Query 018825
Match_columns 350
No_of_seqs 292 out of 1441
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 04:21:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018825.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018825hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0014 MADS box transcription 100.0 1.5E-34 3.1E-39 261.4 5.0 176 1-182 1-183 (195)
2 cd00265 MADS_MEF2_like MEF2 (m 100.0 8.9E-30 1.9E-34 198.5 2.1 73 2-76 1-73 (77)
3 cd00266 MADS_SRF_like SRF-like 99.9 2.4E-28 5.2E-33 193.1 3.8 79 2-81 1-79 (83)
4 smart00432 MADS MADS domain. 99.9 8.9E-27 1.9E-31 172.1 2.9 58 2-59 1-58 (59)
5 cd00120 MADS MADS: MCM1, Agamo 99.9 3E-26 6.5E-31 169.4 2.5 58 2-59 1-58 (59)
6 PF00319 SRF-TF: SRF-type tran 99.9 2E-24 4.3E-29 154.8 -4.9 51 9-59 1-51 (51)
7 KOG0015 Regulator of arginine 99.7 1.2E-18 2.7E-23 163.3 0.6 66 2-69 63-128 (338)
8 PF01486 K-box: K-box region; 99.4 1.1E-12 2.3E-17 107.2 7.8 85 113-197 13-98 (100)
9 COG5068 ARG80 Regulator of arg 99.3 4.9E-13 1.1E-17 131.1 1.1 65 1-67 81-145 (412)
10 PF07106 TBPIP: Tat binding pr 87.9 5.4 0.00012 35.3 9.8 59 111-169 108-166 (169)
11 PRK04098 sec-independent trans 82.1 3.7 7.9E-05 36.4 5.8 82 42-159 14-95 (158)
12 KOG4603 TBP-1 interacting prot 75.7 52 0.0011 29.7 11.0 133 35-179 44-182 (201)
13 PF10584 Proteasome_A_N: Prote 69.0 1.4 3.1E-05 26.5 -0.2 15 42-56 2-16 (23)
14 PHA03155 hypothetical protein; 65.8 44 0.00096 28.0 7.9 58 111-168 7-65 (115)
15 PF14723 SSFA2_C: Sperm-specif 60.8 24 0.00052 31.7 5.8 19 148-166 159-177 (179)
16 PRK01919 tatB sec-independent 55.2 35 0.00077 30.6 6.0 28 43-74 15-42 (169)
17 PF05812 Herpes_BLRF2: Herpesv 53.5 68 0.0015 27.1 7.1 56 113-168 4-64 (118)
18 COG3883 Uncharacterized protei 50.5 84 0.0018 30.2 8.1 24 147-170 79-102 (265)
19 PF07544 Med9: RNA polymerase 48.0 89 0.0019 24.4 6.7 43 115-159 24-70 (83)
20 PF10168 Nup88: Nuclear pore c 48.0 1.8E+02 0.0038 32.0 11.1 12 62-73 535-546 (717)
21 PHA03162 hypothetical protein; 45.5 1.5E+02 0.0032 25.6 7.9 58 112-169 13-75 (135)
22 PRK09841 cryptic autophosphory 43.8 3.2E+02 0.0068 29.9 12.4 108 65-173 247-367 (726)
23 PF15030 DUF4527: Protein of u 43.7 1E+02 0.0022 29.4 7.3 26 146-171 45-70 (277)
24 PF13870 DUF4201: Domain of un 42.5 1.1E+02 0.0023 27.1 7.2 58 115-172 9-66 (177)
25 PRK04654 sec-independent trans 41.1 46 0.00099 30.9 4.6 27 43-73 15-41 (214)
26 PF11559 ADIP: Afadin- and alp 40.9 2.3E+02 0.005 24.2 14.0 51 114-172 68-118 (151)
27 COG4575 ElaB Uncharacterized c 40.0 1.4E+02 0.003 24.7 6.7 51 115-172 11-61 (104)
28 KOG0933 Structural maintenance 39.1 4.2E+02 0.0092 30.4 12.1 28 47-76 654-681 (1174)
29 KOG0994 Extracellular matrix g 37.6 2.4E+02 0.0052 32.9 10.0 61 112-172 1225-1291(1758)
30 PHA02592 52 DNA topisomerase I 37.5 4.8E+02 0.011 26.9 12.4 29 42-74 298-326 (439)
31 PF06005 DUF904: Protein of un 36.1 74 0.0016 24.4 4.4 24 145-168 1-24 (72)
32 KOG2264 Exostosin EXT1L [Signa 35.7 3.5E+02 0.0076 29.1 10.4 61 262-323 230-315 (907)
33 KOG4672 Uncharacterized conser 35.6 1.9E+02 0.004 29.7 8.1 41 143-183 65-112 (487)
34 PF10805 DUF2730: Protein of u 33.3 1.2E+02 0.0027 24.7 5.6 30 113-142 36-65 (106)
35 COG2433 Uncharacterized conser 32.5 2.3E+02 0.0051 30.5 8.6 17 149-165 451-467 (652)
36 PF07106 TBPIP: Tat binding pr 32.4 2.1E+02 0.0045 25.1 7.3 29 144-172 108-136 (169)
37 PF06657 Cep57_MT_bd: Centroso 31.9 2.4E+02 0.0053 21.9 7.7 53 116-171 21-73 (79)
38 PRK11637 AmiB activator; Provi 31.0 2.3E+02 0.0049 28.8 8.3 10 229-238 311-320 (428)
39 PRK11519 tyrosine kinase; Prov 29.6 7E+02 0.015 27.2 12.2 37 64-100 246-282 (719)
40 PRK01770 sec-independent trans 29.4 95 0.0021 27.9 4.6 36 34-75 8-43 (171)
41 KOG4603 TBP-1 interacting prot 27.3 1.3E+02 0.0029 27.1 5.0 59 113-171 80-142 (201)
42 PF06008 Laminin_I: Laminin Do 26.6 5.4E+02 0.012 24.1 9.8 56 113-168 88-143 (264)
43 COG1579 Zn-ribbon protein, pos 26.4 5.6E+02 0.012 24.3 12.4 22 145-166 86-107 (239)
44 PF01502 PRA-CH: Phosphoribosy 26.0 12 0.00025 29.2 -1.6 38 16-53 17-63 (75)
45 COG0139 HisI Phosphoribosyl-AM 25.8 23 0.0005 29.6 0.0 40 16-55 49-97 (111)
46 TIGR00634 recN DNA repair prot 25.4 5.9E+02 0.013 26.9 10.5 15 61-75 143-157 (563)
47 PRK11637 AmiB activator; Provi 25.0 3E+02 0.0065 27.9 8.0 20 149-168 104-123 (428)
48 TIGR03185 DNA_S_dndD DNA sulfu 24.9 5.6E+02 0.012 27.6 10.3 7 255-261 553-559 (650)
49 PF09158 MotCF: Bacteriophage 24.6 29 0.00064 28.5 0.4 54 5-75 19-73 (103)
50 PF06698 DUF1192: Protein of u 24.1 1.9E+02 0.0042 21.4 4.6 30 138-167 13-43 (59)
51 PF12252 SidE: Dot/Icm substra 23.5 5.9E+02 0.013 29.6 10.0 44 114-164 1133-1176(1439)
52 PF03233 Cauli_AT: Aphid trans 23.3 3.2E+02 0.007 24.4 6.7 45 116-169 115-159 (163)
53 PRK10884 SH3 domain-containing 22.8 5.2E+02 0.011 23.8 8.3 14 117-130 98-111 (206)
54 TIGR01478 STEVOR variant surfa 22.6 1.7E+02 0.0036 28.6 5.2 45 7-73 25-69 (295)
55 PF15188 CCDC-167: Coiled-coil 21.5 4.2E+02 0.0091 21.1 6.9 47 114-165 7-53 (85)
56 KOG2751 Beclin-like protein [S 21.4 3E+02 0.0065 28.4 6.9 16 149-164 247-262 (447)
57 TIGR02231 conserved hypothetic 21.2 9.4E+02 0.02 25.0 11.5 28 144-171 123-150 (525)
58 PF09941 DUF2173: Uncharacteri 21.1 65 0.0014 26.8 1.8 41 32-75 3-43 (108)
59 KOG4673 Transcription factor T 20.2 1.1E+03 0.023 26.2 10.8 17 166-182 604-620 (961)
60 PRK00182 tatB sec-independent 20.2 85 0.0018 27.9 2.5 35 34-74 9-43 (160)
61 PF11629 Mst1_SARAH: C termina 20.1 1.9E+02 0.0042 20.6 3.7 24 144-167 7-34 (49)
No 1
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=100.00 E-value=1.5e-34 Score=261.37 Aligned_cols=176 Identities=30% Similarity=0.464 Sum_probs=124.9
Q ss_pred CCCccceeEEeccCCCCceeccccccchhhhhhhhhhccccceeehhcCCCCCCCCCCCCcchHHHHHHHHhhhChHHHH
Q 018825 1 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSSIEEVIAKFAQLTPQERA 80 (350)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTf~KRr~GL~KKA~ELSvLCdaeVaLIiFSp~GKl~ef~s~~ssme~VLeRY~~~s~~er~ 80 (350)
|||+||+|+||+|+++|||||+|||+||||||+||||||||+||||||||+|++|+||+++.+|.+|++||...+..++.
T Consensus 1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 80 (195)
T KOG0014|consen 1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK 80 (195)
T ss_pred CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999998545599999999998877665
Q ss_pred hhhHHHHHHHHHH-HHhhhhhhhhHhHhcCCcchHHHHHHHHHHHHHHHHHHh---HhhcccCCCC-CCCCH-HHHHHHH
Q 018825 81 KRKLESLEALKKT-FKKLDHDVNVQEFLGTSSQTIEDLTNQARLLQSQLSEMH---RRLRYWTNPD-KINSV-EHLGQME 154 (350)
Q Consensus 81 k~~~~~le~L~k~-~kKLd~e~~i~~~~~~~~~~vE~L~~ei~~Lq~qleelq---~rlr~~~ged-~~LSv-eEL~qLE 154 (350)
+........+... +.++........ .....+......+....+.+. ...+.+.+++ ..+++ ++|..++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~ 154 (195)
T KOG0014|consen 81 KKRVNLESFLRNKKLTELVEEEEKEE------LKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLE 154 (195)
T ss_pred ccccchhhHhhhhhhhcccchhhhhh------ccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchh
Confidence 5433332222211 111110000000 000112223333333333333 3355666666 66777 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-hhhhh
Q 018825 155 NSLRDSLNHLRMHKENLGKQELM-SLECT 182 (350)
Q Consensus 155 ~qLe~sL~~IR~RK~qL~~~ql~-~Lq~k 182 (350)
.+|+.++..+|.++...+.+++. .++.+
T Consensus 155 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (195)
T KOG0014|consen 155 SQLESSLHNSRSSKSKPLSDSNFQVLQEK 183 (195)
T ss_pred hHHHHhhcCCCCCCCcCCcchhhhhhccc
Confidence 99999999999999888777765 44433
No 2
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.95 E-value=8.9e-30 Score=198.48 Aligned_cols=73 Identities=41% Similarity=0.793 Sum_probs=70.4
Q ss_pred CCccceeEEeccCCCCceeccccccchhhhhhhhhhccccceeehhcCCCCCCCCCCCCcchHHHHHHHHhhhCh
Q 018825 2 GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSSIEEVIAKFAQLTP 76 (350)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTf~KRr~GL~KKA~ELSvLCdaeVaLIiFSp~GKl~ef~s~~ssme~VLeRY~~~s~ 76 (350)
||+||+|++|||+.+|+|||+|||.||||||+||||||||+||||||||+|+++.|++ +++++||+||.+.+.
T Consensus 1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s--~s~~~vl~ry~~~~~ 73 (77)
T cd00265 1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSS--PSMEKIIERYQKTSG 73 (77)
T ss_pred CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecC--CCHHHHHHHHHhccc
Confidence 8999999999999999999999999999999999999999999999999999999987 788999999998764
No 3
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.94 E-value=2.4e-28 Score=193.12 Aligned_cols=79 Identities=42% Similarity=0.741 Sum_probs=73.7
Q ss_pred CCccceeEEeccCCCCceeccccccchhhhhhhhhhccccceeehhcCCCCCCCCCCCCcchHHHHHHHHhhhChHHHHh
Q 018825 2 GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSSIEEVIAKFAQLTPQERAK 81 (350)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTf~KRr~GL~KKA~ELSvLCdaeVaLIiFSp~GKl~ef~s~~ssme~VLeRY~~~s~~er~k 81 (350)
||+||+|++|+|+.+|+|||+|||.||+|||+||||||||+||+|||||+|+++.||++.. +..||+||...+..++.+
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~ 79 (83)
T cd00266 1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSE-VEGVISRFEVLSALERKK 79 (83)
T ss_pred CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHH-HHHHHHHHhhcCHhhhhc
Confidence 8999999999999999999999999999999999999999999999999999999997433 999999999998876654
No 4
>smart00432 MADS MADS domain.
Probab=99.93 E-value=8.9e-27 Score=172.14 Aligned_cols=58 Identities=50% Similarity=0.883 Sum_probs=57.1
Q ss_pred CCccceeEEeccCCCCceeccccccchhhhhhhhhhccccceeehhcCCCCCCCCCCC
Q 018825 2 GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNG 59 (350)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTf~KRr~GL~KKA~ELSvLCdaeVaLIiFSp~GKl~ef~s 59 (350)
||+||+|++|+|+..|++||+|||.||+|||+||||||||+||||||||+|+++.||+
T Consensus 1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~ 58 (59)
T smart00432 1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFAS 58 (59)
T ss_pred CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccC
Confidence 8999999999999999999999999999999999999999999999999999999986
No 5
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.92 E-value=3e-26 Score=169.41 Aligned_cols=58 Identities=47% Similarity=0.836 Sum_probs=57.0
Q ss_pred CCccceeEEeccCCCCceeccccccchhhhhhhhhhccccceeehhcCCCCCCCCCCC
Q 018825 2 GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNG 59 (350)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTf~KRr~GL~KKA~ELSvLCdaeVaLIiFSp~GKl~ef~s 59 (350)
||+||+|++|+|+..|++||+|||.||+|||+||||||||+||+|||||+|+++.||+
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~ 58 (59)
T cd00120 1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWS 58 (59)
T ss_pred CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccC
Confidence 8999999999999999999999999999999999999999999999999999999986
No 6
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.86 E-value=2e-24 Score=154.79 Aligned_cols=51 Identities=47% Similarity=0.827 Sum_probs=46.3
Q ss_pred EEeccCCCCceeccccccchhhhhhhhhhccccceeehhcCCCCCCCCCCC
Q 018825 9 KKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNG 59 (350)
Q Consensus 9 k~Ien~~~RqvTf~KRr~GL~KKA~ELSvLCdaeVaLIiFSp~GKl~ef~s 59 (350)
|+|+|+..|++||+|||.||+|||.|||+||||+||||||||+|+++.|++
T Consensus 1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s 51 (51)
T PF00319_consen 1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS 51 (51)
T ss_dssp S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence 689999999999999999999999999999999999999999999999864
No 7
>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.71 E-value=1.2e-18 Score=163.35 Aligned_cols=66 Identities=44% Similarity=0.606 Sum_probs=61.9
Q ss_pred CCccceeEEeccCCCCceeccccccchhhhhhhhhhccccceeehhcCCCCCCCCCCCCcchHHHHHH
Q 018825 2 GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSSIEEVIA 69 (350)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTf~KRr~GL~KKA~ELSvLCdaeVaLIiFSp~GKl~ef~s~~ssme~VLe 69 (350)
||+||+|++|||+..|.|||+|||.||||||+|||||+|.+|-|+|.|.+|.+|.|+. +..+.||.
T Consensus 63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaT--pKLep~i~ 128 (338)
T KOG0015|consen 63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT--PKLEPMIT 128 (338)
T ss_pred ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEecc--cccccccc
Confidence 7999999999999999999999999999999999999999999999999999999987 66666653
No 8
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.39 E-value=1.1e-12 Score=107.22 Aligned_cols=85 Identities=20% Similarity=0.252 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhcccCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhccc
Q 018825 113 TIEDLTNQARLLQSQLSEMHRRLRYWTNPD-KINSVEHLGQMENSLRDSLNHLRMHKENLGKQELMSLECTTQFQNGICI 191 (350)
Q Consensus 113 ~vE~L~~ei~~Lq~qleelq~rlr~~~ged-~~LSveEL~qLE~qLe~sL~~IR~RK~qL~~~ql~~Lq~keq~~~~~~~ 191 (350)
.++.+..++..|+.+++.++..+|++.|++ +.||++||.+||++|+.+|.+||+||.+++.+++..|++|+..+.+.|.
T Consensus 13 ~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~ 92 (100)
T PF01486_consen 13 QHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENN 92 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999 8899999999999999999999999999999999999999988888777
Q ss_pred cccCCh
Q 018825 192 PFRMGS 197 (350)
Q Consensus 192 ~l~~~~ 197 (350)
.|+.+.
T Consensus 93 ~L~~~~ 98 (100)
T PF01486_consen 93 QLRQKI 98 (100)
T ss_pred HHHHHh
Confidence 666543
No 9
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.30 E-value=4.9e-13 Score=131.07 Aligned_cols=65 Identities=37% Similarity=0.528 Sum_probs=60.6
Q ss_pred CCCccceeEEeccCCCCceeccccccchhhhhhhhhhccccceeehhcCCCCCCCCCCCCcchHHHH
Q 018825 1 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSSIEEV 67 (350)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTf~KRr~GL~KKA~ELSvLCdaeVaLIiFSp~GKl~ef~s~~ssme~V 67 (350)
|||+||.|..|+|+.+|.|||+||+.||+|||+||+||.|.+|.|+|.|..|+++.|+. +..+.|
T Consensus 81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~t--p~~e~v 145 (412)
T COG5068 81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTT--PKLESV 145 (412)
T ss_pred cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecC--Cccccc
Confidence 79999999999999999999999999999999999999999999999999999999987 544444
No 10
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=87.86 E-value=5.4 Score=35.25 Aligned_cols=59 Identities=19% Similarity=0.247 Sum_probs=50.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHhHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018825 111 SQTIEDLTNQARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKE 169 (350)
Q Consensus 111 ~~~vE~L~~ei~~Lq~qleelq~rlr~~~ged~~LSveEL~qLE~qLe~sL~~IR~RK~ 169 (350)
....+++...+..|..++..++.++..+.+.....|.+|...+++......+..+.||.
T Consensus 108 ~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k~w~kRKr 166 (169)
T PF07106_consen 108 EPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRKEWKKRKR 166 (169)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888889999999999999988887755668999999999999999999999985
No 11
>PRK04098 sec-independent translocase; Provisional
Probab=82.08 E-value=3.7 Score=36.41 Aligned_cols=82 Identities=13% Similarity=0.280 Sum_probs=47.7
Q ss_pred ceeehhcCCCCCCCCCCCCcchHHHHHHHHhhhChHHHHhhhHHHHHHHHHHHHhhhhhhhhHhHhcCCcchHHHHHHHH
Q 018825 42 DIILLMFSPTGKPSLCNGKRSSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQA 121 (350)
Q Consensus 42 eVaLIiFSp~GKl~ef~s~~ssme~VLeRY~~~s~~er~k~~~~~le~L~k~~kKLd~e~~i~~~~~~~~~~vE~L~~ei 121 (350)
=||||||+| +||++.. ..+-+.|.+|++.....+.. ++.+. .+++++.+.
T Consensus 14 vVaLlvfGP-~KLP~~~---r~lGk~ir~~K~~~~~~k~~---------------l~~Ei-----------~~~elk~e~ 63 (158)
T PRK04098 14 VVAIIFLGP-DKLPQAM---VDIAKFFKAVKKTINDAKST---------------LDKEI-----------NIEEIKEEA 63 (158)
T ss_pred HHHHhhcCc-hHHHHHH---HHHHHHHHHHHHHHHHHHHH---------------HHHHH-----------hhHHHHHHH
Confidence 378999998 4776554 46666677766653321110 11111 234667777
Q ss_pred HHHHHHHHHHhHhhcccCCCCCCCCHHHHHHHHHHHHH
Q 018825 122 RLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRD 159 (350)
Q Consensus 122 ~~Lq~qleelq~rlr~~~ged~~LSveEL~qLE~qLe~ 159 (350)
.+.+..++.....+|- .+++++|..+-.-+..
T Consensus 64 ~k~k~~l~~~~~~l~~------~~~~eel~~~~~~~~~ 95 (158)
T PRK04098 64 LKYKKEFESAVESLKK------KLKFEELDDLKITAEN 95 (158)
T ss_pred HHHHHHHHHHHHHHHh------ccChHHHHHHhhhhhh
Confidence 7777777766665552 3677777766544444
No 12
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=75.70 E-value=52 Score=29.68 Aligned_cols=133 Identities=14% Similarity=0.142 Sum_probs=81.2
Q ss_pred hhhccccceeehhcCCCCCCCCCCCCcchHHHHHHHHhhhChHHHHhhhHH------HHHHHHHHHHhhhhhhhhHhHhc
Q 018825 35 LSILCDIDIILLMFSPTGKPSLCNGKRSSIEEVIAKFAQLTPQERAKRKLE------SLEALKKTFKKLDHDVNVQEFLG 108 (350)
Q Consensus 35 LSvLCdaeVaLIiFSp~GKl~ef~s~~ssme~VLeRY~~~s~~er~k~~~~------~le~L~k~~kKLd~e~~i~~~~~ 108 (350)
=..-|=|+.+-|+|-.-||--.|.-+. +-|...+..+..+-..+ ....|+++....+.+. .. -
T Consensus 44 k~Ld~La~~Gki~~K~YGKqKIY~a~Q-------DqF~~~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEi--k~--L 112 (201)
T KOG4603|consen 44 KTLDQLAQQGKIKEKMYGKQKIYFADQ-------DQFDMVSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEI--KE--L 112 (201)
T ss_pred HHHHHHHHcCchhHHhccceeeEeecH-------HhhcCCChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HH--H
Confidence 344477788888888888655543211 22333333332221111 1122333332222221 11 1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018825 109 TSSQTIEDLTNQARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGKQELMSL 179 (350)
Q Consensus 109 ~~~~~vE~L~~ei~~Lq~qleelq~rlr~~~ged~~LSveEL~qLE~qLe~sL~~IR~RK~qL~~~ql~~L 179 (350)
.++.++++++.++..|++.+.....|+..+.......+.++-.+.++.-+...+.-|.||. +..+-++.+
T Consensus 113 ~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~~~~~wrk~kr-mf~ei~d~~ 182 (201)
T KOG4603|consen 113 SSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQKYCKEWRKRKR-MFREIIDKL 182 (201)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 2345678899999999999988888887776655567889999999999999999999987 555555443
No 13
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=68.99 E-value=1.4 Score=26.47 Aligned_cols=15 Identities=33% Similarity=0.463 Sum_probs=11.7
Q ss_pred ceeehhcCCCCCCCC
Q 018825 42 DIILLMFSPTGKPSL 56 (350)
Q Consensus 42 eVaLIiFSp~GKl~e 56 (350)
|-.+.+|||.|+++.
T Consensus 2 D~~~t~FSp~Grl~Q 16 (23)
T PF10584_consen 2 DRSITTFSPDGRLFQ 16 (23)
T ss_dssp SSSTTSBBTTSSBHH
T ss_pred CCCceeECCCCeEEe
Confidence 345779999999864
No 14
>PHA03155 hypothetical protein; Provisional
Probab=65.81 E-value=44 Score=28.01 Aligned_cols=58 Identities=19% Similarity=0.296 Sum_probs=45.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHhHhhcccCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018825 111 SQTIEDLTNQARLLQSQLSEMHRRLRYWTNPD-KINSVEHLGQMENSLRDSLNHLRMHK 168 (350)
Q Consensus 111 ~~~vE~L~~ei~~Lq~qleelq~rlr~~~ged-~~LSveEL~qLE~qLe~sL~~IR~RK 168 (350)
...+|+|..++.+|+-++..|.++++.-.+++ ..|+-.+=+.+-.+.-..|...-++|
T Consensus 7 ~~tvEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~Lt~~A~~K 65 (115)
T PHA03155 7 CADVEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNKLTKKAEEK 65 (115)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999999999999997765555 67888887777777777666555554
No 15
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=60.81 E-value=24 Score=31.73 Aligned_cols=19 Identities=37% Similarity=0.494 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018825 148 EHLGQMENSLRDSLNHLRM 166 (350)
Q Consensus 148 eEL~qLE~qLe~sL~~IR~ 166 (350)
.||+.||.||++.|..||+
T Consensus 159 qElqELE~QL~DRl~~l~e 177 (179)
T PF14723_consen 159 QELQELEFQLEDRLLQLRE 177 (179)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 5889999999999988875
No 16
>PRK01919 tatB sec-independent translocase; Provisional
Probab=55.21 E-value=35 Score=30.56 Aligned_cols=28 Identities=7% Similarity=0.250 Sum_probs=16.2
Q ss_pred eeehhcCCCCCCCCCCCCcchHHHHHHHHhhh
Q 018825 43 IILLMFSPTGKPSLCNGKRSSIEEVIAKFAQL 74 (350)
Q Consensus 43 VaLIiFSp~GKl~ef~s~~ssme~VLeRY~~~ 74 (350)
||||||.| .||.+.. ..+-..+.+++++
T Consensus 15 VALiV~GP-ekLP~~a---RtlGk~i~k~Rr~ 42 (169)
T PRK01919 15 VALVVIGP-ERLPRVA---RTAGALFGRAQRY 42 (169)
T ss_pred HHHheeCc-hHhHHHH---HHHHHHHHHHHHH
Confidence 78899998 4554432 3445555554443
No 17
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=53.53 E-value=68 Score=27.12 Aligned_cols=56 Identities=23% Similarity=0.302 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhcccCC----CC-CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018825 113 TIEDLTNQARLLQSQLSEMHRRLRYWTN----PD-KINSVEHLGQMENSLRDSLNHLRMHK 168 (350)
Q Consensus 113 ~vE~L~~ei~~Lq~qleelq~rlr~~~g----ed-~~LSveEL~qLE~qLe~sL~~IR~RK 168 (350)
.+|+|..++.+|+-++..|.++++.-.| ++ ..|+..+=+.|-.+.-.+|...-++|
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe~~I~s~~~~Lss~A~~K 64 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKEAMITSAVSKLSSQASKK 64 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999988875 33 67898888877777777776665555
No 18
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.47 E-value=84 Score=30.23 Aligned_cols=24 Identities=4% Similarity=0.165 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018825 147 VEHLGQMENSLRDSLNHLRMHKEN 170 (350)
Q Consensus 147 veEL~qLE~qLe~sL~~IR~RK~q 170 (350)
=.++..|+..++..-.+|++|++-
T Consensus 79 ~~eik~l~~eI~~~~~~I~~r~~~ 102 (265)
T COG3883 79 KAEIKKLQKEIAELKENIVERQEL 102 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888888888643
No 19
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=48.04 E-value=89 Score=24.41 Aligned_cols=43 Identities=26% Similarity=0.423 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHhHhhcccCCCCCCCCHH----HHHHHHHHHHH
Q 018825 115 EDLTNQARLLQSQLSEMHRRLRYWTNPDKINSVE----HLGQMENSLRD 159 (350)
Q Consensus 115 E~L~~ei~~Lq~qleelq~rlr~~~ged~~LSve----EL~qLE~qLe~ 159 (350)
.++...+..++.++..+..-++.+.|.+ .|++ +|+.||.+++.
T Consensus 24 kd~~~~~~~lk~Klq~ar~~i~~lpgi~--~s~eeq~~~i~~Le~~i~~ 70 (83)
T PF07544_consen 24 KDLDTATGSLKHKLQKARAAIRELPGID--RSVEEQEEEIEELEEQIRK 70 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcc--CCHHHHHHHHHHHHHHHHH
Confidence 4555566666777766666666666654 3443 44444544444
No 20
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=48.03 E-value=1.8e+02 Score=32.05 Aligned_cols=12 Identities=8% Similarity=0.199 Sum_probs=5.9
Q ss_pred chHHHHHHHHhh
Q 018825 62 SSIEEVIAKFAQ 73 (350)
Q Consensus 62 ssme~VLeRY~~ 73 (350)
...-++|.++.+
T Consensus 535 ~E~l~lL~~a~~ 546 (717)
T PF10168_consen 535 QECLELLSQATK 546 (717)
T ss_pred HHHHHHHHHHHH
Confidence 444455555543
No 21
>PHA03162 hypothetical protein; Provisional
Probab=45.51 E-value=1.5e+02 Score=25.62 Aligned_cols=58 Identities=21% Similarity=0.216 Sum_probs=44.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhHhhcccCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018825 112 QTIEDLTNQARLLQSQLSEMHRRLRYWTNP-----DKINSVEHLGQMENSLRDSLNHLRMHKE 169 (350)
Q Consensus 112 ~~vE~L~~ei~~Lq~qleelq~rlr~~~ge-----d~~LSveEL~qLE~qLe~sL~~IR~RK~ 169 (350)
.++|+|..++.+|+-++..|.++++.-.++ |..|+-.+=+-|-.+.-..|...-++|-
T Consensus 13 ~tmEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~I~s~v~~Lts~A~kKI 75 (135)
T PHA03162 13 PTMEDLAAEIAKLQLENKALKKKIKEGTDDDPLPGDPILTPAAKEAMIGAATAALTRQAAKKI 75 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999766443 3458888777777777777766655553
No 22
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=43.79 E-value=3.2e+02 Score=29.92 Aligned_cols=108 Identities=14% Similarity=0.197 Sum_probs=50.9
Q ss_pred HHHHHHHhhhChHHHHhhhHHHHHHHHHHHHhhhhhhh-----hHhHhcCC-----cchHHHHHHHHHHHHHHHHHHhHh
Q 018825 65 EEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVN-----VQEFLGTS-----SQTIEDLTNQARLLQSQLSEMHRR 134 (350)
Q Consensus 65 e~VLeRY~~~s~~er~k~~~~~le~L~k~~kKLd~e~~-----i~~~~~~~-----~~~vE~L~~ei~~Lq~qleelq~r 134 (350)
..+.+.|....-..+........++|.+++..++.+.. +..|.... ....+.+-.++..++.++.+++.+
T Consensus 247 N~la~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~ 326 (726)
T PRK09841 247 NSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFR 326 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666655444444444455666666655544432 22333211 112233334455555555444433
Q ss_pred hcc---cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018825 135 LRY---WTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGK 173 (350)
Q Consensus 135 lr~---~~ged~~LSveEL~qLE~qLe~sL~~IR~RK~qL~~ 173 (350)
... ..++.. =.+..|+.-...|+..+..++.+-..+-.
T Consensus 327 ~~~l~~~~~~~h-P~v~~l~~~~~~L~~~~~~l~~~~~~~p~ 367 (726)
T PRK09841 327 EAEISQLYKKDH-PTYRALLEKRQTLEQERKRLNKRVSAMPS 367 (726)
T ss_pred HHHHHHHhcccC-chHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 221 123332 23556665556666666666665544433
No 23
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=43.70 E-value=1e+02 Score=29.39 Aligned_cols=26 Identities=15% Similarity=0.344 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018825 146 SVEHLGQMENSLRDSLNHLRMHKENL 171 (350)
Q Consensus 146 SveEL~qLE~qLe~sL~~IR~RK~qL 171 (350)
+.+|-..|-.+|...|..++.++.+.
T Consensus 45 s~dEa~~L~~~L~~kl~eLqkk~~Ea 70 (277)
T PF15030_consen 45 SRDEATRLQDELQGKLEELQKKQHEA 70 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 45666667777777777666666553
No 24
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=42.45 E-value=1.1e+02 Score=27.12 Aligned_cols=58 Identities=14% Similarity=0.111 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018825 115 EDLTNQARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLG 172 (350)
Q Consensus 115 E~L~~ei~~Lq~qleelq~rlr~~~ged~~LSveEL~qLE~qLe~sL~~IR~RK~qL~ 172 (350)
+.++-....++.++..++.+++......+.|.+-+..+|.-.-.....+|.+|-..|.
T Consensus 9 ~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~ 66 (177)
T PF13870_consen 9 SKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELL 66 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555556666666665554444567777777777777777777766654443
No 25
>PRK04654 sec-independent translocase; Provisional
Probab=41.11 E-value=46 Score=30.93 Aligned_cols=27 Identities=7% Similarity=0.114 Sum_probs=16.5
Q ss_pred eeehhcCCCCCCCCCCCCcchHHHHHHHHhh
Q 018825 43 IILLMFSPTGKPSLCNGKRSSIEEVIAKFAQ 73 (350)
Q Consensus 43 VaLIiFSp~GKl~ef~s~~ssme~VLeRY~~ 73 (350)
|+||||+| .||.+.. ..+-+.|.++++
T Consensus 15 VALlV~GP-erLPe~a---RtlGk~irk~R~ 41 (214)
T PRK04654 15 VALVVLGP-ERLPKAA---RFAGLWVRRARM 41 (214)
T ss_pred HHHHhcCc-hHHHHHH---HHHHHHHHHHHH
Confidence 68899998 4554432 345555555554
No 26
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=40.93 E-value=2.3e+02 Score=24.22 Aligned_cols=51 Identities=33% Similarity=0.460 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018825 114 IEDLTNQARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLG 172 (350)
Q Consensus 114 vE~L~~ei~~Lq~qleelq~rlr~~~ged~~LSveEL~qLE~qLe~sL~~IR~RK~qL~ 172 (350)
++.+...+.+|+.+++++++.+. ..-.....++..+......++.-|+++-
T Consensus 68 ~~~l~~~~~rL~~~~~~~ere~~--------~~~~~~~~l~~~~~~~~~~~k~~kee~~ 118 (151)
T PF11559_consen 68 IERLQNDVERLKEQLEELERELA--------SAEEKERQLQKQLKSLEAKLKQEKEELQ 118 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666667777766665542 2234455555555555555555555443
No 27
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=39.99 E-value=1.4e+02 Score=24.70 Aligned_cols=51 Identities=14% Similarity=0.176 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHhHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018825 115 EDLTNQARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLG 172 (350)
Q Consensus 115 E~L~~ei~~Lq~qleelq~rlr~~~ged~~LSveEL~qLE~qLe~sL~~IR~RK~qL~ 172 (350)
+.+..+++.|-..++++-+.- ...+-+|+..|-..++..|+++|.|-....
T Consensus 11 ~~l~~el~~L~d~lEevL~ss-------g~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~ 61 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKSS-------GSLAGDEAEELRSKAESALKEARDRLGDTG 61 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-------ccchhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456666666666666553321 346789999999999999999998865553
No 28
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=39.07 E-value=4.2e+02 Score=30.40 Aligned_cols=28 Identities=21% Similarity=0.506 Sum_probs=15.2
Q ss_pred hcCCCCCCCCCCCCcchHHHHHHHHhhhCh
Q 018825 47 MFSPTGKPSLCNGKRSSIEEVIAKFAQLTP 76 (350)
Q Consensus 47 iFSp~GKl~ef~s~~ssme~VLeRY~~~s~ 76 (350)
||.|.|-+.- |+.+.-.++|..++.+..
T Consensus 654 V~dP~GtlTG--Gs~~~~a~~L~~l~~l~~ 681 (1174)
T KOG0933|consen 654 VYDPSGTLTG--GSRSKGADLLRQLQKLKQ 681 (1174)
T ss_pred eeCCCCcccC--CCCCCcccHHHHHHHHHH
Confidence 6778877653 222333336666666543
No 29
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=37.59 E-value=2.4e+02 Score=32.88 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=37.8
Q ss_pred chHHHHHHHHHHHHHHHHHHhHhhcccCCCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018825 112 QTIEDLTNQARLLQSQLSEMHRRLRYWTNPD------KINSVEHLGQMENSLRDSLNHLRMHKENLG 172 (350)
Q Consensus 112 ~~vE~L~~ei~~Lq~qleelq~rlr~~~ged------~~LSveEL~qLE~qLe~sL~~IR~RK~qL~ 172 (350)
..++.+......|++++.++..+|.....-. .+++-++|..|++..+..++-+++-++++.
T Consensus 1225 ~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~ 1291 (1758)
T KOG0994|consen 1225 EDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLE 1291 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666666555553322111 134568999999988887777777776654
No 30
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=37.47 E-value=4.8e+02 Score=26.94 Aligned_cols=29 Identities=17% Similarity=0.395 Sum_probs=23.4
Q ss_pred ceeehhcCCCCCCCCCCCCcchHHHHHHHHhhh
Q 018825 42 DIILLMFSPTGKPSLCNGKRSSIEEVIAKFAQL 74 (350)
Q Consensus 42 eVaLIiFSp~GKl~ef~s~~ssme~VLeRY~~~ 74 (350)
-+-+++|+++|++..|. ++.+||..|-..
T Consensus 298 ~~Nm~~~d~~g~~~~~~----~~~~Il~~f~~~ 326 (439)
T PHA02592 298 SQNITVINENGKLKVYE----NAEDLIRDFVEI 326 (439)
T ss_pred eeeEEEEecCCeeeecC----CHHHHHHHHHHH
Confidence 36678999999987774 589999999665
No 31
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=36.08 E-value=74 Score=24.42 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=18.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Q 018825 145 NSVEHLGQMENSLRDSLNHLRMHK 168 (350)
Q Consensus 145 LSveEL~qLE~qLe~sL~~IR~RK 168 (350)
+|++.|.+||..+..++..|..-+
T Consensus 1 M~~E~l~~LE~ki~~aveti~~Lq 24 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETIALLQ 24 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999886543
No 32
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=35.73 E-value=3.5e+02 Score=29.12 Aligned_cols=61 Identities=25% Similarity=0.298 Sum_probs=34.2
Q ss_pred cccccccccccccccccccCC--------------CC-CCC-----CCccccCcccc---cccCCCCcccccCCccCCC-
Q 018825 262 LSELSGTQSLRLQLGGQCSYI--------------PY-NVS-----LLNDKFQPVSE---MNIQENPVDYHVSGSLEVP- 317 (350)
Q Consensus 262 ~~~~~~~~~~~~~~~~q~~~~--------------~~-~~~-----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~- 317 (350)
+-+--..||+-++|.|...-| || ... |+|- -+|.-. +..+..-...+|.+.|+.-
T Consensus 230 ~ve~pd~ACiyi~lvge~q~P~~l~p~eleklyslp~w~~dg~Nhvl~Nl-~r~s~~~n~lyn~~t~raivvQssf~~~q 308 (907)
T KOG2264|consen 230 LVETPDKACIYIHLVGEIQSPVVLTPAELEKLYSLPHWRTDGFNHVLFNL-GRPSDTQNLLYNFQTGRAIVVQSSFYTVQ 308 (907)
T ss_pred EeeCCCccEEEEEEeccccCCCcCChHhhhhhhcCccccCCCcceEEEEc-cCccccccceeEeccCceEEEeecceeee
Confidence 444445689998887755322 32 222 3333 112212 2224455678888888755
Q ss_pred -CCCCCC
Q 018825 318 -RPGFDT 323 (350)
Q Consensus 318 -~~~~~~ 323 (350)
|||||-
T Consensus 309 ~RpgfDl 315 (907)
T KOG2264|consen 309 IRPGFDL 315 (907)
T ss_pred eccCCCc
Confidence 899994
No 33
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=35.61 E-value=1.9e+02 Score=29.73 Aligned_cols=41 Identities=17% Similarity=0.088 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhhhhhh
Q 018825 143 KINSVEHLGQMENSLRDSLNHLRMHKENLGK-------QELMSLECTT 183 (350)
Q Consensus 143 ~~LSveEL~qLE~qLe~sL~~IR~RK~qL~~-------~ql~~Lq~ke 183 (350)
+..-.+-++..|+-|....++.|+.=++.+. +...+|+++|
T Consensus 65 ~p~q~~~~~lnEkvLkdkrKK~rEtfer~~rlye~~~p~~~~~L~r~e 112 (487)
T KOG4672|consen 65 NPFQIDVLRLNEKVLKDKRKKRRETFERGKRLYEATEPVMFSHLQRRE 112 (487)
T ss_pred CccccchhhhHHHHHHHHHHHHHHHHHHHHHhhcccChHHHHHHHHHh
Confidence 3445567888999999988888886554442 2345566653
No 34
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=33.32 E-value=1.2e+02 Score=24.73 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhcccCCCC
Q 018825 113 TIEDLTNQARLLQSQLSEMHRRLRYWTNPD 142 (350)
Q Consensus 113 ~vE~L~~ei~~Lq~qleelq~rlr~~~ged 142 (350)
+++.+...+.....++..++.++.+++.-+
T Consensus 36 ~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~ 65 (106)
T PF10805_consen 36 DIEKLEERLDEHDRRLQALETKLEHLPTRD 65 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 344555566666777777777777665543
No 35
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=32.54 E-value=2.3e+02 Score=30.48 Aligned_cols=17 Identities=18% Similarity=0.348 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018825 149 HLGQMENSLRDSLNHLR 165 (350)
Q Consensus 149 EL~qLE~qLe~sL~~IR 165 (350)
++..||..|+..-..++
T Consensus 451 eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 451 EIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555444443
No 36
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=32.42 E-value=2.1e+02 Score=25.06 Aligned_cols=29 Identities=21% Similarity=0.237 Sum_probs=20.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018825 144 INSVEHLGQMENSLRDSLNHLRMHKENLG 172 (350)
Q Consensus 144 ~LSveEL~qLE~qLe~sL~~IR~RK~qL~ 172 (350)
.++.+||...-.+|+.-+..+.+|-..|-
T Consensus 108 ~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 108 EPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888777777777777766655554
No 37
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=31.92 E-value=2.4e+02 Score=21.86 Aligned_cols=53 Identities=9% Similarity=0.214 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018825 116 DLTNQARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENL 171 (350)
Q Consensus 116 ~L~~ei~~Lq~qleelq~rlr~~~ged~~LSveEL~qLE~qLe~sL~~IR~RK~qL 171 (350)
.|++++.-++.+..+++..++.. +...+...=..|+..|+..++++-.+-.|+
T Consensus 21 ~LqDE~~hm~~e~~~L~~~~~~~---d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI 73 (79)
T PF06657_consen 21 ALQDEFGHMKMEHQELQDEYKQM---DPSLGRRKRRDLEQELEELVKRMEAKADQI 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc---ccccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555554444332 234677888889999999999887765443
No 38
>PRK11637 AmiB activator; Provisional
Probab=31.02 E-value=2.3e+02 Score=28.78 Aligned_cols=10 Identities=30% Similarity=0.408 Sum_probs=4.1
Q ss_pred CCCCCCCCCC
Q 018825 229 VECSGSSSFG 238 (350)
Q Consensus 229 ~~c~~sl~~g 238 (350)
+.+.-+..||
T Consensus 311 v~g~i~~~fg 320 (428)
T PRK11637 311 VRGPTLHRFG 320 (428)
T ss_pred CCCCccCCCC
Confidence 3333334444
No 39
>PRK11519 tyrosine kinase; Provisional
Probab=29.62 E-value=7e+02 Score=27.23 Aligned_cols=37 Identities=8% Similarity=0.248 Sum_probs=20.4
Q ss_pred HHHHHHHHhhhChHHHHhhhHHHHHHHHHHHHhhhhh
Q 018825 64 IEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHD 100 (350)
Q Consensus 64 me~VLeRY~~~s~~er~k~~~~~le~L~k~~kKLd~e 100 (350)
+..+.+.|.+..-..+........++|.+++.+++.+
T Consensus 246 aN~l~~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~ 282 (719)
T PRK11519 246 LNSITRNYLEQNIERKSEEASKSLAFLAQQLPEVRSR 282 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667766655444433344556666666555443
No 40
>PRK01770 sec-independent translocase; Provisional
Probab=29.38 E-value=95 Score=27.94 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=21.4
Q ss_pred hhhhccccceeehhcCCCCCCCCCCCCcchHHHHHHHHhhhC
Q 018825 34 ELSILCDIDIILLMFSPTGKPSLCNGKRSSIEEVIAKFAQLT 75 (350)
Q Consensus 34 ELSvLCdaeVaLIiFSp~GKl~ef~s~~ssme~VLeRY~~~s 75 (350)
||-|++ =||||||+| .||.... ..+-..|.+++++.
T Consensus 8 ELllI~--vVaLlV~GP-erLP~~~---r~lg~~i~~~R~~~ 43 (171)
T PRK01770 8 ELLLVF--VIGLVVLGP-QRLPVAV---KTVAGWIRALRSLA 43 (171)
T ss_pred HHHHHH--HHHHHhcCc-hHHHHHH---HHHHHHHHHHHHHH
Confidence 444443 278899998 4554442 35666666666653
No 41
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=27.30 E-value=1.3e+02 Score=27.14 Aligned_cols=59 Identities=12% Similarity=0.191 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhcccCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018825 113 TIEDLTNQARLLQSQLSEMHRRLRYWTNPD----KINSVEHLGQMENSLRDSLNHLRMHKENL 171 (350)
Q Consensus 113 ~vE~L~~ei~~Lq~qleelq~rlr~~~ged----~~LSveEL~qLE~qLe~sL~~IR~RK~qL 171 (350)
++..|..++..|.+++.+++...+....+. ..|+++|++.--+.|..-...-|+|-..+
T Consensus 80 el~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~ 142 (201)
T KOG4603|consen 80 ELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNI 142 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455677777777777777776654433 45889999888888877666666665443
No 42
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=26.56 E-value=5.4e+02 Score=24.13 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018825 113 TIEDLTNQARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHK 168 (350)
Q Consensus 113 ~vE~L~~ei~~Lq~qleelq~rlr~~~ged~~LSveEL~qLE~qLe~sL~~IR~RK 168 (350)
..++|...+..+...+.++-.....+.+.+..++-.+|...=...+.-|..||.|-
T Consensus 88 ~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~ 143 (264)
T PF06008_consen 88 RAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRD 143 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 45667777888888888877777666665567889999999999999999999983
No 43
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=26.37 E-value=5.6e+02 Score=24.27 Aligned_cols=22 Identities=5% Similarity=0.105 Sum_probs=11.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 018825 145 NSVEHLGQMENSLRDSLNHLRM 166 (350)
Q Consensus 145 LSveEL~qLE~qLe~sL~~IR~ 166 (350)
.+.+++..|...+..+-.++++
T Consensus 86 ~~~~e~~aL~~E~~~ak~r~~~ 107 (239)
T COG1579 86 KDERELRALNIEIQIAKERINS 107 (239)
T ss_pred ccHHHHHHHHHHHHHHHHHHHH
Confidence 4556666665555444444433
No 44
>PF01502 PRA-CH: Phosphoribosyl-AMP cyclohydrolase; InterPro: IPR002496 Phosphoribosyl-AMP cyclohydrolase 3.5.4.19 from EC catalyses the third step in the histidine biosynthetic pathway: 5-phosphoribosyl-AMP + H2O = 5-(5-phospho-D-ribosylaminoformimino)-1-(5-phospho-ribosyl) imidazole-4-carboxamide It requires Zn2+ ions for activity [].; GO: 0004635 phosphoribosyl-AMP cyclohydrolase activity, 0000105 histidine biosynthetic process; PDB: 1ZPS_B.
Probab=26.04 E-value=12 Score=29.16 Aligned_cols=38 Identities=26% Similarity=0.564 Sum_probs=28.7
Q ss_pred CCceeccccccchhhhh---------hhhhhccccceeehhcCCCCC
Q 018825 16 GRQATYAKRKHGIMKKA---------NELSILCDIDIILLMFSPTGK 53 (350)
Q Consensus 16 ~RqvTf~KRr~GL~KKA---------~ELSvLCdaeVaLIiFSp~GK 53 (350)
.+-+-||+-|++|..|. .|+.+-||.|.-|+..-|.|.
T Consensus 17 g~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~ll~~V~~~G~ 63 (75)
T PF01502_consen 17 GRATYYSRSRNRLWRKGETSGNTQKVVEIRLDCDGDALLFKVEQVGP 63 (75)
T ss_dssp SB-EEEETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS-
T ss_pred CcEEEEEccCCcEeeEECCCCCEEEEEEEEecCCCCeEEEEEEeCCC
Confidence 34455688888887776 489999999999999888886
No 45
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=25.78 E-value=23 Score=29.55 Aligned_cols=40 Identities=28% Similarity=0.583 Sum_probs=29.9
Q ss_pred CCceeccccccchhhhh---------hhhhhccccceeehhcCCCCCCC
Q 018825 16 GRQATYAKRKHGIMKKA---------NELSILCDIDIILLMFSPTGKPS 55 (350)
Q Consensus 16 ~RqvTf~KRr~GL~KKA---------~ELSvLCdaeVaLIiFSp~GKl~ 55 (350)
.+-.-||+=|+-|.+|- .|+.+-||.|+-||+..+.|.+.
T Consensus 49 g~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~Dall~~V~q~gg~a 97 (111)
T COG0139 49 GEAHYYSRSRQELWTKGETSGHTQKVVEIRLDCDGDALLLLVEQIGGPA 97 (111)
T ss_pred CeEEEEEcchhhheccccccCceEEEEEEEcCCCCCEEEEEEEeCCCCc
Confidence 34445577777666664 59999999999999999877543
No 46
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=25.40 E-value=5.9e+02 Score=26.86 Aligned_cols=15 Identities=13% Similarity=0.271 Sum_probs=11.1
Q ss_pred cchHHHHHHHHhhhC
Q 018825 61 RSSIEEVIAKFAQLT 75 (350)
Q Consensus 61 ~ssme~VLeRY~~~s 75 (350)
+..-.++|++|....
T Consensus 143 ~~~~~~lLD~~~~~~ 157 (563)
T TIGR00634 143 PDEQRQLLDTFAGAN 157 (563)
T ss_pred HHHHHHHHHHhcCch
Confidence 366778899998753
No 47
>PRK11637 AmiB activator; Provisional
Probab=25.03 E-value=3e+02 Score=27.85 Aligned_cols=20 Identities=5% Similarity=0.179 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018825 149 HLGQMENSLRDSLNHLRMHK 168 (350)
Q Consensus 149 EL~qLE~qLe~sL~~IR~RK 168 (350)
++..++..|...-..|..++
T Consensus 104 ei~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 104 QIDELNASIAKLEQQQAAQE 123 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 48
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=24.92 E-value=5.6e+02 Score=27.55 Aligned_cols=7 Identities=14% Similarity=0.344 Sum_probs=3.8
Q ss_pred CCCCccc
Q 018825 255 SGQDSSL 261 (350)
Q Consensus 255 ~~~~~~~ 261 (350)
||||...
T Consensus 553 S~Ge~~~ 559 (650)
T TIGR03185 553 SAGERQI 559 (650)
T ss_pred CHHHHHH
Confidence 5666443
No 49
>PF09158 MotCF: Bacteriophage T4 MotA, C-terminal; InterPro: IPR015241 Transcription factor MotA is required for the activation of middle promoters in Bacteriophage T4, in addition to phage T4 co-activator AsiA, and sigma-70-containing Escherichia coli RNA polymerase. Phage T4 middle promoters have the sigma70 -10 DNA element, but not the -35 element; instead, they have a MotA box at -30 to which the transcription factor MotA binds []. MotA and AsiA interact with the C-terminal of sigma70 (region 4), which normally binds the -35 element and the beta-flap, thereby diverting sigma70 away from host promoters that require -35 element-binding to phage T4 middle promoters. Transcription factor MotA has two domains: an N-terminal domain required for binding to sigma70, and a C-terminal domain required for binding to the -30 MotA box element in the phage T4 middle promoter. This entry represents the C-terminal domain of MotA factors, which adopts a compact alpha/beta structure comprising three alpha-helices and six beta-strands in the order: alpha1-beta1-beta2-beta3-beta4-alpha2-beta5-beta6-alpha3. In this architecture, the domain's hydrophobic core is at the sheet-helix interface, and the second surface of the beta-sheet is completely exposed. It contains a DNA-binding motif, with a consensus sequence containing nine base pairs (5'-TTTGCTTTA-3'), that appears to bind to various mot boxes, allowing access to the minor groove towards the 5'-end of this sequence and the major groove towards the 3'-end [].; PDB: 1KAF_B.
Probab=24.55 E-value=29 Score=28.55 Aligned_cols=54 Identities=26% Similarity=0.434 Sum_probs=33.1
Q ss_pred cceeEEe-ccCCCCceeccccccchhhhhhhhhhccccceeehhcCCCCCCCCCCCCcchHHHHHHHHhhhC
Q 018825 5 KLKIKKL-ENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSSIEEVIAKFAQLT 75 (350)
Q Consensus 5 Ki~ik~I-en~~~RqvTf~KRr~GL~KKA~ELSvLCdaeVaLIiFSp~GKl~ef~s~~ssme~VLeRY~~~s 75 (350)
+|++|.+ +|.++=.|+|.||-.|+-+ - || ..+|..=.|.- .-.+++++.|..+-
T Consensus 19 ~ie~K~~~~~RSN~~i~f~KRt~Girq--f--------Ei-----~n~G~~RI~gY--k~se~~~~~f~slG 73 (103)
T PF09158_consen 19 KIEVKEIVIDRSNYEIRFKKRTKGIRQ--F--------EI-----RNKGEFRIFGY--KMSEEIIKKFTSLG 73 (103)
T ss_dssp T--EEEEEEETTEEEEEEEEEETTEEE--E--------EE-----ETTSEEEEEEE--S--HHHHHHHHHTT
T ss_pred ceeeeeeEeeccceEEeeecccCceeE--E--------EE-----ecCCcEEEEEE--cCCHHHHHHHHhcC
Confidence 5777776 7888899999999999843 1 11 24565434432 44567777776653
No 50
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=24.07 E-value=1.9e+02 Score=21.36 Aligned_cols=30 Identities=23% Similarity=0.198 Sum_probs=21.8
Q ss_pred cCCCC-CCCCHHHHHHHHHHHHHHHHHHHHH
Q 018825 138 WTNPD-KINSVEHLGQMENSLRDSLNHLRMH 167 (350)
Q Consensus 138 ~~ged-~~LSveEL~qLE~qLe~sL~~IR~R 167 (350)
..|.| +.+|++||..--..|+.-+.+++.-
T Consensus 13 ~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~ 43 (59)
T PF06698_consen 13 EIGEDLSLLSVEELEERIALLEAEIARLEAA 43 (59)
T ss_pred ccCCCchhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 34555 6789999998777777777776653
No 51
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=23.51 E-value=5.9e+02 Score=29.60 Aligned_cols=44 Identities=20% Similarity=0.447 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 018825 114 IEDLTNQARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHL 164 (350)
Q Consensus 114 vE~L~~ei~~Lq~qleelq~rlr~~~ged~~LSveEL~qLE~qLe~sL~~I 164 (350)
+..|++|++.|+.+ +.|+..|-+. +.+-+++.||++|...-..+
T Consensus 1133 lnnlqqElklLRnE------K~Rmh~~~dk-VDFSDIEkLE~qLq~~~~kL 1176 (1439)
T PF12252_consen 1133 LNNLQQELKLLRNE------KIRMHSGTDK-VDFSDIEKLEKQLQVIHTKL 1176 (1439)
T ss_pred HHHHHHHHHHHHhH------HHhhccCCCc-ccHHHHHHHHHHHHHhhhhh
Confidence 34555555555543 3455556554 67888888888887644433
No 52
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=23.32 E-value=3.2e+02 Score=24.38 Aligned_cols=45 Identities=13% Similarity=0.364 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018825 116 DLTNQARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKE 169 (350)
Q Consensus 116 ~L~~ei~~Lq~qleelq~rlr~~~ged~~LSveEL~qLE~qLe~sL~~IR~RK~ 169 (350)
+.++++.+|+.+...|... ...-+++..+-+.++..|+.||+--.
T Consensus 115 e~snki~kLe~~~k~L~d~---------Iv~~~~i~e~IKd~de~L~~I~d~iK 159 (163)
T PF03233_consen 115 EISNKIRKLETEVKKLKDN---------IVTEKLIEELIKDFDERLKEIRDKIK 159 (163)
T ss_pred HHHHHHHHHHHHHHhHhhh---------ccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555444332 35678899999999999999987543
No 53
>PRK10884 SH3 domain-containing protein; Provisional
Probab=22.85 E-value=5.2e+02 Score=23.79 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 018825 117 LTNQARLLQSQLSE 130 (350)
Q Consensus 117 L~~ei~~Lq~qlee 130 (350)
++.|+..++.++.+
T Consensus 98 le~el~~l~~~l~~ 111 (206)
T PRK10884 98 LENQVKTLTDKLNN 111 (206)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444333
No 54
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=22.60 E-value=1.7e+02 Score=28.55 Aligned_cols=45 Identities=20% Similarity=0.387 Sum_probs=30.8
Q ss_pred eeEEeccCCCCceeccccccchhhhhhhhhhccccceeehhcCCCCCCCCCCCCcchHHHHHHHHhh
Q 018825 7 KIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSSIEEVIAKFAQ 73 (350)
Q Consensus 7 ~ik~Ien~~~RqvTf~KRr~GL~KKA~ELSvLCdaeVaLIiFSp~GKl~ef~s~~ssme~VLeRY~~ 73 (350)
.|..|.|.+.|..+ +-| .||..|.+ +.| .|-. +|.|++|+++|.+
T Consensus 25 n~~li~n~tqr~t~-~sR------------~L~Ecel~---~~p-----~Y~n-DpEmK~iid~~n~ 69 (295)
T TIGR01478 25 NVSYIQNNTQMTST-KSR------------LLAEIQRP---KNP-----HYHN-DPELKEIIDKLNE 69 (295)
T ss_pred ceecccCccccccc-cce------------ehhhhccc---cCC-----CCCC-cHHHHHHHHHHhH
Confidence 35677888777665 222 47888775 443 4554 6999999999865
No 55
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=21.53 E-value=4.2e+02 Score=21.07 Aligned_cols=47 Identities=23% Similarity=0.299 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 018825 114 IEDLTNQARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLR 165 (350)
Q Consensus 114 vE~L~~ei~~Lq~qleelq~rlr~~~ged~~LSveEL~qLE~qLe~sL~~IR 165 (350)
|+.+...+...+.+++.+..+++- ..+|.+.-..||+.+..-.+++.
T Consensus 7 Id~lEekl~~cr~~le~ve~rL~~-----~eLs~e~R~~lE~E~~~l~~~l~ 53 (85)
T PF15188_consen 7 IDGLEEKLAQCRRRLEAVESRLRR-----RELSPEARRSLEKELNELKEKLE 53 (85)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHcc-----cCCChHHHHHHHHHHHHHHHHhh
Confidence 455666677788888888888852 24788888888877666554443
No 56
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=21.43 E-value=3e+02 Score=28.36 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 018825 149 HLGQMENSLRDSLNHL 164 (350)
Q Consensus 149 EL~qLE~qLe~sL~~I 164 (350)
+|..||-+.+-++.+.
T Consensus 247 el~Sle~q~~~s~~ql 262 (447)
T KOG2751|consen 247 ELDSLEAQIEYSQAQL 262 (447)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3444444444443333
No 57
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=21.22 E-value=9.4e+02 Score=24.99 Aligned_cols=28 Identities=7% Similarity=-0.056 Sum_probs=20.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018825 144 INSVEHLGQMENSLRDSLNHLRMHKENL 171 (350)
Q Consensus 144 ~LSveEL~qLE~qLe~sL~~IR~RK~qL 171 (350)
..++.++..+-..+...+..++.++..+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (525)
T TIGR02231 123 EPDLKEWFQAFDFNGSEIERLLTEDREA 150 (525)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888887777777777766554
No 58
>PF09941 DUF2173: Uncharacterized conserved protein (DUF2173); InterPro: IPR018685 This family of various hypothetical prokaryotic proteins has no known function.
Probab=21.12 E-value=65 Score=26.79 Aligned_cols=41 Identities=24% Similarity=0.243 Sum_probs=27.0
Q ss_pred hhhhhhccccceeehhcCCCCCCCCCCCCcchHHHHHHHHhhhC
Q 018825 32 ANELSILCDIDIILLMFSPTGKPSLCNGKRSSIEEVIAKFAQLT 75 (350)
Q Consensus 32 A~ELSvLCdaeVaLIiFSp~GKl~ef~s~~ssme~VLeRY~~~s 75 (350)
-.+|..|-|| +|...||++|++.+|-+ .=-++.+++.....
T Consensus 3 l~~Lm~lpGv-~AAg~Fs~~G~l~e~~G--~l~~~~a~m~A~mc 43 (108)
T PF09941_consen 3 LDKLMKLPGV-VAAGEFSDDGKLVEYKG--ELDEEMAEMLAKMC 43 (108)
T ss_pred HHHhhcCCCe-EEEEEECCCCeEEeeec--CCCHHHHHHHHHHH
Confidence 4567777777 45588999999999877 22333444444443
No 59
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=20.20 E-value=1.1e+03 Score=26.24 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhhhhhhh
Q 018825 166 MHKENLGKQELMSLECT 182 (350)
Q Consensus 166 ~RK~qL~~~ql~~Lq~k 182 (350)
.||++++...|.+|++.
T Consensus 604 arrEd~~R~Ei~~LqrR 620 (961)
T KOG4673|consen 604 ARREDMFRGEIEDLQRR 620 (961)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47888999999999886
No 60
>PRK00182 tatB sec-independent translocase; Provisional
Probab=20.15 E-value=85 Score=27.93 Aligned_cols=35 Identities=11% Similarity=0.161 Sum_probs=21.4
Q ss_pred hhhhccccceeehhcCCCCCCCCCCCCcchHHHHHHHHhhh
Q 018825 34 ELSILCDIDIILLMFSPTGKPSLCNGKRSSIEEVIAKFAQL 74 (350)
Q Consensus 34 ELSvLCdaeVaLIiFSp~GKl~ef~s~~ssme~VLeRY~~~ 74 (350)
||-|+. =||||||.| +||.+.. ..+-+.|.+|++.
T Consensus 9 EllvIl--vIaLlVfGP-erLP~~~---r~lg~~ir~~R~~ 43 (160)
T PRK00182 9 EILLLL--IVGLIVIGP-ERLPRLI---EDVRAALLAARTA 43 (160)
T ss_pred HHHHHH--HHHHHhcCc-hHHHHHH---HHHHHHHHHHHHH
Confidence 454443 368899998 5665553 3555666665554
No 61
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=20.07 E-value=1.9e+02 Score=20.63 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=14.7
Q ss_pred CCCHHHHHH----HHHHHHHHHHHHHHH
Q 018825 144 INSVEHLGQ----MENSLRDSLNHLRMH 167 (350)
Q Consensus 144 ~LSveEL~q----LE~qLe~sL~~IR~R 167 (350)
.+|++||++ |...+|.-|..+|.|
T Consensus 7 ~ls~~eL~~rl~~LD~~ME~Eieelr~R 34 (49)
T PF11629_consen 7 FLSYEELQQRLASLDPEMEQEIEELRQR 34 (49)
T ss_dssp GS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 356777665 556666666677765
Done!