BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018825
         (350 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone
          Deacetylases By Myocyte Enhancer Factor-2
 pdb|1TQE|Q Chain Q, Mechanism Of Recruitment Of Class Ii Histone
          Deacetylases By Myocyte Enhancer Factor-2
 pdb|1TQE|R Chain R, Mechanism Of Recruitment Of Class Ii Histone
          Deacetylases By Myocyte Enhancer Factor-2
 pdb|1TQE|S Chain S, Mechanism Of Recruitment Of Class Ii Histone
          Deacetylases By Myocyte Enhancer Factor-2
          Length = 93

 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 2/92 (2%)

Query: 1  MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANEXXXXXXXXXXXXMFSPTGKPSLCNGK 60
          MGR K++I ++ +   RQ T+ KRK G+MKKA E            +F+   +  L    
Sbjct: 1  MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANR--LFQYA 58

Query: 61 RSSIEEVIAKFAQLTPQERAKRKLESLEALKK 92
           + ++ V+ K+ + +    ++   + LE LK+
Sbjct: 59 STDMDRVLLKYTEYSEPHESRTNTDILETLKR 90


>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX
          Crystal Structure
 pdb|1MNM|B Chain B, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX
          Crystal Structure
          Length = 100

 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 28/50 (56%)

Query: 3  RVKLKIKKLENTNGRQATYAKRKHGIMKKANEXXXXXXXXXXXXMFSPTG 52
          R K++IK +EN   R  T++KRKHGIMKKA E            + S TG
Sbjct: 18 RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETG 67


>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely
          Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND
          RECRUITS Transcription Co-Factors
 pdb|3KOV|B Chain B, Structure Of Mef2a Bound To Dna Reveals A Completely
          Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND
          RECRUITS Transcription Co-Factors
 pdb|3KOV|I Chain I, Structure Of Mef2a Bound To Dna Reveals A Completely
          Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND
          RECRUITS Transcription Co-Factors
 pdb|3KOV|J Chain J, Structure Of Mef2a Bound To Dna Reveals A Completely
          Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND
          RECRUITS Transcription Co-Factors
 pdb|3P57|A Chain A, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
          On Dna
 pdb|3P57|B Chain B, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
          On Dna
 pdb|3P57|C Chain C, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
          On Dna
 pdb|3P57|D Chain D, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
          On Dna
 pdb|3P57|I Chain I, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
          On Dna
 pdb|3P57|J Chain J, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
          On Dna
          Length = 90

 Score = 40.4 bits (93), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 2  GRVKLKIKKLENTNGRQATYAKRKHGIMKKANEXXXXXXXXXXXXMFSPTGKPSLCNGKR 61
          GR K++I ++ +   RQ T+ KRK G+MKKA E            +F+ + K  L     
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNK--LFQYAS 58

Query: 62 SSIEEVIAKFAQLTPQERAKRKLESLEALKK 92
          + +++V+ K+ +      ++   + +EAL K
Sbjct: 59 TDMDKVLLKYTEYNEPHESRTNSDIVEALNK 89


>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of
          Histone Deacetylases By Myocyte Enhancer Factor-2
 pdb|1N6J|B Chain B, Structural Basis Of Sequence-Specific Recruitment Of
          Histone Deacetylases By Myocyte Enhancer Factor-2
          Length = 93

 Score = 40.4 bits (93), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 2  GRVKLKIKKLENTNGRQATYAKRKHGIMKKANEXXXXXXXXXXXXMFSPTGKPSLCNGKR 61
          GR K++I ++ +   RQ T+ KRK G+MKKA E            +F+   +  L     
Sbjct: 1  GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANR--LFQYAS 58

Query: 62 SSIEEVIAKFAQLTPQERAKRKLESLEALKK 92
          + ++ V+ K+ + +    ++   + LE LK+
Sbjct: 59 TDMDRVLLKYTEYSEPHESRTNTDILETLKR 89


>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna
 pdb|1EGW|B Chain B, Crystal Structure Of Mef2a Core Bound To Dna
 pdb|1EGW|C Chain C, Crystal Structure Of Mef2a Core Bound To Dna
 pdb|1EGW|D Chain D, Crystal Structure Of Mef2a Core Bound To Dna
          Length = 77

 Score = 38.1 bits (87), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 2  GRVKLKIKKLENTNGRQATYAKRKHGIMKKANEXXXXXXXXXXXXMFSPTGKPSLCNGKR 61
          GR K++I ++ +   RQ T+ KRK G+MKKA E            +F+ + K  L     
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNK--LFQYAS 58

Query: 62 SSIEEVIAKFAQ 73
          + +++V+ K+ +
Sbjct: 59 TDMDKVLLKYTE 70


>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific
          Sre Dna
 pdb|1SRS|B Chain B, Serum Response Factor (Srf) Core Complexed With Specific
          Sre Dna
 pdb|1HBX|A Chain A, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
 pdb|1HBX|B Chain B, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
 pdb|1HBX|D Chain D, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
 pdb|1HBX|E Chain E, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
          Length = 92

 Score = 37.7 bits (86), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 2  GRVKLKIKKLENTNGRQATYAKRKHGIMKKANEXXXXXXXXXXXXMFSPTG 52
          GRVK+K++ ++N   R  T++KRK GIMKKA E            + S TG
Sbjct: 11 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETG 61


>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases
          To Myocyte Enhancer Factor-2 By Small Molecules
 pdb|3MU6|B Chain B, Inhibiting The Binding Of Class Iia Histone Deacetylases
          To Myocyte Enhancer Factor-2 By Small Molecules
 pdb|3MU6|C Chain C, Inhibiting The Binding Of Class Iia Histone Deacetylases
          To Myocyte Enhancer Factor-2 By Small Molecules
 pdb|3MU6|D Chain D, Inhibiting The Binding Of Class Iia Histone Deacetylases
          To Myocyte Enhancer Factor-2 By Small Molecules
          Length = 71

 Score = 37.7 bits (86), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 2  GRVKLKIKKLENTNGRQATYAKRKHGIMKKANE 34
          GR K++I ++ +   RQ T+ KRK G+MKKA E
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYE 33


>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The
          Transcription Factor Mef2a With A 20mer Oligonucleotide
 pdb|1C7U|B Chain B, Complex Of The Dna Binding Core Domain Of The
          Transcription Factor Mef2a With A 20mer Oligonucleotide
          Length = 85

 Score = 37.4 bits (85), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 2/87 (2%)

Query: 2  GRVKLKIKKLENTNGRQATYAKRKHGIMKKANEXXXXXXXXXXXXMFSPTGKPSLCNGKR 61
          GR K++I ++ +   RQ T+ KRK G+MKKA E            +F+ + K  L     
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNK--LFQYAS 58

Query: 62 SSIEEVIAKFAQLTPQERAKRKLESLE 88
          + +++V+ K+ +      ++   + +E
Sbjct: 59 TDMDKVLLKYTEYNEPHESRTNSDIVE 85


>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna
          Complex
 pdb|1K6O|C Chain C, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna
          Complex
          Length = 103

 Score = 37.0 bits (84), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 2  GRVKLKIKKLENTNGRQATYAKRKHGIMKKANEXXXXXXXXXXXXMFSPTG 52
          GRVK+K++ ++N   R  T++KRK GIMKKA E            + S TG
Sbjct: 10 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETG 60


>pdb|2J1Y|A Chain A, Human P53 Core Domain Mutant M133l-V203a-N239y-G245s-N268d
 pdb|2J1Y|B Chain B, Human P53 Core Domain Mutant M133l-V203a-N239y-G245s-N268d
 pdb|2J1Y|C Chain C, Human P53 Core Domain Mutant M133l-V203a-N239y-G245s-N268d
 pdb|2J1Y|D Chain D, Human P53 Core Domain Mutant M133l-V203a-N239y-G245s-N268d
          Length = 200

 Score = 30.4 bits (67), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 8/140 (5%)

Query: 89  ALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQARLLQSQ-LSEMHRRLRY---WTNPDKI 144
           AL K F +L     VQ ++ ++      +   A   QSQ ++E+ RR  +    ++ D +
Sbjct: 36  ALNKLFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGL 95

Query: 145 NSVEHLGQMENSLR----DSLNHLRMHKENLGKQELMSLECTTQFQNGICIPFRMGSEEQ 200
              +HL ++E +LR    D  N  R       +   +  +CTT   N +C    MGS  +
Sbjct: 96  APPQHLIRVEGNLRAEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCYSSCMGSMNR 155

Query: 201 LQTLSWIPNNDNRHMVLPED 220
              L+ I   D+   +L  D
Sbjct: 156 RPILTIITLEDSSGNLLGRD 175


>pdb|3Q46|A Chain A, Magnesium Activated Inorganic Pyrophosphatase From
           Thermococcus Thioreducens Bound To Hydrolyzed Product At
           0.99 Angstrom Resolution
          Length = 178

 Score = 29.6 bits (65), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 116 DLTNQARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGKQE 175
           D+++  +    +++   +R +      K   +E  G  E + R+ L  + M+KE  GK+E
Sbjct: 121 DISDVPKAFLDEIAHFFQRYKELQG--KTTKIEGWGNAEEAKREILRAIEMYKEKFGKEE 178


>pdb|3I98|A Chain A, X-Ray Crystallographic Structure Of Inorganic
           Pyrophosphatase At 298k From Archaeon Thermococcus
           Thioreducens
 pdb|3I98|B Chain B, X-Ray Crystallographic Structure Of Inorganic
           Pyrophosphatase At 298k From Archaeon Thermococcus
           Thioreducens
 pdb|3I98|C Chain C, X-Ray Crystallographic Structure Of Inorganic
           Pyrophosphatase At 298k From Archaeon Thermococcus
           Thioreducens
 pdb|3I98|D Chain D, X-Ray Crystallographic Structure Of Inorganic
           Pyrophosphatase At 298k From Archaeon Thermococcus
           Thioreducens
 pdb|3I98|E Chain E, X-Ray Crystallographic Structure Of Inorganic
           Pyrophosphatase At 298k From Archaeon Thermococcus
           Thioreducens
 pdb|3I98|F Chain F, X-Ray Crystallographic Structure Of Inorganic
           Pyrophosphatase At 298k From Archaeon Thermococcus
           Thioreducens
 pdb|3Q4W|A Chain A, The Structure Of Archaeal Inorganic Pyrophosphatase In
           Complex With Substrate
 pdb|3Q5V|A Chain A, The Structure Of Inorganic Pyrophosphatase From
           Thermococcus Thioreducens In Complex With Magnesium And
           Sulfate
 pdb|3Q5V|B Chain B, The Structure Of Inorganic Pyrophosphatase From
           Thermococcus Thioreducens In Complex With Magnesium And
           Sulfate
 pdb|3Q9M|A Chain A, The Structure Archaeal Inorganic Pyrophosphatase In
           Complex With Pyrophosphate
 pdb|3Q9M|B Chain B, The Structure Archaeal Inorganic Pyrophosphatase In
           Complex With Pyrophosphate
 pdb|3Q9M|C Chain C, The Structure Archaeal Inorganic Pyrophosphatase In
           Complex With Pyrophosphate
 pdb|3Q3L|A Chain A, The Neutron Crystallographic Structure Of Inorganic
           Pyrophosphatase From Thermococcus Thioreducens
 pdb|3Q3L|B Chain B, The Neutron Crystallographic Structure Of Inorganic
           Pyrophosphatase From Thermococcus Thioreducens
 pdb|3Q3L|C Chain C, The Neutron Crystallographic Structure Of Inorganic
           Pyrophosphatase From Thermococcus Thioreducens
 pdb|3Q3L|D Chain D, The Neutron Crystallographic Structure Of Inorganic
           Pyrophosphatase From Thermococcus Thioreducens
 pdb|3Q3L|E Chain E, The Neutron Crystallographic Structure Of Inorganic
           Pyrophosphatase From Thermococcus Thioreducens
 pdb|3Q3L|F Chain F, The Neutron Crystallographic Structure Of Inorganic
           Pyrophosphatase From Thermococcus Thioreducens
 pdb|3R5U|A Chain A, The Structure Of Manganese Bound Thermococcus Thioreducens
           Inorganic Pyrophosphatase
 pdb|3R5U|B Chain B, The Structure Of Manganese Bound Thermococcus Thioreducens
           Inorganic Pyrophosphatase
 pdb|3R5V|A Chain A, The Structure Of Calcium Bound Thermococcus Thioreducens
           Inorganic Pyrophosphatase At 298k
 pdb|3R5V|B Chain B, The Structure Of Calcium Bound Thermococcus Thioreducens
           Inorganic Pyrophosphatase At 298k
 pdb|3R5V|C Chain C, The Structure Of Calcium Bound Thermococcus Thioreducens
           Inorganic Pyrophosphatase At 298k
 pdb|3R5V|D Chain D, The Structure Of Calcium Bound Thermococcus Thioreducens
           Inorganic Pyrophosphatase At 298k
 pdb|3R5V|E Chain E, The Structure Of Calcium Bound Thermococcus Thioreducens
           Inorganic Pyrophosphatase At 298k
 pdb|3R5V|F Chain F, The Structure Of Calcium Bound Thermococcus Thioreducens
           Inorganic Pyrophosphatase At 298k
          Length = 178

 Score = 29.6 bits (65), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 116 DLTNQARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGKQE 175
           D+++  +    +++   +R +      K   +E  G  E + R+ L  + M+KE  GK+E
Sbjct: 121 DISDVPKAFLDEIAHFFQRYKELQG--KTTKIEGWGNAEEAKREILRAIEMYKEKFGKEE 178


>pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain
 pdb|2QA5|B Chain B, Crystal Structure Of Sept2 G-Domain
          Length = 315

 Score = 28.5 bits (62), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 61  RSSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQ 120
           + +I  VIAK   LT +ER + K   L+ ++      +H++ +       S   ED   Q
Sbjct: 174 KVNIVPVIAKADTLTLKERERLKKRILDEIE------EHNIKIYHLPDAESDEDEDFKEQ 227

Query: 121 ARLLQSQL 128
            RLL++ +
Sbjct: 228 TRLLKASI 235


>pdb|4E2K|A Chain A, The Structure Of The S. Aureus Dnag Rna Polymerase Domain
 pdb|4EDG|A Chain A, The Structure Of The S. Aureus Dnag Rna Polymerase Domain
           Bound To Atp And Manganese
 pdb|4EDK|A Chain A, The Structure Of The S. Aureus Dnag Rna Polymerase Domain
           Bound To Gtp And Manganese
 pdb|4EDR|A Chain A, The Structure Of The S. Aureus Dnag Rna Polymerase Domain
           Bound To Utp And Manganese
 pdb|4EDT|A Chain A, The Structure Of The S. Aureus Dnag Rna Polymerase Domain
           Bound To Ppgpp And Manganese
 pdb|4EDV|A Chain A, The Structure Of The S. Aureus Dnag Rna Polymerase Domain
           Bound To Pppgpp And Manganese
 pdb|4EE1|A Chain A, The Structure Of The S. Aureus Dnag Rna Polymerase Domain
           Bound To Ctp And Manganese
          Length = 329

 Score = 28.1 bits (61), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 30/58 (51%)

Query: 75  TPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQARLLQSQLSEMH 132
           TP  + ++ L +L+  +K+ +KLD  V ++ F+         L N    + +QLS+ H
Sbjct: 130 TPIFQKRKLLYNLDKARKSIRKLDEIVLLEGFMDVIKSDTAGLKNVVATMGTQLSDEH 187


>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
          Length = 361

 Score = 28.1 bits (61), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 61  RSSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQ 120
           + +I  VIAK   LT +ER + K   L+ ++      +H++ +       S   ED   Q
Sbjct: 174 KVNIVPVIAKADTLTLKERERLKKRILDEIE------EHNIKIYHLPDAESDEDEDFKEQ 227

Query: 121 ARLLQSQL 128
            RLL++ +
Sbjct: 228 TRLLKASI 235


>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp
 pdb|2QNR|B Chain B, Human Septin 2 In Complex With Gdp
          Length = 301

 Score = 28.1 bits (61), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 61  RSSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQ 120
           + +I  VIAK   LT +ER + K   L+ ++      +H++ +       S   ED   Q
Sbjct: 155 KVNIVPVIAKADTLTLKERERLKKRILDEIE------EHNIKIYHLPDAESDEDEDFKEQ 208

Query: 121 ARLLQSQL 128
            RLL++ +
Sbjct: 209 TRLLKASI 216


>pdb|3Q88|A Chain A, Glucose-6-Phosphate Isomerase From Francisella Tularensis
           Complexed With Ribose 1,5-Bisphosphate.
 pdb|3Q7I|A Chain A, Glucose-6-Phosphate Isomerase From Francisella Tularensis
           Complexed With 6-Phosphogluconic Acid
          Length = 543

 Score = 28.1 bits (61), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 26/54 (48%)

Query: 106 FLGTSSQTIEDLTNQARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRD 159
           +   S   I D   ++ L  ++ S +  +++   N  KINS EH   +  +LRD
Sbjct: 43  YFDYSKNLINDYILKSLLESAEKSSLKDKIKQMFNGAKINSTEHRAVLHTALRD 96


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.130    0.373 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,207,354
Number of Sequences: 62578
Number of extensions: 332521
Number of successful extensions: 645
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 627
Number of HSP's gapped (non-prelim): 24
length of query: 350
length of database: 14,973,337
effective HSP length: 100
effective length of query: 250
effective length of database: 8,715,537
effective search space: 2178884250
effective search space used: 2178884250
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)