Query 018824
Match_columns 350
No_of_seqs 231 out of 1362
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 06:37:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018824.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018824hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.3 6.3E-06 2.1E-10 66.9 11.4 70 177-246 35-105 (110)
2 2i68_A Protein EMRE; transmemb 98.2 5.2E-06 1.8E-10 70.2 8.4 66 180-245 38-104 (137)
3 4dve_A Biotin transporter BIOY 8.5 9.2E+02 0.031 20.6 8.3 89 171-261 16-109 (198)
4 3rlf_F Maltose transport syste 4.1 2.3E+03 0.077 20.7 8.0 11 213-223 51-61 (514)
5 2kv5_A FST, putative uncharact 2.4 7.5E+02 0.026 15.1 1.4 11 232-242 9-19 (33)
6 2llm_A Amyloid beta A4 protein 3.2 4.1E+02 0.014 17.4 0.0 25 218-242 6-30 (43)
7 1u7g_A Probable ammonium trans 2.2 3.3E+03 0.11 18.7 21.1 29 101-131 119-147 (385)
8 2bn5_B U1 small nuclear ribonu 1.6 1.3E+03 0.044 12.9 1.4 14 21-34 1-14 (26)
9 2wdq_D Succinate dehydrogenase 1.6 2.6E+03 0.09 15.5 6.4 20 323-342 58-77 (115)
10 3aqp_A Probable secdf protein- 1.5 5.2E+03 0.18 18.8 9.7 13 219-231 614-626 (741)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.30 E-value=6.3e-06 Score=66.91 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcchHHHHHH-HhhhHHHHHHHHHHHcCccCChhHHHHHHHHHHhhhhhcccc
Q 018824 177 PVAVCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE 246 (350)
Q Consensus 177 ~lgl~~~l~~~~~n~sl~~vsvs~~~ii-ka~~Pifv~lls~lflkEr~t~~~ilsllliv~GV~l~~~~e 246 (350)
...+++.++..+...++++.+++.+..+ ..+.|+++.+++++++||++++.+++|+.++++|+.++...+
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3334566778888999999999999888 899999999999999999999999999999999999876543
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.17 E-value=5.2e-06 Score=70.18 Aligned_cols=66 Identities=17% Similarity=0.222 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhhhcchHHHHHH-HhhhHHHHHHHHHHHcCccCChhHHHHHHHHHHhhhhhccc
Q 018824 180 VCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT 245 (350)
Q Consensus 180 l~~~l~~~~~n~sl~~vsvs~~~ii-ka~~Pifv~lls~lflkEr~t~~~ilsllliv~GV~l~~~~ 245 (350)
+++.++.++.+.++++++++.+..+ .++.|++++++++++++|++++.+++|++++++|+.++...
T Consensus 38 ~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3566678899999999999998888 89999999999999999999999999999999999987543
No 3
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=8.54 E-value=9.2e+02 Score=20.59 Aligned_cols=89 Identities=15% Similarity=0.053 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhhhHHHHHHHHHHHcCccCChhHHHHHHHHHHhhhhhccccccc-
Q 018824 171 LLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSF- 249 (350)
Q Consensus 171 ~~~~ll~lgl~~~l~~~~~n~sl~~vsvs~~~iika~~Pifv~lls~lflkEr~t~~~ilsllliv~GV~l~~~~e~~f- 249 (350)
+.+.+...+++-++-.+....+ .+++++.-+=..++.+.+++.+.++..++=.....+=+++..+|+=+.+.+....
T Consensus 16 k~r~l~~~alfaAliavla~i~--~Ipip~~pVPiTlQtl~V~LaG~~LG~r~G~lsv~lYlllG~~GlPVFagg~gG~~ 93 (198)
T 4dve_A 16 KVKTLTYSAFMTAFIIILGFLP--GIPIGFIPVPIILQNMGIMMAGGLLGPKYGTISVGAFLALALIGLPVLTGGNGGAA 93 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSC--CBCCSSSSCCBCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBTTTBCCSG
T ss_pred HHHHHHHHHHHHHHHHHHHHhc--cCCCCCCCcCccHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHcCccccCCCCchh
Confidence 4566666666544332332221 2333332222346777877777666555544455555666666655554332211
Q ss_pred ----cHHHHHHHHHHH
Q 018824 250 ----NWTGFISAMISN 261 (350)
Q Consensus 250 ----~~~G~~lal~S~ 261 (350)
...|+++.+.-+
T Consensus 94 ~l~gPTgGYLiGF~~a 109 (198)
T 4dve_A 94 SFLGPSGGYRIAWLFT 109 (198)
T ss_dssp GGGSTTHHHHHHHHHH
T ss_pred HHhcchhHHHHHHHHH
Confidence 135666665533
No 4
>3rlf_F Maltose transport system permease protein MALF; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 2r6g_F* 3puv_F* 3pux_F* 3puy_F* 3puz_F* 3pv0_F* 3puw_F* 3fh6_F
Probab=4.13 E-value=2.3e+03 Score=20.67 Aligned_cols=11 Identities=9% Similarity=0.135 Sum_probs=4.3
Q ss_pred HHHHHHHcCcc
Q 018824 213 AAASQFILGQQ 223 (350)
Q Consensus 213 ~lls~lflkEr 223 (350)
++..++++.+|
T Consensus 51 ~~~~~~~~~~~ 61 (514)
T 3rlf_F 51 SAGLYIFANRK 61 (514)
T ss_dssp HHHHHHHHCGG
T ss_pred HHHeEEEECCC
Confidence 33334444333
No 5
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=2.42 E-value=7.5e+02 Score=15.14 Aligned_cols=11 Identities=27% Similarity=0.887 Sum_probs=8.0
Q ss_pred HHHHHHhhhhh
Q 018824 232 LAPVVIGVSMA 242 (350)
Q Consensus 232 llliv~GV~l~ 242 (350)
++++++|+++.
T Consensus 9 IaPivVGvvl~ 19 (33)
T 2kv5_A 9 IAPIFVGLVLE 19 (33)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56788888764
No 6
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=3.17 E-value=4.1e+02 Score=17.36 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=12.8
Q ss_pred HHcCccCChhHHHHHHHHHHhhhhh
Q 018824 218 FILGQQLPLTLWLSLAPVVIGVSMA 242 (350)
Q Consensus 218 lflkEr~t~~~ilsllliv~GV~l~ 242 (350)
.|+.|.++..+-.-+.+.+.|++++
T Consensus 6 ~~~~~~~~~srga~iGL~v~gVai~ 30 (43)
T 2llm_A 6 VFFAEDVGSNKGAIIGLMVGGVVIA 30 (43)
Confidence 4555666555444444455555543
No 7
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=2.18 E-value=3.3e+03 Score=18.74 Aligned_cols=29 Identities=14% Similarity=0.287 Sum_probs=18.3
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 018824 101 FFDRYPALVTGFFFFMWYFLNVIFNILNKRI 131 (350)
Q Consensus 101 ~~~~~~~l~~~~~~~~W~~~s~~~~i~nK~i 131 (350)
..|+.|.....++..+|-.. .+.+.++++
T Consensus 119 vaeR~kf~a~lif~~l~~~~--vY~~~ahwv 147 (385)
T 1u7g_A 119 LAERIRFPAVLIFVVVWLTL--SYIPIAHMV 147 (385)
T ss_dssp HGGGBCHHHHHHHHHHHHHH--THHHHHHHH
T ss_pred hhccccHHHHHHHHHHHHHH--Hhhhhhhee
Confidence 56666766677777777442 344566666
No 8
>2bn5_B U1 small nuclear ribonucleoprotein 70 kDa; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster}
Probab=1.62 E-value=1.3e+03 Score=12.88 Aligned_cols=14 Identities=29% Similarity=0.389 Sum_probs=6.8
Q ss_pred cCccccCCcccccc
Q 018824 21 RSPLENHQNVSFIS 34 (350)
Q Consensus 21 ~~~~~~~~~~~~~~ 34 (350)
||+..+|.-+|+.+
T Consensus 1 rpppahhnmfsvpp 14 (26)
T 2bn5_B 1 RPPPAHHNMFSVPP 14 (26)
T ss_dssp CCCCCCCCCCSCCC
T ss_pred CcCCccCceecCCC
Confidence 44444555555444
No 9
>2wdq_D Succinate dehydrogenase hydrophobic membrane ANCH subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_D* 2acz_D* 1nek_D* 2wdr_D* 2wdv_D* 2wp9_D* 2wu2_D* 2ws3_D* 2wu5_D*
Probab=1.56 E-value=2.6e+03 Score=15.49 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018824 323 KFISDLFWVGMFYHLYNQVC 342 (350)
Q Consensus 323 ~~~~~l~~sGl~~~lyn~~s 342 (350)
++...++...++||..|-..
T Consensus 58 ~i~~~l~l~~~~~H~~~Gir 77 (115)
T 2wdq_D 58 KVFTLLALFSILIHAWIGMW 77 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666666544
No 10
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=1.46 E-value=5.2e+03 Score=18.75 Aligned_cols=13 Identities=15% Similarity=0.401 Sum_probs=5.9
Q ss_pred HcCccCChhHHHH
Q 018824 219 ILGQQLPLTLWLS 231 (350)
Q Consensus 219 flkEr~t~~~ils 231 (350)
+++..++...+++
T Consensus 614 l~g~~l~~~~i~~ 626 (741)
T 3aqp_A 614 LLGLEFSIPTIAA 626 (741)
T ss_dssp HHTCCCCHHHHHH
T ss_pred HHhcCccHHHHHH
Confidence 3444555444433
Done!