Query 018826
Match_columns 350
No_of_seqs 267 out of 3675
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 04:22:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018826.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018826hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 6.4E-36 1.4E-40 301.9 22.8 315 12-327 267-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.7E-35 5.9E-40 297.4 21.7 307 14-320 149-462 (968)
3 KOG4194 Membrane glycoprotein 100.0 2.7E-35 5.9E-40 260.6 0.9 341 6-348 102-464 (873)
4 KOG4194 Membrane glycoprotein 100.0 2.7E-32 5.9E-37 241.7 5.0 309 13-322 86-404 (873)
5 KOG0444 Cytoskeletal regulator 99.9 1.6E-28 3.4E-33 219.9 -4.5 295 24-325 73-377 (1255)
6 KOG4237 Extracellular matrix p 99.9 2.7E-28 6E-33 207.0 -6.7 296 20-349 60-372 (498)
7 KOG0444 Cytoskeletal regulator 99.9 2E-27 4.3E-32 212.9 -4.8 290 13-309 15-312 (1255)
8 KOG0472 Leucine-rich repeat pr 99.9 3.1E-25 6.6E-30 189.1 -8.6 109 212-323 426-541 (565)
9 PLN03210 Resistant to P. syrin 99.9 2.3E-20 5.1E-25 190.0 21.7 288 18-320 577-903 (1153)
10 KOG4237 Extracellular matrix p 99.8 1.1E-23 2.4E-28 179.3 -7.5 268 14-281 76-358 (498)
11 PLN03210 Resistant to P. syrin 99.8 2.6E-19 5.7E-24 182.4 22.5 270 16-299 599-903 (1153)
12 PRK15387 E3 ubiquitin-protein 99.8 8.3E-20 1.8E-24 174.4 14.4 253 13-309 209-465 (788)
13 KOG0472 Leucine-rich repeat pr 99.8 1.8E-23 3.9E-28 178.4 -10.4 252 20-282 59-310 (565)
14 PRK15387 E3 ubiquitin-protein 99.8 4.5E-19 9.8E-24 169.4 17.8 254 29-323 201-458 (788)
15 cd00116 LRR_RI Leucine-rich re 99.8 2.1E-20 4.5E-25 166.0 1.4 142 21-162 15-178 (319)
16 cd00116 LRR_RI Leucine-rich re 99.8 2.9E-20 6.3E-25 165.1 0.5 258 33-290 2-299 (319)
17 KOG0618 Serine/threonine phosp 99.8 6.4E-21 1.4E-25 178.0 -4.2 246 28-281 218-488 (1081)
18 KOG0618 Serine/threonine phosp 99.8 2.3E-20 5.1E-25 174.3 -3.4 286 25-322 195-488 (1081)
19 PRK15370 E3 ubiquitin-protein 99.8 7.3E-18 1.6E-22 162.0 12.5 222 31-282 180-401 (754)
20 PRK15370 E3 ubiquitin-protein 99.7 1.2E-17 2.7E-22 160.4 13.1 234 20-283 192-429 (754)
21 KOG0617 Ras suppressor protein 99.6 6E-18 1.3E-22 128.9 -5.5 163 97-265 29-192 (264)
22 KOG0617 Ras suppressor protein 99.6 3.3E-17 7.1E-22 124.9 -4.5 155 51-234 31-186 (264)
23 KOG1909 Ran GTPase-activating 99.3 3.3E-13 7.1E-18 114.2 0.7 184 99-282 90-311 (382)
24 COG4886 Leucine-rich repeat (L 99.2 2.5E-11 5.3E-16 111.1 8.3 197 81-286 97-294 (394)
25 PLN03150 hypothetical protein; 99.2 5E-11 1.1E-15 114.3 8.7 111 199-325 420-530 (623)
26 KOG1909 Ran GTPase-activating 99.2 1.9E-12 4.2E-17 109.6 -1.1 238 21-258 22-311 (382)
27 KOG0532 Leucine-rich repeat (L 99.2 7.3E-13 1.6E-17 118.8 -3.9 195 75-279 73-270 (722)
28 KOG3207 Beta-tubulin folding c 99.2 4.3E-12 9.2E-17 110.5 0.3 135 124-258 196-339 (505)
29 COG4886 Leucine-rich repeat (L 99.2 1E-10 2.2E-15 107.0 8.8 199 57-264 97-296 (394)
30 PF14580 LRR_9: Leucine-rich r 99.2 5.7E-11 1.2E-15 94.1 6.1 127 147-277 17-148 (175)
31 KOG3207 Beta-tubulin folding c 99.1 6.1E-12 1.3E-16 109.6 0.2 208 27-234 119-339 (505)
32 KOG1259 Nischarin, modulator o 99.1 9.6E-12 2.1E-16 103.5 0.7 226 27-261 180-415 (490)
33 PF14580 LRR_9: Leucine-rich r 99.1 7.9E-11 1.7E-15 93.3 5.2 125 27-156 17-147 (175)
34 KOG0532 Leucine-rich repeat (L 99.1 3.1E-12 6.8E-17 114.8 -4.1 194 53-256 75-271 (722)
35 KOG1259 Nischarin, modulator o 99.1 2.3E-11 5E-16 101.3 1.2 227 51-286 180-416 (490)
36 PLN03150 hypothetical protein; 99.1 4.2E-10 9.2E-15 108.0 9.2 108 175-282 420-528 (623)
37 KOG0531 Protein phosphatase 1, 99.0 4.6E-11 9.9E-16 109.6 -1.5 248 28-289 71-325 (414)
38 PF13855 LRR_8: Leucine rich r 99.0 3.6E-10 7.8E-15 73.8 3.2 60 222-281 2-61 (61)
39 PF13855 LRR_8: Leucine rich r 98.9 8.3E-10 1.8E-14 72.1 3.5 60 29-88 1-60 (61)
40 KOG4658 Apoptotic ATPase [Sign 98.9 1.4E-09 3.1E-14 107.0 5.1 251 27-282 543-807 (889)
41 KOG0531 Protein phosphatase 1, 98.8 6.5E-10 1.4E-14 102.1 -0.5 233 16-261 82-321 (414)
42 KOG4658 Apoptotic ATPase [Sign 98.6 3.8E-08 8.2E-13 97.1 5.5 252 28-286 522-788 (889)
43 KOG2982 Uncharacterized conser 98.6 1.1E-08 2.4E-13 85.4 1.3 229 25-253 41-287 (418)
44 COG5238 RNA1 Ran GTPase-activa 98.5 2E-08 4.4E-13 82.8 -1.0 63 196-258 213-285 (388)
45 KOG2982 Uncharacterized conser 98.4 6.3E-08 1.4E-12 81.0 0.9 231 50-282 42-290 (418)
46 KOG2120 SCF ubiquitin ligase, 98.4 6.8E-09 1.5E-13 86.7 -6.1 177 101-279 185-373 (419)
47 KOG2120 SCF ubiquitin ligase, 98.3 8.2E-09 1.8E-13 86.2 -6.7 57 31-87 187-244 (419)
48 KOG1859 Leucine-rich repeat pr 98.3 1.6E-08 3.4E-13 94.0 -6.2 127 126-258 165-292 (1096)
49 KOG1859 Leucine-rich repeat pr 98.3 1.6E-08 3.5E-13 93.9 -6.2 197 77-282 84-292 (1096)
50 COG5238 RNA1 Ran GTPase-activa 98.2 4.3E-07 9.2E-12 75.2 1.8 221 52-286 29-289 (388)
51 KOG1644 U2-associated snRNP A' 98.2 2.3E-06 5E-11 67.8 5.4 123 32-158 22-149 (233)
52 PF13306 LRR_5: Leucine rich r 98.2 5.6E-06 1.2E-10 62.9 7.5 105 24-133 7-111 (129)
53 KOG4579 Leucine-rich repeat (L 98.1 1E-07 2.2E-12 70.7 -3.7 83 198-282 54-136 (177)
54 PF13306 LRR_5: Leucine rich r 98.1 1.1E-05 2.5E-10 61.2 7.4 58 97-156 8-65 (129)
55 PF12799 LRR_4: Leucine Rich r 98.1 3.9E-06 8.4E-11 50.2 3.4 36 246-282 2-37 (44)
56 KOG1644 U2-associated snRNP A' 98.0 9.8E-06 2.1E-10 64.4 5.7 106 174-281 43-152 (233)
57 PF12799 LRR_4: Leucine Rich r 98.0 4.3E-06 9.4E-11 50.0 2.8 36 222-258 2-37 (44)
58 KOG4579 Leucine-rich repeat (L 98.0 4.5E-07 9.7E-12 67.3 -2.2 135 150-287 28-164 (177)
59 PRK15386 type III secretion pr 97.7 0.00018 3.9E-09 64.6 9.2 57 73-135 48-104 (426)
60 PRK15386 type III secretion pr 97.7 0.00038 8.2E-09 62.6 10.0 54 52-111 51-104 (426)
61 KOG3665 ZYG-1-like serine/thre 97.5 4.5E-05 9.7E-10 73.9 1.9 151 77-229 122-283 (699)
62 KOG3665 ZYG-1-like serine/thre 97.4 8.5E-05 1.8E-09 72.0 3.0 83 148-232 147-231 (699)
63 KOG2739 Leucine-rich acidic nu 97.3 0.00012 2.6E-09 60.7 1.8 68 21-90 35-104 (260)
64 KOG2123 Uncharacterized conser 96.8 4.2E-05 9E-10 63.9 -4.7 98 174-275 20-123 (388)
65 KOG4341 F-box protein containi 96.8 2.8E-05 6E-10 68.4 -6.2 137 147-283 292-441 (483)
66 KOG2739 Leucine-rich acidic nu 96.8 0.00087 1.9E-08 55.7 2.5 108 168-277 38-151 (260)
67 KOG4341 F-box protein containi 96.7 3.6E-05 7.7E-10 67.8 -6.2 250 26-275 161-458 (483)
68 KOG1947 Leucine rich repeat pr 96.7 0.00028 6E-09 66.3 -0.9 17 217-233 358-374 (482)
69 KOG1947 Leucine rich repeat pr 96.4 0.00032 6.8E-09 66.0 -2.5 78 193-280 358-438 (482)
70 KOG2123 Uncharacterized conser 95.9 0.00022 4.7E-09 59.7 -5.5 37 51-89 39-75 (388)
71 PF00560 LRR_1: Leucine Rich R 95.2 0.009 2E-07 29.6 0.9 17 271-288 2-18 (22)
72 PF00560 LRR_1: Leucine Rich R 94.8 0.016 3.5E-07 28.6 1.1 19 55-74 2-20 (22)
73 KOG3864 Uncharacterized conser 93.6 0.0092 2E-07 47.9 -1.8 81 198-278 102-185 (221)
74 KOG4308 LRR-containing protein 93.3 0.00031 6.8E-09 65.2 -12.3 89 196-284 203-305 (478)
75 PF13504 LRR_7: Leucine rich r 92.3 0.09 1.9E-06 24.1 1.2 11 247-257 3-13 (17)
76 PF13516 LRR_6: Leucine Rich r 92.1 0.029 6.3E-07 28.3 -0.7 18 269-286 2-19 (24)
77 smart00369 LRR_TYP Leucine-ric 91.0 0.24 5.2E-06 25.4 2.2 13 246-258 3-15 (26)
78 smart00370 LRR Leucine-rich re 91.0 0.24 5.2E-06 25.4 2.2 13 246-258 3-15 (26)
79 KOG4308 LRR-containing protein 90.6 0.00086 1.9E-08 62.3 -12.7 36 55-90 89-128 (478)
80 smart00370 LRR Leucine-rich re 90.0 0.32 6.9E-06 24.9 2.1 14 53-66 2-15 (26)
81 smart00369 LRR_TYP Leucine-ric 90.0 0.32 6.9E-06 24.9 2.1 14 53-66 2-15 (26)
82 KOG3864 Uncharacterized conser 89.6 0.038 8.2E-07 44.4 -2.4 84 174-257 102-188 (221)
83 KOG0473 Leucine-rich repeat pr 83.5 0.024 5.2E-07 46.6 -6.6 60 196-257 64-123 (326)
84 KOG0473 Leucine-rich repeat pr 82.9 0.018 3.8E-07 47.4 -7.5 88 192-282 37-124 (326)
85 smart00368 LRR_RI Leucine rich 82.6 0.44 9.6E-06 25.0 0.2 18 269-286 2-19 (28)
86 smart00365 LRR_SD22 Leucine-ri 76.1 2.4 5.2E-05 21.9 1.7 15 269-283 2-16 (26)
87 KOG3763 mRNA export factor TAP 73.5 1.4 3.1E-05 41.1 0.8 63 195-258 216-283 (585)
88 smart00364 LRR_BAC Leucine-ric 71.0 3.5 7.6E-05 21.2 1.5 13 246-258 3-15 (26)
89 KOG3763 mRNA export factor TAP 51.9 7.2 0.00016 36.7 1.1 64 218-283 215-284 (585)
90 smart00367 LRR_CC Leucine-rich 49.8 13 0.00028 18.8 1.4 12 245-256 2-13 (26)
91 TIGR00864 PCC polycystin catio 27.2 42 0.00091 38.4 2.2 33 227-259 1-33 (2740)
92 TIGR00864 PCC polycystin catio 21.5 61 0.0013 37.3 2.1 32 35-66 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.4e-36 Score=301.94 Aligned_cols=315 Identities=38% Similarity=0.571 Sum_probs=227.6
Q ss_pred CCCCcceecCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccC
Q 018826 12 QPYTENTCTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGG 91 (350)
Q Consensus 12 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~ 91 (350)
+.+|.+++.+|..+.++++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+
T Consensus 267 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 346 (968)
T PLN00113 267 LYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSG 346 (968)
T ss_pred CcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcC
Confidence 34556666666666666666667766666666666666666666666666666665666666666666666666666655
Q ss_pred CCCccccCCCCCcEEEccCCccccccCcc------------------------ccCCCCCCEEEcccCccccccchhhhc
Q 018826 92 PIPSTLFRLTNLEVLYLGFNQFNGTIPRE------------------------IGHLKNLTYLFIKVNKLTGAIRSTLGQ 147 (350)
Q Consensus 92 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------------------------l~~l~~L~~L~l~~n~~~~~~~~~~~~ 147 (350)
..|..+..+++|+.|++++|.+.+..|.. +..+++|+.|++++|.+....+..+..
T Consensus 347 ~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~ 426 (968)
T PLN00113 347 EIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK 426 (968)
T ss_pred cCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhc
Confidence 55555555666666666665555444444 444555555555555555444445555
Q ss_pred cCCccEEecCCCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEE
Q 018826 148 LTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLD 227 (350)
Q Consensus 148 ~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 227 (350)
++.|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+ ..++|+.|++++|.+++..|..+..+++|+.|+
T Consensus 427 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~ 505 (968)
T PLN00113 427 LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLK 505 (968)
T ss_pred CCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEE
Confidence 5566666666665555555555556666666666666665555433 346788888888888888888888999999999
Q ss_pred ccCCcccccCCccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEccccccccccCCccccccc----CCCCCccee
Q 018826 228 LSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTITKTLCPMHS----DMSFNRLEG 303 (350)
Q Consensus 228 l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p~~~~~~~~----~l~~N~l~~ 303 (350)
+++|.+.+..|..+..+++|++|++++|++++.+|..+..+++|+.|++++|++++.+|..+..... ++++|.++|
T Consensus 506 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 506 LSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred CcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 9999999889999999999999999999999999999999999999999999999999988877654 999999999
Q ss_pred cCCCCC--CCCCCcccCCCCCCcccC
Q 018826 304 EIPSNL--RDNPPKSFAGNTGLCGHV 327 (350)
Q Consensus 304 ~ip~~~--~~~~~~~~~~n~~~~~~~ 327 (350)
.+|+.- ..+...++.||+.+|+..
T Consensus 586 ~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 586 SLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred eCCCcchhcccChhhhcCCccccCCc
Confidence 999764 566778899999999864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.7e-35 Score=297.40 Aligned_cols=307 Identities=40% Similarity=0.575 Sum_probs=185.7
Q ss_pred CCcceecCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCC
Q 018826 14 YTENTCTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPI 93 (350)
Q Consensus 14 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 93 (350)
+|.+++.+|..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+..
T Consensus 149 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 228 (968)
T PLN00113 149 NNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228 (968)
T ss_pred CCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcC
Confidence 44455555555666666666666666665555555666666666666666665555666666666666666666665555
Q ss_pred CccccCCCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccCCC
Q 018826 94 PSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLS 173 (350)
Q Consensus 94 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~ 173 (350)
|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..|..+..++
T Consensus 229 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 308 (968)
T PLN00113 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ 308 (968)
T ss_pred ChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCC
Confidence 65666666666666666666655566666666666666666666555555556666666666666666555566666666
Q ss_pred CCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECC
Q 018826 174 ALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLN 253 (350)
Q Consensus 174 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~ 253 (350)
+|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..+..+++|+.|+++
T Consensus 309 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~ 388 (968)
T PLN00113 309 NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILF 388 (968)
T ss_pred CCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECc
Confidence 66666666666665555556666666666666666665666666666666666666666665555555555555555555
Q ss_pred CCcCcccCchhhcccCCCCEEEccccccccccCCccccccc----CCCCCcceecCCCCC---CCCCCcccCCC
Q 018826 254 HNSLDGTIRPEMGEILLLQNLDLSHNNLSGTITKTLCPMHS----DMSFNRLEGEIPSNL---RDNPPKSFAGN 320 (350)
Q Consensus 254 ~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p~~~~~~~~----~l~~N~l~~~ip~~~---~~~~~~~~~~n 320 (350)
+|++.+..|..+..+++|+.|++++|++++.+|..+..+.. ++++|.++|.+|..+ ..+..+.+.+|
T Consensus 389 ~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 462 (968)
T PLN00113 389 SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARN 462 (968)
T ss_pred CCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCc
Confidence 55555555555555666666666666666666655544433 555555555555432 34444444444
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-35 Score=260.61 Aligned_cols=341 Identities=23% Similarity=0.240 Sum_probs=240.2
Q ss_pred ccccccCCCCcceecCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecc
Q 018826 6 HQGQDIQPYTENTCTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVR 85 (350)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~ 85 (350)
+.++....+++.-..+|..-....+|+.|+|.+|.|+.+....++-++.|+.|||+.|.|+.+.-..|..-.++++|+|+
T Consensus 102 ~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La 181 (873)
T KOG4194|consen 102 PNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLA 181 (873)
T ss_pred CcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeec
Confidence 33333333444444444444444445555555555554444455556666666666666664444455555667777777
Q ss_pred cccccCCCCccccCCCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCc
Q 018826 86 NNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSI 165 (350)
Q Consensus 86 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 165 (350)
+|.|+......|..+.+|-.|.+++|.++...+..|..+++|+.|+|.+|.+.-+..-+|.++++|+.|.+..|.+....
T Consensus 182 ~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~ 261 (873)
T KOG4194|consen 182 SNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLD 261 (873)
T ss_pred cccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccccc
Confidence 77777666667777777777777777777666666777777777777777777655567777777777777777777666
Q ss_pred cccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCC
Q 018826 166 PLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCS 245 (350)
Q Consensus 166 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~ 245 (350)
..+|..+.++++|++..|++..+...++.+++.|+.|+++.|.|..+.++.++.+++|+.|+|+.|+|+...+..|..+.
T Consensus 262 DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~ 341 (873)
T KOG4194|consen 262 DGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS 341 (873)
T ss_pred CcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHH
Confidence 77788888888999988888877778888889999999999998888888888889999999999999877777888888
Q ss_pred CCCEEECCCCcCcccCchhhcccCCCCEEEccccccccccCCcc---ccccc----CCCCCcceecCCC----CCCCCCC
Q 018826 246 ELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTITKTL---CPMHS----DMSFNRLEGEIPS----NLRDNPP 314 (350)
Q Consensus 246 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p~~~---~~~~~----~l~~N~l~~~ip~----~~~~~~~ 314 (350)
.|++|++++|.++.....+|..+.+|++|||++|.|+..+...- ..+.+ ++-+|+|. .||. .+..+..
T Consensus 342 ~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~ 420 (873)
T KOG4194|consen 342 QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEH 420 (873)
T ss_pred HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccce
Confidence 89999999998887777788888889999999998887665432 22222 77788876 5554 3367778
Q ss_pred cccCCCCCCcccCCCC-----------ccccccccccceeeeeee
Q 018826 315 KSFAGNTGLCGHVEEL-----------PRMEMCFRCGIMVVKFYM 348 (350)
Q Consensus 315 ~~~~~n~~~~~~~~~~-----------~~~~~c~~c~~~~~~~~~ 348 (350)
+++.+|+.-......+ .+..-| -|+++|.-.|+
T Consensus 421 LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflC-DCql~Wl~qWl 464 (873)
T KOG4194|consen 421 LDLGDNAIASIQPNAFEPMELKELVMNSSSFLC-DCQLKWLAQWL 464 (873)
T ss_pred ecCCCCcceeecccccccchhhhhhhcccceEE-eccHHHHHHHH
Confidence 8888885433222111 234456 48999988886
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=2.7e-32 Score=241.67 Aligned_cols=309 Identities=22% Similarity=0.226 Sum_probs=264.1
Q ss_pred CCCcceecCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCC
Q 018826 13 PYTENTCTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGP 92 (350)
Q Consensus 13 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~ 92 (350)
.+|+++..-+..|.++++|+.+.+.+|.++ .+|.......+|+.|+|.+|.|+.+..+.+..++.|+.|+|+.|.|..+
T Consensus 86 snNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i 164 (873)
T KOG4194|consen 86 SNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEI 164 (873)
T ss_pred cccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcc
Confidence 456666666667888999999999999888 6676666667799999999988877778888889999999999988877
Q ss_pred CCccccCCCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccCC
Q 018826 93 IPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNL 172 (350)
Q Consensus 93 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~ 172 (350)
....|..-.++++|++.+|.++....+.|..+.+|..|.|++|.++......|..+++|+.|+|..|++...--..|..+
T Consensus 165 ~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL 244 (873)
T KOG4194|consen 165 PKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGL 244 (873)
T ss_pred cCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCc
Confidence 66777777899999999999998888889999999999999999998888889999999999999998864445678889
Q ss_pred CCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEEC
Q 018826 173 SALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTL 252 (350)
Q Consensus 173 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l 252 (350)
++|+.|.+..|.+.......|..+.++++|+|..|++......++-++++|+.|+++.|.|..+.++.++.+++|+.|++
T Consensus 245 ~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdL 324 (873)
T KOG4194|consen 245 PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDL 324 (873)
T ss_pred hhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEec
Confidence 99999999999998777788999999999999999998877788889999999999999999888899999999999999
Q ss_pred CCCcCcccCchhhcccCCCCEEEccccccccccCCccccccc----CCCCCcceecCCCCC------CCCCCcccCCCCC
Q 018826 253 NHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTITKTLCPMHS----DMSFNRLEGEIPSNL------RDNPPKSFAGNTG 322 (350)
Q Consensus 253 ~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p~~~~~~~~----~l~~N~l~~~ip~~~------~~~~~~~~~~n~~ 322 (350)
+.|+|+...+.+|..+..|++|+|++|.|+-.-...|..+.+ ||++|.|++.|-+.- +++..+.+.||+.
T Consensus 325 s~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNql 404 (873)
T KOG4194|consen 325 SSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQL 404 (873)
T ss_pred cccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCcee
Confidence 999999888889999999999999999998655555555544 999999997765532 6788888999954
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=1.6e-28 Score=219.87 Aligned_cols=295 Identities=31% Similarity=0.438 Sum_probs=217.5
Q ss_pred ccCCCCCcCEEEccCCcCC-CCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCC
Q 018826 24 EIGSLRNLEVLDLVSNNLN-GTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTN 102 (350)
Q Consensus 24 ~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 102 (350)
.+..+|.|+.++++.|.+. .-+|..+-.+..|+.|||++|++. ..|..+..-.++-.|++++|+|.++....|.++..
T Consensus 73 ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtD 151 (1255)
T KOG0444|consen 73 ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTD 151 (1255)
T ss_pred hhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHh
Confidence 3444555555555555443 123334445666677777777666 55666666666667777777766555455566667
Q ss_pred CcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccc-cCccccccCCCCCCEEEcc
Q 018826 103 LEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLH-SSIPLEIGNLSALEELDLS 181 (350)
Q Consensus 103 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~ 181 (350)
|-.|++++|.+. ..|.....+..|++|.+++|.+.......+..+.+|..|.+++.+-+ ..+|..+..+.+|..++++
T Consensus 152 LLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS 230 (1255)
T KOG0444|consen 152 LLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS 230 (1255)
T ss_pred Hhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence 777777777766 44556666667777777777665443333444555666666665422 3567788888899999999
Q ss_pred CCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCc-cc
Q 018826 182 DNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLD-GT 260 (350)
Q Consensus 182 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~-~~ 260 (350)
.|.+. ..|+++..+++|+.|+|++|.++. +.-..+.+.+|+.|++++|+++ .+|.+++.++.|+.|.+.+|+++ +-
T Consensus 231 ~N~Lp-~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeG 307 (1255)
T KOG0444|consen 231 ENNLP-IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEG 307 (1255)
T ss_pred ccCCC-cchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccC
Confidence 99887 678889999999999999999984 4445677889999999999999 89999999999999999999986 44
Q ss_pred CchhhcccCCCCEEEccccccccccCCccccccc----CCCCCcceecCCCCC---CCCCCcccCCCCCCcc
Q 018826 261 IRPEMGEILLLQNLDLSHNNLSGTITKTLCPMHS----DMSFNRLEGEIPSNL---RDNPPKSFAGNTGLCG 325 (350)
Q Consensus 261 ~~~~~~~~~~L~~L~l~~N~i~~~~p~~~~~~~~----~l~~N~l~~~ip~~~---~~~~~~~~~~n~~~~~ 325 (350)
+|..++.+..|+.+...+|++. ..|+.+|.+.. .|+.|.|. .+|+.+ ..+..+.+-.||.+..
T Consensus 308 iPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 308 IPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred CccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccC
Confidence 7788899999999999999886 88999988866 99999998 889988 7888899999988764
No 6
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.92 E-value=2.7e-28 Score=207.05 Aligned_cols=296 Identities=21% Similarity=0.276 Sum_probs=223.4
Q ss_pred cCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEeccc-ccccCCCCcccc
Q 018826 20 TIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRN-NTLGGPIPSTLF 98 (350)
Q Consensus 20 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~ 98 (350)
.+|..+. +....+.|..|.|+.+.+++|+.+++|++|||++|.|+.+-|++|.+++.|.+|.+.+ |+|+......|.
T Consensus 60 eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 60 EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG 137 (498)
T ss_pred cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence 5777776 6677889999999988899999999999999999999989999999999988887776 889888788899
Q ss_pred CCCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccC------------cc
Q 018826 99 RLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSS------------IP 166 (350)
Q Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~------------~~ 166 (350)
++..++.|.+.-|++..+..+.|..+++|..|.+.+|.+..+...+|..+..++.+.+..|.+... .+
T Consensus 138 gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ 217 (498)
T KOG4237|consen 138 GLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNP 217 (498)
T ss_pred hHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhch
Confidence 999999999999998877788899999999999999999887777888889999999887763211 11
Q ss_pred ccccCCCCCCEEEccCCcccccCCcccCCCCCCCEE--EC-CCCcCcccc-chhhhCCCCCCEEEccCCcccccCCcccc
Q 018826 167 LEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNL--NI-SSNLLSGQI-PSAIGKLFNLKYLDLSKNKLGGSIPTEIG 242 (350)
Q Consensus 167 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L--~l-~~n~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~~~~~ 242 (350)
..++...-.....+...++..+.+..+... ++.+ .+ +.+...+.- ...|..+++|+.|++++|+++++-+.+|.
T Consensus 218 ietsgarc~~p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe 295 (498)
T KOG4237|consen 218 IETSGARCVSPYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE 295 (498)
T ss_pred hhcccceecchHHHHHHHhcccchhhhhhh--HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhc
Confidence 111111111222222223332222222221 2222 11 222233233 34688999999999999999988889999
Q ss_pred CCCCCCEEECCCCcCcccCchhhcccCCCCEEEccccccccccCCcccccccCCCCCcceecCCCCCCCCCCcccCCCCC
Q 018826 243 NCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTITKTLCPMHSDMSFNRLEGEIPSNLRDNPPKSFAGNTG 322 (350)
Q Consensus 243 ~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p~~~~~~~~~l~~N~l~~~ip~~~~~~~~~~~~~n~~ 322 (350)
+...++.|.+.+|++...-...|.++..|+.|+|.+|+|+...|..|... .++..+.+.+||+
T Consensus 296 ~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~-----------------~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 296 GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTL-----------------FSLSTLNLLSNPF 358 (498)
T ss_pred chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccc-----------------ceeeeeehccCcc
Confidence 99999999999999987666788999999999999999987776555332 3556677889988
Q ss_pred CcccCCCCccccccccccceeeeeeec
Q 018826 323 LCGHVEELPRMEMCFRCGIMVVKFYMK 349 (350)
Q Consensus 323 ~~~~~~~~~~~~~c~~c~~~~~~~~~~ 349 (350)
.|. |.+.|...|++
T Consensus 359 ~Cn-------------C~l~wl~~Wlr 372 (498)
T KOG4237|consen 359 NCN-------------CRLAWLGEWLR 372 (498)
T ss_pred cCc-------------cchHHHHHHHh
Confidence 884 88888888876
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=2e-27 Score=212.86 Aligned_cols=290 Identities=30% Similarity=0.476 Sum_probs=194.2
Q ss_pred CCCccee-cCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccC
Q 018826 13 PYTENTC-TIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGG 91 (350)
Q Consensus 13 ~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~ 91 (350)
.+|-++| ..|.....|+.++.|.|....+. ..|+.++.+.+|+.|.+++|++. .+...+..++.|+.+.+..|++..
T Consensus 15 sgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKn 92 (1255)
T KOG0444|consen 15 SGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKN 92 (1255)
T ss_pred cCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhcccccc
Confidence 4566774 67778888888888888888776 56777777888888888888776 334456677788888888777642
Q ss_pred C-CCccccCCCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCcccccc
Q 018826 92 P-IPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIG 170 (350)
Q Consensus 92 ~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~ 170 (350)
. +|..++.+..|..|++++|++. +.|..+..-.++-.|++++|+|..+....+.++..|-.|++++|++. .+|....
T Consensus 93 sGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~R 170 (1255)
T KOG0444|consen 93 SGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIR 170 (1255)
T ss_pred CCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHH
Confidence 2 4555667788888888888877 56767777777778888888887776667777777777888877775 5566666
Q ss_pred CCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCc-cccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCE
Q 018826 171 NLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLS-GQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKN 249 (350)
Q Consensus 171 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~ 249 (350)
.+..|++|.+++|.+....-..+..+++|+.|.+++.+-+ ..+|..+..+.+|..+|++.|.+. ..|+.+..+++|+.
T Consensus 171 RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~Lrr 249 (1255)
T KOG0444|consen 171 RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRR 249 (1255)
T ss_pred HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhhe
Confidence 7777777777777766554445555566666666665433 235556666666666666666666 66666666666666
Q ss_pred EECCCCcCcccCchhhcccCCCCEEEccccccccccCCccccccc----CCCCCccee-cCCCCC
Q 018826 250 LTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTITKTLCPMHS----DMSFNRLEG-EIPSNL 309 (350)
Q Consensus 250 L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p~~~~~~~~----~l~~N~l~~-~ip~~~ 309 (350)
|++++|+|+. .........+|++|+++.|+++ ..|.+.|.... .+.+|+|+. -||+.+
T Consensus 250 LNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGI 312 (1255)
T KOG0444|consen 250 LNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGI 312 (1255)
T ss_pred eccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccch
Confidence 6666666663 3334444556666666666665 55666665544 444555442 345444
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.87 E-value=3.1e-25 Score=189.09 Aligned_cols=109 Identities=28% Similarity=0.409 Sum_probs=85.9
Q ss_pred ccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEccccccccccCCcccc
Q 018826 212 QIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTITKTLCP 291 (350)
Q Consensus 212 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p~~~~~ 291 (350)
..|..+..+++|..|++++|.+. .+|..++.+-.|+.|+++.|++. .+|...-....++.+-.++|++....|..+..
T Consensus 426 fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~n 503 (565)
T KOG0472|consen 426 FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKN 503 (565)
T ss_pred cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhh
Confidence 55666677888999999988888 67777777888999999999888 56777666667777778888888766665666
Q ss_pred ccc----CCCCCcceecCCCCC---CCCCCcccCCCCCC
Q 018826 292 MHS----DMSFNRLEGEIPSNL---RDNPPKSFAGNTGL 323 (350)
Q Consensus 292 ~~~----~l~~N~l~~~ip~~~---~~~~~~~~~~n~~~ 323 (350)
+.. |+.+|.|. .||..+ .++..+.++|||..
T Consensus 504 m~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 504 MRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 654 88999998 888877 67778889999754
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=2.3e-20 Score=190.03 Aligned_cols=288 Identities=24% Similarity=0.274 Sum_probs=165.4
Q ss_pred eecCCcccCCCC-CcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCcc
Q 018826 18 TCTIPKEIGSLR-NLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPST 96 (350)
Q Consensus 18 ~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 96 (350)
...+|..|..+| +|+.|.+.++.+. .+|..+ ...+|+.|++.++.+. .++..+..+++|+.|+++++......|.
T Consensus 577 ~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~- 652 (1153)
T PLN03210 577 RWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD- 652 (1153)
T ss_pred eeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-
Confidence 345666666554 4777777777665 344444 4577777887777776 4555566777788888776654434443
Q ss_pred ccCCCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCC
Q 018826 97 LFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALE 176 (350)
Q Consensus 97 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 176 (350)
+..+++|++|++.+|......|..+..+++|+.|++++|......+..+ .+++|+.|++++|......|.. ..+|+
T Consensus 653 ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~ 728 (1153)
T PLN03210 653 LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNIS 728 (1153)
T ss_pred cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcC
Confidence 6667778888877765555666677777777777777654322222222 5667777777776543333322 34566
Q ss_pred EEEccCCcccccCCccc------------------------------CCCCCCCEEECCCCcCccccchhhhCCCCCCEE
Q 018826 177 ELDLSDNKIHGIIPDEL------------------------------TKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYL 226 (350)
Q Consensus 177 ~L~l~~n~~~~~~~~~~------------------------------~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 226 (350)
.|++.+|.+... |..+ ..+++|+.|++++|.....+|..++.+++|+.|
T Consensus 729 ~L~L~~n~i~~l-P~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L 807 (1153)
T PLN03210 729 WLDLDETAIEEF-PSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHL 807 (1153)
T ss_pred eeecCCCccccc-cccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEE
Confidence 666666665432 2111 112456666666665544566666666666666
Q ss_pred EccCCcccccCCccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEccccccccccCCccccccc----CCCC-Ccc
Q 018826 227 DLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTITKTLCPMHS----DMSF-NRL 301 (350)
Q Consensus 227 ~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p~~~~~~~~----~l~~-N~l 301 (350)
++++|...+.+|... .+++|+.|++++|.....+|.. ..+|+.|++++|.|+ .+|..+..+.. ++++ |++
T Consensus 808 ~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L 882 (1153)
T PLN03210 808 EIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNL 882 (1153)
T ss_pred ECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCc
Confidence 666654332444433 4566666666666443233321 245667777777665 45554443332 5554 355
Q ss_pred eecCCCCC---CCCCCcccCCC
Q 018826 302 EGEIPSNL---RDNPPKSFAGN 320 (350)
Q Consensus 302 ~~~ip~~~---~~~~~~~~~~n 320 (350)
+ .+|... ..+..+.+.++
T Consensus 883 ~-~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 883 Q-RVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred C-ccCcccccccCCCeeecCCC
Confidence 5 344443 33344444444
No 10
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.84 E-value=1.1e-23 Score=179.26 Aligned_cols=268 Identities=22% Similarity=0.208 Sum_probs=189.8
Q ss_pred CCcceecCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccC-CcCCCCcchhccCCCCCcEEecccccccCC
Q 018826 14 YTENTCTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSS-NNLTGELPQEIENLKSLIRLFVRNNTLGGP 92 (350)
Q Consensus 14 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~ 92 (350)
.|.++...+.+|+.+++|+.|||++|.|+.+.|++|++++.|.+|.+.+ |+|++...+.|.++..|+.|.+.-|.+..+
T Consensus 76 qN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Ci 155 (498)
T KOG4237|consen 76 QNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCI 155 (498)
T ss_pred cCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcch
Confidence 4777777778999999999999999999999999999999998888766 899987778899999999999999998888
Q ss_pred CCccccCCCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccc------------cchhhhccCCccEEecCCCc
Q 018826 93 IPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGA------------IRSTLGQLTSLLQLDLSSNQ 160 (350)
Q Consensus 93 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~------------~~~~~~~~~~L~~L~l~~n~ 160 (350)
..++|..++++..|.+..|.+..+...+|..+..++.+.+..|.+... .+..++++.-.....+...+
T Consensus 156 r~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~R 235 (498)
T KOG4237|consen 156 RQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKR 235 (498)
T ss_pred hHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHH
Confidence 888999999999999999999866666888899999998887763211 01111222222222222222
Q ss_pred cccCccccccCC-CCCCEEEccCCcccccC-CcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCC
Q 018826 161 LHSSIPLEIGNL-SALEELDLSDNKIHGII-PDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIP 238 (350)
Q Consensus 161 ~~~~~~~~l~~~-~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 238 (350)
+....+..+... .++.+--.+.+...++. ...|..+++|++|++++|.++++-+.+|.....++.|.|.+|++.....
T Consensus 236 i~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~ 315 (498)
T KOG4237|consen 236 INQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSS 315 (498)
T ss_pred hcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHH
Confidence 222222222211 11111111112222222 2456777777788888877777777777777777777777777775555
Q ss_pred ccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEcccccc
Q 018826 239 TEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNL 281 (350)
Q Consensus 239 ~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i 281 (350)
..|.++..|++|++.+|+|+...|.+|....+|.+|++-.|.+
T Consensus 316 ~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 316 GMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred HhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 6677777777788888887777777777777777777777655
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=2.6e-19 Score=182.40 Aligned_cols=270 Identities=21% Similarity=0.247 Sum_probs=184.8
Q ss_pred cceecCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCc
Q 018826 16 ENTCTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPS 95 (350)
Q Consensus 16 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 95 (350)
.-...+|..| .+.+|+.|++.++.+. ..+..+..+++|+.|+++++.....+|. +..+++|++|++.+|......|.
T Consensus 599 ~~l~~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~ 675 (1153)
T PLN03210 599 YPLRCMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPS 675 (1153)
T ss_pred CCCCCCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccch
Confidence 3345566665 4577888888888776 3455567788888888877654334453 66777888888887765556677
Q ss_pred cccCCCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccc--------
Q 018826 96 TLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPL-------- 167 (350)
Q Consensus 96 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-------- 167 (350)
.+..+++|+.|++.+|......|..+ .+++|+.|++++|......+. ...+|+.|+++++.+. ..|.
T Consensus 676 si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~-~lP~~~~l~~L~ 750 (1153)
T PLN03210 676 SIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIE-EFPSNLRLENLD 750 (1153)
T ss_pred hhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccc-cccccccccccc
Confidence 77777888888887764433444433 567777777776643322221 1234555555555543 1221
Q ss_pred ----------------------cccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCE
Q 018826 168 ----------------------EIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKY 225 (350)
Q Consensus 168 ----------------------~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 225 (350)
.....++|+.|++++|......|..+..+++|+.|++++|...+.+|... .+++|+.
T Consensus 751 ~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~ 829 (1153)
T PLN03210 751 ELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLES 829 (1153)
T ss_pred cccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCE
Confidence 11224678999999987666778889999999999999986544667655 6899999
Q ss_pred EEccCCcccccCCccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEcccc-ccccccCCccccccc----CCCCC
Q 018826 226 LDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHN-NLSGTITKTLCPMHS----DMSFN 299 (350)
Q Consensus 226 L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N-~i~~~~p~~~~~~~~----~l~~N 299 (350)
|++++|.....+|.. ..+|+.|++++|.++ .+|..+..+++|+.|++++| ++. .+|.....+.. +++++
T Consensus 830 L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 830 LDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred EECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCC
Confidence 999998755455543 368999999999998 57788899999999999997 555 46655544433 55554
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=8.3e-20 Score=174.40 Aligned_cols=253 Identities=30% Similarity=0.329 Sum_probs=163.2
Q ss_pred CCCcceecCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCC
Q 018826 13 PYTENTCTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGP 92 (350)
Q Consensus 13 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~ 92 (350)
..+.++ .+|..+. ++|+.|++.+|.++. +|. ..++|++|++++|+++. +|. ..++|+.|++.+|.+..
T Consensus 209 s~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~---lp~sL~~L~Ls~N~L~~- 276 (788)
T PRK15387 209 GESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH- 276 (788)
T ss_pred CCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccC---cccccceeeccCCchhh-
Confidence 345555 5777665 478888888888874 333 25788888888888873 443 24578888888887763
Q ss_pred CCccccCCCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccCC
Q 018826 93 IPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNL 172 (350)
Q Consensus 93 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~ 172 (350)
+|.. ..+|+.|++.+|+++.. |. ..++|+.|++++|.+..... ....|+.|.+++|.+.. +|.. .
T Consensus 277 Lp~l---p~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~Lp~----lp~~L~~L~Ls~N~L~~-LP~l---p 341 (788)
T PRK15387 277 LPAL---PSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTS-LPTL---P 341 (788)
T ss_pred hhhc---hhhcCEEECcCCccccc-cc---cccccceeECCCCccccCCC----CcccccccccccCcccc-cccc---c
Confidence 3322 25677888888887743 32 24678888888887775421 12457777777777753 3321 2
Q ss_pred CCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEEC
Q 018826 173 SALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTL 252 (350)
Q Consensus 173 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l 252 (350)
.+|+.|++++|.+++. |. ..++|+.|++++|.+.. +|.. ..+|+.|++++|.++ .+|.. .++|+.|++
T Consensus 342 ~~Lq~LdLS~N~Ls~L-P~---lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdL 409 (788)
T PRK15387 342 SGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMV 409 (788)
T ss_pred cccceEecCCCccCCC-CC---CCcccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCc---ccCCCEEEc
Confidence 4677888888877743 32 13467777777777763 4432 346777777777777 34432 256777777
Q ss_pred CCCcCcccCchhhcccCCCCEEEccccccccccCCccccccc----CCCCCcceecCCCCC
Q 018826 253 NHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTITKTLCPMHS----DMSFNRLEGEIPSNL 309 (350)
Q Consensus 253 ~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p~~~~~~~~----~l~~N~l~~~ip~~~ 309 (350)
++|++++ +|.. ..+|+.|++++|+|+ .+|..++.+.. ++++|.|+|.+|..+
T Consensus 410 S~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 410 SGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred cCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 7777774 3432 245677777777776 56666655543 777777777766654
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.82 E-value=1.8e-23 Score=178.36 Aligned_cols=252 Identities=34% Similarity=0.502 Sum_probs=202.4
Q ss_pred cCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccC
Q 018826 20 TIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFR 99 (350)
Q Consensus 20 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 99 (350)
.+-..+.++..++++++.+|.+. ..|.++..+..++.++.+.|+++ .+|+....+..|+.+++++|.+. ..++.++.
T Consensus 59 ~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~ 135 (565)
T KOG0472|consen 59 VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGR 135 (565)
T ss_pred hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHH
Confidence 34455667788888888888877 56667778888888888888887 67777888888888888888887 45566777
Q ss_pred CCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEE
Q 018826 100 LTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELD 179 (350)
Q Consensus 100 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~ 179 (350)
+..++.++..+|++. ..|+++..+.++..+++.+|.+....+..+. +..|++++...|.+. .+|..++.+.+|+.|+
T Consensus 136 ~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~Ly 212 (565)
T KOG0472|consen 136 LLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLY 212 (565)
T ss_pred Hhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHH
Confidence 888888888888888 5567788888888888888888877666555 888889998888775 7788888888888999
Q ss_pred ccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcc
Q 018826 180 LSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDG 259 (350)
Q Consensus 180 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~ 259 (350)
+..|.+. ..| .|.+++.|++++++.|++.-.......+++++..||+..|+++ ..|+.++-+.+|++||+++|.|+
T Consensus 213 L~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is- 288 (565)
T KOG0472|consen 213 LRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS- 288 (565)
T ss_pred hhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-
Confidence 9999887 445 6888888999999999887333344458888999999999998 78888888888999999999998
Q ss_pred cCchhhcccCCCCEEEccccccc
Q 018826 260 TIRPEMGEILLLQNLDLSHNNLS 282 (350)
Q Consensus 260 ~~~~~~~~~~~L~~L~l~~N~i~ 282 (350)
..|..++++ .|+.|-+.+|.+.
T Consensus 289 ~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 289 SLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred cCCcccccc-eeeehhhcCCchH
Confidence 466788887 8888888888774
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.82 E-value=4.5e-19 Score=169.41 Aligned_cols=254 Identities=28% Similarity=0.305 Sum_probs=194.8
Q ss_pred CCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcEEEc
Q 018826 29 RNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYL 108 (350)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 108 (350)
..-..|+++.+.++ .+|+.+. ++|+.|++++|+++. +|. .+++|++|++++|.++.. |.. .++|+.|++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsL-P~l---p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSL-PVL---PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcc-cCc---ccccceeec
Confidence 44568999999998 4566554 589999999999984 553 358999999999998844 432 468999999
Q ss_pred cCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCccccc
Q 018826 109 GFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGI 188 (350)
Q Consensus 109 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 188 (350)
.+|.+.. ++.. .++|+.|++++|.+..... .+++|+.|++++|.+.. +|.. ...|+.|++++|.++++
T Consensus 270 s~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~L 337 (788)
T PRK15387 270 FSNPLTH-LPAL---PSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTSL 337 (788)
T ss_pred cCCchhh-hhhc---hhhcCEEECcCCccccccc----cccccceeECCCCcccc-CCCC---cccccccccccCccccc
Confidence 9999874 3332 3678899999999885532 35789999999999874 4432 34688999999998753
Q ss_pred CCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccCchhhccc
Q 018826 189 IPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEI 268 (350)
Q Consensus 189 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~ 268 (350)
|. ...+|+.|++++|.+++ +|.. .++|+.|++++|.++ .+|.. ..+|+.|++++|++++ +|.. .
T Consensus 338 -P~---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~ 401 (788)
T PRK15387 338 -PT---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---P 401 (788)
T ss_pred -cc---cccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc---c
Confidence 32 22589999999999984 4542 468999999999998 45643 3689999999999995 4433 3
Q ss_pred CCCCEEEccccccccccCCccccccc-CCCCCcceecCCCCC---CCCCCcccCCCCCC
Q 018826 269 LLLQNLDLSHNNLSGTITKTLCPMHS-DMSFNRLEGEIPSNL---RDNPPKSFAGNTGL 323 (350)
Q Consensus 269 ~~L~~L~l~~N~i~~~~p~~~~~~~~-~l~~N~l~~~ip~~~---~~~~~~~~~~n~~~ 323 (350)
++|+.|++++|++++ +|..+..+.. ++++|+|+ .+|+.+ ..+..+.+.+|+.-
T Consensus 402 s~L~~LdLS~N~Lss-IP~l~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 402 SELKELMVSGNRLTS-LPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred cCCCEEEccCCcCCC-CCcchhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence 689999999999985 6655444443 99999999 899877 57778899999654
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.79 E-value=2.1e-20 Score=166.03 Aligned_cols=142 Identities=26% Similarity=0.282 Sum_probs=62.9
Q ss_pred CCcccCCCCCcCEEEccCCcCCCC----CCcccCCCCCCCEEEccCCcCCC------CcchhccCCCCCcEEeccccccc
Q 018826 21 IPKEIGSLRNLEVLDLVSNNLNGT----IPKEIGTLRNLMGLHLSSNNLTG------ELPQEIENLKSLIRLFVRNNTLG 90 (350)
Q Consensus 21 ~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~i~~------~~~~~~~~l~~L~~L~l~~n~~~ 90 (350)
....+..++.|+.++++++.++.. ++..+...+.+++++++++.+.. ..+..+..+++|++|++++|.+.
T Consensus 15 ~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 15 ATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG 94 (319)
T ss_pred hHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence 334444555566666666655321 22233445556666665554441 12233444555555555555554
Q ss_pred CCCCccccCCCC---CcEEEccCCcccc----ccCccccCC-CCCCEEEcccCccccc----cchhhhccCCccEEecCC
Q 018826 91 GPIPSTLFRLTN---LEVLYLGFNQFNG----TIPREIGHL-KNLTYLFIKVNKLTGA----IRSTLGQLTSLLQLDLSS 158 (350)
Q Consensus 91 ~~~~~~~~~l~~---L~~L~l~~n~l~~----~~~~~l~~l-~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~ 158 (350)
...+..+..+.+ |++|++++|.+.+ .....+..+ ++|++|++++|.+... ....+..+++|+.|++++
T Consensus 95 ~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~ 174 (319)
T cd00116 95 PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN 174 (319)
T ss_pred hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcC
Confidence 333233322222 5555555554441 111122333 4555555555544421 111233334455555544
Q ss_pred Cccc
Q 018826 159 NQLH 162 (350)
Q Consensus 159 n~~~ 162 (350)
|.+.
T Consensus 175 n~l~ 178 (319)
T cd00116 175 NGIG 178 (319)
T ss_pred CCCc
Confidence 4443
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.78 E-value=2.9e-20 Score=165.12 Aligned_cols=258 Identities=24% Similarity=0.268 Sum_probs=184.0
Q ss_pred EEEccCCcCCC-CCCcccCCCCCCCEEEccCCcCCCC----cchhccCCCCCcEEecccccccC------CCCccccCCC
Q 018826 33 VLDLVSNNLNG-TIPKEIGTLRNLMGLHLSSNNLTGE----LPQEIENLKSLIRLFVRNNTLGG------PIPSTLFRLT 101 (350)
Q Consensus 33 ~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~----~~~~~~~l~~L~~L~l~~n~~~~------~~~~~~~~l~ 101 (350)
.|+|..+.+++ .....+..++.|+.++++++.++.. ++..+...++++++.++++.+.+ ..+..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 46677777662 3334456778899999999988542 44556677889999999887652 1234566788
Q ss_pred CCcEEEccCCccccccCccccCCC---CCCEEEcccCccccc----cchhhhcc-CCccEEecCCCccccC----ccccc
Q 018826 102 NLEVLYLGFNQFNGTIPREIGHLK---NLTYLFIKVNKLTGA----IRSTLGQL-TSLLQLDLSSNQLHSS----IPLEI 169 (350)
Q Consensus 102 ~L~~L~l~~n~l~~~~~~~l~~l~---~L~~L~l~~n~~~~~----~~~~~~~~-~~L~~L~l~~n~~~~~----~~~~l 169 (350)
+|+.|++++|.+....+..+..+. +|++|++++|.+... ....+..+ ++|+.|++++|.+.+. ....+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 999999999988754444454444 499999999988742 22344556 8899999999988732 33456
Q ss_pred cCCCCCCEEEccCCccccc----CCcccCCCCCCCEEECCCCcCccc----cchhhhCCCCCCEEEccCCcccccCCccc
Q 018826 170 GNLSALEELDLSDNKIHGI----IPDELTKLSQLKNLNISSNLLSGQ----IPSAIGKLFNLKYLDLSKNKLGGSIPTEI 241 (350)
Q Consensus 170 ~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~i~~~~~~~~ 241 (350)
..+..|+.|++++|.+++. .+..+...++|+.|++++|.+++. ....+..+++|++|++++|.+++.....+
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 6677899999999988742 223345567999999999988643 33455678899999999999885322222
Q ss_pred c-----CCCCCCEEECCCCcCccc----CchhhcccCCCCEEEccccccccccCCccc
Q 018826 242 G-----NCSELKNLTLNHNSLDGT----IRPEMGEILLLQNLDLSHNNLSGTITKTLC 290 (350)
Q Consensus 242 ~-----~~~~L~~L~l~~n~i~~~----~~~~~~~~~~L~~L~l~~N~i~~~~p~~~~ 290 (350)
. ..+.|+.|++++|.++.. ....+..+++|+.+++++|.++......+.
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~ 299 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLA 299 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHH
Confidence 1 247999999999999722 233456668899999999999876544443
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.77 E-value=6.4e-21 Score=178.03 Aligned_cols=246 Identities=31% Similarity=0.334 Sum_probs=173.3
Q ss_pred CCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcEEE
Q 018826 28 LRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLY 107 (350)
Q Consensus 28 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 107 (350)
-++++.|+.+.|.++.... -..-.+|++++++.+.++ ..|+....+.+|+.+.+.+|.+. ..|..+....+|+.|.
T Consensus 218 g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~ 293 (1081)
T KOG0618|consen 218 GPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLS 293 (1081)
T ss_pred CcchheeeeccCcceeecc--ccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHH
Confidence 3556666666666552211 112345777777777776 34466667777777777777664 4445555566666666
Q ss_pred ccCCccccccCccccCCCCCCEEEcccCccccccchh-------------------------hhccCCccEEecCCCccc
Q 018826 108 LGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRST-------------------------LGQLTSLLQLDLSSNQLH 162 (350)
Q Consensus 108 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~-------------------------~~~~~~L~~L~l~~n~~~ 162 (350)
+..|.+.. +|.....+..|++|++..|++....... =...+.|+.|.+.+|.++
T Consensus 294 ~~~nel~y-ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Lt 372 (1081)
T KOG0618|consen 294 AAYNELEY-IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLT 372 (1081)
T ss_pred hhhhhhhh-CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccc
Confidence 66666653 3444555666666666666554322111 112345778888888888
Q ss_pred cCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCcccc
Q 018826 163 SSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIG 242 (350)
Q Consensus 163 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~ 242 (350)
+.....+.++..|+.|++++|++..+....+.++..|++|+|+||.++ .+|.....++.|++|...+|++. ..| .+.
T Consensus 373 d~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~ 449 (1081)
T KOG0618|consen 373 DSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELA 449 (1081)
T ss_pred ccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhh
Confidence 877777888999999999999998777778888999999999999998 67788899999999999999998 777 577
Q ss_pred CCCCCCEEECCCCcCcccCchhhcccCCCCEEEcccccc
Q 018826 243 NCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNL 281 (350)
Q Consensus 243 ~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i 281 (350)
.++.|+.+|++.|+++...-......++|++||+++|.-
T Consensus 450 ~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 450 QLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 889999999999999854433333338899999999963
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.76 E-value=2.3e-20 Score=174.31 Aligned_cols=286 Identities=28% Similarity=0.299 Sum_probs=172.2
Q ss_pred cCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCc
Q 018826 25 IGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLE 104 (350)
Q Consensus 25 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 104 (350)
+.++++|+++....|.+... -..-++|+.|+.+.|.+....+. + -..+|++++++.|.+. ..|+....+++|+
T Consensus 195 ls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~~-p-~p~nl~~~dis~n~l~-~lp~wi~~~~nle 267 (1081)
T KOG0618|consen 195 LSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDVH-P-VPLNLQYLDISHNNLS-NLPEWIGACANLE 267 (1081)
T ss_pred hhhccchhhhhhhhcccceE----EecCcchheeeeccCcceeeccc-c-ccccceeeecchhhhh-cchHHHHhcccce
Confidence 44567777777777766522 22458899999999988743332 1 2357999999999998 4558889999999
Q ss_pred EEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccCCCC-CCEEEccCC
Q 018826 105 VLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSA-LEELDLSDN 183 (350)
Q Consensus 105 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~-L~~L~l~~n 183 (350)
.+...+|.+. ..+.......+|+.|....|.++.+. ....+...|++|++..|.+....+..+..... ++.+..+.+
T Consensus 268 ~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip-~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n 345 (1081)
T KOG0618|consen 268 ALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIP-PFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSN 345 (1081)
T ss_pred EecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCC-CcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhc
Confidence 9999999996 66777788899999999999888553 44567889999999999986433322222222 444444444
Q ss_pred cccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccCch
Q 018826 184 KIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRP 263 (350)
Q Consensus 184 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~ 263 (350)
.+.......=...+.|+.|++.+|.+++..-..+.++++|+.|+|++|++.......+..++.|+.|+++||+++ .+|.
T Consensus 346 ~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~ 424 (1081)
T KOG0618|consen 346 KLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPD 424 (1081)
T ss_pred cccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhH
Confidence 443221111112334555555555555444444555555555555555555222223444555555555555555 3445
Q ss_pred hhcccCCCCEEEccccccccccCCccccccc----CCCCCccee-cCCCCC--CCCCCcccCCCCC
Q 018826 264 EMGEILLLQNLDLSHNNLSGTITKTLCPMHS----DMSFNRLEG-EIPSNL--RDNPPKSFAGNTG 322 (350)
Q Consensus 264 ~~~~~~~L~~L~l~~N~i~~~~p~~~~~~~~----~l~~N~l~~-~ip~~~--~~~~~~~~~~n~~ 322 (350)
.+..++.|++|...+|+|. ..| .+..... |+|.|+|+- .+|... +.++++++.||++
T Consensus 425 tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 425 TVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred HHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 5555555555555555554 233 2222222 555555542 233322 4555666666653
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=7.3e-18 Score=161.98 Aligned_cols=222 Identities=26% Similarity=0.433 Sum_probs=90.5
Q ss_pred cCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcEEEccC
Q 018826 31 LEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGF 110 (350)
Q Consensus 31 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 110 (350)
.+.|++++..++. +|..+ .+.|+.|++++|.++ .+|..+. ++|++|++++|.+.. +|..+. ++|+.|++++
T Consensus 180 ~~~L~L~~~~Lts-LP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 180 KTELRLKILGLTT-IPACI--PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMELSI 250 (754)
T ss_pred ceEEEeCCCCcCc-CCccc--ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCcccc-CChhhh--ccccEEECcC
Confidence 3444554444442 22222 134555555555554 2232221 345555555554442 222221 2455555555
Q ss_pred CccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCcccccCC
Q 018826 111 NQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIP 190 (350)
Q Consensus 111 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 190 (350)
|.+. .+|..+. .+|+.|++++|.+... +..+ .++|+.|++++|.+.. +|..+. ++|+.|++++|.++.. |
T Consensus 251 N~L~-~LP~~l~--s~L~~L~Ls~N~L~~L-P~~l--~~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~L-P 320 (754)
T PRK15370 251 NRIT-ELPERLP--SALQSLDLFHNKISCL-PENL--PEELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTAL-P 320 (754)
T ss_pred CccC-cCChhHh--CCCCEEECcCCccCcc-cccc--CCCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccC-C
Confidence 5444 2232221 2445555555544422 1111 1245555555554432 222211 2344455555544421 2
Q ss_pred cccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccCchhhcccCC
Q 018826 191 DELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILL 270 (350)
Q Consensus 191 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ 270 (350)
..+ .++|+.|++++|.+++ +|..+ +++|+.|++++|+++ .+|..+. ++|+.|++++|+++. +|..+. ..
T Consensus 321 ~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~s 389 (754)
T PRK15370 321 ETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP--AA 389 (754)
T ss_pred ccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--HH
Confidence 111 1344555555554442 23222 234555555555544 3333221 345555555555542 222222 23
Q ss_pred CCEEEccccccc
Q 018826 271 LQNLDLSHNNLS 282 (350)
Q Consensus 271 L~~L~l~~N~i~ 282 (350)
|+.|++++|+++
T Consensus 390 L~~LdLs~N~L~ 401 (754)
T PRK15370 390 LQIMQASRNNLV 401 (754)
T ss_pred HHHHhhccCCcc
Confidence 444555555444
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.74 E-value=1.2e-17 Score=160.37 Aligned_cols=234 Identities=24% Similarity=0.399 Sum_probs=179.1
Q ss_pred cCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccC
Q 018826 20 TIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFR 99 (350)
Q Consensus 20 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 99 (350)
.+|..+. ++|+.|++++|.++.. |..+ .++|+.|++++|.++ .+|..+. ++|+.|++++|.+. .+|..+.
T Consensus 192 sLP~~Ip--~~L~~L~Ls~N~LtsL-P~~l--~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~- 261 (754)
T PRK15370 192 TIPACIP--EQITTLILDNNELKSL-PENL--QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP- 261 (754)
T ss_pred cCCcccc--cCCcEEEecCCCCCcC-Chhh--ccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh-
Confidence 4566554 5799999999999854 4433 358999999999998 4565443 47999999999988 4555443
Q ss_pred CCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEE
Q 018826 100 LTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELD 179 (350)
Q Consensus 100 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~ 179 (350)
.+|+.|++++|.+.. +|..+. ++|+.|++++|.+..... .+ .++|+.|++++|.+.. +|..+ .++|+.|+
T Consensus 262 -s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~LP~-~l--p~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~ 331 (754)
T PRK15370 262 -SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRTLPA-HL--PSGITHLNVQSNSLTA-LPETL--PPGLKTLE 331 (754)
T ss_pred -CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccccCcc-cc--hhhHHHHHhcCCcccc-CCccc--cccceecc
Confidence 589999999999984 555443 589999999999886432 22 2478999999999874 44433 36899999
Q ss_pred ccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcc
Q 018826 180 LSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDG 259 (350)
Q Consensus 180 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~ 259 (350)
+++|.++. .|..+. ++|+.|++++|.++ .+|..+ .++|+.|++++|.++ .+|..+. ..|+.|++++|+++.
T Consensus 332 Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~ 402 (754)
T PRK15370 332 AGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVR 402 (754)
T ss_pred ccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCccc
Confidence 99999885 444443 68999999999998 456555 468999999999998 5665554 479999999999984
Q ss_pred cCchhh----cccCCCCEEEcccccccc
Q 018826 260 TIRPEM----GEILLLQNLDLSHNNLSG 283 (350)
Q Consensus 260 ~~~~~~----~~~~~L~~L~l~~N~i~~ 283 (350)
+|..+ ...+.+..+++.+|+++.
T Consensus 403 -LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 403 -LPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred -CchhHHHHhhcCCCccEEEeeCCCccH
Confidence 44443 334788999999999874
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=6e-18 Score=128.86 Aligned_cols=163 Identities=33% Similarity=0.572 Sum_probs=119.1
Q ss_pred ccCCCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCC
Q 018826 97 LFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALE 176 (350)
Q Consensus 97 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 176 (350)
+.++..+..|.+++|+++ ..|..++.+.+|+.|++..|.+... +..++.+++|+.|++.-|++. ..|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~l-p~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEEL-PTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhhc-Chhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 344556666666666666 3444566666677777766666643 345666777777777777765 7788888888888
Q ss_pred EEEccCCcccc-cCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCC
Q 018826 177 ELDLSDNKIHG-IIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHN 255 (350)
Q Consensus 177 ~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n 255 (350)
.|+++.|.+.. ..|..|..+..|+.|++++|.+. .+|...+.+++|+.|.+..|.+- ..|..++.+..|+.|++.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 88888887754 45667777788888888888887 77777888888888888888877 67777888888888888888
Q ss_pred cCcccCchhh
Q 018826 256 SLDGTIRPEM 265 (350)
Q Consensus 256 ~i~~~~~~~~ 265 (350)
+++ .+|+.+
T Consensus 184 rl~-vlppel 192 (264)
T KOG0617|consen 184 RLT-VLPPEL 192 (264)
T ss_pred eee-ecChhh
Confidence 888 444443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.58 E-value=3.3e-17 Score=124.87 Aligned_cols=155 Identities=32% Similarity=0.532 Sum_probs=88.1
Q ss_pred CCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcEEEccCCccccccCccccCCCCCCEE
Q 018826 51 TLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYL 130 (350)
Q Consensus 51 ~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 130 (350)
++.+.+.|.+++|+++ .+|..++.+.+|+.|++.+|++. ..|..++.+++|+.|++.-|.+. ..|..|+.+|.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 4566666667777666 44445666667777777776665 44555666777777776666665 556666666766666
Q ss_pred EcccCcccc-ccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcC
Q 018826 131 FIKVNKLTG-AIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLL 209 (350)
Q Consensus 131 ~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 209 (350)
+++.|++.. ..++.|..+..|+.|.+++|. +. ..|..++.+++|+-|.+..|.+
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dnd------------------------fe-~lp~dvg~lt~lqil~lrdndl 162 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDND------------------------FE-ILPPDVGKLTNLQILSLRDNDL 162 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCC------------------------cc-cCChhhhhhcceeEEeeccCch
Confidence 666665543 233334444444444444444 43 3344444555555555555544
Q ss_pred ccccchhhhCCCCCCEEEccCCccc
Q 018826 210 SGQIPSAIGKLFNLKYLDLSKNKLG 234 (350)
Q Consensus 210 ~~~~~~~~~~~~~L~~L~l~~n~i~ 234 (350)
- ..|..++.+..|+.|++.+|.++
T Consensus 163 l-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 163 L-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred h-hCcHHHHHHHHHHHHhcccceee
Confidence 4 34444555555555555555555
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.31 E-value=3.3e-13 Score=114.18 Aligned_cols=184 Identities=21% Similarity=0.245 Sum_probs=108.4
Q ss_pred CCCCCcEEEccCCccccccCcc----ccCCCCCCEEEcccCccccccchh-------------hhccCCccEEecCCCcc
Q 018826 99 RLTNLEVLYLGFNQFNGTIPRE----IGHLKNLTYLFIKVNKLTGAIRST-------------LGQLTSLLQLDLSSNQL 161 (350)
Q Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~l~~n~~~~~~~~~-------------~~~~~~L~~L~l~~n~~ 161 (350)
.+|+|+.++|+.|.+....+.. +.++..|++|.|.+|.+....-.. ....++|+.+....|++
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 3445555555555544222221 234455555555555544322111 22345677777777665
Q ss_pred ccC----ccccccCCCCCCEEEccCCccccc----CCcccCCCCCCCEEECCCCcCccc----cchhhhCCCCCCEEEcc
Q 018826 162 HSS----IPLEIGNLSALEELDLSDNKIHGI----IPDELTKLSQLKNLNISSNLLSGQ----IPSAIGKLFNLKYLDLS 229 (350)
Q Consensus 162 ~~~----~~~~l~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~ 229 (350)
... +...+...+.|+.+.++.|.|... ....+..+++|+.|++.+|.++.. +...+..+++|+.|+++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 432 234455567777777777766432 234566778888888888877632 34456677788888888
Q ss_pred CCcccccCCccc-----cCCCCCCEEECCCCcCccc----CchhhcccCCCCEEEccccccc
Q 018826 230 KNKLGGSIPTEI-----GNCSELKNLTLNHNSLDGT----IRPEMGEILLLQNLDLSHNNLS 282 (350)
Q Consensus 230 ~n~i~~~~~~~~-----~~~~~L~~L~l~~n~i~~~----~~~~~~~~~~L~~L~l~~N~i~ 282 (350)
.|.+......++ ...|.|++|.+.+|.|+.. +..+....+.|+.|++++|.+.
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 888765433222 2357888888888888632 2223344677888888888883
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.23 E-value=2.5e-11 Score=111.07 Aligned_cols=197 Identities=41% Similarity=0.536 Sum_probs=108.7
Q ss_pred EEecccccccCCCCccccCCCCCcEEEccCCccccccCccccCCC-CCCEEEcccCccccccchhhhccCCccEEecCCC
Q 018826 81 RLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLK-NLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSN 159 (350)
Q Consensus 81 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 159 (350)
.+.+..+.+... ......++.++.+++..+.++.. +....... +|+.|++++|.+.... ..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccccC-ccccccchhhcccccccccchhhhh-hhhhccccccccccCCc
Confidence 345555544211 12233345566666666666532 32333332 6666666666665431 34455666666666666
Q ss_pred ccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCc
Q 018826 160 QLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPT 239 (350)
Q Consensus 160 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~ 239 (350)
.+. ..+......+.++.|++++|.+.. .+.....+..|+++.+++|.+. ..+..+..+.++..+.+.+|++. ..+.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~ 249 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE 249 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence 665 333333355666666666666653 2333334445666777666433 23444566666666666666665 3345
Q ss_pred cccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEccccccccccC
Q 018826 240 EIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTIT 286 (350)
Q Consensus 240 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p 286 (350)
.+..++++++|++++|+++.... +....+++.+++++|.+....|
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hhccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence 55566667777777777764332 5566667777777766654444
No 25
>PLN03150 hypothetical protein; Provisional
Probab=99.19 E-value=5e-11 Score=114.33 Aligned_cols=111 Identities=34% Similarity=0.591 Sum_probs=72.4
Q ss_pred CCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEccc
Q 018826 199 LKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSH 278 (350)
Q Consensus 199 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~ 278 (350)
++.|+|++|.+.+..|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 55666677766666666666667777777777777666666666667777777777777666666666667777777777
Q ss_pred cccccccCCcccccccCCCCCcceecCCCCCCCCCCcccCCCCCCcc
Q 018826 279 NNLSGTITKTLCPMHSDMSFNRLEGEIPSNLRDNPPKSFAGNTGLCG 325 (350)
Q Consensus 279 N~i~~~~p~~~~~~~~~l~~N~l~~~ip~~~~~~~~~~~~~n~~~~~ 325 (350)
|+++|.+|..+.... .....+++.+|+.+|+
T Consensus 500 N~l~g~iP~~l~~~~----------------~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 500 NSLSGRVPAALGGRL----------------LHRASFNFTDNAGLCG 530 (623)
T ss_pred CcccccCChHHhhcc----------------ccCceEEecCCccccC
Confidence 766666665443211 1223456777777776
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.19 E-value=1.9e-12 Score=109.57 Aligned_cols=238 Identities=24% Similarity=0.323 Sum_probs=173.2
Q ss_pred CCcccCCCCCcCEEEccCCcCCCC----CCcccCCCCCCCEEEccCCc---CCCCcch-------hccCCCCCcEEeccc
Q 018826 21 IPKEIGSLRNLEVLDLVSNNLNGT----IPKEIGTLRNLMGLHLSSNN---LTGELPQ-------EIENLKSLIRLFVRN 86 (350)
Q Consensus 21 ~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~---i~~~~~~-------~~~~l~~L~~L~l~~ 86 (350)
+-.....+..++.+++++|.+... +...+.+.+.|+..++++-- ....+|+ ++..++.|++++|++
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 334455678899999999988643 23345677889998887631 2223333 455778999999999
Q ss_pred ccccCCCCcc----ccCCCCCcEEEccCCccccccC-------------ccccCCCCCCEEEcccCcccccc----chhh
Q 018826 87 NTLGGPIPST----LFRLTNLEVLYLGFNQFNGTIP-------------REIGHLKNLTYLFIKVNKLTGAI----RSTL 145 (350)
Q Consensus 87 n~~~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~-------------~~l~~l~~L~~L~l~~n~~~~~~----~~~~ 145 (350)
|.+....+.. +..+..|++|.+.+|.+...-. .....-++|+.+..++|++.... ...|
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~ 181 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAF 181 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHH
Confidence 9887554443 3457899999999998762211 12244589999999999887543 3456
Q ss_pred hccCCccEEecCCCccccC----ccccccCCCCCCEEEccCCccccc----CCcccCCCCCCCEEECCCCcCccccchhh
Q 018826 146 GQLTSLLQLDLSSNQLHSS----IPLEIGNLSALEELDLSDNKIHGI----IPDELTKLSQLKNLNISSNLLSGQIPSAI 217 (350)
Q Consensus 146 ~~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 217 (350)
...+.|+.+.+..|.+... ....+..++.|+.|++.+|-++.. ....+...++|+.|++++|.+......++
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~ 261 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAF 261 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHH
Confidence 7789999999999987542 345678899999999999988643 34566777899999999998875433333
Q ss_pred -----hCCCCCCEEEccCCccccc----CCccccCCCCCCEEECCCCcCc
Q 018826 218 -----GKLFNLKYLDLSKNKLGGS----IPTEIGNCSELKNLTLNHNSLD 258 (350)
Q Consensus 218 -----~~~~~L~~L~l~~n~i~~~----~~~~~~~~~~L~~L~l~~n~i~ 258 (350)
...|+|+.|.+.+|.|+.. +.......|.|+.|++++|.+.
T Consensus 262 ~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 3478999999999999842 2223344799999999999993
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.18 E-value=7.3e-13 Score=118.76 Aligned_cols=195 Identities=31% Similarity=0.458 Sum_probs=125.4
Q ss_pred CCCCCcEEecccccccCCCCccccCCCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEE
Q 018826 75 NLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQL 154 (350)
Q Consensus 75 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 154 (350)
.+..-...+++.|++. .+|..+..+..|+.+.+.+|.+. .++..+..+..|++++++.|.++.. +..++.++ |+.|
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~l-p~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHL-PDGLCDLP-LKVL 148 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcC-ChhhhcCc-ceeE
Confidence 3444556677777766 45555566667777777777776 5566777777777777777777643 33444544 6777
Q ss_pred ecCCCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCccc
Q 018826 155 DLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLG 234 (350)
Q Consensus 155 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~ 234 (350)
.+++|+++ ..|..++..+.|..|+.+.|.+. ..+..+.++.+|+.|.+..|.+. .+|..+. .-.|..||++.|+++
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis 224 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS 224 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee
Confidence 77777765 56666666667777777777766 34455667777777777777766 4455555 335667777777777
Q ss_pred ccCCccccCCCCCCEEECCCCcCcccCchhhcc---cCCCCEEEcccc
Q 018826 235 GSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGE---ILLLQNLDLSHN 279 (350)
Q Consensus 235 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~---~~~L~~L~l~~N 279 (350)
.+|-.|..+..|++|-|.+|.++ .+|..+.. .-=.++|+...+
T Consensus 225 -~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 225 -YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred -ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 66767777777777777777776 34443322 122456666655
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=4.3e-12 Score=110.50 Aligned_cols=135 Identities=26% Similarity=0.297 Sum_probs=56.3
Q ss_pred CCCCCEEEcccCcccccc-chhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCcccccC-CcccCCCCCCCE
Q 018826 124 LKNLTYLFIKVNKLTGAI-RSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGII-PDELTKLSQLKN 201 (350)
Q Consensus 124 l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~ 201 (350)
++.|+.|.++.|.++.-. ......+|+|..|.++.|............++.|++|++++|.+.+.. -...+.++.|+.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 344455555555444211 112234455555555444211111112222344555555555443221 122344455555
Q ss_pred EECCCCcCccc-cchh-----hhCCCCCCEEEccCCcccc-cCCccccCCCCCCEEECCCCcCc
Q 018826 202 LNISSNLLSGQ-IPSA-----IGKLFNLKYLDLSKNKLGG-SIPTEIGNCSELKNLTLNHNSLD 258 (350)
Q Consensus 202 L~l~~n~~~~~-~~~~-----~~~~~~L~~L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~i~ 258 (350)
|+++.+++.+. .|+. ...+++|++|++..|+|.+ .....+..+++|+.|.+..|.++
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 55555554432 1111 1334555666666555532 11122333455555555555554
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.16 E-value=1e-10 Score=107.03 Aligned_cols=199 Identities=36% Similarity=0.504 Sum_probs=150.9
Q ss_pred EEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCC-CCcEEEccCCccccccCccccCCCCCCEEEcccC
Q 018826 57 GLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLT-NLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVN 135 (350)
Q Consensus 57 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 135 (350)
.+++..+.+.... .....++.++.|.+.+|.+..+. ....... +|+.|++.+|.+. ..+..+..+++|+.|+++.|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~i~-~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIP-PLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccccCc-cccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 5777777764222 23445678999999999988544 4345553 8999999999988 44456788999999999999
Q ss_pred ccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccch
Q 018826 136 KLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPS 215 (350)
Q Consensus 136 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 215 (350)
.+..... .....+.|+.|++++|.+. .+|........|+++.+++|.+. ..+..+....++..+.+.+|++. ..+.
T Consensus 174 ~l~~l~~-~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~ 249 (394)
T COG4886 174 DLSDLPK-LLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE 249 (394)
T ss_pred hhhhhhh-hhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence 9886532 2237888999999999987 55555455566999999999543 24456788888888999999887 4466
Q ss_pred hhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccCchh
Q 018826 216 AIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPE 264 (350)
Q Consensus 216 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~ 264 (350)
.++.+++++.|++++|.++.. +. +....+++.|++++|.++...+..
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred hhccccccceecccccccccc-cc-ccccCccCEEeccCccccccchhh
Confidence 788889999999999999844 33 778899999999999998655543
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.16 E-value=5.7e-11 Score=94.13 Aligned_cols=127 Identities=30% Similarity=0.345 Sum_probs=45.7
Q ss_pred ccCCccEEecCCCccccCcccccc-CCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCE
Q 018826 147 QLTSLLQLDLSSNQLHSSIPLEIG-NLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKY 225 (350)
Q Consensus 147 ~~~~L~~L~l~~n~~~~~~~~~l~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 225 (350)
+..+++.|++.+|.+... +.+. .+.+|+.|++++|.++.. +.+..++.|+.|++++|.++...+.....+++|+.
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 344566777777766532 2333 356777788888877754 24666778888888888887443322245788888
Q ss_pred EEccCCccccc-CCccccCCCCCCEEECCCCcCcccCc---hhhcccCCCCEEEcc
Q 018826 226 LDLSKNKLGGS-IPTEIGNCSELKNLTLNHNSLDGTIR---PEMGEILLLQNLDLS 277 (350)
Q Consensus 226 L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~i~~~~~---~~~~~~~~L~~L~l~ 277 (350)
|++++|+|.+. ....+..+++|+.|++.+|.++.... ..+..+|+|+.||-.
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 88888888642 22455667888888888888874321 235567888888743
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=6.1e-12 Score=109.56 Aligned_cols=208 Identities=27% Similarity=0.302 Sum_probs=102.4
Q ss_pred CCCCcCEEEccCCcCCCCCC-cccCCCCCCCEEEccCCcCCCC--cchhccCCCCCcEEecccccccCCCCc-cccCCCC
Q 018826 27 SLRNLEVLDLVSNNLNGTIP-KEIGTLRNLMGLHLSSNNLTGE--LPQEIENLKSLIRLFVRNNTLGGPIPS-TLFRLTN 102 (350)
Q Consensus 27 ~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~ 102 (350)
++.+|+.+.+.+..+..... .....|++++.|||+.|-+..- +-.....+|+|+.|+++.|.+...... .-..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 45566666666655542211 2334566666666666654421 112233556666666666655421111 1113456
Q ss_pred CcEEEccCCccccc-cCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCc-cccccCCCCCCEEEc
Q 018826 103 LEVLYLGFNQFNGT-IPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSI-PLEIGNLSALEELDL 180 (350)
Q Consensus 103 L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l 180 (350)
|+.|.+++|.++.. +...+..+|+|+.|.+..|...........-+..|+.|+|++|.+.+.. -...+.++.|+.|.+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 66666666665521 1123345666666666666422222223334455666666666554221 123455566666666
Q ss_pred cCCcccccC-Ccc-----cCCCCCCCEEECCCCcCccc-cchhhhCCCCCCEEEccCCccc
Q 018826 181 SDNKIHGII-PDE-----LTKLSQLKNLNISSNLLSGQ-IPSAIGKLFNLKYLDLSKNKLG 234 (350)
Q Consensus 181 ~~n~~~~~~-~~~-----~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~i~ 234 (350)
+.+++.++. ++. ...+++|++|++..|++.+. .-..+..+++|+.|.+..|.++
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 666655432 111 23455666666666665311 1122344455666666666554
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.13 E-value=9.6e-12 Score=103.51 Aligned_cols=226 Identities=25% Similarity=0.272 Sum_probs=146.7
Q ss_pred CCCCcCEEEccCCc--C------CCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCcccc
Q 018826 27 SLRNLEVLDLVSNN--L------NGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLF 98 (350)
Q Consensus 27 ~l~~L~~L~l~~~~--~------~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 98 (350)
-+..|+.|..+... + ...++-.+.-+++|+.+.++.+.-..+. +-...-|.|+++...+..+. ..+ .+-
T Consensus 180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~-~~~~~kptl~t~~v~~s~~~-~~~-~l~ 256 (490)
T KOG1259|consen 180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIV-DIELLKPTLQTICVHNTTIQ-DVP-SLL 256 (490)
T ss_pred hhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhhee-ceeecCchhheeeeeccccc-ccc-ccc
Confidence 34567777665432 1 1112222345677888888877544222 11223477888888776554 222 222
Q ss_pred CCCCCcEEEccCC-ccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCCE
Q 018826 99 RLTNLEVLYLGFN-QFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEE 177 (350)
Q Consensus 99 ~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 177 (350)
....+.......- ..+|..-.....+..|+++++++|.++.+ ..+..-.|+++.|++++|.+... ..+..+++|+.
T Consensus 257 pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~ 333 (490)
T KOG1259|consen 257 PETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQL 333 (490)
T ss_pred chhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhh-hhhhhhccceeEEeccccceeee--hhhhhcccceE
Confidence 2333332222211 11222222334456788999999988854 35667789999999999998643 34788899999
Q ss_pred EEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCccccc-CCccccCCCCCCEEECCCCc
Q 018826 178 LDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGS-IPTEIGNCSELKNLTLNHNS 256 (350)
Q Consensus 178 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~ 256 (350)
|++++|.++.. ..+-..+-++++|.+++|.+... +.++.+-+|..||+++|+|... ....++.+|-|+.+.+.+|.
T Consensus 334 LDLS~N~Ls~~-~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 334 LDLSGNLLAEC-VGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred eecccchhHhh-hhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 99999987743 33445667899999999988733 4567788899999999999742 33467889999999999999
Q ss_pred CcccC
Q 018826 257 LDGTI 261 (350)
Q Consensus 257 i~~~~ 261 (350)
+.+..
T Consensus 411 l~~~v 415 (490)
T KOG1259|consen 411 LAGSV 415 (490)
T ss_pred ccccc
Confidence 98543
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.12 E-value=7.9e-11 Score=93.32 Aligned_cols=125 Identities=28% Similarity=0.295 Sum_probs=35.1
Q ss_pred CCCCcCEEEccCCcCCCCCCcccC-CCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccc-cCCCCCc
Q 018826 27 SLRNLEVLDLVSNNLNGTIPKEIG-TLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTL-FRLTNLE 104 (350)
Q Consensus 27 ~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~ 104 (350)
+..+++.|+|+++.++.+ +.+. .+.+|+.|++++|.++.. +.+..++.|++|++++|.++...+ .+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~-~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISE-GLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CH-HHHHH-TT--
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcccc-chHHhCCcCC
Confidence 334566666666666533 1233 456666666666666633 235556666666666666654322 22 2456666
Q ss_pred EEEccCCcccccc-CccccCCCCCCEEEcccCcccccc---chhhhccCCccEEec
Q 018826 105 VLYLGFNQFNGTI-PREIGHLKNLTYLFIKVNKLTGAI---RSTLGQLTSLLQLDL 156 (350)
Q Consensus 105 ~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~---~~~~~~~~~L~~L~l 156 (350)
+|++.+|++.... -..+..+++|+.|++.+|.+.... ...+..+|+|+.|+-
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 6666666665321 134455666666666666554321 122344555555553
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.09 E-value=3.1e-12 Score=114.78 Aligned_cols=194 Identities=32% Similarity=0.495 Sum_probs=114.4
Q ss_pred CCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcEEEccCCccccccCccccCCCCCCEEEc
Q 018826 53 RNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFI 132 (350)
Q Consensus 53 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 132 (350)
..-...|++.|++. .+|..+..+..|+.+.+..|.+. .+|....++..|.+++++.|++. ..|..+..+| |+.|.+
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEE
Confidence 33445666666666 55555566666666666666665 45555666666777777766666 4455555554 566666
Q ss_pred ccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccc
Q 018826 133 KVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQ 212 (350)
Q Consensus 133 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 212 (350)
++|++.... ..+...++|..|+.+.|.+. .+|..++...+|+.|.+..|.+.. .|..+..+ .|..||++.|.+. .
T Consensus 151 sNNkl~~lp-~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~L-pLi~lDfScNkis-~ 225 (722)
T KOG0532|consen 151 SNNKLTSLP-EEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSL-PLIRLDFSCNKIS-Y 225 (722)
T ss_pred ecCccccCC-cccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCC-ceeeeecccCcee-e
Confidence 666666432 33445666666777666664 455556666666666666666653 33344433 4666777777666 5
Q ss_pred cchhhhCCCCCCEEEccCCcccccCCccccC---CCCCCEEECCCCc
Q 018826 213 IPSAIGKLFNLKYLDLSKNKLGGSIPTEIGN---CSELKNLTLNHNS 256 (350)
Q Consensus 213 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~---~~~L~~L~l~~n~ 256 (350)
+|-.|..++.|++|.|.+|.+. ..|..++- ..-.++|+...|+
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred cchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 5666667777777777777665 33332221 1223455555553
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.09 E-value=2.3e-11 Score=101.30 Aligned_cols=227 Identities=22% Similarity=0.242 Sum_probs=153.0
Q ss_pred CCCCCCEEEccCCcC--------CCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcEEEccCCccccccCcccc
Q 018826 51 TLRNLMGLHLSSNNL--------TGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIG 122 (350)
Q Consensus 51 ~l~~L~~L~l~~~~i--------~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 122 (350)
-+..|.+|..++..- ....|..+.-+.+|+.+.++.+.-..+. +.-..-|.|+++.+....+... ..+.
T Consensus 180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~-~~~~~kptl~t~~v~~s~~~~~--~~l~ 256 (490)
T KOG1259|consen 180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIV-DIELLKPTLQTICVHNTTIQDV--PSLL 256 (490)
T ss_pred hhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhhee-ceeecCchhheeeeeccccccc--cccc
Confidence 467788888875421 1223434445678888888877543222 2222347899998877655421 2232
Q ss_pred CCCCCCEEEcccCcc-ccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCE
Q 018826 123 HLKNLTYLFIKVNKL-TGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKN 201 (350)
Q Consensus 123 ~l~~L~~L~l~~n~~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 201 (350)
....+.......-.. .+..........-|+.+++++|.+. .+.....-.|.++.|+++.|++..+.. +..+++|+.
T Consensus 257 pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~ 333 (490)
T KOG1259|consen 257 PETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQL 333 (490)
T ss_pred chhhhcCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh--hhhcccceE
Confidence 223332222211111 1111112233456899999999987 566677778999999999999986543 888999999
Q ss_pred EECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccCc-hhhcccCCCCEEEccccc
Q 018826 202 LNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIR-PEMGEILLLQNLDLSHNN 280 (350)
Q Consensus 202 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~~L~~L~l~~N~ 280 (350)
|++++|.++ ....+-..+-+++.|.+++|.|.+. ..+..+.+|+.|++++|+|..... ..++++|-|+.+.+.+|.
T Consensus 334 LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 334 LDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred eecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 999999887 4445556778999999999999733 346677899999999999974322 357889999999999999
Q ss_pred cccccC
Q 018826 281 LSGTIT 286 (350)
Q Consensus 281 i~~~~p 286 (350)
+.+...
T Consensus 411 l~~~vd 416 (490)
T KOG1259|consen 411 LAGSVD 416 (490)
T ss_pred ccccch
Confidence 985443
No 36
>PLN03150 hypothetical protein; Provisional
Probab=99.07 E-value=4.2e-10 Score=108.03 Aligned_cols=108 Identities=34% Similarity=0.646 Sum_probs=98.6
Q ss_pred CCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCC
Q 018826 175 LEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNH 254 (350)
Q Consensus 175 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~ 254 (350)
++.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 77899999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCcccCchhhccc-CCCCEEEccccccc
Q 018826 255 NSLDGTIRPEMGEI-LLLQNLDLSHNNLS 282 (350)
Q Consensus 255 n~i~~~~~~~~~~~-~~L~~L~l~~N~i~ 282 (350)
|++++.+|..+... .++..+++.+|...
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccc
Confidence 99999999887653 46778899988643
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.98 E-value=4.6e-11 Score=109.64 Aligned_cols=248 Identities=28% Similarity=0.307 Sum_probs=151.9
Q ss_pred CCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcEEE
Q 018826 28 LRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLY 107 (350)
Q Consensus 28 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 107 (350)
+..++.+.++.+.+.. ....+..+.+|+.+++.+|.+.... ..+..+++|++|++++|.|+.+. .+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc-cchhhhhcchheecccccccccc--chhhccchhhhe
Confidence 4445555566665553 2233556777778888877776332 22556777888888888776543 345666788888
Q ss_pred ccCCccccccCccccCCCCCCEEEcccCccccccc-hhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCccc
Q 018826 108 LGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIR-STLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIH 186 (350)
Q Consensus 108 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 186 (350)
+.+|.+... ..+..++.|+.+++++|.+..... . ...+.+++.+.+.+|.+... ..+.....+..+++..|.+.
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccce
Confidence 888877643 345557777777887777765533 1 35667777777777766422 22333344444566666665
Q ss_pred ccCCcccCCCCC--CCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCccc---C
Q 018826 187 GIIPDELTKLSQ--LKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGT---I 261 (350)
Q Consensus 187 ~~~~~~~~~~~~--L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~---~ 261 (350)
...+ +..... |+.+++.+|++. ..+..+..+..+..|++.+|.+... ..+...+.+..+....+++... .
T Consensus 222 ~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (414)
T KOG0531|consen 222 KLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAIS 296 (414)
T ss_pred eccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhh
Confidence 3321 222232 788888888877 3334566677888888888887632 2234456677777777776522 1
Q ss_pred ch-hhcccCCCCEEEccccccccccCCcc
Q 018826 262 RP-EMGEILLLQNLDLSHNNLSGTITKTL 289 (350)
Q Consensus 262 ~~-~~~~~~~L~~L~l~~N~i~~~~p~~~ 289 (350)
.. .....+.++.+.+..|.+....+...
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (414)
T KOG0531|consen 297 QEYITSAAPTLVTLTLELNPIRKISSLDL 325 (414)
T ss_pred ccccccccccccccccccCcccccccccH
Confidence 11 13445677888888887776555333
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.98 E-value=3.6e-10 Score=73.78 Aligned_cols=60 Identities=40% Similarity=0.515 Sum_probs=34.6
Q ss_pred CCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEcccccc
Q 018826 222 NLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNL 281 (350)
Q Consensus 222 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i 281 (350)
+|++|++++|+++...+..|..+++|++|++++|+++...+.+|..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455566666655544445555566666666666666555555555666666666666543
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.93 E-value=8.3e-10 Score=72.06 Aligned_cols=60 Identities=43% Similarity=0.517 Sum_probs=37.7
Q ss_pred CCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEeccccc
Q 018826 29 RNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNT 88 (350)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~ 88 (350)
|+|++|++++|.++...++.|.++++|++|++++|.+....+..|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 456666666666665555566666666666666666665555566666666666666654
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.89 E-value=1.4e-09 Score=106.99 Aligned_cols=251 Identities=23% Similarity=0.208 Sum_probs=138.4
Q ss_pred CCCCcCEEEccCCc--CCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCc
Q 018826 27 SLRNLEVLDLVSNN--LNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLE 104 (350)
Q Consensus 27 ~l~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 104 (350)
.+++|++|-+..+. +.....+.|..+|.|..||+++|.-.+.+|...+++-+|++|++++..+. .+|..+.++.+|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence 34568888777774 45455566778888888888887666678888888888888888888876 6677788888888
Q ss_pred EEEccCCccccccCccccCCCCCCEEEcccCccc--cccchhhhccCCccEEecCCCccccCccccccCCCCCC----EE
Q 018826 105 VLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLT--GAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALE----EL 178 (350)
Q Consensus 105 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~--~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~----~L 178 (350)
+|++..+.-....+.....+++|++|.+...... ......+..+.+|+.+....... .....+..+..|. .+
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l 699 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSL 699 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhh
Confidence 8888876654445566666888888887655421 11122233444454444432221 0001111112211 22
Q ss_pred EccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhC------CCCCCEEEccCCcccccCCccccCCCCCCEEEC
Q 018826 179 DLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGK------LFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTL 252 (350)
Q Consensus 179 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~------~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l 252 (350)
.+.++... .....+..+.+|+.|.+.++.+.......... ++++..+...++... ..+...--.++|+.|.+
T Consensus 700 ~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l 777 (889)
T KOG4658|consen 700 SIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSL 777 (889)
T ss_pred hhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEE
Confidence 22222221 23344666777888888877765332211111 112222222222211 11111122477777777
Q ss_pred CCCcCcccCchhhcccCCCCEEEccccccc
Q 018826 253 NHNSLDGTIRPEMGEILLLQNLDLSHNNLS 282 (350)
Q Consensus 253 ~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~ 282 (350)
.++.....+.+....+..+..+-+..+.+.
T Consensus 778 ~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 778 VSCRLLEDIIPKLKALLELKELILPFNKLE 807 (889)
T ss_pred ecccccccCCCHHHHhhhcccEEecccccc
Confidence 777665555555555555555444444443
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.81 E-value=6.5e-10 Score=102.08 Aligned_cols=233 Identities=29% Similarity=0.315 Sum_probs=167.3
Q ss_pred cceecCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCc
Q 018826 16 ENTCTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPS 95 (350)
Q Consensus 16 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 95 (350)
+....+-..+..+++|+.+++.+|.+..+.. .+..+++|++|++++|.|+...+ +..++.|+.|++.+|.+... .
T Consensus 82 n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~--~ 156 (414)
T KOG0531|consen 82 NLIAKILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI--S 156 (414)
T ss_pred hhhhhhhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccccc--hhhccchhhheeccCcchhc--c
Confidence 3334455557888999999999999985432 26789999999999999986543 56778899999999998744 3
Q ss_pred cccCCCCCcEEEccCCccccccC-ccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccCCC-
Q 018826 96 TLFRLTNLEVLYLGFNQFNGTIP-REIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLS- 173 (350)
Q Consensus 96 ~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~- 173 (350)
.+..++.|+.+++++|.+..... . ...+.+++.+.+.+|.+..+ ..+.....+..+++..|.+....+ +....
T Consensus 157 ~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~ 231 (414)
T KOG0531|consen 157 GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEG--LNELVM 231 (414)
T ss_pred CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccC--cccchh
Confidence 46668999999999999985544 2 57789999999999988755 334445555566777777653322 12222
Q ss_pred -CCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCccccc---CCcc-ccCCCCCC
Q 018826 174 -ALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGS---IPTE-IGNCSELK 248 (350)
Q Consensus 174 -~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~---~~~~-~~~~~~L~ 248 (350)
.|+.+++++|++... +..+..+..+..+++..+.+... ..+...+.+..+....+.+... .... ....+.++
T Consensus 232 ~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (414)
T KOG0531|consen 232 LHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLV 308 (414)
T ss_pred HHHHHHhcccCccccc-cccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccc
Confidence 388999999998733 24577788899999999987643 2344556666677777766521 1111 34568889
Q ss_pred EEECCCCcCcccC
Q 018826 249 NLTLNHNSLDGTI 261 (350)
Q Consensus 249 ~L~l~~n~i~~~~ 261 (350)
.+.+.+|.+....
T Consensus 309 ~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 309 TLTLELNPIRKIS 321 (414)
T ss_pred ccccccCcccccc
Confidence 9999999887544
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.62 E-value=3.8e-08 Score=97.12 Aligned_cols=252 Identities=22% Similarity=0.258 Sum_probs=161.5
Q ss_pred CCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCc--CCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcE
Q 018826 28 LRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNN--LTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEV 105 (350)
Q Consensus 28 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 105 (350)
....+...+-++.+.. .+... .+++|++|-+.+|. +......+|..++.|+.|++++|.-.+..|..++.+.+|++
T Consensus 522 ~~~~rr~s~~~~~~~~-~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEH-IAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred hhheeEEEEeccchhh-ccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 3566777777776652 23322 45689999998885 55555667888999999999988777788999999999999
Q ss_pred EEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccc--cCccccccCCCCCCEEEccCC
Q 018826 106 LYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLH--SSIPLEIGNLSALEELDLSDN 183 (350)
Q Consensus 106 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~l~~~~~L~~L~l~~n 183 (350)
|++++..+. ..|..+..+.+|.+|++..+......+.....+.+|++|.+...... ...-..+..+..|+.+.....
T Consensus 600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred ccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence 999999988 67889999999999999887655555566677999999998655421 112223334444444444332
Q ss_pred cccccCCcccCCCCCCC----EEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccC------CCCCCEEECC
Q 018826 184 KIHGIIPDELTKLSQLK----NLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGN------CSELKNLTLN 253 (350)
Q Consensus 184 ~~~~~~~~~~~~~~~L~----~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~------~~~L~~L~l~ 253 (350)
.. .....+..+..|. .+.+.++... ..+..+..+.+|+.|.+.++.+.......... ++++..+.+.
T Consensus 679 s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~ 755 (889)
T KOG4658|consen 679 SV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSIL 755 (889)
T ss_pred hh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhh
Confidence 22 0111223333333 3333333333 34456778899999999999886432222111 3344444444
Q ss_pred CCcCcccCchhhcccCCCCEEEcccccc-ccccC
Q 018826 254 HNSLDGTIRPEMGEILLLQNLDLSHNNL-SGTIT 286 (350)
Q Consensus 254 ~n~i~~~~~~~~~~~~~L~~L~l~~N~i-~~~~p 286 (350)
++.......+ ....++|+.|.+..+.. ...+|
T Consensus 756 ~~~~~r~l~~-~~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 756 NCHMLRDLTW-LLFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred ccccccccch-hhccCcccEEEEecccccccCCC
Confidence 4443322221 22348999999999854 44444
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=1.1e-08 Score=85.43 Aligned_cols=229 Identities=20% Similarity=0.195 Sum_probs=136.4
Q ss_pred cCCCCCcCEEEccCCcCCCCC-Cccc-CCCCCCCEEEccCCcCCC--CcchhccCCCCCcEEecccccccCCCCccccCC
Q 018826 25 IGSLRNLEVLDLVSNNLNGTI-PKEI-GTLRNLMGLHLSSNNLTG--ELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRL 100 (350)
Q Consensus 25 ~~~l~~L~~L~l~~~~~~~~~-~~~~-~~l~~L~~L~l~~~~i~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 100 (350)
+....-++.+.+.++.+.... ...| ..+..++.+||.+|.|+. .+..-+.++|.|+.|+++.|++...+...-...
T Consensus 41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~ 120 (418)
T KOG2982|consen 41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPL 120 (418)
T ss_pred eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccc
Confidence 333344445666666654321 1122 256778888888888873 222335678888899998888764433221356
Q ss_pred CCCcEEEccCCccccccC-ccccCCCCCCEEEcccCccccccc--hhhh-ccCCccEEecCCCcccc--CccccccCCCC
Q 018826 101 TNLEVLYLGFNQFNGTIP-REIGHLKNLTYLFIKVNKLTGAIR--STLG-QLTSLLQLDLSSNQLHS--SIPLEIGNLSA 174 (350)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~--~~~~-~~~~L~~L~l~~n~~~~--~~~~~l~~~~~ 174 (350)
.+|+.|-+.+..+..... ..+..+|+++++.++.|....... .... ..+.++++++..|.... .....-..+|+
T Consensus 121 ~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn 200 (418)
T KOG2982|consen 121 KNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPN 200 (418)
T ss_pred cceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence 688888888777663322 335667888888888775432111 1111 12346666665554321 01111233577
Q ss_pred CCEEEccCCcccccCC-cccCCCCCCCEEECCCCcCccc-cchhhhCCCCCCEEEccCCcccccCCc------cccCCCC
Q 018826 175 LEELDLSDNKIHGIIP-DELTKLSQLKNLNISSNLLSGQ-IPSAIGKLFNLKYLDLSKNKLGGSIPT------EIGNCSE 246 (350)
Q Consensus 175 L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~i~~~~~~------~~~~~~~ 246 (350)
+..+.+..|.+.+... +.....+.+..|.++.+++.+- ..+.+..++.|..|.++++.+.+.... .++.+++
T Consensus 201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~ 280 (418)
T KOG2982|consen 201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTK 280 (418)
T ss_pred chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccc
Confidence 8888888887765432 3455567777888888887632 335667788888888888888753222 2355677
Q ss_pred CCEEECC
Q 018826 247 LKNLTLN 253 (350)
Q Consensus 247 L~~L~l~ 253 (350)
++.|+=+
T Consensus 281 v~vLNGs 287 (418)
T KOG2982|consen 281 VQVLNGS 287 (418)
T ss_pred eEEecCc
Confidence 7776644
No 44
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.47 E-value=2e-08 Score=82.85 Aligned_cols=63 Identities=17% Similarity=0.142 Sum_probs=28.7
Q ss_pred CCCCCEEECCCCcCccc----cchhhhCCCCCCEEEccCCcccccCCccc------cCCCCCCEEECCCCcCc
Q 018826 196 LSQLKNLNISSNLLSGQ----IPSAIGKLFNLKYLDLSKNKLGGSIPTEI------GNCSELKNLTLNHNSLD 258 (350)
Q Consensus 196 ~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~i~~~~~~~~------~~~~~L~~L~l~~n~i~ 258 (350)
+.+|+.|++.+|.++.. ...++..|+.|+.|.+..|-++.....++ ...|+|..|...+|.+.
T Consensus 213 ~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 213 SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred hCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 44555555555554421 22233445555555555555542221111 11355555555555543
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=6.3e-08 Score=81.00 Aligned_cols=231 Identities=19% Similarity=0.175 Sum_probs=144.2
Q ss_pred CCCCCCCEEEccCCcCCCCc-chhc-cCCCCCcEEecccccccCC--CCccccCCCCCcEEEccCCccccccCccccCCC
Q 018826 50 GTLRNLMGLHLSSNNLTGEL-PQEI-ENLKSLIRLFVRNNTLGGP--IPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLK 125 (350)
Q Consensus 50 ~~l~~L~~L~l~~~~i~~~~-~~~~-~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 125 (350)
.....++-+.+.++.|...- ...| ..++.++++++.+|.+... +...+.++|.|+.|+++.|.+...+...-....
T Consensus 42 ~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~ 121 (418)
T KOG2982|consen 42 SSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLK 121 (418)
T ss_pred ccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccccc
Confidence 33445556667676664221 1122 2567889999999988642 223456789999999999988854432224567
Q ss_pred CCCEEEcccCccccccc-hhhhccCCccEEecCCCcccc--CccccccC-CCCCCEEEccCCccccc--CCcccCCCCCC
Q 018826 126 NLTYLFIKVNKLTGAIR-STLGQLTSLLQLDLSSNQLHS--SIPLEIGN-LSALEELDLSDNKIHGI--IPDELTKLSQL 199 (350)
Q Consensus 126 ~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~--~~~~~l~~-~~~L~~L~l~~n~~~~~--~~~~~~~~~~L 199 (350)
+|+.|.+.+..+..... ..+..+|+++.|+++.|.+.. ........ .+.++++++.+|..... ....-.-++++
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv 201 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNV 201 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccc
Confidence 88999988887764322 345668888999988884321 11222222 23677777777754321 11112345778
Q ss_pred CEEECCCCcCccc-cchhhhCCCCCCEEEccCCccccc-CCccccCCCCCCEEECCCCcCcccCch------hhcccCCC
Q 018826 200 KNLNISSNLLSGQ-IPSAIGKLFNLKYLDLSKNKLGGS-IPTEIGNCSELKNLTLNHNSLDGTIRP------EMGEILLL 271 (350)
Q Consensus 200 ~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~i~~~~~~------~~~~~~~L 271 (350)
..+-+..+.+... .-..+..++.+..|+|+.++|.+- ..+.+.++++|..|+++++.+...... -+..++++
T Consensus 202 ~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v 281 (418)
T KOG2982|consen 202 NSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKV 281 (418)
T ss_pred hheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccce
Confidence 8888888866532 123445667788899999988742 335677889999999999988744332 13445666
Q ss_pred CEEEccccccc
Q 018826 272 QNLDLSHNNLS 282 (350)
Q Consensus 272 ~~L~l~~N~i~ 282 (350)
+.|+=+ +|+
T Consensus 282 ~vLNGs--kIs 290 (418)
T KOG2982|consen 282 QVLNGS--KIS 290 (418)
T ss_pred EEecCc--ccc
Confidence 666533 554
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=6.8e-09 Score=86.68 Aligned_cols=177 Identities=22% Similarity=0.200 Sum_probs=121.1
Q ss_pred CCCcEEEccCCccccc-cCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCc-cccC-ccccccCCCCCCE
Q 018826 101 TNLEVLYLGFNQFNGT-IPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQ-LHSS-IPLEIGNLSALEE 177 (350)
Q Consensus 101 ~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~-~~~~l~~~~~L~~ 177 (350)
..|+++|++...++.. ....+..|.+|+.|.+.++.+.+.....+.+-.+|+.++++.+. ++.. ....+..+..|.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 3688888888777622 22345778889999998888887766777788889999988763 3321 2234567888888
Q ss_pred EEccCCcccccCCcc-c-CCCCCCCEEECCCCcCc---cccchhhhCCCCCCEEEccCCc-ccccCCccccCCCCCCEEE
Q 018826 178 LDLSDNKIHGIIPDE-L-TKLSQLKNLNISSNLLS---GQIPSAIGKLFNLKYLDLSKNK-LGGSIPTEIGNCSELKNLT 251 (350)
Q Consensus 178 L~l~~n~~~~~~~~~-~-~~~~~L~~L~l~~n~~~---~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~~~L~~L~ 251 (350)
|+++-|.+....... + .--++|+.|+++|+.-. ..+......+++|.+|||++|. ++......|-.++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 988888754321111 1 12357888999887422 1233344678999999999876 4433334566789999999
Q ss_pred CCCCcCcccCch---hhcccCCCCEEEcccc
Q 018826 252 LNHNSLDGTIRP---EMGEILLLQNLDLSHN 279 (350)
Q Consensus 252 l~~n~i~~~~~~---~~~~~~~L~~L~l~~N 279 (350)
++.|..- +|. .+...|+|.+||+.++
T Consensus 345 lsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 9999763 444 3466788999998876
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=8.2e-09 Score=86.21 Aligned_cols=57 Identities=21% Similarity=0.257 Sum_probs=26.3
Q ss_pred cCEEEccCCcCCCC-CCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccc
Q 018826 31 LEVLDLVSNNLNGT-IPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNN 87 (350)
Q Consensus 31 L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n 87 (350)
|+.+||++..++.. +...++.|.+|+.|.+.++++.+.+...++.-.+|+.|+++.+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC 244 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence 44455555444321 1122334555555555555555444444444455555555543
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.29 E-value=1.6e-08 Score=94.02 Aligned_cols=127 Identities=29% Similarity=0.275 Sum_probs=71.2
Q ss_pred CCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECC
Q 018826 126 NLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNIS 205 (350)
Q Consensus 126 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 205 (350)
+|...+++.|.+. .+..++.-++.++.|+|++|++... +.+..++.|++||++.|.++.+.-....++. |..|.++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 4555555555554 2234455566667777777766532 2566666777777777766643322233333 6677777
Q ss_pred CCcCccccchhhhCCCCCCEEEccCCccccc-CCccccCCCCCCEEECCCCcCc
Q 018826 206 SNLLSGQIPSAIGKLFNLKYLDLSKNKLGGS-IPTEIGNCSELKNLTLNHNSLD 258 (350)
Q Consensus 206 ~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~i~ 258 (350)
+|.++.. ..+.++.+|+.||++.|-+.+. ....+..+..|+.|.|.||.+.
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 7766522 2345666677777777666531 1111233456666677777664
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.28 E-value=1.6e-08 Score=93.91 Aligned_cols=197 Identities=26% Similarity=0.299 Sum_probs=121.5
Q ss_pred CCCcEEecccccccCCC-CccccCCCCCcEEEccCCccccccCccccCC-CCCCEEEcccCcccc---ccc---hhhhc-
Q 018826 77 KSLIRLFVRNNTLGGPI-PSTLFRLTNLEVLYLGFNQFNGTIPREIGHL-KNLTYLFIKVNKLTG---AIR---STLGQ- 147 (350)
Q Consensus 77 ~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n~~~~---~~~---~~~~~- 147 (350)
++++.|.+-...-.+.. |-.++.+.+|+.|.+.++.+... ..+..+ ..|++|.-. +.+.. +.. ..+++
T Consensus 84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns 160 (1096)
T KOG1859|consen 84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNS 160 (1096)
T ss_pred hhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccc
Confidence 44445544443322222 45566778899999988877631 122111 234444322 11110 100 01111
Q ss_pred --cCCccEEecCCCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCE
Q 018826 148 --LTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKY 225 (350)
Q Consensus 148 --~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 225 (350)
..+|...+++.|.+. .....+.-.+.++.|+++.|.++.+. .+..++.|++|+++.|.+.....-....+ +|..
T Consensus 161 ~~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~ 236 (1096)
T KOG1859|consen 161 PVWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQL 236 (1096)
T ss_pred hhhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhh-hhee
Confidence 235777778888775 56667777788899999999887653 57788889999999998873322222333 4888
Q ss_pred EEccCCcccccCCccccCCCCCCEEECCCCcCcccCc-hhhcccCCCCEEEccccccc
Q 018826 226 LDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIR-PEMGEILLLQNLDLSHNNLS 282 (350)
Q Consensus 226 L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~~L~~L~l~~N~i~ 282 (350)
|.+++|.++ .+ ..+.++.+|+.||+++|-+.+.-. ..+..+..|+.|.|.+|.+-
T Consensus 237 L~lrnN~l~-tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 237 LNLRNNALT-TL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeecccHHH-hh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 999999887 33 236678888889999998764321 12345677888888888774
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.24 E-value=4.3e-07 Score=75.19 Aligned_cols=221 Identities=19% Similarity=0.188 Sum_probs=121.4
Q ss_pred CCCCCEEEccCCcCCCCcchhc----cCCCCCcEEecccccccCCCCccccCCCCCcEEEccCCccccccCccccCCCCC
Q 018826 52 LRNLMGLHLSSNNLTGELPQEI----ENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNL 127 (350)
Q Consensus 52 l~~L~~L~l~~~~i~~~~~~~~----~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 127 (350)
+..+..++|++|.|...-...+ .+-.+|+..+++.-. ++...+.+.. + +. ....++..||.|
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~--~----------L~-~Ll~aLlkcp~l 94 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYS--N----------LV-MLLKALLKCPRL 94 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHH--H----------HH-HHHHHHhcCCcc
Confidence 5667777777777764333322 333556655555421 1111110000 0 00 111234455555
Q ss_pred CEEEcccCccccccch----hhhccCCccEEecCCCccccCcc-------------ccccCCCCCCEEEccCCcccccCC
Q 018826 128 TYLFIKVNKLTGAIRS----TLGQLTSLLQLDLSSNQLHSSIP-------------LEIGNLSALEELDLSDNKIHGIIP 190 (350)
Q Consensus 128 ~~L~l~~n~~~~~~~~----~~~~~~~L~~L~l~~n~~~~~~~-------------~~l~~~~~L~~L~l~~n~~~~~~~ 190 (350)
+.++++.|.+....+. .+++...|++|.+.+|++....- ....+-|.|+.+....|++.....
T Consensus 95 ~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~ 174 (388)
T COG5238 95 QKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSK 174 (388)
T ss_pred eeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcH
Confidence 5555555554433222 23444555666665555432111 112334678888888887653221
Q ss_pred c----ccCCCCCCCEEECCCCcCcccc-----chhhhCCCCCCEEEccCCccccc----CCccccCCCCCCEEECCCCcC
Q 018826 191 D----ELTKLSQLKNLNISSNLLSGQI-----PSAIGKLFNLKYLDLSKNKLGGS----IPTEIGNCSELKNLTLNHNSL 257 (350)
Q Consensus 191 ~----~~~~~~~L~~L~l~~n~~~~~~-----~~~~~~~~~L~~L~l~~n~i~~~----~~~~~~~~~~L~~L~l~~n~i 257 (350)
. .+..-..|+.+.+..|.|.... -..+..+.+|+.||++.|-++.. +..+++..+.|+.|.+.+|-+
T Consensus 175 ~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 175 ELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred HHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence 1 1222257888888888775321 12235678999999999998743 233455667899999999988
Q ss_pred cccCchhh------cccCCCCEEEccccccccccC
Q 018826 258 DGTIRPEM------GEILLLQNLDLSHNNLSGTIT 286 (350)
Q Consensus 258 ~~~~~~~~------~~~~~L~~L~l~~N~i~~~~p 286 (350)
+.....++ ...|+|..|...+|.+.+.+.
T Consensus 255 s~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i 289 (388)
T COG5238 255 SNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGII 289 (388)
T ss_pred ccccHHHHHHHhhhhcCCCccccccchhhhcCcee
Confidence 75543332 235788888899987765443
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.22 E-value=2.3e-06 Score=67.85 Aligned_cols=123 Identities=25% Similarity=0.251 Sum_probs=79.3
Q ss_pred CEEEccCCcCCCCCCcccC-CCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcEEEccC
Q 018826 32 EVLDLVSNNLNGTIPKEIG-TLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGF 110 (350)
Q Consensus 32 ~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 110 (350)
+.+++++.++....- ++ -......+||++|.+... +.|..++.|.+|.+.+|.|+.+.|.--..+++|+.|.+.+
T Consensus 22 ~e~~LR~lkip~ien--lg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 22 RELDLRGLKIPVIEN--LGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred cccccccccccchhh--ccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 445555555442211 11 234566788888877632 3466778888888888888877666555567888888888
Q ss_pred Ccccccc-CccccCCCCCCEEEcccCccccc---cchhhhccCCccEEecCC
Q 018826 111 NQFNGTI-PREIGHLKNLTYLFIKVNKLTGA---IRSTLGQLTSLLQLDLSS 158 (350)
Q Consensus 111 n~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~---~~~~~~~~~~L~~L~l~~ 158 (350)
|.+.... -+.++.||+|++|.+-+|.+... ....+..+|+|+.|++..
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 8776321 23467788888888888776643 223456677777777754
No 52
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.22 E-value=5.6e-06 Score=62.89 Aligned_cols=105 Identities=19% Similarity=0.160 Sum_probs=42.2
Q ss_pred ccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCC
Q 018826 24 EIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNL 103 (350)
Q Consensus 24 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 103 (350)
.|.++++|+.+.+.. .+..+....|..+++|+.+.+.++ +......+|.++++++.+.+.+ .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 455555666665543 344344455555555666665543 4433344455555556555544 2222333444455555
Q ss_pred cEEEccCCccccccCccccCCCCCCEEEcc
Q 018826 104 EVLYLGFNQFNGTIPREIGHLKNLTYLFIK 133 (350)
Q Consensus 104 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 133 (350)
+.+.+..+ +.......|.++ +|+.+.+.
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 55555443 332333444444 55555544
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.13 E-value=1e-07 Score=70.71 Aligned_cols=83 Identities=22% Similarity=0.328 Sum_probs=37.4
Q ss_pred CCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEcc
Q 018826 198 QLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLS 277 (350)
Q Consensus 198 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~ 277 (350)
.|+.+++++|.+....+..-..++.++.|++++|.|+ .+|..+..++.|+.|+++.|.+... |..+..+.++.+|+..
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~-p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAE-PRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccc-hHHHHHHHhHHHhcCC
Confidence 3444455555544222222222334555555555555 3444455555555555555555432 2222224455555555
Q ss_pred ccccc
Q 018826 278 HNNLS 282 (350)
Q Consensus 278 ~N~i~ 282 (350)
+|.+-
T Consensus 132 ~na~~ 136 (177)
T KOG4579|consen 132 ENARA 136 (177)
T ss_pred CCccc
Confidence 55443
No 54
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.12 E-value=1.1e-05 Score=61.15 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=17.8
Q ss_pred ccCCCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEec
Q 018826 97 LFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDL 156 (350)
Q Consensus 97 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 156 (350)
|..+.+|+.+.+.. .+..+....|..+++|+.+.+..+ +......+|..+++++.+.+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~ 65 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITF 65 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccc
Confidence 33344444444432 222233333444444444444332 33333333344434444444
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.09 E-value=3.9e-06 Score=50.20 Aligned_cols=36 Identities=33% Similarity=0.615 Sum_probs=17.3
Q ss_pred CCCEEECCCCcCcccCchhhcccCCCCEEEccccccc
Q 018826 246 ELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLS 282 (350)
Q Consensus 246 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~ 282 (350)
+|++|++++|+|+. +++.+..+++|+.|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 45555555555552 3333455555555555555554
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.05 E-value=9.8e-06 Score=64.35 Aligned_cols=106 Identities=25% Similarity=0.334 Sum_probs=74.0
Q ss_pred CCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCccccc-CCccccCCCCCCEEEC
Q 018826 174 ALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGS-IPTEIGNCSELKNLTL 252 (350)
Q Consensus 174 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l 252 (350)
+...+++++|.+... ..|..++.|..|.+.+|+|+.+.|..-..+++|+.|.+.+|.|... ....+..||.|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 456677888776533 3467778888888888888877776666677888888888887531 1223566788888888
Q ss_pred CCCcCcccC---chhhcccCCCCEEEcccccc
Q 018826 253 NHNSLDGTI---RPEMGEILLLQNLDLSHNNL 281 (350)
Q Consensus 253 ~~n~i~~~~---~~~~~~~~~L~~L~l~~N~i 281 (350)
-+|+++... ...+..+|+|+.||+++-.-
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 888876322 12456678888888876543
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.03 E-value=4.3e-06 Score=49.99 Aligned_cols=36 Identities=39% Similarity=0.687 Sum_probs=20.7
Q ss_pred CCCEEEccCCcccccCCccccCCCCCCEEECCCCcCc
Q 018826 222 NLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLD 258 (350)
Q Consensus 222 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~ 258 (350)
+|++|++++|+|+ .+|..+..+++|++|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5666666666666 33444566666666666666665
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.01 E-value=4.5e-07 Score=67.32 Aligned_cols=135 Identities=25% Similarity=0.258 Sum_probs=90.6
Q ss_pred CccEEecCCCcccc--CccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEE
Q 018826 150 SLLQLDLSSNQLHS--SIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLD 227 (350)
Q Consensus 150 ~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 227 (350)
.+..+++++|++.. ..+..+..-..|+.+++++|.+..+.+..-..++.++.|++++|.+. .+|..+..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 35567777776542 12233444556777888888888655554456678888888888887 6677788888899999
Q ss_pred ccCCcccccCCccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEccccccccccCC
Q 018826 228 LSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTITK 287 (350)
Q Consensus 228 l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p~ 287 (350)
++.|.+. ..|..+..+.++-.|+..+|.+.. ++..+..-...-.+++.++.+.+.-+.
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~e-id~dl~~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARAE-IDVDLFYSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCcccc-CcHHHhccccHHHHHhcCCcccccCcc
Confidence 9988888 667666667888888888888874 443333223333445555566654443
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.75 E-value=0.00018 Score=64.60 Aligned_cols=57 Identities=21% Similarity=0.285 Sum_probs=32.0
Q ss_pred ccCCCCCcEEecccccccCCCCccccCCCCCcEEEccCCccccccCccccCCCCCCEEEcccC
Q 018826 73 IENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVN 135 (350)
Q Consensus 73 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 135 (350)
+..+.++++|++++|.+.. .|. + .++|++|.+.++.-....|..+ .++|++|.+++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-LP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-LPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-cCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 3446777788888776653 331 1 2367777777643322334333 246666666655
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.67 E-value=0.00038 Score=62.57 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=24.2
Q ss_pred CCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcEEEccCC
Q 018826 52 LRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFN 111 (350)
Q Consensus 52 l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 111 (350)
+++++.|++++|.+. .+|. -.++|++|.+.++.-....|..+ .++|++|.+.+|
T Consensus 51 ~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 455555555555444 2231 11245555555433222333322 135555555554
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.49 E-value=4.5e-05 Score=73.88 Aligned_cols=151 Identities=21% Similarity=0.223 Sum_probs=88.6
Q ss_pred CCCcEEecccccccC-CCCcccc-CCCCCcEEEccCCcccc-ccCccccCCCCCCEEEcccCccccccchhhhccCCccE
Q 018826 77 KSLIRLFVRNNTLGG-PIPSTLF-RLTNLEVLYLGFNQFNG-TIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQ 153 (350)
Q Consensus 77 ~~L~~L~l~~n~~~~-~~~~~~~-~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 153 (350)
.+|++|++++..... ..+..++ .+|.|++|.+.+-.+.. .+.....++|+|..|++++.+++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 468888887754321 1222233 36888888887765542 2233446778888888888888765 56677788888
Q ss_pred EecCCCcccc-CccccccCCCCCCEEEccCCcccccC------CcccCCCCCCCEEECCCCcCccccchh-hhCCCCCCE
Q 018826 154 LDLSSNQLHS-SIPLEIGNLSALEELDLSDNKIHGII------PDELTKLSQLKNLNISSNLLSGQIPSA-IGKLFNLKY 225 (350)
Q Consensus 154 L~l~~n~~~~-~~~~~l~~~~~L~~L~l~~n~~~~~~------~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~~L~~ 225 (350)
|.+.+-.+.. ..-..+..+.+|+.||+|........ -+.-..+|.|+.||.+++.+.+..-.. +...++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 7776555432 12234556778888888775432211 112234677777777777666433222 233445555
Q ss_pred EEcc
Q 018826 226 LDLS 229 (350)
Q Consensus 226 L~l~ 229 (350)
+..-
T Consensus 280 i~~~ 283 (699)
T KOG3665|consen 280 IAAL 283 (699)
T ss_pred hhhh
Confidence 4433
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.43 E-value=8.5e-05 Score=71.97 Aligned_cols=83 Identities=25% Similarity=0.360 Sum_probs=34.5
Q ss_pred cCCccEEecCCCccccC-ccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCcc-ccchhhhCCCCCCE
Q 018826 148 LTSLLQLDLSSNQLHSS-IPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSG-QIPSAIGKLFNLKY 225 (350)
Q Consensus 148 ~~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~ 225 (350)
+|+|++|.+.+-.+... ......++++|..||+++.+++.. ..++.+++|+.|.+.+-.+.. ..-..+-.+++|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 45555555544333211 122233445555555555444422 234444444444444433321 11112334455555
Q ss_pred EEccCCc
Q 018826 226 LDLSKNK 232 (350)
Q Consensus 226 L~l~~n~ 232 (350)
||+|...
T Consensus 225 LDIS~~~ 231 (699)
T KOG3665|consen 225 LDISRDK 231 (699)
T ss_pred eeccccc
Confidence 5555443
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.28 E-value=0.00012 Score=60.67 Aligned_cols=68 Identities=24% Similarity=0.288 Sum_probs=31.2
Q ss_pred CCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCC--cCCCCcchhccCCCCCcEEeccccccc
Q 018826 21 IPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSN--NLTGELPQEIENLKSLIRLFVRNNTLG 90 (350)
Q Consensus 21 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~--~i~~~~~~~~~~l~~L~~L~l~~n~~~ 90 (350)
+......+..|+.+++.+..++.. ..+-.+|+|++|.++.| .+...++.....+|+|+++.+++|++.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 444444444555555444444321 12334555555555555 333222222334455555555555543
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=4.2e-05 Score=63.90 Aligned_cols=98 Identities=23% Similarity=0.241 Sum_probs=55.9
Q ss_pred CCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCccccc-CCccccCCCCCCEEEC
Q 018826 174 ALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGS-IPTEIGNCSELKNLTL 252 (350)
Q Consensus 174 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l 252 (350)
+.+.|++.||++.++ .....++.|+.|.|+-|.++.. ..+..|++|+.|.|..|.|.+. ....+.++|+|++|.|
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 445566666665543 2244566666666666666533 2356666677777777766632 1234556677777777
Q ss_pred CCCcCcccCch-----hhcccCCCCEEE
Q 018826 253 NHNSLDGTIRP-----EMGEILLLQNLD 275 (350)
Q Consensus 253 ~~n~i~~~~~~-----~~~~~~~L~~L~ 275 (350)
..|.-.+..+. .+..+|+|+.||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 77665544332 234456666665
No 65
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.82 E-value=2.8e-05 Score=68.44 Aligned_cols=137 Identities=18% Similarity=0.089 Sum_probs=77.8
Q ss_pred ccCCccEEecCCCccccC--ccccccCCCCCCEEEccCCc-ccccCCccc-CCCCCCCEEECCCCcCccc--cchhhhCC
Q 018826 147 QLTSLLQLDLSSNQLHSS--IPLEIGNLSALEELDLSDNK-IHGIIPDEL-TKLSQLKNLNISSNLLSGQ--IPSAIGKL 220 (350)
Q Consensus 147 ~~~~L~~L~l~~n~~~~~--~~~~l~~~~~L~~L~l~~n~-~~~~~~~~~-~~~~~L~~L~l~~n~~~~~--~~~~~~~~ 220 (350)
.+..|+.+..+++...+. +..--.++.+|+.+.+.+|. ++......+ .+.+.|+.+++..+..... +...-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 345566666665532211 11112456778888887775 222211122 3456788888887754321 22333467
Q ss_pred CCCCEEEccCCcc-cccC----CccccCCCCCCEEECCCCcCc-ccCchhhcccCCCCEEEccccc-ccc
Q 018826 221 FNLKYLDLSKNKL-GGSI----PTEIGNCSELKNLTLNHNSLD-GTIRPEMGEILLLQNLDLSHNN-LSG 283 (350)
Q Consensus 221 ~~L~~L~l~~n~i-~~~~----~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~N~-i~~ 283 (350)
+.|+.+.++++.. ++.. ...-.....|+.+.++++... +.....+..++.|+.+++-+++ ++.
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence 7888888887763 3221 112234577888888888653 3334455667788888887773 443
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.79 E-value=0.00087 Score=55.67 Aligned_cols=108 Identities=27% Similarity=0.267 Sum_probs=72.4
Q ss_pred cccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCC--cCccccchhhhCCCCCCEEEccCCccccc-CCccccCC
Q 018826 168 EIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSN--LLSGQIPSAIGKLFNLKYLDLSKNKLGGS-IPTEIGNC 244 (350)
Q Consensus 168 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n--~~~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~ 244 (350)
.......++.+.+.+..++.. ..+..+++|++|.++.| .+.+-+......+|+|+++++++|+|... -...+..+
T Consensus 38 l~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred ccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhh
Confidence 334455667777777776644 34667789999999999 55544444455679999999999998731 11223456
Q ss_pred CCCCEEECCCCcCcccCc---hhhcccCCCCEEEcc
Q 018826 245 SELKNLTLNHNSLDGTIR---PEMGEILLLQNLDLS 277 (350)
Q Consensus 245 ~~L~~L~l~~n~i~~~~~---~~~~~~~~L~~L~l~ 277 (350)
.+|..|++..|..+..-. ..|.-+++|+++|-.
T Consensus 116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred cchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 778889999998775322 245556778877643
No 67
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.73 E-value=3.6e-05 Score=67.76 Aligned_cols=250 Identities=18% Similarity=0.092 Sum_probs=134.9
Q ss_pred CCCCCcCEEEccCCc-CCCCCCccc-CCCCCCCEEEccCC-cCCCCcchh-ccCCCCCcEEeccccc-ccCCC-CccccC
Q 018826 26 GSLRNLEVLDLVSNN-LNGTIPKEI-GTLRNLMGLHLSSN-NLTGELPQE-IENLKSLIRLFVRNNT-LGGPI-PSTLFR 99 (350)
Q Consensus 26 ~~l~~L~~L~l~~~~-~~~~~~~~~-~~l~~L~~L~l~~~-~i~~~~~~~-~~~l~~L~~L~l~~n~-~~~~~-~~~~~~ 99 (350)
.++|+++.|.+.++. +++..-..+ ..+++|++|++..| .++...-.. -..+++|++++++.+. +.+.. ...+.+
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 467777777777664 332222222 25677777777664 344322221 2356777777776553 22110 011222
Q ss_pred CCCCcEE--------------------------EccCCc-ccccc-CccccCCCCCCEEEcccCcc-ccccchh-hhccC
Q 018826 100 LTNLEVL--------------------------YLGFNQ-FNGTI-PREIGHLKNLTYLFIKVNKL-TGAIRST-LGQLT 149 (350)
Q Consensus 100 l~~L~~L--------------------------~l~~n~-l~~~~-~~~l~~l~~L~~L~l~~n~~-~~~~~~~-~~~~~ 149 (350)
+..++.+ ++.++. +++.. ...-..+..|+.+..++... ......+ -.+.+
T Consensus 241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~ 320 (483)
T KOG4341|consen 241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCH 320 (483)
T ss_pred chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCC
Confidence 3333333 333321 11110 01113356677777665432 2221122 24578
Q ss_pred CccEEecCCCc-cccCccccc-cCCCCCCEEEccCCccccc--CCcccCCCCCCCEEECCCCcCc-ccc----chhhhCC
Q 018826 150 SLLQLDLSSNQ-LHSSIPLEI-GNLSALEELDLSDNKIHGI--IPDELTKLSQLKNLNISSNLLS-GQI----PSAIGKL 220 (350)
Q Consensus 150 ~L~~L~l~~n~-~~~~~~~~l-~~~~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n~~~-~~~----~~~~~~~ 220 (350)
+|+.+.++.++ +++.-...+ .+++.|+.+++.++..... ....-.+++.|+.+.++++... +.. ...-...
T Consensus 321 ~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~ 400 (483)
T KOG4341|consen 321 NLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSL 400 (483)
T ss_pred ceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccc
Confidence 99999998886 222211222 3578899999988864321 2223356789999999988543 221 1112346
Q ss_pred CCCCEEEccCCccc-ccCCccccCCCCCCEEECCCCcCc-cc-CchhhcccCCCCEEE
Q 018826 221 FNLKYLDLSKNKLG-GSIPTEIGNCSELKNLTLNHNSLD-GT-IRPEMGEILLLQNLD 275 (350)
Q Consensus 221 ~~L~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~i~-~~-~~~~~~~~~~L~~L~ 275 (350)
..|+.+.+++++.. +.....+..+++|+.+++-+++-. .. +...-..+|+++..-
T Consensus 401 ~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 401 EGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred cccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence 78999999999854 344456778899999999998742 22 222234455555443
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.73 E-value=0.00028 Score=66.32 Aligned_cols=17 Identities=24% Similarity=0.143 Sum_probs=9.5
Q ss_pred hhCCCCCCEEEccCCcc
Q 018826 217 IGKLFNLKYLDLSKNKL 233 (350)
Q Consensus 217 ~~~~~~L~~L~l~~n~i 233 (350)
...+++++.+.+..+..
T Consensus 358 ~~~~~~l~~~~l~~~~~ 374 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCGI 374 (482)
T ss_pred HhcCCCcchhhhhhhhc
Confidence 34555666666655553
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.45 E-value=0.00032 Score=65.96 Aligned_cols=78 Identities=22% Similarity=0.158 Sum_probs=39.7
Q ss_pred cCCCCCCCEEECCCCcCcccc-chhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCccc-Cchhhcc-cC
Q 018826 193 LTKLSQLKNLNISSNLLSGQI-PSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGT-IRPEMGE-IL 269 (350)
Q Consensus 193 ~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~-~~ 269 (350)
...++.++.+.+..+...... ...+.++++|+ ..+.. .......++.|+++.+..... .-..... ..
T Consensus 358 ~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~---------~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~ 427 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLEL---------RLCRSDSLRVLNLSDCRLVTDKGLRCLADSCS 427 (482)
T ss_pred HhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHH---------HhccCCccceEecccCccccccchHHHhhhhh
Confidence 456777888888877744322 23455565552 11111 111122278888888765312 1111111 45
Q ss_pred CCCEEEccccc
Q 018826 270 LLQNLDLSHNN 280 (350)
Q Consensus 270 ~L~~L~l~~N~ 280 (350)
.++.+++.++.
T Consensus 428 ~~~~l~~~~~~ 438 (482)
T KOG1947|consen 428 NLKDLDLSGCR 438 (482)
T ss_pred ccccCCccCcc
Confidence 56667776664
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.95 E-value=0.00022 Score=59.73 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=15.9
Q ss_pred CCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccc
Q 018826 51 TLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTL 89 (350)
Q Consensus 51 ~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~ 89 (350)
.|+.|+.|.|+-|+|+...| |..|++|++|+|..|.|
T Consensus 39 kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I 75 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCI 75 (388)
T ss_pred hcccceeEEeeccccccchh--HHHHHHHHHHHHHhccc
Confidence 34444444444444442222 33444444444444444
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.21 E-value=0.009 Score=29.56 Aligned_cols=17 Identities=53% Similarity=0.747 Sum_probs=9.2
Q ss_pred CCEEEccccccccccCCc
Q 018826 271 LQNLDLSHNNLSGTITKT 288 (350)
Q Consensus 271 L~~L~l~~N~i~~~~p~~ 288 (350)
|++||+++|+|+ .+|..
T Consensus 2 L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp ESEEEETSSEES-EEGTT
T ss_pred ccEEECCCCcCE-eCChh
Confidence 455666666555 44443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.75 E-value=0.016 Score=28.62 Aligned_cols=19 Identities=47% Similarity=0.620 Sum_probs=9.5
Q ss_pred CCEEEccCCcCCCCcchhcc
Q 018826 55 LMGLHLSSNNLTGELPQEIE 74 (350)
Q Consensus 55 L~~L~l~~~~i~~~~~~~~~ 74 (350)
|++|++++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 3443333
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.61 E-value=0.0092 Score=47.86 Aligned_cols=81 Identities=16% Similarity=0.138 Sum_probs=43.1
Q ss_pred CCCEEECCCCcCccccchhhhCCCCCCEEEccCCccc-ccCCccc-cCCCCCCEEECCCC-cCcccCchhhcccCCCCEE
Q 018826 198 QLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLG-GSIPTEI-GNCSELKNLTLNHN-SLDGTIRPEMGEILLLQNL 274 (350)
Q Consensus 198 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~-~~~~~L~~L~l~~n-~i~~~~~~~~~~~~~L~~L 274 (350)
.++.++.++..+....-+.+..++.++.|.+.++.-- +.-.+.+ .-.++|+.|++++| +||+.....+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 3556666666555444455555666666666655421 1100001 12366777777766 3665555556666666666
Q ss_pred Eccc
Q 018826 275 DLSH 278 (350)
Q Consensus 275 ~l~~ 278 (350)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6554
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.30 E-value=0.00031 Score=65.18 Aligned_cols=89 Identities=27% Similarity=0.311 Sum_probs=41.9
Q ss_pred CCCCCEEECCCCcCccc----cchhhhCCCC-CCEEEccCCccccc----CCccccCC-CCCCEEECCCCcCcccCc---
Q 018826 196 LSQLKNLNISSNLLSGQ----IPSAIGKLFN-LKYLDLSKNKLGGS----IPTEIGNC-SELKNLTLNHNSLDGTIR--- 262 (350)
Q Consensus 196 ~~~L~~L~l~~n~~~~~----~~~~~~~~~~-L~~L~l~~n~i~~~----~~~~~~~~-~~L~~L~l~~n~i~~~~~--- 262 (350)
..++++|.+.++.++.. ...++...++ +..|++..|.+.+. ....+..+ +.++.++++.|.|++...
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 44555666666555421 1122333333 44466666665532 11122233 455666666666653322
Q ss_pred -hhhcccCCCCEEEccccccccc
Q 018826 263 -PEMGEILLLQNLDLSHNNLSGT 284 (350)
Q Consensus 263 -~~~~~~~~L~~L~l~~N~i~~~ 284 (350)
..+...+.++++.+++|.+...
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHhhhHHHHHhhcccCccccH
Confidence 2233444566666666655543
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.27 E-value=0.09 Score=24.08 Aligned_cols=11 Identities=45% Similarity=0.754 Sum_probs=3.5
Q ss_pred CCEEECCCCcC
Q 018826 247 LKNLTLNHNSL 257 (350)
Q Consensus 247 L~~L~l~~n~i 257 (350)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444443
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.06 E-value=0.029 Score=28.34 Aligned_cols=18 Identities=33% Similarity=0.407 Sum_probs=8.6
Q ss_pred CCCCEEEccccccccccC
Q 018826 269 LLLQNLDLSHNNLSGTIT 286 (350)
Q Consensus 269 ~~L~~L~l~~N~i~~~~p 286 (350)
++|+.|++++|+|++...
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 455556666665554443
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.03 E-value=0.24 Score=25.39 Aligned_cols=13 Identities=38% Similarity=0.695 Sum_probs=6.3
Q ss_pred CCCEEECCCCcCc
Q 018826 246 ELKNLTLNHNSLD 258 (350)
Q Consensus 246 ~L~~L~l~~n~i~ 258 (350)
+|++|++++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.03 E-value=0.24 Score=25.39 Aligned_cols=13 Identities=38% Similarity=0.695 Sum_probs=6.3
Q ss_pred CCCEEECCCCcCc
Q 018826 246 ELKNLTLNHNSLD 258 (350)
Q Consensus 246 ~L~~L~l~~n~i~ 258 (350)
+|++|++++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 79
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.60 E-value=0.00086 Score=62.29 Aligned_cols=36 Identities=33% Similarity=0.446 Sum_probs=16.4
Q ss_pred CCEEEccCCcCCCCc----chhccCCCCCcEEeccccccc
Q 018826 55 LMGLHLSSNNLTGEL----PQEIENLKSLIRLFVRNNTLG 90 (350)
Q Consensus 55 L~~L~l~~~~i~~~~----~~~~~~l~~L~~L~l~~n~~~ 90 (350)
+..+.+.+|.+.... ..++...++|+.|++++|.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 444455555444221 222334455555555555544
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.01 E-value=0.32 Score=24.92 Aligned_cols=14 Identities=50% Similarity=0.617 Sum_probs=7.0
Q ss_pred CCCCEEEccCCcCC
Q 018826 53 RNLMGLHLSSNNLT 66 (350)
Q Consensus 53 ~~L~~L~l~~~~i~ 66 (350)
++|++|++++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34455555555554
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.01 E-value=0.32 Score=24.92 Aligned_cols=14 Identities=50% Similarity=0.617 Sum_probs=7.0
Q ss_pred CCCCEEEccCCcCC
Q 018826 53 RNLMGLHLSSNNLT 66 (350)
Q Consensus 53 ~~L~~L~l~~~~i~ 66 (350)
++|++|++++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34455555555554
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.57 E-value=0.038 Score=44.44 Aligned_cols=84 Identities=21% Similarity=0.188 Sum_probs=48.5
Q ss_pred CCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccc-cchhh-hCCCCCCEEEccCCc-ccccCCccccCCCCCCEE
Q 018826 174 ALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQ-IPSAI-GKLFNLKYLDLSKNK-LGGSIPTEIGNCSELKNL 250 (350)
Q Consensus 174 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~-~~~~~L~~L~l~~n~-i~~~~~~~~~~~~~L~~L 250 (350)
.++.++-++..|..+.-+-+..++.++.|.+.+|.--+. --..+ +..++|+.|++++|. |++.....+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 356666666666555555666677777777766632111 00011 234677777777765 665444555666777777
Q ss_pred ECCCCcC
Q 018826 251 TLNHNSL 257 (350)
Q Consensus 251 ~l~~n~i 257 (350)
.+.+-..
T Consensus 182 ~l~~l~~ 188 (221)
T KOG3864|consen 182 HLYDLPY 188 (221)
T ss_pred HhcCchh
Confidence 6665443
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.52 E-value=0.024 Score=46.61 Aligned_cols=60 Identities=17% Similarity=0.170 Sum_probs=28.0
Q ss_pred CCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcC
Q 018826 196 LSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSL 257 (350)
Q Consensus 196 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i 257 (350)
++.+..++++.|++. ..|..+.....+..+++.+|..+ ..|.++...+.++.++..++.+
T Consensus 64 ~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 64 LTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred HHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcc
Confidence 334444444444443 34444444444444444444444 4444444445555555444443
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.94 E-value=0.018 Score=47.38 Aligned_cols=88 Identities=20% Similarity=0.225 Sum_probs=71.9
Q ss_pred ccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccCchhhcccCCC
Q 018826 192 ELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLL 271 (350)
Q Consensus 192 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L 271 (350)
.+......+.|+++.|++- .....|+.++.+..|+++.|++. ..|..+.....++.+++..|... ..|.++...+.+
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 3455567788888888776 33445667778899999999998 78888888888889999999888 678899999999
Q ss_pred CEEEccccccc
Q 018826 272 QNLDLSHNNLS 282 (350)
Q Consensus 272 ~~L~l~~N~i~ 282 (350)
+++++.+|.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 99999999765
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=82.55 E-value=0.44 Score=25.04 Aligned_cols=18 Identities=39% Similarity=0.431 Sum_probs=10.2
Q ss_pred CCCCEEEccccccccccC
Q 018826 269 LLLQNLDLSHNNLSGTIT 286 (350)
Q Consensus 269 ~~L~~L~l~~N~i~~~~p 286 (350)
++|++|||++|.|+....
T Consensus 2 ~~L~~LdL~~N~i~~~G~ 19 (28)
T smart00368 2 PSLRELDLSNNKLGDEGA 19 (28)
T ss_pred CccCEEECCCCCCCHHHH
Confidence 356666666666654443
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=76.06 E-value=2.4 Score=21.85 Aligned_cols=15 Identities=40% Similarity=0.552 Sum_probs=11.8
Q ss_pred CCCCEEEcccccccc
Q 018826 269 LLLQNLDLSHNNLSG 283 (350)
Q Consensus 269 ~~L~~L~l~~N~i~~ 283 (350)
.+|+.|++++|+|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 578888888888863
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=73.54 E-value=1.4 Score=41.12 Aligned_cols=63 Identities=29% Similarity=0.301 Sum_probs=40.4
Q ss_pred CCCCCCEEECCCCcCccc--cchhhhCCCCCCEEEccCC--ccccc-CCccccCCCCCCEEECCCCcCc
Q 018826 195 KLSQLKNLNISSNLLSGQ--IPSAIGKLFNLKYLDLSKN--KLGGS-IPTEIGNCSELKNLTLNHNSLD 258 (350)
Q Consensus 195 ~~~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n--~i~~~-~~~~~~~~~~L~~L~l~~n~i~ 258 (350)
+.+.+..+.|++|++... ..+.-+..|+|+.|+|++| .+... ....+. ...|++|-+.||.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k-~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLK-GLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhc-CCCHHHeeecCCccc
Confidence 456778888888877643 2223345788999999988 44321 111222 356788999999885
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=70.96 E-value=3.5 Score=21.24 Aligned_cols=13 Identities=38% Similarity=0.634 Sum_probs=6.2
Q ss_pred CCCEEECCCCcCc
Q 018826 246 ELKNLTLNHNSLD 258 (350)
Q Consensus 246 ~L~~L~l~~n~i~ 258 (350)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3444444444444
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=51.94 E-value=7.2 Score=36.71 Aligned_cols=64 Identities=28% Similarity=0.319 Sum_probs=43.7
Q ss_pred hCCCCCCEEEccCCccccc--CCccccCCCCCCEEECCCC--cCcccCchhhcc--cCCCCEEEcccccccc
Q 018826 218 GKLFNLKYLDLSKNKLGGS--IPTEIGNCSELKNLTLNHN--SLDGTIRPEMGE--ILLLQNLDLSHNNLSG 283 (350)
Q Consensus 218 ~~~~~L~~L~l~~n~i~~~--~~~~~~~~~~L~~L~l~~n--~i~~~~~~~~~~--~~~L~~L~l~~N~i~~ 283 (350)
...+.+..+.|++|++-.. +...-...|+|++|+|++| .+. ....+.+ ...|++|-+.+|++..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCcccc
Confidence 3567888999999998642 1111233599999999999 443 2223333 3568899999998864
No 90
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=49.80 E-value=13 Score=18.81 Aligned_cols=12 Identities=25% Similarity=0.448 Sum_probs=6.7
Q ss_pred CCCCEEECCCCc
Q 018826 245 SELKNLTLNHNS 256 (350)
Q Consensus 245 ~~L~~L~l~~n~ 256 (350)
++|+.|++++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 455555555553
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=27.20 E-value=42 Score=38.44 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=28.0
Q ss_pred EccCCcccccCCccccCCCCCCEEECCCCcCcc
Q 018826 227 DLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDG 259 (350)
Q Consensus 227 ~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~ 259 (350)
||++|+|+...+..|..+++|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 578999996666788889999999999998863
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.48 E-value=61 Score=37.26 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=27.6
Q ss_pred EccCCcCCCCCCcccCCCCCCCEEEccCCcCC
Q 018826 35 DLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLT 66 (350)
Q Consensus 35 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 66 (350)
||++|.|+.+.++.|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57889998888888889999999999998776
Done!