BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018826
(350 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 116/241 (48%), Gaps = 27/241 (11%)
Query: 28 LRNLEVLDLVSNNLNGTIPKEIGTLR-NLMGLHLSSNNLTGE-LPQEIENLK-SLIRLFV 84
+R L+VLDL N +G +P+ + L +L+ L LSSNN +G LP +N K +L L++
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401
Query: 85 RNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRXX 144
+NN G IP TL + L L+L FN +GTIP +G L L L + +N L G I
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI--- 458
Query: 145 XXXXXXXXXXXXXXXXXXXXIPLEIGNLSALEELDLSDNKIHGIIPDELTKXXXXXXXXX 204
P E+ + LE L L N + G IP L+
Sbjct: 459 ---------------------PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497
Query: 205 XXXXXXGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPE 264
G+IP IG+L NL L LS N G+IP E+G+C L L LN N +GTI
Sbjct: 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557
Query: 265 M 265
M
Sbjct: 558 M 558
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 94/289 (32%), Positives = 132/289 (45%), Gaps = 28/289 (9%)
Query: 20 TIPKEIGSLRNLEVLDLVSNNLNGTIPKE-IGTLRNLMGLHLSSNNLTGELPQEIENLK- 77
+P GS LE L L SNN +G +P + + +R L L LS N +GELP+ + NL
Sbjct: 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 368
Query: 78 SLIRLFVRNNTLGGPIPSTLFR--LTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVN 135
SL+ L + +N GPI L + L+ LYL N F G IP + + L L + N
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428
Query: 136 KLTGAIRXXXXXXXXXXXXXXXXXXXXXXIPLEIGNLSALEELDLSDNKIHGIIPDELTK 195
L+G I P +G+LS L +L L N + G IP EL
Sbjct: 429 YLSGTI------------------------PSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464
Query: 196 XXXXXXXXXXXXXXXGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHN 255
G+IPS + NL ++ LS N+L G IP IG L L L++N
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524
Query: 256 SLDGTIRPEMGEILLLQNLDLSHNNLSGTITKTLCPMHSDMSFNRLEGE 304
S G I E+G+ L LDL+ N +GTI + ++ N + G+
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 104/369 (28%), Positives = 151/369 (40%), Gaps = 78/369 (21%)
Query: 18 TCTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLK 77
T IP + + L L L N L+GTIP +G+L L L L N L GE+PQE+ +K
Sbjct: 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 466
Query: 78 SLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKL 137
+L L + N L G IPS L TNL + L N+ G IP+ IG L+NL L + N
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526
Query: 138 TGAIRXXXXXXXXXXXXXXXXXXXXXXIPLEIGNLSALEELDLSDNKIHGIIPDELTKXX 197
+G IP E+G+ +L LDL+ N +G IP + K
Sbjct: 527 SG------------------------NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562
Query: 198 XXXXXXXXXXXXXGQIPS--------AIGKLFNLKYL--------------DLSKNKLGG 235
I + G L + + +++ GG
Sbjct: 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622
Query: 236 SIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTITKTLCPMHS- 294
N + L +++N L G I E+G + L L+L HN++SG+I + +
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 682
Query: 295 ---DMSFNRLEGEIPS-----------NLRDN---------------PPKSFAGNTGLCG 325
D+S N+L+G IP +L +N PP F N GLCG
Sbjct: 683 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742
Query: 326 HVEELPRME 334
+ LPR +
Sbjct: 743 Y--PLPRCD 749
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 91/297 (30%), Positives = 132/297 (44%), Gaps = 12/297 (4%)
Query: 24 EIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLF 83
++ NLE LD+ SNN + IP +G L L +S N L+G+ + I L L
Sbjct: 195 DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253
Query: 84 VRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREI-GHLKNLTYLFIKVNKLTGAIR 142
+ +N GPIP L +L+ L L N+F G IP + G LT L + N GA+
Sbjct: 254 ISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311
Query: 143 XXXXXXXXXXXXXXXXXXXXXXIPLE-IGNLSALEELDLSDNKIHGIIPDELTKXXXXXX 201
+P++ + + L+ LDLS N+ G +P+ LT
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 371
Query: 202 XXXXXXXXXGQ--IPSAIGKLFN-LKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLD 258
+P+ N L+ L L N G IP + NCSEL +L L+ N L
Sbjct: 372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 431
Query: 259 GTIRPEMGEILLLQNLDLSHNNLSGTITKTLCPMHS----DMSFNRLEGEIPSNLRD 311
GTI +G + L++L L N L G I + L + + + FN L GEIPS L +
Sbjct: 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 112/271 (41%), Gaps = 29/271 (10%)
Query: 11 IQPYTENTCTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELP 70
I + + T IP + + NL + L +N L G IPK IG L NL L LS+N+ +G +P
Sbjct: 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531
Query: 71 QEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYL 130
E+ + +SLI L + N G IP+ +F+ + G I + Y+
Sbjct: 532 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQS-------------GKIAANF--IAGKRYV 576
Query: 131 FIKVNKLTGAIRXXXXXXXXXXXXXXXXXXXXXXIPLEI-------------GNLSALEE 177
+IK + + P I N ++
Sbjct: 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636
Query: 178 LDLSDNKIHGIIPDELTKXXXXXXXXXXXXXXXGQIPSAIGKLFNLKYLDLSKNKLGGSI 237
LD+S N + G IP E+ G IP +G L L LDLS NKL G I
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 238 PTEIGNCSELKNLTLNHNSLDGTIRPEMGEI 268
P + + L + L++N+L G I PEMG+
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPI-PEMGQF 726
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 140/345 (40%), Gaps = 55/345 (15%)
Query: 36 LVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQ--EIENLKSLIRLFVRNNTLGGPI 93
L ++++NG++ +L L LS N+L+G + + + L L V +NTL P
Sbjct: 84 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 94 P-STLFRLTNLEVLYLGFNQFNGT------IPREIGHLKNLTYLFIKVNKLTGAIRXXXX 146
S +L +LEVL L N +G + G LK+L I NK++G +
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA---ISGNKISGDVDVSRC 199
Query: 147 XXXXXXXXXXXXXXXXXXIPLEIGNLSALEELDLSDNKIHGIIPDELTKXXXXXXXXXXX 206
IP +G+ SAL+ LD+S NK+ G ++
Sbjct: 200 VNLEFLDVSSNNFSTG--IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256
Query: 207 XXXXGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEI-GNCSELKNLTLNHNSLDGTIRPEM 265
G IP L +L+YL L++NK G IP + G C L L L+ N G + P
Sbjct: 257 NQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314
Query: 266 G---------------------EILL----LQNLDLSHNNLSGTITKTLCPMHS-----D 295
G + LL L+ LDLS N SG + ++L + + D
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374
Query: 296 MSFNRLEGEIPSNLRDNPPKS----FAGNTGLCGHVEELPRMEMC 336
+S N G I NL NP + + N G G + P + C
Sbjct: 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP--PTLSNC 417
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 86/213 (40%), Gaps = 22/213 (10%)
Query: 107 YLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRXXXXXXXXXXXXXXXXXXXXXXIP 166
+L + NG++ +LT L + N L+G + P
Sbjct: 83 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 167 LEIG---NLSALEELDLSDNKIHG------IIPDELTKXXXXXXXXXXXXXXXGQIPSAI 217
++ L++LE LDLS N I G ++ D + G + +
Sbjct: 142 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE---LKHLAISGNKISGDV--DV 196
Query: 218 GKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLS 277
+ NL++LD+S N IP +G+CS L++L ++ N L G + L+ L++S
Sbjct: 197 SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255
Query: 278 HNNLSGTITKTLCPMHS----DMSFNRLEGEIP 306
N G I P+ S ++ N+ GEIP
Sbjct: 256 SNQFVGPIPPL--PLKSLQYLSLAENKFTGEIP 286
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 116/241 (48%), Gaps = 27/241 (11%)
Query: 28 LRNLEVLDLVSNNLNGTIPKEIGTLR-NLMGLHLSSNNLTGE-LPQEIENLK-SLIRLFV 84
+R L+VLDL N +G +P+ + L +L+ L LSSNN +G LP +N K +L L++
Sbjct: 339 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 398
Query: 85 RNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRXX 144
+NN G IP TL + L L+L FN +GTIP +G L L L + +N L G I
Sbjct: 399 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI--- 455
Query: 145 XXXXXXXXXXXXXXXXXXXXIPLEIGNLSALEELDLSDNKIHGIIPDELTKXXXXXXXXX 204
P E+ + LE L L N + G IP L+
Sbjct: 456 ---------------------PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 494
Query: 205 XXXXXXGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPE 264
G+IP IG+L NL L LS N G+IP E+G+C L L LN N +GTI
Sbjct: 495 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 554
Query: 265 M 265
M
Sbjct: 555 M 555
Score = 104 bits (260), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 94/289 (32%), Positives = 132/289 (45%), Gaps = 28/289 (9%)
Query: 20 TIPKEIGSLRNLEVLDLVSNNLNGTIPKE-IGTLRNLMGLHLSSNNLTGELPQEIENLK- 77
+P GS LE L L SNN +G +P + + +R L L LS N +GELP+ + NL
Sbjct: 306 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 365
Query: 78 SLIRLFVRNNTLGGPIPSTLFR--LTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVN 135
SL+ L + +N GPI L + L+ LYL N F G IP + + L L + N
Sbjct: 366 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 425
Query: 136 KLTGAIRXXXXXXXXXXXXXXXXXXXXXXIPLEIGNLSALEELDLSDNKIHGIIPDELTK 195
L+G I P +G+LS L +L L N + G IP EL
Sbjct: 426 YLSGTI------------------------PSSLGSLSKLRDLKLWLNMLEGEIPQELMY 461
Query: 196 XXXXXXXXXXXXXXXGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHN 255
G+IPS + NL ++ LS N+L G IP IG L L L++N
Sbjct: 462 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 521
Query: 256 SLDGTIRPEMGEILLLQNLDLSHNNLSGTITKTLCPMHSDMSFNRLEGE 304
S G I E+G+ L LDL+ N +GTI + ++ N + G+
Sbjct: 522 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 570
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 104/369 (28%), Positives = 151/369 (40%), Gaps = 78/369 (21%)
Query: 18 TCTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLK 77
T IP + + L L L N L+GTIP +G+L L L L N L GE+PQE+ +K
Sbjct: 404 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 463
Query: 78 SLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKL 137
+L L + N L G IPS L TNL + L N+ G IP+ IG L+NL L + N
Sbjct: 464 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 523
Query: 138 TGAIRXXXXXXXXXXXXXXXXXXXXXXIPLEIGNLSALEELDLSDNKIHGIIPDELTKXX 197
+G IP E+G+ +L LDL+ N +G IP + K
Sbjct: 524 SG------------------------NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 559
Query: 198 XXXXXXXXXXXXXGQIPS--------AIGKLFNLKYL--------------DLSKNKLGG 235
I + G L + + +++ GG
Sbjct: 560 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 619
Query: 236 SIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTITKTLCPMHS- 294
N + L +++N L G I E+G + L L+L HN++SG+I + +
Sbjct: 620 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 679
Query: 295 ---DMSFNRLEGEIPS-----------NLRDN---------------PPKSFAGNTGLCG 325
D+S N+L+G IP +L +N PP F N GLCG
Sbjct: 680 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 739
Query: 326 HVEELPRME 334
+ LPR +
Sbjct: 740 Y--PLPRCD 746
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 91/297 (30%), Positives = 132/297 (44%), Gaps = 12/297 (4%)
Query: 24 EIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLF 83
++ NLE LD+ SNN + IP +G L L +S N L+G+ + I L L
Sbjct: 192 DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 250
Query: 84 VRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREI-GHLKNLTYLFIKVNKLTGAIR 142
+ +N GPIP L +L+ L L N+F G IP + G LT L + N GA+
Sbjct: 251 ISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 308
Query: 143 XXXXXXXXXXXXXXXXXXXXXXIPLE-IGNLSALEELDLSDNKIHGIIPDELTKXXXXXX 201
+P++ + + L+ LDLS N+ G +P+ LT
Sbjct: 309 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 368
Query: 202 XXXXXXXXXGQ--IPSAIGKLFN-LKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLD 258
+P+ N L+ L L N G IP + NCSEL +L L+ N L
Sbjct: 369 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 428
Query: 259 GTIRPEMGEILLLQNLDLSHNNLSGTITKTLCPMHS----DMSFNRLEGEIPSNLRD 311
GTI +G + L++L L N L G I + L + + + FN L GEIPS L +
Sbjct: 429 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 485
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 112/271 (41%), Gaps = 29/271 (10%)
Query: 11 IQPYTENTCTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELP 70
I + + T IP + + NL + L +N L G IPK IG L NL L LS+N+ +G +P
Sbjct: 469 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 528
Query: 71 QEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYL 130
E+ + +SLI L + N G IP+ +F+ + G I + Y+
Sbjct: 529 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQS-------------GKIAANF--IAGKRYV 573
Query: 131 FIKVNKLTGAIRXXXXXXXXXXXXXXXXXXXXXXIPLEI-------------GNLSALEE 177
+IK + + P I N ++
Sbjct: 574 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 633
Query: 178 LDLSDNKIHGIIPDELTKXXXXXXXXXXXXXXXGQIPSAIGKLFNLKYLDLSKNKLGGSI 237
LD+S N + G IP E+ G IP +G L L LDLS NKL G I
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 238 PTEIGNCSELKNLTLNHNSLDGTIRPEMGEI 268
P + + L + L++N+L G I PEMG+
Sbjct: 694 PQAMSALTMLTEIDLSNNNLSGPI-PEMGQF 723
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 140/345 (40%), Gaps = 55/345 (15%)
Query: 36 LVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQ--EIENLKSLIRLFVRNNTLGGPI 93
L ++++NG++ +L L LS N+L+G + + + L L V +NTL P
Sbjct: 81 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 94 P-STLFRLTNLEVLYLGFNQFNGT------IPREIGHLKNLTYLFIKVNKLTGAIRXXXX 146
S +L +LEVL L N +G + G LK+L I NK++G +
Sbjct: 140 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA---ISGNKISGDVDVSRC 196
Query: 147 XXXXXXXXXXXXXXXXXXIPLEIGNLSALEELDLSDNKIHGIIPDELTKXXXXXXXXXXX 206
IP +G+ SAL+ LD+S NK+ G ++
Sbjct: 197 VNLEFLDVSSNNFSTG--IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 253
Query: 207 XXXXGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEI-GNCSELKNLTLNHNSLDGTIRPEM 265
G IP L +L+YL L++NK G IP + G C L L L+ N G + P
Sbjct: 254 NQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 311
Query: 266 G---------------------EILL----LQNLDLSHNNLSGTITKTLCPMHS-----D 295
G + LL L+ LDLS N SG + ++L + + D
Sbjct: 312 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 371
Query: 296 MSFNRLEGEIPSNLRDNPPKS----FAGNTGLCGHVEELPRMEMC 336
+S N G I NL NP + + N G G + P + C
Sbjct: 372 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP--PTLSNC 414
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 86/213 (40%), Gaps = 22/213 (10%)
Query: 107 YLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRXXXXXXXXXXXXXXXXXXXXXXIP 166
+L + NG++ +LT L + N L+G + P
Sbjct: 80 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 167 LEIG---NLSALEELDLSDNKIHG------IIPDELTKXXXXXXXXXXXXXXXGQIPSAI 217
++ L++LE LDLS N I G ++ D + G + +
Sbjct: 139 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE---LKHLAISGNKISGDV--DV 193
Query: 218 GKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLS 277
+ NL++LD+S N IP +G+CS L++L ++ N L G + L+ L++S
Sbjct: 194 SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 252
Query: 278 HNNLSGTITKTLCPMHS----DMSFNRLEGEIP 306
N G I P+ S ++ N+ GEIP
Sbjct: 253 SNQFVGPIPP--LPLKSLQYLSLAENKFTGEIP 283
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 124/292 (42%), Gaps = 64/292 (21%)
Query: 45 IPKEIGTLRNLMGLHLSS-NNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNL 103
IP + L L L++ NNL G +P I L L L++ + + G IP L ++ L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 104 EVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRXXXXXXXXXXXXXXXXXXXXX 163
L +N +GT+P I L NL + N+++GA
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA----------------------- 164
Query: 164 XIPLEIGNLSAL-EELDLSDNKIHGIIPDELTKXXXXXXXXXXXXXXXGQIPSAIGKLFN 222
IP G+ S L + +S N++ G IP N
Sbjct: 165 -IPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-------------------------LN 198
Query: 223 LKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQN---LDLSHN 279
L ++DLS+N L G G+ + + L NSL ++G++ L +N LDL +N
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF----DLGKVGLSKNLNGLDLRNN 254
Query: 280 NLSGTITKTLCP---MHS-DMSFNRLEGEIPS--NLRDNPPKSFAGNTGLCG 325
+ GT+ + L +HS ++SFN L GEIP NL+ ++A N LCG
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 87/211 (41%), Gaps = 7/211 (3%)
Query: 21 IPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLI 80
IP I L L L + N++G IP + ++ L+ L S N L+G LP I +L +L+
Sbjct: 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152
Query: 81 RLFVRNNTLGGPIPSTLFRLTNL-EVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTG 139
+ N + G IP + + L + + N+ G IP +L NL ++ + N L G
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEG 211
Query: 140 AIRXXXXXXXXXXXXXXXXXXXXXXIPLEIGNLSALEELDLSDNKIHGIIPDELTKXXXX 199
+ ++G L LDL +N+I+G +P LT+
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270
Query: 200 XXXXXXXXXXXGQIPSAIGKLFNLKYLDLSK 230
G+IP NL+ D+S
Sbjct: 271 HSLNVSFNNLCGEIPQG----GNLQRFDVSA 297
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 24 EIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLF 83
++G +NL LDL +N + GT+P+ + L+ L L++S NNL GE+PQ + + +
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAY 298
Query: 84 VRNNTL-GGPIPS 95
N L G P+P+
Sbjct: 299 ANNKCLCGSPLPA 311
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 69/134 (51%), Gaps = 12/134 (8%)
Query: 10 DIQPYTENTCTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGEL 69
D+ + N+ + ++ VL+L SN L G++ + + ++ LH NN +
Sbjct: 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLH---NNRIMSI 465
Query: 70 PQEIENLKSLIRLFVRNNTLGGPIPSTLF-RLTNLEVLYLGFNQFNGTIPREIGHLKNLT 128
P+++ +L++L L V +N L +P +F RLT+L+ ++L N ++ T P +
Sbjct: 466 PKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP-------GIR 517
Query: 129 YLFIKVNKLTGAIR 142
YL +NK +G +R
Sbjct: 518 YLSEWINKHSGVVR 531
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 15/87 (17%)
Query: 224 KYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILL----LQNLDLSHN 279
K L LS+N + +I SEL+ L L+HN IR + L L+ LD+SHN
Sbjct: 55 KALSLSQNSISELRMPDISFLSELRVLRLSHNR----IRSLDFHVFLFNQDLEYLDVSHN 110
Query: 280 NLSGTITKTLCPM----HSDMSFNRLE 302
L + CPM H D+SFN +
Sbjct: 111 RLQNI---SCCPMASLRHLDLSFNDFD 134
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 20 TIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEI-ENLKS 78
IP I + + + LDL SN L+ K L L L+L+ N L LP I + LK+
Sbjct: 30 AIPSNIPA--DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKN 86
Query: 79 LIRLFVRNNTLGGPIPSTLF-RLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKL 137
L L+V +N L +P +F +L NL L L NQ PR L LTYL + N+L
Sbjct: 87 LETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 83/211 (39%), Gaps = 38/211 (18%)
Query: 81 RLFVRNNTLGGPIPSTLF-RLTNLEVLYLGFNQFNGTIPREI-GHLKNLTYLFIKVNKLT 138
+L +++N L +PS F RLT L +LYL N+ T+P I LKNL L++ NKL
Sbjct: 41 KLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ 98
Query: 139 GAIRXXXXXXXXXXXXXXXXXXXXXXIPLEI-GNLSALEELDLSDNKIHGIIP---DELT 194
+P+ + L L EL L N++ + P D LT
Sbjct: 99 A-------------------------LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT 133
Query: 195 KXXXXXXXXXXXXXXXGQIPSAI-GKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLN 253
K +P + KL +LK L L N+L +ELK L L+
Sbjct: 134 KLTYLSLGYNELQ----SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189
Query: 254 HNSLDGTIRPEMGEILLLQNLDLSHNNLSGT 284
+N L + L+ L L N T
Sbjct: 190 NNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 51/120 (42%), Gaps = 3/120 (2%)
Query: 20 TIPKEI-GSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKS 78
T+P I L+NLE L + N L L NL L L N L P+ ++L
Sbjct: 75 TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK 134
Query: 79 LIRLFVRNNTLGGPIPSTLF-RLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKL 137
L L + N L +P +F +LT+L+ L L NQ L L L + N+L
Sbjct: 135 LTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 45/109 (41%), Gaps = 2/109 (1%)
Query: 28 LRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEI-ENLKSLIRLFVRN 86
L NL L L N L P+ +L L L L N L LP+ + + L SL L + N
Sbjct: 108 LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYN 166
Query: 87 NTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVN 135
N L +LT L+ L L NQ L+ L L ++ N
Sbjct: 167 NQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
Query: 23 KEIGSLRNLEVLDLVSNNLNGTIPKEI-GTLRNLMGLHLSSNNLTGELPQEIENLKSLIR 81
K L L +L L N L T+P I L+NL L ++ N L + L +L
Sbjct: 55 KAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAE 113
Query: 82 LFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREI 121
L + N L P LT L L LG+N+ ++P+ +
Sbjct: 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGV 152
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 66/136 (48%), Gaps = 9/136 (6%)
Query: 3 YQFHQGQDIQPYTENTCTIPKEIGSLRNL-EVLDLVSNNLNGTIPKEIGTLRNLMGLHLS 61
Y + DI EN +PK+ L LDL SN I I L L+L+
Sbjct: 201 YSIDEDDDI----ENRMVMPKDSKYDDQLWHALDL-SNLQIFNISANIFKYDFLTRLYLN 255
Query: 62 SNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREI 121
N+LT ELP EI+NL +L L + +N L +P+ L L+ Y F+ T+P E
Sbjct: 256 GNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYF-FDNMVTTLPWEF 312
Query: 122 GHLKNLTYLFIKVNKL 137
G+L NL +L ++ N L
Sbjct: 313 GNLCNLQFLGVEGNPL 328
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 212 QIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLL 271
++P+ I L NL+ LDLS N+L S+P E+G+C +LK N + T+ E G + L
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRL-TSLPAELGSCFQLKYFYFFDNMV-TTLPWEFGNLCNL 318
Query: 272 QNLDLSHNNLSGTITKTL 289
Q L + N L K L
Sbjct: 319 QFLGVEGNPLEKQFLKIL 336
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 26/94 (27%)
Query: 165 IPLEIGNLSALEELDLSDNKIHGIIPDELTKXXXXXXXXXXXXXXXGQIPSAIGKLFNLK 224
+P EI NLS L LDLS N++ +P+ +G F LK
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRL-------------------------TSLPAELGSCFQLK 296
Query: 225 YLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLD 258
Y N + ++P E GN L+ L + N L+
Sbjct: 297 YFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLE 329
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 96/236 (40%), Gaps = 50/236 (21%)
Query: 52 LRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFN 111
L NL ++ S+N LT P ++NL L+ + + NN + P L LTNL L L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 112 QFNGTIPREIGHLKNLTYLFIKVNKL---TGAIRXXXXXXXXXXXXXXXXXXXXXXIPLE 168
Q +I LKNLT L N+L + I
Sbjct: 118 QI-----TDIDPLKNLTNL----NRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKP 168
Query: 169 IGNLSALEELDLSDNKIHGIIPDELTKXXXXXXXXXXXXXXXGQIPSAIGKLFNLKYLDL 228
+ NL+ LE LD+S NK+ I S + KL NL+ L
Sbjct: 169 LANLTTLERLDISSNKVSDI--------------------------SVLAKLTNLESLIA 202
Query: 229 SKNKLGGSIPTEIGNCSELKNLTLNHNSLD--GTIRPEMGEILLLQNLDLSHNNLS 282
+ N++ P +G + L L+LN N L GT + + L +LDL++N +S
Sbjct: 203 TNNQISDITP--LGILTNLDELSLNGNQLKDIGT----LASLTNLTDLDLANNQIS 252
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 73/166 (43%), Gaps = 40/166 (24%)
Query: 28 LRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNN 87
L NL L+L SN ++ + L +L L SSN +T P + NL +L RL + +N
Sbjct: 128 LTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSN 183
Query: 88 TLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRXXXXX 147
+ S L +LTNLE L NQ + P +G L NL L + N+L
Sbjct: 184 KVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK--------- 230
Query: 148 XXXXXXXXXXXXXXXXXIPLEIGNLSA---LEELDLSDNKIHGIIP 190
+IG L++ L +LDL++N+I + P
Sbjct: 231 --------------------DIGTLASLTNLTDLDLANNQISNLAP 256
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 59/118 (50%), Gaps = 16/118 (13%)
Query: 25 IGSLRNLEVLDLVSNNLNGTIPKEIGTLR---NLMGLHLSSNNLTGELPQEIENLKSLIR 81
+G L NL+ L +LNG K+IGTL NL L L++N ++ P + L L
Sbjct: 213 LGILTNLDEL-----SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE 265
Query: 82 LFVRNNTLGGPIP-STLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLT 138
L + N + P + L LTNLE L NQ P I +LKNLTYL + N ++
Sbjct: 266 LKLGANQISNISPLAGLTALTNLE---LNENQLEDISP--ISNLKNLTYLTLYFNNIS 318
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 25 IGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFV 84
+ L L L+L N L P I L+NL L L NN++ P + +L L RLF
Sbjct: 279 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 334
Query: 85 RNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGA 140
NN + S+L LTN+ L G NQ + P + +L +T L + T A
Sbjct: 335 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 386
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 96/236 (40%), Gaps = 50/236 (21%)
Query: 52 LRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFN 111
L NL ++ S+N LT P ++NL L+ + + NN + P L LTNL L L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 112 QFNGTIPREIGHLKNLTYLFIKVNKL---TGAIRXXXXXXXXXXXXXXXXXXXXXXIPLE 168
Q +I LKNLT L N+L + I
Sbjct: 118 QI-----TDIDPLKNLTNL----NRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKP 168
Query: 169 IGNLSALEELDLSDNKIHGIIPDELTKXXXXXXXXXXXXXXXGQIPSAIGKLFNLKYLDL 228
+ NL+ LE LD+S NK+ I S + KL NL+ L
Sbjct: 169 LANLTTLERLDISSNKVSDI--------------------------SVLAKLTNLESLIA 202
Query: 229 SKNKLGGSIPTEIGNCSELKNLTLNHNSLD--GTIRPEMGEILLLQNLDLSHNNLS 282
+ N++ P +G + L L+LN N L GT + + L +LDL++N +S
Sbjct: 203 TNNQISDITP--LGILTNLDELSLNGNQLKDIGT----LASLTNLTDLDLANNQIS 252
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 112/261 (42%), Gaps = 54/261 (20%)
Query: 28 LRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNN 87
L NL L+L SN ++ + L +L L SSN +T P + NL +L RL + +N
Sbjct: 128 LTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSN 183
Query: 88 TLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRXXXXX 147
+ S L +LTNLE L NQ + P +G L NL L + N+L
Sbjct: 184 KVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK--------- 230
Query: 148 XXXXXXXXXXXXXXXXXIPLEIGNLSA---LEELDLSDNKIHGIIP-DELTKXXXXXXXX 203
+IG L++ L +LDL++N+I + P LTK
Sbjct: 231 --------------------DIGTLASLTNLTDLDLANNQISNLAPLSGLTK-------L 263
Query: 204 XXXXXXXGQIP--SAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTI 261
QI S + L L L+L++N+L P I N L LTL N++ I
Sbjct: 264 TELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD-I 320
Query: 262 RPEMGEILLLQNLDLSHNNLS 282
P + + LQ L S+N +S
Sbjct: 321 SP-VSSLTKLQRLFFSNNKVS 340
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 59/118 (50%), Gaps = 16/118 (13%)
Query: 25 IGSLRNLEVLDLVSNNLNGTIPKEIGTLR---NLMGLHLSSNNLTGELPQEIENLKSLIR 81
+G L NL+ L +LNG K+IGTL NL L L++N ++ P + L L
Sbjct: 213 LGILTNLDEL-----SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE 265
Query: 82 LFVRNNTLGGPIP-STLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLT 138
L + N + P + L LTNLE L NQ P I +LKNLTYL + N ++
Sbjct: 266 LKLGANQISNISPLAGLTALTNLE---LNENQLEDISP--ISNLKNLTYLTLYFNNIS 318
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 25 IGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFV 84
+ L L L+L N L P I L+NL L L NN++ P + +L L RLF
Sbjct: 279 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 334
Query: 85 RNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGA 140
NN + S+L LTN+ L G NQ + P + +L +T L + T A
Sbjct: 335 SNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 386
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 96/236 (40%), Gaps = 50/236 (21%)
Query: 52 LRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFN 111
L NL ++ S+N LT P ++NL L+ + + NN + P L LTNL L L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 112 QFNGTIPREIGHLKNLTYLFIKVNKL---TGAIRXXXXXXXXXXXXXXXXXXXXXXIPLE 168
Q +I LKNLT L N+L + I
Sbjct: 118 QI-----TDIDPLKNLTNL----NRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP 168
Query: 169 IGNLSALEELDLSDNKIHGIIPDELTKXXXXXXXXXXXXXXXGQIPSAIGKLFNLKYLDL 228
+ NL+ LE LD+S NK+ I S + KL NL+ L
Sbjct: 169 LANLTTLERLDISSNKVSDI--------------------------SVLAKLTNLESLIA 202
Query: 229 SKNKLGGSIPTEIGNCSELKNLTLNHNSLD--GTIRPEMGEILLLQNLDLSHNNLS 282
+ N++ P +G + L L+LN N L GT + + L +LDL++N +S
Sbjct: 203 TNNQISDITP--LGILTNLDELSLNGNQLKDIGT----LASLTNLTDLDLANNQIS 252
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 74/166 (44%), Gaps = 40/166 (24%)
Query: 28 LRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNN 87
L NL L+L SN ++ + L +L L+ SSN +T P + NL +L RL + +N
Sbjct: 128 LTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSN 183
Query: 88 TLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRXXXXX 147
+ S L +LTNLE L NQ + P +G L NL L + N+L
Sbjct: 184 KVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK--------- 230
Query: 148 XXXXXXXXXXXXXXXXXIPLEIGNLSA---LEELDLSDNKIHGIIP 190
+IG L++ L +LDL++N+I + P
Sbjct: 231 --------------------DIGTLASLTNLTDLDLANNQISNLAP 256
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 59/118 (50%), Gaps = 16/118 (13%)
Query: 25 IGSLRNLEVLDLVSNNLNGTIPKEIGTLR---NLMGLHLSSNNLTGELPQEIENLKSLIR 81
+G L NL+ L +LNG K+IGTL NL L L++N ++ P + L L
Sbjct: 213 LGILTNLDEL-----SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE 265
Query: 82 LFVRNNTLGGPIP-STLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLT 138
L + N + P + L LTNLE L NQ P I +LKNLTYL + N ++
Sbjct: 266 LKLGANQISNISPLAGLTALTNLE---LNENQLEDISP--ISNLKNLTYLTLYFNNIS 318
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 25 IGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFV 84
+ L L L+L N L P I L+NL L L NN++ P + +L L RLF
Sbjct: 279 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 334
Query: 85 RNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGA 140
NN + S+L LTN+ L G NQ + P + +L +T L + T A
Sbjct: 335 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 386
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 7/132 (5%)
Query: 8 GQDIQPYTENTCTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTG 67
G + ++ ++P I + N ++L L N + P +L NL L+L SN L G
Sbjct: 21 GTTVDCRSKRHASVPAGIPT--NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-G 77
Query: 68 ELPQEI-ENLKSLIRLFVRNNTLGGPIPSTLF-RLTNLEVLYLGFNQFNGTIPREIGHLK 125
LP + ++L L L + N L +PS +F RL +L+ L++ N+ +PR I L
Sbjct: 78 ALPVGVFDSLTQLTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLT 135
Query: 126 NLTYLFIKVNKL 137
+LT+L + N+L
Sbjct: 136 HLTHLALDQNQL 147
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 42 NGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLF-RL 100
+ ++P I T N L+L N +T P ++L +L L++ +N LG +P +F L
Sbjct: 31 HASVPAGIPT--NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-LPVGVFDSL 87
Query: 101 TNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLT 138
T L VL LG NQ L +L LF+ NKLT
Sbjct: 88 TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT 125
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Query: 22 PKEIGSLRNLEVLDLVSNNLNGTIPKEI-GTLRNLMGLHLSSNNLTGELPQEI-ENLKSL 79
P SL NL+ L L SN L G +P + +L L L L +N LT LP + + L L
Sbjct: 57 PGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHL 114
Query: 80 IRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTG 139
LF+ N L +P + RLT+L L L NQ L +LT+ ++ N
Sbjct: 115 KELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173
Query: 140 AIR 142
R
Sbjct: 174 ECR 176
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 97/237 (40%), Gaps = 53/237 (22%)
Query: 52 LRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFN 111
L NL ++ S+N LT P ++NL L+ + + NN + P L LTNL L L N
Sbjct: 66 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 121
Query: 112 QFNGTIPREIGHLKNLTYLFIKVNKLTGAIRXXXXXXXXXXXXXXXXXXXXXXI----PL 167
Q +I LKNLT L N+L + + PL
Sbjct: 122 QI-----TDIDPLKNLTNL----NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPL 172
Query: 168 EIGNLSALEELDLSDNKIHGIIPDELTKXXXXXXXXXXXXXXXGQIPSAIGKLFNLKYLD 227
NL+ LE LD+S NK+ I S + KL NL+ L
Sbjct: 173 --ANLTTLERLDISSNKVSDI--------------------------SVLAKLTNLESLI 204
Query: 228 LSKNKLGGSIPTEIGNCSELKNLTLNHNSLD--GTIRPEMGEILLLQNLDLSHNNLS 282
+ N++ P +G + L L+LN N L GT + + L +LDL++N +S
Sbjct: 205 ATNNQISDITP--LGILTNLDELSLNGNQLKDIGT----LASLTNLTDLDLANNQIS 255
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 59/118 (50%), Gaps = 16/118 (13%)
Query: 25 IGSLRNLEVLDLVSNNLNGTIPKEIGTLR---NLMGLHLSSNNLTGELPQEIENLKSLIR 81
+G L NL+ L +LNG K+IGTL NL L L++N ++ P + L L
Sbjct: 216 LGILTNLDEL-----SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE 268
Query: 82 LFVRNNTLGGPIP-STLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLT 138
L + N + P + L LTNLE L NQ P I +LKNLTYL + N ++
Sbjct: 269 LKLGANQISNISPLAGLTALTNLE---LNENQLEDISP--ISNLKNLTYLTLYFNNIS 321
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 25 IGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFV 84
+ L L L+L N L P I L+NL L L NN++ P + +L L RLF
Sbjct: 282 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 337
Query: 85 RNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGA 140
NN + S+L LTN+ L G NQ + P + +L +T L + T A
Sbjct: 338 ANNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 389
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 111/262 (42%), Gaps = 57/262 (21%)
Query: 28 LRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLH-LSSNNLTGELPQEIENLKSLIRLFVRN 86
L NL L+L SN + +I L L L LS N +L + + NL +L RL + +
Sbjct: 132 LTNLNRLELSSNTI-----SDISALSGLTSLQQLSFGNQVTDL-KPLANLTTLERLDISS 185
Query: 87 NTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRXXXX 146
N + S L +LTNLE L NQ + P +G L NL L + N+L
Sbjct: 186 NKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-------- 233
Query: 147 XXXXXXXXXXXXXXXXXXIPLEIGNLSA---LEELDLSDNKIHGIIP-DELTKXXXXXXX 202
+IG L++ L +LDL++N+I + P LTK
Sbjct: 234 ---------------------DIGTLASLTNLTDLDLANNQISNLAPLSGLTK------- 265
Query: 203 XXXXXXXXGQIP--SAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGT 260
QI S + L L L+L++N+L P I N L LTL N++
Sbjct: 266 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD- 322
Query: 261 IRPEMGEILLLQNLDLSHNNLS 282
I P + + LQ L ++N +S
Sbjct: 323 ISP-VSSLTKLQRLFFANNKVS 343
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 97/237 (40%), Gaps = 53/237 (22%)
Query: 52 LRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFN 111
L NL ++ S+N LT P ++NL L+ + + NN + P L LTNL L L N
Sbjct: 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 122
Query: 112 QFNGTIPREIGHLKNLTYLFIKVNKLTGAIRXXXXXXXXXXXXXXXXXXXXXXI----PL 167
Q +I LKNLT L N+L + + PL
Sbjct: 123 QI-----TDIDPLKNLTNL----NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPL 173
Query: 168 EIGNLSALEELDLSDNKIHGIIPDELTKXXXXXXXXXXXXXXXGQIPSAIGKLFNLKYLD 227
NL+ LE LD+S NK+ I S + KL NL+ L
Sbjct: 174 --ANLTTLERLDISSNKVSDI--------------------------SVLAKLTNLESLI 205
Query: 228 LSKNKLGGSIPTEIGNCSELKNLTLNHNSLD--GTIRPEMGEILLLQNLDLSHNNLS 282
+ N++ P +G + L L+LN N L GT + + L +LDL++N +S
Sbjct: 206 ATNNQISDITP--LGILTNLDELSLNGNQLKDIGT----LASLTNLTDLDLANNQIS 256
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 59/118 (50%), Gaps = 16/118 (13%)
Query: 25 IGSLRNLEVLDLVSNNLNGTIPKEIGTLR---NLMGLHLSSNNLTGELPQEIENLKSLIR 81
+G L NL+ L +LNG K+IGTL NL L L++N ++ P + L L
Sbjct: 217 LGILTNLDEL-----SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE 269
Query: 82 LFVRNNTLGGPIP-STLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLT 138
L + N + P + L LTNLE L NQ P I +LKNLTYL + N ++
Sbjct: 270 LKLGANQISNISPLAGLTALTNLE---LNENQLEDISP--ISNLKNLTYLTLYFNNIS 322
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 25 IGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFV 84
+ L L L+L N L P I L+NL L L NN++ P + +L L RLF
Sbjct: 283 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 338
Query: 85 RNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGA 140
NN + S+L LTN+ L G NQ + P + +L +T L + T A
Sbjct: 339 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 72/167 (43%), Gaps = 43/167 (25%)
Query: 28 LRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLH-LSSNNLTGELPQEIENLKSLIRLFVRN 86
L NL L+L SN + +I L L L LS N +L + + NL +L RL + +
Sbjct: 133 LTNLNRLELSSNTI-----SDISALSGLTSLQQLSFGNQVTDL-KPLANLTTLERLDISS 186
Query: 87 NTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRXXXX 146
N + S L +LTNLE L NQ + P +G L NL L + N+L
Sbjct: 187 NKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-------- 234
Query: 147 XXXXXXXXXXXXXXXXXXIPLEIGNLSA---LEELDLSDNKIHGIIP 190
+IG L++ L +LDL++N+I + P
Sbjct: 235 ---------------------DIGTLASLTNLTDLDLANNQISNLAP 260
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 97/237 (40%), Gaps = 53/237 (22%)
Query: 52 LRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFN 111
L NL ++ S+N LT P ++NL L+ + + NN + P L LTNL L L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 112 QFNGTIPREIGHLKNLTYLFIKVNKLTGAIRXXXXXXXXXXXXXXXXXXXXXXI----PL 167
Q +I LKNLT L N+L + + PL
Sbjct: 118 QI-----TDIDPLKNLTNL----NRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPL 168
Query: 168 EIGNLSALEELDLSDNKIHGIIPDELTKXXXXXXXXXXXXXXXGQIPSAIGKLFNLKYLD 227
NL+ LE LD+S NK+ I S + KL NL+ L
Sbjct: 169 --ANLTTLERLDISSNKVSDI--------------------------SVLAKLTNLESLI 200
Query: 228 LSKNKLGGSIPTEIGNCSELKNLTLNHNSLD--GTIRPEMGEILLLQNLDLSHNNLS 282
+ N++ P +G + L L+LN N L GT + + L +LDL++N +S
Sbjct: 201 ATNNQISDITP--LGILTNLDELSLNGNQLKDIGT----LASLTNLTDLDLANNQIS 251
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 59/118 (50%), Gaps = 16/118 (13%)
Query: 25 IGSLRNLEVLDLVSNNLNGTIPKEIGTLR---NLMGLHLSSNNLTGELPQEIENLKSLIR 81
+G L NL+ L +LNG K+IGTL NL L L++N ++ P + L L
Sbjct: 212 LGILTNLDEL-----SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE 264
Query: 82 LFVRNNTLGGPIP-STLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLT 138
L + N + P + L LTNLE L NQ P I +LKNLTYL + N ++
Sbjct: 265 LKLGANQISNISPLAGLTALTNLE---LNENQLEDISP--ISNLKNLTYLTLYFNNIS 317
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 25 IGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFV 84
+ L L L+L N L P I L+NL L L NN++ P + +L L RLF
Sbjct: 278 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 333
Query: 85 RNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGA 140
NN + S+L LTN+ L G NQ + P + +L +T L + T A
Sbjct: 334 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 385
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 72/167 (43%), Gaps = 43/167 (25%)
Query: 28 LRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLH-LSSNNLTGELPQEIENLKSLIRLFVRN 86
L NL L+L SN + +I L L L L+ N +L + + NL +L RL + +
Sbjct: 128 LTNLNRLELSSNTI-----SDISALSGLTSLQQLNFGNQVTDL-KPLANLTTLERLDISS 181
Query: 87 NTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRXXXX 146
N + S L +LTNLE L NQ + P +G L NL L + N+L
Sbjct: 182 NKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-------- 229
Query: 147 XXXXXXXXXXXXXXXXXXIPLEIGNLSA---LEELDLSDNKIHGIIP 190
+IG L++ L +LDL++N+I + P
Sbjct: 230 ---------------------DIGTLASLTNLTDLDLANNQISNLAP 255
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 97/237 (40%), Gaps = 53/237 (22%)
Query: 52 LRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFN 111
L NL ++ S+N LT P ++NL L+ + + NN + P L LTNL L L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 112 QFNGTIPREIGHLKNLTYLFIKVNKLTGAIRXXXXXXXXXXXXXXXXXXXXXXI----PL 167
Q +I LKNLT L N+L + + PL
Sbjct: 118 QI-----TDIDPLKNLTNL----NRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPL 168
Query: 168 EIGNLSALEELDLSDNKIHGIIPDELTKXXXXXXXXXXXXXXXGQIPSAIGKLFNLKYLD 227
NL+ LE LD+S NK+ I S + KL NL+ L
Sbjct: 169 --ANLTTLERLDISSNKVSDI--------------------------SVLAKLTNLESLI 200
Query: 228 LSKNKLGGSIPTEIGNCSELKNLTLNHNSLD--GTIRPEMGEILLLQNLDLSHNNLS 282
+ N++ P +G + L L+LN N L GT + + L +LDL++N +S
Sbjct: 201 ATNNQISDITP--LGILTNLDELSLNGNQLKDIGT----LASLTNLTDLDLANNQIS 251
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 59/118 (50%), Gaps = 16/118 (13%)
Query: 25 IGSLRNLEVLDLVSNNLNGTIPKEIGTLR---NLMGLHLSSNNLTGELPQEIENLKSLIR 81
+G L NL+ L +LNG K+IGTL NL L L++N ++ P + L L
Sbjct: 212 LGILTNLDEL-----SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE 264
Query: 82 LFVRNNTLGGPIP-STLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLT 138
L + N + P + L LTNLE L NQ P I +LKNLTYL + N ++
Sbjct: 265 LKLGANQISNISPLAGLTALTNLE---LNENQLEDISP--ISNLKNLTYLTLYFNNIS 317
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 25 IGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFV 84
+ L L L+L N L P I L+NL L L NN++ P + +L L RLF
Sbjct: 278 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 333
Query: 85 RNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGA 140
NN + S+L LTN+ L G NQ + P + +L +T L + T A
Sbjct: 334 SNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 385
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 111/262 (42%), Gaps = 57/262 (21%)
Query: 28 LRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLH-LSSNNLTGELPQEIENLKSLIRLFVRN 86
L NL L+L SN + +I L L L L+ N +L + + NL +L RL + +
Sbjct: 128 LTNLNRLELSSNTI-----SDISALSGLTSLQQLNFGNQVTDL-KPLANLTTLERLDISS 181
Query: 87 NTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRXXXX 146
N + S L +LTNLE L NQ + P +G L NL L + N+L
Sbjct: 182 NKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-------- 229
Query: 147 XXXXXXXXXXXXXXXXXXIPLEIGNLSA---LEELDLSDNKIHGIIP-DELTKXXXXXXX 202
+IG L++ L +LDL++N+I + P LTK
Sbjct: 230 ---------------------DIGTLASLTNLTDLDLANNQISNLAPLSGLTK------- 261
Query: 203 XXXXXXXXGQIP--SAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGT 260
QI S + L L L+L++N+L P I N L LTL N++
Sbjct: 262 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD- 318
Query: 261 IRPEMGEILLLQNLDLSHNNLS 282
I P + + LQ L S+N +S
Sbjct: 319 ISP-VSSLTKLQRLFFSNNKVS 339
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 28 LRNLEVLDLVSNNLNGTIPKEIGT-LRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRN 86
L +LEVL + N+ +I T LRNL L LS L P +L SL L + +
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 87 NTLGGPIPSTLF-RLTNLEVLYLGFNQFNGTIPR 119
N L +P +F RLT+L+ ++L N ++ + PR
Sbjct: 504 NQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 32/74 (43%)
Query: 21 IPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLI 80
+P LRNL LDL L P +L +L L+++SN L + L SL
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521
Query: 81 RLFVRNNTLGGPIP 94
++++ N P
Sbjct: 522 KIWLHTNPWDCSCP 535
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 165 IPLEIGNLSALEELDLSDNKIHGIIPDEL 193
+P NL+ LE LDLS NKI I +L
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 13/118 (11%)
Query: 28 LRNLEVLDLVSNNLNGTIPKEI-GTLRNLMGLHLSSNNLTGELPQEI-ENLKSLIRLFVR 85
L NL L+L N L ++PK + L NL L LS N L LP+ + + L L L +
Sbjct: 132 LTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLY 189
Query: 86 NNTLGGPIPSTLF-RLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIR 142
N L +P +F RLT+L+ ++L N ++ T P + YL +NK +G +R
Sbjct: 190 QNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVR 239
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 213 IPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQ 272
IPS + + +K LDLS N++ +++ C L+ L L N ++ + L+
Sbjct: 20 IPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 77
Query: 273 NLDLSHNNLSGTITKTLCPMHSDMSFNRLEGEIPSNLRDNPPKSFAGNTGLCGHVEEL 330
+LDLS+N LS + P+ S ++F L G NP K+ G T L H+ +L
Sbjct: 78 HLDLSYNYLSNLSSSWFKPL-SSLTFLNLLG--------NPYKTL-GETSLFSHLTKL 125
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 213 IPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQ 272
IPS + + +K LDLS N++ +++ C L+ L L N ++ + L+
Sbjct: 46 IPSGLTEA--VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103
Query: 273 NLDLSHNNLSGTITKTLCPMHSDMSFNRLEGEIPSNLRDNPPKSFAGNTGLCGHVEEL 330
+LDLS+N LS + P+ S ++F L G NP K+ G T L H+ +L
Sbjct: 104 HLDLSYNYLSNLSSSWFKPL-SSLTFLNLLG--------NPYKTL-GETSLFSHLTKL 151
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 8/119 (6%)
Query: 24 EIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLF 83
+ L++L L LV+N ++ K LR L L++S N+L E+P + + SL+ L
Sbjct: 73 DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPS--SLVELR 129
Query: 84 VRNNTLGGPIPSTLFR-LTNLEVLYLGFNQF--NGTIPREIGHLKNLTYLFIKVNKLTG 139
+ +N + +P +F L N+ + +G N +G P LK L YL I KLTG
Sbjct: 130 IHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTG 186
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 5/92 (5%)
Query: 29 RNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNT 88
++L L++ SN L TI + + ++ LH +N +P+++ L++L L V +N
Sbjct: 399 KSLLSLNMSSNILTDTIFRCLPPRIKVLDLH---SNKIKSIPKQVVKLEALQELNVASNQ 455
Query: 89 LGGPIPSTLF-RLTNLEVLYLGFNQFNGTIPR 119
L +P +F RLT+L+ ++L N ++ + PR
Sbjct: 456 LKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 486
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 226 LDLSKNKLGGSIPTEIGNCSELKNLTLNHNS---LDGTIRPEMGEILLLQNLDLSHNNLS 282
L++S+N + ++I + S+L+ L ++HN LD ++ E L+ LDLSHN L
Sbjct: 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQE---LEYLDLSHNKLV 82
Query: 283 G-TITKTLCPMHSDMSFNRLEG 303
+ T+ H D+SFN +
Sbjct: 83 KISCHPTVNLKHLDLSFNAFDA 104
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 60/165 (36%), Gaps = 56/165 (33%)
Query: 49 IGTLRNLMGLHLSSNNLTGELP--------------------QEIENLKSLIRLFVRNNT 88
I L NL+GL L N +T P I L+S+ L + +
Sbjct: 65 IQYLNNLIGLELKDNQITDLTPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ 124
Query: 89 LGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFI---KVNKLTGAIRXXX 145
+ P L L+NL+VLYL NQ P + L NL YL I +VN LT
Sbjct: 125 ITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVNDLT------- 173
Query: 146 XXXXXXXXXXXXXXXXXXXIPLEIGNLSALEELDLSDNKIHGIIP 190
PL NLS L L DNKI I P
Sbjct: 174 --------------------PL--ANLSKLTTLRADDNKISDISP 196
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Query: 31 LEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLG 90
L+ + SN +PK G R++ L+L N T +P+E+ N K L + + NN +
Sbjct: 11 LDTVVRCSNKGLKVLPK--GIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS 67
Query: 91 GPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLT 138
+ +T L L L +N+ PR LK+L L + N ++
Sbjct: 68 TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 21 IPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLI 80
+PKE+ + ++L ++DL +N ++ + + L+ L LS N L P+ + LKSL
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 81 RLFVRNNTLGGPIPSTLFR-LTNLEVLYLGFN 111
L + N + +P F L+ L L +G N
Sbjct: 106 LLSLHGNDISV-VPEGAFNDLSALSHLAIGAN 136
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%)
Query: 45 IPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLE 104
+PKE+ ++L + LS+N ++ Q N+ L+ L + N L P T L +L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 105 VLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKL 137
+L L N + L L++L I N L
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 43 GTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLF-RLT 101
++P I T + L+L N +T P + L L RL + NN L +P+ +F +LT
Sbjct: 22 ASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLT 78
Query: 102 NLEVLYLGFNQFNGTIPR-EIGHLKNLTYLFIKVNKLTGAI 141
L L L NQ +IPR +LK+LT++++ N A
Sbjct: 79 QLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNNPWDCAC 118
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 28 LRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEI-ENLKSLIRLFVRN 86
L NL+ L LV N L L NL L+L N L LP+ + + L +L RL + N
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQS-LPKGVFDKLTNLTRLDLDN 166
Query: 87 NTLGGPIPSTLF-RLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFI 132
N L +P +F +LT L+ L L NQ L +LT++++
Sbjct: 167 NQLQS-LPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWL 212
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 25 IGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEI-ENLKSLIRLF 83
I L N+ L L N L+ + L NL L L+ N L LP + + L +L L
Sbjct: 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELV 115
Query: 84 VRNNTLGGPIPSTLF-RLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKL 137
+ N L +P +F +LTNL LYL NQ L NLT L + N+L
Sbjct: 116 LVENQLQS-LPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQL 169
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 43 GTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLF-RLT 101
++P I T + L+L N +T P + L L RL + NN L +P+ +F +LT
Sbjct: 30 ASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLT 86
Query: 102 NLEVLYLGFNQFNGTIPR-EIGHLKNLTYLFI 132
L L L NQ +IPR +LK+LT++++
Sbjct: 87 QLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWL 117
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%)
Query: 217 IGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDL 276
+ L L+ L+LS N+L P + L+ L L H + R ++ L+ L+L
Sbjct: 174 LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNL 233
Query: 277 SHNNLSGTITKTLCPMH 293
SHNNL P+H
Sbjct: 234 SHNNLMSLPHDLFTPLH 250
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%)
Query: 217 IGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDL 276
+ L L+ L+LS N+L P + L+ L L H + R ++ L+ L+L
Sbjct: 174 LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNL 233
Query: 277 SHNNLSGTITKTLCPMH 293
SHNNL P+H
Sbjct: 234 SHNNLMSLPHDLFTPLH 250
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 43 GTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLF-RLT 101
++P I T + L+L N +T P + L L RL + NN L +P+ +F +LT
Sbjct: 22 ASVPTGIPTTTQV--LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLT 78
Query: 102 NLEVLYLGFNQFNGTIPR-EIGHLKNLTYLFIKVNKLTGAI 141
L L L NQ +IPR +L++LT++++ N A
Sbjct: 79 QLTQLSLNDNQLK-SIPRGAFDNLRSLTHIWLLNNPWDCAC 118
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 58/162 (35%), Gaps = 56/162 (34%)
Query: 52 LRNLMGLHLSSNNLTGELP--------------------QEIENLKSLIRLFVRNNTLGG 91
L NL+GL L N +T P I L+S+ L + + +
Sbjct: 62 LNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD 121
Query: 92 PIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFI---KVNKLTGAIRXXXXXX 148
P L L+NL+VLYL NQ P + L NL YL I +V+ LT
Sbjct: 122 VTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT---------- 167
Query: 149 XXXXXXXXXXXXXXXXIPLEIGNLSALEELDLSDNKIHGIIP 190
+ NLS L L DNKI I P
Sbjct: 168 -------------------PLANLSKLTTLKADDNKISDISP 190
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 43 GTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLF-RLT 101
++P I T + L L++N +T P ++L +L +L+ +N L IP+ +F +LT
Sbjct: 25 ASVPAGIPTDK--QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLT 81
Query: 102 NLEVLYLGFNQFNGTIPR-EIGHLKNLTYLFIKVNKLTGAIR 142
L L L N +IPR +LK+LT++++ N R
Sbjct: 82 QLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNNPWDCECR 122
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 26/89 (29%)
Query: 101 TNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRXXXXXXXXXXXXXXXXXX 160
T+ + L+L NQ P HL NL L+ NKLT
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA--------------------- 71
Query: 161 XXXXIPLEI-GNLSALEELDLSDNKIHGI 188
IP + L+ L +LDL+DN + I
Sbjct: 72 ----IPTGVFDKLTQLTQLDLNDNHLKSI 96
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Query: 21 IPKEIGSLRNLEVLDLVSNNLNGTIPKE--IGTLRNLMGLHLSSNNLTGELPQEIENLKS 78
IP++I L E+L +++N G I + G L +L+ L L N LTG P E
Sbjct: 23 IPRDI-PLHTTELL--LNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79
Query: 79 LIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVN 135
+ L + N + L L+ L L NQ + +P HL +LT L + N
Sbjct: 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 11/117 (9%)
Query: 28 LRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEI-ENLKSLIRLFVRN 86
L +L L+L +N L L L L L++N L LP + + L L L +
Sbjct: 75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQ 133
Query: 87 NTLGGPIPSTLF-RLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIR 142
N L +P +F RLT+L+ ++L N ++ T P + YL +NK +G +R
Sbjct: 134 NQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVR 182
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 11/96 (11%)
Query: 219 KLFNLKYLDLSKNKLGGSIPTEI-GNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLS 277
KL +L YL+LS N+L S+P + ++LK L LN N L ++ L++L L
Sbjct: 74 KLTSLTYLNLSTNQL-QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLY 132
Query: 278 HNNLSGTITKTLCPMHSDMSFNRLEGEIPSNLRDNP 313
N L D F+RL L DNP
Sbjct: 133 QNQLKSV---------PDGVFDRLTSLQYIWLHDNP 159
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%)
Query: 213 IPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQ 272
+P +L NL +LDLS+ +L PT + S L+ L ++HN+ + LQ
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 545
Query: 273 NLDLSHNNLSGTITKTLCPMHSDMSF 298
LD S N++ + + L S ++F
Sbjct: 546 VLDYSLNHIMTSKKQELQHFPSSLAF 571
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 21 IPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNL 65
+P LRNL LDL L P +L +L L++S NN
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 165 IPLEIGNLSALEELDLSDNKIHGIIPDEL 193
+P NL+ LE LDLS NKI I +L
Sbjct: 165 LPEYFSNLTNLEHLDLSSNKIQSIYCTDL 193
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%)
Query: 213 IPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQ 272
+P +L NL +LDLS+ +L PT + S L+ L ++HN+ + LQ
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 521
Query: 273 NLDLSHNNLSGTITKTLCPMHSDMSF 298
LD S N++ + + L S ++F
Sbjct: 522 VLDYSLNHIMTSKKQELQHFPSSLAF 547
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 165 IPLEIGNLSALEELDLSDNKIHGIIPDEL 193
+P NL+ LE LDLS NKI I +L
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 21 IPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNL 65
+P LRNL LDL L P +L +L L++S NN
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 94/240 (39%), Gaps = 17/240 (7%)
Query: 58 LHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTI 117
L L +N +T + +NLK+L L + NN + P L LE LYL NQ +
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115
Query: 118 PREIGHLKNLTYLFIKVNKLTGAIRXXXXXXXXXXXXXXXXXXXXXXIPLEIGNLSALEE 177
P ++ K L L + N++T +R +E G +++
Sbjct: 116 PEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 178 LD---LSDNKIHGI---IPDELTKXXXXXXXXXXXXXXXGQIPSAIGKLFNLKYLDLSKN 231
L ++D I I +P LT+ +++ L NL L LS N
Sbjct: 173 LSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDA------ASLKGLNNLAKLGLSFN 226
Query: 232 KLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTITKTLCP 291
+ + N L+ L LN+N L + + + +Q + L +NN+S + CP
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 94/240 (39%), Gaps = 17/240 (7%)
Query: 58 LHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTI 117
L L +N +T + +NLK+L L + NN + P L LE LYL NQ +
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115
Query: 118 PREIGHLKNLTYLFIKVNKLTGAIRXXXXXXXXXXXXXXXXXXXXXXIPLEIGNLSALEE 177
P ++ K L L + N++T +R +E G +++
Sbjct: 116 PEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 178 LD---LSDNKIHGI---IPDELTKXXXXXXXXXXXXXXXGQIPSAIGKLFNLKYLDLSKN 231
L ++D I I +P LT+ +++ L NL L LS N
Sbjct: 173 LSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDA------ASLKGLNNLAKLGLSFN 226
Query: 232 KLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTITKTLCP 291
+ + N L+ L LN+N L + + + +Q + L +NN+S + CP
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 7 QGQDIQPYTENTCTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLT 66
QG Q + + + + +GSL E+L L S NL + LRN+ L LS N+LT
Sbjct: 456 QGNSFQDGSISKTNLLQMVGSL---EILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLT 512
Query: 67 GELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGT 116
G+ + +LK L NN P P L L+ ++ L N + T
Sbjct: 513 GDSMDALSHLKGLYLNMASNNIRIIP-PHLLPALSQQSIINLSHNPLDCT 561
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 79/188 (42%), Gaps = 41/188 (21%)
Query: 74 ENLKSLIRLFVRNNTLGGPIPST--LFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLF 131
E L+S+ +L V G + S + LTNLE L L NQ P + +L LT L+
Sbjct: 41 EELESITKLVVA----GEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLY 94
Query: 132 IKVNKLTGAIRXXXXXXXXXXXXXXXXXXXXXXIPLEIGNLSALEELDLSDNKIHGIIP- 190
I NK+T + NL+ L EL L+++ I I P
Sbjct: 95 IGTNKITDISA--------------------------LQNLTNLRELYLNEDNISDISPL 128
Query: 191 DELTKXXXXXXXXXXXXXXXGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNL 250
LTK + + G L YL ++++K+ P I N ++L +L
Sbjct: 129 ANLTKXYSLNLGANHNLSDLSPLSNXTG----LNYLTVTESKVKDVTP--IANLTDLYSL 182
Query: 251 TLNHNSLD 258
+LN+N ++
Sbjct: 183 SLNYNQIE 190
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%)
Query: 213 IPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQ 272
+P +L NL +LDLS+ +L PT + S L+ L ++HN+ + LQ
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 226
Query: 273 NLDLSHNNLSGTITKTLCPMHSDMSF 298
LD S N++ + + L S ++F
Sbjct: 227 VLDYSLNHIMTSKKQELQHFPSSLAF 252
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 21 IPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNL 65
+P LRNL LDL L P +L +L L++S NN
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 213 IPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNH---NSLDGTIRPEMGEIL 269
IPS + +K LDLS NK+ ++ C+ L+ L L N+++G +G
Sbjct: 46 IPSGLTA--AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS-- 101
Query: 270 LLQNLDLSHNNLSGTITKTLCPMHS 294
L++LDLS N+LS + P+ S
Sbjct: 102 -LEHLDLSDNHLSSLSSSWFGPLSS 125
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 14/95 (14%)
Query: 29 RNLEVLDLVSNNLNG---TIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVR 85
+ LEVLD+ +NNL+ +P+ L L++S N L LP + L+ + +
Sbjct: 457 QTLEVLDVSNNNLDSFSLFLPR-------LQELYISRNKL-KTLP-DASLFPVLLVMKIA 507
Query: 86 NNTLGGPIPSTLF-RLTNLEVLYLGFNQFNGTIPR 119
+N L +P +F RLT+L+ ++L N ++ + PR
Sbjct: 508 SNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 541
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 213 IPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNH---NSLDGTIRPEMGEIL 269
IPS + +K LDLS NK+ ++ C+ L+ L L N+++G +G
Sbjct: 20 IPSGLTA--AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS-- 75
Query: 270 LLQNLDLSHNNLSGTITKTLCPMHS 294
L++LDLS N+LS + P+ S
Sbjct: 76 -LEHLDLSDNHLSSLSSSWFGPLSS 99
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 14/95 (14%)
Query: 29 RNLEVLDLVSNNLNG---TIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVR 85
+ LEVLD+ +NNL+ +P+ L L++S N L LP + L+ + +
Sbjct: 431 QTLEVLDVSNNNLDSFSLFLPR-------LQELYISRNKL-KTLP-DASLFPVLLVMKIS 481
Query: 86 NNTLGGPIPSTLF-RLTNLEVLYLGFNQFNGTIPR 119
N L +P +F RLT+L+ ++L N ++ + PR
Sbjct: 482 RNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 515
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 28 LRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEI-ENLKSLIRLFVRN 86
L L L+L N L L L L L++N L LP + ++L L +L++
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGG 116
Query: 87 NTLGGPIPSTLF-RLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKL 137
N L +PS +F RLT L+ L L NQ L NL L + N+L
Sbjct: 117 NQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 44/109 (40%), Gaps = 2/109 (1%)
Query: 30 NLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTL 89
+ E LDL S L L L L+L N L ++L L L + NN L
Sbjct: 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95
Query: 90 GGPIPSTLF-RLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKL 137
+P +F LT L+ LYLG NQ L L L + N+L
Sbjct: 96 A-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 48/112 (42%), Gaps = 1/112 (0%)
Query: 26 GSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVR 85
G+L L LDL N L ++P TL L L +S N LT + L L L+++
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 86 NNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKL 137
N L P L LE L L NQ + L+NL L ++ N L
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 45/118 (38%), Gaps = 2/118 (1%)
Query: 22 PKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIR 81
P L +L L L L P L L L+L NNL +L +L
Sbjct: 97 PTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTH 156
Query: 82 LFVRNNTLGGPIPSTLFR-LTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLT 138
LF+ N + +P FR L +L+ L L N P L L L++ N L+
Sbjct: 157 LFLHGNRIPS-VPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS 213
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 28 LRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEI-ENLKSLIRLFVRN 86
L L L+L N L L L L L++N L LP + ++L L +L++
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGG 116
Query: 87 NTLGGPIPSTLF-RLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKL 137
N L +PS +F RLT L+ L L NQ L NL L + N+L
Sbjct: 117 NQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 44/109 (40%), Gaps = 2/109 (1%)
Query: 30 NLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTL 89
+ E LDL S L L L L+L N L ++L L L + NN L
Sbjct: 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95
Query: 90 GGPIPSTLF-RLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKL 137
+P +F LT L+ LYLG NQ L L L + N+L
Sbjct: 96 A-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 48/112 (42%), Gaps = 1/112 (0%)
Query: 26 GSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVR 85
G+L L LDL N L ++P TL L L +S N LT + L L L+++
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 86 NNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKL 137
N L P L LE L L NQ + L+NL L ++ N L
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 60/145 (41%), Gaps = 10/145 (6%)
Query: 1 MVYQFHQGQDIQPYTENT------CTIPK--EIGSLRNLEVLDLVSNNLNGTIPKEIGTL 52
++Y F + PYT T C + K G+L L LDL N L ++P TL
Sbjct: 42 LLYTFSLAT-LMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTL 99
Query: 53 RNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQ 112
L L +S N LT + L L L+++ N L P L LE L L NQ
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQ 159
Query: 113 FNGTIPREIGHLKNLTYLFIKVNKL 137
+ L+NL L ++ N L
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 24/114 (21%)
Query: 30 NLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSL---------I 80
+LE L L N +N L +L+ L+LS N L + ENL L I
Sbjct: 300 DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI 359
Query: 81 RLFVRNNTLGGP--------------IPSTLF-RLTNLEVLYLGFNQFNGTIPR 119
R + LG P +P +F RLT+L+ ++L N ++ + PR
Sbjct: 360 RALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 60/145 (41%), Gaps = 10/145 (6%)
Query: 1 MVYQFHQGQDIQPYTENT------CTIPK--EIGSLRNLEVLDLVSNNLNGTIPKEIGTL 52
++Y F + PYT T C + K G+L L LDL N L ++P TL
Sbjct: 42 LLYTFSLAT-LMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTL 99
Query: 53 RNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQ 112
L L +S N LT + L L L+++ N L P L LE L L NQ
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQ 159
Query: 113 FNGTIPREIGHLKNLTYLFIKVNKL 137
+ L+NL L ++ N L
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENSL 184
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 5/97 (5%)
Query: 25 IGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEI-ENLKSLIRLF 83
+ +RNL L+L +N + L NL + SN L ++P+ I + L +L
Sbjct: 143 LTDMRNLSHLELRAN-IEEMPSHLFDDLENLESIEFGSNKLR-QMPRGIFGKMPKLKQLN 200
Query: 84 VRNNTLGGPIPSTLF-RLTNLEVLYLGFNQFNGTIPR 119
+ +N L +P +F RLT+L+ ++L N ++ + PR
Sbjct: 201 LASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 236
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 216 AIGKLFNLKYLDLSKNKLGGS--IPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQN 273
+ KL NL+ LDLS N + S ++ N S L+ L L+HN G E L+
Sbjct: 342 CLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLEL 401
Query: 274 LDLSHNNL 281
LDL+ L
Sbjct: 402 LDLAFTRL 409
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 101 TNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTG 139
T +VL+L NQ P L LTYL + VN+LT
Sbjct: 40 TTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTA 78
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 43 GTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLF-RLT 101
++P I T + LHL N +T P ++L L L + N L +P +F +LT
Sbjct: 32 ASVPAGIPTTTQV--LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTA-LPVGVFDKLT 88
Query: 102 NLEVLYLGFNQFNGTIPREI-GHLKNLTYLFI 132
L L L NQ +IP + +LK+LT++++
Sbjct: 89 KLTHLALHINQLK-SIPMGVFDNLKSLTHIYL 119
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 43/113 (38%), Gaps = 1/113 (0%)
Query: 27 SLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSN-NLTGELPQEIENLKSLIRLFVR 85
+ RNL +L L SN L L L L LS N L P L L L +
Sbjct: 54 ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 113
Query: 86 NNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLT 138
L P L L+ LYL N L NLT+LF+ N+++
Sbjct: 114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 43/113 (38%), Gaps = 1/113 (0%)
Query: 27 SLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSN-NLTGELPQEIENLKSLIRLFVR 85
+ RNL +L L SN L L L L LS N L P L L L +
Sbjct: 53 ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 112
Query: 86 NNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLT 138
L P L L+ LYL N L NLT+LF+ N+++
Sbjct: 113 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 165
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Query: 54 NLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGG--PIPSTLFRLTNLEVLYLGFN 111
NL LHLS N ++ P +++L L L V N L IPS L L+L N
Sbjct: 64 NLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSAC-----LSRLFLDNN 116
Query: 112 QFNGTIPREIGHLKNLTYLFIKVNKLTGAI 141
+ T + HLKNL L I+ NKL +
Sbjct: 117 ELRDT--DSLIHLKNLEILSIRNNKLKSIV 144
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 21 IPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGEL----PQEIENL 76
+P+ +L NLE LDL SN + ++ L + L+LS + + P + +
Sbjct: 142 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 201
Query: 77 KSLIRLFVRNNTLGGPIPSTLF-RLTNLEVLYLGFNQFNGTIPR 119
+ L L + N L +P +F RLT+L+ ++L N ++ + PR
Sbjct: 202 R-LKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 243
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 21 IPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGEL----PQEIENL 76
+P+ +L NLE LDL SN + ++ L + L+LS + + P + +
Sbjct: 143 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 202
Query: 77 KSLIRLFVRNNTLGGPIPSTLF-RLTNLEVLYLGFNQFNGTIPR 119
+ L L + N L +P +F RLT+L+ ++L N ++ + PR
Sbjct: 203 R-LKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 244
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 47/106 (44%), Gaps = 19/106 (17%)
Query: 22 PKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIR 81
P LRNL +LDL +NN+ + L NL L NNL R
Sbjct: 473 PSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLA--------------R 518
Query: 82 LFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNL 127
L+ R N GGP+ + L L++L +L L + NG +G KNL
Sbjct: 519 LWKRANP-GGPV-NFLKGLSHLHILNL---ESNGLDEIPVGVFKNL 559
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 21 IPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGEL----PQEIENL 76
+P+ +L NLE LDL SN + ++ L + L+LS + + P + +
Sbjct: 142 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 201
Query: 77 KSLIRLFVRNNTLGGPIPSTLF-RLTNLEVLYLGFNQFNGTIPR 119
+ L L + N L +P +F RLT+L+ ++L N ++ + PR
Sbjct: 202 R-LKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 243
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 21 IPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGEL----PQEIENL 76
+P+ +L NLE LDL SN + ++ L + L+LS + + P + +
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200
Query: 77 KSLIRLFVRNNTLGGPIPSTLF-RLTNLEVLYLGFNQFNGTIPR 119
+ L L + N L +P +F RLT+L+ ++L N ++ + PR
Sbjct: 201 R-LKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 242
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 21 IPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGEL----PQEIENL 76
+P+ +L NLE LDL SN + ++ L + L+LS + + P + +
Sbjct: 143 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 202
Query: 77 KSLIRLFVRNNTLGGPIPSTLF-RLTNLEVLYLGFNQFNGTIPR 119
+ L L + N L +P +F RLT+L+ ++L N ++ + PR
Sbjct: 203 R-LKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 244
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 30/71 (42%)
Query: 214 PSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQN 273
P KL LK L+L N+L C+ L L L NS+ + L
Sbjct: 66 PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 125
Query: 274 LDLSHNNLSGT 284
LDLSHN LS T
Sbjct: 126 LDLSHNGLSST 136
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Query: 24 EIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSS----NNLTGELPQEIENLKSL 79
+I + +L+ L+L SN + P + L GL L++ +LT +L E+ N S+
Sbjct: 166 DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN-TSI 224
Query: 80 IRLFVRNNTLGGPIPSTLF--RLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKL 137
L + N+ L +T + TNL +L L +N N L L Y F++ N +
Sbjct: 225 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 30/71 (42%)
Query: 214 PSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQN 273
P KL LK L+L N+L C+ L L L NS+ + L
Sbjct: 71 PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 130
Query: 274 LDLSHNNLSGT 284
LDLSHN LS T
Sbjct: 131 LDLSHNGLSST 141
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Query: 24 EIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSS----NNLTGELPQEIENLKSL 79
+I + +L+ L+L SN + P + L GL L++ +LT +L E+ N S+
Sbjct: 171 DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN-TSI 229
Query: 80 IRLFVRNNTLGGPIPSTLF--RLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKL 137
L + N+ L +T + TNL +L L +N N L L Y F++ N +
Sbjct: 230 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 289
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Query: 24 EIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSS----NNLTGELPQEIENLKSL 79
+I + +L+ L+L SN + P + L GL L++ +LT +L E+ N S+
Sbjct: 176 DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN-TSI 234
Query: 80 IRLFVRNNTLGGPIPSTLF--RLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKL 137
L + N+ L +T + TNL +L L +N N L L Y F++ N +
Sbjct: 235 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 294
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 30/71 (42%)
Query: 214 PSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQN 273
P KL LK L+L N+L C+ L L L NS+ + L
Sbjct: 76 PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 135
Query: 274 LDLSHNNLSGT 284
LDLSHN LS T
Sbjct: 136 LDLSHNGLSST 146
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 28 LRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEI-ENLKSLIRLFVRN 86
L L L L N + L L L+L N L LP + + L L L +
Sbjct: 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS-LPNGVFDKLTQLKELALDT 109
Query: 87 NTLGGPIPSTLF-RLTNLEVLYLGFNQFNGTIPR 119
N L +P +F RLT+L+ ++L N ++ + PR
Sbjct: 110 NQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.139 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,247,543
Number of Sequences: 62578
Number of extensions: 348716
Number of successful extensions: 1274
Number of sequences better than 100.0: 96
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 669
Number of HSP's gapped (non-prelim): 435
length of query: 350
length of database: 14,973,337
effective HSP length: 100
effective length of query: 250
effective length of database: 8,715,537
effective search space: 2178884250
effective search space used: 2178884250
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)