence 1234589999999999999999999 6789999999999999997643221111
Q ss_pred HhhhhhhHH--hhhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQK--YITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~~--~~~~~~~s~~~~a~~i~~~ 349 (350)
......... .+..++.+|||+|+.+++|
T Consensus 204 ~~~~~~~~~~~~~~gr~~~pedvA~~v~fL 233 (268)
T d2bgka1 204 SRVEELAHQAANLKGTLLRAEDVADAVAYL 233 (268)
T ss_dssp HHHHHHHHHTCSSCSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCCcCHHHHHHHHHHH
Confidence 111111111 1234678999999988764
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3e-43 Score=310.04 Aligned_cols=214 Identities=19% Similarity=0.213 Sum_probs=188.6
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+++.||++|||||++|||+++|+.|+++|+ +|++++|+.++++++.++++..+.++.++.||++|+++++++++++.++
T Consensus 3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~ 81 (244)
T d1yb1a_ 3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAE 81 (244)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999999999996 9999999999999999999888889999999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
+|++|++|||||.... ..+.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||.++..+
T Consensus 82 ~g~idilinnag~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~--~G~Iv~isS~~~~~~--------- 149 (244)
T d1yb1a_ 82 IGDVSILVNNAGVVYT-SDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNN--HGHIVTVASAAGHVS--------- 149 (244)
T ss_dssp TCCCSEEEECCCCCCC-CCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCCC-CCC---------
T ss_pred cCCCceeEeecccccc-ccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcC--CceEEEeecchhcCC---------
Confidence 9999999999999765 6777899999999999999999999999999999887 589999999998853
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhc--CCCCcEEEEeeCCcccCCcccccchh
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFH--EETGIAFASLYPGCIATTGLFREHIP 319 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~~gi~v~~v~PG~v~t~~~~~~~~~ 319 (350)
.++++.|++||+|+.+|+++|+.|+. ..+||+|++|+||+|+|+++.....+
T Consensus 150 --------------------------~~~~~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~i~PG~v~T~~~~~~~~~ 203 (244)
T d1yb1a_ 150 --------------------------VPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNPSTS 203 (244)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTCTHHH
T ss_pred --------------------------CCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCCChhhhCcCcc
Confidence 47889999999999999999999983 23699999999999999876332111
Q ss_pred hHHhhhhhhHHhhhcCccchhhhhhhcc
Q 018819 320 LFRLLFPPFQKYITKGYVSEDEAGKRLA 347 (350)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~s~~~~a~~i~ 347 (350)
.....+||++|+.++
T Consensus 204 -------------~~~~~~pe~va~~i~ 218 (244)
T d1yb1a_ 204 -------------LGPTLEPEEVVNRLM 218 (244)
T ss_dssp -------------HCCCCCHHHHHHHHH
T ss_pred -------------ccCCCCHHHHHHHHH
Confidence 123457777777664
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=1e-42 Score=305.57 Aligned_cols=214 Identities=22% Similarity=0.284 Sum_probs=176.0
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+.++||++|||||++|||+++|+.|+++|+ +|++++|+.+. ..++..++||++|+++++++++++.++
T Consensus 3 psl~gK~~lITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~-----------~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 70 (237)
T d1uzma1 3 PPFVSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGA-----------PKGLFGVEVDVTDSDAVDRAFTAVEEH 70 (237)
T ss_dssp CCCCCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSCC-----------CTTSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCcch-----------hcCceEEEEecCCHHHHHHHHHHHHHh
Confidence 367999999999999999999999999996 99999998543 235678999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
+|+||+||||||+... .++.+.+.|+|++++++|+.++++++|+++|.|.+++ .|+||++||+++..+
T Consensus 71 ~g~iDiLVnnAG~~~~-~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~g~Iv~isS~~~~~~--------- 138 (237)
T d1uzma1 71 QGPVEVLVSNAGLSAD-AFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNK--FGRMIFIGSVSGLWG--------- 138 (237)
T ss_dssp HSSCSEEEEECSCCC------CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCCCC------------
T ss_pred cCCceEEEeeeccccc-ccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccC--CCceEEEcchhhccC---------
Confidence 9999999999998654 7888999999999999999999999999999999887 579999999998754
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.++...|++||+|+.+|+++++.|+ .++||+||+|+||+|+|++..... +
T Consensus 139 --------------------------~~~~~~Y~asKaal~~lt~~lA~e~-~~~gIrVN~I~PG~v~T~~~~~~~-~-- 188 (237)
T d1uzma1 139 --------------------------IGNQANYAASKAGVIGMARSIAREL-SKANVTANVVAPGYIDTDMTRALD-E-- 188 (237)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHHSC-H--
T ss_pred --------------------------CcccHHHHHHHHHHHHHHHHHHhhh-hcCCceeeeeeeCcCCChhhhccC-H--
Confidence 3678899999999999999999999 678999999999999998753211 1
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..........+..++.+|||+|+.+++|
T Consensus 189 ~~~~~~~~~~pl~R~~~pedvA~~v~fL 216 (237)
T d1uzma1 189 RIQQGALQFIPAKRVGTPAEVAGVVSFL 216 (237)
T ss_dssp HHHHHHGGGCTTCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 1111112223346788999999988764
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=100.00 E-value=3.8e-42 Score=305.92 Aligned_cols=228 Identities=21% Similarity=0.224 Sum_probs=192.6
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
.+|+||++|||||++|||+++|+.|+++|+ +|++++|+.++++++.++++..+..+.++.||++++++++++++++.++
T Consensus 2 f~L~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 80 (258)
T d1ae1a_ 2 WSLKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHV 80 (258)
T ss_dssp CCCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999999996 9999999999999999999888889999999999999999999999998
Q ss_pred C-CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 162 G-RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 162 ~-g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
+ +++|+||||||.... .++.+++.++|++++++|+.+++++++++.|.|.++. .|+||++||..+..+
T Consensus 81 ~~g~idilinnag~~~~-~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~--~g~ii~isS~~~~~~-------- 149 (258)
T d1ae1a_ 81 FDGKLNILVNNAGVVIH-KEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQ--NGNVIFLSSIAGFSA-------- 149 (258)
T ss_dssp TTSCCCEEEECCCCCCC-CCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--SEEEEEECCGGGTSC--------
T ss_pred hCCCcEEEecccccccc-CccccCCHHHHhhhhhhcccccccccccccccccccc--ccccccccccccccc--------
Confidence 8 689999999999755 7889999999999999999999999999999998876 689999999998754
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch--
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-- 318 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~-- 318 (350)
.++...|+++|+|+++|++.+++|+ .++|||||+|+||+|+|++......
T Consensus 150 ---------------------------~~~~~~Y~~sK~al~~lt~~lA~el-~~~gIrvN~I~PG~i~T~~~~~~~~~~ 201 (258)
T d1ae1a_ 150 ---------------------------LPSVSLYSASKGAINQMTKSLACEW-AKDNIRVNSVAPGVILTPLVETAIKKN 201 (258)
T ss_dssp ---------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBC-----------
T ss_pred ---------------------------cccchhHHHHHHHHHHHHHHHHHhc-CcCcEEEEEEeeCcccCcchhhhhhhh
Confidence 3678899999999999999999999 6789999999999999997633211
Q ss_pred hh-HHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 319 PL-FRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ~~-~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
+. .........+.+..++.+|+|+|+.+++|
T Consensus 202 ~~~~~~~~~~~~~~plgR~~~pediA~~v~fL 233 (258)
T d1ae1a_ 202 PHQKEEIDNFIVKTPMGRAGKPQEVSALIAFL 233 (258)
T ss_dssp --CHHHHHHHHHHSTTCSCBCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 11 11111222233447788999999988764
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=100.00 E-value=1e-42 Score=308.67 Aligned_cols=224 Identities=18% Similarity=0.186 Sum_probs=187.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.|+||++|||||++|||+++|+.|+++|+ +|++++|+.+.++++.+++. .+..+++||++|+++++++++++.+++
T Consensus 3 rL~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 78 (253)
T d1hxha_ 3 RLQGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELG---ERSMFVRHDVSSEADWTLVMAAVQRRL 78 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHC---TTEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhC---CCeEEEEeecCCHHHHHHHHHHHHHHh
Confidence 47999999999999999999999999996 89999999999888888774 568899999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
|++|+||||||+... .++.+.+.++|++++++|+.++++++|+++|+|+++ +|+||++||+++..+
T Consensus 79 g~iDilVnnAG~~~~-~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~---~G~Iv~isS~~~~~~---------- 144 (253)
T d1hxha_ 79 GTLNVLVNNAGILLP-GDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKET---GGSIINMASVSSWLP---------- 144 (253)
T ss_dssp CSCCEEEECCCCCCC-BCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT---CEEEEEECCGGGTSC----------
T ss_pred CCCCeEEecccccCC-CCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhc---CCceecccchhhhcC----------
Confidence 999999999999755 788899999999999999999999999999999764 489999999998754
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCC-CCcEEEEeeCCcccCCcccccchh-h
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEE-TGIAFASLYPGCIATTGLFREHIP-L 320 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~-~gi~v~~v~PG~v~t~~~~~~~~~-~ 320 (350)
.++..+|++||+|+.+|+++++.|+... +|||||+|+||+|+|+++...... .
T Consensus 145 -------------------------~~~~~~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~~~~~~~~~~~ 199 (253)
T d1hxha_ 145 -------------------------IEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKGV 199 (253)
T ss_dssp -------------------------CTTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCTTC
T ss_pred -------------------------ccccccccchhHHHHHHHHHHHHHHhhcCCCEEEEEEeECCCcCHhHHhhCcchh
Confidence 3678899999999999999999999422 569999999999999875321110 0
Q ss_pred -HHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 321 -FRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 -~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..............++.+|||+|+.+++|
T Consensus 200 ~~~~~~~~~~~~~~gr~~~pedvA~~v~fL 229 (253)
T d1hxha_ 200 SKEMVLHDPKLNRAGRAYMPERIAQLVLFL 229 (253)
T ss_dssp CHHHHBCBTTTBTTCCEECHHHHHHHHHHH
T ss_pred hHHHHHhCccccccCCCCCHHHHHHHHHHH
Confidence 00100001111124577899999988764
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.6e-42 Score=303.88 Aligned_cols=231 Identities=18% Similarity=0.246 Sum_probs=193.3
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCC--CceEEEEccCCCHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK--ENYTIMHLDLASLDSVRQFVDTF 158 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~--~~v~~~~~Dvs~~~~v~~~~~~~ 158 (350)
|..++||++|||||++|||+++|+.|+++|+ +|++++|+.++++++.++++..+ .++.+++||++|+++++++++++
T Consensus 5 M~~lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~ 83 (257)
T d1xg5a_ 5 MERWRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAI 83 (257)
T ss_dssp CGGGTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHH
Confidence 4468999999999999999999999999996 89999999999999999887654 57889999999999999999999
Q ss_pred HHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCC
Q 018819 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (350)
Q Consensus 159 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (350)
.+++|+||+||||||.... .++.+.+.++|++.+++|+.++++++++++|.|++.+..+|+||++||.++..+.
T Consensus 84 ~~~~g~iD~lVnnAg~~~~-~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~----- 157 (257)
T d1xg5a_ 84 RSQHSGVDICINNAGLARP-DTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVL----- 157 (257)
T ss_dssp HHHHCCCSEEEECCCCCCC-CCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCC-----
T ss_pred HHhcCCCCEEEecccccCC-CccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCCC-----
Confidence 9999999999999998754 7888999999999999999999999999999998766446899999999886431
Q ss_pred CCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhc-CCCCcEEEEeeCCcccCCcccccc
Q 018819 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFH-EETGIAFASLYPGCIATTGLFREH 317 (350)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~-~~~gi~v~~v~PG~v~t~~~~~~~ 317 (350)
|.++...|+++|+++.+|+++++.|+. .++||+||+|+||.++|++.....
T Consensus 158 ----------------------------p~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~i~t~~~~~~~ 209 (257)
T d1xg5a_ 158 ----------------------------PLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLH 209 (257)
T ss_dssp ----------------------------SCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHT
T ss_pred ----------------------------CCcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCCCCChhhhhcC
Confidence 235677899999999999999999984 567999999999999998653211
Q ss_pred hhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 318 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.. ............++.+|||+|+.+++|
T Consensus 210 ~~---~~~~~~~~~~~~r~~~pedvA~~v~fL 238 (257)
T d1xg5a_ 210 DK---DPEKAAATYEQMKCLKPEDVAEAVIYV 238 (257)
T ss_dssp TT---CHHHHHHHHC---CBCHHHHHHHHHHH
T ss_pred hh---hHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 11 011122233346678999999988764
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=4.7e-42 Score=306.73 Aligned_cols=228 Identities=18% Similarity=0.180 Sum_probs=179.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCC---CceEEEEccCCCHHHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK---ENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~---~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
.|+||++|||||++|||+++|+.|+++|+ +|++++|+.+.++++.+++...+ .++.+++||++|+++++++++++.
T Consensus 2 rl~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~ 80 (264)
T d1spxa_ 2 RFAEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTL 80 (264)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHH
Confidence 47999999999999999999999999996 89999999999999888876543 468999999999999999999999
Q ss_pred HcCCCCcEEEEccccCCC---CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCC
Q 018819 160 RSGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~---~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~ 236 (350)
+++|+||+||||||+..+ ...+.+.+.|+|++++++|+.|+++++|+++|+|++++ |.+|+++|+.+...
T Consensus 81 ~~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~---g~iI~~~S~~~~~~---- 153 (264)
T d1spxa_ 81 GKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK---GEIVNISSIASGLH---- 153 (264)
T ss_dssp HHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCTTSSSS----
T ss_pred HHhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCcccccc---Ccceeeeeeccccc----
Confidence 999999999999998532 23456779999999999999999999999999998764 67888887764321
Q ss_pred CCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccccc
Q 018819 237 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 316 (350)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~ 316 (350)
+.++...|++||+|+.+|+++++.|+ .++|||||+|+||+|+|++....
T Consensus 154 ------------------------------~~~~~~~Y~asKaal~~lt~~lA~el-~~~gIrVN~V~PG~v~T~~~~~~ 202 (264)
T d1spxa_ 154 ------------------------------ATPDFPYYSIAKAAIDQYTRNTAIDL-IQHGIRVNSISPGLVATGFGSAM 202 (264)
T ss_dssp ------------------------------CCTTSHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBCCCC----
T ss_pred ------------------------------cCCCchhhhhhhhhHHHHHHHHHHHh-cccCeEEEEEeeCCCCCcchhcc
Confidence 24678899999999999999999999 67899999999999999976332
Q ss_pred chhhH------HhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 317 HIPLF------RLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 317 ~~~~~------~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..+.. ..........+..++.+|||+|+.+++|
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~Pl~R~g~pedvA~~v~fL 241 (264)
T d1spxa_ 203 GMPEETSKKFYSTMATMKECVPAGVMGQPQDIAEVIAFL 241 (264)
T ss_dssp ----------HHHHHHHHHHCTTSSCBCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 22110 0111111222346788999999988764
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=4.5e-42 Score=308.09 Aligned_cols=226 Identities=19% Similarity=0.178 Sum_probs=184.4
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCC---CceEEEEccCCCHHHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK---ENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~---~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
.|+||++|||||++|||+++|+.|+++|+ +|++++|+.++++++.+++...+ .++.+++||++|+++++++++++.
T Consensus 2 rL~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 80 (272)
T d1xkqa_ 2 RFSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTL 80 (272)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHH
Confidence 57999999999999999999999999996 99999999999999988886543 468999999999999999999999
Q ss_pred HcCCCCcEEEEccccCCCCCCC----CCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEecc-CCCCCCC
Q 018819 160 RSGRPLDVLVCNAAVYLPTAKE----PTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI-TGNTNTL 234 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~~~~~----~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~-~~~~~~~ 234 (350)
+++|+||+||||||...+ ..+ .+.+.++|++++++|+.++++++|+++|+|++++ |.+|+++|+ ++..+
T Consensus 81 ~~~g~iDilvnnAG~~~~-~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~---g~iI~~~Ss~a~~~~-- 154 (272)
T d1xkqa_ 81 KQFGKIDVLVNNAGAAIP-DAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK---GEIVNVSSIVAGPQA-- 154 (272)
T ss_dssp HHHSCCCEEEECCCCCCC-CTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCGGGSSSC--
T ss_pred HHhCCceEEEeCCcccCc-ccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccC---CccccccchhccccC--
Confidence 999999999999998754 333 4567889999999999999999999999998764 567777664 45532
Q ss_pred CCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccc
Q 018819 235 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (350)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~ 314 (350)
.+++..|++||+|+.+|+++++.|+ .++|||||+|+||+|+|++..
T Consensus 155 ---------------------------------~~~~~~Y~asKaal~~ltk~lA~el-~~~gIrVN~I~PG~i~T~~~~ 200 (272)
T d1xkqa_ 155 ---------------------------------QPDFLYYAIAKAALDQYTRSTAIDL-AKFGIRVNSVSPGMVETGFTN 200 (272)
T ss_dssp ---------------------------------CCSSHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEECCBCSSHHH
T ss_pred ---------------------------------CCCcchhhhHHHHHHHHHHHHHHHh-cccCeEEEEEeeCCCcchhhh
Confidence 4678899999999999999999999 678999999999999999763
Q ss_pred ccchhhH-Hhhhhhh-----HHhhhcCccchhhhhhhcccc
Q 018819 315 REHIPLF-RLLFPPF-----QKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 315 ~~~~~~~-~~~~~~~-----~~~~~~~~~s~~~~a~~i~~~ 349 (350)
....+.. ....... ...+..++.+|||+|+.+++|
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~PlgR~g~pediA~~v~fL 241 (272)
T d1xkqa_ 201 AMGMPDQASQKFYNFMASHKECIPIGAAGKPEHIANIILFL 241 (272)
T ss_dssp HTTCCHHHHHHHHHHHHHCTTTCTTSSCBCHHHHHHHHHHH
T ss_pred ccCCchHHHHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH
Confidence 3221110 0000111 112235678999999888764
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=7.6e-42 Score=301.13 Aligned_cols=220 Identities=18% Similarity=0.218 Sum_probs=182.4
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
|+|+||++|||||++|||+++|+.|+++|+ +|++++|+.++++++.+++. .+.++.||++|++++++++ ++
T Consensus 1 mdl~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~----~~~~~~~Dv~~~~~v~~~~----~~ 71 (242)
T d1cyda_ 1 LNFSGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECP----GIEPVCVDLGDWDATEKAL----GG 71 (242)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHST----TCEEEECCTTCHHHHHHHH----TT
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcC----CCeEEEEeCCCHHHHHHHH----HH
Confidence 468999999999999999999999999996 99999999988888877764 5778999999999987665 46
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
+|+||+||||||+... .++.+++.++|++++++|+.++++++|.+.|.|.+++. +|+||++||.++..+
T Consensus 72 ~g~iDilVnnAg~~~~-~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~-~g~ii~isS~~~~~~--------- 140 (242)
T d1cyda_ 72 IGPVDLLVNNAALVIM-QPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGV-PGSIVNVSSMVAHVT--------- 140 (242)
T ss_dssp CCCCSEEEECCCCCCC-BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEECCGGGTSC---------
T ss_pred cCCCeEEEECCccccc-hhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcc-cCcccccchhhcccc---------
Confidence 7999999999998654 78899999999999999999999999999998655432 479999999987753
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.++...|++||+|+.+|+++++.|+ .++|||||+|+||+|+|++....... .
T Consensus 141 --------------------------~~~~~~Y~asKaal~~lt~~lA~e~-~~~gIrvN~I~PG~i~T~~~~~~~~~-~ 192 (242)
T d1cyda_ 141 --------------------------FPNLITYSSTKGAMTMLTKAMAMEL-GPHKIRVNSVNPTVVLTDMGKKVSAD-P 192 (242)
T ss_dssp --------------------------CTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBTTHHHHHHTCC-H
T ss_pred --------------------------CCccccccchHHHHHHHHHHHHHHh-CccCeecccCCCCCccCHHHHhhcCC-H
Confidence 4678899999999999999999999 77899999999999999865321111 1
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
..........+..++.+|||+|+.+++|
T Consensus 193 ~~~~~~~~~~pl~R~~~peeva~~v~fL 220 (242)
T d1cyda_ 193 EFARKLKERHPLRKFAEVEDVVNSILFL 220 (242)
T ss_dssp HHHHHHHHHSTTSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 1111222233346788999999988764
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-41 Score=307.69 Aligned_cols=227 Identities=17% Similarity=0.219 Sum_probs=190.2
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhcc-----CCCceEEEEccCCCHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-----AKENYTIMHLDLASLDSVRQFVD 156 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~-----~~~~v~~~~~Dvs~~~~v~~~~~ 156 (350)
..|+||++|||||++|||+++|+.|+++|+ +|++++|+.+++++..+++.. .+.++.+++||++|+++++++++
T Consensus 8 g~L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~ 86 (297)
T d1yxma1 8 GLLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVK 86 (297)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHH
Confidence 358999999999999999999999999996 899999999888888777642 35689999999999999999999
Q ss_pred HHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCC
Q 018819 157 TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236 (350)
Q Consensus 157 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~ 236 (350)
++.+.+|+||+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ .|+||++||.. ..
T Consensus 87 ~~~~~~G~iDiLVnnAg~~~~-~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~--~g~Ii~~ss~~-~~----- 157 (297)
T d1yxma1 87 STLDTFGKINFLVNNGGGQFL-SPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEH--GGSIVNIIVPT-KA----- 157 (297)
T ss_dssp HHHHHHSCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHH--CEEEEEECCCC-TT-----
T ss_pred HHHHHhCCeEEEEeecccccc-CchhhhhhhhhhhhhcccccchhhHHHHHHHhhcccc--ccccccccccc-cc-----
Confidence 999999999999999998654 7888999999999999999999999999999998876 57888886643 22
Q ss_pred CCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccccc
Q 018819 237 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 316 (350)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~ 316 (350)
..++...|++||+|+.+|+++++.|+ .++|||||+|+||+|+|++....
T Consensus 158 ------------------------------~~~~~~~Y~asKaal~~ltk~lA~el-~~~gIrVN~I~PG~i~T~~~~~~ 206 (297)
T d1yxma1 158 ------------------------------GFPLAVHSGAARAGVYNLTKSLALEW-ACSGIRINCVAPGVIYSQTAVEN 206 (297)
T ss_dssp ------------------------------CCTTCHHHHHHHHHHHHHHHHHHHHT-GGGTEEEEEEEECSBCCTGGGTT
T ss_pred ------------------------------cccccccchhHHHHHHHHHHHHHHHh-cccCceEEEeeeCcCcCcchhhh
Confidence 14678899999999999999999999 67899999999999999986443
Q ss_pred chhhHHh-hhhhhHHhhhcCccchhhhhhhcccc
Q 018819 317 HIPLFRL-LFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 317 ~~~~~~~-~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
....... ........+..++.+|||+|+.+++|
T Consensus 207 ~~~~~~~~~~~~~~~~plgR~g~pedvA~~v~fL 240 (297)
T d1yxma1 207 YGSWGQSFFEGSFQKIPAKRIGVPEEVSSVVCFL 240 (297)
T ss_dssp SGGGGGGGGTTGGGGSTTSSCBCTHHHHHHHHHH
T ss_pred ccccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 3222111 11122223346788999999988764
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=6.1e-42 Score=307.42 Aligned_cols=228 Identities=18% Similarity=0.183 Sum_probs=187.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCC---CceEEEEccCCCHHHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK---ENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~---~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
.|+||++|||||++|||+++|+.|+++|+ +|++++|+.++++++.+++...+ .++.++.||++|+++++++++++.
T Consensus 1 rL~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 79 (274)
T d1xhla_ 1 RFSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTL 79 (274)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHH
Confidence 36899999999999999999999999996 99999999999999888886543 468999999999999999999999
Q ss_pred HcCCCCcEEEEccccCCCC-CCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCC
Q 018819 160 RSGRPLDVLVCNAAVYLPT-AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 238 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~~-~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~ 238 (350)
+++|+||++|||||..... ..+.+.+.|+|++++++|+.++++++|+++|+|.+++ +|+|+++||.++..+
T Consensus 80 ~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~g~ii~~ss~~~~~~------ 151 (274)
T d1xhla_ 80 AKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK--GEIVNVSSIVAGPQA------ 151 (274)
T ss_dssp HHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEECCGGGSSSC------
T ss_pred HHcCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccc--cccccchhhhhcccc------
Confidence 9999999999999975432 3445678899999999999999999999999998876 578888888777643
Q ss_pred CCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch
Q 018819 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (350)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~ 318 (350)
.+++..|++||+|+.+|+++++.|+ .++|||||+|+||+|+|++......
T Consensus 152 -----------------------------~~~~~~Y~asKaal~~ltk~lA~el-a~~gIrVN~I~PG~i~T~~~~~~~~ 201 (274)
T d1xhla_ 152 -----------------------------HSGYPYYACAKAALDQYTRCTAIDL-IQHGVRVNSVSPGAVATGFMGAMGL 201 (274)
T ss_dssp -----------------------------CTTSHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBCSSHHHHTTC
T ss_pred -----------------------------CCCCceehhhhhHHHHHHHHHHHHH-hHhCCceeeeccCCCcCchhhhhcc
Confidence 3678899999999999999999999 6789999999999999997533211
Q ss_pred hh-HHhhhhhh-----HHhhhcCccchhhhhhhcccc
Q 018819 319 PL-FRLLFPPF-----QKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ~~-~~~~~~~~-----~~~~~~~~~s~~~~a~~i~~~ 349 (350)
+. .......+ ...+..++.+|||+|+.+++|
T Consensus 202 ~~~~~~~~~~~~~~~~~~iPlgR~g~pediA~~v~fL 238 (274)
T d1xhla_ 202 PETASDKLYSFIGSRKECIPVGHCGKPEEIANIIVFL 238 (274)
T ss_dssp CHHHHHHHHHHHHHCTTTCTTSSCBCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHH
Confidence 10 00000111 112345677999999988764
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=100.00 E-value=6.7e-42 Score=305.05 Aligned_cols=234 Identities=17% Similarity=0.213 Sum_probs=190.6
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHh-ccCCCceEEEEccCCCHHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA-GMAKENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l-~~~~~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
.++++||++|||||++|||+++|+.|+++|+ +|++++|+.+++++..+++ +..+.++.+++||++|+++++++++++.
T Consensus 4 ~m~l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (260)
T d1h5qa_ 4 TISFVNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQID 82 (260)
T ss_dssp EECCTTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cccCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHH
Confidence 3578999999999999999999999999996 9999999988887777666 3447789999999999999999999999
Q ss_pred HcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCC
Q 018819 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (350)
+++|++|+||||||+... .++.+++.++|++++++|+.|++++++++.|+|.++.. +|.|++++|..........
T Consensus 83 ~~~g~iDilVnnAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~-~g~i~~~~s~~~~~~~~~~--- 157 (260)
T d1h5qa_ 83 ADLGPISGLIANAGVSVV-KPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQ-KGSIVVTSSMSSQIINQSS--- 157 (260)
T ss_dssp HHSCSEEEEEECCCCCCC-SCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEECCGGGTSCCEEE---
T ss_pred HHhCCCcEeccccccccc-CCHHHhccccccccccccccchhhhhhhhccccccccc-ceEEEEeeccccccccccc---
Confidence 999999999999998654 78889999999999999999999999999999865442 4688888887665422000
Q ss_pred CCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchh
Q 018819 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 319 (350)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~ 319 (350)
..+.++...|++||+|+.++++.++.|+ .++|||||+|+||+|+|++.......
T Consensus 158 -------------------------~~~~~~~~~Y~asKaal~~lt~~lA~el-~~~gIrvN~I~PG~i~T~~~~~~~~~ 211 (260)
T d1h5qa_ 158 -------------------------LNGSLTQVFYNSSKAACSNLVKGLAAEW-ASAGIRVNALSPGYVNTDQTAHMDKK 211 (260)
T ss_dssp -------------------------TTEECSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCGGGGGSCHH
T ss_pred -------------------------cccCccccchhhhhhhHHHHHHHHHHHh-chhCeEEeecCCCcccCcchhccCHH
Confidence 0112567899999999999999999999 67899999999999999976432111
Q ss_pred hHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.........+..++.+|||+|+.+++|
T Consensus 212 ---~~~~~~~~~pl~R~g~pedvA~~v~fL 238 (260)
T d1h5qa_ 212 ---IRDHQASNIPLNRFAQPEEMTGQAILL 238 (260)
T ss_dssp ---HHHHHHHTCTTSSCBCGGGGHHHHHHH
T ss_pred ---HHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 111122223346778999999988764
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-41 Score=298.79 Aligned_cols=220 Identities=18% Similarity=0.184 Sum_probs=182.1
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+.|+||++|||||++|||+++|+.|+++|+ +|++++|+.++++++.+++. .+..+.+|++|++++++++ ++
T Consensus 3 ~~L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~~----~~~~~~~Dv~d~~~v~~~~----~~ 73 (244)
T d1pr9a_ 3 LFLAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECP----GIEPVCVDLGDWEATERAL----GS 73 (244)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHST----TCEEEECCTTCHHHHHHHH----TT
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcC----CCeEEEEeCCCHHHHHHHH----HH
Confidence 368999999999999999999999999996 99999999999888887764 4778999999999987765 45
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
+|+||+||||||+... .++.+++.++|++++++|+.++++++++++|.|.++.. .|+||++||.++..+
T Consensus 74 ~g~iDilVnnAg~~~~-~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~-~g~Ii~isS~~~~~~--------- 142 (244)
T d1pr9a_ 74 VGPVDLLVNNAAVALL-QPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGV-PGAIVNVSSQCSQRA--------- 142 (244)
T ss_dssp CCCCCEEEECCCCCCC-BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEECCGGGTSC---------
T ss_pred hCCceEEEeccccccc-cchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCC-cceEeeccccccccc---------
Confidence 7999999999999654 78889999999999999999999999999997654321 589999999998753
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhH
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.++...|++||+|+.+|+++++.|+ .++|||||+|+||+|+|++........
T Consensus 143 --------------------------~~~~~~Y~asKaal~~lt~~lA~el-~~~gIrvN~I~PG~v~T~~~~~~~~~~- 194 (244)
T d1pr9a_ 143 --------------------------VTNHSVYCSTKGALDMLTKVMALEL-GPHKIRVNAVNPTVVMTSMGQATWSDP- 194 (244)
T ss_dssp --------------------------CTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCSHHHHTTSCSH-
T ss_pred --------------------------ccchhhhhhhHHHHHHHHHHHHHHh-CCCcEEEEEEeeCcCcChHHhhhccCh-
Confidence 4678899999999999999999999 677999999999999998753221111
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
........+.+..++.+|||+|+.+++|
T Consensus 195 ~~~~~~~~~~pl~R~~~peevA~~v~fL 222 (244)
T d1pr9a_ 195 HKAKTMLNRIPLGKFAEVEHVVNAILFL 222 (244)
T ss_dssp HHHHHHHTTCTTCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 1111122223346678999999988764
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.5e-41 Score=297.52 Aligned_cols=220 Identities=17% Similarity=0.162 Sum_probs=181.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccC--CCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~--~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
++||++|||||++|||+++|+.|+++|+ +|++++|+.+++++..+++... +.++.+++||++|+++++++++++.++
T Consensus 1 i~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (254)
T d2gdza1 1 VNGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH 79 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence 3689999999999999999999999996 9999999999999888887543 567999999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCC-CCCeEEEEeccCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY-PSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~-~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
+|+||+||||||+... ++|++++++|+.+++++++.++|+|.+++. .+|+||++||.++..+
T Consensus 80 ~G~iDilVnnAg~~~~---------~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~~-------- 142 (254)
T d2gdza1 80 FGRLDILVNNAGVNNE---------KNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMP-------- 142 (254)
T ss_dssp HSCCCEEEECCCCCCS---------SSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSC--------
T ss_pred cCCcCeeccccccccc---------ccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhccC--------
Confidence 9999999999998532 458999999999999999999999987643 2478999999998754
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHH--HHHhhcCCCCcEEEEeeCCcccCCcccccch
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQE--FHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~--la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~ 318 (350)
.++..+|++||+|+.+|+++ ++.|+ .++|||||+|+||+|+|+++..-..
T Consensus 143 ---------------------------~~~~~~Y~asKaal~~ltrs~ala~e~-~~~gIrVN~I~PG~i~T~~~~~~~~ 194 (254)
T d2gdza1 143 ---------------------------VAQQPVYCASKHGIVGFTRSAALAANL-MNSGVRLNAICPGFVNTAILESIEK 194 (254)
T ss_dssp ---------------------------CTTCHHHHHHHHHHHHHHHHHHHHHHH-HTCCEEEEEEEESCBSSHHHHGGGC
T ss_pred ---------------------------CCCccchHHHHHHHHHHHHHHHHHHHh-cCCCEEEEEEEcCCCCChhhhhccc
Confidence 46788999999999999997 68888 6789999999999999987532111
Q ss_pred h--hHH---hhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 319 P--LFR---LLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ~--~~~---~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
. ... ............++.+|||+|+.+++|
T Consensus 195 ~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~fL 230 (254)
T d2gdza1 195 EENMGQYIEYKDHIKDMIKYYGILDPPLIANGLITL 230 (254)
T ss_dssp HHHHGGGGGGHHHHHHHHHHHCCBCHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 0 000 001111122346788999999998764
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=100.00 E-value=1.2e-40 Score=299.19 Aligned_cols=224 Identities=17% Similarity=0.118 Sum_probs=182.2
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
|+|+||++|||||++|||+++|+.|+++|+ +|++++|+.++++++.+++ +.++..+.||++++++++++++++.++
T Consensus 1 M~L~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~---~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 76 (276)
T d1bdba_ 1 MKLKGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKSAERLAELETDH---GDNVLGIVGDVRSLEDQKQAASRCVAR 76 (276)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc---CCCeeEEecccccHHHHHHHHHHHHHH
Confidence 468999999999999999999999999996 9999999998888777765 357899999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCC----CCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAK----EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~----~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~ 237 (350)
+|++|++|||||+...... ..+.+.++|++++++|+.|+++++|+++|.|++++ |+||+++|.++..+
T Consensus 77 ~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~---g~iI~i~S~~~~~~----- 148 (276)
T d1bdba_ 77 FGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR---GNVIFTISNAGFYP----- 148 (276)
T ss_dssp HSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCGGGTST-----
T ss_pred hCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC---CCceeeeechhccC-----
Confidence 9999999999998644222 24455678999999999999999999999998764 79999999988753
Q ss_pred CCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccc
Q 018819 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317 (350)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~ 317 (350)
.++...|++||+|+.+|+++++.|+ .+ +||||+|+||+|+|++.....
T Consensus 149 ------------------------------~~~~~~Y~asKaal~~ltr~lA~el-a~-~IrVN~I~PG~i~T~~~~~~~ 196 (276)
T d1bdba_ 149 ------------------------------NGGGPLYTAAKHAIVGLVRELAFEL-AP-YVRVNGVGSGGINSDLRGPSS 196 (276)
T ss_dssp ------------------------------TSSCHHHHHHHHHHHHHHHHHHHHH-TT-TCEEEEEEECCCCSCCCCCGG
T ss_pred ------------------------------CCCCchHHHHHHHHHHHHHHHHHHh-hc-ceEEcccCCCCEecCcCCccc
Confidence 3678899999999999999999999 55 599999999999999763322
Q ss_pred hhhHHh--hhhhhHH-----hhhcCccchhhhhhhcccc
Q 018819 318 IPLFRL--LFPPFQK-----YITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 318 ~~~~~~--~~~~~~~-----~~~~~~~s~~~~a~~i~~~ 349 (350)
...... ..+.+.. .+..++.+|||+|+.+++|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~PlgR~g~peeva~~v~fL 235 (276)
T d1bdba_ 197 LGMGSKAISTVPLADMLKSVLPIGRMPEVEEYTGAYVFF 235 (276)
T ss_dssp GC---------CHHHHHTTTCTTSSCCCGGGGSHHHHHH
T ss_pred hhhhhhccCcHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 211110 0111111 1235677899999887654
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=100.00 E-value=5.9e-41 Score=298.78 Aligned_cols=226 Identities=17% Similarity=0.182 Sum_probs=188.5
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEE-ecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMA-CRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~-~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
.|+||++|||||++|||+++|+.|+++|+ +|+++ .|+.+..+++.++++..+.++.+++||++|+++++++++++.++
T Consensus 3 ~L~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~ 81 (259)
T d1ja9a_ 3 PLAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSH 81 (259)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999999999996 67765 56677788888888888889999999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
+|+||++|||||.... .++.+.+.++|++.+++|+.++++++|.++|+|+++ |++++++|..+...
T Consensus 82 ~g~idilinnag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~----g~~iii~s~~~~~~--------- 147 (259)
T d1ja9a_ 82 FGGLDFVMSNSGMEVW-CDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG----GRIILTSSIAAVMT--------- 147 (259)
T ss_dssp HSCEEEEECCCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE----EEEEEECCGGGTCC---------
T ss_pred cCCCcEEEeccccccc-cccccchHHHHHHHHhhccceeeeehhhhhhhhhcC----Cccccccccccccc---------
Confidence 9999999999998644 788899999999999999999999999999999764 58888888766542
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchh--
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP-- 319 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~-- 319 (350)
+.+++..|++||+|+.++++.+++|+ +++|||||+|+||+|+|+++......
T Consensus 148 -------------------------~~~~~~~Y~asK~al~~l~r~lA~e~-~~~gIrvN~I~PG~i~T~~~~~~~~~~~ 201 (259)
T d1ja9a_ 148 -------------------------GIPNHALYAGSKAAVEGFCRAFAVDC-GAKGVTVNCIAPGGVKTDMFDENSWHYA 201 (259)
T ss_dssp -------------------------SCCSCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBSSHHHHHHGGGTS
T ss_pred -------------------------CCCCchhHHHHHHHHHHHHHHHHHHH-hhcCeEEeccCcCCccChhhhhhhhhhh
Confidence 24678899999999999999999999 67799999999999999875322110
Q ss_pred --------hHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 320 --------LFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 320 --------~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
...............++.+|+|+|+.+++|
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~pl~R~g~p~eVa~~v~fL 239 (259)
T d1ja9a_ 202 PGGYKGMPQEKIDEGLANMNPLKRIGYPADIGRAVSAL 239 (259)
T ss_dssp TTCCTTCCHHHHHHHHHHTSTTSSCBCHHHHHHHHHHH
T ss_pred hhhcccCCHHHHHHHHHhCCCCCCCcCHHHHHHHHHHH
Confidence 011111111222346788999999988765
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=100.00 E-value=4.1e-41 Score=298.48 Aligned_cols=217 Identities=16% Similarity=0.154 Sum_probs=179.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
|+|||||++|||+++|+.|+++|+ +|++.+|+.+..+++..... .+.+||++|.++++++++++.+++|+||+
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga-~V~i~~r~~~~~~~~~~~~~------~~~~~dv~~~~~~~~~~~~~~~~~G~iDi 74 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDELEAFAE------TYPQLKPMSEQEPAELIEAVTSAYGQVDV 74 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHH------HCTTSEECCCCSHHHHHHHHHHHHSCCCE
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhhhC------cEEEeccCCHHHHHHHHHHHHHHcCCCCE
Confidence 899999999999999999999996 99999998877766544332 23469999999999999999999999999
Q ss_pred EEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcccc
Q 018819 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (350)
Q Consensus 168 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (350)
||||||+.....++.+++.++|++++++|+.++++++|+++|+|++++ .|+||++||.++..+
T Consensus 75 LVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~--~G~IV~isS~~~~~~--------------- 137 (252)
T d1zmta1 75 LVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK--SGHIIFITSATPFGP--------------- 137 (252)
T ss_dssp EEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCSTTTSC---------------
T ss_pred EEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccc--cceeecccccccccc---------------
Confidence 999999865557888999999999999999999999999999998876 589999999998753
Q ss_pred ccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhhhh-
Q 018819 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFP- 326 (350)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~- 326 (350)
.++...|++||+|+.+|+++++.|+ .++|||||+|+||+|+|++.............+
T Consensus 138 --------------------~~~~~~Y~asKaal~~lt~~lA~el-a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~e 196 (252)
T d1zmta1 138 --------------------WKELSTYTSARAGACTLANALSKEL-GEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPE 196 (252)
T ss_dssp --------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHH
T ss_pred --------------------cccccccccccccHHHHHHHHHHHh-cccCcEEEEEecCCCcCcchhhhhhcccccCCHH
Confidence 4677899999999999999999999 678999999999999998753221111000111
Q ss_pred ----hhHHhhhcCccchhhhhhhcccc
Q 018819 327 ----PFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 327 ----~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
........++.+|||+|+.+++|
T Consensus 197 ~~~~~~~~~pl~R~g~pedvA~~v~fL 223 (252)
T d1zmta1 197 HVAHVKKVTALQRLGTQKELGELVAFL 223 (252)
T ss_dssp HHHHHHHHSSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 11122246678999999988764
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=1e-40 Score=302.88 Aligned_cols=213 Identities=18% Similarity=0.178 Sum_probs=179.8
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC---------hhHHHHHHHHhccCCCceEEEEccCCCHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD---------FLKAERAAKSAGMAKENYTIMHLDLASLDSV 151 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~---------~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v 151 (350)
+|+|+||++|||||++|||+++|+.|+++|+ +|++.+|+ .+.+++..+++... ...+.+|++|.+++
T Consensus 2 Pm~l~gKvalITGas~GIG~aiA~~la~~Ga-~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~~~~~~~ 77 (302)
T d1gz6a_ 2 PLRFDGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLGGDFKGVGKGSSAADKVVEEIRRR---GGKAVANYDSVEAG 77 (302)
T ss_dssp CCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSCBCCSHHHHHHHHHHHHT---TCEEEEECCCGGGH
T ss_pred CcCcCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchhhhhhhhHHHHHHHHHHHhhc---ccccccccchHHHH
Confidence 3578999999999999999999999999996 88888654 45566666666543 34567899999999
Q ss_pred HHHHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCC
Q 018819 152 RQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNT 231 (350)
Q Consensus 152 ~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~ 231 (350)
+++++++.+++|+||+||||||+..+ .++.+++.++|++++++|+.|+++++|+++|+|++++ .|+||++||+++..
T Consensus 78 ~~~v~~~~~~~G~iDiLVnNAGi~~~-~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~--~G~IV~isS~~~~~ 154 (302)
T d1gz6a_ 78 EKLVKTALDTFGRIDVVVNNAGILRD-RSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN--YGRIIMTASASGIY 154 (302)
T ss_dssp HHHHHHHHHHTSCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHHH
T ss_pred HHHHHHHHHHcCCCCEEEECCccCCC-CChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCC--CcEEEEeCChhhcC
Confidence 99999999999999999999999765 7899999999999999999999999999999998876 58999999999876
Q ss_pred CCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCC
Q 018819 232 NTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (350)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~ 311 (350)
+ .+++..|++||+|+.+|+++++.|+ .++||+||+|+||++.|+
T Consensus 155 ~-----------------------------------~~~~~~Y~asKaal~~lt~~la~E~-~~~gIrVN~I~PG~~~t~ 198 (302)
T d1gz6a_ 155 G-----------------------------------NFGQANYSAAKLGLLGLANTLVIEG-RKNNIHCNTIAPNAGSRM 198 (302)
T ss_dssp C-----------------------------------CTTCHHHHHHHHHHHHHHHHHHHHT-GGGTEEEEEEEEECCSTT
T ss_pred C-----------------------------------CCCcHHHHHHHHHHHHHHHHHHHHH-hccCCceeeeCCCCCCcc
Confidence 4 3678999999999999999999999 678999999999999886
Q ss_pred cccccchhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 312 GLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
+......++.+ ..+|||+|+.+++|
T Consensus 199 ~~~~~~~~~~~-------------~~~PedvA~~v~fL 223 (302)
T d1gz6a_ 199 TETVMPEDLVE-------------ALKPEYVAPLVLWL 223 (302)
T ss_dssp TGGGSCHHHHH-------------HSCGGGTHHHHHHH
T ss_pred hhhcCcHhhHh-------------cCCHHHHHHHHHHH
Confidence 43222222222 34688888877654
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=100.00 E-value=5.9e-40 Score=288.90 Aligned_cols=218 Identities=19% Similarity=0.183 Sum_probs=179.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.|+||++|||||++|||+++|+.|+++|+ +|++++|+.+++++..+++ +.++.+++||++++++++++++++.+++
T Consensus 2 ~l~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dls~~~~i~~~~~~i~~~~ 77 (241)
T d2a4ka1 2 RLSGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAAL---EAEAIAVVADVSDPKAVEAVFAEALEEF 77 (241)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTC---CSSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc---CCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 47999999999999999999999999996 9999999988877666655 4688999999999999999999999999
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
|++|++|||||.... .++.+.+.++|++++++|+.++++++|++.|+|.++ +.|+++||.+...
T Consensus 78 g~iDiLinnAg~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~----~~i~~~ss~a~~~----------- 141 (241)
T d2a4ka1 78 GRLHGVAHFAGVAHS-ALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEG----GSLVLTGSVAGLG----------- 141 (241)
T ss_dssp SCCCEEEEGGGGTTT-TC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTT----CEEEEECCCTTCC-----------
T ss_pred CCccEeccccccccc-cchhhhhccccccccccccccccccccccccccccc----cceeecccccccc-----------
Confidence 999999999998654 788999999999999999999999999999988764 3666666655432
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 322 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 322 (350)
.+++..|+++|+|+++|++++++|+ .++||+||+|+||+|+|++.... .+-
T Consensus 142 -------------------------~~~~~~Y~~sK~al~~lt~~lA~el-~~~gIrvN~I~PG~v~T~~~~~~-~~~-- 192 (241)
T d2a4ka1 142 -------------------------AFGLAHYAAGKLGVVGLARTLALEL-ARKGVRVNVLLPGLIQTPMTAGL-PPW-- 192 (241)
T ss_dssp -------------------------HHHHHHHHHCSSHHHHHHHHHHHHH-TTTTCEEEEEEECSBCCGGGTTS-CHH--
T ss_pred -------------------------ccCccccchhhHHHHHHHHHHHHHH-hHhCCEEeeeccCcCCCHHHHhh-hHh--
Confidence 3678899999999999999999999 78899999999999999975321 111
Q ss_pred hhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 323 LLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 323 ~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.......+.+..++.+|+|+|+.+++|
T Consensus 193 ~~~~~~~~~p~~r~~~p~dva~~v~fL 219 (241)
T d2a4ka1 193 AWEQEVGASPLGRAGRPEEVAQAALFL 219 (241)
T ss_dssp HHHHHHHTSTTCSCBCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCcCHHHHHHHHHHH
Confidence 111122233346778999999988764
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.2e-39 Score=290.29 Aligned_cols=228 Identities=19% Similarity=0.166 Sum_probs=185.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHH---cCCcEEEEEecChhHHHHHHHHhcc--CCCceEEEEccCCCHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAE---TGKWHIIMACRDFLKAERAAKSAGM--AKENYTIMHLDLASLDSVRQFVDT 157 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~---~Ga~~Vi~~~r~~~~~~~~~~~l~~--~~~~v~~~~~Dvs~~~~v~~~~~~ 157 (350)
.|+||++|||||++|||+++|+.|++ +|+ +|++++|+.++++++.+++.. .+.++.+++||++|+++++++++.
T Consensus 3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~ 81 (259)
T d1oaaa_ 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSA 81 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCC-EEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHH
Confidence 47899999999999999999999996 785 999999999999999888854 356899999999999999999999
Q ss_pred HHHc----CCCCcEEEEccccCCC--CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCC
Q 018819 158 FRRS----GRPLDVLVCNAAVYLP--TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNT 231 (350)
Q Consensus 158 ~~~~----~g~id~lv~~Ag~~~~--~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~ 231 (350)
+.+. ++.+|++|||||...+ ..++.+.+.++|++++++|+.++++++++++|+|.+++...|+||++||.++..
T Consensus 82 ~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~~~ 161 (259)
T d1oaaa_ 82 VRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ 161 (259)
T ss_dssp HHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS
T ss_pred HHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcccccccccccccC
Confidence 8773 4678999999998643 345778999999999999999999999999999988653357999999999875
Q ss_pred CCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCC
Q 018819 232 NTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (350)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~ 311 (350)
+ .+++..|++||+|+.+|+++|+.| .+||+||+|+||+|+|+
T Consensus 162 ~-----------------------------------~~~~~~Y~asKaal~~lt~~la~e---~~gIrVn~v~PG~i~T~ 203 (259)
T d1oaaa_ 162 P-----------------------------------YKGWGLYCAGKAARDMLYQVLAAE---EPSVRVLSYAPGPLDND 203 (259)
T ss_dssp C-----------------------------------CTTCHHHHHHHHHHHHHHHHHHHH---CTTEEEEEEECCSBSSH
T ss_pred C-----------------------------------CccchHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEcCCCCCH
Confidence 3 468899999999999999999998 35999999999999998
Q ss_pred cccccchhhH-HhhhhhhHH-hhhcCccchhhhhhhcccc
Q 018819 312 GLFREHIPLF-RLLFPPFQK-YITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 312 ~~~~~~~~~~-~~~~~~~~~-~~~~~~~s~~~~a~~i~~~ 349 (350)
+......... ......+.. ....++.+|+|+|+.++++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~p~evA~~i~~l 243 (259)
T d1oaaa_ 204 MQQLARETSKDPELRSKLQKLKSDGALVDCGTSAQKLLGL 243 (259)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHTTCSBCHHHHHHHHHHH
T ss_pred HHHHhhhcCCCHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 7522111000 000111111 2235678999999988753
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=100.00 E-value=2.1e-39 Score=290.75 Aligned_cols=228 Identities=19% Similarity=0.219 Sum_probs=189.2
Q ss_pred ccccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC-hhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHH
Q 018819 81 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD-FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~-~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
..+|+||++|||||++|||+++|+.|+++|+ +|++++|+ .+.++++.++++..+.++.+++||++|+++++++++++.
T Consensus 13 ~~sL~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~ 91 (272)
T d1g0oa_ 13 SASLEGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAV 91 (272)
T ss_dssp GGCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CcCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999999999999996 88887765 566778888888888899999999999999999999999
Q ss_pred HcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCC
Q 018819 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (350)
+.+|++|++|||+|.... .++.+.+.++|++++++|+.+++++++++.|+|.++ |++++++|+.+..+
T Consensus 92 ~~~g~idilV~nag~~~~-~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~----g~~i~i~s~~~~~~------- 159 (272)
T d1g0oa_ 92 KIFGKLDIVCSNSGVVSF-GHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIG----GRLILMGSITGQAK------- 159 (272)
T ss_dssp HHHSCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTT----CEEEEECCGGGTCS-------
T ss_pred HHhCCCCccccccccchh-hhhhhhhhhHHHHHhhhccceeeeeccccccccccc----cccccccccccccc-------
Confidence 999999999999998654 788899999999999999999999999999999874 59999998876542
Q ss_pred CCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccc--
Q 018819 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH-- 317 (350)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~-- 317 (350)
+.+++..|+++|+|+++|+++++.|| .++|||||+|+||+|+|++.....
T Consensus 160 ---------------------------~~~~~~~Y~asKaal~~ltk~lA~e~-~~~gIrVN~I~PG~v~T~~~~~~~~~ 211 (272)
T d1g0oa_ 160 ---------------------------AVPKHAVYSGSKGAIETFARCMAIDM-ADKKITVNVVAPGGIKTDMYHAVCRE 211 (272)
T ss_dssp ---------------------------SCSSCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBSSHHHHHHGGG
T ss_pred ---------------------------cccchhhHHHHHHHHHHHHHHHHHHh-chhCeEEEEEccCCcCChHHHHHHHh
Confidence 24577889999999999999999999 678999999999999998752211
Q ss_pred -hh------hHHhhh-hhhHHhhhcCccchhhhhhhcccc
Q 018819 318 -IP------LFRLLF-PPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 318 -~~------~~~~~~-~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.. ...... ......+..++.+|+|+|+.+++|
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~PlgR~~~peevA~~v~fL 251 (272)
T d1g0oa_ 212 YIPNGENLSNEEVDEYAAVQWSPLRRVGLPIDIARVVCFL 251 (272)
T ss_dssp GSTTCTTCCHHHHHHHHHHHSCTTCSCBCHHHHHHHHHHH
T ss_pred hhhcccccchHHHHHHHHHccCCCCCCcCHHHHHHHHHHH
Confidence 00 000000 011122246788999999988765
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.2e-39 Score=292.18 Aligned_cols=223 Identities=21% Similarity=0.250 Sum_probs=176.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCc--EEEEEecCh---hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKW--HIIMACRDF---LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~--~Vi~~~r~~---~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
.|++|||||++|||+++|+.|+++|++ .|..+.|+. +++.+..+++...+.++.++.||++|+++++++++++.+
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 81 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE 81 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhccc
Confidence 468999999999999999999999973 233445553 345555666667778999999999999999999988743
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
|.+|++|||||.... ..+.+.+.++|++++++|+.|+++++++++|+|++++ .|+||++||+++..+
T Consensus 82 --g~idilvnnag~~~~-~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~--~G~Iv~isS~~g~~~-------- 148 (285)
T d1jtva_ 82 --GRVDVLVCNAGLGLL-GPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRG--SGRVLVTGSVGGLMG-------- 148 (285)
T ss_dssp --SCCSEEEECCCCCCC-SCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEEEEGGGTSC--------
T ss_pred --cchhhhhhccccccc-ccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcC--CCceEEEechhhcCC--------
Confidence 789999999998654 7888999999999999999999999999999998876 589999999999864
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch--
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-- 318 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~-- 318 (350)
.++...|++||+|+.+|+++++.|+ .++||+||+|+||+|+|+++.....
T Consensus 149 ---------------------------~~~~~~Y~asKaal~~l~~~la~El-~~~gIrVn~V~PG~v~T~~~~~~~~~~ 200 (285)
T d1jtva_ 149 ---------------------------LPFNDVYCASKFALEGLCESLAVLL-LPFGVHLSLIECGPVHTAFMEKVLGSP 200 (285)
T ss_dssp ---------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCC-------CCH
T ss_pred ---------------------------CCCchHHHHHHHHHHHHHHHHHHHh-hccCcEEEEEecCCCCChHHHHhccCH
Confidence 4678899999999999999999999 6789999999999999987632111
Q ss_pred ----------hhHHhhh--hhhHHhhhcCccchhhhhhhcccc
Q 018819 319 ----------PLFRLLF--PPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ----------~~~~~~~--~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
+..++.. .........+..+|||+|+.|+++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PeeVA~~v~~~ 243 (285)
T d1jtva_ 201 EEVLDRTDIHTFHRFYQYLAHSKQVFREAAQNPEEVAEVFLTA 243 (285)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHHHHHHHCBCHHHHHHHHHHH
T ss_pred HHHhhccchhHHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHH
Confidence 1111111 111122234567999999988753
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=100.00 E-value=2.4e-39 Score=287.04 Aligned_cols=219 Identities=17% Similarity=0.234 Sum_probs=173.6
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHh-ccCCCceEEEEccCC-CHHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA-GMAKENYTIMHLDLA-SLDSVRQFVDTFR 159 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l-~~~~~~v~~~~~Dvs-~~~~v~~~~~~~~ 159 (350)
|+|+||++|||||++|||+++|++|+++|+ +|++++|+.++.+...+.. ...+.++.++.||++ +.++++++++.+.
T Consensus 1 m~l~gK~vlITGgs~GIG~~~A~~la~~G~-~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 79 (254)
T d1sbya1 1 MDLTNKNVIFVAALGGIGLDTSRELVKRNL-KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIF 79 (254)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTCC-SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHH
Confidence 468999999999999999999999999997 6777766655544443322 234557999999998 6788999999999
Q ss_pred HcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCC-CCCeEEEEeccCCCCCCCCCCC
Q 018819 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY-PSKRLIIVGSITGNTNTLAGNV 238 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~-~~g~iV~vSS~~~~~~~~~~~~ 238 (350)
+++|+||+||||||.. +.+.|++++++|+.|+++++++++|.|.+++. ..|+||++||.++..+
T Consensus 80 ~~~g~iDilvnnAG~~---------~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~~------ 144 (254)
T d1sbya1 80 DQLKTVDILINGAGIL---------DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNA------ 144 (254)
T ss_dssp HHHSCCCEEEECCCCC---------CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSC------
T ss_pred HHcCCCCEEEeCCCCC---------CHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhccC------
Confidence 9999999999999963 34679999999999999999999999977542 3589999999998753
Q ss_pred CCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch
Q 018819 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (350)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~ 318 (350)
.+++..|++||+|+.+|+++++.|+ .++||+||+|+||+|+|++.....
T Consensus 145 -----------------------------~~~~~~Y~asKaal~~~t~~la~el-~~~gIrVn~I~PG~v~T~~~~~~~- 193 (254)
T d1sbya1 145 -----------------------------IHQVPVYSASKAAVVSFTNSLAKLA-PITGVTAYSINPGITRTPLVHTFN- 193 (254)
T ss_dssp -----------------------------CTTSHHHHHHHHHHHHHHHHHHHHH-HHHSEEEEEEEECSEESHHHHSCC-
T ss_pred -----------------------------CCCCHHHHHHHHHHHHHHHHHHhhc-cccCeEEEEEEeCCCcCccccccc-
Confidence 4688899999999999999999999 677999999999999998642211
Q ss_pred hhHHhhhhhhHHh-hhcCccchhhhhhhccc
Q 018819 319 PLFRLLFPPFQKY-ITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 319 ~~~~~~~~~~~~~-~~~~~~s~~~~a~~i~~ 348 (350)
+... ..+.+... ......+||++|+.++.
T Consensus 194 ~~~~-~~~~~~~~~~~~~~~~~e~va~~~~~ 223 (254)
T d1sbya1 194 SWLD-VEPRVAELLLSHPTQTSEQCGQNFVK 223 (254)
T ss_dssp CGGG-SCTTHHHHHTTSCCEEHHHHHHHHHH
T ss_pred cchh-HHHHHHhccccCCCCCHHHHHHHHHH
Confidence 1111 11112222 23456789999887754
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.8e-39 Score=287.54 Aligned_cols=225 Identities=13% Similarity=0.113 Sum_probs=177.8
Q ss_pred cccCCCEEEEEcCCC--chHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASS--GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 82 ~~l~~~~~lItGgs~--gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
.+|+||++|||||+| |||+++|++|+++|+ +|++++|++...++..+.. ..+.+..+++||++|+++++++++++.
T Consensus 4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~v~~~~~~~~ 81 (256)
T d1ulua_ 4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKLA-EALGGALLFRADVTQDEELDALFAGVK 81 (256)
T ss_dssp ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHH-HHTTCCEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHhh-hccCcccccccccCCHHHHHHHHHHHH
Confidence 368999999999986 999999999999996 8999999865554443333 334467889999999999999999999
Q ss_pred HcCCCCcEEEEccccCCC---CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCC
Q 018819 160 RSGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~---~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~ 236 (350)
+++|+||+||||||+... ...+.+.+.++|+..+++|+.+++.+++++.|.|.+ +|+||++||..+..+
T Consensus 82 ~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~----~G~Iv~isS~~~~~~---- 153 (256)
T d1ulua_ 82 EAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLRE----GGGIVTLTYYASEKV---- 153 (256)
T ss_dssp HHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEE----EEEEEEEECGGGTSB----
T ss_pred HhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhcc----CCEEEEEeehHhcCC----
Confidence 999999999999998532 235667889999999999999999999999998876 369999999998753
Q ss_pred CCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccccc
Q 018819 237 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 316 (350)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~ 316 (350)
.++...|++||+|+++++++++.|+ .++|||||+|+||+|+|++....
T Consensus 154 -------------------------------~~~~~~Y~asKaal~~ltr~lA~el-a~~gIrVN~I~PG~i~t~~~~~~ 201 (256)
T d1ulua_ 154 -------------------------------VPKYNVMAIAKAALEASVRYLAYEL-GPKGVRVNAISAGPVRTVAARSI 201 (256)
T ss_dssp -------------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCC--------
T ss_pred -------------------------------CCCchHHHHHHHHHHHHHHHHHHHh-cccCCEEeeeccceeeeccccch
Confidence 3678899999999999999999999 67899999999999999865332
Q ss_pred chhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 317 HIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.. ............+..++.+|||+|+.+++|
T Consensus 202 ~~-~~~~~~~~~~~~pl~R~~~pedvA~~v~fL 233 (256)
T d1ulua_ 202 PG-FTKMYDRVAQTAPLRRNITQEEVGNLGLFL 233 (256)
T ss_dssp ---CHHHHHHHHHHSTTSSCCCHHHHHHHHHHH
T ss_pred hh-hHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 11 111111122233356788999999988764
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=5.8e-39 Score=281.43 Aligned_cols=209 Identities=17% Similarity=0.192 Sum_probs=170.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
|+||++|||||++|||+++|+.|+++|+ +|++++|+.+.+++. ...++.||+++. ++.+.++++
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga-~V~~~~r~~~~l~~~---------~~~~~~~Dv~~~------~~~~~~~~g 65 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEELLKRS---------GHRYVVCDLRKD------LDLLFEKVK 65 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHT---------CSEEEECCTTTC------HHHHHHHSC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHhc---------CCcEEEcchHHH------HHHHHHHhC
Confidence 5899999999999999999999999996 999999997654432 235678999863 344556779
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCC
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (350)
+||+||||||+.. ..++.+++.++|++++++|+.++++++|+++|.|++++ .|+||+++|..+..+
T Consensus 66 ~iD~lVnnAG~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~--~G~ii~i~S~~~~~~----------- 131 (234)
T d1o5ia_ 66 EVDILVLNAGGPK-AGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG--WGRIVAITSFSVISP----------- 131 (234)
T ss_dssp CCSEEEECCCCCC-CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTSC-----------
T ss_pred CCcEEEecccccC-CcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccc--ccccccccccccccc-----------
Confidence 9999999999864 47888999999999999999999999999999998876 589999999887643
Q ss_pred ccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHh
Q 018819 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL 323 (350)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~ 323 (350)
.++...|++||+|+.+|+++++.|+ .++|||||+|+||+++|++......+...
T Consensus 132 ------------------------~~~~~~Y~asKaal~~ltk~lA~el-a~~gIrVN~I~PG~v~T~~~~~~~~~~~~- 185 (234)
T d1o5ia_ 132 ------------------------IENLYTSNSARMALTGFLKTLSFEV-APYGITVNCVAPGWTETERVKELLSEEKK- 185 (234)
T ss_dssp ------------------------CTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCTTHHHHSCHHHH-
T ss_pred ------------------------ccccccchhHHHHHHHHHHHHHHHh-cccCeEEeecccCccchhhhhhhcCHHHH-
Confidence 4678899999999999999999999 67899999999999999976332211111
Q ss_pred hhhhhHHhhhcCccchhhhhhhcccc
Q 018819 324 LFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 324 ~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.....+.+..++.+|||+|+.+++|
T Consensus 186 -~~~~~~~pl~R~~~pediA~~v~fL 210 (234)
T d1o5ia_ 186 -KQVESQIPMRRMAKPEEIASVVAFL 210 (234)
T ss_dssp -HHHHTTSTTSSCBCHHHHHHHHHHH
T ss_pred -HHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 1111223346678999999988764
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.6e-39 Score=288.05 Aligned_cols=220 Identities=22% Similarity=0.252 Sum_probs=169.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHc-CCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 87 GSVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~-Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
+++|||||++|||+++|+.|+++ | .+|++++|+.++++++.++++..+.++.+++||++|.++++++++++.+++|+|
T Consensus 4 rVAlVTGas~GIG~a~A~~la~~~g-~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g~i 82 (275)
T d1wmaa1 4 HVALVTGGNKGIGLAIVRDLCRLFS-GDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGL 82 (275)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHHSS-SEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSSE
T ss_pred eEEEECCCCCHHHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcCCc
Confidence 47799999999999999999986 7 599999999999999999998888899999999999999999999999999999
Q ss_pred cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcc
Q 018819 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (350)
|+||||||+... ..+.+.+.++|+.+|++|++|++++++.++|+|++ .|+||++||+.+..+. ++..++.....
T Consensus 83 DiLVnNAGi~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~----~g~ivnisS~~~~~~~-~~~~~y~~~k~ 156 (275)
T d1wmaa1 83 DVLVNNAGIAFK-VADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKP----QGRVVNVSSIMSVRAL-KSCSPELQQKF 156 (275)
T ss_dssp EEEEECCCCCCC-TTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEE----EEEEEEECCHHHHHHH-HTSCHHHHHHH
T ss_pred EEEEEcCCcCCC-CCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCcccccccceeccc-cccchhhhhhh
Confidence 999999999754 56677788999999999999999999999999976 3699999999876432 11111100000
Q ss_pred cccccccc----C---CCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcC---CCCcEEEEeeCCcccCCcc
Q 018819 246 DLRGFAGG----L---NGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE---ETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 246 ~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~---~~gi~v~~v~PG~v~t~~~ 313 (350)
........ . ...+........+..+...|++||+++.++++.+++++.. ..||+||+|+||+|+|++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~vn~v~PG~v~T~m~ 234 (275)
T d1wmaa1 157 RSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMA 234 (275)
T ss_dssp HCSSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTT
T ss_pred cccccchhhhccccccchhcccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccCCcc
Confidence 00000000 0 0000000000011234567999999999999999998842 3599999999999999875
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-37 Score=278.30 Aligned_cols=191 Identities=21% Similarity=0.257 Sum_probs=172.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhc-cCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG-MAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~-~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
.|+||++|||||++|||+++|+.|+++|+ +|++++|+.++++++.+++. ..+..+..+.+|+++.+++..+++.+.+.
T Consensus 11 ~L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 89 (269)
T d1xu9a_ 11 MLQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKL 89 (269)
T ss_dssp GGTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHH
Confidence 48999999999999999999999999995 99999999999988877754 45667889999999999999999999999
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
++.+|++|||||.... ..+.+.+.++|++++++|+.|++++++.++|+|+++ +|+||++||.++..+
T Consensus 90 ~g~~~~li~nag~~~~-~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~---~G~ii~isS~~~~~~--------- 156 (269)
T d1xu9a_ 90 MGGLDMLILNHITNTS-LNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS---NGSIVVVSSLAGKVA--------- 156 (269)
T ss_dssp HTSCSEEEECCCCCCC-CCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH---TCEEEEEEEGGGTSC---------
T ss_pred hCCccccccccccccc-cccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhc---CCcceEeccchhcCC---------
Confidence 9999999999998654 677788999999999999999999999999999765 389999999998764
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhc-CCCCcEEEEeeCCcccCCcc
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFH-EETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~-~~~gi~v~~v~PG~v~t~~~ 313 (350)
.++...|++||+|+.+|+++|+.|+. ...||+||+|+||+|+|++.
T Consensus 157 --------------------------~p~~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~PG~v~T~~~ 203 (269)
T d1xu9a_ 157 --------------------------YPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETA 203 (269)
T ss_dssp --------------------------CTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHHH
T ss_pred --------------------------CCCchHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCcCCCcHH
Confidence 47889999999999999999999984 24689999999999999865
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.4e-38 Score=278.27 Aligned_cols=219 Identities=19% Similarity=0.221 Sum_probs=175.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.|+||++|||||++|||+++|+.|+++|+ +|++++|+++++++..+. ..+....+|+.+.+.++.+. +.+
T Consensus 3 ~l~gK~alITGas~GIG~aia~~la~~G~-~Vi~~~r~~~~l~~~~~~-----~~~~~~~~d~~~~~~~~~~~----~~~ 72 (245)
T d2ag5a1 3 RLDGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELEKY-----PGIQTRVLDVTKKKQIDQFA----NEV 72 (245)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGGGGS-----TTEEEEECCTTCHHHHHHHH----HHC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc-----cCCceeeeeccccccccccc----ccc
Confidence 48999999999999999999999999995 999999998766554332 34778889999877666554 456
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|+||||||.... .++.+++.++|++.+++|+.+++++++++.|.|.+++ .|+||++||+.+...
T Consensus 73 ~~id~lVn~ag~~~~-~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~--~g~Ii~isS~~~~~~---------- 139 (245)
T d2ag5a1 73 ERLDVLFNVAGFVHH-GTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQK--SGNIINMSSVASSVK---------- 139 (245)
T ss_dssp SCCSEEEECCCCCCC-BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCSBTTTB----------
T ss_pred ccceeEEecccccCC-CChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCC--CceeeeeechhhccC----------
Confidence 899999999999755 7788999999999999999999999999999998876 589999999877531
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch--h-
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI--P- 319 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~--~- 319 (350)
+++++..|+++|+|+++++++++.|+ +++|||||+|+||+|+||+...... .
T Consensus 140 ------------------------~~~~~~~Y~~sKaal~~l~r~lA~e~-~~~gIrvN~I~PG~i~T~~~~~~~~~~~~ 194 (245)
T d2ag5a1 140 ------------------------GVVNRCVYSTTKAAVIGLTKSVAADF-IQQGIRCNCVCPGTVDTPSLQERIQARGN 194 (245)
T ss_dssp ------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESCEECHHHHHHHHHSSS
T ss_pred ------------------------CccchhHHHHHHHHHHHHHHHHHHHh-hhhCcEEEEEeeceeechhhHhhhhhhhh
Confidence 14677899999999999999999999 6789999999999999987532111 0
Q ss_pred hHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 320 LFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
...............++.+|||+|+.+.+|
T Consensus 195 ~~~~~~~~~~~~pl~R~~~pedva~~v~fL 224 (245)
T d2ag5a1 195 PEEARNDFLKRQKTGRFATAEEIAMLCVYL 224 (245)
T ss_dssp HHHHHHHHHHTCTTSSCEEHHHHHHHHHHH
T ss_pred hHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 011111112223346688999999988764
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=100.00 E-value=1.7e-37 Score=281.43 Aligned_cols=229 Identities=15% Similarity=0.175 Sum_probs=186.0
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhc-cCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG-MAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~-~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
.+|+||++|||||++|||+++|+.|+++|+ +|++++|+.+++++..+++. ..+.++.++.||++|+++++++++.+.+
T Consensus 21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~ 99 (294)
T d1w6ua_ 21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIK 99 (294)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhh
Confidence 478999999999999999999999999996 99999999988888777664 3467889999999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
.++++|++|||||.... ..+.+.+.++|+..+.+|+.+.+.+.+...+.+..... .+.+++++|..+..+
T Consensus 100 ~~g~iDilvnnAg~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~~i~~~ss~~~~~~-------- 169 (294)
T d1w6ua_ 100 VAGHPNIVINNAAGNFI-SPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQK-GAAFLSITTIYAETG-------- 169 (294)
T ss_dssp HTCSCSEEEECCCCCCC-SCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CEEEEEECCTHHHHC--------
T ss_pred hccccchhhhhhhhccc-cccccchhhhhhhheeeecccchhhhhhhhcccccccc-cccccccccchhhhc--------
Confidence 99999999999998654 67788899999999999999999999988877665442 467888888776643
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhh
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 320 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~ 320 (350)
.++..+|++||+|+.+|++.++.|+ .++|||||+|+||+|+|++......+.
T Consensus 170 ---------------------------~~~~~~YsasKaal~~ltk~lA~el-a~~gIrVN~I~PG~i~T~~~~~~~~~~ 221 (294)
T d1w6ua_ 170 ---------------------------SGFVVPSASAKAGVEAMSKSLAAEW-GKYGMRFNVIQPGPIKTKGAFSRLDPT 221 (294)
T ss_dssp ---------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCC------CCTT
T ss_pred ---------------------------ccccchHHHHHHHHHHHHHHHHHHH-hHhCeEEEEEccCccccchhhhccCCc
Confidence 3577899999999999999999999 678999999999999999764322222
Q ss_pred HHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 321 FRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 321 ~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
...........+..++.+|||+|+.+++|
T Consensus 222 ~~~~~~~~~~~pl~R~~~pediA~~v~fL 250 (294)
T d1w6ua_ 222 GTFEKEMIGRIPCGRLGTVEELANLAAFL 250 (294)
T ss_dssp SHHHHHHHTTCTTSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCCCCHHHHHHHHHHH
Confidence 12222222233346788999999988764
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=7.9e-38 Score=277.11 Aligned_cols=197 Identities=23% Similarity=0.287 Sum_probs=160.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC-cEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga-~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
+.|++|||||++|||+++|++|+++|+ .+|++++|+.++++++.+ ..+.++.+++||++|.++++++++++.+.++
T Consensus 2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~---~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~ 78 (250)
T d1yo6a1 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKS---IKDSRVHVLPLTVTCDKSLDTFVSKVGEIVG 78 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHT---CCCTTEEEEECCTTCHHHHHHHHHHHHHHHG
T ss_pred cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHH---hhCCceEEEEEecCCHHHHHHHHHHHHHHhC
Confidence 568999999999999999999999996 378999999887766543 2356799999999999999999999988754
Q ss_pred --CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCC---------CCCeEEEEeccCCCCC
Q 018819 164 --PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY---------PSKRLIIVGSITGNTN 232 (350)
Q Consensus 164 --~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~---------~~g~iV~vSS~~~~~~ 232 (350)
+||+||||||+..+..++.+.+.++|++++++|+.|++++++.++|+|+++.. ..+++++++|..+...
T Consensus 79 ~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~ 158 (250)
T d1yo6a1 79 SDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSIT 158 (250)
T ss_dssp GGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCST
T ss_pred CCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceecccccccccccccc
Confidence 49999999998766567788999999999999999999999999999976421 1368999998776643
Q ss_pred CCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 233 TLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
.... .....+..+|++||+|+.+|++.++.|+ ++.||+||+|+||+|+|+|
T Consensus 159 ~~~~----------------------------~~~~~~~~aY~aSKaal~~l~~~la~el-~~~gI~v~~i~PG~v~T~m 209 (250)
T d1yo6a1 159 DNTS----------------------------GSAQFPVLAYRMSKAAINMFGRTLAVDL-KDDNVLVVNFCPGWVQTNL 209 (250)
T ss_dssp TCCS----------------------------TTSSSCBHHHHHHHHHHHHHHHHHHHHT-GGGTCEEEEEECCCC----
T ss_pred CCcc----------------------------cccchhHHHHHHHHHHHHHHHHHHHHHh-cccCeEEEEEecCCCCCCC
Confidence 2110 0113455679999999999999999999 6779999999999999986
Q ss_pred c
Q 018819 313 L 313 (350)
Q Consensus 313 ~ 313 (350)
.
T Consensus 210 ~ 210 (250)
T d1yo6a1 210 G 210 (250)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=100.00 E-value=2.1e-37 Score=273.99 Aligned_cols=193 Identities=25% Similarity=0.334 Sum_probs=165.6
Q ss_pred CEEEEEcCCCchHHHHHHHHH---HcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH--c
Q 018819 87 GSVIITGASSGLGLATAKALA---ETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR--S 161 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la---~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~--~ 161 (350)
|++|||||++|||+++|+.|+ ++|+ +|++++|+.++++++.+..+ .+.++.+++||++|+++++++++++.+ .
T Consensus 3 KtilITGas~GIG~a~a~~l~~~a~~g~-~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~ 80 (248)
T d1snya_ 3 NSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQAKELEDLAK-NHSNIHILEIDLRNFDAYDKLVADIEGVTK 80 (248)
T ss_dssp SEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSCHHHHHHHH-HCTTEEEEECCTTCGGGHHHHHHHHHHHHG
T ss_pred CEEEEeCCCCHHHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHh-cCCcEEEEEEEeccHHHHHHHHhhhHHHhh
Confidence 699999999999999999996 4784 99999999887776654333 456899999999999999999999854 6
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCC---------CCCCeEEEEeccCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSD---------YPSKRLIIVGSITGNTN 232 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~---------~~~g~iV~vSS~~~~~~ 232 (350)
++++|+||||||+......+.+.+.++|++++++|+.|+++++++++|+|+++. ...|++|+++|+.+..+
T Consensus 81 ~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~g~~~ 160 (248)
T d1snya_ 81 DQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQ 160 (248)
T ss_dssp GGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGGCST
T ss_pred cCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccccccccccccccccccccccC
Confidence 789999999999976656778899999999999999999999999999997631 12579999999987653
Q ss_pred CCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 233 TLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
. .+.+++.+|++||+|+.+|++.++.|+ .++||+||+|+||+|+|++
T Consensus 161 ~--------------------------------~~~~~~~~Y~aSKaal~~lt~~la~e~-~~~gI~vn~v~PG~v~T~m 207 (248)
T d1snya_ 161 G--------------------------------NTDGGMYAYRTSKSALNAATKSLSVDL-YPQRIMCVSLHPGWVKTDM 207 (248)
T ss_dssp T--------------------------------CCSCCCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEECCCSBCSTT
T ss_pred C--------------------------------CCCCChHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEEcCCCcccCCc
Confidence 2 124577899999999999999999999 6779999999999999997
Q ss_pred cc
Q 018819 313 LF 314 (350)
Q Consensus 313 ~~ 314 (350)
..
T Consensus 208 ~~ 209 (248)
T d1snya_ 208 GG 209 (248)
T ss_dssp TC
T ss_pred cc
Confidence 53
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.3e-36 Score=264.52 Aligned_cols=223 Identities=23% Similarity=0.245 Sum_probs=182.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
+|+||++|||||++|||+++|++|+++|+ +|++++|+.+.+++..+++. .+.....+|+.+.++++...+.+....
T Consensus 2 slkGKvalITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (248)
T d2o23a1 2 SVKGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKLG---NNCVFAPADVTSEKDVQTALALAKGKF 77 (248)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHHC---TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhC---CCccccccccccccccccccccccccc
Confidence 58999999999999999999999999996 89999999988888887774 567889999999999999999998888
Q ss_pred CCCcEEEEccccCCCC-----CCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCC----CCCCeEEEEeccCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPT-----AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSD----YPSKRLIIVGSITGNTNT 233 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~-----~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~----~~~g~iV~vSS~~~~~~~ 233 (350)
+.+|.+++|+++.... .++.+.+.++|++++++|+.+++++++++.|.|..+. .++|+||++||+.+..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~- 156 (248)
T d2o23a1 78 GRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEG- 156 (248)
T ss_dssp SCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHC-
T ss_pred ccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhccC-
Confidence 8999999998875432 3456778999999999999999999999999986542 13579999999998753
Q ss_pred CCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 234 LAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
.+++..|++||+|+.+|+++++.|+ .++|||||+|+||+|+|++.
T Consensus 157 ----------------------------------~~~~~~Y~asKaal~~lt~~la~e~-~~~gIrvN~I~PG~i~T~~~ 201 (248)
T d2o23a1 157 ----------------------------------QVGQAAYSASKGGIVGMTLPIARDL-APIGIRVMTIAPGLFGTPLL 201 (248)
T ss_dssp ----------------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCCC--
T ss_pred ----------------------------------CCCchHHHHHHHHHHHHHHHHHHHh-cccCcceeeeccCceecchh
Confidence 3678999999999999999999999 67899999999999999875
Q ss_pred cccchhhHHhhhhhhHHhh--hcCccchhhhhhhcccc
Q 018819 314 FREHIPLFRLLFPPFQKYI--TKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~a~~i~~~ 349 (350)
...... ....+.+.. ..++.+|||+|+.+++|
T Consensus 202 ~~~~~~----~~~~~~~~~pl~~R~g~peevA~~v~fL 235 (248)
T d2o23a1 202 TSLPEK----VCNFLASQVPFPSRLGDPAEYAHLVQAI 235 (248)
T ss_dssp ------------CHHHHTCSSSCSCBCHHHHHHHHHHH
T ss_pred hcCCHH----HHHHHHhcCCCCCCCcCHHHHHHHHHHH
Confidence 321111 111111221 25578999999988764
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=1.5e-34 Score=253.62 Aligned_cols=203 Identities=13% Similarity=0.097 Sum_probs=163.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc--C
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS--G 162 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~--~ 162 (350)
+||++|||||++|||+++|+.|+++|+ +|++++++..+ .......+.+|.++.++.+.+.+.+.+. .
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G~-~V~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVENE----------EASASVIVKMTDSFTEQADQVTAEVGKLLGD 69 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCCT----------TSSEEEECCCCSCHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCccc----------cccccceeecccCcHHHHHHHHHHHHHHhCC
Confidence 479999999999999999999999995 89988886432 1224456778999898888888877664 3
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
+++|+||||||.......+.+.+.++|++++++|+.++++++++++|+|++ +|+||++||.++..+
T Consensus 70 ~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~----~G~Iv~isS~~~~~~---------- 135 (236)
T d1dhra_ 70 QKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKE----GGLLTLAGAKAALDG---------- 135 (236)
T ss_dssp CCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE----EEEEEEECCGGGGSC----------
T ss_pred CCceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhccc----ccceeEEccHHHcCC----------
Confidence 579999999997655456677788999999999999999999999999976 479999999988753
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcC-CCCcEEEEeeCCcccCCcccccchhhH
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE-ETGIAFASLYPGCIATTGLFREHIPLF 321 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~-~~gi~v~~v~PG~v~t~~~~~~~~~~~ 321 (350)
.++...|++||+|+.+|+++++.|+.. ++||+||+|+||+|+||+.....
T Consensus 136 -------------------------~~~~~~Y~asKaal~~lt~~la~El~~~~~gI~vn~v~PG~v~T~~~~~~~---- 186 (236)
T d1dhra_ 136 -------------------------TPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPMNRKSM---- 186 (236)
T ss_dssp -------------------------CTTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHHHHHHS----
T ss_pred -------------------------ccCCcccHHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeccCcCCcchhhC----
Confidence 467889999999999999999999942 57999999999999998642211
Q ss_pred HhhhhhhHHhhhcCccchhhhhhhccc
Q 018819 322 RLLFPPFQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~s~~~~a~~i~~ 348 (350)
+. .....+.+||++++.+.+
T Consensus 187 ----~~---~~~~~~~~pe~va~~~~~ 206 (236)
T d1dhra_ 187 ----PE---ADFSSWTPLEFLVETFHD 206 (236)
T ss_dssp ----TT---SCGGGSEEHHHHHHHHHH
T ss_pred ----cc---chhhcCCCHHHHHHHHHH
Confidence 11 001235677887777654
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7e-33 Score=246.16 Aligned_cols=224 Identities=13% Similarity=0.140 Sum_probs=178.2
Q ss_pred ccCCCEEEEEcCCC--chHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASS--GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 83 ~l~~~~~lItGgs~--gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
.|+||++|||||++ |||+++|+.|+++|+ +|++++|+++..+...+ +.........+.+|+++..++...++++.+
T Consensus 2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~-~V~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (258)
T d1qsga_ 2 FLSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEE-FAAQLGSDIVLQCDVAEDASIDTMFAELGK 79 (258)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHH-HHHHTTCCCEEECCTTCHHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCchhHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH-HHhhcCCcceeecccchHHHHHHHHHHhhh
Confidence 47999999999998 899999999999996 89999998655444433 333334667889999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCC----CCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTA----KEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~----~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~ 236 (350)
.++++|++|||++...... ..+....+.|...+++|+.+.+.+++.+.+.+.+. +.||++||..+..+
T Consensus 80 ~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~Ii~iss~~~~~~---- 151 (258)
T d1qsga_ 80 VWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPG----SALLTLSYLGAERA---- 151 (258)
T ss_dssp TCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEE----EEEEEEECGGGTSB----
T ss_pred cccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCC----cEEEEecchhhccC----
Confidence 9999999999998853311 12345678899999999999999999999988663 58999999887643
Q ss_pred CCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccccc
Q 018819 237 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 316 (350)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~ 316 (350)
.+....|++||+|+++|+++++.|+ .++|||||+|+||+|+|++....
T Consensus 152 -------------------------------~~~~~~Y~~sKaal~~ltr~lA~el-~~~gIrVN~I~PG~i~T~~~~~~ 199 (258)
T d1qsga_ 152 -------------------------------IPNYNVMGLAKASLEANVRYMANAM-GPEGVRVNAISAGPIRTLAASGI 199 (258)
T ss_dssp -------------------------------CTTTTHHHHHHHHHHHHHHHHHHHH-TTTTEEEEEEEECCCCCTTGGGS
T ss_pred -------------------------------CCCcHHHHHHHHHHHHHHHHHHHHh-CccCceeeccccccccccccccc
Confidence 3677899999999999999999999 78899999999999999975332
Q ss_pred chhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 317 HIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
. ...........+.+..++.+|||+|+.+.+|
T Consensus 200 ~-~~~~~~~~~~~~~pl~R~~~peeia~~v~fL 231 (258)
T d1qsga_ 200 K-DFRKMLAHCEAVTPIRRTVTIEDVGNSAAFL 231 (258)
T ss_dssp T-THHHHHHHHHHHSTTSSCCCHHHHHHHHHHH
T ss_pred c-hhhhHHHHHHhCCCCCCCcCHHHHHHHHHHH
Confidence 1 1111112222333456788999999988764
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=100.00 E-value=1.4e-32 Score=247.43 Aligned_cols=219 Identities=15% Similarity=0.116 Sum_probs=160.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEec-ChhHHHHHHHHhccC-CCce-----------------EEEEccCCCH
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMA-KENY-----------------TIMHLDLASL 148 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r-~~~~~~~~~~~l~~~-~~~v-----------------~~~~~Dvs~~ 148 (350)
++|||||++|||+++|+.|+++|+ +|+++++ +.+..+++.+++... +... ..+.+|+++.
T Consensus 4 VAlITGas~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv~~~ 82 (284)
T d1e7wa_ 4 VALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTLF 82 (284)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBCHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCCHHHHHHHHHHHHhhcCCceEEEEeecccccccccccccccccCCCH
Confidence 899999999999999999999997 7776654 566666666666432 2233 3455679999
Q ss_pred HHHHHHHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHH--------------HHHhhhhHHHHHHHHHHHHHHhcC
Q 018819 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFE--------------LSVGTNHLGHFLLSRLLLDDLKQS 214 (350)
Q Consensus 149 ~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~--------------~~~~~n~~g~~~l~~~~~~~~~~~ 214 (350)
++++++++++.+++|+||+||||||+..+ .++.+.+.++|+ .++.+|+.+++++.+.+.+.+...
T Consensus 83 ~~v~~~~~~~~~~~G~iDiLVnnAG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~ 161 (284)
T d1e7wa_ 83 TRCAELVAACYTHWGRCDVLVNNASSFYP-TPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGT 161 (284)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCC-CCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhCCCCEEEecCCccCC-CchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhhh
Confidence 99999999999999999999999999755 566666665554 478999999999999998875421
Q ss_pred ----CCCCCeEEEEeccCCCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHH
Q 018819 215 ----DYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHR 290 (350)
Q Consensus 215 ----~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~ 290 (350)
....++||+++|..+..+ .+++.+|++||+|+.+|++.+++
T Consensus 162 ~~~~~~~~~~ii~~~s~~~~~~-----------------------------------~~~~~~Y~asKaal~~lt~~lA~ 206 (284)
T d1e7wa_ 162 PAKHRGTNYSIINMVDAMTNQP-----------------------------------LLGYTIYTMAKGALEGLTRSAAL 206 (284)
T ss_dssp CGGGSCSCEEEEEECCTTTTSC-----------------------------------CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCcccccccccccCC-----------------------------------ccceeeeccccccchhhhHHHHH
Confidence 112468888888877643 46788999999999999999999
Q ss_pred hhcCCCCcEEEEeeCCcccCCcccccchhhHHhhhhhhHHhh-hcCccchhhhhhhcccc
Q 018819 291 RFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYI-TKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 291 e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~a~~i~~~ 349 (350)
|+ .++|||||+|+||++.+....... .......+.. ..++.+|||+|+.+++|
T Consensus 207 el-~~~gIrvN~I~PG~t~~~~~~~~~-----~~~~~~~~~pl~~R~~~peeiA~~v~fL 260 (284)
T d1e7wa_ 207 EL-APLQIRVNGVGPGLSVLVDDMPPA-----VWEGHRSKVPLYQRDSSAAEVSDVVIFL 260 (284)
T ss_dssp HH-GGGTEEEEEEEESSBCCGGGSCHH-----HHHHHHTTCTTTTSCBCHHHHHHHHHHH
T ss_pred Hh-CCccccccccccccccccccCCHH-----HHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 99 678999999999997664322111 0011111111 25677999999988764
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=5e-33 Score=243.71 Aligned_cols=177 Identities=13% Similarity=0.139 Sum_probs=149.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH--cCCC
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR--SGRP 164 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~--~~g~ 164 (350)
+++|||||++|||+++|+.|+++|+ +|++++|+..+. ......+.+|+.+.++.....+.+.. ++++
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G~-~V~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 71 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSANDQ----------ADSNILVDGNKNWTEQEQSILEQTASSLQGSQ 71 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCCTT----------SSEEEECCTTSCHHHHHHHHHHHHHHHHTTCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCchhc----------ccccceeccccCchhHHHHHHHHHHHHhcCCC
Confidence 4579999999999999999999995 999999985431 12345667899988888877777665 5689
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
||+||||||+......+.+.+.+.|+.++++|+.++++++++++|+|++ +|+||++||..+..+
T Consensus 72 iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~----~g~Iv~isS~~~~~~------------ 135 (235)
T d1ooea_ 72 VDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKP----GGLLQLTGAAAAMGP------------ 135 (235)
T ss_dssp EEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE----EEEEEEECCGGGGSC------------
T ss_pred eeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhccccccc----ceEEEEeccHHhcCC------------
Confidence 9999999998655455666667899999999999999999999999976 369999999988753
Q ss_pred cccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcC-CCCcEEEEeeCCcccCCcc
Q 018819 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE-ETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~-~~gi~v~~v~PG~v~t~~~ 313 (350)
.+++..|++||+|+.+|+++++.|+.. ..+|+||+|+||+++|++.
T Consensus 136 -----------------------~~~~~~Y~asKaal~~l~~~la~e~~~~~~~i~v~~i~Pg~~~T~~~ 182 (235)
T d1ooea_ 136 -----------------------TPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPMN 182 (235)
T ss_dssp -----------------------CTTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHHH
T ss_pred -----------------------cccccchHHHHHHHHHHHHHHHHHhccCCCceEEEEEecCcCcCcch
Confidence 468899999999999999999999942 4799999999999999864
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=100.00 E-value=4.5e-33 Score=255.86 Aligned_cols=187 Identities=11% Similarity=0.139 Sum_probs=150.1
Q ss_pred CCCEEEEEc--CCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhc-cCC-----------CceEEEE--------
Q 018819 85 RKGSVIITG--ASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG-MAK-----------ENYTIMH-------- 142 (350)
Q Consensus 85 ~~~~~lItG--gs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~-~~~-----------~~v~~~~-------- 142 (350)
.+|++|||| +++|||+++|+.|+++|| +|++++++............ ..+ .......
T Consensus 1 n~kVAlITGaa~s~GIG~aiA~~la~~GA-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (329)
T d1uh5a_ 1 NEDICFIAGIGDTNGYGWGIAKELSKRNV-KIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTA 79 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTTC-EEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSG
T ss_pred CCcEEEEeCCCCCChHHHHHHHHHHHcCC-EEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhh
Confidence 368999999 568999999999999997 89998887654433322211 100 1112232
Q ss_pred ------------ccCCCHHHHHHHHHHHHHcCCCCcEEEEccccCCC-CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHH
Q 018819 143 ------------LDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLD 209 (350)
Q Consensus 143 ------------~Dvs~~~~v~~~~~~~~~~~g~id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~ 209 (350)
+|+++.++++++++.+.+.+|+||+||||||.... ..++.+.+.++|++++++|+++.+.++|+++|
T Consensus 80 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~ 159 (329)
T d1uh5a_ 80 NDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVN 159 (329)
T ss_dssp GGCCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGG
T ss_pred cccchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHh
Confidence 46778888999999999999999999999997543 24677899999999999999999999999999
Q ss_pred HHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCc-hhchhhhHHHHHHHHHHH
Q 018819 210 DLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDG-AKAYKDSKVCNMLTMQEF 288 (350)
Q Consensus 210 ~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~asKaa~~~~~~~l 288 (350)
+|.+ +|+||++||.++..+ +|+ ...|++||+++++|++.+
T Consensus 160 ~m~~----~GsIv~iss~~~~~~-----------------------------------~p~y~~~y~asKaal~~ltr~l 200 (329)
T d1uh5a_ 160 IMKP----QSSIISLTYHASQKV-----------------------------------VPGYGGGMSSAKAALESDTRVL 200 (329)
T ss_dssp GEEE----EEEEEEEECGGGTSC-----------------------------------CTTCTTTHHHHHHHHHHHHHHH
T ss_pred hccc----ccccccceeehhccc-----------------------------------ccccchhhhhhhccccccchhh
Confidence 9976 369999999887643 233 457999999999999999
Q ss_pred HHhhcCCCCcEEEEeeCCcccCC
Q 018819 289 HRRFHEETGIAFASLYPGCIATT 311 (350)
Q Consensus 289 a~e~~~~~gi~v~~v~PG~v~t~ 311 (350)
+.|+..++|||||+|+||+|+|+
T Consensus 201 A~Ela~~~gIRVNaI~PG~i~T~ 223 (329)
T d1uh5a_ 201 AYHLGRNYNIRINTISAGPLKSR 223 (329)
T ss_dssp HHHHHHHHCCEEEEEEECCCCCT
T ss_pred HHHHhcccCcEEEEEecCcccch
Confidence 99993236999999999999994
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.98 E-value=9.2e-33 Score=245.55 Aligned_cols=182 Identities=21% Similarity=0.247 Sum_probs=153.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh---hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF---LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~---~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+++|||||||++|||+++|++|+++|+.+|++++|+. +..++..++++..+.++.++.||++|.++++++++.+.+.
T Consensus 8 p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~~~ 87 (259)
T d2fr1a1 8 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDD 87 (259)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTT
T ss_pred CcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhcccccc
Confidence 5679999999999999999999999987899999874 4456667777777889999999999999999999987654
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
+++|++|||+|+... .++.+.+.++|+.++++|+.+++++.+.+.+ .+ .++||++||+++..+
T Consensus 88 -~~i~~vv~~ag~~~~-~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~----~~--~~~iv~~SS~a~~~g--------- 150 (259)
T d2fr1a1 88 -VPLSAVFHAAATLDD-GTVDTLTGERIERASRAKVLGARNLHELTRE----LD--LTAFVLFSSFASAFG--------- 150 (259)
T ss_dssp -SCEEEEEECCCCCCC-CCGGGCCHHHHHHHTHHHHHHHHHHHHHHTT----SC--CSEEEEEEEHHHHTC---------
T ss_pred -ccccccccccccccc-cccccccHHHHHHHhhhhccchhHHHHHhhc----cC--CceEeeecchhhccC---------
Confidence 589999999999765 7888999999999999999999999886432 22 479999999999875
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccc
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~ 314 (350)
.+++..|+++|++++.|++.++.+ |+++++|+||.+.++++.
T Consensus 151 --------------------------~~~~~~YaAaka~l~~la~~~~~~-----Gi~v~~I~pg~~~~~g~~ 192 (259)
T d2fr1a1 151 --------------------------APGLGGYAPGNAYLDGLAQQRRSD-----GLPATAVAWGTWAGSGMA 192 (259)
T ss_dssp --------------------------CTTCTTTHHHHHHHHHHHHHHHHT-----TCCCEEEEECCBC-----
T ss_pred --------------------------CcccHHHHHHHHhHHHHHHHHHhC-----CCCEEECCCCcccCCccc
Confidence 368889999999999888766543 999999999999877654
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.98 E-value=4.6e-32 Score=245.66 Aligned_cols=229 Identities=15% Similarity=0.100 Sum_probs=169.6
Q ss_pred ccccCCCEEEEEcCCC--chHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhcc---------CCC--c-eEEEEcc--
Q 018819 81 KKTLRKGSVIITGASS--GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM---------AKE--N-YTIMHLD-- 144 (350)
Q Consensus 81 ~~~l~~~~~lItGgs~--gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~---------~~~--~-v~~~~~D-- 144 (350)
+++|+||++|||||++ |||+++|+.|+++|| +|++++|+............. .+. . -....+|
T Consensus 3 ~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (297)
T d1d7oa_ 3 PIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGA-EILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAV 81 (297)
T ss_dssp CCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTC-EEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTT
T ss_pred CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhh
Confidence 3578999999999876 999999999999997 899999875443322221110 000 1 1222333
Q ss_pred ------------------CCCHHHHHHHHHHHHHcCCCCcEEEEccccCC-CCCCCCCCCHHHHHHHHhhhhHHHHHHHH
Q 018819 145 ------------------LASLDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFLLSR 205 (350)
Q Consensus 145 ------------------vs~~~~v~~~~~~~~~~~g~id~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~~n~~g~~~l~~ 205 (350)
.++..+++++++++.+++|+||+||||||... ...++.+.+.++|++.+++|+.+++++++
T Consensus 82 ~~~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~ 161 (297)
T d1d7oa_ 82 FDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLS 161 (297)
T ss_dssp CCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHH
T ss_pred ccccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhhh
Confidence 24556678999999999999999999999853 23568889999999999999999999999
Q ss_pred HHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHH
Q 018819 206 LLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTM 285 (350)
Q Consensus 206 ~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~ 285 (350)
++++.+.++ |+++++++.+..... .+....|+++|+++..++
T Consensus 162 ~~~~~~~~~----g~~~~~~~~~~~~~~----------------------------------~~~~~~y~~aKaa~~~l~ 203 (297)
T d1d7oa_ 162 HFLPIMNPG----GASISLTYIASERII----------------------------------PGYGGGMSSAKAALESDT 203 (297)
T ss_dssp HHGGGEEEE----EEEEEEECGGGTSCC----------------------------------TTCTTTHHHHHHHHHHHH
T ss_pred HHHHHhhcC----Ccceeeeehhhcccc----------------------------------cccccceecccccccccc
Confidence 999988774 477777776654321 246678999999999999
Q ss_pred HHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 286 QEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 286 ~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
+.++.++..++|||||+|+||+|+|++....... ...........+..++.+|||+|+.+++|
T Consensus 204 ~~~a~e~~~~~gIrvN~I~PG~i~T~~~~~~~~~-~~~~~~~~~~~PlgR~~~peevA~~v~fL 266 (297)
T d1d7oa_ 204 RVLAFEAGRKQNIRVNTISAGPLGSRAAKAIGFI-DTMIEYSYNNAPIQKTLTADEVGNAAAFL 266 (297)
T ss_dssp HHHHHHHHHHHCCEEEEEEECCCBCCCSSCCSHH-HHHHHHHHHHSSSCCCBCHHHHHHHHHHH
T ss_pred cccchhccccceEEecccccccccchhhhhccCC-HHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 9999998545799999999999999976432111 11111122222346678999999988765
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=99.97 E-value=2.7e-31 Score=237.85 Aligned_cols=224 Identities=13% Similarity=0.099 Sum_probs=161.6
Q ss_pred ccCCCEEEEEcCCC--chHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASS--GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 83 ~l~~~~~lItGgs~--gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
.|+||++|||||+| |||+++|+.|+++|+ +|++++|++. +++..+++...+....++.+|+++.++++++++++.+
T Consensus 2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga-~V~i~~r~~~-~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 79 (274)
T d2pd4a1 2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNES-LEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKK 79 (274)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTT-THHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCcHHHHHHHHHHHHCCC-EEEEEeCCHH-HHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHH
Confidence 47999999999765 999999999999996 9999999854 3334455544556778899999999999999999999
Q ss_pred cCCCCcEEEEccccCCCCC---CCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTA---KEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 237 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~---~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~ 237 (350)
.+|++|++|||+|...... .+.+..++.+...+.++..+.+.+.+...+.+.. ++.|+++||.+...+
T Consensus 80 ~~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~s~~~~~~~----- 150 (274)
T d2pd4a1 80 DLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNN----GASVLTLSYLGSTKY----- 150 (274)
T ss_dssp HTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE----EEEEEEEECGGGTSB-----
T ss_pred HcCCCCeEEeecccccccccccccccccchhhhhhhcccccccccccccccccccc----Ccceeeecccccccc-----
Confidence 9999999999999864322 2223344455555555555555555554443322 234555555544421
Q ss_pred CCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccc
Q 018819 238 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 317 (350)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~ 317 (350)
.+....|+++|+++.+++++++.|+ .++|||||+|+||+++|++....
T Consensus 151 ------------------------------~~~~~~y~asK~al~~ltr~lA~e~-~~~GIrvN~I~PG~v~T~~~~~~- 198 (274)
T d2pd4a1 151 ------------------------------MAHYNVMGLAKAALESAVRYLAVDL-GKHHIRVNALSAGPIRTLASSGI- 198 (274)
T ss_dssp ------------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEECCCCCTTGGGS-
T ss_pred ------------------------------cccchhhhHHHHHHHHHHHhhHHHh-cCcCceecccccCcccCcccccc-
Confidence 3567789999999999999999999 77899999999999999865321
Q ss_pred hhhHHhhhhhhHHhhhcCccchhhhhhhcccc
Q 018819 318 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~s~~~~a~~i~~~ 349 (350)
.+...............++.+|+|+|+.+++|
T Consensus 199 ~~~~~~~~~~~~~~p~~r~~~pedIA~~v~fL 230 (274)
T d2pd4a1 199 ADFRMILKWNEINAPLRKNVSLEEVGNAGMYL 230 (274)
T ss_dssp TTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHH
T ss_pred CchHHHHHHHhhhhhccCCcCHHHHHHHHHHH
Confidence 11111112222333457789999999988764
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.97 E-value=1.9e-31 Score=234.25 Aligned_cols=211 Identities=22% Similarity=0.202 Sum_probs=164.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
+|++|||||++|||+++|+.|+++|+ +|++++|+.+ +.+...+++|+++......+........ ..
T Consensus 1 DK~alITGas~GIG~aiA~~la~~Ga-~V~i~~~~~~------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~ 66 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKARGY-RVVVLDLRRE------------GEDLIYVEGDVTREEDVRRAVARAQEEA-PL 66 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCC------------SSSSEEEECCTTCHHHHHHHHHHHHHHS-CE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCcc------------cccceEeeccccchhhhHHHHHhhhccc-cc
Confidence 58999999999999999999999996 9999999753 2356788999999999999988877765 45
Q ss_pred cEEEEccccCCC---CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCC----CCCCeEEEEeccCCCCCCCCCCC
Q 018819 166 DVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSD----YPSKRLIIVGSITGNTNTLAGNV 238 (350)
Q Consensus 166 d~lv~~Ag~~~~---~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~----~~~g~iV~vSS~~~~~~~~~~~~ 238 (350)
+.++++++.... .......+.+.|++++++|+.+++.+++.+.+.+.+.. ...|+||++||..+..+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~------ 140 (241)
T d1uaya_ 67 FAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEG------ 140 (241)
T ss_dssp EEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHC------
T ss_pred cchhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhccC------
Confidence 666666665332 13344567899999999999999999999999854321 12589999999998754
Q ss_pred CCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccch
Q 018819 239 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 318 (350)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~ 318 (350)
.+++..|++||+|+.+|+++++.|+ .++|||||+|+||+|+|+++.....
T Consensus 141 -----------------------------~~~~~~Y~asKaal~~lt~~lA~el-a~~gIrVN~V~PG~i~T~~~~~~~~ 190 (241)
T d1uaya_ 141 -----------------------------QIGQAAYAASKGGVVALTLPAAREL-AGWGIRVVTVAPGLFDTPLLQGLPE 190 (241)
T ss_dssp -----------------------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSCSSHHHHTSCH
T ss_pred -----------------------------CCCchhhHHHHHHHHHHHHHHHHHH-hhcCCceeeecCCcccccccchhhh
Confidence 3678899999999999999999999 6789999999999999987643222
Q ss_pred hhHHhhhhhhHHhh-hcCccchhhhhhhcccc
Q 018819 319 PLFRLLFPPFQKYI-TKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 319 ~~~~~~~~~~~~~~-~~~~~s~~~~a~~i~~~ 349 (350)
.... ....+.. ..++.+|||+|+.+++|
T Consensus 191 ~~~~---~~~~~~~~~~R~g~pedvA~~v~fL 219 (241)
T d1uaya_ 191 KAKA---SLAAQVPFPPRLGRPEEYAALVLHI 219 (241)
T ss_dssp HHHH---HHHTTCCSSCSCCCHHHHHHHHHHH
T ss_pred hHHH---HHHhcCCCCCCCcCHHHHHHHHHHH
Confidence 1111 1111111 25577999999988764
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=99.97 E-value=3.6e-30 Score=229.71 Aligned_cols=223 Identities=11% Similarity=0.083 Sum_probs=167.6
Q ss_pred ccCCCEEEEEc--CCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 83 TLRKGSVIITG--ASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 83 ~l~~~~~lItG--gs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
.|+||++|||| |++|||+++|+.|+++|| +|++++|+.++..+... +..+.+...++||++++++++.+++.+.+
T Consensus 3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga-~Vil~~~~~~~~~~~~~--~~~~~~~~~~~~dv~~~~~~~~~~~~v~~ 79 (268)
T d2h7ma1 3 LLDGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRLRLIQRIT--DRLPAKAPLLELDVQNEEHLASLAGRVTE 79 (268)
T ss_dssp TTTTCEEEECCCSSTTCHHHHHHHHHHHTTC-EEEEEECSCHHHHHHHH--TTSSSCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHH--HHcCCceeeEeeecccccccccccchhhh
Confidence 57999999999 457999999999999997 89999998766543322 23456778899999999999999998876
Q ss_pred c---CCCCcEEEEccccCCC----CCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCC
Q 018819 161 S---GRPLDVLVCNAAVYLP----TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNT 233 (350)
Q Consensus 161 ~---~g~id~lv~~Ag~~~~----~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~ 233 (350)
. ++++|++|||+|.... ...+.+.+.++|...+++|+.+.+...+...+.+.. +.+++++|.....
T Consensus 80 ~~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~s~~~~~-- 152 (268)
T d2h7ma1 80 AIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNP-----GGSIVGMDFDPSR-- 152 (268)
T ss_dssp HHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE-----EEEEEEEECCCSS--
T ss_pred ccccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhccc-----ccccccccccccc--
Confidence 4 5789999999997531 235567889999999999999999999988776543 2455555544432
Q ss_pred CCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 234 LAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
..|+...|+++|+++.+++++++.|+ .++|||||+|+||+|+|++.
T Consensus 153 ---------------------------------~~p~~~~y~~sK~a~~~ltr~lA~e~-~~~gIrVN~V~PG~v~T~~~ 198 (268)
T d2h7ma1 153 ---------------------------------AMPAYNWMTVAKSALESVNRFVAREA-GKYGVRSNLVAAGPIRTLAM 198 (268)
T ss_dssp ---------------------------------CCTTTHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEECCCCCHHH
T ss_pred ---------------------------------cCcccchhhccccchhhccccchhhh-hccCCcceEEecCCCCChhh
Confidence 24678899999999999999999999 77899999999999999865
Q ss_pred cccc---h-hhHHhhhhhhHH-----hh-hcCccchhhhhhhcccc
Q 018819 314 FREH---I-PLFRLLFPPFQK-----YI-TKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 314 ~~~~---~-~~~~~~~~~~~~-----~~-~~~~~s~~~~a~~i~~~ 349 (350)
..-. . .........+.. .+ .+++.+|+|+|+.+.+|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~rr~~~p~dva~~v~fL 244 (268)
T d2h7ma1 199 SAIVGGALGEEAGAQIQLLEEGWDQRAPIGWNMKDATPVAKTVCAL 244 (268)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHHHHHCTTCCCTTCCHHHHHHHHHH
T ss_pred hhhccchhhhhhccchHHHHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 2111 0 000000111111 11 23478999999988764
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.97 E-value=9e-30 Score=226.71 Aligned_cols=219 Identities=17% Similarity=0.185 Sum_probs=161.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhH-HHHHHHHhcc-CCCceEEEEccCC----CHHHHHHHHHHHHHc
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLK-AERAAKSAGM-AKENYTIMHLDLA----SLDSVRQFVDTFRRS 161 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~-~~~~~~~l~~-~~~~v~~~~~Dvs----~~~~v~~~~~~~~~~ 161 (350)
++|||||++|||+++|+.|+++|+ +|++++|+.++ .+++.+++.. .+.+...+.+|+. +.+.++++++.+.++
T Consensus 3 vAlVTGas~GIG~aia~~la~~G~-~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRA 81 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHHHHH
Confidence 899999999999999999999996 99999988544 4556666643 3456677776554 366788888889999
Q ss_pred CCCCcEEEEccccCCCCCCC----------CCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCC---CCCeEEEEeccC
Q 018819 162 GRPLDVLVCNAAVYLPTAKE----------PTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY---PSKRLIIVGSIT 228 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~----------~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~---~~g~iV~vSS~~ 228 (350)
+|+||++|||||+..+.... .+...+.+...+..|+.+.+...+...+.+..... ..+.+++++|..
T Consensus 82 ~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (266)
T d1mxha_ 82 FGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAM 161 (266)
T ss_dssp HSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECCGG
T ss_pred hCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhhhhcc
Confidence 99999999999986542211 12345667788899999999998888776543221 135777788777
Q ss_pred CCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcc
Q 018819 229 GNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI 308 (350)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v 308 (350)
+.. +.+++..|++||++++++++.++.++ .++|||||+|+||+|
T Consensus 162 ~~~-----------------------------------~~~~~~~Y~asKaal~~lt~~lA~e~-~~~gIrVN~I~PG~i 205 (266)
T d1mxha_ 162 TDL-----------------------------------PLPGFCVYTMAKHALGGLTRAAALEL-APRHIRVNAVAPGLS 205 (266)
T ss_dssp GGS-----------------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESSB
T ss_pred ccc-----------------------------------cCcchhhhhhhHHHHhhhHHHHHHHh-CccCcEEEEeccCcE
Confidence 653 24788999999999999999999999 678999999999999
Q ss_pred cCCcccccchhhHHhhhhhhHHhh--hcCccchhhhhhhcccc
Q 018819 309 ATTGLFREHIPLFRLLFPPFQKYI--TKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 309 ~t~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~a~~i~~~ 349 (350)
+|++...+... ..+.+.. .+++.+|||+|+.+++|
T Consensus 206 ~t~~~~~~~~~------~~~~~~~pl~r~~~~peeva~~v~fL 242 (266)
T d1mxha_ 206 LLPPAMPQETQ------EEYRRKVPLGQSEASAAQIADAIAFL 242 (266)
T ss_dssp SCCSSSCHHHH------HHHHTTCTTTSCCBCHHHHHHHHHHH
T ss_pred eccccCCHHHH------HHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 99865432111 1111111 13347999999988764
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.94 E-value=3.2e-28 Score=215.51 Aligned_cols=224 Identities=19% Similarity=0.223 Sum_probs=143.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc-CCCC
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS-GRPL 165 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~-~g~i 165 (350)
|++|||||++|||+++|++|+++|+ +|++++|+.++ ..+|+++.+..+....++..+ .+.+
T Consensus 2 kVvlITGas~GIG~aiA~~la~~Ga-~V~~~~~~~~~-----------------~~~d~~~~~~~~~~~~~~~~~~~~~i 63 (257)
T d1fjha_ 2 SIIVISGCATGIGAATRKVLEAAGH-QIVGIDIRDAE-----------------VIADLSTAEGRKQAIADVLAKCSKGM 63 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSSS-----------------EECCTTSHHHHHHHHHHHHTTCTTCC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECChHH-----------------HHHHhcCHHHHHHHHHHHHHHhCCCC
Confidence 6999999999999999999999996 89999887432 357999999988877666554 4679
Q ss_pred cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcc
Q 018819 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (350)
|++|||||+... .+.|+....+|..+...+.+...+.+.+.. .+.+.++++.....-..... ....
T Consensus 64 d~lv~~Ag~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~ 129 (257)
T d1fjha_ 64 DGLVLCAGLGPQ--------TKVLGNVVSVNYFGATELMDAFLPALKKGH--QPAAVVISSVASAHLAFDKN----PLAL 129 (257)
T ss_dssp SEEEECCCCCTT--------CSSHHHHHHHHTHHHHHHHHHHHHHHHTSS--SCEEEEECCGGGGSSCGGGC----TTHH
T ss_pred cEEEEcCCCCCc--------HHHHHHHHHHHHHHHHHHHHHhhhhhhhhc--cCcceeeeeccccchhhhhh----hhhh
Confidence 999999997432 244778899999999999999999887765 34677776654332100000 0000
Q ss_pred ccccccccCCCCC-CCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcccccchhhHHhh
Q 018819 246 DLRGFAGGLNGLN-SSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLL 324 (350)
Q Consensus 246 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~ 324 (350)
. ...+ .... ..........++..+|++||+|+++|+++++.|| .++|||||+|+||+|+|+++...... ....
T Consensus 130 ~---~~~g-~~~~i~s~~~~~~~~~~~~~Y~asKaal~~ltr~lA~el-~~~gIrVN~I~PG~i~T~~~~~~~~~-~~~~ 203 (257)
T d1fjha_ 130 A---LEAG-EEAKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAW-GEAGVRLNTIAPGATETPLLQAGLQD-PRYG 203 (257)
T ss_dssp H---HHHT-CHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHH-HHTTCEEEEEEECC-----------------
T ss_pred h---ccCC-cEEEEeeehhccCCCcchHHHHHHhhhhhcccccccccc-ccccccccccccCCcCChhHHhhcCC-HHHH
Confidence 0 0000 0000 0000001123456789999999999999999999 67899999999999999976332111 0000
Q ss_pred hhhhHH--hhhcCccchhhhhhhcccc
Q 018819 325 FPPFQK--YITKGYVSEDEAGKRLAQV 349 (350)
Q Consensus 325 ~~~~~~--~~~~~~~s~~~~a~~i~~~ 349 (350)
..+.+ .+..++.+|||+|+.+++|
T Consensus 204 -~~~~~~~~PlgR~g~p~eva~~v~fL 229 (257)
T d1fjha_ 204 -ESIAKFVPPMGRRAEPSEMASVIAFL 229 (257)
T ss_dssp ------CCCSTTSCCCTHHHHHHHHHH
T ss_pred -HHHHhcCCCCCCCcCHHHHHHHHHHH
Confidence 01111 1235677899999888764
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=1.3e-19 Score=167.22 Aligned_cols=185 Identities=12% Similarity=0.089 Sum_probs=134.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh-----hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDF-----LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~-----~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
|++|||||+|.||.+++++|.++| +.|+.++|.. .+.+....+......++.++.+|++|.++++++++.+
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKG-YEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREV--- 77 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHH---
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCc-CEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhcc---
Confidence 789999999999999999999999 6999999843 2233333333334457899999999999999999876
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
.+|+++|+|+...... +.++.+..+++|+.|+.++++++...-.+. ..+||++||...+ |.
T Consensus 78 --~~d~v~h~aa~~~~~~-----~~~~~~~~~~~Nv~gt~nllea~~~~~~~~---~~r~i~~SS~~vY-G~-------- 138 (357)
T d1db3a_ 78 --QPDEVYNLGAMSHVAV-----SFESPEYTADVDAMGTLRLLEAIRFLGLEK---KTRFYQASTSELY-GL-------- 138 (357)
T ss_dssp --CCSEEEECCCCCTTTT-----TTSCHHHHHHHHTHHHHHHHHHHHHTTCTT---TCEEEEEEEGGGG-TT--------
T ss_pred --CCCEEEEeecccccch-----hhhCHHHHHHHHHHHHHHHHHHHHHhCCCC---CcEEEEEEchhhh-CC--------
Confidence 7999999999864422 335567789999999999999986543222 2489999996543 21
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
....+..|..+..+...|+.||.+.+.+++.+++++ ++++..+.|+.|.+|..
T Consensus 139 ---------------~~~~~~~E~~~~~P~~~Y~~sK~~~E~~~~~~~~~~----~l~~~ilR~~~vyGp~~ 191 (357)
T d1db3a_ 139 ---------------VQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESY----GMYACNGILFNHESPRR 191 (357)
T ss_dssp ---------------CCSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECCEECTTS
T ss_pred ---------------CCCCCcCCCCCCCCCChHHHHHHHHHHHHHHHHHHh----CCCEEEEEeccccCCCC
Confidence 011223344444556789999999999999888876 89999999999988753
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=99.74 E-value=3e-20 Score=156.42 Aligned_cols=112 Identities=14% Similarity=0.188 Sum_probs=93.8
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
.+|+||++|||||++|||+++|+.|+++|+ +|++++|+.++.++..+++... .++....+|++|.+++++++
T Consensus 19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~------ 90 (191)
T d1luaa1 19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKR-FKVNVTAAETADDASRAEAV------ 90 (191)
T ss_dssp SCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHH-HTCCCEEEECCSHHHHHHHT------
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhc-cchhhhhhhcccHHHHHHHh------
Confidence 478999999999999999999999999996 9999999999988888777543 24567889999999888765
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHH
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 207 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~ 207 (350)
+++|+||||||+. +..++.|+|+..+++|+.+.++....+
T Consensus 91 -~~iDilin~Ag~g-----~~~~~~e~~~~~~~~nv~~~~~~~~~~ 130 (191)
T d1luaa1 91 -KGAHFVFTAGAIG-----LELLPQAAWQNESSIEIVADYNAQPPL 130 (191)
T ss_dssp -TTCSEEEECCCTT-----CCCBCHHHHHTCTTCCEEEECCCSSSC
T ss_pred -cCcCeeeecCccc-----cccCCHHHHHhhhcceeehhHhhHHHH
Confidence 4799999999973 235789999999999988877765443
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.71 E-value=1e-16 Score=146.87 Aligned_cols=183 Identities=15% Similarity=0.122 Sum_probs=129.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh----hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDF----LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~----~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
|+||||||+|.||.+++++|+++| +.|+++++.. ...... ..+ ...++.++.+|++|.++++.++...
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g-~~V~~~d~~~~~~~~~~~~~-~~~--~~~~v~~~~~Dl~d~~~l~~~~~~~---- 73 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENG-YDCVVADNLSNSTYDSVARL-EVL--TKHHIPFYEVDLCDRKGLEKVFKEY---- 73 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCTHHHHHH-HHH--HTSCCCEEECCTTCHHHHHHHHHHS----
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCc-CeEEEEECCCCcchhHHHhH-Hhh--cccCCeEEEeecCCHHHHHHHHhcc----
Confidence 689999999999999999999999 5888876521 111111 112 1346888999999999999988754
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
++|+|||+|+.... ....+.......+|+.|+.++.+++...-.+ ++|++||...+... ..
T Consensus 74 -~~d~VihlAa~~~~-----~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~------~~i~~SS~~vyg~~-~~------ 134 (347)
T d1z45a2 74 -KIDSVIHFAGLKAV-----GESTQIPLRYYHNNILGTVVLLELMQQYNVS------KFVFSSSATVYGDA-TR------ 134 (347)
T ss_dssp -CCCEEEECCSCCCH-----HHHHHSHHHHHHHHHHHHHHHHHHHHHHTCC------EEEEEEEGGGGCCG-GG------
T ss_pred -CCCEEEEccccccc-----cccccCcccccccchhhhHHHHHHHHhcccc------eEEeecceeeecCc-cc------
Confidence 69999999997532 1233445677889999999999998654322 89999998755211 00
Q ss_pred CccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCC
Q 018819 243 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~ 311 (350)
.....+..+..+..+...|+.||.+.+.+++.+.... ..++++..+.|+.+..+
T Consensus 135 -------------~~~~~~~~e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--~~~~~~~~lR~~~v~g~ 188 (347)
T d1z45a2 135 -------------FPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSD--KKSWKFAILRYFNPIGA 188 (347)
T ss_dssp -------------STTCCSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHS--TTSCEEEEEEECEEECC
T ss_pred -------------CCCCCccccccCCCCCChhHhHHHHHHHHHHHHHHhh--ccCCcEEEEeecceEee
Confidence 1111222333344456789999999999988887653 45888888887766543
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=8.4e-17 Score=146.95 Aligned_cols=180 Identities=14% Similarity=0.059 Sum_probs=130.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh---hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDF---LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~---~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.+|||||+|.||..+++.|+++| +.|++++|.. .......+.+. ..++.++++|++|.+.+.++++.. +
T Consensus 2 KiLItG~tGfIG~~l~~~L~~~g-~~V~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~l~~~~~~~-----~ 73 (338)
T d1udca_ 2 RVLVTGGSGYIGSHTCVQLLQNG-HDVIILDNLCNSKRSVLPVIERLG--GKHPTFVEGDIRNEALMTEILHDH-----A 73 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCTTHHHHHHHHH--TSCCEEEECCTTCHHHHHHHHHHT-----T
T ss_pred EEEEECCCCHHHHHHHHHHHHCc-CEEEEEECCCCcchhhHHHHHhhc--CCCCEEEEeecCCHHHHHHHHhcc-----C
Confidence 49999999999999999999999 5888887621 11111122222 347889999999999999888864 6
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
+|+|||+|+.... ..+.++.+..+++|+.|+.++++++...-. .++|++||.+.+.+....
T Consensus 74 ~d~ViHlAa~~~~-----~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v------~~~i~~Ss~~vy~~~~~~-------- 134 (338)
T d1udca_ 74 IDTVIHFAGLKAV-----GESVQKPLEYYDNNVNGTLRLISAMRAANV------KNFIFSSSATVYGDQPKI-------- 134 (338)
T ss_dssp CSEEEECCSCCCH-----HHHHHCHHHHHHHHHHHHHHHHHHHHHHTC------CEEEEEEEGGGGCSCCSS--------
T ss_pred CCEEEECCCccch-----hhHHhCHHHHHHhHHHHHHHHHHHHHHhCC------CEEEecCcceEEcccccc--------
Confidence 9999999986421 124455678999999999999999876532 289999987755321000
Q ss_pred cccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
....+.....+...|+.+|.+.+.+.+....++ .++.+..++|+.|.++.
T Consensus 135 ---------------~~~e~~~~~~p~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~ilR~~~v~G~~ 184 (338)
T d1udca_ 135 ---------------PYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQ---PDWSIALLRYFNPVGAH 184 (338)
T ss_dssp ---------------SBCTTSCCCCCSSHHHHHHHHHHHHHHHHHHHS---TTCEEEEEEECEEECCC
T ss_pred ---------------ccccccccCCCcchHHHHHhhhhHHHHHHHhhc---cCCeEEEEeeccEEecc
Confidence 000111123456789999999999888777664 37899999999888763
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.70 E-value=1.1e-16 Score=147.55 Aligned_cols=198 Identities=12% Similarity=0.130 Sum_probs=135.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHH-HHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKA-ERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~-~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
.||||||+|.||.+++++|++.|...|+.+++..... ......+ ....++.++.+|++|.+.+.++++.. .+|
T Consensus 2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~d~~~l~~~~~~~-----~~d 75 (361)
T d1kewa_ 2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDI-SESNRYNFEHADICDSAEITRIFEQY-----QPD 75 (361)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTT-TTCTTEEEEECCTTCHHHHHHHHHHH-----CCS
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHhh-hhcCCcEEEEccCCCHHHHHHHHHhC-----CCC
Confidence 5899999999999999999999964555555421110 0111111 12347899999999999999988865 699
Q ss_pred EEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCC---CCCeEEEEeccCCCCCCCCCCCCCCCC
Q 018819 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY---PSKRLIIVGSITGNTNTLAGNVPPKAN 243 (350)
Q Consensus 167 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~---~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (350)
+|||+|+.... ..+.++....+++|+.|+.++.+++......... ...+||++||...+-.... ...
T Consensus 76 ~VihlAa~~~~-----~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~-----~~~ 145 (361)
T d1kewa_ 76 AVMHLAAESHV-----DRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPH-----PDE 145 (361)
T ss_dssp EEEECCSCCCH-----HHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCC-----GGG
T ss_pred EEEECccccch-----hhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCcc-----CCc
Confidence 99999986432 1234556778999999999999998776432100 0138999999875521100 000
Q ss_pred ccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccc
Q 018819 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (350)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~ 314 (350)
. ..........+..+..+...|+.||.+.+.+++.++.++ |+.+.++.|+.|.+|...
T Consensus 146 ~---------~~~~~~~~~~e~~~~~p~s~Yg~sK~~~E~~~~~~~~~~----~i~~~~lR~~~vyGp~~~ 203 (361)
T d1kewa_ 146 V---------ENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTY----GLPTIVTNCSNNYGPYHF 203 (361)
T ss_dssp S---------CTTSCCCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECEEESTTCC
T ss_pred c---------ccccCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHh----CCCEEEEecCceECcCCC
Confidence 0 000011111223334566789999999999999988776 899999999999988653
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=1.3e-16 Score=145.74 Aligned_cols=184 Identities=13% Similarity=0.075 Sum_probs=132.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChh-----HHHHHHHHh-ccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFL-----KAERAAKSA-GMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~-----~~~~~~~~l-~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
|++|||||+|.||.+++++|.++| +.|+.++|... ..+...... .....++.++.+|++|.+.+.++++..
T Consensus 2 KI~LVTG~tGfIG~~l~~~Ll~~g-~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 78 (347)
T d1t2aa_ 2 NVALITGITGQDGSYLAEFLLEKG-YEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEV-- 78 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHH--
T ss_pred CEEEEecCCcHHHHHHHHHHHHCc-CEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhc--
Confidence 345999999999999999999999 59998888532 111111111 111246899999999999999998876
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
.+++++|+++.... ..+.+.....+++|+.|+.++.+++....... ..++|++||.+.+ |.
T Consensus 79 ---~~~~v~~~~a~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~---~~~~i~~SS~~vy-g~------- 139 (347)
T d1t2aa_ 79 ---KPTEIYNLGAQSHV-----KISFDLAEYTADVDGVGTLRLLDAVKTCGLIN---SVKFYQASTSELY-GK------- 139 (347)
T ss_dssp ---CCSEEEECCSCCCH-----HHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTT---TCEEEEEEEGGGT-CS-------
T ss_pred ---ccceeeeeeecccc-----chhhccchhhhhhHHHHHHHHHHHHHHcCCCC---CcEEEEecchhee-cC-------
Confidence 68899999886432 22345566778999999999999886653322 2389999987543 21
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
....++.|..+..+...|+.||.+.+.+++.+.+++ ++.+..+.|+.+..|.
T Consensus 140 ----------------~~~~~~~E~~~~~P~~~Yg~sK~~aE~~~~~~~~~~----~~~~~ilr~~~vyGp~ 191 (347)
T d1t2aa_ 140 ----------------VQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAY----NLFAVNGILFNHESPR 191 (347)
T ss_dssp ----------------CSSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECCEECTT
T ss_pred ----------------CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh----CCCEEEEEecceeCCC
Confidence 111233344455567789999999999999888776 8999999999888874
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.66 E-value=1.1e-15 Score=142.24 Aligned_cols=199 Identities=12% Similarity=0.081 Sum_probs=130.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh----------------hHHHHHHHHh-ccCCCceEEEEccCCCH
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDF----------------LKAERAAKSA-GMAKENYTIMHLDLASL 148 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~----------------~~~~~~~~~l-~~~~~~v~~~~~Dvs~~ 148 (350)
|+.||||||+|.||.+++++|+++| +.|+.++.-. ....+..... ...+.++.++.+|++|.
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g-~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~ 79 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKN-YEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDF 79 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCH
Confidence 5789999999999999999999999 5888875210 0011111111 11245789999999999
Q ss_pred HHHHHHHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccC
Q 018819 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (350)
Q Consensus 149 ~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~ 228 (350)
+.++++++.. ++|+|||.|+.... .....+.+.....+.+|+.|+.++++++...-.+ .++++.||..
T Consensus 80 ~~l~~~~~~~-----~~d~ViHlAa~~~~--~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~-----~~~i~~ss~~ 147 (393)
T d1i24a_ 80 EFLAESFKSF-----EPDSVVHFGEQRSA--PYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEE-----CHLVKLGTMG 147 (393)
T ss_dssp HHHHHHHHHH-----CCSEEEECCSCCCH--HHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTT-----CEEEEECCGG
T ss_pred HHHHHHHHhh-----cchheecccccccc--ccccccccccccccccccccccHHHHHHHHhccc-----cceeeccccc
Confidence 9999999876 79999999987432 1112355667788999999999999988754332 2566666654
Q ss_pred CCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcc
Q 018819 229 GNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI 308 (350)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v 308 (350)
..... .. ...+....... +.....+..+..+...|+.||.+.+.+++.+..++ ++++.++.|+.|
T Consensus 148 ~~~~~-~~-----~~~~~~~~~~~-----~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~----~l~~~~lR~~~v 212 (393)
T d1i24a_ 148 EYGTP-NI-----DIEEGYITITH-----NGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW----GIRATDLNQGVV 212 (393)
T ss_dssp GGCCC-SS-----CBCSSEEEEEE-----TTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECEE
T ss_pred ccccc-cc-----ccccccccccc-----cccccccccccccccHHHHHhhhhccccccccccc----ceeeeecccccc
Confidence 43211 00 00000000000 00000001122345679999999999998888776 899999999999
Q ss_pred cCCc
Q 018819 309 ATTG 312 (350)
Q Consensus 309 ~t~~ 312 (350)
..+.
T Consensus 213 ~G~~ 216 (393)
T d1i24a_ 213 YGVK 216 (393)
T ss_dssp ECSC
T ss_pred cCCC
Confidence 8874
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.66 E-value=4.8e-16 Score=140.45 Aligned_cols=182 Identities=15% Similarity=0.046 Sum_probs=130.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHH-HHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKA-ERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~-~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
|+||||||+|.||++++++|.++| +.|+.++|..... ....+.+. ...++.++.+|++|.+.+.+++... ..
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g-~~V~~~~r~~~~~~~~~l~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~-----~~ 73 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKG-YRVHGLVARRSSDTRWRLRELG-IEGDIQYEDGDMADACSVQRAVIKA-----QP 73 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCHHHHHTT-CGGGEEEEECCTTCHHHHHHHHHHH-----CC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc-CEEEEEECCCCcccHHHHHHhc-ccCCcEEEEccccChHHhhhhhccc-----cc
Confidence 689999999999999999999999 6999988853221 11122222 2246899999999999999888875 67
Q ss_pred cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcc
Q 018819 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (350)
++++|+|+..... ...+.....+.+|+.|+.++++++...-.+ .+|++.||.. ..+..
T Consensus 74 ~~~~~~a~~~~~~-----~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~-----~~~i~~Ss~~-~~~~~----------- 131 (321)
T d1rpna_ 74 QEVYNLAAQSFVG-----ASWNQPVTTGVVDGLGVTHLLEAIRQFSPE-----TRFYQASTSE-MFGLI----------- 131 (321)
T ss_dssp SEEEECCSCCCHH-----HHTTSHHHHHHHHTHHHHHHHHHHHHHCTT-----SEEEEEEEGG-GGCSC-----------
T ss_pred ccccccccccccc-----ccccchHHHHhhhhhchHHHHHHHHHhCCC-----cccccccchh-hcCcc-----------
Confidence 8888888764321 122345678899999999999988654332 2566666644 33211
Q ss_pred ccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
......|..+......|+.+|.+.+.+++.++.++ ++++.++.|+.+..|..
T Consensus 132 ------------~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~~~~~~lr~~~vyGp~~ 183 (321)
T d1rpna_ 132 ------------QAERQDENTPFYPRSPYGVAKLYGHWITVNYRESF----GLHASSGILFNHESPLR 183 (321)
T ss_dssp ------------SSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECCEECTTS
T ss_pred ------------cCCCCCCCCCccccChhHHHHHHHHHHHHHHHhhc----CCcEEEEEEecccCCCc
Confidence 11122233445567889999999999998888776 89999999988887743
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.65 E-value=1e-15 Score=139.31 Aligned_cols=186 Identities=15% Similarity=0.097 Sum_probs=131.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChh-----HHHHHHHHhc-cCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFL-----KAERAAKSAG-MAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~-----~~~~~~~~l~-~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
|++|||||+|.||.++++.|+++| +.|+.++|... +......... .....+.++.+|+++.+++.+.++..
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~-- 78 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKG-YEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVI-- 78 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHH--
T ss_pred CEEEEeCCccHHHHHHHHHHHHCc-CEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhh--
Confidence 799999999999999999999999 69999988421 1111111111 11246789999999999999988865
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
++|+|||+|+.... ..+.++....+..|+.++.++..++.....+... ..++++.||.... +.
T Consensus 79 ---~~D~Vih~Aa~~~~-----~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~~~~~~ss~~~~-~~------- 141 (339)
T d1n7ha_ 79 ---KPDEVYNLAAQSHV-----AVSFEIPDYTADVVATGALRLLEAVRSHTIDSGR-TVKYYQAGSSEMF-GS------- 141 (339)
T ss_dssp ---CCSEEEECCSCCCH-----HHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCC-CCEEEEEEEGGGG-TT-------
T ss_pred ---ccchhhhccccccc-----cccccCccccccccccccchhhhhhhhccccccc-ceeeeecccceec-cc-------
Confidence 79999999997532 1234566788999999999999888765433221 1245555544322 11
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
...+..|..+..+...|+.+|.+.+.++..+.+++ ++++.++.|+.|.+|..
T Consensus 142 -----------------~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~~~~~ilR~~~vyGp~~ 193 (339)
T d1n7ha_ 142 -----------------TPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAY----GLFACNGILFNHESPRR 193 (339)
T ss_dssp -----------------SCSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECCEECTTS
T ss_pred -----------------CCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHh----CCCEEEEEEccccCCCC
Confidence 11122334445667899999999999998888776 89999999999988753
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=1.3e-15 Score=137.15 Aligned_cols=168 Identities=16% Similarity=0.145 Sum_probs=121.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
|.||||||+|.||.+++++|+++| +.++++++.. .+|+.|.+.+.++++.- .+|
T Consensus 3 kkIlITG~tGfiG~~l~~~L~~~g-~~vi~~~~~~--------------------~~~~~~~~~~~~~~~~~-----~~d 56 (315)
T d1e6ua_ 3 QRVFIAGHRGMVGSAIRRQLEQRG-DVELVLRTRD--------------------ELNLLDSRAVHDFFASE-----RID 56 (315)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCT-TEEEECCCTT--------------------TCCTTCHHHHHHHHHHH-----CCS
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCc-CEEEEecCch--------------------hccccCHHHHHHHHhhc-----CCC
Confidence 579999999999999999999999 4666654321 26999999999887743 699
Q ss_pred EEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCccc
Q 018819 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 246 (350)
Q Consensus 167 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~ 246 (350)
.++|+|+..... ..........+++|+.|+.++++++...-. .++|++||.+.+.+. .. .
T Consensus 57 ~v~~~a~~~~~~----~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v------~~~i~~SS~~vyg~~-~~----~----- 116 (315)
T d1e6ua_ 57 QVYLAAAKVGGI----VANNTYPADFIYQNMMIESNIIHAAHQNDV------NKLLFLGSSCIYPKL-AK----Q----- 116 (315)
T ss_dssp EEEECCCCCCCH----HHHHHCHHHHHHHHHHHHHHHHHHHHHTTC------CEEEEECCGGGSCTT-CC----S-----
T ss_pred EEEEcchhcccc----ccchhhHHHHHHHHHHHHHHHHHHHHHcCC------CEEEEECCceEcCCC-CC----C-----
Confidence 999999764321 123344566788999999999998765422 289999998765321 00 0
Q ss_pred cccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 247 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
..+.....+..+.+....|+.||.+.+.+++.+.++. |+++..+.|+.|.+|..
T Consensus 117 ---------~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----gl~~~ilR~~~vyGp~~ 170 (315)
T d1e6ua_ 117 ---------PMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQY----GRDYRSVMPTNLYGPHD 170 (315)
T ss_dssp ---------SBCGGGTTSSCCCGGGHHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECEEESTTC
T ss_pred ---------CccCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHh----CCCEEEEeeccEECCCC
Confidence 0011111122233456789999999999999998876 89999999999988753
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.64 E-value=2e-15 Score=137.67 Aligned_cols=182 Identities=14% Similarity=0.068 Sum_probs=132.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC----hhHHHHHHHHhc-cCCCceEEEEccCCCHHHHHHHHHHHH
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRD----FLKAERAAKSAG-MAKENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~----~~~~~~~~~~l~-~~~~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
.-|++|||||+|.||.+++++|.++| +.|+.++|. ............ ....++.++.+|..|.........
T Consensus 15 ~~k~iLVTG~tGfIGs~lv~~L~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~--- 90 (341)
T d1sb8a_ 15 QPKVWLITGVAGFIGSNLLETLLKLD-QKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACA--- 90 (341)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHT---
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCc-CEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccc---
Confidence 45799999999999999999999999 589888762 222222222211 112468899999999887654433
Q ss_pred HcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCC
Q 018819 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 239 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~ 239 (350)
..+.++|.++.... ..+.++....+++|+.|+.++.+++...- ..+||++||...+...
T Consensus 91 ----~~~~v~~~~a~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~------~~~~i~~SS~~vyg~~------ 149 (341)
T d1sb8a_ 91 ----GVDYVLHQAALGSV-----PRSINDPITSNATNIDGFLNMLIAARDAK------VQSFTYAASSSTYGDH------ 149 (341)
T ss_dssp ----TCSEEEECCSCCCH-----HHHHHCHHHHHHHHTHHHHHHHHHHHHTT------CSEEEEEEEGGGGTTC------
T ss_pred ----cccccccccccccc-----cccccCccchhheeehhHHHHHHHHHhcC------CceEEEcccceeeCCC------
Confidence 67888888876432 12466778899999999999999886542 1389999998764211
Q ss_pred CCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 240 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
...+..|..+..+...|+.+|.+.+.+++.+++.. ++++..+.|+.|.++..
T Consensus 150 ------------------~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~i~~~ilR~~~v~G~~~ 201 (341)
T d1sb8a_ 150 ------------------PGLPKVEDTIGKPLSPYAVTKYVNELYADVFSRCY----GFSTIGLRYFNVFGRRQ 201 (341)
T ss_dssp ------------------CCSSBCTTCCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCCEEEEECCEECTTC
T ss_pred ------------------CCCCccCCCCCCCCCcchHHHHHHHHHHHHHHHHh----CCCeEEEEeceeeccCc
Confidence 11223344455567899999999999999888776 89999999999887653
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=99.63 E-value=4.3e-16 Score=142.44 Aligned_cols=200 Identities=14% Similarity=0.087 Sum_probs=133.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHh--ccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA--GMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l--~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
+||+||||||+|.||.+++++|.++| +.|+.+.|+..+........ .........+..|++|.+++..++.
T Consensus 10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G-~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 82 (342)
T d1y1pa1 10 EGSLVLVTGANGFVASHVVEQLLEHG-YKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIK------ 82 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTT------
T ss_pred CcCEEEEECCCCHHHHHHHHHHHHCc-CEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcc------
Confidence 58999999999999999999999999 59999999876655443322 1223345567789999987766553
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCC
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 242 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~ 242 (350)
.+|.++|+++.... ..+ ....+.+|+.|+.++++.+.... . -.+||++||..+..+..+.......
T Consensus 83 -~~~~v~~~a~~~~~-----~~~---~~~~~~~nv~gt~~ll~~~~~~~---~--v~~~i~~SS~~~~~~~~~~~~~~~~ 148 (342)
T d1y1pa1 83 -GAAGVAHIASVVSF-----SNK---YDEVVTPAIGGTLNALRAAAATP---S--VKRFVLTSSTVSALIPKPNVEGIYL 148 (342)
T ss_dssp -TCSEEEECCCCCSC-----CSC---HHHHHHHHHHHHHHHHHHHHTCT---T--CCEEEEECCGGGTCCCCTTCCCCEE
T ss_pred -cchhhhhhcccccc-----ccc---ccccccchhhhHHHHHHhhhccc---c--cccccccccceeeccCCCCCCCccc
Confidence 68999999987432 122 34567789999999998875431 1 2489999998765432111100000
Q ss_pred Cccc--cccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 243 NLGD--LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 243 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
+... ...+. ......+..+......|+.||.+.+.+++.+++++ ..++++.+++|+.+..|..
T Consensus 149 ~e~~~~~~~~~------~~~~~~e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--~~~~~~~~i~p~~v~Gp~~ 213 (342)
T d1y1pa1 149 DEKSWNLESID------KAKTLPESDPQKSLWVYAASKTEAELAAWKFMDEN--KPHFTLNAVLPNYTIGTIF 213 (342)
T ss_dssp CTTCCCHHHHH------HHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHH--CCSSEEEEEEESEEECCCS
T ss_pred ccccccccccc------ccccccccCCCCCcCcccchhHhHHHHHHHhhhhc--ccccccceecccceeCCCC
Confidence 0000 00000 00011222334466789999999999999988876 3478999999998877643
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=99.62 E-value=3.9e-15 Score=136.22 Aligned_cols=190 Identities=16% Similarity=0.122 Sum_probs=136.3
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
.+||+||||||+|.||.++++.|.++| +.|+.++|+........+... ....+.++.+|++|++.+.++++..
T Consensus 6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g-~~V~~~~r~~~~~~~~~~~~~-~~~~i~~~~~Dl~d~~~l~~~~~~~----- 78 (356)
T d1rkxa_ 6 WQGKRVFVTGHTGFKGGWLSLWLQTMG-ATVKGYSLTAPTVPSLFETAR-VADGMQSEIGDIRDQNKLLESIREF----- 78 (356)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCSSSSCHHHHTT-TTTTSEEEECCTTCHHHHHHHHHHH-----
T ss_pred hCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCCccHHHHhhhh-cccCCeEEEeeccChHhhhhhhhhc-----
Confidence 589999999999999999999999999 589999997654433333332 2236889999999999999988876
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCC
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (350)
.+|+++|+|+.... ..+.+..+..+++|+.|+.++++++...-.. ..+++.||.....+.
T Consensus 79 ~~~~v~~~aa~~~~-----~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~-----~~~~~~s~~~~~~~~---------- 138 (356)
T d1rkxa_ 79 QPEIVFHMAAQPLV-----RLSYSEPVETYSTNVMGTVYLLEAIRHVGGV-----KAVVNITSDKCYDNK---------- 138 (356)
T ss_dssp CCSEEEECCSCCCH-----HHHHHCHHHHHHHHTHHHHHHHHHHHHHCCC-----CEEEEECCGGGBCCC----------
T ss_pred hhhhhhhhhccccc-----cccccCCccccccccccchhhhhhhhccccc-----ccccccccccccccc----------
Confidence 79999999986432 2345667788999999999999988653221 244444443322110
Q ss_pred ccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcC-----CCCcEEEEeeCCcccCCcc
Q 018819 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE-----ETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~-----~~gi~v~~v~PG~v~t~~~ 313 (350)
....+..+..+..+...|+.+|...+.+.+.++.++.. ..++.+..+.|+.+..|..
T Consensus 139 -------------~~~~~~~~~~~~~p~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~ 200 (356)
T d1rkxa_ 139 -------------EWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGD 200 (356)
T ss_dssp -------------CSSSCBCTTSCBCCSSHHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTC
T ss_pred -------------ccccccccccccCCCCccccccccchhhhhHHhhhcccchhccccCceEEeccCCCeeCCCc
Confidence 01112222233455678999999999888888876532 3478899999998887653
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=99.59 E-value=2.5e-14 Score=129.42 Aligned_cols=191 Identities=16% Similarity=0.080 Sum_probs=123.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC--hhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRD--FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~--~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
.||||||+|.||.++++.|.++| +.|+.+++- ...... ...+.. ..++.++.+|++|.+++.++++.. ++
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g-~~V~~id~~~~~~~~~~-~~~~~~-~~~~~~i~~Di~~~~~l~~~~~~~-----~~ 73 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQG-IDLIVFDNLSRKGATDN-LHWLSS-LGNFEFVHGDIRNKNDVTRLITKY-----MP 73 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSTTHHHH-HHHHHT-TCCCEEEECCTTCHHHHHHHHHHH-----CC
T ss_pred EEEEECCCcHHHHHHHHHHHHCc-CEEEEEECCCcccchhH-HHHhhc-cCCcEEEEcccCCHHHHHHHHHhc-----CC
Confidence 58999999999999999999999 588887642 122222 222221 246889999999999999998876 69
Q ss_pred cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcc
Q 018819 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (350)
|+|||+|+.... ....++....+++|+.|+.++++++...-. .++|++||.....+...... .....
T Consensus 74 d~Vih~aa~~~~-----~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~------~~~i~~sS~~~~~~~~~~~~--~~~~~ 140 (338)
T d1orra_ 74 DSCFHLAGQVAM-----TTSIDNPCMDFEINVGGTLNLLEAVRQYNS------NCNIIYSSTNKVYGDLEQYK--YNETE 140 (338)
T ss_dssp SEEEECCCCCCH-----HHHHHCHHHHHHHHHHHHHHHHHHHHHHCT------TCEEEEEEEGGGGTTCTTSC--EEECS
T ss_pred ceEEeecccccc-----cccccChHHHHHHHHHHHHHHHHhhhcccc------cccccccccccccccccccc--ccccc
Confidence 999999987532 123445678899999999999998765432 25666666655443211100 00000
Q ss_pred ccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcc
Q 018819 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI 308 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v 308 (350)
... .............+..+...|+.+|...+.+.......+ ++....+.|..+
T Consensus 141 ~~~-----~~~~~~~~~~~~~~~~~~~~y~~~k~~~e~~~~~~~~~~----~~~~~~~~~~~~ 194 (338)
T d1orra_ 141 TRY-----TCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIF----GLNTVVFRHSSM 194 (338)
T ss_dssp SCE-----EETTCTTCBCTTSCCCCCHHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECCE
T ss_pred ccc-----cccccccCcccCCccccccccccccchhhhhhhhhhhcc----Ccccccccccce
Confidence 000 000111122223345567899999999999888888776 455555544433
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=9.7e-15 Score=131.59 Aligned_cols=178 Identities=12% Similarity=0.087 Sum_probs=119.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh-hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDF-LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~-~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
|.||||||+|.||.+++++|.++| +.|+.+++.. ...+... .. ....++.....|+.+. .+..+
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g-~~V~~~d~~~~~~~~~~~-~~-~~~~~~d~~~~~~~~~------------~~~~~ 66 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDG-HEVTVVDNFFTGRKRNVE-HW-IGHENFELINHDVVEP------------LYIEV 66 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCGGGTG-GG-TTCTTEEEEECCTTSC------------CCCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeCCCcCCHHHHH-Hh-cCCCceEEEehHHHHH------------HHcCC
Confidence 689999999999999999999999 5888887632 1111111 11 1122455555565432 12369
Q ss_pred cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcc
Q 018819 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (350)
|+|||+|+..... ...++....+++|+.|+.++++++... +.++|++||.+.+... ..
T Consensus 67 d~VihlAa~~~~~-----~~~~~~~~~~~~Nv~g~~~ll~~~~~~-------~~k~I~~SS~~vy~~~-~~--------- 124 (312)
T d2b69a1 67 DQIYHLASPASPP-----NYMYNPIKTLKTNTIGTLNMLGLAKRV-------GARLLLASTSEVYGDP-EV--------- 124 (312)
T ss_dssp SEEEECCSCCSHH-----HHTTCHHHHHHHHHHHHHHHHHHHHHH-------TCEEEEEEEGGGGBSC-SS---------
T ss_pred CEEEECcccCCch-----hHHhCHHHHHHHHHHHHHHHHHHHHHc-------CCcEEEEEChheecCC-CC---------
Confidence 9999999875321 112345678899999999999987543 1389999997654211 00
Q ss_pred ccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCccc
Q 018819 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 314 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~~ 314 (350)
...+.....+..+..+...|+.||.+.+.+++.+++++ |+++.+++|+.|.+|...
T Consensus 125 ---------~~~~e~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~~~~~~lR~~~vyGp~~~ 180 (312)
T d2b69a1 125 ---------HPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQE----GVEVRVARIFNTFGPRMH 180 (312)
T ss_dssp ---------SSBCTTCCCBCCSSSTTHHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECCEECTTCC
T ss_pred ---------CCCCccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHh----CCcEEEEEeeeEECCCCC
Confidence 00011111222344567889999999999999888886 899999999999988653
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=99.57 E-value=9.2e-15 Score=132.22 Aligned_cols=178 Identities=17% Similarity=0.127 Sum_probs=126.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC-----cEEEEEecCh--hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 88 SVIITGASSGLGLATAKALAETGK-----WHIIMACRDF--LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga-----~~Vi~~~r~~--~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
.||||||+|.||.++++.|+++|. .+++..+... ...... ..+ ....++.++.+|.++........
T Consensus 2 kIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~-~~~-~~~~~~~~~~~d~~~~~~~~~~~----- 74 (322)
T d1r6da_ 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANL-APV-DADPRLRFVHGDIRDAGLLAREL----- 74 (322)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGG-GGG-TTCTTEEEEECCTTCHHHHHHHT-----
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHh-hhh-hcCCCeEEEEeccccchhhhccc-----
Confidence 589999999999999999999983 1344443211 110111 111 22357899999999988766443
Q ss_pred cCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCC
Q 018819 161 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 240 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~ 240 (350)
..+|.++|+|+.... ....+.....+++|+.|++++++++...- ..+||++||.+.+...
T Consensus 75 --~~~d~vi~~a~~~~~-----~~~~~~~~~~~~~N~~gt~~ll~~~~~~~------~~~~I~~Ss~~~yg~~------- 134 (322)
T d1r6da_ 75 --RGVDAIVHFAAESHV-----DRSIAGASVFTETNVQGTQTLLQCAVDAG------VGRVVHVSTNQVYGSI------- 134 (322)
T ss_dssp --TTCCEEEECCSCCCH-----HHHHHCCHHHHHHHTHHHHHHHHHHHHTT------CCEEEEEEEGGGGCCC-------
T ss_pred --cccceEEeecccccc-----cccccchHHHhhhhHHHHHHHHHHHHHcC------CceEEEeecceeecCC-------
Confidence 278999999987432 22445567788999999999999886432 1389999998765321
Q ss_pred CCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 241 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
...++.|..+..+...|+.+|.+.+.+++.+++++ |+++.++.|+.|.+|..
T Consensus 135 -----------------~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~~~~~~lR~~~vyGp~~ 186 (322)
T d1r6da_ 135 -----------------DSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTY----GLDVRITRCCNNYGPYQ 186 (322)
T ss_dssp -----------------SSSCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECEEECTTC
T ss_pred -----------------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh----CCCEEEEEeeeEECcCC
Confidence 11223344455566789999999999999998876 89999999999998754
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.57 E-value=3.8e-14 Score=131.19 Aligned_cols=190 Identities=15% Similarity=0.113 Sum_probs=130.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHH-cCCcEEEEEec---------ChhHHHHH---HHHhc-----cCCCceEEEEccCCCH
Q 018819 87 GSVIITGASSGLGLATAKALAE-TGKWHIIMACR---------DFLKAERA---AKSAG-----MAKENYTIMHLDLASL 148 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~-~Ga~~Vi~~~r---------~~~~~~~~---~~~l~-----~~~~~v~~~~~Dvs~~ 148 (350)
..||||||+|.||.+++++|++ .| +.|+++++ ..+..+.. .+... .....+.++.+|++|.
T Consensus 3 MKVLITG~tGfIGs~lv~~LL~~~~-~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~ 81 (383)
T d1gy8a_ 3 MRVLVCGGAGYIGSHFVRALLRDTN-HSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE 81 (383)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCC-CEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHhCC-CEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccCH
Confidence 4699999999999999999986 56 68888763 11111222 22111 1234578899999999
Q ss_pred HHHHHHHHHHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccC
Q 018819 149 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 228 (350)
Q Consensus 149 ~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~ 228 (350)
+.++++++.. .++|+|||+|+.... ....+.....+++|+.++.++++++..... .++++++|..
T Consensus 82 ~~l~~~~~~~----~~~d~ViH~Aa~~~~-----~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~------~~~~~~~s~~ 146 (383)
T d1gy8a_ 82 DFLNGVFTRH----GPIDAVVHMCAFLAV-----GESVRDPLKYYDNNVVGILRLLQAMLLHKC------DKIIFSSSAA 146 (383)
T ss_dssp HHHHHHHHHS----CCCCEEEECCCCCCH-----HHHHHCHHHHHHHHHHHHHHHHHHHHHTTC------CEEEEEEEGG
T ss_pred HHhhhhhhcc----ceeehhhcccccccc-----cccccccccccccccccccccchhhhccCC------cccccccccc
Confidence 9988888653 579999999997532 123445567788999999999988764322 2777777766
Q ss_pred CCCCCCCCCCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcc
Q 018819 229 GNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI 308 (350)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v 308 (350)
......... ......+..+..+..+...|+.+|.+.+.+++.+...+ |+.+.++.|+.+
T Consensus 147 ~~~~~~~~~-----------------~~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~----gl~~~~lR~~~v 205 (383)
T d1gy8a_ 147 IFGNPTMGS-----------------VSTNAEPIDINAKKSPESPYGESKLIAERMIRDCAEAY----GIKGICLRYFNA 205 (383)
T ss_dssp GTBSCCC----------------------CCCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECEE
T ss_pred ccccccccc-----------------ccccccccccccCCCCCCHHHhhHhHHHHHHHHHHHHh----CCCEEEEeccee
Confidence 543211000 00111223333445567889999999999999888776 899999999999
Q ss_pred cCCcc
Q 018819 309 ATTGL 313 (350)
Q Consensus 309 ~t~~~ 313 (350)
.+|..
T Consensus 206 yG~~~ 210 (383)
T d1gy8a_ 206 CGAHE 210 (383)
T ss_dssp ECCCT
T ss_pred eccCc
Confidence 88754
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=2.1e-14 Score=130.81 Aligned_cols=181 Identities=13% Similarity=0.052 Sum_probs=125.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
.||||||+|.||.+++++|+++|...|+.+++......... ...++.++.+|+++.+++.+.+.. .+|+
T Consensus 2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~-----~~~~~~~i~~Di~~~~~~~~~~~~------~~d~ 70 (342)
T d2blla1 2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL-----NHPHFHFVEGDISIHSEWIEYHVK------KCDV 70 (342)
T ss_dssp EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGT-----TCTTEEEEECCTTTCSHHHHHHHH------HCSE
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhc-----cCCCeEEEECccCChHHHHHHHHh------CCCc
Confidence 58999999999999999999999557888877543322221 134789999999987766553321 4899
Q ss_pred EEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcccc
Q 018819 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (350)
Q Consensus 168 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (350)
|||+|+.... ....++....+.+|+.|+.++++++... +-+++++||.....+.....
T Consensus 71 Vih~a~~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~~~~~-------~~~~~~~ss~~~~~~~~~~~---------- 128 (342)
T d2blla1 71 VLPLVAIATP-----IEYTRNPLRVFELDFEENLRIIRYCVKY-------RKRIIFPSTSEVYGMCSDKY---------- 128 (342)
T ss_dssp EEECBCCCCH-----HHHHHSHHHHHHHHTHHHHHHHHHHHHT-------TCEEEEECCGGGGBTCCCSS----------
T ss_pred cccccccccc-----cccccCCccccccccccccccccccccc-------cccccccccccccccccccc----------
Confidence 9999997532 1233445678999999999999997543 12677777766543210000
Q ss_pred ccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
.........+.....+...|+.||.+.+.+++.+++++ |+++..+.|..+..+.
T Consensus 129 -------~~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~~~~~i~r~~~~~g~~ 182 (342)
T d2blla1 129 -------FDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE----GLQFTLFRPFNWMGPR 182 (342)
T ss_dssp -------BCTTTCCCBCCCTTCGGGHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECSEECSS
T ss_pred -------cccccccccccccCCCcchhhhcccchhhhhhhhhccc----CceeEEeecccccccc
Confidence 00000111111223456789999999999999888876 8999999998888764
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=8e-14 Score=117.74 Aligned_cols=155 Identities=14% Similarity=0.127 Sum_probs=105.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
..|.++||||+|+||.+++++|+++| +.|.++.|+..+... .....+.++.+|++|.+++.++++ +
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g-~~V~~~~R~~~~~~~------~~~~~~~~~~gD~~d~~~l~~al~-------~ 67 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAG-YEVTVLVRDSSRLPS------EGPRPAHVVVGDVLQAADVDKTVA-------G 67 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCGGGSCS------SSCCCSEEEESCTTSHHHHHHHHT-------T
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCc-CEEEEEEcChhhccc------ccccccccccccccchhhHHHHhc-------C
Confidence 45689999999999999999999999 699999998765321 112457889999999999887765 5
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
.|++||++|...+.. . .+++..++.++++++. +.+ -.++|++||.......
T Consensus 68 ~d~vi~~~g~~~~~~---~---------~~~~~~~~~~l~~aa~----~~~--v~r~i~~ss~~~~~~~----------- 118 (205)
T d1hdoa_ 68 QDAVIVLLGTRNDLS---P---------TTVMSEGARNIVAAMK----AHG--VDKVVACTSAFLLWDP----------- 118 (205)
T ss_dssp CSEEEECCCCTTCCS---C---------CCHHHHHHHHHHHHHH----HHT--CCEEEEECCGGGTSCT-----------
T ss_pred CCEEEEEeccCCchh---h---------hhhhHHHHHHHHHHHH----hcC--CCeEEEEeeeeccCCC-----------
Confidence 899999998743211 1 1234455556665543 332 2489999986543210
Q ss_pred cccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccC
Q 018819 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIAT 310 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t 310 (350)
....+....|...|...+.+. +..|++...|.||.+..
T Consensus 119 --------------------~~~~~~~~~~~~~~~~~e~~l--------~~~~~~~tiirp~~~~~ 156 (205)
T d1hdoa_ 119 --------------------TKVPPRLQAVTDDHIRMHKVL--------RESGLKYVAVMPPHIGD 156 (205)
T ss_dssp --------------------TCSCGGGHHHHHHHHHHHHHH--------HHTCSEEEEECCSEEEC
T ss_pred --------------------ccccccccccchHHHHHHHHH--------HhcCCceEEEecceecC
Confidence 001123345666666544322 23489999999998854
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.56 E-value=2e-14 Score=131.98 Aligned_cols=183 Identities=15% Similarity=0.017 Sum_probs=127.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+++.||||||+|.||.+++++|.++| +.|+.+++..... ....-....+..+|+.+.+.+..+++ .
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g-~~V~~~d~~~~~~------~~~~~~~~~~~~~D~~~~~~~~~~~~-------~ 79 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEG-HYVIASDWKKNEH------MTEDMFCDEFHLVDLRVMENCLKVTE-------G 79 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCSS------SCGGGTCSEEEECCTTSHHHHHHHHT-------T
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCc-CEEEEEeCCCccc------hhhhcccCcEEEeechhHHHHHHHhh-------c
Confidence 67789999999999999999999999 6888887643210 00011245678899999888766553 6
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
+|.+||+|+..... ..+.+.....+.+|+.++.+++.++...-. .++|++||........ ....
T Consensus 80 ~d~Vih~a~~~~~~----~~~~~~~~~~~~~n~~gt~~ll~~~~~~~v------k~~i~~SS~~~~~~~~-~~~~----- 143 (363)
T d2c5aa1 80 VDHVFNLAADMGGM----GFIQSNHSVIMYNNTMISFNMIEAARINGI------KRFFYASSACIYPEFK-QLET----- 143 (363)
T ss_dssp CSEEEECCCCCCCH----HHHTTCHHHHHHHHHHHHHHHHHHHHHTTC------SEEEEEEEGGGSCGGG-SSSS-----
T ss_pred CCeEeecccccccc----cccccccccccccccchhhHHHHhHHhhCc------cccccccccccccccc-cccc-----
Confidence 89999999875321 112344677888999999999998765432 3899999976553210 0000
Q ss_pred cccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
........+..+..+...|+.||.+.+.+++.+.+++ |+++..+.|+.+.++.
T Consensus 144 -----------~~~~~~~~e~~~~~p~~~Yg~sK~~~E~~~~~~~~~~----gl~~~ilR~~~vyG~~ 196 (363)
T d2c5aa1 144 -----------TNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDF----GIECRIGRFHNIYGPF 196 (363)
T ss_dssp -----------SSCEECGGGGSSBCCSSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECCEECTT
T ss_pred -----------cccccccccCCcCCCCCHHHHHHHHHHHHHHHHHHHh----CCCEEEEEeeeEeccC
Confidence 0000011112233456789999999999998888776 8999999999998864
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.55 E-value=3.1e-14 Score=129.99 Aligned_cols=189 Identities=14% Similarity=0.122 Sum_probs=125.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh---hHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDF---LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~---~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
|.||||||+|.||.+++++|.++|. .|.++.++. ......... ..+.++.++.+|++|.+.+..++.
T Consensus 3 mkILVTGgtGfIGs~lv~~L~~~g~-~v~v~~~d~~~~~~~~~~~~~--~~~~~i~~~~~Di~d~~~~~~~~~------- 72 (346)
T d1oc2a_ 3 KNIIVTGGAGFIGSNFVHYVYNNHP-DVHVTVLDKLTYAGNKANLEA--ILGDRVELVVGDIADAELVDKLAA------- 72 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHHCT-TCEEEEEECCCTTCCGGGTGG--GCSSSEEEEECCTTCHHHHHHHHT-------
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-CeEEEEEeCCCccccHHHHHH--hhcCCeEEEEccCCCHHHHHHHHh-------
Confidence 5799999999999999999999994 433333321 000000011 124578999999999999888754
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCC
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 243 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~ 243 (350)
..|.++|.|+.... ....++....+++|+.|+.+++..+...- .++|++||.+.+ +..+ ...+
T Consensus 73 ~~~~v~~~a~~~~~-----~~~~~~~~~~~~~N~~g~~nll~~~~~~~-------~k~i~~ss~~vy-g~~~----~~~~ 135 (346)
T d1oc2a_ 73 KADAIVHYAAESHN-----DNSLNDPSPFIHTNFIGTYTLLEAARKYD-------IRFHHVSTDEVY-GDLP----LRED 135 (346)
T ss_dssp TCSEEEECCSCCCH-----HHHHHCCHHHHHHHTHHHHHHHHHHHHHT-------CEEEEEEEGGGG-CCBC----CGGG
T ss_pred hhhhhhhhhhcccc-----cchhhCcccceeeehHhHHhhhhhhcccc-------ccccccccceEe-cccC----cccc
Confidence 57889999987532 11234456788999999999998875442 278888877644 2110 0000
Q ss_pred ccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 244 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
... ..........+..+..+...|+.+|.+.+.+++.+.+++ |+++.++.|+.|.+|..
T Consensus 136 ~~~-------~~~~~~~~~~e~~~~~p~s~Y~~sK~~~E~~~~~~~~~~----~i~~~ilR~~~vyGp~~ 194 (346)
T d1oc2a_ 136 LPG-------HGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSF----GVKATISNCSNNYGPYQ 194 (346)
T ss_dssp STT-------TTCSTTSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECCEESTTC
T ss_pred ccc-------cccCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHc----CCCEEEEeecceeCCCC
Confidence 000 000011122233344556789999999999999888776 89999999999988743
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=3.1e-14 Score=129.91 Aligned_cols=179 Identities=13% Similarity=0.044 Sum_probs=125.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEec------C----hhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHH
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACR------D----FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVD 156 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r------~----~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~ 156 (350)
|.||||||+|.||.+++++|+++| +.|+.+++ . ....+. .+.+ ...++.++.+|++|.+.+++++.
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g-~~V~~ld~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~Dl~d~~~l~~~~~ 78 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAG-YLPVVIDNFHNAFRGGGSLPESLRR-VQEL--TGRSVEFEEMDILDQGALQRLFK 78 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTT-CCEEEEECSSSSCBCSSSSBHHHHH-HHHH--HTCCCEEEECCTTCHHHHHHHHH
T ss_pred CeEEEECCCcHHHHHHHHHHHHCc-CEEEEEECCCccccccccchHHHHH-HHHh--cCCCcEEEEeecccccccccccc
Confidence 578999999999999999999999 58887753 1 122222 2222 23578999999999999988876
Q ss_pred HHHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCC
Q 018819 157 TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 236 (350)
Q Consensus 157 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~ 236 (350)
.. .++.++|+|+.... ..+.++....+++|+.|+.++.+++...-. .+||++||..........
T Consensus 79 ~~-----~~~~i~h~Aa~~~~-----~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v------~~~i~~ss~~~~~~~~~~ 142 (346)
T d1ek6a_ 79 KY-----SFMAVIHFAGLKAV-----GESVQKPLDYYRVNLTGTIQLLEIMKAHGV------KNLVFSSSATVYGNPQYL 142 (346)
T ss_dssp HC-----CEEEEEECCSCCCH-----HHHHHCHHHHHHHHHHHHHHHHHHHHHTTC------CEEEEEEEGGGGCSCSSS
T ss_pred cc-----ccccccccccccCc-----HhhHhCHHHHHHhhhcccccccchhhhcCc------ccccccccceeeeccccc
Confidence 53 68899999997532 223455677899999999999988754322 379998887655321000
Q ss_pred CCCCCCCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCC
Q 018819 237 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 311 (350)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~ 311 (350)
....+.........|+.+|...+...+.+++.. .++....+.|+.+.++
T Consensus 143 -----------------------~~~~~~~~~~~~~~Y~~~k~~~e~~~~~~~~~~---~~~~~~~lR~~~v~G~ 191 (346)
T d1ek6a_ 143 -----------------------PLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQAD---KTWNAVLLRYFNPTGA 191 (346)
T ss_dssp -----------------------SBCTTSCCCCCSSHHHHHHHHHHHHHHHHHHHC---TTCEEEEEEECEEECC
T ss_pred -----------------------cccccccccccCChHHHHHHHHHHHHHHHHHhc---cCCceEEEeecceecc
Confidence 000000112345679999999988888776543 4888999999888775
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1.8e-14 Score=124.28 Aligned_cols=194 Identities=18% Similarity=0.136 Sum_probs=126.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCC-cEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga-~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
.+++|++|||||||.||.+++++|.++|. .+|++++|+...... .....+....+|+.+.+++...+
T Consensus 11 ~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~------~~~~~i~~~~~D~~~~~~~~~~~------ 78 (232)
T d2bkaa1 11 RMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDE------EAYKNVNQEVVDFEKLDDYASAF------ 78 (232)
T ss_dssp HHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCS------GGGGGCEEEECCGGGGGGGGGGG------
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcc------cccceeeeeeecccccccccccc------
Confidence 46788999999999999999999999994 279999987532111 11235677778888766544333
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCC
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 241 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~ 241 (350)
...|.+||++|... ..........+|+.++.++.+.+...- -.+||++||.....
T Consensus 79 -~~~d~vi~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~------v~~fi~~Ss~~~~~---------- 133 (232)
T d2bkaa1 79 -QGHDVGFCCLGTTR--------GKAGAEGFVRVDRDYVLKSAELAKAGG------CKHFNLLSSKGADK---------- 133 (232)
T ss_dssp -SSCSEEEECCCCCH--------HHHHHHHHHHHHTHHHHHHHHHHHHTT------CCEEEEECCTTCCT----------
T ss_pred -cccccccccccccc--------cccchhhhhhhcccccceeeecccccC------ccccccCCcccccc----------
Confidence 36899999998631 234456677899999999998875432 23899999876542
Q ss_pred CCccccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCc-EEEEeeCCcccCCcccccchh-
Q 018819 242 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGI-AFASLYPGCIATTGLFREHIP- 319 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi-~v~~v~PG~v~t~~~~~~~~~- 319 (350)
.....|+.+|...+... .++ +. ++..+.||.+.++........
T Consensus 134 ---------------------------~~~~~Y~~~K~~~E~~l----~~~----~~~~~~IlRP~~i~G~~~~~~~~~~ 178 (232)
T d2bkaa1 134 ---------------------------SSNFLYLQVKGEVEAKV----EEL----KFDRYSVFRPGVLLCDRQESRPGEW 178 (232)
T ss_dssp ---------------------------TCSSHHHHHHHHHHHHH----HTT----CCSEEEEEECCEEECTTGGGSHHHH
T ss_pred ---------------------------CccchhHHHHHHhhhcc----ccc----cccceEEecCceeecCCCcCcHHHH
Confidence 23456999998766443 233 33 477889999988643221111
Q ss_pred hHHhhhhh-hHHhhhcCccchhhhhhhccc
Q 018819 320 LFRLLFPP-FQKYITKGYVSEDEAGKRLAQ 348 (350)
Q Consensus 320 ~~~~~~~~-~~~~~~~~~~s~~~~a~~i~~ 348 (350)
+.+...+. .........++++++|+.+++
T Consensus 179 ~~~~~~~~~~~~~~~~~~I~~~dvA~a~i~ 208 (232)
T d2bkaa1 179 LVRKFFGSLPDSWASGHSVPVVTVVRAMLN 208 (232)
T ss_dssp HHHHHHCSCCTTGGGGTEEEHHHHHHHHHH
T ss_pred HHHHHhhccCCcccCCCeEEHHHHHHHHHH
Confidence 01111111 111222345788999987754
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.44 E-value=8.1e-13 Score=113.17 Aligned_cols=124 Identities=21% Similarity=0.198 Sum_probs=87.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCc-EEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 87 GSVIITGASSGLGLATAKALAETGKW-HIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~-~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
++||||||+|.||+++++.|+++|.. .|+...|+....... ..++.++.+|+++.+++.++++ .+
T Consensus 4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~~-------~~ 69 (252)
T d2q46a1 4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI-------GGEADVFIGDITDADSINPAFQ-------GI 69 (252)
T ss_dssp CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHT-------TCCTTEEECCTTSHHHHHHHHT-------TC
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhc-------cCCcEEEEeeeccccccccccc-------cc
Confidence 48999999999999999999999942 466677876543322 2367889999999999887765 68
Q ss_pred cEEEEccccCCCCCC--------CCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCC
Q 018819 166 DVLVCNAAVYLPTAK--------EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 230 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~--------~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~ 230 (350)
|.+||+|+....... ........+.....+|+.++.++......... +...+.|+....
T Consensus 70 d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~s~~~~~ 136 (252)
T d2q46a1 70 DALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGV------KHIVVVGSMGGT 136 (252)
T ss_dssp SEEEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTC------SEEEEEEETTTT
T ss_pred eeeEEEEeeccccccccchhhhhhcccccccchhhhccccccceeeccccccccc------cccccccccccC
Confidence 999999987432111 11112233455667899999888877654432 477777775543
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.26 E-value=4.9e-11 Score=104.55 Aligned_cols=154 Identities=16% Similarity=0.177 Sum_probs=109.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
.+|||||+|.||.+++++|.++| +.|+.++|+. +|++|.++++++++.. .+|+
T Consensus 3 KIlItGasGfiG~~l~~~L~~~g-~~Vi~~~r~~---------------------~D~~d~~~~~~~l~~~-----~~d~ 55 (281)
T d1vl0a_ 3 KILITGANGQLGREIQKQLKGKN-VEVIPTDVQD---------------------LDITNVLAVNKFFNEK-----KPNV 55 (281)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSS-EEEEEECTTT---------------------CCTTCHHHHHHHHHHH-----CCSE
T ss_pred EEEEECCCCHHHHHHHHHHHhCC-CEEEEeechh---------------------ccCCCHHHHHHHHHHc-----CCCE
Confidence 58999999999999999999999 6999988752 5999999999988865 6899
Q ss_pred EEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcccc
Q 018819 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (350)
Q Consensus 168 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (350)
|||+|+.... +......+..+..|+.....+........ ..+++.||.......
T Consensus 56 vih~a~~~~~-----~~~~~~~~~~~~~n~~~~~~~~~~~~~~~-------~~~~~~ss~~v~~~~-------------- 109 (281)
T d1vl0a_ 56 VINCAAHTAV-----DKCEEQYDLAYKINAIGPKNLAAAAYSVG-------AEIVQISTDYVFDGE-------------- 109 (281)
T ss_dssp EEECCCCCCH-----HHHHHCHHHHHHHHTHHHHHHHHHHHHHT-------CEEEEEEEGGGSCSC--------------
T ss_pred EEeecccccc-----ccccccchhhccccccccccccccccccc-------ccccccccceeeecc--------------
Confidence 9999987432 22344456777888888888777654431 256666665433211
Q ss_pred ccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCc
Q 018819 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 312 (350)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~ 312 (350)
...+..+..+..+...|+.+|...+.+. .++ +.+...+.|+++..+.
T Consensus 110 ----------~~~~~~e~~~~~~~~~~~~~k~~~e~~~----~~~----~~~~~i~R~~~vyG~~ 156 (281)
T d1vl0a_ 110 ----------AKEPITEFDEVNPQSAYGKTKLEGENFV----KAL----NPKYYIVRTAWLYGDG 156 (281)
T ss_dssp ----------CSSCBCTTSCCCCCSHHHHHHHHHHHHH----HHH----CSSEEEEEECSEESSS
T ss_pred ----------ccccccccccccchhhhhhhhhHHHHHH----HHh----CCCccccceeEEeCCC
Confidence 1112223334456678998887755443 233 6678889999998764
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=99.25 E-value=1e-11 Score=109.69 Aligned_cols=139 Identities=15% Similarity=0.088 Sum_probs=96.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
.+|||||+|-||.++++.|.++| +. +.+++... .+.+|++|.+.++++++.. .+|+
T Consensus 2 KILItG~tGfiG~~l~~~L~~~g-~~-v~~~~~~~-----------------~~~~Dl~~~~~~~~~i~~~-----~~D~ 57 (298)
T d1n2sa_ 2 NILLFGKTGQVGWELQRSLAPVG-NL-IALDVHSK-----------------EFCGDFSNPKGVAETVRKL-----RPDV 57 (298)
T ss_dssp EEEEECTTSHHHHHHHHHTTTTS-EE-EEECTTCS-----------------SSCCCTTCHHHHHHHHHHH-----CCSE
T ss_pred EEEEECCCCHHHHHHHHHHHhCC-CE-EEEECCCc-----------------cccCcCCCHHHHHHHHHHc-----CCCE
Confidence 58999999999999999999999 44 44444321 1347999999999988876 6999
Q ss_pred EEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcccc
Q 018819 168 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 247 (350)
Q Consensus 168 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 247 (350)
|||+||..... .+.+.-+..++.|+.++.++.+++... +.+++++||.......
T Consensus 58 Vih~Aa~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~-------~~~~~~~ss~~~~~~~-------------- 111 (298)
T d1n2sa_ 58 IVNAAAHTAVD-----KAESEPELAQLLNATSVEAIAKAANET-------GAWVVHYSTDYVFPGT-------------- 111 (298)
T ss_dssp EEECCCCCCHH-----HHTTCHHHHHHHHTHHHHHHHHHHTTT-------TCEEEEEEEGGGSCCC--------------
T ss_pred EEEeccccccc-----ccccCccccccccccccccchhhhhcc-------ccccccccccccccCC--------------
Confidence 99999975321 122334567889999999998876421 2478888776544211
Q ss_pred ccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHH
Q 018819 248 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQ 286 (350)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~ 286 (350)
...+..|..+..+...|+.+|.+.+.+.+
T Consensus 112 ----------~~~~~~E~~~~~p~~~y~~~k~~~e~~~~ 140 (298)
T d1n2sa_ 112 ----------GDIPWQETDATSPLNVYGKTKLAGEKALQ 140 (298)
T ss_dssp ----------TTCCBCTTSCCCCSSHHHHHHHHHHHHHH
T ss_pred ----------CCCCCccccccCCCchHhhhhhhhhhhHH
Confidence 11223333344566789999988765543
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.17 E-value=4.5e-11 Score=100.86 Aligned_cols=149 Identities=13% Similarity=0.148 Sum_probs=99.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCc-EEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 87 GSVIITGASSGLGLATAKALAETGKW-HIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~-~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
|.+|||||||.||++++++|.++|.. +|+...|+... ...+ +..++.|..++.. ...+.+
T Consensus 3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~----------~~~~---~~~~~~d~~~~~~------~~~~~~ 63 (212)
T d2a35a1 3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA----------EHPR---LDNPVGPLAELLP------QLDGSI 63 (212)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC----------CCTT---EECCBSCHHHHGG------GCCSCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchh----------hccc---ccccccchhhhhh------ccccch
Confidence 68999999999999999999999942 56767765311 0112 3445555443322 224578
Q ss_pred cEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCcc
Q 018819 166 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 245 (350)
Q Consensus 166 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~~ 245 (350)
|.+|+++|.... ....-+...++|+.++.++.+++...- -.+++++||..+..
T Consensus 64 d~vi~~~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~------v~~~i~~Ss~~~~~-------------- 116 (212)
T d2a35a1 64 DTAFCCLGTTIK-------EAGSEEAFRAVDFDLPLAVGKRALEMG------ARHYLVVSALGADA-------------- 116 (212)
T ss_dssp SEEEECCCCCHH-------HHSSHHHHHHHHTHHHHHHHHHHHHTT------CCEEEEECCTTCCT--------------
T ss_pred heeeeeeeeecc-------ccccccccccchhhhhhhccccccccc------cccccccccccccc--------------
Confidence 999999986421 112234567889999999998865422 23899999876542
Q ss_pred ccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCc-EEEEeeCCcccCCc
Q 018819 246 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGI-AFASLYPGCIATTG 312 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi-~v~~v~PG~v~t~~ 312 (350)
.....|..+|...+...+ +. +. ++..+.|+.|..+.
T Consensus 117 -----------------------~~~~~y~~~K~~~E~~l~----~~----~~~~~~I~Rp~~v~G~~ 153 (212)
T d2a35a1 117 -----------------------KSSIFYNRVKGELEQALQ----EQ----GWPQLTIARPSLLFGPR 153 (212)
T ss_dssp -----------------------TCSSHHHHHHHHHHHHHT----TS----CCSEEEEEECCSEESTT
T ss_pred -----------------------ccccchhHHHHHHhhhcc----cc----ccccceeeCCcceeCCc
Confidence 234579999987654332 32 43 57788999998764
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=2.2e-10 Score=101.29 Aligned_cols=170 Identities=12% Similarity=0.000 Sum_probs=105.3
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCcEEEEEecC--hhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHH--HcCCC
Q 018819 89 VIITGASSGLGLATAKALAETGKWHIIMACRD--FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR--RSGRP 164 (350)
Q Consensus 89 ~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~--~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~--~~~g~ 164 (350)
||||||+|.||.+++++|+++|.+.|+.+++- ..+.... .+ ...+|..+.+.. .+... ..+..
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~~~~---~~-------~~~~~~~~~~~~---~~~~~~~~~~~~ 68 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNL---VD-------LNIADYMDKEDF---LIQIMAGEEFGD 68 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGHHH---HT-------SCCSEEEEHHHH---HHHHHTTCCCSS
T ss_pred EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchhhcc---cc-------cchhhhccchHH---HHHHhhhhcccc
Confidence 79999999999999999999995457766532 1111111 11 112333333332 22322 23467
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCCCCCCCCCCCCc
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 244 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS~~~~~~~~~~~~~~~~~~ 244 (350)
+++++|.|+..... .. ..+...+.|+.++.++.+++.... -++|+.||.....+....
T Consensus 69 ~~~i~~~aa~~~~~----~~---~~~~~~~~~~~~~~~~l~~~~~~~-------i~~v~~ss~~~~~~~~~~-------- 126 (307)
T d1eq2a_ 69 VEAIFHEGACSSTT----EW---DGKYMMDNNYQYSKELLHYCLERE-------IPFLYASSAATYGGRTSD-------- 126 (307)
T ss_dssp CCEEEECCSCCCTT----CC---CHHHHHHHTHHHHHHHHHHHHHHT-------CCEEEEEEGGGGTTCCSC--------
T ss_pred hhhhhhhccccccc----cc---cccccccccccccccccccccccc-------cccccccccccccccccc--------
Confidence 88999998864321 11 234466778888888887765432 256666666554332110
Q ss_pred cccccccccCCCCCCCcccCCCCCCchhchhhhHHHHHHHHHHHHHhhcCCCCcEEEEeeCCcccCCcc
Q 018819 245 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 313 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~t~~~ 313 (350)
...+..+..+...|+.+|.+.+.+++.+..++ ++.+..+.|..+..|..
T Consensus 127 ----------------~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~----~~~~~~~r~~~vyGp~~ 175 (307)
T d1eq2a_ 127 ----------------FIESREYEKPLNVYGYSKFLFDEYVRQILPEA----NSQIVGFRYFNVYGPRE 175 (307)
T ss_dssp ----------------BCSSGGGCCCSSHHHHHHHHHHHHHHHHGGGC----SSCEEEEEECEEESSSC
T ss_pred ----------------ccccccccccccccccccchhhhhcccccccc----ccccccccceeEeeccc
Confidence 01111123456789999999888888776554 88999999999988754
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=98.95 E-value=3.1e-09 Score=93.90 Aligned_cols=79 Identities=14% Similarity=0.118 Sum_probs=59.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhH--H--HHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK--A--ERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~--~--~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
++||||||+|.||++++++|.++| +.|+++.|+... . ......+. ...+.++.+|++|.+++.+.+.
T Consensus 4 ~KILVtGatG~iG~~l~~~L~~~G-~~V~~~~R~~~~~~~~~~~~~~~~~--~~~v~~v~~d~~d~~~~~~~~~------ 74 (312)
T d1qyda_ 4 SRVLIVGGTGYIGKRIVNASISLG-HPTYVLFRPEVVSNIDKVQMLLYFK--QLGAKLIEASLDDHQRLVDALK------ 74 (312)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCSCCSSCHHHHHHHHHHH--TTTCEEECCCSSCHHHHHHHHT------
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CEEEEEECCCcccchhHHHHHhhhc--cCCcEEEEeecccchhhhhhcc------
Confidence 359999999999999999999999 689888886421 1 11122222 2457889999999998877665
Q ss_pred CCCcEEEEccccC
Q 018819 163 RPLDVLVCNAAVY 175 (350)
Q Consensus 163 g~id~lv~~Ag~~ 175 (350)
..+.++++++..
T Consensus 75 -~~~~~~~~~~~~ 86 (312)
T d1qyda_ 75 -QVDVVISALAGG 86 (312)
T ss_dssp -TCSEEEECCCCS
T ss_pred -Ccchhhhhhhhc
Confidence 578888888753
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=98.84 E-value=2.7e-08 Score=86.99 Aligned_cols=80 Identities=19% Similarity=0.279 Sum_probs=60.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHH-----HHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKA-----ERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~-----~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
.|.||||||+|.||+++++.|.++| +.|++++|+.... ......+. ...+.++.+|+.+.....+.++
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G-~~V~~l~R~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~---- 75 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLG-HPTFLLVRESTASSNSEKAQLLESFK--ASGANIVHGSIDDHASLVEAVK---- 75 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCCCCTTTTHHHHHHHHHHH--TTTCEEECCCTTCHHHHHHHHH----
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CeEEEEECCCccccchhHHHHHHhhc--cCCcEEEEeecccchhhhhhhh----
Confidence 3579999999999999999999999 5899988864221 11122222 2357888999999998777765
Q ss_pred cCCCCcEEEEccccC
Q 018819 161 SGRPLDVLVCNAAVY 175 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~ 175 (350)
..+.+||+++..
T Consensus 76 ---~~~~vi~~~~~~ 87 (307)
T d1qyca_ 76 ---NVDVVISTVGSL 87 (307)
T ss_dssp ---TCSEEEECCCGG
T ss_pred ---hceeeeeccccc
Confidence 578899988753
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=98.78 E-value=9.5e-08 Score=86.09 Aligned_cols=78 Identities=14% Similarity=0.169 Sum_probs=56.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHH-HHHHHHHHHcCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSV-RQFVDTFRRSGR 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v-~~~~~~~~~~~g 163 (350)
+.|+|+||||+|.||.++++.|.++| ++|+++.|+....... .+.. ...+.++.+|++|..++ ..++ .
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G-~~V~~l~R~~~~~~~~--~~~~-~~~v~~~~gD~~d~~~~~~~a~-------~ 70 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVG-HHVRAQVHSLKGLIAE--ELQA-IPNVTLFQGPLLNNVPLMDTLF-------E 70 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTT-CCEEEEESCSCSHHHH--HHHT-STTEEEEESCCTTCHHHHHHHH-------T
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCC-CeEEEEECCcchhhhh--hhcc-cCCCEEEEeeCCCcHHHHHHHh-------c
Confidence 45799999999999999999999999 5899999976543221 1111 23588999999986553 3332 3
Q ss_pred CCcEEEEccc
Q 018819 164 PLDVLVCNAA 173 (350)
Q Consensus 164 ~id~lv~~Ag 173 (350)
..|.++.+..
T Consensus 71 ~~~~~~~~~~ 80 (350)
T d1xgka_ 71 GAHLAFINTT 80 (350)
T ss_dssp TCSEEEECCC
T ss_pred CCceEEeecc
Confidence 5777776643
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.62 E-value=8.2e-13 Score=110.09 Aligned_cols=45 Identities=31% Similarity=0.330 Sum_probs=39.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhcc
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM 133 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~ 133 (350)
++.|+||+|+||+++|+.|++.| ++|++.+|++++++++.+++..
T Consensus 2 ki~vigGaG~iG~alA~~la~~G-~~V~l~~R~~e~~~~l~~~i~~ 46 (212)
T d1jaya_ 2 RVALLGGTGNLGKGLALRLATLG-HEIVVGSRREEKAEAKAAEYRR 46 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTT-CEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEEeCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHh
Confidence 47788999999999999999999 5999999999998888887753
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.02 E-value=2.2e-05 Score=61.98 Aligned_cols=85 Identities=24% Similarity=0.403 Sum_probs=62.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
+++++.++|.|+ |++|..+++.|..+|+.++.++.|+.++.+++.+++. ..+. ++ +++.+.+.
T Consensus 21 ~l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~-----~~~~--~~---~~~~~~l~------ 83 (159)
T d1gpja2 21 SLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLG-----GEAV--RF---DELVDHLA------ 83 (159)
T ss_dssp CCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHT-----CEEC--CG---GGHHHHHH------
T ss_pred CcccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhh-----cccc--cc---hhHHHHhc------
Confidence 468889999998 9999999999999998789999999988888877763 1222 22 33333333
Q ss_pred CCCcEEEEccccCCCCCCCCCCCHHHHH
Q 018819 163 RPLDVLVCNAAVYLPTAKEPTFTAEGFE 190 (350)
Q Consensus 163 g~id~lv~~Ag~~~~~~~~~~~~~~~~~ 190 (350)
..|++|++.+...+ -++.+.++
T Consensus 84 -~~Divi~atss~~~-----ii~~~~i~ 105 (159)
T d1gpja2 84 -RSDVVVSATAAPHP-----VIHVDDVR 105 (159)
T ss_dssp -TCSEEEECCSSSSC-----CBCHHHHH
T ss_pred -cCCEEEEecCCCCc-----cccHhhhH
Confidence 68999999885322 24555544
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=97.95 E-value=2.2e-05 Score=63.52 Aligned_cols=83 Identities=18% Similarity=0.186 Sum_probs=63.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHH---HhccCCCceEEEEccCCCHHHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK---SAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~---~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
++++|+++|.|+ ||.|++++..|.+.|+.++++..|+.+..+++.. .+... .......+|+.+.+++.....
T Consensus 15 ~l~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--- 89 (182)
T d1vi2a1 15 DIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNEN-TDCVVTVTDLADQQAFAEALA--- 89 (182)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHH-SSCEEEEEETTCHHHHHHHHH---
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhh-cCcceEeeecccccchhhhhc---
Confidence 468899999998 7999999999999999899999998766555443 33221 224456789999887766544
Q ss_pred HcCCCCcEEEEcccc
Q 018819 160 RSGRPLDVLVCNAAV 174 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~ 174 (350)
..|++||+...
T Consensus 90 ----~~diiIN~Tp~ 100 (182)
T d1vi2a1 90 ----SADILTNGTKV 100 (182)
T ss_dssp ----TCSEEEECSST
T ss_pred ----ccceeccccCC
Confidence 68999999765
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=97.65 E-value=6.8e-05 Score=60.40 Aligned_cols=80 Identities=13% Similarity=0.111 Sum_probs=54.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+|.++||+||+||+|...++.....|+ +||.+.++.++.+.+. ..|....+ |-.+++..+.+.+.. ...+
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~----~~Ga~~vi---~~~~~~~~~~~~~~~--~~~G 98 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLK----QIGFDAAF---NYKTVNSLEEALKKA--SPDG 98 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH----HTTCSEEE---ETTSCSCHHHHHHHH--CTTC
T ss_pred CCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHH----hhhhhhhc---ccccccHHHHHHHHh--hcCC
Confidence 577999999999999999999999997 8999988876644332 23443333 333333333333322 2347
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|+++++.|.
T Consensus 99 vd~v~D~vG~ 108 (182)
T d1v3va2 99 YDCYFDNVGG 108 (182)
T ss_dssp EEEEEESSCH
T ss_pred CceeEEecCc
Confidence 9999999873
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.64 E-value=0.00011 Score=58.57 Aligned_cols=79 Identities=16% Similarity=0.221 Sum_probs=54.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+|.++||+||+|++|...++.....|+ +|+.+.+++++.+.+ +++ |..- ..|.++.+-.+++.+.. ...+
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~-~~~---Ga~~---vi~~~~~~~~~~i~~~t--~~~g 97 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIV-LQN---GAHE---VFNHREVNYIDKIKKYV--GEKG 97 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH-HHT---TCSE---EEETTSTTHHHHHHHHH--CTTC
T ss_pred CCCEEEEEeccccccccccccccccCc-ccccccccccccccc-ccc---Cccc---ccccccccHHHHhhhhh--ccCC
Confidence 567999999999999999999999997 788888876654433 333 3332 23666655444433322 1246
Q ss_pred CcEEEEccc
Q 018819 165 LDVLVCNAA 173 (350)
Q Consensus 165 id~lv~~Ag 173 (350)
+|+++.+.|
T Consensus 98 ~d~v~d~~g 106 (174)
T d1yb5a2 98 IDIIIEMLA 106 (174)
T ss_dssp EEEEEESCH
T ss_pred ceEEeeccc
Confidence 999998876
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.63 E-value=0.00015 Score=57.63 Aligned_cols=74 Identities=20% Similarity=0.310 Sum_probs=55.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
+|.++|.|+ |.+|+.+|+.|+++| +.|++.+|+.++.+++.+.+. .......+..+.......+. ..
T Consensus 2 ~K~IliiGa-G~~G~~~a~~L~~~g-~~V~v~dr~~~~a~~l~~~~~----~~~~~~~~~~~~~~~~~~i~-------~~ 68 (182)
T d1e5qa1 2 TKSVLMLGS-GFVTRPTLDVLTDSG-IKVTVACRTLESAKKLSAGVQ----HSTPISLDVNDDAALDAEVA-------KH 68 (182)
T ss_dssp CCEEEEECC-STTHHHHHHHHHTTT-CEEEEEESCHHHHHHHHTTCT----TEEEEECCTTCHHHHHHHHT-------TS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC-CEEEEEECChHHHHHHHhccc----ccccccccccchhhhHhhhh-------cc
Confidence 578999987 999999999999999 599999999988887766442 34455567766666555543 45
Q ss_pred cEEEEcc
Q 018819 166 DVLVCNA 172 (350)
Q Consensus 166 d~lv~~A 172 (350)
|.++...
T Consensus 69 ~~~i~~~ 75 (182)
T d1e5qa1 69 DLVISLI 75 (182)
T ss_dssp SEEEECS
T ss_pred ceeEeec
Confidence 6666543
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=97.55 E-value=4.9e-05 Score=61.73 Aligned_cols=87 Identities=14% Similarity=0.068 Sum_probs=54.2
Q ss_pred CCEEEE-EcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHH-HcCC
Q 018819 86 KGSVII-TGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR-RSGR 163 (350)
Q Consensus 86 ~~~~lI-tGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~-~~~g 163 (350)
|.+++| +||+||+|...++..-..|+ +||.+.|+.+..++..+.+++.|....+ ..|-.+..++...+.++. ...+
T Consensus 29 g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGad~vi-~~~~~~~~~~~~~v~~~~~~~g~ 106 (189)
T d1gu7a2 29 GKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGATQVI-TEDQNNSREFGPTIKEWIKQSGG 106 (189)
T ss_dssp TTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTCSEEE-EHHHHHCGGGHHHHHHHHHHHTC
T ss_pred CCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhccccEEE-eccccchhHHHHHHHHHHhhccC
Confidence 444455 79999999999988888897 7888777766666665555555554332 222111122333333333 2456
Q ss_pred CCcEEEEcccc
Q 018819 164 PLDVLVCNAAV 174 (350)
Q Consensus 164 ~id~lv~~Ag~ 174 (350)
++|+++++.|.
T Consensus 107 ~vdvv~D~vg~ 117 (189)
T d1gu7a2 107 EAKLALNCVGG 117 (189)
T ss_dssp CEEEEEESSCH
T ss_pred CceEEEECCCc
Confidence 79999998763
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.46 E-value=0.00043 Score=55.44 Aligned_cols=83 Identities=18% Similarity=0.217 Sum_probs=54.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+|.+++|+|+ |+||...++.+...|+.+|+++++++++.+.+ +++ |... ++...=.+..+..+.+.+... ..+
T Consensus 28 ~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a-~~l---Ga~~-vi~~~~~~~~~~~~~i~~~~~-~~g 100 (182)
T d1vj0a2 28 AGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPNRLKLA-EEI---GADL-TLNRRETSVEERRKAIMDITH-GRG 100 (182)
T ss_dssp BTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCHHHHHHH-HHT---TCSE-EEETTTSCHHHHHHHHHHHTT-TSC
T ss_pred CCCEEEEECC-Cccchhheeccccccccccccccccccccccc-ccc---cceE-EEeccccchHHHHHHHHHhhC-CCC
Confidence 4679999987 89999999999999987899999998777544 444 3332 222222233333333333222 235
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|.+.|.
T Consensus 101 ~Dvvid~vG~ 110 (182)
T d1vj0a2 101 ADFILEATGD 110 (182)
T ss_dssp EEEEEECSSC
T ss_pred ceEEeecCCc
Confidence 9999999875
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.42 E-value=0.00017 Score=57.90 Aligned_cols=79 Identities=23% Similarity=0.278 Sum_probs=52.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+|.++||+||+|++|...++.+...|+ +|+++.++.++.+. +++.|.... .|..+++-.+++. +.. ...+
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~----l~~~Ga~~v---i~~~~~~~~~~v~-~~t-~~~g 94 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREM----LSRLGVEYV---GDSRSVDFADEIL-ELT-DGYG 94 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHH----HHTTCCSEE---EETTCSTHHHHHH-HHT-TTCC
T ss_pred CCCEEEEECCCCCcccccchhhccccc-cceeeecccccccc----ccccccccc---ccCCccCHHHHHH-HHh-CCCC
Confidence 467999999999999999999999996 88888887655433 233444422 3445543333322 221 1236
Q ss_pred CcEEEEccc
Q 018819 165 LDVLVCNAA 173 (350)
Q Consensus 165 id~lv~~Ag 173 (350)
+|+++.+.|
T Consensus 95 ~d~v~d~~g 103 (183)
T d1pqwa_ 95 VDVVLNSLA 103 (183)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeccc
Confidence 999999887
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.41 E-value=0.00041 Score=54.82 Aligned_cols=82 Identities=17% Similarity=0.241 Sum_probs=55.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC-C
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG-R 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~-g 163 (350)
.+.+++|+| +|+||...++.+...|+ +|+++++++++.+.+.+ + +....+ ..|-.+ ++.....+.+.+.. .
T Consensus 26 ~g~~vlV~G-~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~-~---ga~~~~-~~~~~~-~~~~~~~~~~~~~~g~ 97 (170)
T d1e3ja2 26 LGTTVLVIG-AGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKN-C---GADVTL-VVDPAK-EEESSIIERIRSAIGD 97 (170)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH-T---TCSEEE-ECCTTT-SCHHHHHHHHHHHSSS
T ss_pred CCCEEEEEc-ccccchhhHhhHhhhcc-cccccchHHHHHHHHHH-c---CCcEEE-eccccc-cccchhhhhhhccccc
Confidence 456899997 68999999999999997 89999999887655433 3 333322 233222 22333444554433 4
Q ss_pred CCcEEEEcccc
Q 018819 164 PLDVLVCNAAV 174 (350)
Q Consensus 164 ~id~lv~~Ag~ 174 (350)
.+|++|.++|.
T Consensus 98 g~D~vid~~g~ 108 (170)
T d1e3ja2 98 LPNVTIDCSGN 108 (170)
T ss_dssp CCSEEEECSCC
T ss_pred CCceeeecCCC
Confidence 79999999885
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.41 E-value=0.0001 Score=59.70 Aligned_cols=80 Identities=13% Similarity=0.108 Sum_probs=55.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
++++||+||+||+|...++.....|+.+|+.++++.++...+.+++. .+ ...|..+++. .+.++++.. ..+
T Consensus 31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~g---ad---~vi~~~~~~~-~~~~~~~~~--~Gv 101 (187)
T d1vj1a2 31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELG---FD---AAVNYKTGNV-AEQLREACP--GGV 101 (187)
T ss_dssp CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSC---CS---EEEETTSSCH-HHHHHHHCT--TCE
T ss_pred CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhccc---ce---EEeeccchhH-HHHHHHHhc--cCc
Confidence 46999999999999999998888998777777777777666666553 22 2235554433 333333322 369
Q ss_pred cEEEEcccc
Q 018819 166 DVLVCNAAV 174 (350)
Q Consensus 166 d~lv~~Ag~ 174 (350)
|+++.+.|.
T Consensus 102 Dvv~D~vGg 110 (187)
T d1vj1a2 102 DVYFDNVGG 110 (187)
T ss_dssp EEEEESSCH
T ss_pred eEEEecCCc
Confidence 999988873
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=97.40 E-value=0.00022 Score=56.98 Aligned_cols=80 Identities=18% Similarity=0.224 Sum_probs=56.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+|+++||+||+|++|...++.....|+ +|+.+.+++++.+.+. ++ |.+. .+|.++++-.+++ .++. ....
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~-~l---Ga~~---vi~~~~~d~~~~v-~~~t-~g~g 97 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSAL-KA---GAWQ---VINYREEDLVERL-KEIT-GGKK 97 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHH-HH---TCSE---EEETTTSCHHHHH-HHHT-TTCC
T ss_pred CCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHH-hc---CCeE---EEECCCCCHHHHH-HHHh-CCCC
Confidence 467999999999999999999999997 8999999987765543 33 3331 2466664433333 2222 2346
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|+++.+.|.
T Consensus 98 ~d~v~d~~g~ 107 (179)
T d1qora2 98 VRVVYDSVGR 107 (179)
T ss_dssp EEEEEECSCG
T ss_pred eEEEEeCccH
Confidence 8999988874
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.38 E-value=0.00038 Score=52.70 Aligned_cols=71 Identities=20% Similarity=0.296 Sum_probs=56.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
.++|.|+ |.+|+.+++.|.++| +.|++++++++..+++.+++ .+.++..|.+|++.++++ .....|.
T Consensus 2 ~IvI~G~-G~~G~~la~~L~~~g-~~v~vid~d~~~~~~~~~~~-----~~~vi~Gd~~~~~~l~~~------~i~~a~~ 68 (132)
T d1lssa_ 2 YIIIAGI-GRVGYTLAKSLSEKG-HDIVLIDIDKDICKKASAEI-----DALVINGDCTKIKTLEDA------GIEDADM 68 (132)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHC-----SSEEEESCTTSHHHHHHT------TTTTCSE
T ss_pred EEEEECC-CHHHHHHHHHHHHCC-CCcceecCChhhhhhhhhhh-----hhhhccCcccchhhhhhc------Chhhhhh
Confidence 5888997 999999999999999 69999999988887765543 356788999999877665 1235677
Q ss_pred EEEc
Q 018819 168 LVCN 171 (350)
Q Consensus 168 lv~~ 171 (350)
++..
T Consensus 69 vv~~ 72 (132)
T d1lssa_ 69 YIAV 72 (132)
T ss_dssp EEEC
T ss_pred hccc
Confidence 7653
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=0.0013 Score=51.87 Aligned_cols=82 Identities=15% Similarity=0.212 Sum_probs=57.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
++.+++|.|+ |++|...+..+...|+.+|+++++++.+.+.+ +++ |.+. ++..+-.+..+..+.++.-. ..+
T Consensus 26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a-~~~---Ga~~-~~~~~~~~~~~~~~~~~~~~--g~g 97 (171)
T d1pl8a2 26 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKA-KEI---GADL-VLQISKESPQEIARKVEGQL--GCK 97 (171)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH-HHT---TCSE-EEECSSCCHHHHHHHHHHHH--TSC
T ss_pred CCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHHHHHHH-HHh---CCcc-cccccccccccccccccccC--CCC
Confidence 4558999986 99999999999999988999999998777644 334 3332 33344445555444444322 247
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|.+.|.
T Consensus 98 ~Dvvid~~G~ 107 (171)
T d1pl8a2 98 PEVTIECTGA 107 (171)
T ss_dssp CSEEEECSCC
T ss_pred ceEEEeccCC
Confidence 9999999885
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.29 E-value=0.00057 Score=54.15 Aligned_cols=75 Identities=16% Similarity=0.228 Sum_probs=56.5
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.++||.++|.|+ ||-+++++..|.+.|+ +|.++.|+.++.+++.+.+...+ .+..+ +..+. ..
T Consensus 15 ~~~~k~vlIlGa-GGaarai~~al~~~g~-~i~I~nRt~~ka~~l~~~~~~~~-~~~~~--~~~~~------------~~ 77 (170)
T d1nyta1 15 IRPGLRILLIGA-GGASRGVLLPLLSLDC-AVTITNRTVSRAEELAKLFAHTG-SIQAL--SMDEL------------EG 77 (170)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHTGGGS-SEEEC--CSGGG------------TT
T ss_pred CCCCCEEEEECC-cHHHHHHHHHhcccce-EEEeccchHHHHHHHHHHHhhcc-ccccc--ccccc------------cc
Confidence 457899999997 8999999999999997 79999999999988888776443 23332 22211 12
Q ss_pred CCCcEEEEcccc
Q 018819 163 RPLDVLVCNAAV 174 (350)
Q Consensus 163 g~id~lv~~Ag~ 174 (350)
...|++||+.-+
T Consensus 78 ~~~dliIN~Tp~ 89 (170)
T d1nyta1 78 HEFDLIINATSS 89 (170)
T ss_dssp CCCSEEEECCSC
T ss_pred cccceeeccccc
Confidence 368999999754
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.25 E-value=0.00052 Score=54.21 Aligned_cols=81 Identities=16% Similarity=0.206 Sum_probs=55.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
++.+++|+|++|++|..+++.+...|+.+|+++++++++.+.+. ++ |... .+ |.++.+..++..+.. ..+.
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~-~~---Ga~~-~i--~~~~~~~~~~~~~~~--~~~~ 97 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK-RA---GADY-VI--NASMQDPLAEIRRIT--ESKG 97 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHH-HH---TCSE-EE--ETTTSCHHHHHHHHT--TTSC
T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHH-Hc---CCce-ee--ccCCcCHHHHHHHHh--hccc
Confidence 45689999999999999999999999779999999877655443 33 3332 22 344433334433322 1246
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|.++|.
T Consensus 98 ~d~vid~~g~ 107 (170)
T d1jvba2 98 VDAVIDLNNS 107 (170)
T ss_dssp EEEEEESCCC
T ss_pred chhhhccccc
Confidence 9999999875
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=97.21 E-value=0.0013 Score=52.06 Aligned_cols=76 Identities=20% Similarity=0.210 Sum_probs=57.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+++|+++|.|+ ||-+++++..|.+.+ .+|.++.|+.++.+...+.+...+ .+..+..|-. ..
T Consensus 15 ~~~~k~vlIlGa-GGaarai~~aL~~~~-~~i~I~nR~~~~a~~l~~~~~~~~-~~~~~~~~~~--------------~~ 77 (171)
T d1p77a1 15 LRPNQHVLILGA-GGATKGVLLPLLQAQ-QNIVLANRTFSKTKELAERFQPYG-NIQAVSMDSI--------------PL 77 (171)
T ss_dssp CCTTCEEEEECC-SHHHHTTHHHHHHTT-CEEEEEESSHHHHHHHHHHHGGGS-CEEEEEGGGC--------------CC
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHcccC-ceeeeccchHHHHHHHHHHHhhcc-ccchhhhccc--------------cc
Confidence 457889999986 888999999999866 699999999999998888876433 3444444411 13
Q ss_pred CCCcEEEEccccC
Q 018819 163 RPLDVLVCNAAVY 175 (350)
Q Consensus 163 g~id~lv~~Ag~~ 175 (350)
...|++||+....
T Consensus 78 ~~~diiIN~tp~g 90 (171)
T d1p77a1 78 QTYDLVINATSAG 90 (171)
T ss_dssp SCCSEEEECCCC-
T ss_pred cccceeeeccccc
Confidence 4789999997663
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=97.12 E-value=0.00036 Score=47.42 Aligned_cols=42 Identities=24% Similarity=0.413 Sum_probs=35.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHH
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA 127 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~ 127 (350)
++.++||+||+||+|....+.+...|+ +|+.+.+++++.+-+
T Consensus 31 ~~~~vlI~gasGgVG~~aiQlak~~G~-~Vi~~t~s~~k~~~~ 72 (77)
T d1o8ca2 31 QDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYL 72 (77)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHH
T ss_pred CCCcEEEEeCCCcHHHHHHHHHHHcCC-eEEEEECCHHHHHHH
Confidence 466899999999999999998888996 888888887665443
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=97.10 E-value=0.00078 Score=53.36 Aligned_cols=74 Identities=15% Similarity=0.140 Sum_probs=50.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+|+++||+||+|++|...++.....|+ +|+.+.+++++.+.+ +++ |.+.. .|..+. .+++.+ ..+
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~-~~l---Ga~~~---i~~~~~------~~~~~~-~~g 91 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALP-LAL---GAEEA---ATYAEV------PERAKA-WGG 91 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHH-HHT---TCSEE---EEGGGH------HHHHHH-TTS
T ss_pred CCCEEEEEeccccchhhhhhhhccccc-ccccccccccccccc-ccc---cccee---eehhhh------hhhhhc-ccc
Confidence 567999999999999999998889997 888888877665443 333 33322 243322 122222 347
Q ss_pred CcEEEEccc
Q 018819 165 LDVLVCNAA 173 (350)
Q Consensus 165 id~lv~~Ag 173 (350)
+|+++.+.|
T Consensus 92 ~D~v~d~~G 100 (171)
T d1iz0a2 92 LDLVLEVRG 100 (171)
T ss_dssp EEEEEECSC
T ss_pred ccccccccc
Confidence 999999765
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=97.07 E-value=0.00084 Score=53.30 Aligned_cols=81 Identities=15% Similarity=0.150 Sum_probs=55.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+|.+++|.|+ ||+|...+..+...|+.+|+++++++++.+.. .++ |....+...|-. +.+.+..+... .+.
T Consensus 28 ~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a-~~~---Ga~~~i~~~~~~--~~~~~~~~~~~--~~G 98 (176)
T d2jhfa2 28 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKA-KEV---GATECVNPQDYK--KPIQEVLTEMS--NGG 98 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HHT---TCSEEECGGGCS--SCHHHHHHHHT--TSC
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHHHHHH-HHh---CCeeEEecCCch--hHHHHHHHHHh--cCC
Confidence 5779999998 78999999999999988999999998886644 333 222222122222 23344444332 357
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|.+.|.
T Consensus 99 ~D~vid~~G~ 108 (176)
T d2jhfa2 99 VDFSFEVIGR 108 (176)
T ss_dssp BSEEEECSCC
T ss_pred CCEEEecCCc
Confidence 9999999886
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.01 E-value=0.00052 Score=54.71 Aligned_cols=78 Identities=14% Similarity=0.208 Sum_probs=50.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+|.++||+||+||+|...++.....|+ +|+.+++++++.+.+. ++ |.+..+ |-.+. ..+....+ ..++
T Consensus 31 ~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~-~l---Ga~~vi---~~~~~--~~~~~~~~--~~~g 98 (176)
T d1xa0a2 31 ERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLR-VL---GAKEVL---AREDV--MAERIRPL--DKQR 98 (176)
T ss_dssp GGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHH-HT---TCSEEE---ECC-----------C--CSCC
T ss_pred CCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHH-hc---ccceee---ecchh--HHHHHHHh--hccC
Confidence 467899999999999999998889997 8888888877655443 33 333322 32221 12222111 2358
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|.+.|.
T Consensus 99 vD~vid~vgg 108 (176)
T d1xa0a2 99 WAAAVDPVGG 108 (176)
T ss_dssp EEEEEECSTT
T ss_pred cCEEEEcCCc
Confidence 9999999874
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.94 E-value=0.0019 Score=51.11 Aligned_cols=79 Identities=18% Similarity=0.153 Sum_probs=53.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+|.+++|.|+ |+||...+..+...|+.+|+++++++.+.+.+ +++. .. .+ .|..+++ +.+.+.++. .++
T Consensus 28 ~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a-~~~G---a~-~~--i~~~~~~-~~~~i~~~t--~gg 96 (174)
T d1f8fa2 28 PASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLELA-KQLG---AT-HV--INSKTQD-PVAAIKEIT--DGG 96 (174)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH-HHHT---CS-EE--EETTTSC-HHHHHHHHT--TSC
T ss_pred CCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHHHHHHHH-HHcC---Ce-EE--EeCCCcC-HHHHHHHHc--CCC
Confidence 5678999987 89999999999899987888888887666554 3342 22 23 3444433 233333332 247
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|.+.|.
T Consensus 97 ~D~vid~~G~ 106 (174)
T d1f8fa2 97 VNFALESTGS 106 (174)
T ss_dssp EEEEEECSCC
T ss_pred CcEEEEcCCc
Confidence 9999999885
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.93 E-value=0.00079 Score=53.51 Aligned_cols=80 Identities=21% Similarity=0.214 Sum_probs=53.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+|.+++|.|+ ||+|...++.+...|+.+|+++++++++.+.+ +++. .. ++ +|..+.+..+++ .++.. ...
T Consensus 27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a-~~lG---a~-~~--i~~~~~~~~~~v-~~~t~-g~G 96 (174)
T d1jqba2 27 MGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRPICVEAA-KFYG---AT-DI--LNYKNGHIEDQV-MKLTN-GKG 96 (174)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCHHHHHHH-HHHT---CS-EE--ECGGGSCHHHHH-HHHTT-TSC
T ss_pred CCCEEEEEcC-CcchhhhhhhhhcccccccccccchhhhHHHH-HhhC---cc-cc--ccccchhHHHHH-HHHhh-ccC
Confidence 4568999986 89999999999999987899999988775544 3342 22 22 344443333322 22221 235
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|.++|.
T Consensus 97 ~D~vid~~g~ 106 (174)
T d1jqba2 97 VDRVIMAGGG 106 (174)
T ss_dssp EEEEEECSSC
T ss_pred cceEEEccCC
Confidence 9999999985
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.93 E-value=0.0039 Score=47.68 Aligned_cols=116 Identities=17% Similarity=0.118 Sum_probs=66.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHcC-CcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 88 SVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~G-a~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
.+.|+||+|.+|.++|..|+.+| +..+++.+.+..+.+. ..+....... ....-+. ..+..+.+ ..-|
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a--~Dl~~~~~~~-~~~~~~~-~~~~~~~~-------~~aD 70 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVA--ADLSHIETRA-TVKGYLG-PEQLPDCL-------KGCD 70 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHH--HHHTTSSSSC-EEEEEES-GGGHHHHH-------TTCS
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhh--HHHhhhhhhc-CCCeEEc-CCChHHHh-------CCCC
Confidence 57899999999999999999988 4689999987654333 2333221111 1111111 22222222 2689
Q ss_pred EEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEec
Q 018819 167 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (350)
Q Consensus 167 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS 226 (350)
++|..||.... + .++.. ..++.|..-.-.+.+. +.+.. +.+.|+++|.
T Consensus 71 ivVitag~~~~--~--g~sR~---~ll~~N~~i~~~i~~~----i~~~~-p~~iiivvtN 118 (144)
T d1mlda1 71 VVVIPAGVPRK--P--GMTRD---DLFNTNATIVATLTAA----CAQHC-PDAMICIISN 118 (144)
T ss_dssp EEEECCSCCCC--T--TCCGG---GGHHHHHHHHHHHHHH----HHHHC-TTSEEEECSS
T ss_pred EEEECCCcCCC--C--CCCcc---hHHHHHHHHHHHHHHH----HHhcC-CCeEEEEecC
Confidence 99999997432 1 22332 2456665544444444 44332 1356666654
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=96.89 E-value=0.0059 Score=46.72 Aligned_cols=113 Identities=13% Similarity=0.097 Sum_probs=65.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcC-CcEEEEEecChhHHHHHHHHhcc---CCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 86 KGSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGM---AKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~G-a~~Vi~~~r~~~~~~~~~~~l~~---~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
.+.+.|.|+ |.+|..+|..|+.+| +..|++++++++..+....++.. ..........|. + .
T Consensus 5 ~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~---~-----------~ 69 (146)
T d1ez4a1 5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY---S-----------D 69 (146)
T ss_dssp BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG---G-----------G
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccH---H-----------H
Confidence 457888895 999999999999988 46899999998766544444422 122334444443 1 1
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEe
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVG 225 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vS 225 (350)
...-|++|.+||..... ..+ -...+..|+. +.+...+.+.+... .+.++++|
T Consensus 70 ~~~adivvitag~~~~~----g~~---r~~l~~~N~~----i~~~~~~~i~~~~p-~aivivvt 121 (146)
T d1ez4a1 70 CKDADLVVITAGAPQKP----GES---RLDLVNKNLN----ILSSIVKPVVDSGF-DGIFLVAA 121 (146)
T ss_dssp GTTCSEEEECCCC-----------------CHHHHHH----HHHHHHHHHHHTTC-CSEEEECS
T ss_pred hccccEEEEecccccCC----CCC---HHHHHHHHHH----HHHHHHHHHhhcCC-CcEEEEeC
Confidence 23689999999974321 112 2334455543 44555555555432 35555554
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.86 E-value=0.0051 Score=47.24 Aligned_cols=114 Identities=21% Similarity=0.149 Sum_probs=68.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcC-CcEEEEEecChhHHHHHHHHhcc----CCCceEEEEccCCCHHHHHHHHHHHH
Q 018819 85 RKGSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGM----AKENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~G-a~~Vi~~~r~~~~~~~~~~~l~~----~~~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
.++.+.|+|+ |.+|..+|..|+.+| +..|++++++++..+....++.+ ....+.....|..
T Consensus 5 ~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~------------- 70 (148)
T d1ldna1 5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYD------------- 70 (148)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGG-------------
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHH-------------
Confidence 4567888896 999999999999987 45799999988765554444432 1223444444431
Q ss_pred HcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEe
Q 018819 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVG 225 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vS 225 (350)
....-|++|.++|...... .+.. ..+..|. .+.+.+.+.+.+.. +.+.+|++|
T Consensus 71 -~l~daDvvvitag~~~~~~----~~R~---dl~~~N~----~i~~~i~~~i~~~~-p~a~~ivvt 123 (148)
T d1ldna1 71 -DCRDADLVVICAGANQKPG----ETRL---DLVDKNI----AIFRSIVESVMASG-FQGLFLVAT 123 (148)
T ss_dssp -GTTTCSEEEECCSCCCCTT----TCSG---GGHHHHH----HHHHHHHHHHHHHT-CCSEEEECS
T ss_pred -HhccceeEEEecccccccC----cchh---HHHHHHH----HHHHHHHHHHHhhC-CCceEEEec
Confidence 1235799999999853311 1211 2233443 33444455444433 246677665
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.84 E-value=0.0035 Score=49.69 Aligned_cols=80 Identities=15% Similarity=0.122 Sum_probs=54.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHH-HHHHHHHHHHcCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDS-VRQFVDTFRRSGR 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~-v~~~~~~~~~~~g 163 (350)
+|.+++|.|+ ||+|...+..+...|+.+||.+++++++++.. +++ |....+ |..+.+. .+.+.+ ... .+
T Consensus 29 ~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~A-k~~---GA~~~i---n~~~~~~~~~~~~~-~~~-g~ 98 (176)
T d1d1ta2 29 PGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKDKFEKA-MAV---GATECI---SPKDSTKPISEVLS-EMT-GN 98 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HHH---TCSEEE---CGGGCSSCHHHHHH-HHH-TS
T ss_pred CCCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcHHHHHHH-Hhc---CCcEEE---CccccchHHHHHHH-Hhc-cc
Confidence 5779999986 89999999999999988999999998887644 333 333222 2222221 222222 222 34
Q ss_pred CCcEEEEcccc
Q 018819 164 PLDVLVCNAAV 174 (350)
Q Consensus 164 ~id~lv~~Ag~ 174 (350)
.+|.+|.+.|.
T Consensus 99 G~d~vi~~~g~ 109 (176)
T d1d1ta2 99 NVGYTFEVIGH 109 (176)
T ss_dssp CCCEEEECSCC
T ss_pred cceEEEEeCCc
Confidence 79999999885
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.84 E-value=0.0015 Score=51.63 Aligned_cols=80 Identities=16% Similarity=0.093 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCC-CHHHHHHHHHHHHHcCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA-SLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs-~~~~v~~~~~~~~~~~g 163 (350)
+|.+++|.|+ ||+|...++.+...|+.+|+.+++++++.+ ..+++. ... ++ |.. +.+.+.+.+.... .+
T Consensus 28 ~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~k~~-~ak~lG---a~~-~i--~~~~~~~~~~~~~~~~~--~~ 97 (176)
T d2fzwa2 28 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFA-RAKEFG---ATE-CI--NPQDFSKPIQEVLIEMT--DG 97 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHH-HHHHHT---CSE-EE--CGGGCSSCHHHHHHHHT--TS
T ss_pred CCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccHHHHH-HHHHhC---CcE-EE--eCCchhhHHHHHHHHHc--CC
Confidence 5679999998 699999999999999888988888877754 344453 222 22 222 1233444444332 34
Q ss_pred CCcEEEEcccc
Q 018819 164 PLDVLVCNAAV 174 (350)
Q Consensus 164 ~id~lv~~Ag~ 174 (350)
++|++|.+.|.
T Consensus 98 g~D~vid~~G~ 108 (176)
T d2fzwa2 98 GVDYSFECIGN 108 (176)
T ss_dssp CBSEEEECSCC
T ss_pred CCcEeeecCCC
Confidence 79999999874
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.80 E-value=0.0021 Score=50.88 Aligned_cols=81 Identities=16% Similarity=0.135 Sum_probs=54.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+|.+++|.|+ ||||...+..+...|+.+|+++++++++.+. .+++. ... ++...-.| +.++...+... .++
T Consensus 28 ~G~~VlV~G~-G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~-a~~~G---a~~-~i~~~~~~-~~~~~~~~~~~--~~G 98 (174)
T d1e3ia2 28 PGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPK-AKALG---ATD-CLNPRELD-KPVQDVITELT--AGG 98 (174)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHH-HHHTT---CSE-EECGGGCS-SCHHHHHHHHH--TSC
T ss_pred CCCEEEEECC-ChHHHHHHHHHHHhCCceeeeeccchHHHHH-HHHhC---CCc-ccCCccch-hhhhhhHhhhh--cCC
Confidence 5679999975 9999999999999999889999999877644 34442 222 22211111 22333333322 357
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|.++|.
T Consensus 99 ~d~vie~~G~ 108 (174)
T d1e3ia2 99 VDYSLDCAGT 108 (174)
T ss_dssp BSEEEESSCC
T ss_pred CcEEEEeccc
Confidence 9999999985
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=96.77 E-value=0.00075 Score=50.96 Aligned_cols=72 Identities=10% Similarity=0.120 Sum_probs=52.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
|.++|.|+ |-+|+.+|+.|.++| ..|++++.+++..+++ ...+ ..++.+|.++++.++++ .+ ...|
T Consensus 1 k~~iIiG~-G~~G~~la~~L~~~g-~~vvvid~d~~~~~~~----~~~~--~~~~~gd~~~~~~l~~a--~i----~~a~ 66 (134)
T d2hmva1 1 KQFAVIGL-GRFGGSIVKELHRMG-HEVLAVDINEEKVNAY----ASYA--THAVIANATEENELLSL--GI----RNFE 66 (134)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTT-CCCEEEESCHHHHHHT----TTTC--SEEEECCTTCTTHHHHH--TG----GGCS
T ss_pred CEEEEECC-CHHHHHHHHHHHHCC-CeEEEecCcHHHHHHH----HHhC--Ccceeeecccchhhhcc--CC----cccc
Confidence 46788876 899999999999999 5899999997776654 3333 35667899998877654 11 2467
Q ss_pred EEEEcc
Q 018819 167 VLVCNA 172 (350)
Q Consensus 167 ~lv~~A 172 (350)
.+|-..
T Consensus 67 ~vi~~~ 72 (134)
T d2hmva1 67 YVIVAI 72 (134)
T ss_dssp EEEECC
T ss_pred EEEEEc
Confidence 766544
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=96.75 E-value=0.0024 Score=52.74 Aligned_cols=78 Identities=19% Similarity=0.220 Sum_probs=52.5
Q ss_pred ccCCCEEEEEcC----------------CCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCC
Q 018819 83 TLRKGSVIITGA----------------SSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA 146 (350)
Q Consensus 83 ~l~~~~~lItGg----------------s~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs 146 (350)
+|+|+.+|||+| ||-.|.++|+.+..+|| .|.++.-.... .....+.. ..+.
T Consensus 3 dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga-~V~li~g~~~~---------~~p~~~~~--~~~~ 70 (223)
T d1u7za_ 3 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGA-NVTLVSGPVSL---------PTPPFVKR--VDVM 70 (223)
T ss_dssp TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTC-EEEEEECSCCC---------CCCTTEEE--EECC
T ss_pred ccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCC-chhhhhccccc---------Cccccccc--ceeh
Confidence 678888999887 78899999999999997 66655443210 01123333 3455
Q ss_pred CHHHHHHHHHHHHHcCCCCcEEEEccccC
Q 018819 147 SLDSVRQFVDTFRRSGRPLDVLVCNAAVY 175 (350)
Q Consensus 147 ~~~~v~~~~~~~~~~~g~id~lv~~Ag~~ 175 (350)
..+++...+... ....|++|++|.+.
T Consensus 71 t~~~m~~~~~~~---~~~~D~~i~aAAvs 96 (223)
T d1u7za_ 71 TALEMEAAVNAS---VQQQNIFIGCAAVA 96 (223)
T ss_dssp SHHHHHHHHHHH---GGGCSEEEECCBCC
T ss_pred hhHHHHHHHHhh---hccceeEeeeechh
Confidence 656665555443 34679999999985
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.59 E-value=0.0027 Score=51.29 Aligned_cols=81 Identities=15% Similarity=0.093 Sum_probs=54.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+|.+++|.|+ |++|...+......|+.+|+++++++++++.+. ++ |... ..|-.+. ++.+.+.++. ....
T Consensus 25 ~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~-~~---Ga~~---~~~~~~~-~~~~~i~~~t-~g~g 94 (195)
T d1kola2 25 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHAK-AQ---GFEI---ADLSLDT-PLHEQIAALL-GEPE 94 (195)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HT---TCEE---EETTSSS-CHHHHHHHHH-SSSC
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccchhhHhhh-hc---cccE---EEeCCCc-CHHHHHHHHh-CCCC
Confidence 5679999986 899999888888889889999999887765443 32 3322 1233332 3333333333 2346
Q ss_pred CcEEEEccccC
Q 018819 165 LDVLVCNAAVY 175 (350)
Q Consensus 165 id~lv~~Ag~~ 175 (350)
+|++|.+.|..
T Consensus 95 ~D~vid~vG~~ 105 (195)
T d1kola2 95 VDCAVDAVGFE 105 (195)
T ss_dssp EEEEEECCCTT
T ss_pred cEEEEECcccc
Confidence 99999999853
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.54 E-value=0.0029 Score=50.01 Aligned_cols=80 Identities=16% Similarity=0.132 Sum_probs=54.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHH-HHHHHHHHHHHcCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD-SVRQFVDTFRRSGR 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~-~v~~~~~~~~~~~g 163 (350)
+|.+++|.|+ ||+|...++.+...|+.+|+.+++++++++... ++ |... + .|.++.+ .+.+..... ..+
T Consensus 27 ~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~-~l---Ga~~-~--i~~~~~d~~~~~~~~~~--~~~ 96 (174)
T d1p0fa2 27 PGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI-EL---GATE-C--LNPKDYDKPIYEVICEK--TNG 96 (174)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH-HT---TCSE-E--ECGGGCSSCHHHHHHHH--TTS
T ss_pred CCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChHHHHHHHH-Hc---CCcE-E--EcCCCchhHHHHHHHHh--cCC
Confidence 5679999986 899999999999999889999999988876553 33 3322 2 2333222 123332222 235
Q ss_pred CCcEEEEcccc
Q 018819 164 PLDVLVCNAAV 174 (350)
Q Consensus 164 ~id~lv~~Ag~ 174 (350)
.+|++|-+.|.
T Consensus 97 G~d~vid~~g~ 107 (174)
T d1p0fa2 97 GVDYAVECAGR 107 (174)
T ss_dssp CBSEEEECSCC
T ss_pred CCcEEEEcCCC
Confidence 79999999875
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.52 E-value=0.0038 Score=49.13 Aligned_cols=79 Identities=22% Similarity=0.228 Sum_probs=52.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
++.+++|.|+ |++|...++.+...|+.+|+.+++++++.+.+.+ + +.. .++ |..+ +.++...+.. ....
T Consensus 32 ~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~-~---ga~-~~i--~~~~-~~~~~~~~~~--~~~g 100 (172)
T d1h2ba2 32 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER-L---GAD-HVV--DARR-DPVKQVMELT--RGRG 100 (172)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH-T---TCS-EEE--ETTS-CHHHHHHHHT--TTCC
T ss_pred CCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchhHHHHHHhh-c---ccc-eee--cCcc-cHHHHHHHhh--CCCC
Confidence 4668999886 9999999999988998888889998776554432 2 322 222 3332 3344443322 1236
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|.++|.
T Consensus 101 ~d~vid~~g~ 110 (172)
T d1h2ba2 101 VNVAMDFVGS 110 (172)
T ss_dssp EEEEEESSCC
T ss_pred ceEEEEecCc
Confidence 9999999985
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=96.52 E-value=0.019 Score=43.47 Aligned_cols=112 Identities=14% Similarity=0.057 Sum_probs=67.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHcC-CcEEEEEecC--hhHHHHHHHHhcc---CCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 88 SVIITGASSGLGLATAKALAETG-KWHIIMACRD--FLKAERAAKSAGM---AKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~G-a~~Vi~~~r~--~~~~~~~~~~l~~---~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
.+.|+|++|.+|..+|..+..+| +..+++++.+ .+..+....++.. ..........|.. +
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~---~----------- 67 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYE---D----------- 67 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGG---G-----------
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHH---H-----------
Confidence 47899999999999999999988 4478888854 2333322223321 2233444444432 1
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEe
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVG 225 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vS 225 (350)
...-|++|..||.... + .++. ...++.|. -+.+.+.+.+.+... .+.++.+|
T Consensus 68 ~~~aDiVvitaG~~~~--~--g~~R---~dl~~~N~----~I~~~i~~~i~~~~p-~~i~ivvt 119 (142)
T d1o6za1 68 TAGSDVVVITAGIPRQ--P--GQTR---IDLAGDNA----PIMEDIQSSLDEHND-DYISLTTS 119 (142)
T ss_dssp GTTCSEEEECCCCCCC--T--TCCH---HHHHHHHH----HHHHHHHHHHHTTCS-CCEEEECC
T ss_pred hhhcCEEEEecccccc--c--CCch---hhHHHHHH----HHHHHHHHHHHhcCC-CceEEEec
Confidence 1268999999997432 2 2333 33455553 455666776766542 45666664
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.45 E-value=0.01 Score=46.29 Aligned_cols=76 Identities=20% Similarity=0.157 Sum_probs=50.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+|.+++|.|+ |++|...++.+...|+ +|+++++++++.+.+ +++ |.+..+-.-+-.+. .....+.
T Consensus 27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a-~~l---Ga~~~i~~~~~~~~---------~~~~~~~ 91 (168)
T d1piwa2 27 PGKKVGIVGL-GGIGSMGTLISKAMGA-ETYVISRSSRKREDA-MKM---GADHYIATLEEGDW---------GEKYFDT 91 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTC-EEEEEESSSTTHHHH-HHH---TCSEEEEGGGTSCH---------HHHSCSC
T ss_pred CCCEEEEECC-CCcchhHHHHhhhccc-cccccccchhHHHHh-hcc---CCcEEeeccchHHH---------HHhhhcc
Confidence 4678999986 8999999988888997 788899988776654 333 33322221222211 1123457
Q ss_pred CcEEEEccccC
Q 018819 165 LDVLVCNAAVY 175 (350)
Q Consensus 165 id~lv~~Ag~~ 175 (350)
+|.++.+.+..
T Consensus 92 ~d~vi~~~~~~ 102 (168)
T d1piwa2 92 FDLIVVCASSL 102 (168)
T ss_dssp EEEEEECCSCS
T ss_pred cceEEEEecCC
Confidence 99999988764
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=96.42 E-value=0.018 Score=43.93 Aligned_cols=116 Identities=16% Similarity=0.089 Sum_probs=67.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcC-CcEEEEEecChhHHHHHHHHhc----cCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 87 GSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAG----MAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~G-a~~Vi~~~r~~~~~~~~~~~l~----~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
|.+.|+|+ |.+|..+|..|+.+| +..++++++++++.+....++. ...........|. ++
T Consensus 2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~---~~----------- 66 (146)
T d1hyha1 2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW---AA----------- 66 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG---GG-----------
T ss_pred CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCH---HH-----------
Confidence 46778895 899999999999988 4689999998776554444342 1222333333332 21
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEe
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVG 225 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vS 225 (350)
...-|++|..||.......-...+ -...++.| ..+.+.+.+.+.+.. +.+.+|++|
T Consensus 67 l~~adiVVitaG~~~~~~~~~g~~---R~~l~~~N----~~i~~~i~~~i~~~~-p~aivivvt 122 (146)
T d1hyha1 67 LADADVVISTLGNIKLQQDNPTGD---RFAELKFT----SSMVQSVGTNLKESG-FHGVLVVIS 122 (146)
T ss_dssp GTTCSEEEECCSCGGGTC----------CTTHHHH----HHHHHHHHHHHHHTT-CCSEEEECS
T ss_pred hccccEEEEeccccccccccCCcc---HHHHHHHH----HHHHHHHHHHHhhcC-CCeEEEEec
Confidence 125899999999753211000011 11223344 345566666666544 245666655
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=96.34 E-value=0.0016 Score=51.36 Aligned_cols=42 Identities=29% Similarity=0.458 Sum_probs=35.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHH
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA 127 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~ 127 (350)
++.++||+||+||+|...++.....|| +||.+.++.++.+.+
T Consensus 23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~ 64 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYL 64 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHH
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHH
Confidence 355799999999999999998888997 888888887665554
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.33 E-value=0.005 Score=48.19 Aligned_cols=74 Identities=23% Similarity=0.286 Sum_probs=51.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+|.+++|.|+ |+||...++.+...|+ ++++++++.++.+ ..+++. ... .+|..+.+... ....+
T Consensus 30 ~G~~VlI~Ga-G~vG~~a~qlak~~Ga-~~i~~~~~~~~~~-~a~~lG---ad~---~i~~~~~~~~~-------~~~~~ 93 (168)
T d1uufa2 30 PGKKVGVVGI-GGLGHMGIKLAHAMGA-HVVAFTTSEAKRE-AAKALG---ADE---VVNSRNADEMA-------AHLKS 93 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESSGGGHH-HHHHHT---CSE---EEETTCHHHHH-------TTTTC
T ss_pred CCCEEEEecc-chHHHHHHHHhhcccc-cchhhccchhHHH-HHhccC---CcE---EEECchhhHHH-------HhcCC
Confidence 4679999986 8999999998888997 6667777776654 334443 322 24666655322 22347
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|++|.+.|.
T Consensus 94 ~D~vid~~g~ 103 (168)
T d1uufa2 94 FDFILNTVAA 103 (168)
T ss_dssp EEEEEECCSS
T ss_pred Cceeeeeeec
Confidence 9999999885
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=96.33 E-value=0.0029 Score=49.68 Aligned_cols=47 Identities=21% Similarity=0.344 Sum_probs=41.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhc
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG 132 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~ 132 (350)
+++.++|.|+ ||.+++++..|.+.|+.+|.++.|+.++.+.+.+.+.
T Consensus 16 ~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~ 62 (167)
T d1npya1 16 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYG 62 (167)
T ss_dssp TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHT
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhh
Confidence 5678999987 8999999999999998899999999988888776653
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=96.32 E-value=0.0066 Score=47.67 Aligned_cols=80 Identities=15% Similarity=0.128 Sum_probs=53.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHH-HHHHHHHHHHcCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDS-VRQFVDTFRRSGR 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~-v~~~~~~~~~~~g 163 (350)
++.+++|.|+ ||+|...+..+...|+.+|+.+++++++++.+. ++ |... ++ |..+.++ +++...... .+
T Consensus 28 ~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~-~~---GAd~-~i--n~~~~~~~~~~~~~~~~--~~ 97 (175)
T d1cdoa2 28 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK-VF---GATD-FV--NPNDHSEPISQVLSKMT--NG 97 (175)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HT---TCCE-EE--CGGGCSSCHHHHHHHHH--TS
T ss_pred CCCEEEEEec-CCccchHHHHHHHHhhchheeecchHHHHHHHH-Hc---CCcE-EE--cCCCcchhHHHHHHhhc--cC
Confidence 5679999985 789999999999999889999999988765543 33 3322 22 3332221 223322222 24
Q ss_pred CCcEEEEcccc
Q 018819 164 PLDVLVCNAAV 174 (350)
Q Consensus 164 ~id~lv~~Ag~ 174 (350)
.+|+++.+.|.
T Consensus 98 G~d~vid~~G~ 108 (175)
T d1cdoa2 98 GVDFSLECVGN 108 (175)
T ss_dssp CBSEEEECSCC
T ss_pred CcceeeeecCC
Confidence 79999999985
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=96.31 E-value=0.021 Score=44.20 Aligned_cols=116 Identities=11% Similarity=0.078 Sum_probs=70.3
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcC-CcEEEEEecChhHHHHHHHHhcc----CCCceEEEEccCCCHHHHHHHHHHH
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGM----AKENYTIMHLDLASLDSVRQFVDTF 158 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~G-a~~Vi~~~r~~~~~~~~~~~l~~----~~~~v~~~~~Dvs~~~~v~~~~~~~ 158 (350)
++.+.+.|.|+ |.+|..+|..|+.+| +..+++++++++..+....++.+ .+........|..+
T Consensus 18 ~~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~----------- 85 (160)
T d1i0za1 18 VPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSV----------- 85 (160)
T ss_dssp CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGG-----------
T ss_pred CCCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhh-----------
Confidence 44567888896 999999999999998 46899999987666544444432 12222222233322
Q ss_pred HHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEec
Q 018819 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (350)
Q Consensus 159 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS 226 (350)
...-|++|..||.... + ..+.. ..+..|. .+.+.+.+.+.+... .+.+|++|-
T Consensus 86 ---~~~adiVVitAg~~~~--~--g~tR~---~l~~~N~----~i~~~i~~~i~~~~p-~aiiivvtN 138 (160)
T d1i0za1 86 ---TANSKIVVVTAGVRQQ--E--GESRL---NLVQRNV----NVFKFIIPQIVKYSP-DCIIIVVSN 138 (160)
T ss_dssp ---GTTCSEEEECCSCCCC--T--TCCGG---GGHHHHH----HHHHHHHHHHHHHCT-TCEEEECSS
T ss_pred ---cccccEEEEecCCccc--c--CcchH---HHHHHHH----HHHHHHHHHHHhcCC-CcEEEEeCC
Confidence 1268999999997532 1 22322 2334443 355666666655432 456666653
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=96.26 E-value=0.0026 Score=50.58 Aligned_cols=42 Identities=24% Similarity=0.413 Sum_probs=35.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHH
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA 127 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~ 127 (350)
++.++||+||+||+|...++.....|+ +||.++++.++.+.+
T Consensus 31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga-~Via~~~~~~k~~~~ 72 (177)
T d1o89a2 31 QDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYL 72 (177)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHH
T ss_pred CCCcEEEEEccccchHHHHHHHHHcCC-CeEEEecchhHHHHH
Confidence 345899999999999999999989997 888888887775544
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.17 E-value=0.033 Score=43.00 Aligned_cols=115 Identities=13% Similarity=0.149 Sum_probs=67.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcC-CcEEEEEecChhHHHHHHHHhcc----CCCceEEEEccCCCHHHHHHHHHHHH
Q 018819 85 RKGSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGM----AKENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~G-a~~Vi~~~r~~~~~~~~~~~l~~----~~~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
+...+.|+|+ |.+|..+|..|+.+| +..+++++++.+..+....++.. .+........|..
T Consensus 18 ~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~------------- 83 (159)
T d2ldxa1 18 SRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYN------------- 83 (159)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGG-------------
T ss_pred CCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchh-------------
Confidence 4446777886 999999999999988 45799999987766554444432 1222223333332
Q ss_pred HcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEec
Q 018819 160 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS 226 (350)
....-|++|..||...... .+..+ .++.|. .+.+.+.+.+.+... .+.++++|-
T Consensus 84 -~~~~adivvitag~~~~~~----~~R~d---ll~~N~----~i~~~i~~~i~~~~p-~~ivivvtN 137 (159)
T d2ldxa1 84 -VSANSKLVIITAGARMVSG----QTRLD---LLQRNV----AIMKAIVPGVIQNSP-DCKIIVVTN 137 (159)
T ss_dssp -GGTTEEEEEECCSCCCCTT----TCSSC---TTHHHH----HHHHHHTTTHHHHST-TCEEEECSS
T ss_pred -hhccccEEEEecccccCCC----CCHHH---HHHHHH----HHHHHHHHHHhccCC-CeEEEEeCC
Confidence 1136899999999854321 22211 233333 344555555554432 466666653
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.16 E-value=0.048 Score=41.31 Aligned_cols=115 Identities=16% Similarity=0.084 Sum_probs=63.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHc-C-CcEEEEEecChhHHHHHHHHhccCCCceEEE-EccCCCHHHHHHHHHHHHHcCCC
Q 018819 88 SVIITGASSGLGLATAKALAET-G-KWHIIMACRDFLKAERAAKSAGMAKENYTIM-HLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~-G-a~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~-~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.+.|+|++|.+|.++|..|+.+ + +..+++.+..+ ..+....++.......... ..+-.+.+++. .
T Consensus 2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~-----------~ 69 (145)
T d2cmda1 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPALE-----------G 69 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-THHHHHHHHHTSCSSCEEEEECSSCCHHHHT-----------T
T ss_pred EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cchhHHHHHHCCccccCCcEEEcCCCccccC-----------C
Confidence 5789999999999999988643 4 46899998764 3333333443322222111 12233333211 5
Q ss_pred CcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEec
Q 018819 165 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (350)
Q Consensus 165 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS 226 (350)
-|++|..||.... + ..+.. ..+..|..-. +...+.+.+.. +.+.+|++|.
T Consensus 70 aDvvvitaG~~~k--~--g~~R~---dl~~~N~~i~----~~v~~~i~~~~-p~aivivvtN 119 (145)
T d2cmda1 70 ADVVLISAGVRRK--P--GMDRS---DLFNVNAGIV----KNLVQQVAKTC-PKACIGIITN 119 (145)
T ss_dssp CSEEEECCSCCCC--T--TCCGG---GGHHHHHHHH----HHHHHHHHHHC-TTSEEEECSS
T ss_pred CCEEEECCCccCC--C--Ccchh---hHHHHHHHHH----HHHHHHHHhhC-CCcEEEEccC
Confidence 7999999998532 2 22333 2455664433 44444444332 1356776664
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.09 E-value=0.042 Score=41.64 Aligned_cols=102 Identities=20% Similarity=0.116 Sum_probs=59.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHcC-CcEEEEEecChh--HHHHHHHHhc----cCCCce--EEEEccCCCHHHHHHHHHHH
Q 018819 88 SVIITGASSGLGLATAKALAETG-KWHIIMACRDFL--KAERAAKSAG----MAKENY--TIMHLDLASLDSVRQFVDTF 158 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~G-a~~Vi~~~r~~~--~~~~~~~~l~----~~~~~v--~~~~~Dvs~~~~v~~~~~~~ 158 (350)
.+.|+||+|.+|..+|..|+.+| +..+++++++.. +.+....++. .....+ .....+ |.+
T Consensus 2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~--d~~--------- 70 (145)
T d1hyea1 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDE--NLR--------- 70 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETT--CGG---------
T ss_pred EEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcc--hHH---------
Confidence 48899999999999999999998 568999998742 2332222222 122222 222221 111
Q ss_pred HHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhc
Q 018819 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQ 213 (350)
Q Consensus 159 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~ 213 (350)
....-|++|.+||..... ..+.. ..++.|..= .+.+.+.+.+
T Consensus 71 --~l~~aDvVVitAG~~~~~----g~sR~---dl~~~Na~i----v~~i~~~i~~ 112 (145)
T d1hyea1 71 --IIDESDVVIITSGVPRKE----GMSRM---DLAKTNAKI----VGKYAKKIAE 112 (145)
T ss_dssp --GGTTCSEEEECCSCCCCT----TCCHH---HHHHHHHHH----HHHHHHHHHH
T ss_pred --HhccceEEEEecccccCC----CCChh---hhhhhhHHH----HHHHHHHHhc
Confidence 123689999999974321 23433 345556543 4444444443
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=96.04 E-value=0.013 Score=44.81 Aligned_cols=75 Identities=12% Similarity=0.057 Sum_probs=55.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcE
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 167 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~ 167 (350)
.++|.|. |-+|..+++.|.++| ..|+++..+++......+.... ..+.++..|.+|++.++++- ....|.
T Consensus 5 HiII~G~-g~~g~~l~~~L~~~~-~~v~vId~d~~~~~~~~~~~~~--~~~~vi~Gd~~d~~~L~~a~------i~~a~~ 74 (153)
T d1id1a_ 5 HFIVCGH-SILAINTILQLNQRG-QNVTVISNLPEDDIKQLEQRLG--DNADVIPGDSNDSSVLKKAG------IDRCRA 74 (153)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTT-CCEEEEECCCHHHHHHHHHHHC--TTCEEEESCTTSHHHHHHHT------TTTCSE
T ss_pred EEEEECC-CHHHHHHHHHHHHcC-CCEEEEeccchhHHHHHHHhhc--CCcEEEEccCcchHHHHHhc------cccCCE
Confidence 5778887 799999999999999 5888888887665555544432 35788899999988766541 235677
Q ss_pred EEEcc
Q 018819 168 LVCNA 172 (350)
Q Consensus 168 lv~~A 172 (350)
+|...
T Consensus 75 vi~~~ 79 (153)
T d1id1a_ 75 ILALS 79 (153)
T ss_dssp EEECS
T ss_pred EEEcc
Confidence 77553
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=95.94 E-value=0.014 Score=44.27 Aligned_cols=111 Identities=16% Similarity=0.091 Sum_probs=60.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHcC-CcEEEEEecChhHHHHHHHHhccC---CCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 88 SVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMA---KENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~G-a~~Vi~~~r~~~~~~~~~~~l~~~---~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
.+.|.|+ |.+|..+|..++.+| +..+++++++++..+....++.+. .........| .+ ...
T Consensus 3 KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~---~~-----------~~~ 67 (142)
T d1y6ja1 3 KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGD---YS-----------DVK 67 (142)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--C---GG-----------GGT
T ss_pred eEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCc---HH-----------HhC
Confidence 3566686 999999999999987 357999998876654444455432 1122222221 11 123
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEe
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVG 225 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vS 225 (350)
.-|++|..||.... + ..+. ...+..|.. +.+.+.+.+.+.. +.+.++++|
T Consensus 68 ~adivvitag~~~~--~--~~~r---~~l~~~N~~----i~~~i~~~i~~~~-p~ai~ivvt 117 (142)
T d1y6ja1 68 DCDVIVVTAGANRK--P--GETR---LDLAKKNVM----IAKEVTQNIMKYY-NHGVILVVS 117 (142)
T ss_dssp TCSEEEECCCC----------CH---HHHHHHHHH----HHHHHHHHHHHHC-CSCEEEECS
T ss_pred CCceEEEecccccC--c--Ccch---hHHhhHHHH----HHHHHHHHhhccC-CCceEEEec
Confidence 67999999997532 1 1222 334555553 4455555555433 135666654
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=95.92 E-value=0.034 Score=42.60 Aligned_cols=116 Identities=11% Similarity=0.035 Sum_probs=62.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCc--------EEEEEecChhHHHHHHHHhccC-CCceEEEEccCCCHHHHHHHHHHH
Q 018819 88 SVIITGASSGLGLATAKALAETGKW--------HIIMACRDFLKAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDTF 158 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~--------~Vi~~~r~~~~~~~~~~~l~~~-~~~v~~~~~Dvs~~~~v~~~~~~~ 158 (350)
.+.|+||+|.+|..++..|+..+.. +++...++.+..+....++... ......+...-.+.++
T Consensus 6 KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 77 (154)
T d1y7ta1 6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVA-------- 77 (154)
T ss_dssp EEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHH--------
T ss_pred EEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhh--------
Confidence 6899999999999999999986521 2223334445555444444322 1223333332222211
Q ss_pred HHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEe
Q 018819 159 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVG 225 (350)
Q Consensus 159 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vS 225 (350)
+...|++|..+|.... ..++.+++ +..|+. +.+.+.+.+.+...+.+.|+.+|
T Consensus 78 ---~~~advViitaG~~~~----pg~~r~dl---~~~N~~----i~~~~~~~i~k~a~~~~~vivvs 130 (154)
T d1y7ta1 78 ---FKDADYALLVGAAPRK----AGMERRDL---LQVNGK----IFTEQGRALAEVAKKDVKVLVVG 130 (154)
T ss_dssp ---TTTCSEEEECCCCCCC----TTCCHHHH---HHHHHH----HHHHHHHHHHHHSCTTCEEEECS
T ss_pred ---cccccEEEeecCcCCC----CCCcHHHH---HHHHHH----HHHHHHHHHHHhCCCCcEEEEec
Confidence 2368999999998532 23455443 444544 44444454444211124555554
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=95.86 E-value=0.022 Score=41.15 Aligned_cols=38 Identities=24% Similarity=0.403 Sum_probs=32.6
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~ 121 (350)
.+++||++||.|| |.+|..-++.|.+.|| +|++.+...
T Consensus 8 l~l~~k~vlVvG~-G~va~~ka~~ll~~ga-~v~v~~~~~ 45 (113)
T d1pjqa1 8 CQLRDRDCLIVGG-GDVAERKARLLLEAGA-RLTVNALTF 45 (113)
T ss_dssp ECCBTCEEEEECC-SHHHHHHHHHHHHTTB-EEEEEESSC
T ss_pred EEeCCCEEEEECC-CHHHHHHHHHHHHCCC-eEEEEeccC
Confidence 4689999999998 6799999999999997 777776653
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=95.83 E-value=0.053 Score=41.74 Aligned_cols=81 Identities=14% Similarity=0.171 Sum_probs=54.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhc----------cCCCceEEEEccCCCHHHHHHHHHH
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG----------MAKENYTIMHLDLASLDSVRQFVDT 157 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~----------~~~~~v~~~~~Dvs~~~~v~~~~~~ 157 (350)
.+.|.|. |-+|..+|+.|.+.| +.|+.++|+.+..+++.+.-. -...++.++.+ ..+++++++++
T Consensus 2 kI~iIG~-G~mG~~lA~~l~~~g-~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilav---p~~~~~~vl~~ 76 (165)
T d2f1ka2 2 KIGVVGL-GLIGASLAGDLRRRG-HYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCT---PIQLILPTLEK 76 (165)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECS---CHHHHHHHHHH
T ss_pred EEEEEee-cHHHHHHHHHHHHCC-CEEEEEECCchHHHHHHHhhccceeeeecccccccccccccC---cHhhhhhhhhh
Confidence 3666765 999999999999999 699999999877666544210 01233444333 36778888888
Q ss_pred HHHcCCCCcEEEEccc
Q 018819 158 FRRSGRPLDVLVCNAA 173 (350)
Q Consensus 158 ~~~~~g~id~lv~~Ag 173 (350)
+.....+=.++++.++
T Consensus 77 l~~~l~~~~iv~~~~s 92 (165)
T d2f1ka2 77 LIPHLSPTAIVTDVAS 92 (165)
T ss_dssp HGGGSCTTCEEEECCS
T ss_pred hhhhcccccceeeccc
Confidence 8766555555655543
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=95.83 E-value=0.069 Score=41.77 Aligned_cols=103 Identities=10% Similarity=-0.091 Sum_probs=56.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC------cEEEEEecCh--hHHHHHHHHhccCCC-ce-EEEEccCCCHHHHHHHHHH
Q 018819 88 SVIITGASSGLGLATAKALAETGK------WHIIMACRDF--LKAERAAKSAGMAKE-NY-TIMHLDLASLDSVRQFVDT 157 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga------~~Vi~~~r~~--~~~~~~~~~l~~~~~-~v-~~~~~Dvs~~~~v~~~~~~ 157 (350)
.+.||||+|.||..++..|++... -.+.+.+.+. ..++....++..... .. ....+ ++.. +
T Consensus 26 kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~--~~~~---~---- 96 (175)
T d7mdha1 26 NIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIG--IDPY---E---- 96 (175)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEE--SCHH---H----
T ss_pred EEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCcccc--ccch---h----
Confidence 699999999999999999987431 1344455443 333444434432211 11 11212 1211 1
Q ss_pred HHHcCCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhc
Q 018819 158 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQ 213 (350)
Q Consensus 158 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~ 213 (350)
.+...|++|..+|..... .++.++ .+..|.. +.+...+.+.+
T Consensus 97 ---~~~~aDvVvi~ag~~rkp----g~tR~D---ll~~N~~----I~k~~~~~i~~ 138 (175)
T d7mdha1 97 ---VFEDVDWALLIGAKPRGP----GMERAA---LLDINGQ----IFADQGKALNA 138 (175)
T ss_dssp ---HTTTCSEEEECCCCCCCT----TCCHHH---HHHHHHH----HHHHHHHHHHH
T ss_pred ---hccCCceEEEeeccCCCC----CCcHHH---HHHHHHH----HHHHHHHHHHh
Confidence 123799999999985331 345544 4555643 44444554544
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.78 E-value=0.028 Score=43.46 Aligned_cols=76 Identities=20% Similarity=0.159 Sum_probs=48.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
++.+++|.|+ |++|...++.+...|+ +|+.+++++++.+.. +++ |... + .|.++.+..+.+.+ ..+.
T Consensus 27 ~g~~VlV~Ga-G~vG~~~~~~ak~~G~-~Vi~~~~~~~~~~~a-~~~---Ga~~-~--i~~~~~~~~~~~~~----~~~g 93 (166)
T d1llua2 27 PGQWVAISGI-GGLGHVAVQYARAMGL-HVAAIDIDDAKLELA-RKL---GASL-T--VNARQEDPVEAIQR----DIGG 93 (166)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH-HHT---TCSE-E--EETTTSCHHHHHHH----HHSS
T ss_pred CCCEEEEeec-cccHHHHHHHHHHcCC-ccceecchhhHHHhh-hcc---Cccc-c--ccccchhHHHHHHH----hhcC
Confidence 4668999886 9999999998888995 899999998776544 333 3332 2 34454444444332 2234
Q ss_pred CcEEEEccc
Q 018819 165 LDVLVCNAA 173 (350)
Q Consensus 165 id~lv~~Ag 173 (350)
.+.+|-+++
T Consensus 94 ~~~~i~~~~ 102 (166)
T d1llua2 94 AHGVLVTAV 102 (166)
T ss_dssp EEEEEECCS
T ss_pred Ccccccccc
Confidence 555555544
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=95.75 E-value=0.048 Score=41.13 Aligned_cols=112 Identities=18% Similarity=0.074 Sum_probs=63.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccC----CCceEEEE-ccCCCHHHHHHHHHHHHHc
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA----KENYTIMH-LDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~----~~~v~~~~-~Dvs~~~~v~~~~~~~~~~ 161 (350)
+.+.|+|+ |.+|.++|..|+.++...+++++.+++..+.....+... +....+.. .|..+
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~-------------- 66 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYAD-------------- 66 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGG--------------
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHH--------------
Confidence 35677786 999999999999988658999998776655444444221 11222222 22221
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEe
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVG 225 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vS 225 (350)
...-|++|.+||..... ..+. ...+..|. .+.+...+.+.+... .+.++++|
T Consensus 67 ~~~advvvitag~~~~~----~~~r---~dl~~~N~----~i~~~i~~~i~k~~p-~aivivvt 118 (142)
T d1uxja1 67 TANSDVIVVTSGAPRKP----GMSR---EDLIKVNA----DITRACISQAAPLSP-NAVIIMVN 118 (142)
T ss_dssp GTTCSEEEECCSCC----------------CHHHHH----HHHHHHHHHHGGGCT-TCEEEECS
T ss_pred hcCCCEEEEeeeccCCc----Ccch---hHHHhHHH----HHHHHHHHHHhccCC-CceEEEeC
Confidence 12579999999975321 1222 23344554 456667776666442 45555544
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=95.74 E-value=0.016 Score=44.31 Aligned_cols=80 Identities=15% Similarity=0.167 Sum_probs=52.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
.-+++.|.||.|-+|..+|+.|.+.| +.|.+.+|+.....+... .+.++.....++ .++...+.++.....+
T Consensus 8 ~~~kI~iIGg~G~mG~~la~~L~~~G-~~V~~~d~~~~~~~~~~~----~~~~~v~~~~~~---~~~~~v~~~~~~~~~~ 79 (152)
T d2pv7a2 8 DIHKIVIVGGYGKLGGLFARYLRASG-YPISILDREDWAVAESIL----ANADVVIVSVPI---NLTLETIERLKPYLTE 79 (152)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTT-CCEEEECTTCGGGHHHHH----TTCSEEEECSCG---GGHHHHHHHHGGGCCT
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcC-CCcEecccccccccchhh----hhccccccccch---hhheeeeecccccccC
Confidence 44589999999999999999999999 699999998654433221 123444444443 4555666666554433
Q ss_pred CcEEEEcc
Q 018819 165 LDVLVCNA 172 (350)
Q Consensus 165 id~lv~~A 172 (350)
=.+++..+
T Consensus 80 ~~iiiD~~ 87 (152)
T d2pv7a2 80 NMLLADLT 87 (152)
T ss_dssp TSEEEECC
T ss_pred CceEEEec
Confidence 23454444
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=95.72 E-value=0.05 Score=40.90 Aligned_cols=111 Identities=22% Similarity=0.177 Sum_probs=65.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHcC-CcEEEEEecChhHHHHHHHHhcc---CCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 88 SVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGM---AKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~G-a~~Vi~~~r~~~~~~~~~~~l~~---~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
.+.|.|+ |.+|..+|..++.++ +..+++.+.+++.++....++.. ..........|. ++ ..
T Consensus 2 KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~---~~-----------~~ 66 (140)
T d1a5za1 2 KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDY---AD-----------LK 66 (140)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCG---GG-----------GT
T ss_pred EEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcH---HH-----------hc
Confidence 3667786 899999999998887 45899999987666544444321 112333333332 21 12
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEe
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVG 225 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vS 225 (350)
.-|++|.+||..... ..+..+ .+..|. .+.+.+.+.+.+.. +.+.++++|
T Consensus 67 ~adivvitag~~~~~----g~~r~d---l~~~N~----~I~~~i~~~i~~~~-p~aivivvt 116 (140)
T d1a5za1 67 GSDVVIVAAGVPQKP----GETRLQ---LLGRNA----RVMKEIARNVSKYA-PDSIVIVVT 116 (140)
T ss_dssp TCSEEEECCCCCCCS----SCCHHH---HHHHHH----HHHHHHHHHHHHHC-TTCEEEECS
T ss_pred CCCEEEEecccccCC----Ccchhh---hhcccc----chHHHHHHHHHhcC-CCcEEEEeC
Confidence 579999999985321 233322 344453 34555555555543 245666654
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=95.65 E-value=0.038 Score=42.38 Aligned_cols=79 Identities=14% Similarity=0.055 Sum_probs=50.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhcc----CCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM----AKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~----~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
+.+.+.|.|+ |.+|..+|..|+..+...+++++.+++.++.....+.. .+........ ++.+ +.+
T Consensus 6 k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~--~~~~---~~~----- 74 (154)
T d1pzga1 6 RRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAE--YSYE---AAL----- 74 (154)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEE--CSHH---HHH-----
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEecc--Cchh---hhh-----
Confidence 4567888897 99999999999998855899999887655544444322 1112112111 1221 111
Q ss_pred cCCCCcEEEEccccCC
Q 018819 161 SGRPLDVLVCNAAVYL 176 (350)
Q Consensus 161 ~~g~id~lv~~Ag~~~ 176 (350)
..-|++|..+|...
T Consensus 75 --~~adiVvitag~~~ 88 (154)
T d1pzga1 75 --TGADCVIVTAGLTK 88 (154)
T ss_dssp --TTCSEEEECCSCSS
T ss_pred --cCCCeEEEeccccc
Confidence 26899999999854
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=95.59 E-value=0.076 Score=40.39 Aligned_cols=117 Identities=14% Similarity=0.141 Sum_probs=67.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhcc----CCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM----AKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~----~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
.+.|.|+ |.+|..+|..|..++...+++++++++..+....++.+ .+.+......| +.+ ...
T Consensus 5 KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~--~~~-----------~~~ 70 (150)
T d1t2da1 5 KIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSN--TYD-----------DLA 70 (150)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEEC--CGG-----------GGT
T ss_pred eEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecc--ccc-----------ccC
Confidence 5777885 99999999999999977999999987665554444432 12233333322 111 123
Q ss_pred CCcEEEEccccCCCCCCC-CCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEec
Q 018819 164 PLDVLVCNAAVYLPTAKE-PTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~-~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS 226 (350)
.-|++|.++|.....+.. .+.+. ...+..|. .+.+.+.+.+.+.. +.+.++++|-
T Consensus 71 ~advvvitag~~~~~g~~~~~~~R---~~l~~~N~----~iv~~i~~~i~~~~-p~aivivvtN 126 (150)
T d1t2da1 71 GADVVIVTAGFTKAPGKSDKEWNR---DDLLPLNN----KIMIEIGGHIKKNC-PNAFIIVVTN 126 (150)
T ss_dssp TCSEEEECCSCSSCTTCCSTTCCG---GGGHHHHH----HHHHHHHHHHHHHC-TTSEEEECSS
T ss_pred CCcEEEEecccccCCCCCccccch---hHHHHHHH----HHHHHHHHHHHhcC-CCeEEEEecC
Confidence 689999999975432211 11112 22344554 34455555554433 2356666653
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.46 E-value=0.011 Score=46.55 Aligned_cols=47 Identities=36% Similarity=0.446 Sum_probs=39.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhc
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG 132 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~ 132 (350)
+++||.+||.|+ ||.+++++..|.+.| +|.+..|+.++.+++.+.+.
T Consensus 15 ~~~~k~vlIlGa-GG~arai~~aL~~~~--~i~I~nR~~~ka~~l~~~~~ 61 (177)
T d1nvta1 15 RVKDKNIVIYGA-GGAARAVAFELAKDN--NIIIANRTVEKAEALAKEIA 61 (177)
T ss_dssp CCCSCEEEEECC-SHHHHHHHHHHTSSS--EEEEECSSHHHHHHHHHHHH
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHcccc--ceeeehhhhhHHHHHHHHHH
Confidence 468899999986 789999999997665 89999999988888776663
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.44 E-value=0.034 Score=42.89 Aligned_cols=41 Identities=24% Similarity=0.183 Sum_probs=33.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHH
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA 127 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~ 127 (350)
++.+++|.|+ |+||...++.+...|+ +|+++++++++.+..
T Consensus 27 ~g~~vlv~G~-G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~ 67 (168)
T d1rjwa2 27 PGEWVAIYGI-GGLGHVAVQYAKAMGL-NVVAVDIGDEKLELA 67 (168)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTC-EEEEECSCHHHHHHH
T ss_pred CCCEEEEeec-ccchhhhhHHHhcCCC-eEeccCCCHHHhhhh
Confidence 4568899875 9999999998889996 899999887776544
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=95.43 E-value=0.12 Score=38.96 Aligned_cols=112 Identities=17% Similarity=0.169 Sum_probs=64.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHcC-CcEEEEEecChhHHHHHHHHhccC---CCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 88 SVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMA---KENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~G-a~~Vi~~~r~~~~~~~~~~~l~~~---~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
.+.|+|+ |.+|.++|..|+.+| +..+++.+++++..+....++... .........+ +.++ ..
T Consensus 3 Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~--~~~~-----------~~ 68 (143)
T d1llda1 3 KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSD--DPEI-----------CR 68 (143)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEES--CGGG-----------GT
T ss_pred EEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCC--CHHH-----------hh
Confidence 4667786 999999999999988 457999999886655443334321 1122222221 1111 12
Q ss_pred CCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEe
Q 018819 164 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVG 225 (350)
Q Consensus 164 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vS 225 (350)
.-|++|..||.... + ..+.. ..+..|.. +.+.+.+.+.+.. +.+.++++|
T Consensus 69 daDvVVitaG~~~~--~--g~~R~---dl~~~N~~----i~~~i~~~i~~~~-p~ai~ivvt 118 (143)
T d1llda1 69 DADMVVITAGPRQK--P--GQSRL---ELVGATVN----ILKAIMPNLVKVA-PNAIYMLIT 118 (143)
T ss_dssp TCSEEEECCCCCCC--T--TCCHH---HHHHHHHH----HHHHHHHHHHHHC-TTSEEEECC
T ss_pred CCcEEEEecccccC--C--CCchh---hhhhhhHH----HHHHHHHHHHhhC-CCeEEEEeC
Confidence 57999999997532 1 23443 34555543 4444445444433 135555554
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=95.37 E-value=0.03 Score=43.91 Aligned_cols=84 Identities=11% Similarity=0.134 Sum_probs=59.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhcc---------------CCCceEEEEccCCCHHHHH
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM---------------AKENYTIMHLDLASLDSVR 152 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~---------------~~~~v~~~~~Dvs~~~~v~ 152 (350)
.+-|.|- |-+|..+|+.|++.| +.|++.+|+.++.+++.+.-.. .-.....+...+.+.+.+.
T Consensus 4 nIg~IGl-G~MG~~mA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~ 81 (176)
T d2pgda2 4 DIALIGL-AVMGQNLILNMNDHG-FVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVD 81 (176)
T ss_dssp SEEEECC-SHHHHHHHHHHHHTT-CCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHH
T ss_pred cEEEEeE-hHHHHHHHHHHHHCC-CeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHH
Confidence 5667775 899999999999999 6999999999888776553110 0012234445566778888
Q ss_pred HHHHHHHHcCCCCcEEEEccc
Q 018819 153 QFVDTFRRSGRPLDVLVCNAA 173 (350)
Q Consensus 153 ~~~~~~~~~~g~id~lv~~Ag 173 (350)
...+.+.....+=+++|.+.-
T Consensus 82 ~v~~~l~~~~~~g~iiid~sT 102 (176)
T d2pgda2 82 NFIEKLVPLLDIGDIIIDGGN 102 (176)
T ss_dssp HHHHHHHHHCCTTCEEEECSC
T ss_pred HHHHHHHhccccCcEEEecCc
Confidence 888887776655567776643
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=95.24 E-value=0.031 Score=46.35 Aligned_cols=37 Identities=32% Similarity=0.492 Sum_probs=33.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
.+++++|+|.|+ ||+|..++..|+..|..++.+++.+
T Consensus 27 kL~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D 63 (247)
T d1jw9b_ 27 ALKDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFD 63 (247)
T ss_dssp HHHHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred HHhCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCc
Confidence 467889999995 8999999999999999899998864
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=95.18 E-value=0.13 Score=38.63 Aligned_cols=75 Identities=15% Similarity=0.076 Sum_probs=48.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHcC-CcEEEEEecChhHHHHHHHHhccC----CCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 88 SVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMA----KENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~G-a~~Vi~~~r~~~~~~~~~~~l~~~----~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.+.|+|+ |.+|..++..|+..| +..+++++.+++..+.....+... ..+..+... .|.++ .
T Consensus 2 KI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~--~~~~~-----------~ 67 (142)
T d1guza1 2 KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS--NDYAD-----------T 67 (142)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE--SCGGG-----------G
T ss_pred EEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEec--CCHHH-----------h
Confidence 3677796 999999999999988 468999999876655443333221 223333322 22221 1
Q ss_pred CCCcEEEEccccCC
Q 018819 163 RPLDVLVCNAAVYL 176 (350)
Q Consensus 163 g~id~lv~~Ag~~~ 176 (350)
..-|++|.+||...
T Consensus 68 ~dadvvvitag~~~ 81 (142)
T d1guza1 68 ANSDIVIITAGLPR 81 (142)
T ss_dssp TTCSEEEECCSCCC
T ss_pred cCCeEEEEEEecCC
Confidence 26899999999853
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=95.11 E-value=0.01 Score=41.39 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=31.4
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~ 121 (350)
+++||+++|.|. |.-|+++|+.|.++|+ +|++.+.+.
T Consensus 2 ~~~~K~v~ViGl-G~sG~s~a~~L~~~g~-~v~~~D~~~ 38 (93)
T d2jfga1 2 DYQGKNVVIIGL-GLTGLSCVDFFLARGV-TPRVMDTRM 38 (93)
T ss_dssp CCTTCCEEEECC-SHHHHHHHHHHHHTTC-CCEEEESSS
T ss_pred CcCCCEEEEEeE-CHHHHHHHHHHHHCCC-EEEEeeCCc
Confidence 468999999987 7789999999999996 788777643
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.10 E-value=0.12 Score=39.65 Aligned_cols=39 Identities=21% Similarity=0.337 Sum_probs=34.4
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK 123 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~ 123 (350)
.+.||+++|.|- |-||+.+|+.|...|+ +|+++..++-+
T Consensus 21 ~l~Gk~v~V~Gy-G~iG~g~A~~~rg~G~-~V~v~e~dp~~ 59 (163)
T d1li4a1 21 MIAGKVAVVAGY-GDVGKGCAQALRGFGA-RVIITEIDPIN 59 (163)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSCHHH
T ss_pred eecCCEEEEecc-ccccHHHHHHHHhCCC-eeEeeecccch
Confidence 478999999985 6899999999999996 99999998644
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=94.92 E-value=0.026 Score=44.15 Aligned_cols=43 Identities=19% Similarity=0.110 Sum_probs=37.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHH
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS 130 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~ 130 (350)
+|++.|.|+ |.+|.++|..|+++| +.|.+++|+++..+...+.
T Consensus 1 sk~iaIiGa-G~~G~~~A~~l~~~G-~~V~~~~r~~~~~~~~~~~ 43 (184)
T d1bg6a2 1 SKTYAVLGL-GNGGHAFAAYLALKG-QSVLAWDIDAQRIKEIQDR 43 (184)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHH
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHc
Confidence 368999998 899999999999999 5999999998777766543
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=94.63 E-value=0.089 Score=42.06 Aligned_cols=76 Identities=16% Similarity=0.207 Sum_probs=58.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
+++|+++|=.|++.|. ++..++.+|+.+|+.++.+...++.+.+.++..+.+..++.+|+.+. .
T Consensus 44 dl~g~~vLDlg~GtG~---l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~-------------~ 107 (201)
T d1wy7a1 44 DIEGKVVADLGAGTGV---LSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF-------------N 107 (201)
T ss_dssp SSTTCEEEEETCTTCH---HHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC-------------C
T ss_pred CCCCCEEEECcCcchH---HHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh-------------C
Confidence 5788999988887662 23345677877999999998888888777777778889999897442 3
Q ss_pred CCCcEEEEcccc
Q 018819 163 RPLDVLVCNAAV 174 (350)
Q Consensus 163 g~id~lv~~Ag~ 174 (350)
+++|.||.|.-.
T Consensus 108 ~~fD~Vi~nPP~ 119 (201)
T d1wy7a1 108 SRVDIVIMNPPF 119 (201)
T ss_dssp CCCSEEEECCCC
T ss_pred CcCcEEEEcCcc
Confidence 589999998754
|
| >d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Phosphopantothenoylcysteine synthetase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.58 E-value=0.035 Score=47.34 Aligned_cols=30 Identities=20% Similarity=0.262 Sum_probs=22.8
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCcEEEEEec
Q 018819 89 VIITGASSGLGLATAKALAETGKWHIIMACR 119 (350)
Q Consensus 89 ~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r 119 (350)
++=--.||-.|.++|+.+..+|+ .|+++.+
T Consensus 39 ~ItN~SSGk~G~alA~~~~~~Ga-~V~li~g 68 (290)
T d1p9oa_ 39 FLDNFSSGRRGATSAEAFLAAGY-GVLFLYR 68 (290)
T ss_dssp EEEECCCCHHHHHHHHHHHHTTC-EEEEEEE
T ss_pred EeCCCCchHHHHHHHHHHHHcCC-EEEEEec
Confidence 34344567799999999999997 6766644
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=94.45 E-value=0.043 Score=44.03 Aligned_cols=43 Identities=26% Similarity=0.354 Sum_probs=36.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA 127 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~ 127 (350)
+++|++++|-| .|.+|..+|+.|.+.|+ +|++.+.+.......
T Consensus 24 ~L~gk~v~IqG-~G~VG~~~A~~L~~~Ga-kvvv~d~d~~~~~~~ 66 (201)
T d1c1da1 24 SLDGLTVLVQG-LGAVGGSLASLAAEAGA-QLLVADTDTERVAHA 66 (201)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHH
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCC-EEEEecchHHHHHHH
Confidence 57999999997 68899999999999996 899888887665544
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.24 E-value=0.042 Score=43.76 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=35.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHh
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA 131 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l 131 (350)
|.+.|.|+ |-+|..+|..++..| +.|++.+++.+.++...+.+
T Consensus 5 kkvaViGa-G~mG~~iA~~~a~~G-~~V~l~D~~~~~l~~a~~~i 47 (192)
T d1f0ya2 5 KHVTVIGG-GLMGAGIAQVAAATG-HTVVLVDQTEDILAKSKKGI 47 (192)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHHH
T ss_pred EEEEEECc-CHHHHHHHHHHHhCC-CcEEEEECChHHHHHHHhhH
Confidence 47888998 789999999999999 69999999987766554443
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.23 E-value=0.17 Score=37.88 Aligned_cols=111 Identities=13% Similarity=0.009 Sum_probs=64.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHcC-CcEEEEEecChhHHHHHHHHhcc----CCCceEEEEc-cCCCHHHHHHHHHHHHHc
Q 018819 88 SVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGM----AKENYTIMHL-DLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~G-a~~Vi~~~r~~~~~~~~~~~l~~----~~~~v~~~~~-Dvs~~~~v~~~~~~~~~~ 161 (350)
.+.|.|+ |.+|..+|..|+.+| +..+++++.+++..+....++.+ .......... |. ++
T Consensus 2 KI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~---~~----------- 66 (142)
T d1ojua1 2 KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY---SL----------- 66 (142)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCG---GG-----------
T ss_pred EEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCH---HH-----------
Confidence 4667786 999999999999887 45799999987665544333321 1222223322 32 11
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEe
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVG 225 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vS 225 (350)
...-|++|..||..... ..+. ...+..|. .+.+.+.+.+.+... .+.++++|
T Consensus 67 ~~~adiVvitag~~~~~----g~~r---~~l~~~n~----~i~~~i~~~i~~~~p-~aivivvt 118 (142)
T d1ojua1 67 LKGSEIIVVTAGLARKP----GMTR---LDLAHKNA----GIIKDIAKKIVENAP-ESKILVVT 118 (142)
T ss_dssp GTTCSEEEECCCCCCCS----SCCH---HHHHHHHH----HHHHHHHHHHHTTST-TCEEEECS
T ss_pred hccccEEEEeccccCCC----CCch---HHHHHHhh----HHHHHHHHHHHhhCC-CcEEEEec
Confidence 12589999999974321 2333 23344443 345555666655442 45566554
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=94.17 E-value=0.09 Score=40.30 Aligned_cols=83 Identities=16% Similarity=0.229 Sum_probs=53.6
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccC-------CCceEEEEccCCCHHHHHHHH---HHH
Q 018819 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-------KENYTIMHLDLASLDSVRQFV---DTF 158 (350)
Q Consensus 89 ~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~-------~~~v~~~~~Dvs~~~~v~~~~---~~~ 158 (350)
+-|.| .|-+|..+|+.|+++| +.|++.+|+.+..+++.+.-... -.+..++-+=+.+.++++.++ +.+
T Consensus 3 IgiIG-lG~MG~~~A~~L~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~ 80 (161)
T d1vpda2 3 VGFIG-LGIMGKPMSKNLLKAG-YSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI 80 (161)
T ss_dssp EEEEC-CSTTHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred EEEEe-hhHHHHHHHHHHHHCC-CeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcch
Confidence 55565 5899999999999999 69999999988777665432110 012334444567778888776 234
Q ss_pred HHcCCCCcEEEEccc
Q 018819 159 RRSGRPLDVLVCNAA 173 (350)
Q Consensus 159 ~~~~g~id~lv~~Ag 173 (350)
.....+=+++|.+.-
T Consensus 81 ~~~~~~g~iiid~sT 95 (161)
T d1vpda2 81 IEGAKPGTVLIDMSS 95 (161)
T ss_dssp HHHCCTTCEEEECSC
T ss_pred hhccCCCCEEEECCC
Confidence 443334456665543
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.17 E-value=0.088 Score=39.83 Aligned_cols=37 Identities=22% Similarity=0.443 Sum_probs=32.0
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
..++||++||+|| |.+|..-++.|.+.|| +|.+++..
T Consensus 9 ~~l~gkrvLViGg-G~va~~ka~~Ll~~GA-~VtVvap~ 45 (150)
T d1kyqa1 9 HQLKDKRILLIGG-GEVGLTRLYKLMPTGC-KLTLVSPD 45 (150)
T ss_dssp ECCTTCEEEEEEE-SHHHHHHHHHHGGGTC-EEEEEEEE
T ss_pred eeeCCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4689999999999 6799999999999997 77777643
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=93.79 E-value=0.047 Score=40.26 Aligned_cols=69 Identities=17% Similarity=0.227 Sum_probs=47.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
|.++|.|. |.+|..+++.|. | +.|+++..+++..+.... ..+.++.+|.++++.++++ ....-+
T Consensus 1 kHivI~G~-g~~g~~l~~~L~--~-~~i~vi~~d~~~~~~~~~------~~~~~i~Gd~~~~~~L~~a------~i~~A~ 64 (129)
T d2fy8a1 1 RHVVICGW-SESTLECLRELR--G-SEVFVLAEDENVRKKVLR------SGANFVHGDPTRVSDLEKA------NVRGAR 64 (129)
T ss_dssp CCEEEESC-CHHHHHHHHTSC--G-GGEEEEESCTTHHHHHHH------TTCEEEESCTTSHHHHHHT------TCTTCS
T ss_pred CEEEEECC-CHHHHHHHHHHc--C-CCCEEEEcchHHHHHHHh------cCccccccccCCHHHHHHh------hhhcCc
Confidence 45788875 789999999994 4 356667777766554432 2467888999998876653 223566
Q ss_pred EEEEc
Q 018819 167 VLVCN 171 (350)
Q Consensus 167 ~lv~~ 171 (350)
.+|.+
T Consensus 65 ~vi~~ 69 (129)
T d2fy8a1 65 AVIVN 69 (129)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 77653
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=93.77 E-value=0.071 Score=42.54 Aligned_cols=72 Identities=19% Similarity=0.167 Sum_probs=53.8
Q ss_pred cccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 82 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 82 ~~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
.++.|+++|=.|++.|+ ++..++..|+.+|+.++.+....+.+.+.+ .++.++.+|+.+.
T Consensus 45 ~dl~Gk~VLDlGcGtG~---l~i~a~~~ga~~V~~vDid~~a~~~ar~N~----~~~~~~~~D~~~l------------- 104 (197)
T d1ne2a_ 45 GNIGGRSVIDAGTGNGI---LACGSYLLGAESVTAFDIDPDAIETAKRNC----GGVNFMVADVSEI------------- 104 (197)
T ss_dssp TSSBTSEEEEETCTTCH---HHHHHHHTTBSEEEEEESCHHHHHHHHHHC----TTSEEEECCGGGC-------------
T ss_pred CCCCCCEEEEeCCCCcH---HHHHHHHcCCCcccccccCHHHHHHHHHcc----ccccEEEEehhhc-------------
Confidence 36789999999998873 344577788878999999877766555544 3578899998542
Q ss_pred CCCCcEEEEccc
Q 018819 162 GRPLDVLVCNAA 173 (350)
Q Consensus 162 ~g~id~lv~~Ag 173 (350)
.+++|+||.|.-
T Consensus 105 ~~~fD~Vi~NPP 116 (197)
T d1ne2a_ 105 SGKYDTWIMNPP 116 (197)
T ss_dssp CCCEEEEEECCC
T ss_pred CCcceEEEeCcc
Confidence 258999998854
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=93.53 E-value=0.23 Score=35.45 Aligned_cols=69 Identities=17% Similarity=0.155 Sum_probs=51.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
..++.|.|| |-||+-++....+.| .++++++.+...-.. ...-.++..|..|.+.+.++.... .+
T Consensus 11 ~~kigIlGg-GQL~rMla~aA~~lG-~~v~v~d~~~~~PA~--------~va~~~i~~~~~d~~~l~~~~~~~-----~~ 75 (111)
T d1kjqa2 11 ATRVMLLGS-GELGKEVAIECQRLG-VEVIAVDRYADAPAM--------HVAHRSHVINMLDGDALRRVVELE-----KP 75 (111)
T ss_dssp CCEEEEESC-SHHHHHHHHHHHTTT-CEEEEEESSTTCGGG--------GGSSEEEECCTTCHHHHHHHHHHH-----CC
T ss_pred CCEEEEEeC-CHHHHHHHHHHHHCC-CEEEEEcCCCCCchh--------hcCCeEEECCCCCHHHHHHHHHhh-----CC
Confidence 347999995 799999999999999 588888876432110 011257789999999999988765 68
Q ss_pred cEEE
Q 018819 166 DVLV 169 (350)
Q Consensus 166 d~lv 169 (350)
|++.
T Consensus 76 DviT 79 (111)
T d1kjqa2 76 HYIV 79 (111)
T ss_dssp SEEE
T ss_pred ceEE
Confidence 8874
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=93.44 E-value=0.59 Score=35.50 Aligned_cols=84 Identities=14% Similarity=0.109 Sum_probs=54.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC-cEEEEEecChhHHHHHHHHhc------------cCCCceEEEEccCCCHHHHHH
Q 018819 87 GSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAG------------MAKENYTIMHLDLASLDSVRQ 153 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga-~~Vi~~~r~~~~~~~~~~~l~------------~~~~~v~~~~~Dvs~~~~v~~ 153 (350)
|.++|.|. |-||.++|+.|.+.|. .+|+.++++.+..+.+.+.-. ....++.++. +.++++.+
T Consensus 2 k~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila---~p~~~~~~ 77 (171)
T d2g5ca2 2 QNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS---SPVRTFRE 77 (171)
T ss_dssp CEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEEC---SCHHHHHH
T ss_pred CEEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhcccccccccc---CCchhhhh
Confidence 36888875 8999999999999983 378889999877766554311 0111222222 33567888
Q ss_pred HHHHHHHcCCCCcEEEEcccc
Q 018819 154 FVDTFRRSGRPLDVLVCNAAV 174 (350)
Q Consensus 154 ~~~~~~~~~g~id~lv~~Ag~ 174 (350)
+++++.....+=.+++..+++
T Consensus 78 vl~~l~~~~~~~~ii~d~~s~ 98 (171)
T d2g5ca2 78 IAKKLSYILSEDATVTDQGSV 98 (171)
T ss_dssp HHHHHHHHSCTTCEEEECCSC
T ss_pred hhhhhhccccccccccccccc
Confidence 888887765544555555544
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=93.41 E-value=0.29 Score=37.56 Aligned_cols=76 Identities=17% Similarity=0.166 Sum_probs=56.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
.+++|.|+ |--|+.-++.....|| .|.+++.+.+.++++...... .+.. -.++.+.+++.+. .-|
T Consensus 33 a~V~ViGa-GvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~~---~~~~---~~~~~~~l~~~~~-------~aD 97 (168)
T d1pjca1 33 GKVVILGG-GVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGS---RVEL---LYSNSAEIETAVA-------EAD 97 (168)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG---GSEE---EECCHHHHHHHHH-------TCS
T ss_pred cEEEEECC-ChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhcc---ccee---ehhhhhhHHHhhc-------cCc
Confidence 47899987 6889999999999997 999999998888877666542 2332 3456666665554 579
Q ss_pred EEEEccccCCC
Q 018819 167 VLVCNAAVYLP 177 (350)
Q Consensus 167 ~lv~~Ag~~~~ 177 (350)
++|.++-+.+.
T Consensus 98 ivI~aalipG~ 108 (168)
T d1pjca1 98 LLIGAVLVPGR 108 (168)
T ss_dssp EEEECCCCTTS
T ss_pred EEEEeeecCCc
Confidence 99999987543
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=93.37 E-value=0.046 Score=44.79 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=39.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHh
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA 131 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l 131 (350)
+++|++++|-| .|-+|..+|+.|.+.|+ +|+..+.+...........
T Consensus 36 ~l~g~~v~IqG-~GnVG~~~a~~L~~~Ga-kvv~~d~~~~~~~~~~~~~ 82 (230)
T d1leha1 36 SLEGLAVSVQG-LGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEE 82 (230)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHH
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCC-EEEeecccHHHHHHHHHhc
Confidence 57899999988 58999999999999997 8888888877776665544
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.00 E-value=0.34 Score=36.59 Aligned_cols=78 Identities=9% Similarity=-0.010 Sum_probs=44.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC------cEEEEEecCh--hHHHHHHHHhccC-CCceEEEEccCCCHHHHHHHHHHH
Q 018819 88 SVIITGASSGLGLATAKALAETGK------WHIIMACRDF--LKAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDTF 158 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga------~~Vi~~~r~~--~~~~~~~~~l~~~-~~~v~~~~~Dvs~~~~v~~~~~~~ 158 (350)
.+.|+||+|.+|.+++..|+..+- ..+++.+.+. ..++....++... ......+. .++.. .+.
T Consensus 5 KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~--~~~---- 76 (154)
T d5mdha1 5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVI--ATDKE--EIA---- 76 (154)
T ss_dssp EEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEE--EESCH--HHH----
T ss_pred EEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccc--cCccc--ccc----
Confidence 689999999999999999987542 1355555443 3333333333211 11111111 11111 111
Q ss_pred HHcCCCCcEEEEccccCC
Q 018819 159 RRSGRPLDVLVCNAAVYL 176 (350)
Q Consensus 159 ~~~~g~id~lv~~Ag~~~ 176 (350)
....|++|..+|...
T Consensus 77 ---~~~~dvVVitag~~~ 91 (154)
T d5mdha1 77 ---FKDLDVAILVGSMPR 91 (154)
T ss_dssp ---TTTCSEEEECCSCCC
T ss_pred ---cCCceEEEEecccCC
Confidence 236899999999854
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=92.93 E-value=0.32 Score=37.55 Aligned_cols=82 Identities=17% Similarity=0.170 Sum_probs=52.1
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCC------------------ceEEEEccCCCHHH
Q 018819 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE------------------NYTIMHLDLASLDS 150 (350)
Q Consensus 89 ~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~------------------~v~~~~~Dvs~~~~ 150 (350)
+-|. |.|-+|..+|++|++.| +.|.+++|+.++.+++.++-..... ....+..-+.+...
T Consensus 4 IGvI-GlG~MG~~ma~~L~~~G-~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178)
T d1pgja2 4 VGVV-GLGVMGANLALNIAEKG-FKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA 81 (178)
T ss_dssp EEEE-CCSHHHHHHHHHHHHTT-CCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred EEEE-eehHHHHHHHHHHHHCC-CeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence 4444 46899999999999999 6999999999888877665421110 11222333444455
Q ss_pred HHHHHHHHHHcCCCCcEEEEcc
Q 018819 151 VRQFVDTFRRSGRPLDVLVCNA 172 (350)
Q Consensus 151 v~~~~~~~~~~~g~id~lv~~A 172 (350)
+...+..+.....+=+++|+..
T Consensus 82 ~~~~~~~~~~~~~~~~iii~~s 103 (178)
T d1pgja2 82 TDSTIEQLKKVFEKGDILVDTG 103 (178)
T ss_dssp HHHHHHHHHHHCCTTCEEEECC
T ss_pred hhhhhhhhhhhccccceecccC
Confidence 5566666655554445555543
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=92.93 E-value=0.71 Score=39.39 Aligned_cols=117 Identities=13% Similarity=0.156 Sum_probs=70.4
Q ss_pred CCCEEEEEcCC-CchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCC--CceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 85 RKGSVIITGAS-SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK--ENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 85 ~~~~~lItGgs-~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~--~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+|+++|=.++. |+++.. ++..||.+|+.++.+...++.+.+.+...| .++.++..|+. +....+...
T Consensus 145 ~g~~VLDl~~g~G~~si~----~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~------~~~~~~~~~ 214 (324)
T d2as0a2 145 PGDRVLDVFTYTGGFAIH----AAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAF------EEMEKLQKK 214 (324)
T ss_dssp TTCEEEETTCTTTHHHHH----HHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHH------HHHHHHHHT
T ss_pred CCCeeecccCcccchhhh----hhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhh------hhhHHHHhc
Confidence 47888877765 444443 456788899999999888777766654443 36788887763 233444445
Q ss_pred CCCCcEEEEccccCCCCCCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEec
Q 018819 162 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 226 (350)
Q Consensus 162 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~g~iV~vSS 226 (350)
..++|.||.+.-.... +..+.... ......+.+.+++.++. +|.+|+.|.
T Consensus 215 ~~~fD~Vi~DpP~~~~-------~~~~~~~~----~~~y~~l~~~a~~ll~p----GG~lv~~s~ 264 (324)
T d2as0a2 215 GEKFDIVVLDPPAFVQ-------HEKDLKAG----LRAYFNVNFAGLNLVKD----GGILVTCSC 264 (324)
T ss_dssp TCCEEEEEECCCCSCS-------SGGGHHHH----HHHHHHHHHHHHTTEEE----EEEEEEEEC
T ss_pred cCCCCchhcCCccccC-------CHHHHHHH----HHHHHHHHHHHHHHcCC----CcEEEEEeC
Confidence 5689999988765322 11222221 22334455556655554 456666553
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=92.89 E-value=0.057 Score=42.68 Aligned_cols=42 Identities=24% Similarity=0.161 Sum_probs=34.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHh
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA 131 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l 131 (350)
++.|.|+ |-+|..+|..++..| +.|++.+++.+.+++..+.+
T Consensus 6 ~vaViGa-G~mG~~iA~~~a~~G-~~V~l~D~~~~~l~~~~~~i 47 (186)
T d1wdka3 6 QAAVLGA-GIMGGGIAYQSASKG-TPILMKDINEHGIEQGLAEA 47 (186)
T ss_dssp SEEEECC-HHHHHHHHHHHHHTT-CCEEEECSSHHHHHHHHHHH
T ss_pred EEEEECc-CHHHHHHHHHHHhCC-CeEEEEECCHHHHhhhhhhh
Confidence 5788887 789999999999999 69999999987766654443
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=92.87 E-value=0.21 Score=36.16 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=29.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~ 121 (350)
++.++|.|| |-+|.++|..|+++| .+|.++.+..
T Consensus 30 ~~~vvIIGg-G~iG~E~A~~l~~~g-~~Vtli~~~~ 63 (121)
T d1d7ya2 30 QSRLLIVGG-GVIGLELAATARTAG-VHVSLVETQP 63 (121)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESSS
T ss_pred CCeEEEECc-chhHHHHHHHhhccc-ceEEEEeecc
Confidence 457888886 899999999999999 5898888764
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.79 E-value=0.52 Score=35.75 Aligned_cols=84 Identities=11% Similarity=0.073 Sum_probs=53.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhcc-------CCCceEEEEccCCCHHHHHHHHHH---
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-------AKENYTIMHLDLASLDSVRQFVDT--- 157 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~-------~~~~v~~~~~Dvs~~~~v~~~~~~--- 157 (350)
++-|.| .|-+|.++|++|+++| +.|.+.+|+.+..+.+...-.. .......+..-+.+.+.++.++..
T Consensus 3 kIg~IG-lG~MG~~iA~~L~~~g-~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~ 80 (162)
T d3cuma2 3 QIAFIG-LGHMGAPMATNLLKAG-YLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDG 80 (162)
T ss_dssp EEEEEC-CSTTHHHHHHHHHHTT-CEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTC
T ss_pred EEEEEE-EHHHHHHHHHHHHHCC-CeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhcccc
Confidence 466665 6899999999999999 6999999998776665433211 011233444556677777776653
Q ss_pred HHHcCCCCcEEEEccc
Q 018819 158 FRRSGRPLDVLVCNAA 173 (350)
Q Consensus 158 ~~~~~g~id~lv~~Ag 173 (350)
+.....+=+++|.+.-
T Consensus 81 ~~~~l~~g~iiid~st 96 (162)
T d3cuma2 81 LLAHIAPGTLVLECST 96 (162)
T ss_dssp HHHHSCTTCEEEECSC
T ss_pred ccccCCCCCEEEECCC
Confidence 3333333355665543
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.66 E-value=0.029 Score=50.58 Aligned_cols=37 Identities=35% Similarity=0.408 Sum_probs=32.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
.+++..|||.|+ ||||.++++.|+..|..++.+++.+
T Consensus 34 ~l~~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D 70 (426)
T d1yovb1 34 LLDTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMD 70 (426)
T ss_dssp HHHHCCEEEECS-STTHHHHHHHHHTTTCCCEEEECCC
T ss_pred HHhcCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECC
Confidence 356778999998 7899999999999998889988774
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.65 E-value=0.18 Score=36.14 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=28.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~ 121 (350)
+.++|.|| |-+|.++|..|++.|. +|.++.|..
T Consensus 23 ~~v~IiGg-G~ig~E~A~~l~~~G~-~Vtlve~~~ 55 (117)
T d1ebda2 23 KSLVVIGG-GYIGIELGTAYANFGT-KVTILEGAG 55 (117)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred CeEEEECC-Cccceeeeeeeccccc-EEEEEEecc
Confidence 47888887 7999999999999995 888887764
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.32 E-value=0.16 Score=40.28 Aligned_cols=77 Identities=14% Similarity=0.062 Sum_probs=60.1
Q ss_pred EEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCcEEEE
Q 018819 91 ITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVC 170 (350)
Q Consensus 91 ItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id~lv~ 170 (350)
+|-|+||...++.+.+ ..| +|+.++++++.++.+.+.++..+.++.++..+.++...+ +... ...++|+++.
T Consensus 30 ~t~G~Gghs~~il~~~-~~~--~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~---~~~~--~~~~vdgIl~ 101 (192)
T d1m6ya2 30 CTVGEGGHSRAILEHC-PGC--RIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFL---LKTL--GIEKVDGILM 101 (192)
T ss_dssp TTCTTSHHHHHHHHHC-TTC--EEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHH---HHHT--TCSCEEEEEE
T ss_pred ecCCCcHHHHHHHhcC-CCC--eEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHH---HHHc--CCCCcceeee
Confidence 5778888888888876 334 899999999999888888887788899999998875443 2221 1358999999
Q ss_pred ccccC
Q 018819 171 NAAVY 175 (350)
Q Consensus 171 ~Ag~~ 175 (350)
.-|+.
T Consensus 102 DlGvS 106 (192)
T d1m6ya2 102 DLGVS 106 (192)
T ss_dssp ECSCC
T ss_pred ccchh
Confidence 98874
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=92.11 E-value=0.26 Score=35.72 Aligned_cols=34 Identities=24% Similarity=0.415 Sum_probs=28.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
+.|.++|.|| |.+|.++|..|++.|. +|.++.+.
T Consensus 29 ~~k~vvViGg-G~iG~E~A~~l~~~g~-~Vtlie~~ 62 (123)
T d1nhpa2 29 EVNNVVVIGS-GYIGIEAAEAFAKAGK-KVTVIDIL 62 (123)
T ss_dssp TCCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred CCCEEEEECC-hHHHHHHHHHhhccce-EEEEEEec
Confidence 3457888876 7999999999999994 88888775
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.07 E-value=0.31 Score=38.12 Aligned_cols=38 Identities=16% Similarity=0.150 Sum_probs=32.5
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChh
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL 122 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~ 122 (350)
.+.++++.|.|. |.||+.+++.+..-|+ +|+..++...
T Consensus 41 ~l~~k~vgiiG~-G~IG~~va~~~~~fg~-~v~~~d~~~~ 78 (184)
T d1ygya1 41 EIFGKTVGVVGL-GRIGQLVAQRIAAFGA-YVVAYDPYVS 78 (184)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHTTTC-EEEEECTTSC
T ss_pred cccceeeeeccc-cchhHHHHHHhhhccc-eEEeecCCCC
Confidence 568899999984 8999999999999995 9999887643
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=92.00 E-value=0.33 Score=38.43 Aligned_cols=37 Identities=16% Similarity=0.150 Sum_probs=32.5
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~ 121 (350)
.+.|+++.|.|- |.||+.+|+.|..-|+ +|+..++..
T Consensus 40 el~gk~vgIiG~-G~IG~~va~~l~~fg~-~V~~~d~~~ 76 (197)
T d1j4aa1 40 EVRDQVVGVVGT-GHIGQVFMQIMEGFGA-KVITYDIFR 76 (197)
T ss_dssp CGGGSEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred cccCCeEEEecc-cccchhHHHhHhhhcc-cccccCccc
Confidence 578999999985 8999999999999995 898888653
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=91.96 E-value=0.14 Score=39.39 Aligned_cols=38 Identities=18% Similarity=0.104 Sum_probs=33.5
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~ 121 (350)
++.||+++|.|-|.=+|+-++..|.++|| .|.++.+..
T Consensus 34 ~l~GK~v~VIGrS~~VG~Pla~lL~~~ga-tVt~~h~~t 71 (166)
T d1b0aa1 34 DTFGLNAVVIGASNIVGRPMSMELLLAGC-TTTVTHRFT 71 (166)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHTTTC-EEEEECSSC
T ss_pred ccccceEEEEeccccccHHHHHHHHHhhc-ccccccccc
Confidence 57899999999999999999999999997 787776543
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=91.71 E-value=0.44 Score=37.73 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=32.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
.+.+|++.|.|. |.||+.+|+.|..-|+ +|+.+++.
T Consensus 42 ~l~~ktvgIiG~-G~IG~~va~~l~~fg~-~v~~~d~~ 77 (199)
T d1dxya1 42 ELGQQTVGVMGT-GHIGQVAIKLFKGFGA-KVIAYDPY 77 (199)
T ss_dssp CGGGSEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred cccceeeeeeec-ccccccccccccccce-eeeccCCc
Confidence 578899999985 8999999999999995 89988874
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.62 E-value=0.13 Score=39.81 Aligned_cols=38 Identities=11% Similarity=0.120 Sum_probs=33.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~ 121 (350)
++.||+++|.|-|.=+|+-++..|+++|| .|.++.+..
T Consensus 36 ~l~Gk~vvVIGrS~iVGrPLa~lL~~~ga-tVt~~~~~t 73 (170)
T d1a4ia1 36 PIAGRHAVVVGRSKIVGAPMHDLLLWNNA-TVTTCHSKT 73 (170)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTC
T ss_pred ccccceEEEEecCCccchHHHHHHHhccC-ceEEEeccc
Confidence 57999999999999999999999999997 888776654
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=91.48 E-value=0.24 Score=40.38 Aligned_cols=75 Identities=12% Similarity=0.068 Sum_probs=57.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+++++|=.|++.|. ++..|+++|. +|+.++.+++.++.+.+.....+.++.++..|+.+.+ ..++
T Consensus 37 ~~~~vLDiGCG~G~---~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~-----------~~~~ 101 (246)
T d1y8ca_ 37 VFDDYLDLACGTGN---LTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLN-----------INRK 101 (246)
T ss_dssp CTTEEEEETCTTST---THHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC-----------CSCC
T ss_pred CCCeEEEEeCcCCH---HHHHHHHhCC-ccEeeccchhhhhhccccccccCccceeeccchhhhc-----------cccc
Confidence 45689999998885 7778899995 9999999988877777766666778999999986532 1247
Q ss_pred CcEEEEcccc
Q 018819 165 LDVLVCNAAV 174 (350)
Q Consensus 165 id~lv~~Ag~ 174 (350)
+|+++..-+.
T Consensus 102 fD~i~~~~~~ 111 (246)
T d1y8ca_ 102 FDLITCCLDS 111 (246)
T ss_dssp EEEEEECTTG
T ss_pred ccccceeeee
Confidence 9988865443
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=91.47 E-value=0.3 Score=38.52 Aligned_cols=36 Identities=19% Similarity=0.191 Sum_probs=32.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
.+.||++.|.|. |.||+.+|+.+...|+ +|+..++.
T Consensus 46 eL~gktvgIiG~-G~IG~~va~~l~~fg~-~v~~~d~~ 81 (193)
T d1mx3a1 46 RIRGETLGIIGL-GRVGQAVALRAKAFGF-NVLFYDPY 81 (193)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHTTTC-EEEEECTT
T ss_pred eeeCceEEEecc-ccccccceeeeecccc-ceeeccCc
Confidence 578999999975 8999999999999995 89988875
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=91.46 E-value=0.2 Score=37.80 Aligned_cols=43 Identities=30% Similarity=0.397 Sum_probs=36.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHh
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA 131 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l 131 (350)
.+.+.|+ |-+|.++++.|.+.|.+.|++.+|+.++.+.+.++.
T Consensus 2 kI~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~ 44 (152)
T d1yqga2 2 NVYFLGG-GNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKEL 44 (152)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHT
T ss_pred EEEEEcC-cHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhc
Confidence 4667776 899999999999888679999999998887776654
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.37 E-value=0.23 Score=36.02 Aligned_cols=32 Identities=16% Similarity=0.275 Sum_probs=27.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
|.++|.|| |-||.++|..|++.|+ .|.++.+.
T Consensus 24 ~~~vIiG~-G~ig~E~A~~l~~lG~-~Vtii~~~ 55 (122)
T d1v59a2 24 KRLTIIGG-GIIGLEMGSVYSRLGS-KVTVVEFQ 55 (122)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred CeEEEECC-CchHHHHHHHHHhhCc-ceeEEEec
Confidence 47888886 7999999999999995 88888775
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.27 E-value=0.27 Score=35.70 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=28.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
|.++|.|| |-||.++|..|++.|. +|.++.|.
T Consensus 23 k~vvIvGg-G~iG~E~A~~l~~~G~-~Vtlv~~~ 54 (125)
T d3grsa2 23 GRSVIVGA-GYIAVEMAGILSALGS-KTSLMIRH 54 (125)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred CEEEEEcC-CccHHHHHHHHhcCCc-EEEEEeec
Confidence 57888987 6899999999999995 89888885
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.25 E-value=0.45 Score=40.36 Aligned_cols=76 Identities=12% Similarity=0.186 Sum_probs=52.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHh--ccCCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA--GMAKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l--~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
.++|++||-.|++.|+ ++..+++.||.+|+.+..++... .+.+.. .....++.++..|+.+...
T Consensus 33 ~~~~~~VLDiGcG~G~---lsl~aa~~Ga~~V~aid~s~~~~-~a~~~~~~~~~~~~i~~~~~~~~~l~~---------- 98 (311)
T d2fyta1 33 IFKDKVVLDVGCGTGI---LSMFAAKAGAKKVLGVDQSEILY-QAMDIIRLNKLEDTITLIKGKIEEVHL---------- 98 (311)
T ss_dssp GTTTCEEEEETCTTSH---HHHHHHHTTCSEEEEEESSTHHH-HHHHHHHHTTCTTTEEEEESCTTTSCC----------
T ss_pred cCCcCEEEEECCCCCH---HHHHHHHcCCCEEEEEeCHHHHH-HHHHHHHHhCCCccceEEEeeHHHhcC----------
Confidence 3578999999999886 56678889988999999876432 222222 2234578999999876421
Q ss_pred cCCCCcEEEEcc
Q 018819 161 SGRPLDVLVCNA 172 (350)
Q Consensus 161 ~~g~id~lv~~A 172 (350)
...++|+||..-
T Consensus 99 ~~~~~D~Ivse~ 110 (311)
T d2fyta1 99 PVEKVDVIISEW 110 (311)
T ss_dssp SCSCEEEEEECC
T ss_pred ccccceEEEEee
Confidence 124789998753
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=90.98 E-value=0.31 Score=35.05 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=27.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
+.++|.|| |-||.++|..|++.|. .|.++.+.
T Consensus 23 ~~i~IiG~-G~ig~E~A~~l~~~G~-~Vtiv~~~ 54 (119)
T d3lada2 23 GKLGVIGA-GVIGLELGSVWARLGA-EVTVLEAM 54 (119)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred CeEEEECC-ChHHHHHHHHHHHcCC-ceEEEEee
Confidence 57888886 7999999999999995 78777765
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=90.54 E-value=0.14 Score=38.87 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=29.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChh
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFL 122 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~ 122 (350)
.++|.|+ |.||..++..|++.| +.|.++.|+..
T Consensus 2 kI~IiGa-G~iG~~~a~~L~~~G-~~V~~~~r~~~ 34 (167)
T d1ks9a2 2 KITVLGC-GALGQLWLTALCKQG-HEVQGWLRVPQ 34 (167)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTT-CEEEEECSSCC
T ss_pred EEEEECc-CHHHHHHHHHHHHCC-CceEEEEcCHH
Confidence 5788888 999999999999999 59999999864
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=90.47 E-value=0.33 Score=34.85 Aligned_cols=32 Identities=13% Similarity=0.200 Sum_probs=27.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
+.++|.|| |-||.++|..|++.|. .|.++.|.
T Consensus 23 ~~v~IiGg-G~iG~E~A~~l~~~g~-~Vtlv~~~ 54 (117)
T d1onfa2 23 KKIGIVGS-GYIAVELINVIKRLGI-DSYIFARG 54 (117)
T ss_dssp SEEEEECC-SHHHHHHHHHHHTTTC-EEEEECSS
T ss_pred CEEEEECC-chHHHHHHHHHHhccc-cceeeehh
Confidence 47888886 7999999999999995 89988875
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=90.45 E-value=0.83 Score=35.43 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=34.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHH
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS 130 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~ 130 (350)
..++|.|+ |-.|+.-++.....|| +|.+++.+....+++...
T Consensus 30 a~VvViGa-GvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l 71 (183)
T d1l7da1 30 ARVLVFGV-GVAGLQAIATAKRLGA-VVMATDVRAATKEQVESL 71 (183)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHT
T ss_pred cEEEEEcC-cHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHh
Confidence 37888987 6889999999999997 999999988777766554
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=90.38 E-value=0.33 Score=35.57 Aligned_cols=72 Identities=17% Similarity=0.270 Sum_probs=50.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEE-EEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHII-MACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi-~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
.+.|.|++|-.|+.+++.+.++|. .++ ..+++... .+. ..+ +..|+|.++.+.+.++.+.+. ++-
T Consensus 2 ki~i~G~~GrMG~~i~~~~~~~~~-~l~~~id~~~~~------~~~--~~D---VvIDFS~p~~~~~~l~~~~~~--~~p 67 (128)
T d1vm6a3 2 KYGIVGYSGRMGQEIQKVFSEKGH-ELVLKVDVNGVE------ELD--SPD---VVIDFSSPEALPKTVDLCKKY--RAG 67 (128)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEEETTEEE------ECS--CCS---EEEECSCGGGHHHHHHHHHHH--TCE
T ss_pred EEEEECCCCHHHHHHHHHHhcCCC-eEEEEECCCcHH------Hhc--cCC---EEEEecCHHHHHHHHHHHHhc--CCC
Confidence 489999999999999999999995 544 34443211 111 122 356999999999999988776 455
Q ss_pred EEEEccc
Q 018819 167 VLVCNAA 173 (350)
Q Consensus 167 ~lv~~Ag 173 (350)
+|+-..|
T Consensus 68 ~ViGTTG 74 (128)
T d1vm6a3 68 LVLGTTA 74 (128)
T ss_dssp EEECCCS
T ss_pred EEEEcCC
Confidence 6665444
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=90.24 E-value=0.43 Score=36.83 Aligned_cols=61 Identities=18% Similarity=0.164 Sum_probs=47.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccC-------------CCceEEEEccCCCHH
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-------------KENYTIMHLDLASLD 149 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~-------------~~~v~~~~~Dvs~~~ 149 (350)
++++||..|++.| ..+..|+++| .+|+.++.++..++.+.+..+.. +..+.++.+|..+..
T Consensus 20 ~~~rvLd~GCG~G---~~a~~la~~G-~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 93 (201)
T d1pjza_ 20 PGARVLVPLCGKS---QDMSWLSGQG-YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT 93 (201)
T ss_dssp TTCEEEETTTCCS---HHHHHHHHHC-CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST
T ss_pred CCCEEEEecCcCC---HHHHHHHHcC-CceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccc
Confidence 5679999999877 3777999999 59999999988888877766432 334577888887754
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=90.19 E-value=0.18 Score=39.30 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=27.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~ 121 (350)
.+.|.|+ |..|.++|..|++.| +.|.+.+|..
T Consensus 2 kI~ViGa-G~~GtalA~~la~~g-~~V~l~~r~~ 33 (180)
T d1txga2 2 IVSILGA-GAMGSALSVPLVDNG-NEVRIWGTEF 33 (180)
T ss_dssp EEEEESC-CHHHHHHHHHHHHHC-CEEEEECCGG
T ss_pred EEEEECC-CHHHHHHHHHHHHCC-CEEEEEEecc
Confidence 4677876 899999999999999 6999999854
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=90.14 E-value=0.34 Score=34.62 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=27.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~ 121 (350)
+.++|.|| |-+|.++|..|.+.|. +|.++.|..
T Consensus 22 ~~vvIiGg-G~ig~E~A~~l~~~G~-~Vtlve~~~ 54 (116)
T d1gesa2 22 ERVAVVGA-GYIGVELGGVINGLGA-KTHLFEMFD 54 (116)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred CEEEEECC-ChhhHHHHHHhhcccc-EEEEEeecc
Confidence 36788876 7999999999999995 888888763
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=90.13 E-value=0.47 Score=33.90 Aligned_cols=34 Identities=21% Similarity=0.360 Sum_probs=28.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
+++.++|.|| |-||.++|..|++.|. .|.++.|.
T Consensus 21 ~~~~vvVvGg-G~ig~E~A~~l~~~g~-~vt~i~~~ 54 (121)
T d1mo9a2 21 PGSTVVVVGG-SKTAVEYGCFFNATGR-RTVMLVRT 54 (121)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcch-hheEeecc
Confidence 3568888886 7999999999999995 88888775
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=90.10 E-value=0.64 Score=34.91 Aligned_cols=82 Identities=20% Similarity=0.141 Sum_probs=53.1
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccC------CCceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA------KENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 89 ~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~------~~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
+-+.| .|-+|..+|++|.+.| + +++..|+.++..+..+..... -.+...+...+.+.+.+....+.+....
T Consensus 3 Ig~IG-lG~MG~~ma~~L~~~g-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~l~~~~ 79 (156)
T d2cvza2 3 VAFIG-LGAMGYPMAGHLARRF-P-TLVWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVAEALYPYL 79 (156)
T ss_dssp EEEEC-CSTTHHHHHHHHHTTS-C-EEEECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHHHHHTTTC
T ss_pred EEEEe-HHHHHHHHHHHHHhCC-C-EEEEeCCHHHHHHHHHHcCCcccccccccceeEEEecccchhhhhhhhccccccc
Confidence 44555 4899999999999988 3 456788877766665554211 0123334445667778888888777665
Q ss_pred CCCcEEEEccc
Q 018819 163 RPLDVLVCNAA 173 (350)
Q Consensus 163 g~id~lv~~Ag 173 (350)
.+-.++|.+.-
T Consensus 80 ~~~~~iid~sT 90 (156)
T d2cvza2 80 REGTYWVDATS 90 (156)
T ss_dssp CTTEEEEECSC
T ss_pred ccccccccccc
Confidence 55566665543
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=89.95 E-value=0.32 Score=35.20 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=28.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~ 121 (350)
+.++|.|| |-||.++|..|.+.|. +|.++.|+.
T Consensus 26 ~~~viiG~-G~iglE~A~~~~~~G~-~Vtvi~~~~ 58 (123)
T d1dxla2 26 KKLVVIGA-GYIGLEMGSVWGRIGS-EVTVVEFAS 58 (123)
T ss_dssp SEEEESCC-SHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred CeEEEEcc-chHHHHHHHHHHhcCC-eEEEEEEcc
Confidence 47888886 7999999999999995 899988863
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=89.85 E-value=0.48 Score=37.07 Aligned_cols=36 Identities=28% Similarity=0.266 Sum_probs=31.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
.+.++++.|.|. |.||+++++.|...|. +|+..++.
T Consensus 41 ~l~~~~vgiiG~-G~IG~~va~~l~~fg~-~v~~~d~~ 76 (188)
T d2naca1 41 DLEAMHVGTVAA-GRIGLAVLRRLAPFDV-HLHYTDRH 76 (188)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHGGGTC-EEEEECSS
T ss_pred eccccceeeccc-cccchhhhhhhhccCc-eEEEEeec
Confidence 578999999985 8999999999999994 89999875
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=89.76 E-value=0.2 Score=39.44 Aligned_cols=41 Identities=12% Similarity=0.153 Sum_probs=34.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHH
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS 130 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~ 130 (350)
.+.|.|+ |..|.++|..|++.| +.|.+.+|+++..+.+.+.
T Consensus 9 KI~ViGa-G~wGtAlA~~La~~g-~~V~l~~r~~~~~~~i~~~ 49 (189)
T d1n1ea2 9 KAVVFGS-GAFGTALAMVLSKKC-REVCVWHMNEEEVRLVNEK 49 (189)
T ss_dssp EEEEECC-SHHHHHHHHHHHTTE-EEEEEECSCHHHHHHHHHH
T ss_pred eEEEECC-CHHHHHHHHHHHHcC-CeEEEEEecHHHHHHHhhc
Confidence 5888886 689999999999999 6999999998777665543
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=89.72 E-value=0.36 Score=34.83 Aligned_cols=33 Identities=39% Similarity=0.556 Sum_probs=28.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~ 121 (350)
+.++|.|| |-+|.++|..|++.|. +|.++.|.+
T Consensus 33 ~~vvIiGg-G~iG~E~A~~l~~~g~-~Vtlv~~~~ 65 (122)
T d1xhca2 33 GEAIIIGG-GFIGLELAGNLAEAGY-HVKLIHRGA 65 (122)
T ss_dssp SEEEEEEC-SHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred CcEEEECC-cHHHHHHHHHhhcccc-eEEEEeccc
Confidence 56888886 8999999999999995 888888753
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=89.71 E-value=1.2 Score=34.60 Aligned_cols=36 Identities=14% Similarity=0.086 Sum_probs=31.5
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
.+.++++.|.| .|.||+.+|+.+...|. +|+..++.
T Consensus 41 ~l~~~~vgiiG-~G~IG~~va~~l~~fg~-~v~~~d~~ 76 (188)
T d1sc6a1 41 EARGKKLGIIG-YGHIGTQLGILAESLGM-YVYFYDIE 76 (188)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred cccceEEEEee-cccchhhhhhhcccccc-eEeecccc
Confidence 57889999996 58999999999999995 89998875
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=89.42 E-value=0.6 Score=36.63 Aligned_cols=36 Identities=22% Similarity=0.121 Sum_probs=31.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
.+.|+++.|.|. |.||+.+|+.+...|. +|+..++.
T Consensus 44 ~l~g~tvgIiG~-G~IG~~va~~l~~fg~-~v~~~d~~ 79 (191)
T d1gdha1 44 KLDNKTLGIYGF-GSIGQALAKRAQGFDM-DIDYFDTH 79 (191)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHTTTC-EEEEECSS
T ss_pred eecccceEEeec-ccchHHHHHHHHhhcc-cccccccc
Confidence 578999999985 8999999999999995 88888875
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.36 E-value=0.35 Score=34.92 Aligned_cols=31 Identities=29% Similarity=0.394 Sum_probs=26.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
.++|.|| |-||.++|..|.+.|. .|.++.|+
T Consensus 22 ~vvIIGg-G~iG~E~A~~l~~lG~-~Vtii~~~ 52 (122)
T d1h6va2 22 KTLVVGA-SYVALECAGFLAGIGL-DVTVMVRS 52 (122)
T ss_dssp SEEEECC-SHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred eEEEECC-CccHHHHHHHHhhcCC-eEEEEEec
Confidence 5777876 7999999999999996 77777775
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=89.19 E-value=0.39 Score=34.19 Aligned_cols=32 Identities=16% Similarity=0.304 Sum_probs=27.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
+.++|.|| |-+|.++|..|++.|. .|.++.+.
T Consensus 22 ~~vvIiGg-G~~G~E~A~~l~~~g~-~Vtlve~~ 53 (115)
T d1lvla2 22 QHLVVVGG-GYIGLELGIAYRKLGA-QVSVVEAR 53 (115)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred CeEEEECC-CHHHHHHHHHHhhccc-ceEEEeee
Confidence 46777776 8999999999999995 88888775
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.17 E-value=0.27 Score=37.96 Aligned_cols=37 Identities=22% Similarity=0.195 Sum_probs=33.5
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
+++||.++|.|-|.=+|+-+|..|+++|| .|..+..+
T Consensus 26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~ga-TVt~~~~~ 62 (171)
T d1edza1 26 RLYGKKCIVINRSEIVGRPLAALLANDGA-TVYSVDVN 62 (171)
T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTSC-EEEEECSS
T ss_pred CCCCCEEEEECCccccHHHHHHHHHHCCC-EEEEeccc
Confidence 67999999999999999999999999997 88877654
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.86 E-value=0.72 Score=33.97 Aligned_cols=76 Identities=13% Similarity=0.114 Sum_probs=49.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCcEEEE-EecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCCc
Q 018819 88 SVIITGASSGLGLATAKALAETGKWHIIM-ACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 166 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga~~Vi~-~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~id 166 (350)
.+.|.|++|-+|+.+++...+..-..++. +++... .... ...+.+ +..|+|.++.+.+.++.+.+. ++-
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~-~~~~----~~~~~D---vvIDFS~p~~~~~~~~~~~~~--~~~ 70 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDP-LSLL----TDGNTE---VVIDFTHPDVVMGNLEFLIDN--GIH 70 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCC-THHH----HTTTCS---EEEECCCTTTHHHHHHHHHHT--TCE
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc-hhhh----ccccCC---EEEEcccHHHHHHHHHHHHhc--CCC
Confidence 37899999999999999887755234433 344321 1111 111222 357999999999999988876 455
Q ss_pred EEEEccc
Q 018819 167 VLVCNAA 173 (350)
Q Consensus 167 ~lv~~Ag 173 (350)
.||-..|
T Consensus 71 ~ViGTTG 77 (135)
T d1yl7a1 71 AVVGTTG 77 (135)
T ss_dssp EEECCCC
T ss_pred EEEeccc
Confidence 6664433
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=88.79 E-value=0.53 Score=35.30 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=27.5
Q ss_pred CCEEEEE-cCCCchHHHHHHHHHHcCCcEEEEEecCh
Q 018819 86 KGSVIIT-GASSGLGLATAKALAETGKWHIIMACRDF 121 (350)
Q Consensus 86 ~~~~lIt-Ggs~gIG~~ia~~la~~Ga~~Vi~~~r~~ 121 (350)
++.++|. .|++-||.++|..|+++|+ +|.++.+..
T Consensus 39 ~~~vvi~d~ggg~ig~e~A~~la~~G~-~Vtlv~~~~ 74 (156)
T d1djqa2 39 GKRVVILNADTYFMAPSLAEKLATAGH-EVTIVSGVH 74 (156)
T ss_dssp CSEEEEEECCCSSHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred CCceEEEecCCChHHHHHHHHHHHcCC-eEEEEecCC
Confidence 3455554 4568899999999999995 899988764
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=88.76 E-value=0.3 Score=39.40 Aligned_cols=34 Identities=29% Similarity=0.510 Sum_probs=29.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
..|.|+|.|| |-.|..+|..|+++|. .|.++.|+
T Consensus 5 ~~~kVvVIGa-GiaGl~~A~~L~~~G~-~V~vier~ 38 (268)
T d1c0pa1 5 SQKRVVVLGS-GVIGLSSALILARKGY-SVHILARD 38 (268)
T ss_dssp CSCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred CCCcEEEECc-cHHHHHHHHHHHHCCC-CEEEEeCC
Confidence 4457899987 7899999999999995 89999885
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=88.65 E-value=2.5 Score=31.27 Aligned_cols=76 Identities=16% Similarity=0.235 Sum_probs=51.2
Q ss_pred cCCCEEEEEcCCCc-hHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCC--CceEEEEccCCCHHHHHHHHHHHHH
Q 018819 84 LRKGSVIITGASSG-LGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK--ENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 84 l~~~~~lItGgs~g-IG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~--~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
++|+.+|=.|++.| +|. +.+.+||.+|+.+..+....+.+.+.+...+ .++.+++.|+.+ +++ .
T Consensus 13 ~~g~~vlDl~~GtG~~~i----ea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~------~l~---~ 79 (152)
T d2esra1 13 FNGGRVLDLFAGSGGLAI----EAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAER------AID---C 79 (152)
T ss_dssp CCSCEEEEETCTTCHHHH----HHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHH------HHH---H
T ss_pred CCCCeEEEcCCccCHHHH----HHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccc------ccc---c
Confidence 57788886666544 555 4567898899999999877766666554433 458889888532 222 2
Q ss_pred cCCCCcEEEEcc
Q 018819 161 SGRPLDVLVCNA 172 (350)
Q Consensus 161 ~~g~id~lv~~A 172 (350)
...+.|+++.+.
T Consensus 80 ~~~~fDiIf~DP 91 (152)
T d2esra1 80 LTGRFDLVFLDP 91 (152)
T ss_dssp BCSCEEEEEECC
T ss_pred cccccceeEech
Confidence 345789987653
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=88.59 E-value=1.7 Score=36.71 Aligned_cols=81 Identities=15% Similarity=0.223 Sum_probs=54.8
Q ss_pred cCCCEEEEEcCC-CchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCC-ceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 84 LRKGSVIITGAS-SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE-NYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 84 l~~~~~lItGgs-~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~-~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
.+|+++|=.++. ||++.+ ++..| .+|+.++.+...++.+.+.+...|. ++.++.+|+.+ +.+.....
T Consensus 144 ~~g~rVLDl~~gtG~~s~~----~a~g~-~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~------~~~~~~~~ 212 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALH----LALGF-REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFD------LLRRLEKE 212 (318)
T ss_dssp CCEEEEEEETCTTTHHHHH----HHHHE-EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHH------HHHHHHHT
T ss_pred hCCCeeeccCCCCcHHHHH----HHhcC-CcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHH------HhhhhHhh
Confidence 478888876665 444433 44444 6999999998888877776655453 58888888643 33344445
Q ss_pred CCCCcEEEEccccC
Q 018819 162 GRPLDVLVCNAAVY 175 (350)
Q Consensus 162 ~g~id~lv~~Ag~~ 175 (350)
..+.|.||.+.-..
T Consensus 213 ~~~fD~Vi~DpP~~ 226 (318)
T d1wxxa2 213 GERFDLVVLDPPAF 226 (318)
T ss_dssp TCCEEEEEECCCCS
T ss_pred hcCCCEEEEcCCcc
Confidence 56899999987554
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=88.42 E-value=3.3 Score=34.90 Aligned_cols=80 Identities=11% Similarity=0.067 Sum_probs=53.7
Q ss_pred CCCEEEEEcCC-CchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccC---CCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 85 RKGSVIITGAS-SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA---KENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 85 ~~~~~lItGgs-~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~---~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
+|+++|=..+. ||++. +++..||..|+.++.+...++.+.+.++.. ..++.++..|+ ...++...+
T Consensus 144 ~g~~VLdlf~~~G~~sl----~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~------~~~l~~~~~ 213 (317)
T d2b78a2 144 AGKTVLNLFSYTAAFSV----AAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDV------FDYFKYARR 213 (317)
T ss_dssp BTCEEEEETCTTTHHHH----HHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCH------HHHHHHHHH
T ss_pred CCCceeecCCCCcHHHH----HHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccH------HHHHHHHHh
Confidence 57888765554 55543 345678888999999887776665554322 24688898886 334445555
Q ss_pred cCCCCcEEEEcccc
Q 018819 161 SGRPLDVLVCNAAV 174 (350)
Q Consensus 161 ~~g~id~lv~~Ag~ 174 (350)
+..+.|+||...-.
T Consensus 214 ~~~~fD~Ii~DPP~ 227 (317)
T d2b78a2 214 HHLTYDIIIIDPPS 227 (317)
T ss_dssp TTCCEEEEEECCCC
T ss_pred hcCCCCEEEEcChh
Confidence 56689999988643
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.06 E-value=0.21 Score=46.00 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=31.4
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
.|.+..|+|.|+ ||+|.++++.|+..|..++.+++.+
T Consensus 22 ~L~~s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~d 58 (529)
T d1yova1 22 ALESAHVCLINA-TATGTEILKNLVLPGIGSFTIIDGN 58 (529)
T ss_dssp HHHHCEEEECCC-SHHHHHHHHHHHTTTCSEEEEECCS
T ss_pred HHhCCCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 456678999986 7999999999999998889888653
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.03 E-value=0.95 Score=38.33 Aligned_cols=76 Identities=14% Similarity=0.208 Sum_probs=51.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHh--ccCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA--GMAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l--~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
.+|++||-.|++.|+ ++..+++.||.+|+.+..++. ...+.+.. .....++.++..|+.+.+. .
T Consensus 32 ~~~~~VLDiGcG~G~---ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~----------~ 97 (316)
T d1oria_ 32 FKDKVVLDVGSGTGI---LCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVEL----------P 97 (316)
T ss_dssp HTTCEEEEETCTTSH---HHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCC----------S
T ss_pred CCcCEEEEEecCCcH---HHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHccc----------c
Confidence 478899999998885 566788889888999987753 33333322 2234568999998876431 1
Q ss_pred CCCCcEEEEccc
Q 018819 162 GRPLDVLVCNAA 173 (350)
Q Consensus 162 ~g~id~lv~~Ag 173 (350)
..++|+++..-.
T Consensus 98 ~~~~D~ivs~~~ 109 (316)
T d1oria_ 98 VEKVDIIISEWM 109 (316)
T ss_dssp SSCEEEEEECCC
T ss_pred cceeEEEeeeee
Confidence 247898887543
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=87.87 E-value=0.56 Score=34.00 Aligned_cols=32 Identities=19% Similarity=0.326 Sum_probs=27.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 87 GSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 87 ~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
+.++|.|| |-||.++|..|.+.|. .|.++.+.
T Consensus 27 ~~vvIiGg-G~IG~E~A~~~~~~G~-~Vtive~~ 58 (125)
T d1ojta2 27 GKLLIIGG-GIIGLEMGTVYSTLGS-RLDVVEMM 58 (125)
T ss_dssp SEEEEESC-SHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred CeEEEECC-CHHHHHHHHHhhcCCC-EEEEEEee
Confidence 47888886 7999999999999995 88888664
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=87.59 E-value=1.1 Score=36.72 Aligned_cols=73 Identities=22% Similarity=0.182 Sum_probs=53.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
.+|+++|=.|+++|+ ++..+++.|+ +|+.++.++...+.+.+..+..+.++.++..|+.+ .+ ..+
T Consensus 119 ~~g~~VLDiGcGsG~---l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~------~~-----~~~ 183 (254)
T d2nxca1 119 RPGDKVLDLGTGSGV---LAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA------AL-----PFG 183 (254)
T ss_dssp CTTCEEEEETCTTSH---HHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH------HG-----GGC
T ss_pred CccCEEEEcccchhH---HHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCCceeEEeccccc------cc-----ccc
Confidence 478899999999886 3345777895 89999999988888777666666677777777421 11 125
Q ss_pred CCcEEEEc
Q 018819 164 PLDVLVCN 171 (350)
Q Consensus 164 ~id~lv~~ 171 (350)
+.|.++.|
T Consensus 184 ~fD~V~an 191 (254)
T d2nxca1 184 PFDLLVAN 191 (254)
T ss_dssp CEEEEEEE
T ss_pred ccchhhhc
Confidence 79999876
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=87.31 E-value=0.73 Score=37.17 Aligned_cols=74 Identities=14% Similarity=0.072 Sum_probs=55.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 164 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~ 164 (350)
+.+++|=.|++.| .++..|+++|+ +|+.++.++.-++.+.+.+...+.++.++..|+.+.+ .-+.
T Consensus 41 ~~~~iLDiGcGtG---~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~-----------~~~~ 105 (251)
T d1wzna1 41 EVRRVLDLACGTG---IPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIA-----------FKNE 105 (251)
T ss_dssp CCCEEEEETCTTC---HHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCC-----------CCSC
T ss_pred CCCEEEEeCCCCC---ccchhhcccce-EEEEEeeccccccccccccccccccchheehhhhhcc-----------cccc
Confidence 4568999999877 44667889996 8999999987777777776666668999999986632 1136
Q ss_pred CcEEEEccc
Q 018819 165 LDVLVCNAA 173 (350)
Q Consensus 165 id~lv~~Ag 173 (350)
.|.++..-+
T Consensus 106 fD~I~~~~~ 114 (251)
T d1wzna1 106 FDAVTMFFS 114 (251)
T ss_dssp EEEEEECSS
T ss_pred cchHhhhhh
Confidence 898776533
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.02 E-value=1.7 Score=34.52 Aligned_cols=43 Identities=12% Similarity=0.027 Sum_probs=35.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHh
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA 131 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l 131 (350)
.+++||..|++.| ..+..|+++|+ .|+.++-++..++.+.+..
T Consensus 45 ~~~rvLd~GCG~G---~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~ 87 (229)
T d2bzga1 45 SGLRVFFPLCGKA---VEMKWFADRGH-SVVGVEISELGIQEFFTEQ 87 (229)
T ss_dssp CSCEEEETTCTTC---THHHHHHHTTC-EEEEECSCHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCc---HHHHHHHhCCC-cEEEEeCCHHHHHHHHHHh
Confidence 5678999999877 45888999995 9999999988877776654
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=86.94 E-value=0.7 Score=33.76 Aligned_cols=34 Identities=15% Similarity=0.304 Sum_probs=29.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~ 121 (350)
++.++|.|| |-+|.++|..|.+.| ..|.++.+..
T Consensus 35 ~k~v~VIGg-G~iG~E~A~~l~~~g-~~Vtvie~~~ 68 (133)
T d1q1ra2 35 DNRLVVIGG-GYIGLEVAATAIKAN-MHVTLLDTAA 68 (133)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSSS
T ss_pred CCEEEEECC-chHHHHHHHHHHhhC-cceeeeeecc
Confidence 467888886 899999999999999 5898888753
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=86.93 E-value=1.2 Score=34.45 Aligned_cols=79 Identities=14% Similarity=0.277 Sum_probs=53.0
Q ss_pred cCCCEEEE-EcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccC--CCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 84 LRKGSVII-TGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 84 l~~~~~lI-tGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~--~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
++|+.+|= -.|+|++|.+ .+.+||.+|+++..+....+.+.+.+... ..++.++.+|+. +++++..+
T Consensus 40 ~~~~~vLDlfaGsG~~g~e----a~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~------~~l~~~~~ 109 (182)
T d2fhpa1 40 FDGGMALDLYSGSGGLAIE----AVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDAN------RALEQFYE 109 (182)
T ss_dssp CSSCEEEETTCTTCHHHHH----HHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH------HHHHHHHH
T ss_pred cCCCEEEEcccccccccce----eeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccch------hhhhhhcc
Confidence 45667663 4456667775 56689989999999987766665554322 236888888863 34555555
Q ss_pred cCCCCcEEEEcc
Q 018819 161 SGRPLDVLVCNA 172 (350)
Q Consensus 161 ~~g~id~lv~~A 172 (350)
...+.|+++...
T Consensus 110 ~~~~fDlIflDP 121 (182)
T d2fhpa1 110 EKLQFDLVLLDP 121 (182)
T ss_dssp TTCCEEEEEECC
T ss_pred cCCCcceEEech
Confidence 556799988654
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=86.74 E-value=3.1 Score=28.25 Aligned_cols=71 Identities=18% Similarity=0.134 Sum_probs=43.8
Q ss_pred CCCEEEEEcCCCchH-HHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 85 RKGSVIITGASSGLG-LATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG-~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
+.+.+.+.|- +|+| .++|+.|.++| +.|...++......+. +.+.|. .+...+-. +. ..
T Consensus 7 ~~~~ihfiGi-gG~GMs~LA~~L~~~G-~~VsGSD~~~~~~~~~---L~~~Gi--~v~~g~~~--~~-----------i~ 66 (96)
T d1p3da1 7 RVQQIHFIGI-GGAGMSGIAEILLNEG-YQISGSDIADGVVTQR---LAQAGA--KIYIGHAE--EH-----------IE 66 (96)
T ss_dssp TCCEEEEETT-TSTTHHHHHHHHHHHT-CEEEEEESCCSHHHHH---HHHTTC--EEEESCCG--GG-----------GT
T ss_pred hCCEEEEEEE-CHHHHHHHHHHHHhCC-CEEEEEeCCCChhhhH---HHHCCC--eEEECCcc--cc-----------CC
Confidence 4567777775 5777 55799999999 5999888864333222 222343 33333222 11 12
Q ss_pred CCcEEEEccccC
Q 018819 164 PLDVLVCNAAVY 175 (350)
Q Consensus 164 ~id~lv~~Ag~~ 175 (350)
..|.+|...++.
T Consensus 67 ~~d~vV~S~AI~ 78 (96)
T d1p3da1 67 GASVVVVSSAIK 78 (96)
T ss_dssp TCSEEEECTTSC
T ss_pred CCCEEEECCCcC
Confidence 579999998874
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=86.28 E-value=0.32 Score=37.66 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=28.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~ 121 (350)
+|.|+|.|| |-.|...|..|+++|+..|.++.|+.
T Consensus 4 ~~kVaIIGa-GpaGl~aA~~l~~~G~~~V~v~E~~~ 38 (196)
T d1gtea4 4 SAKIALLGA-GPASISCASFLARLGYSDITIFEKQE 38 (196)
T ss_dssp GCCEEEECC-SHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred CCEEEEECC-hHHHHHHHHHHHHCCCCeEEEEEecC
Confidence 457888887 78999999999999964577777753
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=86.07 E-value=0.67 Score=34.71 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=34.1
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHh
Q 018819 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA 131 (350)
Q Consensus 89 ~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l 131 (350)
+.|.| .|-+|.++++.|.+.| +.+++..|+.++.+++.+++
T Consensus 3 Ig~IG-~G~mG~al~~~l~~~~-~~i~v~~r~~~~~~~l~~~~ 43 (152)
T d2ahra2 3 IGIIG-VGKMASAIIKGLKQTP-HELIISGSSLERSKEIAEQL 43 (152)
T ss_dssp EEEEC-CSHHHHHHHHHHTTSS-CEEEEECSSHHHHHHHHHHH
T ss_pred EEEEe-ccHHHHHHHHHHHhCC-CeEEEEcChHHhHHhhcccc
Confidence 45565 5899999999999999 69999999988877776655
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=85.67 E-value=0.62 Score=36.20 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=32.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~ 121 (350)
.+.|+++.|.|. |.||+.+++.+...|+ +|+..+|..
T Consensus 39 ~l~gk~vgIiG~-G~IG~~va~~l~~~g~-~v~~~d~~~ 75 (181)
T d1qp8a1 39 LIQGEKVAVLGL-GEIGTRVGKILAALGA-QVRGFSRTP 75 (181)
T ss_dssp CCTTCEEEEESC-STHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred cccCceEEEecc-ccccccceeeeecccc-ccccccccc
Confidence 478999999996 6799999999999995 999998864
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=85.67 E-value=5.1 Score=30.21 Aligned_cols=76 Identities=13% Similarity=0.139 Sum_probs=40.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC----cEEEEEecChhHHHHHHHHhc----cCCCceEEEEccCCCHHHHHHHHHHHH
Q 018819 88 SVIITGASSGLGLATAKALAETGK----WHIIMACRDFLKAERAAKSAG----MAKENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 88 ~~lItGgs~gIG~~ia~~la~~Ga----~~Vi~~~r~~~~~~~~~~~l~----~~~~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
.+.|.||++.-...+...+..+-. ..|++.+.++++++...+.+. ..+........ +|. .+.+
T Consensus 5 KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~---~eal---- 75 (167)
T d1u8xx1 5 SIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAAT--TDP---EEAF---- 75 (167)
T ss_dssp EEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEE--SCH---HHHH----
T ss_pred eEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEec--CCh---hhcc----
Confidence 467778754322223333433211 489999999887764443332 12233333222 122 2222
Q ss_pred HcCCCCcEEEEccccC
Q 018819 160 RSGRPLDVLVCNAAVY 175 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~ 175 (350)
..-|+||+.+|..
T Consensus 76 ---~~AD~Vvitag~~ 88 (167)
T d1u8xx1 76 ---TDVDFVMAHIRVG 88 (167)
T ss_dssp ---SSCSEEEECCCTT
T ss_pred ---CCCCEEEECCCcC
Confidence 2689999999974
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=85.62 E-value=0.98 Score=36.06 Aligned_cols=78 Identities=18% Similarity=0.101 Sum_probs=56.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCC-CceEEEEccCCCHHHHHHHHHHHHHcCC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDLASLDSVRQFVDTFRRSGR 163 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~-~~v~~~~~Dvs~~~~v~~~~~~~~~~~g 163 (350)
++.++|..|+++|--.++.-.|. | .+|+.+.++++-.+.+.+.+...+ .++.++..|..+- ....+
T Consensus 78 ~g~~VLeIGsGsGY~taila~l~--g-~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g----------~~~~~ 144 (215)
T d1jg1a_ 78 PGMNILEVGTGSGWNAALISEIV--K-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKG----------FPPKA 144 (215)
T ss_dssp TTCCEEEECCTTSHHHHHHHHHH--C-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC----------CGGGC
T ss_pred ccceEEEecCCCChhHHHHHHhh--C-ceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccC----------CcccC
Confidence 56789999998888777776666 4 378889898776666666665444 5789999997641 11235
Q ss_pred CCcEEEEccccC
Q 018819 164 PLDVLVCNAAVY 175 (350)
Q Consensus 164 ~id~lv~~Ag~~ 175 (350)
+.|.++.++++.
T Consensus 145 pfD~Iiv~~a~~ 156 (215)
T d1jg1a_ 145 PYDVIIVTAGAP 156 (215)
T ss_dssp CEEEEEECSBBS
T ss_pred cceeEEeecccc
Confidence 899999888773
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=85.23 E-value=1.5 Score=34.37 Aligned_cols=75 Identities=15% Similarity=0.119 Sum_probs=55.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCCCceEEEEccCCCHHHHHHHHHHHHHcCCCC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 165 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~~g~i 165 (350)
+.+||=.|++.|. ++..|++.|+ +|+.++.+...++.+.+.+...+..+.++..|..+.. ...+..
T Consensus 38 ~~~ILDiGcG~G~---~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~----------~~~~~f 103 (226)
T d1ve3a1 38 RGKVLDLACGVGG---FSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLS----------FEDKTF 103 (226)
T ss_dssp CCEEEEETCTTSH---HHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCC----------SCTTCE
T ss_pred CCEEEEECCCcch---hhhhHhhhhc-ccccccccccchhhhhhhhcccccccccccccccccc----------ccCcCc
Confidence 3478999998886 6678889995 8999999987777776666555667788888877632 112478
Q ss_pred cEEEEcccc
Q 018819 166 DVLVCNAAV 174 (350)
Q Consensus 166 d~lv~~Ag~ 174 (350)
|+|+.+...
T Consensus 104 D~I~~~~~l 112 (226)
T d1ve3a1 104 DYVIFIDSI 112 (226)
T ss_dssp EEEEEESCG
T ss_pred eEEEEecch
Confidence 998876544
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=84.55 E-value=2.8 Score=32.08 Aligned_cols=74 Identities=15% Similarity=0.113 Sum_probs=51.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCC--CceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK--ENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~--~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
++.++|=.|++.| .++..|++.+ .+|+.++.+++.++.+.+.++..+ .++.++++|.. +.....
T Consensus 33 ~g~~VLDiGcGsG---~~s~~lA~~~-~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~----------~~~~~~ 98 (186)
T d1l3ia_ 33 KNDVAVDVGCGTG---GVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAP----------EALCKI 98 (186)
T ss_dssp TTCEEEEESCTTS---HHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHH----------HHHTTS
T ss_pred CCCEEEEEECCeE---cccccccccc-eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchh----------hccccc
Confidence 4668888888776 3344566677 499999999888888777765554 47889988842 112234
Q ss_pred CCCcEEEEcc
Q 018819 163 RPLDVLVCNA 172 (350)
Q Consensus 163 g~id~lv~~A 172 (350)
..+|.++.+.
T Consensus 99 ~~~D~v~~~~ 108 (186)
T d1l3ia_ 99 PDIDIAVVGG 108 (186)
T ss_dssp CCEEEEEESC
T ss_pred CCcCEEEEeC
Confidence 5789888764
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=84.29 E-value=1.1 Score=33.95 Aligned_cols=39 Identities=18% Similarity=0.260 Sum_probs=34.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhH
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK 123 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~ 123 (350)
.+.||+++|.|= |-+|+.+|++|...|+ +|+++..++-.
T Consensus 20 ~laGk~vvV~GY-G~vGrG~A~~~rg~Ga-~V~V~E~DPi~ 58 (163)
T d1v8ba1 20 LISGKIVVICGY-GDVGKGCASSMKGLGA-RVYITEIDPIC 58 (163)
T ss_dssp CCTTSEEEEECC-SHHHHHHHHHHHHHTC-EEEEECSCHHH
T ss_pred eecCCEEEEecc-cccchhHHHHHHhCCC-EEEEEecCchh
Confidence 478999999985 7899999999999997 99999888644
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=84.23 E-value=0.86 Score=35.28 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=31.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~ 121 (350)
.+.|.++|.|| |--|.+.|..|+++| +.|.++.++.
T Consensus 41 ~~~k~V~IIGa-GPAGL~AA~~la~~G-~~Vtl~E~~~ 76 (179)
T d1ps9a3 41 VQKKNLAVVGA-GPAGLAFAINAAARG-HQVTLFDAHS 76 (179)
T ss_dssp SSCCEEEEECC-SHHHHHHHHHHHTTT-CEEEEEESSS
T ss_pred CCCcEEEEECc-cHHHHHHHHHHHhhc-cceEEEeccC
Confidence 35688999997 788999999999999 6999998853
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=84.18 E-value=2.3 Score=35.05 Aligned_cols=77 Identities=17% Similarity=0.199 Sum_probs=50.1
Q ss_pred CCEEEEEcCCCc-hHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccCC--CceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 86 KGSVIITGASSG-LGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK--ENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 86 ~~~~lItGgs~g-IG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~--~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
.++++-.|+++| |+.++++ ... .+|+.++.+...++-+.+..+..+ .++.+...|+.+. .....
T Consensus 111 ~~~vld~g~GsG~i~~~la~---~~~-~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~---------~~~~~ 177 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVAK---FSD-AIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP---------FKEKF 177 (271)
T ss_dssp CCEEEEESCTTSHHHHHHHH---HSS-CEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG---------GGGGT
T ss_pred ccEEEEeeeeeehhhhhhhh---ccc-ceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccc---------ccccc
Confidence 346665666655 5555442 234 489999999887776666554433 3567778888643 22345
Q ss_pred CCCcEEEEccccC
Q 018819 163 RPLDVLVCNAAVY 175 (350)
Q Consensus 163 g~id~lv~~Ag~~ 175 (350)
+++|++|.|.-..
T Consensus 178 ~~fDlIVsNPPYI 190 (271)
T d1nv8a_ 178 ASIEMILSNPPYV 190 (271)
T ss_dssp TTCCEEEECCCCB
T ss_pred CcccEEEEccccc
Confidence 7899999998764
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=84.12 E-value=0.43 Score=39.17 Aligned_cols=31 Identities=19% Similarity=0.167 Sum_probs=26.7
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCcEEEEEecCh
Q 018819 89 VIITGASSGLGLATAKALAETGKWHIIMACRDF 121 (350)
Q Consensus 89 ~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~ 121 (350)
++|.|| |-.|.++|.+|+++| .+|+++.++.
T Consensus 7 vvIIGa-Gi~Gls~A~~La~~G-~~V~vlE~~~ 37 (276)
T d1ryia1 7 AVVIGG-GIIGSAIAYYLAKEN-KNTALFESGT 37 (276)
T ss_dssp EEEECC-SHHHHHHHHHHHHTT-CCEEEECSSS
T ss_pred EEEECc-CHHHHHHHHHHHHCC-CcEEEEeCCC
Confidence 788886 799999999999999 5898988753
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=83.92 E-value=0.53 Score=38.56 Aligned_cols=33 Identities=27% Similarity=0.300 Sum_probs=27.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
+|.|+|.|| |-=|+..|.+|++.| .+|.++.++
T Consensus 1 ~KkV~IIGa-G~aGL~aA~~La~~G-~~V~vlE~~ 33 (373)
T d1seza1 1 AKRVAVIGA-GVSGLAAAYKLKIHG-LNVTVFEAE 33 (373)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTTS-CEEEEECSS
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCC-CCEEEEeCC
Confidence 478999987 677899999999999 588888764
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=83.12 E-value=0.66 Score=37.68 Aligned_cols=34 Identities=18% Similarity=0.368 Sum_probs=27.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHH-cCCcEEEEEe
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAE-TGKWHIIMAC 118 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~-~Ga~~Vi~~~ 118 (350)
++++++++|-| .|-+|..+|+.|.+ .|+ +|+.++
T Consensus 28 ~l~g~~vaIqG-~GnVG~~~a~~L~~e~Ga-~vv~vs 62 (234)
T d1b26a1 28 DPKKATVAVQG-FGNVGQFAALLISQELGS-KVVAVS 62 (234)
T ss_dssp CTTTCEEEEEC-CSHHHHHHHHHHHHHHCC-EEEEEE
T ss_pred CcCCCEEEEEC-CCHHHHHHHHHHHHhcCC-ceEEee
Confidence 46788999886 79999999999975 597 666544
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.12 E-value=2.5 Score=35.75 Aligned_cols=76 Identities=16% Similarity=0.170 Sum_probs=51.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhc--cCCCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 84 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG--MAKENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 84 l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~--~~~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
.+|++||-.|++.|+ ++..+++.||.+|+.+..+. ..+.+.+... ....++.++..|+.+.+ ..
T Consensus 37 ~~~~~VLDlGcGtG~---ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~----------~~ 102 (328)
T d1g6q1_ 37 FKDKIVLDVGCGTGI---LSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVH----------LP 102 (328)
T ss_dssp HTTCEEEEETCTTSH---HHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC----------CS
T ss_pred CCcCEEEEeCCCCCH---HHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhcc----------Cc
Confidence 478899999998874 45677889988999998774 3333333222 23457889999887642 11
Q ss_pred CCCCcEEEEccc
Q 018819 162 GRPLDVLVCNAA 173 (350)
Q Consensus 162 ~g~id~lv~~Ag 173 (350)
....|+++..-.
T Consensus 103 ~~~~D~i~se~~ 114 (328)
T d1g6q1_ 103 FPKVDIIISEWM 114 (328)
T ss_dssp SSCEEEEEECCC
T ss_pred ccceeEEEEEec
Confidence 246888887643
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=83.04 E-value=1.9 Score=35.21 Aligned_cols=74 Identities=19% Similarity=0.196 Sum_probs=55.2
Q ss_pred CCCEEEEEcCCCc-hHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhccC--CCceEEEEccCCCHHHHHHHHHHHHHc
Q 018819 85 RKGSVIITGASSG-LGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFRRS 161 (350)
Q Consensus 85 ~~~~~lItGgs~g-IG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~--~~~v~~~~~Dvs~~~~v~~~~~~~~~~ 161 (350)
+|.++|=.|+++| +...+|+.+...| +|+.+.++++..+.+.+.++.. ..++.+...|+.+.- .
T Consensus 85 pG~rVLEiG~GsG~lt~~la~~v~~~g--~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~-----------~ 151 (250)
T d1yb2a1 85 PGMDILEVGVGSGNMSSYILYALNGKG--TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI-----------S 151 (250)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHTTSS--EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC-----------C
T ss_pred CcCEEEEeeeeCcHHHHHHHHHhCCCc--EEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccc-----------c
Confidence 5778999998766 6777888776666 8999999998888887777543 357899999987621 0
Q ss_pred CCCCcEEEEc
Q 018819 162 GRPLDVLVCN 171 (350)
Q Consensus 162 ~g~id~lv~~ 171 (350)
...+|.++.+
T Consensus 152 ~~~fD~V~ld 161 (250)
T d1yb2a1 152 DQMYDAVIAD 161 (250)
T ss_dssp SCCEEEEEEC
T ss_pred cceeeeeeec
Confidence 1368988865
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=82.91 E-value=0.53 Score=39.26 Aligned_cols=31 Identities=26% Similarity=0.320 Sum_probs=26.1
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 89 VIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 89 ~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
|+|.|| |-+|.++|.+|+++|...|.++.|+
T Consensus 4 ViIIGa-Gi~G~s~A~~La~~G~~~V~liE~~ 34 (305)
T d1pj5a2 4 IVIIGA-GIVGTNLADELVTRGWNNITVLDQG 34 (305)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred EEEECc-CHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 788886 7999999999999995458888775
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=82.81 E-value=0.66 Score=38.17 Aligned_cols=34 Identities=29% Similarity=0.378 Sum_probs=28.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEe
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMAC 118 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~ 118 (350)
.+++++++|-| .|-+|..+|+.|.+.|+ +|+.++
T Consensus 33 ~l~g~~v~IQG-fGnVG~~~a~~L~e~Ga-kvvavs 66 (255)
T d1bgva1 33 TLVGKTVALAG-FGNVAWGAAKKLAELGA-KAVTLS 66 (255)
T ss_dssp CSTTCEEEECC-SSHHHHHHHHHHHHHTC-EEEEEE
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCC-eEEEEe
Confidence 46889999998 68999999999999997 665543
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=82.65 E-value=4.6 Score=29.41 Aligned_cols=87 Identities=14% Similarity=0.143 Sum_probs=55.2
Q ss_pred CCCEEEEEcCC---CchHHHHHHHHHHcCCcEEEEEecChhHHH--HHHHHhccCCCceEEEEccCCCHHHHHHHHHHHH
Q 018819 85 RKGSVIITGAS---SGLGLATAKALAETGKWHIIMACRDFLKAE--RAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 159 (350)
Q Consensus 85 ~~~~~lItGgs---~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~--~~~~~l~~~~~~v~~~~~Dvs~~~~v~~~~~~~~ 159 (350)
+-|++.|.|+| +..|..+.+.|.+.| ++|+.+........ .....+......+..+. =+..++.+..+++++.
T Consensus 18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g-~~v~pVnP~~~~i~G~~~~~sl~dlp~~iD~v~-i~vp~~~~~~~~~e~~ 95 (139)
T d2d59a1 18 RYKKIALVGASPKPERDANIVMKYLLEHG-YDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVD-LFVKPKLTMEYVEQAI 95 (139)
T ss_dssp HCCEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEECTTCSEETTEECBSSGGGCSSCCSEEE-ECSCHHHHHHHHHHHH
T ss_pred cCCeEEEEeecCCCCCchHHHHHHHHHCC-CEEEEECCcccccCCCcccccccccCccceEEE-EEeCHHHHHHHHHHHH
Confidence 46799999999 579999999999999 58988876532111 00111111111222211 1245788888888887
Q ss_pred HcCCCCcEEEEccccC
Q 018819 160 RSGRPLDVLVCNAAVY 175 (350)
Q Consensus 160 ~~~g~id~lv~~Ag~~ 175 (350)
+. ++..++...|..
T Consensus 96 ~~--g~k~v~~~~G~~ 109 (139)
T d2d59a1 96 KK--GAKVVWFQYNTY 109 (139)
T ss_dssp HH--TCSEEEECTTCC
T ss_pred Hh--CCCEEEEecccc
Confidence 76 466777777753
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=82.37 E-value=9.7 Score=31.72 Aligned_cols=79 Identities=14% Similarity=0.122 Sum_probs=51.5
Q ss_pred CCCEEEEEcCC-CchHHHHHHHHHHcCCcEEEEEecChhHHHHHHHHhcc---CCCceEEEEccCCCHHHHHHHHHHHHH
Q 018819 85 RKGSVIITGAS-SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM---AKENYTIMHLDLASLDSVRQFVDTFRR 160 (350)
Q Consensus 85 ~~~~~lItGgs-~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~---~~~~v~~~~~Dvs~~~~v~~~~~~~~~ 160 (350)
+++.+|=..+. |+++.+ ++..|| .|+.++.+...++.+.+.+.. ...++.++..|+. +++++...
T Consensus 132 ~~~rVLdlf~~tG~~sl~----aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~------~~l~~~~~ 200 (309)
T d2igta1 132 RPLKVLNLFGYTGVASLV----AAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAM------KFIQREER 200 (309)
T ss_dssp SCCEEEEETCTTCHHHHH----HHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHH------HHHHHHHH
T ss_pred CCCeEEEecCCCcHHHHH----HHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHH------HhHHHHhh
Confidence 46677755544 444443 456797 899999998777766654432 2335888887763 34455555
Q ss_pred cCCCCcEEEEcccc
Q 018819 161 SGRPLDVLVCNAAV 174 (350)
Q Consensus 161 ~~g~id~lv~~Ag~ 174 (350)
...+.|+||.+.-.
T Consensus 201 ~~~~fD~IilDPP~ 214 (309)
T d2igta1 201 RGSTYDIILTDPPK 214 (309)
T ss_dssp HTCCBSEEEECCCS
T ss_pred cCCCCCEEEECCCc
Confidence 55689999988543
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=82.10 E-value=0.87 Score=34.24 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=28.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCc-EEEEEecCh
Q 018819 85 RKGSVIITGASSGLGLATAKALAETGKW-HIIMACRDF 121 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~ia~~la~~Ga~-~Vi~~~r~~ 121 (350)
.||.++|.|| |-.|..+|..|.+.|.. .|.++.+++
T Consensus 1 ~gkrivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 1 AGRKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CCCcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 3789999997 68899999999998832 677776653
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=82.02 E-value=1 Score=33.78 Aligned_cols=34 Identities=24% Similarity=0.464 Sum_probs=27.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEecC
Q 018819 86 KGSVIITGASSGLGLATAKALAETGKWHIIMACRD 120 (350)
Q Consensus 86 ~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~ 120 (350)
++.++|.|| |-.|...|..+.+.||..|.++.|.
T Consensus 45 ~~kVvVIGG-GdtA~D~A~~a~r~GA~~V~vi~rr 78 (153)
T d1gtea3 45 RGAVIVLGA-GDTAFDCATSALRCGARRVFLVFRK 78 (153)
T ss_dssp CSEEEEECS-SHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred CCEEEEECC-ChhHHHHHHHHHHcCCcceeEEEeC
Confidence 345777765 7899999999999999888888775
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=81.03 E-value=1 Score=33.57 Aligned_cols=35 Identities=14% Similarity=0.128 Sum_probs=27.3
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCcEEEEEecChhHHH
Q 018819 89 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE 125 (350)
Q Consensus 89 ~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~r~~~~~~ 125 (350)
+-|.| .|-+|..+|+.|.++| +.|+..+++.....
T Consensus 3 IgiIG-~G~mG~~ia~~l~~~g-~~v~~~~~~~~~~~ 37 (152)
T d1i36a2 3 VGFIG-FGEVAQTLASRLRSRG-VEVVTSLEGRSPST 37 (152)
T ss_dssp EEEES-CSHHHHHHHHHHHHTT-CEEEECCTTCCHHH
T ss_pred EEEEc-HHHHHHHHHHHHHHCC-CeEEEEcCchhHHH
Confidence 45555 5999999999999999 58888877654443
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.77 E-value=1.1 Score=37.43 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=29.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEe
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMAC 118 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~ 118 (350)
.++|++++|-|- |-+|..+|+.|.+.|+ +|+.++
T Consensus 33 ~L~gktvaIqGf-GnVG~~~A~~L~e~Ga-kvv~vs 66 (293)
T d1hwxa1 33 GFGDKTFAVQGF-GNVGLHSMRYLHRFGA-KCVAVG 66 (293)
T ss_dssp SSTTCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEE
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEE
Confidence 578999999985 8999999999999997 666554
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=80.65 E-value=1 Score=36.70 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=29.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCcEEEEEe
Q 018819 83 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMAC 118 (350)
Q Consensus 83 ~l~~~~~lItGgs~gIG~~ia~~la~~Ga~~Vi~~~ 118 (350)
+++|++++|-| .|-+|..+|+.|.+.|+ +|+.++
T Consensus 28 ~l~g~~v~IqG-fGnVG~~~a~~L~~~Ga-kvv~vs 61 (242)
T d1v9la1 28 GIEGKTVAIQG-MGNVGRWTAYWLEKMGA-KVIAVS 61 (242)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHTTTC-EEEEEE
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCC-eEEEee
Confidence 46899999997 68999999999999997 666544
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=80.22 E-value=2.7 Score=33.15 Aligned_cols=78 Identities=19% Similarity=0.157 Sum_probs=51.6
Q ss_pred CCCEEEEEcCCCchHHH-HHHHHHHcCCcEEEEEecChhHHHHHHHHhccCC-CceEEEEccCCCHHHHHHHHHHHHHcC
Q 018819 85 RKGSVIITGASSGLGLA-TAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDLASLDSVRQFVDTFRRSG 162 (350)
Q Consensus 85 ~~~~~lItGgs~gIG~~-ia~~la~~Ga~~Vi~~~r~~~~~~~~~~~l~~~~-~~v~~~~~Dvs~~~~v~~~~~~~~~~~ 162 (350)
+|.++|-.|+++|--.+ +++.+...| +|+.++.+++..+.+.+.+...+ .++.++..|..+.. ...
T Consensus 75 ~g~~VLdiG~GtG~~s~~la~~~~~~g--~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~----------~~~ 142 (213)
T d1dl5a1 75 KGMRVLEIGGGTGYNAAVMSRVVGEKG--LVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV----------PEF 142 (213)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTC--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC----------GGG
T ss_pred ccceEEEecCccchhHHHHHHHhCCCC--cEEEeecchhhHHHhhhhHhhhcccccccccCchHHcc----------ccc
Confidence 56789999988775544 444443444 89999999887777777665443 35667777754311 112
Q ss_pred CCCcEEEEcccc
Q 018819 163 RPLDVLVCNAAV 174 (350)
Q Consensus 163 g~id~lv~~Ag~ 174 (350)
++.|.++.+++.
T Consensus 143 ~~fD~I~~~~~~ 154 (213)
T d1dl5a1 143 SPYDVIFVTVGV 154 (213)
T ss_dssp CCEEEEEECSBB
T ss_pred cchhhhhhhccH
Confidence 479999988775
|