Query 018825
Match_columns 350
No_of_seqs 292 out of 1441
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 06:38:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018825.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018825hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p57_A Myocyte-specific enhanc 100.0 1.2E-35 4.1E-40 235.1 -2.2 88 2-91 1-88 (90)
2 1egw_A MADS box transcription 100.0 6.7E-35 2.3E-39 225.3 -1.8 73 2-76 1-73 (77)
3 1mnm_A Protein (MCM1 transcrip 100.0 4.8E-33 1.7E-37 223.8 -2.9 75 1-77 16-90 (100)
4 1hbx_A SRF, serum response fac 100.0 1.3E-32 4.4E-37 218.6 -5.0 71 1-73 10-80 (92)
5 1k6o_B SRF, serum response fac 100.0 4E-32 1.4E-36 219.8 -4.7 70 1-72 9-78 (103)
6 2oa5_A Hypothetical protein BQ 61.1 36 0.0012 27.2 7.6 58 111-168 7-67 (110)
7 3u1c_A Tropomyosin alpha-1 cha 44.5 1.1E+02 0.0037 23.7 9.6 40 148-187 58-99 (101)
8 2w6a_A ARF GTPase-activating p 42.6 72 0.0025 22.7 5.9 54 141-194 6-61 (63)
9 1m1j_B Fibrinogen beta chain; 37.8 2.1E+02 0.0071 28.4 10.7 44 26-74 54-97 (464)
10 3na7_A HP0958; flagellar bioge 33.7 1.4E+02 0.0048 26.7 8.2 14 229-242 223-236 (256)
11 1m1j_C Fibrinogen gamma chain; 33.0 2.8E+02 0.0097 26.9 10.7 22 53-74 14-35 (409)
12 3twe_A Alpha4H; unknown functi 31.5 59 0.002 18.8 3.3 13 115-127 11-23 (27)
13 3ghg_A Fibrinogen alpha chain; 31.2 2.9E+02 0.01 27.9 10.4 13 61-73 48-60 (562)
14 3oja_B Anopheles plasmodium-re 29.3 3.3E+02 0.011 26.7 10.9 43 148-190 537-582 (597)
15 2l5g_A GPS2 protein, G protein 27.8 76 0.0026 20.4 3.6 19 155-173 18-36 (38)
16 3nrf_A APAG protein; structura 23.6 8.9 0.0003 30.5 -1.6 40 11-55 21-60 (106)
17 2dfs_A Myosin-5A; myosin-V, in 23.5 4.5E+02 0.015 28.8 11.2 8 173-180 1036-1043(1080)
18 1gk4_A Vimentin; intermediate 23.3 2.3E+02 0.0078 21.0 7.1 50 115-172 4-53 (84)
19 3tnu_A Keratin, type I cytoske 23.1 2.9E+02 0.0099 22.1 8.3 26 147-172 79-104 (131)
20 3u59_A Tropomyosin beta chain; 21.7 2.7E+02 0.0093 21.2 9.6 39 149-187 59-99 (101)
No 1
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=1.2e-35 Score=235.11 Aligned_cols=88 Identities=34% Similarity=0.641 Sum_probs=79.3
Q ss_pred CCccceeEEeccCCCCceeccccccchhhhhhhhhhccccceeehhcCCCCCCCCCCCCcchHHHHHHHHhhhChHHHHh
Q 018825 2 GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSSIEEVIAKFAQLTPQERAK 81 (350)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTf~KRr~GL~KKA~ELSvLCdaeVaLIiFSp~GKl~ef~s~~ssme~VLeRY~~~s~~er~k 81 (350)
||+||+|++|||+++|||||+|||+||||||+||||||||+||||||||+||+|+|++ ++|++||+||.++++..+.+
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s--~~~~~il~rY~~~~~~~~~~ 78 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS--TDMDKVLLKYTEYNEPHESR 78 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEES--SCHHHHHHHHHHCCSCCCEE
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCC--CCHHHHHHHHHhcCcccccC
Confidence 8999999999999999999999999999999999999999999999999999999986 78999999999998766555
Q ss_pred hhHHHHHHHH
Q 018825 82 RKLESLEALK 91 (350)
Q Consensus 82 ~~~~~le~L~ 91 (350)
...+..++|+
T Consensus 79 ~~~d~~e~~~ 88 (90)
T 3p57_A 79 TNSDIVEALN 88 (90)
T ss_dssp CHHHHHHHHH
T ss_pred ChHhHHHHHh
Confidence 5555455443
No 2
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=99.98 E-value=6.7e-35 Score=225.28 Aligned_cols=73 Identities=37% Similarity=0.698 Sum_probs=69.4
Q ss_pred CCccceeEEeccCCCCceeccccccchhhhhhhhhhccccceeehhcCCCCCCCCCCCCcchHHHHHHHHhhhCh
Q 018825 2 GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSSIEEVIAKFAQLTP 76 (350)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTf~KRr~GL~KKA~ELSvLCdaeVaLIiFSp~GKl~ef~s~~ssme~VLeRY~~~s~ 76 (350)
||+||+|++|||+++|||||+|||+||||||+||||||||||||||||++||+|+|++ ++|++||+||.+.++
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s--~~~~~il~ry~~~~~ 73 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS--TDMDKVLLKYTEYNE 73 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEES--SCHHHHHHHHHHC--
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCC--CCHHHHHHHHHhccC
Confidence 8999999999999999999999999999999999999999999999999999999986 789999999998864
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=99.97 E-value=4.8e-33 Score=223.83 Aligned_cols=75 Identities=37% Similarity=0.500 Sum_probs=70.9
Q ss_pred CCCccceeEEeccCCCCceeccccccchhhhhhhhhhccccceeehhcCCCCCCCCCCCCcchHHHHHHHHhhhChH
Q 018825 1 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSSIEEVIAKFAQLTPQ 77 (350)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTf~KRr~GL~KKA~ELSvLCdaeVaLIiFSp~GKl~ef~s~~ssme~VLeRY~~~s~~ 77 (350)
|||+||+|++|||+++|+|||+|||+||||||+||||||||+||||||||+||+|+|++ ++|+.||+||......
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s--ps~~~il~r~~G~~lw 90 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFST--PKFEPIVTQQEGRNLI 90 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEC--TTTTHHHHSHHHHHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecC--CCHHHHHHHhhCCcHH
Confidence 89999999999999999999999999999999999999999999999999999999987 7899999999775443
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=99.96 E-value=1.3e-32 Score=218.58 Aligned_cols=71 Identities=38% Similarity=0.516 Sum_probs=67.9
Q ss_pred CCCccceeEEeccCCCCceeccccccchhhhhhhhhhccccceeehhcCCCCCCCCCCCCcchHHHHHHHHhh
Q 018825 1 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSSIEEVIAKFAQ 73 (350)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTf~KRr~GL~KKA~ELSvLCdaeVaLIiFSp~GKl~ef~s~~ssme~VLeRY~~ 73 (350)
|||+||+|++|||+++|+|||+|||+||||||+||||||||+||||||||+|++|+|++ ++|+.||++|..
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s--~~~~~~i~~~~G 80 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT--RKLQPMITSETG 80 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEEC--GGGGGGTSSHHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecC--CCHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999987 899999996643
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=99.96 E-value=4e-32 Score=219.79 Aligned_cols=70 Identities=39% Similarity=0.528 Sum_probs=67.2
Q ss_pred CCCccceeEEeccCCCCceeccccccchhhhhhhhhhccccceeehhcCCCCCCCCCCCCcchHHHHHHHHh
Q 018825 1 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSSIEEVIAKFA 72 (350)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTf~KRr~GL~KKA~ELSvLCdaeVaLIiFSp~GKl~ef~s~~ssme~VLeRY~ 72 (350)
|||+||+|++|||+++|+|||+|||+||||||+||||||||+||||||||+||+|+|++ ++|+.||+++.
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s--~~~~~vi~~~~ 78 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT--RKLQPMITSET 78 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEEC--GGGGGGTSSHH
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecC--ccHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999986 79999998643
No 6
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=61.06 E-value=36 Score=27.21 Aligned_cols=58 Identities=16% Similarity=0.240 Sum_probs=42.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHhHhhcc---cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018825 111 SQTIEDLTNQARLLQSQLSEMHRRLRY---WTNPDKINSVEHLGQMENSLRDSLNHLRMHK 168 (350)
Q Consensus 111 ~~~vE~L~~ei~~Lq~qleelq~rlr~---~~ged~~LSveEL~qLE~qLe~sL~~IR~RK 168 (350)
...+|+|..++.+|+-++..|.++++. -.+.+..|+..+=+.+-.+.-.+|...-++|
T Consensus 7 ~~t~EeLaaeL~kLqmENK~LKkkl~~~g~~~p~d~~LTp~qKea~I~s~~~~Lss~A~~K 67 (110)
T 2oa5_A 7 DKTYEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSSSRALGAVAMRK 67 (110)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999974 2334578999888888777777776666655
No 7
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=44.54 E-value=1.1e+02 Score=23.72 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhhhhhHhhh
Q 018825 148 EHLGQMENSLRDSLNHLRMHKENLG--KQELMSLECTTQFQN 187 (350)
Q Consensus 148 eEL~qLE~qLe~sL~~IR~RK~qL~--~~ql~~Lq~keq~~~ 187 (350)
++|..++..|..+...+.......- -..+..|.|+-|++.
T Consensus 58 ~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 58 DSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566666666666666555432222 136777888877654
No 8
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=42.62 E-value=72 Score=22.67 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=33.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhhhhhhHhhhhcccccc
Q 018825 141 PDKINSVEHLGQMENSLRDSLNHLRM--HKENLGKQELMSLECTTQFQNGICIPFR 194 (350)
Q Consensus 141 ed~~LSveEL~qLE~qLe~sL~~IR~--RK~qL~~~ql~~Lq~keq~~~~~~~~l~ 194 (350)
.|++.+++|.-++.+.|..+=.+|.. +-++-+.++|--+|++-+-++..|.+||
T Consensus 6 sDgpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 6 SDGAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp -CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 34678999999888888777666633 1222334566667777555555554443
No 9
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=37.77 E-value=2.1e+02 Score=28.41 Aligned_cols=44 Identities=11% Similarity=0.008 Sum_probs=23.0
Q ss_pred cchhhhhhhhhhccccceeehhcCCCCCCCCCCCCcchHHHHHHHHhhh
Q 018825 26 HGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSSIEEVIAKFAQL 74 (350)
Q Consensus 26 ~GL~KKA~ELSvLCdaeVaLIiFSp~GKl~ef~s~~ssme~VLeRY~~~ 74 (350)
.|+-||.-|.. -||.-|.+.- +.+-.+|++...+.+.|-+|+.-
T Consensus 54 ~~~~~~~~~~~--~~a~~c~~~~---~~~G~~CPTtC~l~D~L~k~q~~ 97 (464)
T 1m1j_B 54 KQAMKKGPIIY--PDAGGCKHPL---DELGVLCPTGCELQTTLLKQEKT 97 (464)
T ss_dssp ---------CC--CCCSCEECSS---TTTCEEEECTTHHHHHHHHHHHH
T ss_pred chhhccCcccC--CCCCCccccC---CCccCcCCCccHHHHHHHHhhhh
Confidence 35677777776 7777776653 34334455567888888888663
No 10
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=33.66 E-value=1.4e+02 Score=26.72 Aligned_cols=14 Identities=14% Similarity=0.252 Sum_probs=7.5
Q ss_pred CCCCCCCCCCCCCC
Q 018825 229 VECSGSSSFGSYSG 242 (350)
Q Consensus 229 ~~c~~sl~~g~y~~ 242 (350)
+-|..+.-|=+|..
T Consensus 223 v~Cp~CgRIL~~~~ 236 (256)
T 3na7_A 223 ITCPYCGRILYAEG 236 (256)
T ss_dssp EECTTTCCEEECSC
T ss_pred EECCCCCeeEEeCc
Confidence 35666666644443
No 11
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=32.96 E-value=2.8e+02 Score=26.90 Aligned_cols=22 Identities=9% Similarity=0.093 Sum_probs=16.0
Q ss_pred CCCCCCCCcchHHHHHHHHhhh
Q 018825 53 KPSLCNGKRSSIEEVIAKFAQL 74 (350)
Q Consensus 53 Kl~ef~s~~ssme~VLeRY~~~ 74 (350)
++=.+|++...+.+.|.+|++-
T Consensus 14 ~~G~~CPT~C~i~d~L~k~e~~ 35 (409)
T 1m1j_C 14 RFGSYCPTTCGIADFFNKYRLT 35 (409)
T ss_dssp GGCCEEECTTHHHHHHHHHHHH
T ss_pred ccCCcCCCcccHHHHHHHHHhc
Confidence 3334555578899999999883
No 12
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=31.53 E-value=59 Score=18.85 Aligned_cols=13 Identities=38% Similarity=0.595 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 018825 115 EDLTNQARLLQSQ 127 (350)
Q Consensus 115 E~L~~ei~~Lq~q 127 (350)
|+|+..+++|+++
T Consensus 11 edlqerlrklrkk 23 (27)
T 3twe_A 11 EDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 13
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=31.23 E-value=2.9e+02 Score=27.87 Aligned_cols=13 Identities=15% Similarity=0.284 Sum_probs=8.7
Q ss_pred cchHHHHHHHHhh
Q 018825 61 RSSIEEVIAKFAQ 73 (350)
Q Consensus 61 ~ssme~VLeRY~~ 73 (350)
-..|..+|++..+
T Consensus 48 GCrLQglLdkqEr 60 (562)
T 3ghg_A 48 GCRMKGLIDEVNQ 60 (562)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccchhhhHHhhcC
Confidence 4568888877543
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=29.31 E-value=3.3e+02 Score=26.75 Aligned_cols=43 Identities=12% Similarity=0.030 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhhhh-hHhhhhcc
Q 018825 148 EHLGQMENSLRDSLNHLRMHKENLGK--QELMSLECT-TQFQNGIC 190 (350)
Q Consensus 148 eEL~qLE~qLe~sL~~IR~RK~qL~~--~ql~~Lq~k-eq~~~~~~ 190 (350)
++++.+|++.+.--++++..|.++.. +++..+..+ .+++++++
T Consensus 537 ~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 537 KETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55566666666666666665555432 344444333 33434333
No 15
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=27.85 E-value=76 Score=20.39 Aligned_cols=19 Identities=26% Similarity=0.167 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018825 155 NSLRDSLNHLRMHKENLGK 173 (350)
Q Consensus 155 ~qLe~sL~~IR~RK~qL~~ 173 (350)
..|+..|..++.-|.||+.
T Consensus 18 ~~l~~kl~~LkeEKHQLFl 36 (38)
T 2l5g_A 18 LKLEEKLLALQEEKHQLFL 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444555555666553
No 16
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=23.61 E-value=8.9 Score=30.54 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=31.8
Q ss_pred eccCCCCceeccccccchhhhhhhhhhccccceeehhcCCCCCCC
Q 018825 11 LENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPS 55 (350)
Q Consensus 11 Ien~~~RqvTf~KRr~GL~KKA~ELSvLCdaeVaLIiFSp~GKl~ 55 (350)
|.++.-...||-=.-.-|.+|.-+|+.+| ++.|+|.||-+
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~C-----~~a~~~~gkef 60 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNSC-----LVAQSAAGQSF 60 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTCE-----EEEEETTSCEE
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchhh-----heeeCcCCCEE
Confidence 34455566777778889999999999777 99999999843
No 17
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=23.52 E-value=4.5e+02 Score=28.81 Aligned_cols=8 Identities=38% Similarity=0.327 Sum_probs=3.4
Q ss_pred HHHhhhhh
Q 018825 173 KQELMSLE 180 (350)
Q Consensus 173 ~~ql~~Lq 180 (350)
.+|+++|.
T Consensus 1036 ~qq~~~l~ 1043 (1080)
T 2dfs_A 1036 KTEKEELN 1043 (1080)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444444
No 18
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=23.35 E-value=2.3e+02 Score=20.97 Aligned_cols=50 Identities=14% Similarity=0.227 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018825 115 EDLTNQARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLG 172 (350)
Q Consensus 115 E~L~~ei~~Lq~qleelq~rlr~~~ged~~LSveEL~qLE~qLe~sL~~IR~RK~qL~ 172 (350)
+.+..+...|...+.+++.+.. .-+++++..-..|+..|.++|.--...+
T Consensus 4 ~~l~~~~~sLE~~l~e~e~~~~--------~~~~~~q~~i~~lE~eL~~~r~e~~~q~ 53 (84)
T 1gk4_A 4 DALKGTNESLERQMREMEENFA--------VEAANYQDTIGRLQDEIQNMKEEMARHL 53 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555544431 2345555555566666666666554443
No 19
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.09 E-value=2.9e+02 Score=22.06 Aligned_cols=26 Identities=23% Similarity=0.393 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018825 147 VEHLGQMENSLRDSLNHLRMHKENLG 172 (350)
Q Consensus 147 veEL~qLE~qLe~sL~~IR~RK~qL~ 172 (350)
+++++..-..|+..|.++|.--...+
T Consensus 79 l~~~q~~i~~lE~eL~~~r~em~~ql 104 (131)
T 3tnu_A 79 LAQIQEMIGSVEEQLAQLRCEMEQQN 104 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455445556666666665544433
No 20
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=21.72 E-value=2.7e+02 Score=21.22 Aligned_cols=39 Identities=15% Similarity=0.272 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhhhhhHhhh
Q 018825 149 HLGQMENSLRDSLNHLRMHKENLG--KQELMSLECTTQFQN 187 (350)
Q Consensus 149 EL~qLE~qLe~sL~~IR~RK~qL~--~~ql~~Lq~keq~~~ 187 (350)
+|...+..|..+...+.......- -..+..|.|+-|++.
T Consensus 59 eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 59 EVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444555555555444443322221 135777777766654
Done!