Query 018824
Match_columns 350
No_of_seqs 231 out of 1362
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 06:37:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018824.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018824hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2r6gf1 e.70.1.1 (F:13-260) Ma 5.9 6.4E+02 0.047 20.2 8.2 59 175-239 5-63 (248)
2 d1e12a_ f.13.1.1 (A:) Halorhod 2.8 9.6E+02 0.07 18.6 5.7 33 207-239 92-126 (239)
3 d2e74g1 f.23.26.1 (G:9-35) Pet 2.8 4.4E+02 0.032 13.7 3.1 18 252-269 3-20 (27)
4 d2h5na1 a.287.1.2 (A:1-132) Hy 2.4 6.3E+02 0.046 17.4 3.2 28 235-263 89-116 (132)
5 d1u7ga_ f.44.1.1 (A:) Ammonium 2.3 1.5E+03 0.11 18.8 20.1 85 209-295 239-327 (383)
6 d1v54l_ f.23.6.1 (L:) Mitochon 1.9 8.3E+02 0.06 14.4 5.3 31 91-124 4-34 (46)
7 d1uptb_ a.193.1.1 (B:) Golgi a 1.5 3.9E+02 0.029 16.8 0.6 20 213-232 11-30 (58)
8 d1eysh2 f.23.10.1 (H:7-43) Pho 1.5 9.1E+02 0.067 13.5 2.8 12 327-338 14-25 (37)
9 d2exna1 b.165.1.1 (A:1-128) Hy 1.3 5.1E+02 0.037 18.2 0.9 23 30-52 4-26 (128)
10 d2a65a1 f.54.1.1 (A:5-513) Na( 0.9 2.8E+03 0.21 16.8 7.1 142 198-340 347-503 (509)
No 1
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=5.90 E-value=6.4e+02 Score=20.19 Aligned_cols=59 Identities=10% Similarity=0.039 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhhhHHHHHHHHHHHcCccCChhHHHHHHHHHHhh
Q 018824 175 LIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGV 239 (350)
Q Consensus 175 ll~lgl~~~l~~~~~n~sl~~vsvs~~~iika~~Pifv~lls~lflkEr~t~~~ilsllliv~GV 239 (350)
++.+|++..+..+.....+..-+..++. ..-+.+.++.++++.+|.-+.|++ .+.+++.
T Consensus 5 ~~ll~l~~a~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~p~kyi--~PG~~~l 63 (248)
T d2r6gf1 5 WSVLGLLGLLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAWRYV--YPGMAGM 63 (248)
T ss_dssp HHHHHHHHHHHHHTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCTTHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHH----HHHHHHHheEEEEEccCccceehh--hhHHHHH
Confidence 4566776666555555555555544432 344566777888998888888874 3444443
No 2
>d1e12a_ f.13.1.1 (A:) Halorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=2.80 E-value=9.6e+02 Score=18.56 Aligned_cols=33 Identities=12% Similarity=0.026 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHcCccCC--hhHHHHHHHHHHhh
Q 018824 207 LEPFFNAAASQFILGQQLP--LTLWLSLAPVVIGV 239 (350)
Q Consensus 207 ~~Pifv~lls~lflkEr~t--~~~ilsllliv~GV 239 (350)
+.|+...-+..+...++-+ ......+++++.|-
T Consensus 92 TtPLll~~l~l~~~~~~~~~~~li~a~~~Miv~G~ 126 (239)
T d1e12a_ 92 STPMILLALGLLADVDLGSLFTVIAADIGMCVTGL 126 (239)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 4577766665544333222 22223455555553
No 3
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.78 E-value=4.4e+02 Score=13.68 Aligned_cols=18 Identities=11% Similarity=0.242 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018824 252 TGFISAMISNISFTYRSI 269 (350)
Q Consensus 252 ~G~~lal~S~l~~A~~~V 269 (350)
.|.+..-++.+.|+.|.-
T Consensus 3 lgli~~tl~glf~aayqq 20 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 466666677777777653
No 4
>d2h5na1 a.287.1.2 (A:1-132) Hypothetical protein PG1108 {Porphyromonas gingivalis [TaxId: 837]}
Probab=2.41 E-value=6.3e+02 Score=17.40 Aligned_cols=28 Identities=29% Similarity=0.304 Sum_probs=18.3
Q ss_pred HHHhhhhhccccccccHHHHHHHHHHHHH
Q 018824 235 VVIGVSMASLTELSFNWTGFISAMISNIS 263 (350)
Q Consensus 235 iv~GV~l~~~~e~~f~~~G~~lal~S~l~ 263 (350)
...||.+++-+|.+.|-.. +|.+++.+|
T Consensus 89 sylgvimasdgdiddnela-lwtlistlc 116 (132)
T d2h5na1 89 SYLGVIMASDGDIDDNELA-LWTLISTLC 116 (132)
T ss_dssp HHHHHHSCBTTBCCHHHHH-HHHHHHHHH
T ss_pred HHhhheeccCCCCCccHhH-HHHHHHHHh
Confidence 6689999988887765322 345555554
No 5
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=2.32 E-value=1.5e+03 Score=18.79 Aligned_cols=85 Identities=9% Similarity=0.008 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHcCccCChhHHHHHHHHHHhhhhhccccccccHHH-HHHHHH-HHHHHHHHHHHHhhhc--cCCCHHHHH
Q 018824 209 PFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTG-FISAMI-SNISFTYRSIYSKKAM--TDMDSTNIY 284 (350)
Q Consensus 209 Pifv~lls~lflkEr~t~~~ilsllliv~GV~l~~~~e~~f~~~G-~~lal~-S~l~~A~~~Vl~kk~~--~~l~~~~l~ 284 (350)
=.++.++...+.++|++....+.- ++.|.+-++.+....+.++ ++..++ +.+++-.+..+.+|+. +..+...+-
T Consensus 239 ~~~~~~~~~~~~~~k~~~~~~~nG--~LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~~iDD~~~~~~vH 316 (383)
T d1u7ga_ 239 AILGWIFGEWALRGLPSLLGACSG--AIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVH 316 (383)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHH--HHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCGGGHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHH--hhhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHHhhcccccccceEeeh
Confidence 334444444456778887765543 3445555443332334333 444433 3344444444444432 224445555
Q ss_pred HHHHHHHHHHH
Q 018824 285 AYISIIALFVC 295 (350)
Q Consensus 285 ~~~~~~s~l~L 295 (350)
..-.+++.+..
T Consensus 317 g~~Gi~G~l~~ 327 (383)
T d1u7ga_ 317 GVCGIVGCIMT 327 (383)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhHHHHHHHH
Confidence 44455554443
No 6
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=1.85 E-value=8.3e+02 Score=14.41 Aligned_cols=31 Identities=6% Similarity=0.050 Sum_probs=16.4
Q ss_pred CCCCCCCCCccccccchHHHHHHHHHHHHHHHHH
Q 018824 91 DSAGEAAPVRFFDRYPALVTGFFFFMWYFLNVIF 124 (350)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~~~~~~~~W~~~s~~~ 124 (350)
|+.|...|-+.. ..+++.....+++.+++..
T Consensus 4 eGPG~NLPFsv~---Nk~rLla~m~~~fGsgfa~ 34 (46)
T d1v54l_ 4 EGPGKNIPFSVE---NKWRLLAMMTLFFGSGFAA 34 (46)
T ss_dssp CSTTTSSSSCCS---SHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccch---hHHHHHHHHHHHHhccccc
Confidence 455554554432 3455666666666665543
No 7
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.52 E-value=3.9e+02 Score=16.83 Aligned_cols=20 Identities=0% Similarity=-0.077 Sum_probs=13.9
Q ss_pred HHHHHHHcCccCChhHHHHH
Q 018824 213 AAASQFILGQQLPLTLWLSL 232 (350)
Q Consensus 213 ~lls~lflkEr~t~~~ilsl 232 (350)
+++.++..+|..+..++++.
T Consensus 11 vLfeYMmG~E~~tlaKVi~a 30 (58)
T d1uptb_ 11 VLFEYMMGRETKTMAKVITT 30 (58)
T ss_dssp HHHHHHTTSSHHHHHHHHHH
T ss_pred HHHHHHcCcchhHHHHHHHH
Confidence 56677777887777776553
No 8
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=1.47 E-value=9.1e+02 Score=13.55 Aligned_cols=12 Identities=33% Similarity=0.534 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHH
Q 018824 327 DLFWVGMFYHLY 338 (350)
Q Consensus 327 ~l~~sGl~~~ly 338 (350)
.+|..|+.+++.
T Consensus 14 w~FFagLi~YL~ 25 (37)
T d1eysh2 14 WLFFFGLIIYLR 25 (37)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 366678877764
No 9
>d2exna1 b.165.1.1 (A:1-128) Hypothetical protein BB0938 {Bordetella bronchiseptica [TaxId: 518]}
Probab=1.26 E-value=5.1e+02 Score=18.21 Aligned_cols=23 Identities=9% Similarity=0.306 Sum_probs=11.6
Q ss_pred ccccccccccccCCCCccccccc
Q 018824 30 VSFISLKPIGAVGEGGNVIWGRQ 52 (350)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~ 52 (350)
+.+.++|.+++++-..-+..+|+
T Consensus 4 ~~~~PIKsc~g~~~~~gl~~DR~ 26 (128)
T d2exna1 4 TAYQPIAECGATTQSEAAAYQKR 26 (128)
T ss_dssp CCEEEETTTEEECCGGGGGTCCS
T ss_pred eeeecccccCCccccchhhhcee
Confidence 44666777776433333344443
No 10
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=0.91 E-value=2.8e+03 Score=16.83 Aligned_cols=142 Identities=11% Similarity=0.053 Sum_probs=0.0
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHcCccCChhHHHHHHHHHHhhhhhccc-----cccccHHHHHHHHHHHHHHHHHHHHHh
Q 018824 198 VSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT-----ELSFNWTGFISAMISNISFTYRSIYSK 272 (350)
Q Consensus 198 vs~~~iika~~Pifv~lls~lflkEr~t~~~ilsllliv~GV~l~~~~-----e~~f~~~G~~lal~S~l~~A~~~Vl~k 272 (350)
++..+.+...+++.+.+...+=.++|-.......++..+.|..+...+ |.-..-.+..+..+..+....+..-.+
T Consensus 347 ~gl~s~i~~~e~~v~~l~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~l~e~i~v~w~yg~~ 426 (509)
T d2a65a1 347 AGLTSSIAIMQPMIAFLEDELKLSRKHAVLWTAAIVFFSAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGAD 426 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHBTTHHHHHHHHTTTHHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHhccccchhHHHHHhcCCchhhhhhheeEEEEhhhhHHHHhcchHHHHHHHHHHHHHHHHHHHHHheeeeEecHH
Q ss_pred hhccCCCHH----------HHHHHHHHHHHHHHHHHHHHhcCchhhhcchhhhhhhhchHHHHHHHHHHHHHHHHHHH
Q 018824 273 KAMTDMDST----------NIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQ 340 (350)
Q Consensus 273 k~~~~l~~~----------~l~~~~~~~s~l~Llp~al~~Eg~~~~~~~~~~~~~~~g~~~~~~~l~~sGl~~~lyn~ 340 (350)
|..++++.+ ....|..++..+.++...+....+....+.....-...+. .+...+.++...+..+.+
T Consensus 427 r~~~di~~~~~~~~~~~~~~~~~~i~Pi~l~~ili~~~~~~~~~~~~~~~~~~w~~~~~-~~~~~~~~~~~~~i~~~~ 503 (509)
T d2a65a1 427 KAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWITRFY-IIGLFLFLTFLVFLAERR 503 (509)
T ss_dssp HHHHHHHTTCSSCCCTHHHHHHHTHHHHHHHHHHHHHHHHTHHHHHHSSCTTHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHheeeeeHhhhhheeehhHhhccccccCCcCCchHHHHHH-HHHHHHHHHHHHHHHHHH
Done!