Query 018826
Match_columns 350
No_of_seqs 267 out of 3675
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 06:39:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018826.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018826hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2E-42 6.8E-47 339.9 26.9 327 15-349 353-758 (768)
2 3rgz_A Protein brassinosteroid 100.0 4.8E-40 1.6E-44 323.0 24.3 324 6-330 294-723 (768)
3 3v47_A TOLL-like receptor 5B a 100.0 1.1E-37 3.9E-42 288.8 20.5 314 12-325 37-410 (455)
4 2id5_A Lingo-1, leucine rich r 100.0 2.2E-37 7.5E-42 288.7 21.6 296 29-324 32-334 (477)
5 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-36 3.7E-41 292.2 26.4 178 147-326 374-561 (606)
6 2id5_A Lingo-1, leucine rich r 100.0 1.5E-36 5.3E-41 282.9 25.9 317 11-327 38-360 (477)
7 3t6q_A CD180 antigen; protein- 100.0 2.8E-36 9.5E-41 289.4 23.3 295 30-325 255-562 (606)
8 3v47_A TOLL-like receptor 5B a 100.0 1.9E-35 6.7E-40 273.9 22.1 306 2-307 50-413 (455)
9 1ziw_A TOLL-like receptor 3; i 100.0 1.6E-34 5.6E-39 280.6 28.7 312 14-325 257-624 (680)
10 4eco_A Uncharacterized protein 100.0 3.4E-35 1.2E-39 282.5 22.1 317 4-327 204-604 (636)
11 3t6q_A CD180 antigen; protein- 100.0 5.2E-34 1.8E-38 273.6 30.2 293 12-305 40-416 (606)
12 4eco_A Uncharacterized protein 100.0 1.1E-35 3.7E-40 286.0 18.2 295 4-304 247-602 (636)
13 3j0a_A TOLL-like receptor 5; m 100.0 2.4E-35 8.2E-40 292.4 19.5 207 120-326 285-563 (844)
14 2z7x_B TOLL-like receptor 1, v 100.0 7.6E-35 2.6E-39 274.4 21.1 152 170-325 321-483 (520)
15 3vq2_A TLR4, TOLL-like recepto 100.0 2.8E-34 9.6E-39 275.4 25.0 153 169-322 372-533 (606)
16 2z63_A TOLL-like receptor 4, v 100.0 3.1E-34 1.1E-38 273.1 23.7 154 171-325 371-533 (570)
17 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.4E-33 4.9E-38 268.0 26.8 152 170-325 350-512 (562)
18 4g8a_A TOLL-like receptor 4; l 100.0 1.5E-33 5E-38 271.5 26.7 315 11-325 58-582 (635)
19 3oja_B Anopheles plasmodium-re 100.0 5.2E-34 1.8E-38 272.6 21.4 304 14-326 60-383 (597)
20 3o6n_A APL1; leucine-rich repe 100.0 2E-33 6.7E-38 255.3 23.3 292 18-324 57-353 (390)
21 1ogq_A PGIP-2, polygalacturona 100.0 7.7E-34 2.6E-38 250.0 19.8 254 53-326 50-307 (313)
22 4ecn_A Leucine-rich repeat pro 100.0 1.2E-33 3.9E-38 277.3 22.6 311 4-322 446-839 (876)
23 2z81_A CD282 antigen, TOLL-lik 100.0 1.7E-33 5.9E-38 266.8 22.2 311 11-325 32-512 (549)
24 4ecn_A Leucine-rich repeat pro 100.0 2.8E-33 9.7E-38 274.5 22.7 238 14-258 434-710 (876)
25 1ogq_A PGIP-2, polygalacturona 100.0 8.7E-34 3E-38 249.7 17.1 253 29-284 50-307 (313)
26 2z63_A TOLL-like receptor 4, v 100.0 1.2E-32 4E-37 262.3 26.0 309 11-321 34-505 (570)
27 3o6n_A APL1; leucine-rich repe 100.0 7.3E-33 2.5E-37 251.5 23.2 281 27-322 43-330 (390)
28 2z7x_B TOLL-like receptor 1, v 100.0 5.8E-33 2E-37 261.5 22.6 299 14-322 9-456 (520)
29 3j0a_A TOLL-like receptor 5; m 100.0 8.3E-33 2.8E-37 274.2 24.3 307 11-320 30-411 (844)
30 1ziw_A TOLL-like receptor 3; i 100.0 2.4E-32 8.1E-37 265.4 26.9 269 12-280 32-364 (680)
31 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.8E-32 6E-37 260.5 24.8 299 14-322 40-485 (562)
32 1xku_A Decorin; proteoglycan, 100.0 1.6E-31 5.6E-36 237.1 28.0 281 30-320 32-329 (330)
33 4fmz_A Internalin; leucine ric 100.0 1.3E-31 4.5E-36 239.5 26.1 296 6-321 44-344 (347)
34 2z81_A CD282 antigen, TOLL-lik 100.0 1.4E-32 4.9E-37 260.5 20.3 167 19-187 18-210 (549)
35 3oja_B Anopheles plasmodium-re 100.0 4E-32 1.4E-36 259.6 23.4 290 27-326 49-361 (597)
36 2ft3_A Biglycan; proteoglycan, 100.0 2.7E-31 9.2E-36 236.0 24.1 280 30-320 34-330 (332)
37 1xku_A Decorin; proteoglycan, 100.0 6.5E-31 2.2E-35 233.3 26.4 272 20-300 45-330 (330)
38 2ft3_A Biglycan; proteoglycan, 100.0 1.9E-31 6.4E-36 237.0 22.8 260 20-289 47-316 (332)
39 4fmz_A Internalin; leucine ric 100.0 2.6E-30 8.9E-35 231.0 28.5 278 4-302 64-346 (347)
40 1o6v_A Internalin A; bacterial 100.0 9.8E-30 3.4E-34 236.2 27.8 142 169-320 239-385 (466)
41 2z66_A Variable lymphocyte rec 100.0 2.4E-30 8.1E-35 227.2 21.3 278 32-313 10-298 (306)
42 1o6v_A Internalin A; bacterial 100.0 2.2E-29 7.7E-34 233.7 27.4 191 97-303 195-389 (466)
43 2z66_A Variable lymphocyte rec 100.0 9.1E-30 3.1E-34 223.5 20.2 271 18-291 19-296 (306)
44 3zyi_A Leucine-rich repeat-con 100.0 4.7E-29 1.6E-33 230.7 25.4 247 31-282 56-303 (452)
45 3zyj_A Leucine-rich repeat-con 100.0 6.3E-29 2.2E-33 229.1 25.1 248 30-282 44-292 (440)
46 2z80_A TOLL-like receptor 2, v 100.0 1.4E-30 4.9E-35 233.2 13.7 258 29-286 52-318 (353)
47 1ozn_A Reticulon 4 receptor; N 100.0 5.2E-29 1.8E-33 216.5 22.1 251 32-309 14-268 (285)
48 1ozn_A Reticulon 4 receptor; N 100.0 2.6E-29 8.9E-34 218.3 20.2 248 16-290 21-269 (285)
49 3bz5_A Internalin-J, INLJ; leu 100.0 1.2E-28 4E-33 227.7 25.3 189 24-235 59-247 (457)
50 3zyi_A Leucine-rich repeat-con 100.0 1.1E-28 3.8E-33 228.2 24.1 238 18-259 66-304 (452)
51 4g8a_A TOLL-like receptor 4; l 100.0 3.5E-28 1.2E-32 234.0 27.7 301 2-302 72-580 (635)
52 3zyj_A Leucine-rich repeat-con 100.0 1.7E-28 5.7E-33 226.2 24.2 240 16-259 53-293 (440)
53 3bz5_A Internalin-J, INLJ; leu 100.0 3.8E-28 1.3E-32 224.2 25.3 267 18-309 31-306 (457)
54 2z80_A TOLL-like receptor 2, v 100.0 2.7E-29 9.3E-34 224.9 15.7 277 26-306 28-318 (353)
55 4fcg_A Uncharacterized protein 100.0 4.6E-28 1.6E-32 214.4 20.8 235 28-282 80-314 (328)
56 4fcg_A Uncharacterized protein 100.0 4.6E-28 1.6E-32 214.5 20.0 222 53-294 81-302 (328)
57 3o53_A Protein LRIM1, AGAP0063 100.0 1.4E-29 4.9E-34 223.3 8.7 243 23-279 28-272 (317)
58 3o53_A Protein LRIM1, AGAP0063 100.0 3.9E-29 1.3E-33 220.5 7.2 266 30-309 11-283 (317)
59 1wwl_A Monocyte differentiatio 100.0 2.2E-29 7.4E-34 221.6 4.0 246 28-283 42-310 (312)
60 3oja_A Leucine-rich immune mol 99.9 2E-27 6.7E-32 221.3 12.3 238 26-277 31-270 (487)
61 1z7x_W Ribonuclease inhibitor; 99.9 5.4E-30 1.8E-34 237.7 -5.4 309 14-322 37-410 (461)
62 1jl5_A Outer protein YOPM; leu 99.9 2.2E-25 7.5E-30 205.6 24.3 220 78-321 132-368 (454)
63 1jl5_A Outer protein YOPM; leu 99.9 3.9E-26 1.3E-30 210.6 18.8 249 7-283 12-291 (454)
64 1wwl_A Monocyte differentiatio 99.9 1.1E-27 3.7E-32 210.7 7.8 246 48-303 38-310 (312)
65 2z62_A TOLL-like receptor 4, v 99.9 1.3E-25 4.4E-30 194.1 20.4 209 53-286 28-241 (276)
66 2z62_A TOLL-like receptor 4, v 99.9 2E-25 6.9E-30 192.9 19.6 218 19-260 20-239 (276)
67 1z7x_W Ribonuclease inhibitor; 99.9 3.5E-28 1.2E-32 225.4 0.4 316 6-321 56-438 (461)
68 3oja_A Leucine-rich immune mol 99.9 4.4E-26 1.5E-30 212.2 14.0 226 51-290 32-259 (487)
69 2o6q_A Variable lymphocyte rec 99.9 2.3E-24 7.8E-29 185.6 22.8 203 54-283 17-219 (270)
70 2o6q_A Variable lymphocyte rec 99.9 3E-24 1E-28 184.8 22.9 204 29-259 16-219 (270)
71 3g06_A SSPH2 (leucine-rich rep 99.9 7.2E-24 2.5E-28 201.6 26.8 254 12-309 47-304 (622)
72 1p9a_G Platelet glycoprotein I 99.9 1.2E-24 4E-29 189.1 18.7 203 73-282 6-208 (290)
73 3rfs_A Internalin B, repeat mo 99.9 5.3E-25 1.8E-29 189.8 16.0 204 76-290 40-243 (272)
74 3goz_A Leucine-rich repeat-con 99.9 3.2E-26 1.1E-30 205.6 6.8 257 13-289 6-304 (362)
75 3rfs_A Internalin B, repeat mo 99.9 2.5E-24 8.4E-29 185.6 17.8 227 78-314 20-247 (272)
76 1p9a_G Platelet glycoprotein I 99.9 9.7E-24 3.3E-28 183.3 21.6 204 49-259 6-209 (290)
77 3g06_A SSPH2 (leucine-rich rep 99.9 7.8E-23 2.7E-27 194.4 27.2 254 29-323 40-297 (622)
78 2ast_B S-phase kinase-associat 99.9 1E-24 3.5E-29 193.7 11.2 252 54-310 48-314 (336)
79 2ca6_A RAN GTPase-activating p 99.9 9.5E-26 3.2E-30 204.3 3.7 239 48-286 27-320 (386)
80 2ast_B S-phase kinase-associat 99.9 6.1E-25 2.1E-29 195.2 6.6 255 30-291 48-315 (336)
81 2xwt_C Thyrotropin receptor; s 99.9 1.7E-23 5.9E-28 176.8 14.6 196 54-279 32-236 (239)
82 3goz_A Leucine-rich repeat-con 99.9 3.7E-25 1.3E-29 198.7 4.2 236 8-263 24-302 (362)
83 2xwt_C Thyrotropin receptor; s 99.9 4.3E-23 1.5E-27 174.4 16.4 187 18-210 23-218 (239)
84 2ca6_A RAN GTPase-activating p 99.9 2.3E-25 8E-30 201.8 2.0 263 16-278 19-339 (386)
85 4glp_A Monocyte differentiatio 99.9 1.5E-23 5.2E-28 184.1 11.7 226 53-283 64-308 (310)
86 3m19_A Variable lymphocyte rec 99.9 5.8E-22 2E-26 168.6 19.5 180 78-284 15-194 (251)
87 1h6u_A Internalin H; cell adhe 99.9 2.7E-22 9.2E-27 175.9 17.3 193 50-258 38-230 (308)
88 4glp_A Monocyte differentiatio 99.9 3.6E-22 1.2E-26 175.4 16.3 225 29-259 64-308 (310)
89 3m19_A Variable lymphocyte rec 99.9 1.7E-21 5.7E-26 165.8 19.8 181 53-260 14-194 (251)
90 1h6u_A Internalin H; cell adhe 99.9 1.1E-21 3.8E-26 171.9 19.1 198 25-239 37-234 (308)
91 4ay9_X Follicle-stimulating ho 99.9 8.4E-21 2.9E-25 169.4 18.9 240 32-279 12-256 (350)
92 2o6s_A Variable lymphocyte rec 99.9 5.8E-21 2E-25 157.7 15.8 165 126-297 29-193 (208)
93 4ay9_X Follicle-stimulating ho 99.8 3.6E-20 1.2E-24 165.3 17.2 230 20-256 23-257 (350)
94 2o6s_A Variable lymphocyte rec 99.8 3.1E-20 1.1E-24 153.3 15.0 162 102-270 29-190 (208)
95 3ogk_B Coronatine-insensitive 99.8 8.6E-22 2.9E-26 188.1 2.8 268 20-290 211-534 (592)
96 3ogk_B Coronatine-insensitive 99.8 9.3E-23 3.2E-27 194.8 -5.2 113 172-284 377-503 (592)
97 3cvr_A Invasion plasmid antige 99.8 2.2E-19 7.6E-24 168.8 15.5 188 78-293 60-254 (571)
98 1h6t_A Internalin B; cell adhe 99.8 5E-19 1.7E-23 153.7 16.4 171 75-283 44-214 (291)
99 1h6t_A Internalin B; cell adhe 99.8 2.7E-19 9.2E-24 155.4 13.7 186 33-234 28-213 (291)
100 1m9s_A Internalin B; cell inva 99.8 6.9E-19 2.4E-23 167.1 16.6 191 30-236 22-212 (605)
101 2xot_A Amphoterin-induced prot 99.8 7.5E-19 2.6E-23 157.4 15.1 176 80-258 21-202 (361)
102 2v9t_B SLIT homolog 2 protein 99.8 1.6E-18 5.3E-23 144.3 16.0 133 150-282 33-165 (220)
103 3sb4_A Hypothetical leucine ri 99.8 2.2E-19 7.7E-24 158.8 11.5 239 28-276 48-328 (329)
104 4fdw_A Leucine rich hypothetic 99.8 8.1E-18 2.8E-22 152.2 21.7 242 29-283 113-359 (401)
105 2v70_A SLIT-2, SLIT homolog 2 99.8 2.1E-18 7E-23 143.5 16.2 136 151-286 34-170 (220)
106 3cvr_A Invasion plasmid antige 99.8 2.1E-18 7E-23 162.2 17.5 188 54-269 60-254 (571)
107 1m9s_A Internalin B; cell inva 99.8 9.1E-19 3.1E-23 166.3 14.4 190 55-260 23-212 (605)
108 4ezg_A Putative uncharacterize 99.8 2.1E-18 7.3E-23 141.0 14.3 154 122-283 41-195 (197)
109 2v9t_B SLIT homolog 2 protein 99.8 3.5E-18 1.2E-22 142.1 15.6 135 125-259 32-166 (220)
110 2xot_A Amphoterin-induced prot 99.8 1.6E-18 5.4E-23 155.3 14.3 176 32-210 21-202 (361)
111 3e6j_A Variable lymphocyte rec 99.8 6E-18 2.1E-22 141.6 16.6 135 149-284 40-174 (229)
112 2v70_A SLIT-2, SLIT homolog 2 99.8 5.8E-18 2E-22 140.8 15.6 134 127-260 34-168 (220)
113 1w8a_A SLIT protein; signaling 99.8 8.4E-18 2.9E-22 136.8 15.1 171 152-325 11-185 (192)
114 3sb4_A Hypothetical leucine ri 99.8 1.8E-19 6.3E-24 159.4 4.2 255 28-292 24-320 (329)
115 3e6j_A Variable lymphocyte rec 99.8 3.2E-17 1.1E-21 137.2 17.2 136 125-261 40-175 (229)
116 4fdw_A Leucine rich hypothetic 99.8 1.3E-16 4.3E-21 144.4 22.0 256 15-282 122-383 (401)
117 2p1m_B Transport inhibitor res 99.8 4.1E-21 1.4E-25 183.5 -7.9 78 243-321 430-517 (594)
118 1xeu_A Internalin C; cellular 99.7 5.3E-18 1.8E-22 145.0 11.5 168 76-258 18-185 (263)
119 2p1m_B Transport inhibitor res 99.7 5.6E-20 1.9E-24 175.6 -1.3 113 172-285 371-497 (594)
120 4ezg_A Putative uncharacterize 99.7 2.9E-17 9.8E-22 134.2 13.3 109 122-234 85-194 (197)
121 1xeu_A Internalin C; cellular 99.7 8.9E-18 3E-22 143.6 9.4 167 53-234 19-185 (263)
122 1dce_A Protein (RAB geranylger 99.7 3.2E-20 1.1E-24 175.2 -6.7 189 75-286 347-550 (567)
123 1dce_A Protein (RAB geranylger 99.7 1.6E-19 5.4E-24 170.5 -7.5 105 151-260 443-548 (567)
124 2ell_A Acidic leucine-rich nuc 99.7 1.9E-16 6.5E-21 125.9 11.4 134 148-283 23-161 (168)
125 2je0_A Acidic leucine-rich nuc 99.7 3.6E-16 1.2E-20 121.7 10.5 129 148-278 16-149 (149)
126 2o6r_A Variable lymphocyte rec 99.7 1.6E-15 5.5E-20 121.6 14.1 133 151-286 9-141 (177)
127 1w8a_A SLIT protein; signaling 99.7 8.5E-16 2.9E-20 124.9 11.7 113 150-262 30-143 (192)
128 2ell_A Acidic leucine-rich nuc 99.6 8.4E-16 2.9E-20 122.1 11.1 131 29-161 24-159 (168)
129 2wfh_A SLIT homolog 2 protein 99.6 2.6E-15 9E-20 122.0 13.9 128 152-283 13-140 (193)
130 4b8c_D Glucose-repressible alc 99.6 1E-16 3.4E-21 155.9 6.3 186 101-292 173-364 (727)
131 4b8c_D Glucose-repressible alc 99.6 1.5E-16 5E-21 154.7 5.9 181 92-282 215-404 (727)
132 2je0_A Acidic leucine-rich nuc 99.6 1.1E-15 3.6E-20 119.0 9.6 128 28-157 16-148 (149)
133 2wfh_A SLIT homolog 2 protein 99.6 1.1E-14 3.8E-19 118.3 14.3 127 32-162 13-139 (193)
134 1a9n_A U2A', U2A'; complex (nu 99.6 2.9E-15 1E-19 120.0 10.0 135 145-283 15-154 (176)
135 2o6r_A Variable lymphocyte rec 99.6 1.9E-14 6.4E-19 115.3 14.1 132 128-262 10-141 (177)
136 4fs7_A Uncharacterized protein 99.6 7.2E-14 2.5E-18 126.5 18.7 263 17-290 59-363 (394)
137 4fs7_A Uncharacterized protein 99.6 3.9E-13 1.3E-17 121.7 20.3 242 41-292 59-342 (394)
138 1a9n_A U2A', U2A'; complex (nu 99.5 2E-14 6.7E-19 115.1 9.0 132 25-160 15-151 (176)
139 3g39_A Variable lymphocyte rec 99.5 2.3E-13 7.9E-18 108.1 12.2 107 175-284 11-117 (170)
140 4gt6_A Cell surface protein; l 99.5 6.1E-12 2.1E-16 113.8 22.2 109 23-134 57-169 (394)
141 4gt6_A Cell surface protein; l 99.5 7.8E-12 2.7E-16 113.1 22.2 252 21-281 79-369 (394)
142 2r9u_A Variable lymphocyte rec 99.5 4.8E-13 1.7E-17 106.6 12.2 105 176-283 15-119 (174)
143 3g39_A Variable lymphocyte rec 99.4 1.3E-12 4.4E-17 103.8 12.3 108 151-261 11-118 (170)
144 1ds9_A Outer arm dynein; leuci 99.4 1.1E-15 3.7E-20 124.9 -6.8 109 169-282 66-185 (198)
145 1ds9_A Outer arm dynein; leuci 99.4 2.3E-15 7.7E-20 123.0 -4.9 110 72-186 43-153 (198)
146 3un9_A NLR family member X1; l 99.4 1.9E-14 6.5E-19 128.9 0.6 169 101-289 72-259 (372)
147 2r9u_A Variable lymphocyte rec 99.4 2.4E-12 8E-17 102.6 12.2 107 151-260 14-120 (174)
148 4h09_A Hypothetical leucine ri 99.4 1.1E-10 3.6E-15 105.1 22.6 121 167-291 211-331 (379)
149 3un9_A NLR family member X1; l 99.4 4.5E-14 1.6E-18 126.4 -0.2 160 76-235 71-253 (372)
150 2ifg_A High affinity nerve gro 99.2 3E-11 1E-15 107.3 11.1 104 153-259 12-117 (347)
151 2ifg_A High affinity nerve gro 99.2 1.3E-10 4.5E-15 103.1 11.8 102 130-234 13-116 (347)
152 4h09_A Hypothetical leucine ri 99.2 3.1E-09 1.1E-13 95.4 20.8 266 14-291 54-354 (379)
153 2ra8_A Uncharacterized protein 98.9 1E-09 3.4E-14 97.5 6.0 84 171-256 250-341 (362)
154 2ra8_A Uncharacterized protein 98.9 1.4E-09 4.8E-14 96.6 6.8 85 195-280 250-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.7 7.8E-09 2.7E-13 82.9 3.6 116 168-283 31-165 (185)
156 1io0_A Tropomodulin; LRR prote 98.5 1.8E-08 6.1E-13 80.8 1.6 114 145-258 32-164 (185)
157 3e4g_A ATP synthase subunit S, 98.3 1.9E-07 6.4E-12 73.3 2.5 84 173-256 61-150 (176)
158 3rw6_A Nuclear RNA export fact 98.3 1.2E-06 3.9E-11 74.0 6.9 80 195-275 168-257 (267)
159 3e4g_A ATP synthase subunit S, 98.3 2.8E-07 9.5E-12 72.3 2.7 87 197-283 61-154 (176)
160 3rw6_A Nuclear RNA export fact 98.2 1.2E-06 4E-11 74.0 4.3 67 218-286 167-237 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.7 3.1E-05 1.1E-09 61.8 4.5 113 170-282 38-170 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.4 8.6E-05 2.9E-09 59.3 2.8 111 147-257 39-169 (197)
163 3rfe_A Platelet glycoprotein I 97.1 0.0015 5.1E-08 48.5 7.0 37 222-258 32-68 (130)
164 3rfe_A Platelet glycoprotein I 96.5 0.0046 1.6E-07 45.8 5.9 56 225-282 12-68 (130)
165 2lz0_A Uncharacterized protein 86.0 2.4 8.2E-05 29.3 6.3 46 40-86 7-52 (100)
166 2lz0_A Uncharacterized protein 84.6 1.2 4.2E-05 30.8 4.2 42 212-254 11-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2e-42 Score=339.87 Aligned_cols=327 Identities=38% Similarity=0.569 Sum_probs=265.8
Q ss_pred CcceecCCcccCCCC-CcCEEEccCCcCCCCCCcccCC--CCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccC
Q 018826 15 TENTCTIPKEIGSLR-NLEVLDLVSNNLNGTIPKEIGT--LRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGG 91 (350)
Q Consensus 15 ~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~--l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~ 91 (350)
|.+++.+|..+.+++ +|++|++++|.+++..+..+.. +++|++|++++|.+++..|..+.++++|++|++++|.+.+
T Consensus 353 n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 432 (768)
T 3rgz_A 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432 (768)
T ss_dssp SEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred CccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC
Confidence 333344444443333 4444444444444333333333 5677788888887777778888888999999999998888
Q ss_pred CCCccccCCCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccC
Q 018826 92 PIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGN 171 (350)
Q Consensus 92 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~ 171 (350)
..|..+..+++|+.|++.+|.+.+..|..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..|.++..
T Consensus 433 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~ 512 (768)
T 3rgz_A 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred cccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc
Confidence 88888888999999999999998888888989999999999999998877888899999999999999998888999999
Q ss_pred CCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhh----------------------------------
Q 018826 172 LSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAI---------------------------------- 217 (350)
Q Consensus 172 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~---------------------------------- 217 (350)
+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++.+|..+
T Consensus 513 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (768)
T 3rgz_A 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592 (768)
T ss_dssp CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEE
T ss_pred CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccc
Confidence 9999999999999998889899999999999999998876665433
Q ss_pred ------------------------------------hCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccC
Q 018826 218 ------------------------------------GKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTI 261 (350)
Q Consensus 218 ------------------------------------~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 261 (350)
..+++|+.|++++|++++.+|..+..++.|+.|++++|++++.+
T Consensus 593 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 672 (768)
T 3rgz_A 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672 (768)
T ss_dssp EEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred ccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCC
Confidence 23567999999999999999999999999999999999999999
Q ss_pred chhhcccCCCCEEEccccccccccCCccccccc----CCCCCcceecCCCCC--CCCCCcccCCCCCCcccCCCCccccc
Q 018826 262 RPEMGEILLLQNLDLSHNNLSGTITKTLCPMHS----DMSFNRLEGEIPSNL--RDNPPKSFAGNTGLCGHVEELPRMEM 335 (350)
Q Consensus 262 ~~~~~~~~~L~~L~l~~N~i~~~~p~~~~~~~~----~l~~N~l~~~ip~~~--~~~~~~~~~~n~~~~~~~~~~~~~~~ 335 (350)
|..+..+++|+.||+++|+++|.+|..+..+.. ++++|+++|.+|+.. ..++..++.|||.+||... +
T Consensus 673 p~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l--~---- 746 (768)
T 3rgz_A 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL--P---- 746 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTS--C----
T ss_pred ChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCC--c----
Confidence 999999999999999999999999999988765 999999999999875 7888899999999998532 1
Q ss_pred cccccceeeeeeec
Q 018826 336 CFRCGIMVVKFYMK 349 (350)
Q Consensus 336 c~~c~~~~~~~~~~ 349 (350)
.|...-...|.+
T Consensus 747 --~C~~~~~~~~~~ 758 (768)
T 3rgz_A 747 --RCDPSNADGYAH 758 (768)
T ss_dssp --CCCSCC------
T ss_pred --CCCCCccCCCCC
Confidence 366665555554
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.8e-40 Score=322.97 Aligned_cols=324 Identities=34% Similarity=0.518 Sum_probs=259.9
Q ss_pred ccccc-cCCCCcceecCCcccCCCCCcCEEEccCCcCCCCCCcc-cCCCCCCCEEEccCCcCCCCcchhccC--------
Q 018826 6 HQGQD-IQPYTENTCTIPKEIGSLRNLEVLDLVSNNLNGTIPKE-IGTLRNLMGLHLSSNNLTGELPQEIEN-------- 75 (350)
Q Consensus 6 ~~~~~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~i~~~~~~~~~~-------- 75 (350)
+.++. -+.+|.+++.+|..|.++++|++|++++|.+++..|.. +..+++|++|++++|.+.+..|..+..
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L 373 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEE
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEE
Confidence 34444 34456666666666666677777777666665444433 566666666666666655444443333
Q ss_pred -------------------CCCCcEEecccccccCCCCccccCCCCCcEEEccCCccccccCccccCCCCCCEEEcccCc
Q 018826 76 -------------------LKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNK 136 (350)
Q Consensus 76 -------------------l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 136 (350)
+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 374 ~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~ 453 (768)
T 3rgz_A 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453 (768)
T ss_dssp ECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred EccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCc
Confidence 4567777777777766777778888888888888888888888888888888888888888
Q ss_pred cccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchh
Q 018826 137 LTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSA 216 (350)
Q Consensus 137 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 216 (350)
+....+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|.++..+++|+.|++++|.+++..|..
T Consensus 454 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 533 (768)
T 3rgz_A 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG
T ss_pred ccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH
Confidence 88777788888899999999999988888888999999999999999998888888999999999999999999889999
Q ss_pred hhCCCCCCEEEccCCcccccCCcc--------------------------------------------------------
Q 018826 217 IGKLFNLKYLDLSKNKLGGSIPTE-------------------------------------------------------- 240 (350)
Q Consensus 217 ~~~~~~L~~L~l~~n~i~~~~~~~-------------------------------------------------------- 240 (350)
+..+++|+.|++++|.+++.+|..
T Consensus 534 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 613 (768)
T 3rgz_A 534 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613 (768)
T ss_dssp GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCS
T ss_pred HcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccc
Confidence 999999999999999887665543
Q ss_pred --------------ccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEccccccccccCCccccccc----CCCCCcce
Q 018826 241 --------------IGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTITKTLCPMHS----DMSFNRLE 302 (350)
Q Consensus 241 --------------~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p~~~~~~~~----~l~~N~l~ 302 (350)
+..+++|+.|++++|++++.+|..+..++.|+.|++++|+++|.+|..+..+.. |+++|+++
T Consensus 614 ~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~ 693 (768)
T 3rgz_A 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693 (768)
T ss_dssp CTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred ccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc
Confidence 333577899999999999999999999999999999999999999999988765 99999999
Q ss_pred ecCCCCC---CCCCCcccCCCCCCcccCCCC
Q 018826 303 GEIPSNL---RDNPPKSFAGNTGLCGHVEEL 330 (350)
Q Consensus 303 ~~ip~~~---~~~~~~~~~~n~~~~~~~~~~ 330 (350)
|.+|+.+ ..+..+++++| .+.|.+|..
T Consensus 694 g~ip~~l~~l~~L~~L~ls~N-~l~g~iP~~ 723 (768)
T 3rgz_A 694 GRIPQAMSALTMLTEIDLSNN-NLSGPIPEM 723 (768)
T ss_dssp ECCCGGGGGCCCCSEEECCSS-EEEEECCSS
T ss_pred CcCChHHhCCCCCCEEECcCC-cccccCCCc
Confidence 9999988 56788889999 677777754
No 3
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.1e-37 Score=288.85 Aligned_cols=314 Identities=19% Similarity=0.179 Sum_probs=216.8
Q ss_pred CCCCcceecCCcccCCCCCcCEEEccCCcCCC-CCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEeccccccc
Q 018826 12 QPYTENTCTIPKEIGSLRNLEVLDLVSNNLNG-TIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLG 90 (350)
Q Consensus 12 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~ 90 (350)
+.+|.+++..|..|.++++|++|++++|.+.+ ..+..|..+++|++|++++|.+.+..|..|.++++|++|++++|.+.
T Consensus 37 Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 116 (455)
T 3v47_A 37 LSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLD 116 (455)
T ss_dssp CCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCB
T ss_pred ecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCC
Confidence 44566666667777777777777777776653 33456677777777777777776666667777777777777777766
Q ss_pred CCCCc--cccCCCCCcEEEccCCccccccCcc-ccCCCCCCEEEcccCccccccchhhhcc--CCccEEecCCCccccCc
Q 018826 91 GPIPS--TLFRLTNLEVLYLGFNQFNGTIPRE-IGHLKNLTYLFIKVNKLTGAIRSTLGQL--TSLLQLDLSSNQLHSSI 165 (350)
Q Consensus 91 ~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~~--~~L~~L~l~~n~~~~~~ 165 (350)
+..+. .+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+....+..+..+ .+++.|++++|.+.+..
T Consensus 117 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~ 196 (455)
T 3v47_A 117 GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMN 196 (455)
T ss_dssp THHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCS
T ss_pred ccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccc
Confidence 53333 2666777777777777777655544 6667777777777777665555444443 34555555555444322
Q ss_pred ccc--------ccCCCCCCEEEccCCcccccCCccc-------------------------------------C--CCCC
Q 018826 166 PLE--------IGNLSALEELDLSDNKIHGIIPDEL-------------------------------------T--KLSQ 198 (350)
Q Consensus 166 ~~~--------l~~~~~L~~L~l~~n~~~~~~~~~~-------------------------------------~--~~~~ 198 (350)
+.. +...++|+.|++++|.+++..+..+ . ..++
T Consensus 197 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (455)
T 3v47_A 197 EYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASG 276 (455)
T ss_dssp TTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSC
T ss_pred hhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccC
Confidence 211 1233566777777766543222111 1 1257
Q ss_pred CCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEccc
Q 018826 199 LKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSH 278 (350)
Q Consensus 199 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~ 278 (350)
|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++
T Consensus 277 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 356 (455)
T 3v47_A 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY 356 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCS
T ss_pred ceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCC
Confidence 88888888888877888888888999999999988877777888888999999999998877778888888899999999
Q ss_pred cccccccCCccccccc----CCCCCcceecCCCCC---CCCCCcccCCCCCCcc
Q 018826 279 NNLSGTITKTLCPMHS----DMSFNRLEGEIPSNL---RDNPPKSFAGNTGLCG 325 (350)
Q Consensus 279 N~i~~~~p~~~~~~~~----~l~~N~l~~~ip~~~---~~~~~~~~~~n~~~~~ 325 (350)
|++++..|..+..+.. ++++|++++..+..+ ..+..+++.+||..|.
T Consensus 357 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 357 NHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence 9988888877776654 888888885444333 5777888889887773
No 4
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.2e-37 Score=288.65 Aligned_cols=296 Identities=23% Similarity=0.187 Sum_probs=141.6
Q ss_pred CCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcEEEc
Q 018826 29 RNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYL 108 (350)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 108 (350)
++++.|++++|.+++..+..|..+++|++|++++|.+.+..|..|.++++|++|++++|.+....+..|..+++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 34555555555555444444555555555555555555444445555555555555555554444344445555555555
Q ss_pred cCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCccccc
Q 018826 109 GFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGI 188 (350)
Q Consensus 109 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 188 (350)
++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 55555544444455555555555555555444444445555555555555555443334444555555555555555444
Q ss_pred CCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccCchhhccc
Q 018826 189 IPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEI 268 (350)
Q Consensus 189 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~ 268 (350)
.+..+..+++|+.|++++|...+..+.......+|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..+
T Consensus 192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (477)
T 2id5_A 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271 (477)
T ss_dssp CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTC
T ss_pred ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccc
Confidence 44444555555555555544333333333333345555555554442222334444455555555555444444444444
Q ss_pred CCCCEEEccccccccccCCccccccc----CCCCCcceecCCCCC---CCCCCcccCCCCCCc
Q 018826 269 LLLQNLDLSHNNLSGTITKTLCPMHS----DMSFNRLEGEIPSNL---RDNPPKSFAGNTGLC 324 (350)
Q Consensus 269 ~~L~~L~l~~N~i~~~~p~~~~~~~~----~l~~N~l~~~ip~~~---~~~~~~~~~~n~~~~ 324 (350)
++|+.|++++|++++..|..+..+.. ++++|++++..+..+ ..+..+.+.+||+.|
T Consensus 272 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp TTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred ccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 45555555555554444444433322 444444443222222 334444455554444
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.1e-36 Score=292.16 Aligned_cols=178 Identities=24% Similarity=0.249 Sum_probs=141.2
Q ss_pred ccCCccEEecCCCccccCccccccCCCCCCEEEccCCcccccCC-cccCCCCCCCEEECCCCcCccccchhhhCCCCCCE
Q 018826 147 QLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIP-DELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKY 225 (350)
Q Consensus 147 ~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 225 (350)
.+++|+.|++++|.+. ..+..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.+..|..+..+++|++
T Consensus 374 ~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 452 (606)
T 3vq2_A 374 GTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT 452 (606)
T ss_dssp CCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred cCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCE
Confidence 3344444444444443 233556667777777777777776555 56778888888888888888778888888999999
Q ss_pred EEccCCcccc-cCCccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEccccccccccCCccccccc----CCCCCc
Q 018826 226 LDLSKNKLGG-SIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTITKTLCPMHS----DMSFNR 300 (350)
Q Consensus 226 L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p~~~~~~~~----~l~~N~ 300 (350)
|++++|.+++ ..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++++.+|..+..+.. ++++|+
T Consensus 453 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred EECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence 9999999986 47888889999999999999999888888999999999999999999988888877654 999999
Q ss_pred ceecCCCCC---C-CCCCcccCCCCCCccc
Q 018826 301 LEGEIPSNL---R-DNPPKSFAGNTGLCGH 326 (350)
Q Consensus 301 l~~~ip~~~---~-~~~~~~~~~n~~~~~~ 326 (350)
++ .+|..+ . .+..+++.+||+.|..
T Consensus 533 l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 533 IE-TSKGILQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp CC-CEESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred Cc-ccCHhHhhhcccCcEEEccCCCcccCC
Confidence 99 788766 2 4788899999998843
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-36 Score=282.92 Aligned_cols=317 Identities=21% Similarity=0.167 Sum_probs=276.4
Q ss_pred cCCCCcceecCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEeccccccc
Q 018826 11 IQPYTENTCTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLG 90 (350)
Q Consensus 11 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~ 90 (350)
-+.+|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+....+..|.++++|++|++++|.+.
T Consensus 38 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~ 117 (477)
T 2id5_A 38 DLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117 (477)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCC
T ss_pred ECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccc
Confidence 35578888888899999999999999999999888999999999999999999999777777899999999999999999
Q ss_pred CCCCccccCCCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCcccccc
Q 018826 91 GPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIG 170 (350)
Q Consensus 91 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~ 170 (350)
+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.......+..+++|+.|++++|.+.+..+..+.
T Consensus 118 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~ 197 (477)
T 2id5_A 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFK 197 (477)
T ss_dssp EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSC
T ss_pred cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcc
Confidence 88888899999999999999999988888999999999999999999988878899999999999999999877777899
Q ss_pred CCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEE
Q 018826 171 NLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNL 250 (350)
Q Consensus 171 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L 250 (350)
.+++|+.|++++|...+..+.......+|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|
T Consensus 198 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 277 (477)
T 2id5_A 198 RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEI 277 (477)
T ss_dssp SCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEE
T ss_pred cCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEE
Confidence 99999999999988766666656666799999999999996666788999999999999999998777889999999999
Q ss_pred ECCCCcCcccCchhhcccCCCCEEEccccccccccCCccccccc----CCCCCcceecCCCCC--CCCCCcccCCCCCCc
Q 018826 251 TLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTITKTLCPMHS----DMSFNRLEGEIPSNL--RDNPPKSFAGNTGLC 324 (350)
Q Consensus 251 ~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p~~~~~~~~----~l~~N~l~~~ip~~~--~~~~~~~~~~n~~~~ 324 (350)
++++|++++..+..+..+++|+.|++++|++++..+..|..+.. ++++|.++...+..| .......+.+++..|
T Consensus 278 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C 357 (477)
T 2id5_A 278 QLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTC 357 (477)
T ss_dssp ECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBE
T ss_pred ECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCcee
Confidence 99999999888889999999999999999999877766655443 899998875433222 333445667777777
Q ss_pred ccC
Q 018826 325 GHV 327 (350)
Q Consensus 325 ~~~ 327 (350)
...
T Consensus 358 ~~p 360 (477)
T 2id5_A 358 ATP 360 (477)
T ss_dssp EES
T ss_pred CCc
Confidence 543
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.8e-36 Score=289.35 Aligned_cols=295 Identities=21% Similarity=0.254 Sum_probs=261.9
Q ss_pred CcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcEEEcc
Q 018826 30 NLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLG 109 (350)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 109 (350)
+|+.|+++++.+++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 6788889999998888888999999999999999998 677789999999999999999988778889999999999999
Q ss_pred CCccccccC-ccccCCCCCCEEEcccCcccccc--chhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCccc
Q 018826 110 FNQFNGTIP-REIGHLKNLTYLFIKVNKLTGAI--RSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIH 186 (350)
Q Consensus 110 ~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 186 (350)
+|.+.+..+ ..+..+++|++|++++|.+.... +..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 998875544 45889999999999999998765 567889999999999999988778888999999999999999998
Q ss_pred ccCCc-ccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCccccc---CCccccCCCCCCEEECCCCcCcccCc
Q 018826 187 GIIPD-ELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGS---IPTEIGNCSELKNLTLNHNSLDGTIR 262 (350)
Q Consensus 187 ~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~---~~~~~~~~~~L~~L~l~~n~i~~~~~ 262 (350)
+..+. .+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|++|++++|++++..+
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 493 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh
Confidence 76544 488999999999999999988888899999999999999999862 33568889999999999999998888
Q ss_pred hhhcccCCCCEEEccccccccccCCccccccc---CCCCCcceecCCCCC---CCCCCcccCCCCCCcc
Q 018826 263 PEMGEILLLQNLDLSHNNLSGTITKTLCPMHS---DMSFNRLEGEIPSNL---RDNPPKSFAGNTGLCG 325 (350)
Q Consensus 263 ~~~~~~~~L~~L~l~~N~i~~~~p~~~~~~~~---~l~~N~l~~~ip~~~---~~~~~~~~~~n~~~~~ 325 (350)
..+..+++|+.|++++|++++.+|..+..... ++++|++++..|..+ ..+..+++.+||+.|.
T Consensus 494 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSCEEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred hhhccccCCCEEECCCCccCcCChhHhCcccccEEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence 89999999999999999999999988877654 899999997777665 6889999999999884
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.9e-35 Score=273.86 Aligned_cols=306 Identities=23% Similarity=0.248 Sum_probs=242.0
Q ss_pred cccccccccc-CCCCcceecC-CcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchh--ccCCC
Q 018826 2 VYQFHQGQDI-QPYTENTCTI-PKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQE--IENLK 77 (350)
Q Consensus 2 ~~~~~~~~~~-~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~--~~~l~ 77 (350)
|.++..++.+ +.+|.+.+.+ +..|.++++|++|++++|.+++..+..+..+++|++|++++|.+.+..+.. |..++
T Consensus 50 ~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 129 (455)
T 3v47_A 50 FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT 129 (455)
T ss_dssp TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCT
T ss_pred hccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcc
Confidence 3455666663 4466676666 557899999999999999999888999999999999999999998755544 88999
Q ss_pred CCcEEecccccccCCCCcc-ccCCCCCcEEEccCCccccccCccccCC--CCCCEEEcccCccccccchh--------hh
Q 018826 78 SLIRLFVRNNTLGGPIPST-LFRLTNLEVLYLGFNQFNGTIPREIGHL--KNLTYLFIKVNKLTGAIRST--------LG 146 (350)
Q Consensus 78 ~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~l~~n~~~~~~~~~--------~~ 146 (350)
+|++|++++|.+.+..|.. +..+++|++|++++|.+.+..+..+..+ ++|+.+++++|.+....... +.
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~ 209 (455)
T 3v47_A 130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209 (455)
T ss_dssp TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTT
T ss_pred cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccc
Confidence 9999999999999877765 7889999999999999988777666554 45556666655554432211 12
Q ss_pred ccCCccEEecCCCccccCccccc-------------------------------------c--CCCCCCEEEccCCcccc
Q 018826 147 QLTSLLQLDLSSNQLHSSIPLEI-------------------------------------G--NLSALEELDLSDNKIHG 187 (350)
Q Consensus 147 ~~~~L~~L~l~~n~~~~~~~~~l-------------------------------------~--~~~~L~~L~l~~n~~~~ 187 (350)
.+++|+.|++++|.+.+..+..+ . ..++|+.|++++|.+.+
T Consensus 210 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 289 (455)
T 3v47_A 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA 289 (455)
T ss_dssp TTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE
T ss_pred ccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccc
Confidence 33455555555554432222111 0 12579999999999998
Q ss_pred cCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccCchhhcc
Q 018826 188 IIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGE 267 (350)
Q Consensus 188 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 267 (350)
..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..
T Consensus 290 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 369 (455)
T 3v47_A 290 LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG 369 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred cchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccc
Confidence 88888999999999999999999888888999999999999999998777888899999999999999999888888999
Q ss_pred cCCCCEEEccccccccccCCccccccc----CCCCCcceecCCC
Q 018826 268 ILLLQNLDLSHNNLSGTITKTLCPMHS----DMSFNRLEGEIPS 307 (350)
Q Consensus 268 ~~~L~~L~l~~N~i~~~~p~~~~~~~~----~l~~N~l~~~ip~ 307 (350)
+++|++|++++|++++..+..+..+.. ++++|.+++..|.
T Consensus 370 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 370 LPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 999999999999999877666655444 9999999988874
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.6e-34 Score=280.63 Aligned_cols=312 Identities=21% Similarity=0.207 Sum_probs=196.0
Q ss_pred CCcceecCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCC-----Ccc----hhccCCCCCcEEec
Q 018826 14 YTENTCTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTG-----ELP----QEIENLKSLIRLFV 84 (350)
Q Consensus 14 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-----~~~----~~~~~l~~L~~L~l 84 (350)
+|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|+++++...+ .+| ..|..+++|++|++
T Consensus 257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l 336 (680)
T 1ziw_A 257 YNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM 336 (680)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEEC
T ss_pred CCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEEC
Confidence 344444444555555555555555555544444444444444444444332211 011 13444555555555
Q ss_pred ccccccCCCCccccCCCCCcEEEccCC----------------------------ccccccCccccCCCCCCEEEcccCc
Q 018826 85 RNNTLGGPIPSTLFRLTNLEVLYLGFN----------------------------QFNGTIPREIGHLKNLTYLFIKVNK 136 (350)
Q Consensus 85 ~~n~~~~~~~~~~~~l~~L~~L~l~~n----------------------------~l~~~~~~~l~~l~~L~~L~l~~n~ 136 (350)
++|.+.+..+..|..+++|++|++++| .+.+..+..+..+++|++|++++|.
T Consensus 337 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 416 (680)
T 1ziw_A 337 EDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416 (680)
T ss_dssp CSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCc
Confidence 555555555555555555555555443 3333334445555556666666555
Q ss_pred cccc-cchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCccc--ccCCcccCCCCCCCEEECCCCcCcccc
Q 018826 137 LTGA-IRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIH--GIIPDELTKLSQLKNLNISSNLLSGQI 213 (350)
Q Consensus 137 ~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~--~~~~~~~~~~~~L~~L~l~~n~~~~~~ 213 (350)
+... ....+.++++|+.|++++|.+.+..+..+..+++|+.|++++|.+. +..|..+..+++|+.|++++|.+++..
T Consensus 417 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~ 496 (680)
T 1ziw_A 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN 496 (680)
T ss_dssp CEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCC
T ss_pred CccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCC
Confidence 5432 2244555566666666666555555555666666666666666654 345667778888888888888888777
Q ss_pred chhhhCCCCCCEEEccCCcccccCC--------ccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEcccccccccc
Q 018826 214 PSAIGKLFNLKYLDLSKNKLGGSIP--------TEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTI 285 (350)
Q Consensus 214 ~~~~~~~~~L~~L~l~~n~i~~~~~--------~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~ 285 (350)
+..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|+++...+..+..+++|+.|++++|++++..
T Consensus 497 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~ 576 (680)
T 1ziw_A 497 DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP 576 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred hhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCC
Confidence 7778888888888888888875321 23677888999999999988655557888899999999999998766
Q ss_pred CCccccccc----CCCCCcceecCCCC----CCCCCCcccCCCCCCcc
Q 018826 286 TKTLCPMHS----DMSFNRLEGEIPSN----LRDNPPKSFAGNTGLCG 325 (350)
Q Consensus 286 p~~~~~~~~----~l~~N~l~~~ip~~----~~~~~~~~~~~n~~~~~ 325 (350)
+..|..... ++++|++++..|.. +..+..+++.+||+.|.
T Consensus 577 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 577 ASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp TTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred HhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence 666655443 89999998665542 36788899999999885
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.4e-35 Score=282.52 Aligned_cols=317 Identities=17% Similarity=0.256 Sum_probs=216.6
Q ss_pred ccccccc-cCCCCcceec-----------------CCcccC--CCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCC
Q 018826 4 QFHQGQD-IQPYTENTCT-----------------IPKEIG--SLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSN 63 (350)
Q Consensus 4 ~~~~~~~-~~~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 63 (350)
.++.++. -+.+|.++|. +|..+. ++++|++|++++|.+.+..|..+.++++|++|++++|
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 3445555 3456778875 999988 9999999999999988888999999999999999999
Q ss_pred c-CCC-CcchhccCC------CCCcEEecccccccCCCCc--cccCCCCCcEEEccCCccccccCccccCCCCCCEEEcc
Q 018826 64 N-LTG-ELPQEIENL------KSLIRLFVRNNTLGGPIPS--TLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIK 133 (350)
Q Consensus 64 ~-i~~-~~~~~~~~l------~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 133 (350)
+ +++ .+|..+..+ ++|++|++++|.+. .+|. .+..+++|++|++++|.+.+.+| .+..+++|++|+++
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~ 361 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLA 361 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECC
T ss_pred CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECC
Confidence 8 887 677777665 88999999999888 6666 78888999999999988886666 77777777777777
Q ss_pred cCccccccchhhhccCC-ccEEecCCCccccCccccccCCC--CCCEEEccCCcccccCCcccC-------CCCCCCEEE
Q 018826 134 VNKLTGAIRSTLGQLTS-LLQLDLSSNQLHSSIPLEIGNLS--ALEELDLSDNKIHGIIPDELT-------KLSQLKNLN 203 (350)
Q Consensus 134 ~n~~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~l~~~~--~L~~L~l~~n~~~~~~~~~~~-------~~~~L~~L~ 203 (350)
+|.+. ..+..+..+++ |+.|++++|.+. .+|..+.... +|+.|++++|.+.+..|..+. .+++|+.|+
T Consensus 362 ~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~ 439 (636)
T 4eco_A 362 YNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439 (636)
T ss_dssp SSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEE
T ss_pred CCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEE
Confidence 77776 33445666666 777777777665 4555444433 556666666655554444444 344455555
Q ss_pred CCCCcCccccchhhhCCC-------------------------------CCCEEEccCCcccccCCcccc--CCCCCCEE
Q 018826 204 ISSNLLSGQIPSAIGKLF-------------------------------NLKYLDLSKNKLGGSIPTEIG--NCSELKNL 250 (350)
Q Consensus 204 l~~n~~~~~~~~~~~~~~-------------------------------~L~~L~l~~n~i~~~~~~~~~--~~~~L~~L 250 (350)
+++|.+++..+..+..++ +|+.|++++|.++ .+|..+. .+++|+.|
T Consensus 440 Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L 518 (636)
T 4eco_A 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGI 518 (636)
T ss_dssp CCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEE
T ss_pred CcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEE
Confidence 555544432222233333 5566666666665 4455444 56677777
Q ss_pred ECCCCcCcccCchhhcccCCCCEEEc------cccccccccCCccccccc----CCCCCcceecCCCCC-CCCCCcccCC
Q 018826 251 TLNHNSLDGTIRPEMGEILLLQNLDL------SHNNLSGTITKTLCPMHS----DMSFNRLEGEIPSNL-RDNPPKSFAG 319 (350)
Q Consensus 251 ~l~~n~i~~~~~~~~~~~~~L~~L~l------~~N~i~~~~p~~~~~~~~----~l~~N~l~~~ip~~~-~~~~~~~~~~ 319 (350)
++++|++++ +|..+..+++|+.|++ ++|++.+.+|..+..+.. ++++|++ +.+|..+ ..+..+.+.+
T Consensus 519 ~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~ 596 (636)
T 4eco_A 519 DLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITPNISVLDIKD 596 (636)
T ss_dssp ECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCTTCCEEECCS
T ss_pred ECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHhCcCCEEECcC
Confidence 777777765 5566666677777777 345666667766665544 7777777 4677665 6677777777
Q ss_pred CCCCcccC
Q 018826 320 NTGLCGHV 327 (350)
Q Consensus 320 n~~~~~~~ 327 (350)
|+..|...
T Consensus 597 N~l~~~~~ 604 (636)
T 4eco_A 597 NPNISIDL 604 (636)
T ss_dssp CTTCEEEC
T ss_pred CCCccccH
Confidence 77666443
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.2e-34 Score=273.57 Aligned_cols=293 Identities=22% Similarity=0.235 Sum_probs=180.1
Q ss_pred CCCCcceecCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccC
Q 018826 12 QPYTENTCTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGG 91 (350)
Q Consensus 12 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~ 91 (350)
+.+|.+++..|..|.++++|++|++++|.+++..++.|.++++|++|++++|.+.+..|..|.++++|++|++++|.+.+
T Consensus 40 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~ 119 (606)
T 3t6q_A 40 FSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS 119 (606)
T ss_dssp CTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSC
T ss_pred ccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCccc
Confidence 44567777667777777777777777777776677777777777777777777776667777777777777777777776
Q ss_pred CCCccccCCCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCcc--EEecCCCccc-------
Q 018826 92 PIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLL--QLDLSSNQLH------- 162 (350)
Q Consensus 92 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~--~L~l~~n~~~------- 162 (350)
..+..+..+++|++|++++|.+.+.....+..+++|++|++++|.+....+..+..+++|+ .|++++|.+.
T Consensus 120 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~ 199 (606)
T 3t6q_A 120 IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF 199 (606)
T ss_dssp GGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTT
T ss_pred CCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHh
Confidence 5556667777777777777777654434444567777777777766655444555555554 4444444332
Q ss_pred --------------------------------------------------------------------cCccccccCCCC
Q 018826 163 --------------------------------------------------------------------SSIPLEIGNLSA 174 (350)
Q Consensus 163 --------------------------------------------------------------------~~~~~~l~~~~~ 174 (350)
+..+..+..+++
T Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 279 (606)
T 3t6q_A 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSG 279 (606)
T ss_dssp TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTT
T ss_pred hhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccC
Confidence 222333555666
Q ss_pred CCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCC-ccccCCCCCCEEECC
Q 018826 175 LEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIP-TEIGNCSELKNLTLN 253 (350)
Q Consensus 175 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~~L~~L~l~ 253 (350)
|+.|++++|.++ ..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ ..+..+++|++|+++
T Consensus 280 L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 358 (606)
T 3t6q_A 280 LQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLS 358 (606)
T ss_dssp CSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECC
T ss_pred CCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECC
Confidence 677777776666 345556666677777777776665555556666666666666665553332 235555555555555
Q ss_pred CCcCcccC--chhhcccCCCCEEEccccccccccCCccccccc----CCCCCcceecC
Q 018826 254 HNSLDGTI--RPEMGEILLLQNLDLSHNNLSGTITKTLCPMHS----DMSFNRLEGEI 305 (350)
Q Consensus 254 ~n~i~~~~--~~~~~~~~~L~~L~l~~N~i~~~~p~~~~~~~~----~l~~N~l~~~i 305 (350)
+|++++.. +..+..+++|+.|++++|++++..|..+..... ++++|++++..
T Consensus 359 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 416 (606)
T 3t6q_A 359 HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD 416 (606)
T ss_dssp SSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCT
T ss_pred CCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcc
Confidence 55555433 334455555555555555555555544433322 44555544433
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.1e-35 Score=285.97 Aligned_cols=295 Identities=21% Similarity=0.268 Sum_probs=210.5
Q ss_pred ccccccc-cCCCCcceecCCcccCCCCCcCEEEccCCc-CCC-CCCcccCCC------CCCCEEEccCCcCCCCcch--h
Q 018826 4 QFHQGQD-IQPYTENTCTIPKEIGSLRNLEVLDLVSNN-LNG-TIPKEIGTL------RNLMGLHLSSNNLTGELPQ--E 72 (350)
Q Consensus 4 ~~~~~~~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~i~~~~~~--~ 72 (350)
.++.+++ -+.+|.+++.+|..+.++++|++|++++|. +++ ..|..+..+ ++|++|++++|.++ .+|. .
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~ 325 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS 325 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh
Confidence 4555555 344677888888888888889999988887 776 556555544 77777777777777 5665 6
Q ss_pred ccCCCCCcEEecccccccCCCCccccCCCCCcEEEccCCccccccCccccCCCC-CCEEEcccCcc--------------
Q 018826 73 IENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKN-LTYLFIKVNKL-------------- 137 (350)
Q Consensus 73 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~~-------------- 137 (350)
+.++++|++|++++|.+.+.+| .+..+++|++|++++|.+. .+|..+..+++ |++|++++|.+
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~ 403 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV 403 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSC
T ss_pred hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCc
Confidence 7777777777777777765555 5555555555555555555 34444545555 55555555544
Q ss_pred -----------ccccchhhh-------ccCCccEEecCCCccccCccccccCCCCCCEEEccCCcccccCCcccCCCC--
Q 018826 138 -----------TGAIRSTLG-------QLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLS-- 197 (350)
Q Consensus 138 -----------~~~~~~~~~-------~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~-- 197 (350)
....+..+. .+++|+.|++++|.+....+..+..+++|+.|++++|.++......+....
T Consensus 404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~ 483 (636)
T 4eco_A 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483 (636)
T ss_dssp EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEE
T ss_pred cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccccc
Confidence 433333333 445666677776666633333445577888888888887744333333332
Q ss_pred -----CCCEEECCCCcCccccchhhh--CCCCCCEEEccCCcccccCCccccCCCCCCEEEC------CCCcCcccCchh
Q 018826 198 -----QLKNLNISSNLLSGQIPSAIG--KLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTL------NHNSLDGTIRPE 264 (350)
Q Consensus 198 -----~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l------~~n~i~~~~~~~ 264 (350)
+|+.|++++|.++ .+|..+. .+++|+.|++++|++++ +|..+..+++|+.|++ ++|++.+.+|..
T Consensus 484 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~ 561 (636)
T 4eco_A 484 FKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG 561 (636)
T ss_dssp CTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT
T ss_pred ccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHH
Confidence 8999999999998 6677776 89999999999999996 8888899999999999 567888899999
Q ss_pred hcccCCCCEEEccccccccccCCccccccc--CCCCCcceec
Q 018826 265 MGEILLLQNLDLSHNNLSGTITKTLCPMHS--DMSFNRLEGE 304 (350)
Q Consensus 265 ~~~~~~L~~L~l~~N~i~~~~p~~~~~~~~--~l~~N~l~~~ 304 (350)
+..+++|+.|++++|++ +.+|..+..... ++++|++...
T Consensus 562 l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 562 ITLCPSLTQLQIGSNDI-RKVNEKITPNISVLDIKDNPNISI 602 (636)
T ss_dssp GGGCSSCCEEECCSSCC-CBCCSCCCTTCCEEECCSCTTCEE
T ss_pred HhcCCCCCEEECCCCcC-CccCHhHhCcCCEEECcCCCCccc
Confidence 99999999999999999 578877664333 9999988743
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-35 Score=292.40 Aligned_cols=207 Identities=24% Similarity=0.234 Sum_probs=130.6
Q ss_pred cccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCC
Q 018826 120 EIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQL 199 (350)
Q Consensus 120 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L 199 (350)
.+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|
T Consensus 285 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L 364 (844)
T 3j0a_A 285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL 364 (844)
T ss_dssp CSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCC
T ss_pred hhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCC
Confidence 34444555555555555555444555555666666666665554445555566666666666666655555555556666
Q ss_pred CEEECCCCcCcccc----------------------------------------chhhhCCCCCCEEEccCCccccc---
Q 018826 200 KNLNISSNLLSGQI----------------------------------------PSAIGKLFNLKYLDLSKNKLGGS--- 236 (350)
Q Consensus 200 ~~L~l~~n~~~~~~----------------------------------------~~~~~~~~~L~~L~l~~n~i~~~--- 236 (350)
+.|++++|.+++.. +..+..+++|+.|++++|.+++.
T Consensus 365 ~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 444 (844)
T 3j0a_A 365 QTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGD 444 (844)
T ss_dssp CEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSS
T ss_pred CEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccc
Confidence 66666655544210 00122445555555555555421
Q ss_pred ---------------------------CCccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEccccccccccCCcc
Q 018826 237 ---------------------------IPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTITKTL 289 (350)
Q Consensus 237 ---------------------------~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p~~~ 289 (350)
.+..+..+++|+.|++++|++++.++..+..+++|+.|++++|++++..+..+
T Consensus 445 ~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 524 (844)
T 3j0a_A 445 QTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL 524 (844)
T ss_dssp SSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCC
T ss_pred cccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhh
Confidence 11234455667777777777776666677888889999999999887777666
Q ss_pred ccccc--CCCCCcceecCCCCCCCCCCcccCCCCCCccc
Q 018826 290 CPMHS--DMSFNRLEGEIPSNLRDNPPKSFAGNTGLCGH 326 (350)
Q Consensus 290 ~~~~~--~l~~N~l~~~ip~~~~~~~~~~~~~n~~~~~~ 326 (350)
..... ++++|+|+|..|+.+..+..+++.+||+.|..
T Consensus 525 ~~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~~C~c 563 (844)
T 3j0a_A 525 PANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICEC 563 (844)
T ss_dssp CSCCCEEEEEEECCCCCCSCCCSSCCEEEEEEECCCCSS
T ss_pred hccccEEECCCCcCCCCChhHhCCcCEEEecCCCccccc
Confidence 53322 88999999999998899999999999999953
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.6e-35 Score=274.38 Aligned_cols=152 Identities=22% Similarity=0.317 Sum_probs=119.1
Q ss_pred cCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCcc--ccchhhhCCCCCCEEEccCCcccccCCc-cccCCCC
Q 018826 170 GNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSG--QIPSAIGKLFNLKYLDLSKNKLGGSIPT-EIGNCSE 246 (350)
Q Consensus 170 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~~ 246 (350)
..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++ ..|..+..+++|++|++++|.+++.+|. .+..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 466778888888888887777788888888888888888875 4456788888899999998888863454 4777888
Q ss_pred CCEEECCCCcCcccCchhhcccCCCCEEEccccccccccCCccccccc----CCCCCcceecCCCC-C---CCCCCcccC
Q 018826 247 LKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTITKTLCPMHS----DMSFNRLEGEIPSN-L---RDNPPKSFA 318 (350)
Q Consensus 247 L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p~~~~~~~~----~l~~N~l~~~ip~~-~---~~~~~~~~~ 318 (350)
|++|++++|++++..+..+. ++|+.|++++|+|+ .+|..+..... ++++|+++ .+|.. + ..+..+.+.
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLH 476 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECc
Confidence 99999999988866665543 68999999999988 67766655544 89999998 67775 4 567788899
Q ss_pred CCCCCcc
Q 018826 319 GNTGLCG 325 (350)
Q Consensus 319 ~n~~~~~ 325 (350)
+||..|.
T Consensus 477 ~N~~~c~ 483 (520)
T 2z7x_B 477 TNPWDCS 483 (520)
T ss_dssp SSCBCCC
T ss_pred CCCCccc
Confidence 9988773
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.8e-34 Score=275.40 Aligned_cols=153 Identities=24% Similarity=0.160 Sum_probs=113.1
Q ss_pred ccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccc-hhhhCCCCCCEEEccCCcccccCCccccCCCCC
Q 018826 169 IGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIP-SAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSEL 247 (350)
Q Consensus 169 l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L 247 (350)
+..+++|+.|++++|.+.+ .+..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+++..|..+..+++|
T Consensus 372 ~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 450 (606)
T 3vq2_A 372 DLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450 (606)
T ss_dssp HHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred hccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCC
Confidence 3344445555555554443 23456667777777777777776655 567778888888888888887777778888888
Q ss_pred CEEECCCCcCcc-cCchhhcccCCCCEEEccccccccccCCccccccc----CCCCCcceecCCCCC---CCCCCcccCC
Q 018826 248 KNLTLNHNSLDG-TIRPEMGEILLLQNLDLSHNNLSGTITKTLCPMHS----DMSFNRLEGEIPSNL---RDNPPKSFAG 319 (350)
Q Consensus 248 ~~L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~N~i~~~~p~~~~~~~~----~l~~N~l~~~ip~~~---~~~~~~~~~~ 319 (350)
++|++++|++++ .++..+..+++|+.|++++|++++.+|..+..+.. ++++|++++..|..+ ..+..+++.+
T Consensus 451 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~ 530 (606)
T 3vq2_A 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530 (606)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTT
T ss_pred CEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCC
Confidence 888888888886 36677788888999999999888888877766654 888999988778777 5677888888
Q ss_pred CCC
Q 018826 320 NTG 322 (350)
Q Consensus 320 n~~ 322 (350)
|+.
T Consensus 531 N~l 533 (606)
T 3vq2_A 531 NRI 533 (606)
T ss_dssp SCC
T ss_pred CcC
Confidence 853
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.1e-34 Score=273.14 Aligned_cols=154 Identities=24% Similarity=0.236 Sum_probs=112.5
Q ss_pred CCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccc-hhhhCCCCCCEEEccCCcccccCCccccCCCCCCE
Q 018826 171 NLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIP-SAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKN 249 (350)
Q Consensus 171 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~ 249 (350)
.+++|+.|++++|.+.+..+. +..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 371 ~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 449 (570)
T 2z63_A 371 GTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449 (570)
T ss_dssp TCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred ccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcE
Confidence 344444444444444433222 5666777777777777665444 45677788888888888888777777888888888
Q ss_pred EECCCCcCc-ccCchhhcccCCCCEEEccccccccccCCccccccc----CCCCCcceecCCCCC---CCCCCcccCCCC
Q 018826 250 LTLNHNSLD-GTIRPEMGEILLLQNLDLSHNNLSGTITKTLCPMHS----DMSFNRLEGEIPSNL---RDNPPKSFAGNT 321 (350)
Q Consensus 250 L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~N~i~~~~p~~~~~~~~----~l~~N~l~~~ip~~~---~~~~~~~~~~n~ 321 (350)
|++++|+++ +.+|..+..+++|+.|++++|++++..|..+..+.. ++++|++++..|..+ ..+..+.+.+||
T Consensus 450 L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 888888887 456777888888999999999998888887776554 888999987766655 567788899998
Q ss_pred CCcc
Q 018826 322 GLCG 325 (350)
Q Consensus 322 ~~~~ 325 (350)
..|.
T Consensus 530 ~~~~ 533 (570)
T 2z63_A 530 WDCS 533 (570)
T ss_dssp BCCC
T ss_pred ccCC
Confidence 8774
No 17
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.4e-33 Score=268.01 Aligned_cols=152 Identities=20% Similarity=0.251 Sum_probs=122.0
Q ss_pred cCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccc--cchhhhCCCCCCEEEccCCcccccCC-ccccCCCC
Q 018826 170 GNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQ--IPSAIGKLFNLKYLDLSKNKLGGSIP-TEIGNCSE 246 (350)
Q Consensus 170 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~~ 246 (350)
..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++. .|..+..+++|+.|++++|.+++.+| ..+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 5667888999999988877788888899999999999988863 34567888999999999999986344 45778899
Q ss_pred CCEEECCCCcCcccCchhhcccCCCCEEEccccccccccCCccccccc----CCCCCcceecCCCC-C---CCCCCcccC
Q 018826 247 LKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTITKTLCPMHS----DMSFNRLEGEIPSN-L---RDNPPKSFA 318 (350)
Q Consensus 247 L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p~~~~~~~~----~l~~N~l~~~ip~~-~---~~~~~~~~~ 318 (350)
|++|++++|++++..+..+. ++|+.|++++|+|+ .+|..+..... ++++|+++ .+|.. + ..+..+++.
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLH 505 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECC
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEec
Confidence 99999999999876655443 68999999999998 56666555444 99999999 67776 4 677888999
Q ss_pred CCCCCcc
Q 018826 319 GNTGLCG 325 (350)
Q Consensus 319 ~n~~~~~ 325 (350)
+||+.|.
T Consensus 506 ~N~~~c~ 512 (562)
T 3a79_B 506 DNPWDCT 512 (562)
T ss_dssp SCCBCCC
T ss_pred CCCcCCC
Confidence 9999884
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.5e-33 Score=271.54 Aligned_cols=315 Identities=22% Similarity=0.207 Sum_probs=241.3
Q ss_pred cCCCCcceecCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEeccccccc
Q 018826 11 IQPYTENTCTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLG 90 (350)
Q Consensus 11 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~ 90 (350)
-+.+|++++..+..|.++++|++|+|++|.++++.+++|.++++|++|+|++|+++...+..|.++++|++|++++|.+.
T Consensus 58 dLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~ 137 (635)
T 4g8a_A 58 DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 137 (635)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCC
T ss_pred EeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCC
Confidence 35678888888888999999999999999999888888999999999999999998777778999999999999999998
Q ss_pred CCCCccccCCCCCcEEEccCCccccc-cCccccCCCCCCEEEcccCccccccchhhhccC--------------------
Q 018826 91 GPIPSTLFRLTNLEVLYLGFNQFNGT-IPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLT-------------------- 149 (350)
Q Consensus 91 ~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~-------------------- 149 (350)
+..+..|.++++|++|++++|.+... .+..+..+++|++|++++|.+....+..+..+.
T Consensus 138 ~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~ 217 (635)
T 4g8a_A 138 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 217 (635)
T ss_dssp CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEEC
T ss_pred CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccC
Confidence 77777889999999999999998754 466778889999999988876543322221110
Q ss_pred --------------------------------------------------------------------------------
Q 018826 150 -------------------------------------------------------------------------------- 149 (350)
Q Consensus 150 -------------------------------------------------------------------------------- 149 (350)
T Consensus 218 ~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 297 (635)
T 4g8a_A 218 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDG 297 (635)
T ss_dssp TTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEE
T ss_pred cccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccc
Confidence
Q ss_pred -------------------------------CccEEecCCCccccCcc-------------------ccccCCCCCCEEE
Q 018826 150 -------------------------------SLLQLDLSSNQLHSSIP-------------------LEIGNLSALEELD 179 (350)
Q Consensus 150 -------------------------------~L~~L~l~~n~~~~~~~-------------------~~l~~~~~L~~L~ 179 (350)
.++.|++.++.+..... .....+++++.++
T Consensus 298 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ 377 (635)
T 4g8a_A 298 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLD 377 (635)
T ss_dssp CTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEE
T ss_pred hhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccch
Confidence 11122222221110000 0011234555555
Q ss_pred ccCCccc-------------------------------------------------cc-CCcccCCCCCCCEEECCCCcC
Q 018826 180 LSDNKIH-------------------------------------------------GI-IPDELTKLSQLKNLNISSNLL 209 (350)
Q Consensus 180 l~~n~~~-------------------------------------------------~~-~~~~~~~~~~L~~L~l~~n~~ 209 (350)
++.|.+. .. ....+..+++++.++++.|.+
T Consensus 378 ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l 457 (635)
T 4g8a_A 378 LSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 457 (635)
T ss_dssp CCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCC
T ss_pred hhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccc
Confidence 5554331 10 112345566777888888888
Q ss_pred ccccchhhhCCCCCCEEEccCCccc-ccCCccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEccccccccccCCc
Q 018826 210 SGQIPSAIGKLFNLKYLDLSKNKLG-GSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTITKT 288 (350)
Q Consensus 210 ~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p~~ 288 (350)
.+..+..+..+++|+.|++++|.+. ...|..+..+++|++|++++|++++..|..|..+++|++|++++|+|++..|..
T Consensus 458 ~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~ 537 (635)
T 4g8a_A 458 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 537 (635)
T ss_dssp EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGG
T ss_pred ccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhH
Confidence 7777788888999999999999854 457788999999999999999999988999999999999999999999988888
Q ss_pred cccccc----CCCCCcceecCCCCC----CCCCCcccCCCCCCcc
Q 018826 289 LCPMHS----DMSFNRLEGEIPSNL----RDNPPKSFAGNTGLCG 325 (350)
Q Consensus 289 ~~~~~~----~l~~N~l~~~ip~~~----~~~~~~~~~~n~~~~~ 325 (350)
+..+.. ++++|+|++..|+.+ .++..+++.+||+.|.
T Consensus 538 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 538 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp GTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred HhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 876654 999999998888877 3577889999999994
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=5.2e-34 Score=272.64 Aligned_cols=304 Identities=20% Similarity=0.187 Sum_probs=196.3
Q ss_pred CCcceecCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCC
Q 018826 14 YTENTCTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPI 93 (350)
Q Consensus 14 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 93 (350)
+|.+....+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..|..|.++++|++|++++|.+....
T Consensus 60 ~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~ 139 (597)
T 3oja_B 60 NSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 139 (597)
T ss_dssp SCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCC
Confidence 34444444445678899999999999988877778889999999999999998887888889999999999999988766
Q ss_pred CccccCCCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccC---------
Q 018826 94 PSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSS--------- 164 (350)
Q Consensus 94 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--------- 164 (350)
+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.... +..+++|+.|++++|.+.+.
T Consensus 140 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L 216 (597)
T 3oja_B 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEEL 216 (597)
T ss_dssp TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTTCSEE
T ss_pred HHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccccCCchhhee
Confidence 666788999999999999998887878888999999999999887653 44566666666666655421
Q ss_pred ---------ccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccc
Q 018826 165 ---------IPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGG 235 (350)
Q Consensus 165 ---------~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 235 (350)
.+.. ..++|+.|++++|.+++. ..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++
T Consensus 217 ~ls~n~l~~~~~~--~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 292 (597)
T 3oja_B 217 DASHNSINVVRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 292 (597)
T ss_dssp ECCSSCCCEEECS--CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE
T ss_pred eccCCcccccccc--cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC
Confidence 1111 123455555555555432 345555566666666666555555555556666666666666553
Q ss_pred cCCccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEccccccccccCCccccccc-CCCCCcceecCC-CCCCCCC
Q 018826 236 SIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTITKTLCPMHS-DMSFNRLEGEIP-SNLRDNP 313 (350)
Q Consensus 236 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p~~~~~~~~-~l~~N~l~~~ip-~~~~~~~ 313 (350)
+|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++..+..+..... ++++|.+++..+ ..+..+.
T Consensus 293 -l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~ 370 (597)
T 3oja_B 293 -LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVA 370 (597)
T ss_dssp -EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHHHHHHHTTTCC
T ss_pred -CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCCCChhHHHHHHHHh
Confidence 3334444556666666666665 34444555566666666666655443333333222 555665554321 1224444
Q ss_pred CcccCCCCCCccc
Q 018826 314 PKSFAGNTGLCGH 326 (350)
Q Consensus 314 ~~~~~~n~~~~~~ 326 (350)
...+.+++..|+.
T Consensus 371 ~~~~~~~~~~C~~ 383 (597)
T 3oja_B 371 RPAVDDADQHCKI 383 (597)
T ss_dssp TTTBCCCCCCCCT
T ss_pred hhccccccccCCc
Confidence 4445555555554
No 20
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2e-33 Score=255.28 Aligned_cols=292 Identities=22% Similarity=0.215 Sum_probs=197.3
Q ss_pred eecCCc-ccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCcc
Q 018826 18 TCTIPK-EIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPST 96 (350)
Q Consensus 18 ~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 96 (350)
...+|. .|..+++|++|+++++.+++..+..+..+++|++|++++|.+.+..|..|.++++|++|++++|.+....+..
T Consensus 57 l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~ 136 (390)
T 3o6n_A 57 MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI 136 (390)
T ss_dssp ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHH
Confidence 344454 4678889999999998888777778888999999999999888777778888899999999998888666566
Q ss_pred ccCCCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCC
Q 018826 97 LFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALE 176 (350)
Q Consensus 97 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 176 (350)
|..+++|++|++++|.+.+..+..+..+++|++|++++|.+... .+..+++|+.|++++|.+.. +...++++
T Consensus 137 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~ 208 (390)
T 3o6n_A 137 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVE 208 (390)
T ss_dssp TTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCS
T ss_pred hcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcce
Confidence 78888999999999988877777788889999999998888765 24556777777777776542 12334566
Q ss_pred EEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCc
Q 018826 177 ELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNS 256 (350)
Q Consensus 177 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~ 256 (350)
.|++++|.+..... ...++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++|+.|++++|+
T Consensus 209 ~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (390)
T 3o6n_A 209 ELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283 (390)
T ss_dssp EEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC
T ss_pred EEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc
Confidence 66666666654321 1234566666666666532 345666666666666666665555666666666666666666
Q ss_pred CcccCchhhcccCCCCEEEccccccccccCCccccccc----CCCCCcceecCCCCCCCCCCcccCCCCCCc
Q 018826 257 LDGTIRPEMGEILLLQNLDLSHNNLSGTITKTLCPMHS----DMSFNRLEGEIPSNLRDNPPKSFAGNTGLC 324 (350)
Q Consensus 257 i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p~~~~~~~~----~l~~N~l~~~ip~~~~~~~~~~~~~n~~~~ 324 (350)
+++ ++..+..+++|+.|++++|++++ +|..+..+.. ++++|.+++.-...+..+..+++.+|++.|
T Consensus 284 l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 284 LVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEH
T ss_pred Ccc-cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCccc
Confidence 663 33344555666666666666653 3333332222 666666664333333566666666666555
No 21
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=7.7e-34 Score=250.05 Aligned_cols=254 Identities=30% Similarity=0.524 Sum_probs=196.3
Q ss_pred CCCCEEEccCCcCCC--CcchhccCCCCCcEEeccc-ccccCCCCccccCCCCCcEEEccCCccccccCccccCCCCCCE
Q 018826 53 RNLMGLHLSSNNLTG--ELPQEIENLKSLIRLFVRN-NTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTY 129 (350)
Q Consensus 53 ~~L~~L~l~~~~i~~--~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 129 (350)
.+++.|+++++.+.+ .+|..+.++++|++|++++ |.+.+..|..|..+++|++|++++|.+.+..|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467777777777776 6677777777777777774 6776667777777777777777777777667777777777777
Q ss_pred EEcccCccccccchhhhccCCccEEecCCCccccCccccccCCC-CCCEEEccCCcccccCCcccCCCCCCCEEECCCCc
Q 018826 130 LFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLS-ALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNL 208 (350)
Q Consensus 130 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 208 (350)
|++++|.+....+..+..+++|+.|++++|.+.+..|..+..++ .|+.|++++|.+++..+..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 77777777766666777777788888887777766777777776 788888888888877777777776 8888888888
Q ss_pred CccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEccccccccccCCc
Q 018826 209 LSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTITKT 288 (350)
Q Consensus 209 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p~~ 288 (350)
+++..+..+..+++|+.|++++|.+++..+. +..+++|++|++++|++++.+|..+..+++|+.|++++|++++.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 8877888888888888888888888855544 677888888888888888888888888888888888888888766632
Q ss_pred ccccccCCCCCcceecCCCCCCCCCCcccCCCCCCccc
Q 018826 289 LCPMHSDMSFNRLEGEIPSNLRDNPPKSFAGNTGLCGH 326 (350)
Q Consensus 289 ~~~~~~~l~~N~l~~~ip~~~~~~~~~~~~~n~~~~~~ 326 (350)
..+..+..+++.+||.+||.
T Consensus 288 ------------------~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 288 ------------------GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp ------------------TTGGGSCGGGTCSSSEEEST
T ss_pred ------------------ccccccChHHhcCCCCccCC
Confidence 12256777889999999975
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.2e-33 Score=277.28 Aligned_cols=311 Identities=19% Similarity=0.222 Sum_probs=202.2
Q ss_pred ccccccc-cCCCCccee-----------------cCCcccC--CCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCC
Q 018826 4 QFHQGQD-IQPYTENTC-----------------TIPKEIG--SLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSN 63 (350)
Q Consensus 4 ~~~~~~~-~~~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 63 (350)
.++.++. -+.+|.++| .+|..+. ++++|++|++++|.+.+..|..+.++++|+.|++++|
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence 3444554 344677777 4888877 9999999999999988888888999999999999999
Q ss_pred c-CCC-CcchhccCC-------CCCcEEecccccccCCCCc--cccCCCCCcEEEccCCccccccCccccCCCCCCEEEc
Q 018826 64 N-LTG-ELPQEIENL-------KSLIRLFVRNNTLGGPIPS--TLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFI 132 (350)
Q Consensus 64 ~-i~~-~~~~~~~~l-------~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 132 (350)
+ +++ .+|..+..+ ++|++|++++|.+. .+|. .+..+++|+.|++++|.+. .+| .+..+++|+.|++
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~L 602 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKL 602 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEEC
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEEC
Confidence 7 776 667655544 48999999999888 6666 7888999999999999888 556 7888889999999
Q ss_pred ccCccccccchhhhccCC-ccEEecCCCccccCccccccCCCC--CCEEEccCCcccccCCcc---cC--CCCCCCEEEC
Q 018826 133 KVNKLTGAIRSTLGQLTS-LLQLDLSSNQLHSSIPLEIGNLSA--LEELDLSDNKIHGIIPDE---LT--KLSQLKNLNI 204 (350)
Q Consensus 133 ~~n~~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~l~~~~~--L~~L~l~~n~~~~~~~~~---~~--~~~~L~~L~l 204 (350)
++|.+. ..+..+..+++ |+.|++++|.+. .+|..+...+. |+.|++++|.+.+..+.. +. ..++|+.|++
T Consensus 603 s~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~L 680 (876)
T 4ecn_A 603 DYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680 (876)
T ss_dssp CSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEEC
T ss_pred cCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEc
Confidence 988888 45556778888 888888888876 55655554433 667777766665433311 11 1224445555
Q ss_pred CCCcCccccchhhhCCC-------------------------------CCCEEEccCCcccccCCcccc--CCCCCCEEE
Q 018826 205 SSNLLSGQIPSAIGKLF-------------------------------NLKYLDLSKNKLGGSIPTEIG--NCSELKNLT 251 (350)
Q Consensus 205 ~~n~~~~~~~~~~~~~~-------------------------------~L~~L~l~~n~i~~~~~~~~~--~~~~L~~L~ 251 (350)
++|.++...+..+..++ +|+.|++++|.++ .+|..+. .+++|+.|+
T Consensus 681 s~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~ 759 (876)
T 4ecn_A 681 SYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMD 759 (876)
T ss_dssp CSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEE
T ss_pred cCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEE
Confidence 55544422222223444 4555555555554 3444443 455555555
Q ss_pred CCCCcCcccCchhhcccCCCCEEEccc------cccccccCCccccccc----CCCCCcceecCCCCC-CCCCCcccCCC
Q 018826 252 LNHNSLDGTIRPEMGEILLLQNLDLSH------NNLSGTITKTLCPMHS----DMSFNRLEGEIPSNL-RDNPPKSFAGN 320 (350)
Q Consensus 252 l~~n~i~~~~~~~~~~~~~L~~L~l~~------N~i~~~~p~~~~~~~~----~l~~N~l~~~ip~~~-~~~~~~~~~~n 320 (350)
+++|++++ +|..+..+++|+.|++++ |++.+.+|..+..+.. ++++|++ +.+|..+ ..+..+.+.+|
T Consensus 760 Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N 837 (876)
T 4ecn_A 760 VSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADN 837 (876)
T ss_dssp CCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSC
T ss_pred eCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCC
Confidence 55555554 344455555555555543 4455555555544433 5555555 3555544 45555555555
Q ss_pred CC
Q 018826 321 TG 322 (350)
Q Consensus 321 ~~ 322 (350)
+.
T Consensus 838 ~l 839 (876)
T 4ecn_A 838 PN 839 (876)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.7e-33 Score=266.84 Aligned_cols=311 Identities=24% Similarity=0.226 Sum_probs=216.2
Q ss_pred cCCCCcceecCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEeccccccc
Q 018826 11 IQPYTENTCTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLG 90 (350)
Q Consensus 11 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~ 90 (350)
-+.+|.+++..|..|.++++|++|++++|.+++..++.|..+++|++|++++|.+.+..+..|.++++|++|++++|.+.
T Consensus 32 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 111 (549)
T 2z81_A 32 DLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111 (549)
T ss_dssp ECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCS
T ss_pred ECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCccc
Confidence 34567788888888888899999999998888777788888889999999998888777777888888999999888887
Q ss_pred CC-CCccccCCCCCcEEEccCCc-cccccCccccCCCCCCEEEcccCccccccchhhh----------------------
Q 018826 91 GP-IPSTLFRLTNLEVLYLGFNQ-FNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLG---------------------- 146 (350)
Q Consensus 91 ~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~---------------------- 146 (350)
+. .+..+..+++|++|++++|. +....+..+..+++|++|++++|.+....+..+.
T Consensus 112 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 191 (549)
T 2z81_A 112 TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIF 191 (549)
T ss_dssp SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHH
T ss_pred ccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhh
Confidence 53 35567778888888888876 3333334566677777777776666543332222
Q ss_pred --ccCCccEEecCCCccccC------------------------------------------------------------
Q 018826 147 --QLTSLLQLDLSSNQLHSS------------------------------------------------------------ 164 (350)
Q Consensus 147 --~~~~L~~L~l~~n~~~~~------------------------------------------------------------ 164 (350)
.+++|+.|++++|.+.+.
T Consensus 192 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 271 (549)
T 2z81_A 192 ADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP 271 (549)
T ss_dssp HHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCC
T ss_pred HhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccc
Confidence 234455555555444321
Q ss_pred -----------------------------------------------------ccccc-cCCCCCCEEEccCCcccccCC
Q 018826 165 -----------------------------------------------------IPLEI-GNLSALEELDLSDNKIHGIIP 190 (350)
Q Consensus 165 -----------------------------------------------------~~~~l-~~~~~L~~L~l~~n~~~~~~~ 190 (350)
+|..+ ..+++|+.|++++|.+.+..+
T Consensus 272 ~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~ 351 (549)
T 2z81_A 272 SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYL 351 (549)
T ss_dssp CTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHH
T ss_pred cchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccc
Confidence 11111 245677777777777765432
Q ss_pred ---cccCCCCCCCEEECCCCcCccccc--hhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccCchhh
Q 018826 191 ---DELTKLSQLKNLNISSNLLSGQIP--SAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEM 265 (350)
Q Consensus 191 ---~~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~ 265 (350)
..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++. +..+
T Consensus 352 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~ 429 (549)
T 2z81_A 352 KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV-KTCI 429 (549)
T ss_dssp HHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCC-CTTS
T ss_pred cchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccc-cchh
Confidence 235667788888888888775432 45777888888888888887 6677777777777777777777632 2211
Q ss_pred ------------------cccCCCCEEEccccccccccCCccccccc----CCCCCcceecCCCCC---CCCCCcccCCC
Q 018826 266 ------------------GEILLLQNLDLSHNNLSGTITKTLCPMHS----DMSFNRLEGEIPSNL---RDNPPKSFAGN 320 (350)
Q Consensus 266 ------------------~~~~~L~~L~l~~N~i~~~~p~~~~~~~~----~l~~N~l~~~ip~~~---~~~~~~~~~~n 320 (350)
..+++|++|++++|+++ .+|.. ..... ++++|++++..|..+ ..+..+++.+|
T Consensus 430 ~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 507 (549)
T 2z81_A 430 PQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507 (549)
T ss_dssp CTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCCG-GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSS
T ss_pred cCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCCc-ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCC
Confidence 25678888888888887 45542 22222 889999997777655 67788889999
Q ss_pred CCCcc
Q 018826 321 TGLCG 325 (350)
Q Consensus 321 ~~~~~ 325 (350)
|+.|.
T Consensus 508 ~~~~~ 512 (549)
T 2z81_A 508 PWDCS 512 (549)
T ss_dssp CBCCC
T ss_pred CccCC
Confidence 88774
No 24
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.8e-33 Score=274.50 Aligned_cols=238 Identities=22% Similarity=0.356 Sum_probs=199.5
Q ss_pred CCcceecCCcccCCCCCcCEEEccCCcCCC-----------------CCCcccC--CCCCCCEEEccCCcCCCCcchhcc
Q 018826 14 YTENTCTIPKEIGSLRNLEVLDLVSNNLNG-----------------TIPKEIG--TLRNLMGLHLSSNNLTGELPQEIE 74 (350)
Q Consensus 14 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~i~~~~~~~~~ 74 (350)
+|++++ +|..|.++++|+.|++++|.+++ .+|..+. ++++|++|++++|.+.+.+|..|.
T Consensus 434 ~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 434 TNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred cCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence 478888 99999999999999999999997 2788877 999999999999999989999999
Q ss_pred CCCCCcEEeccccc-ccC-CCCcccc-------CCCCCcEEEccCCccccccCc--cccCCCCCCEEEcccCccccccch
Q 018826 75 NLKSLIRLFVRNNT-LGG-PIPSTLF-------RLTNLEVLYLGFNQFNGTIPR--EIGHLKNLTYLFIKVNKLTGAIRS 143 (350)
Q Consensus 75 ~l~~L~~L~l~~n~-~~~-~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~ 143 (350)
++++|++|++++|. +.+ .+|..+. .+++|++|++++|.+. .+|. .+..+++|++|++++|.+.. .+
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~-lp- 589 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRH-LE- 589 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCB-CC-
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCccc-ch-
Confidence 99999999999998 776 5665444 4559999999999999 6777 89999999999999999984 44
Q ss_pred hhhccCCccEEecCCCccccCccccccCCCC-CCEEEccCCcccccCCcccCCCCC--CCEEECCCCcCccccchh---h
Q 018826 144 TLGQLTSLLQLDLSSNQLHSSIPLEIGNLSA-LEELDLSDNKIHGIIPDELTKLSQ--LKNLNISSNLLSGQIPSA---I 217 (350)
Q Consensus 144 ~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~--L~~L~l~~n~~~~~~~~~---~ 217 (350)
.+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.++ ..|..+...+. |+.|++++|.+.+..|.. +
T Consensus 590 ~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l 667 (876)
T 4ecn_A 590 AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667 (876)
T ss_dssp CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhh
Confidence 8889999999999999998 78888888998 999999999998 56667766654 999999999998765532 2
Q ss_pred h--CCCCCCEEEccCCcccccCCcc-ccCCCCCCEEECCCCcCc
Q 018826 218 G--KLFNLKYLDLSKNKLGGSIPTE-IGNCSELKNLTLNHNSLD 258 (350)
Q Consensus 218 ~--~~~~L~~L~l~~n~i~~~~~~~-~~~~~~L~~L~l~~n~i~ 258 (350)
. ..++|+.|++++|.++ .+|.. +..+++|+.|++++|+++
T Consensus 668 ~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 668 DDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT 710 (876)
T ss_dssp TTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS
T ss_pred ccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC
Confidence 2 3458999999999998 44443 335666666666666665
No 25
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=8.7e-34 Score=249.72 Aligned_cols=253 Identities=28% Similarity=0.452 Sum_probs=233.9
Q ss_pred CCcCEEEccCCcCCC--CCCcccCCCCCCCEEEccC-CcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcE
Q 018826 29 RNLEVLDLVSNNLNG--TIPKEIGTLRNLMGLHLSS-NNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEV 105 (350)
Q Consensus 29 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 105 (350)
.+++.|+++++.+++ ..|..+..+++|++|++++ |.+.+..|..|.++++|++|++++|.+.+..|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999999998 7889999999999999995 8898889999999999999999999999888999999999999
Q ss_pred EEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccC-CccEEecCCCccccCccccccCCCCCCEEEccCCc
Q 018826 106 LYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLT-SLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNK 184 (350)
Q Consensus 106 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 184 (350)
|++++|.+.+..|..+..+++|++|++++|.+....+..+..++ +|+.|++++|.+.+..|..+..+. |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 99999999988999999999999999999999877778888888 999999999999888888888887 9999999999
Q ss_pred ccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccCchh
Q 018826 185 IHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPE 264 (350)
Q Consensus 185 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~ 264 (350)
+++..+..+..+++|+.|++++|.+++..+. +..+++|++|++++|.+++..|..+..+++|+.|++++|++++.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 9988889999999999999999999866665 788999999999999999899999999999999999999999888776
Q ss_pred hcccCCCCEEEccccc-cccc
Q 018826 265 MGEILLLQNLDLSHNN-LSGT 284 (350)
Q Consensus 265 ~~~~~~L~~L~l~~N~-i~~~ 284 (350)
..+++|+.+++++|+ +.|.
T Consensus 288 -~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 288 -GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp -TTGGGSCGGGTCSSSEEEST
T ss_pred -ccccccChHHhcCCCCccCC
Confidence 788999999999997 6553
No 26
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=262.28 Aligned_cols=309 Identities=20% Similarity=0.180 Sum_probs=214.5
Q ss_pred cCCCCcceecCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEeccccccc
Q 018826 11 IQPYTENTCTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLG 90 (350)
Q Consensus 11 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~ 90 (350)
-+.+|.+++..+..|.++++|++|++++|.+++..++.|.++++|++|++++|.+....+..|.++++|++|++++|.+.
T Consensus 34 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 113 (570)
T 2z63_A 34 DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113 (570)
T ss_dssp ECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred EccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccc
Confidence 34467777777778888888888888888888777778888888888888888888776778888888888888888887
Q ss_pred CCCCccccCCCCCcEEEccCCccccc-cCccccCCCCCCEEEcccCccccccchhhhcc---------------------
Q 018826 91 GPIPSTLFRLTNLEVLYLGFNQFNGT-IPREIGHLKNLTYLFIKVNKLTGAIRSTLGQL--------------------- 148 (350)
Q Consensus 91 ~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~--------------------- 148 (350)
...+..+..+++|++|++++|.+.+. .|..+..+++|++|++++|.+....+..+..+
T Consensus 114 ~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~ 193 (570)
T 2z63_A 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193 (570)
T ss_dssp CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEEC
T ss_pred cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecC
Confidence 66555677888888888888888753 47778888888888888877654433333332
Q ss_pred --------------------------------------------------------------------------------
Q 018826 149 -------------------------------------------------------------------------------- 148 (350)
Q Consensus 149 -------------------------------------------------------------------------------- 148 (350)
T Consensus 194 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~ 273 (570)
T 2z63_A 194 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDD 273 (570)
T ss_dssp TTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESC
T ss_pred HHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhh
Confidence
Q ss_pred --------CCccEEecCCCccccCcccccc------------------------------------------CCCCCCEE
Q 018826 149 --------TSLLQLDLSSNQLHSSIPLEIG------------------------------------------NLSALEEL 178 (350)
Q Consensus 149 --------~~L~~L~l~~n~~~~~~~~~l~------------------------------------------~~~~L~~L 178 (350)
++|+.|++++|.+. ..|..+. .+++|+.|
T Consensus 274 ~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L 352 (570)
T 2z63_A 274 IIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL 352 (570)
T ss_dssp STTTTGGGTTCSEEEEESCEEC-SCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEE
T ss_pred chhhhcCcCcccEEEecCccch-hhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEE
Confidence 33344444433332 1222222 22333444
Q ss_pred EccCCcccccC--CcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCC-ccccCCCCCCEEECCCC
Q 018826 179 DLSDNKIHGII--PDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIP-TEIGNCSELKNLTLNHN 255 (350)
Q Consensus 179 ~l~~n~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~~L~~L~l~~n 255 (350)
++++|.+++.. +..+..+++|+.|++++|.+.+..+. +..+++|+.|++++|.+++..+ ..+..+++|++|++++|
T Consensus 353 ~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 431 (570)
T 2z63_A 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431 (570)
T ss_dssp ECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTS
T ss_pred eCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCC
Confidence 44444333221 23344455555555555555533332 6666777777777777765444 45777888888888888
Q ss_pred cCcccCchhhcccCCCCEEEccccccc-cccCCccccccc----CCCCCcceecCCCCC---CCCCCcccCCCC
Q 018826 256 SLDGTIRPEMGEILLLQNLDLSHNNLS-GTITKTLCPMHS----DMSFNRLEGEIPSNL---RDNPPKSFAGNT 321 (350)
Q Consensus 256 ~i~~~~~~~~~~~~~L~~L~l~~N~i~-~~~p~~~~~~~~----~l~~N~l~~~ip~~~---~~~~~~~~~~n~ 321 (350)
++++..+..+..+++|+.|++++|.++ +.+|..+..... ++++|++++..|..+ ..+..+.+.+|.
T Consensus 432 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505 (570)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc
Confidence 888777788888899999999999887 577877766554 899999998888877 567788888884
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7.3e-33 Score=251.51 Aligned_cols=281 Identities=20% Similarity=0.201 Sum_probs=241.4
Q ss_pred CCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcEE
Q 018826 27 SLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVL 106 (350)
Q Consensus 27 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 106 (350)
.+++++.++++++.++...+..+..+++|++|++++|.+....+..|..+++|++|++++|.+.+..+..|..+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 46899999999999987777778899999999999999997777789999999999999999998888889999999999
Q ss_pred EccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCccc
Q 018826 107 YLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIH 186 (350)
Q Consensus 107 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 186 (350)
++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+. .+..+++|+.+++++|.++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence 9999999966666678999999999999999988888899999999999999998754 3456789999999999887
Q ss_pred ccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccCchhhc
Q 018826 187 GIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMG 266 (350)
Q Consensus 187 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~ 266 (350)
+. ...++|++|++++|.+... +. ...++|+.|++++|.+++. ..+..+++|++|++++|++++..+..+.
T Consensus 200 ~~-----~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (390)
T 3o6n_A 200 TL-----AIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV 269 (390)
T ss_dssp EE-----ECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred cc-----CCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence 43 3456899999999999854 33 3357999999999999854 5688899999999999999988888999
Q ss_pred ccCCCCEEEccccccccccCCccccccc----CCCCCcceecCCCCC---CCCCCcccCCCCC
Q 018826 267 EILLLQNLDLSHNNLSGTITKTLCPMHS----DMSFNRLEGEIPSNL---RDNPPKSFAGNTG 322 (350)
Q Consensus 267 ~~~~L~~L~l~~N~i~~~~p~~~~~~~~----~l~~N~l~~~ip~~~---~~~~~~~~~~n~~ 322 (350)
.+++|+.|++++|++++. |..+..... ++++|+++ .+|..+ ..+..+.+.+|+.
T Consensus 270 ~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i 330 (390)
T 3o6n_A 270 KMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 330 (390)
T ss_dssp TCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCC
T ss_pred ccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcc
Confidence 999999999999999864 433333322 99999998 666655 7888999999954
No 28
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.8e-33 Score=261.52 Aligned_cols=299 Identities=23% Similarity=0.279 Sum_probs=187.9
Q ss_pred CCcceecCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCC
Q 018826 14 YTENTCTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPI 93 (350)
Q Consensus 14 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 93 (350)
+|+++ .+|..+. ++|++|++++|.+++..++.|..+++|++|++++|++++..|..|.++++|++|++++|.+.. +
T Consensus 9 ~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l 84 (520)
T 2z7x_B 9 KNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-I 84 (520)
T ss_dssp TSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-E
T ss_pred CCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-c
Confidence 44444 4555444 566666666666665555556666666666666666665556666666666666666666653 2
Q ss_pred CccccCCCCCcEEEccCCccccc-cCccccCCCCCCEEEcccCccccccchhhhccCCc--cEEecCCCcc--ccCcccc
Q 018826 94 PSTLFRLTNLEVLYLGFNQFNGT-IPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSL--LQLDLSSNQL--HSSIPLE 168 (350)
Q Consensus 94 ~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L--~~L~l~~n~~--~~~~~~~ 168 (350)
|.. .+++|++|++++|.+++. .|..+..+++|++|++++|.+.. ..+..+++| +.|++++|.+ .+..|..
T Consensus 85 p~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~ 159 (520)
T 2z7x_B 85 SCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEG 159 (520)
T ss_dssp ECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTT
T ss_pred Ccc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccccc
Confidence 322 566666666666666542 34566666666666666665543 123333333 4444444433 1111111
Q ss_pred ccC-----------------------------------------------------------------------------
Q 018826 169 IGN----------------------------------------------------------------------------- 171 (350)
Q Consensus 169 l~~----------------------------------------------------------------------------- 171 (350)
+..
T Consensus 160 l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~ 239 (520)
T 2z7x_B 160 LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR 239 (520)
T ss_dssp TTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHH
T ss_pred ccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHH
Confidence 111
Q ss_pred ------CCCCCEEEccCCcccccCCccc----------------------------------------------------
Q 018826 172 ------LSALEELDLSDNKIHGIIPDEL---------------------------------------------------- 193 (350)
Q Consensus 172 ------~~~L~~L~l~~n~~~~~~~~~~---------------------------------------------------- 193 (350)
.++|+.|++++|.+.+..|..+
T Consensus 240 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 319 (520)
T 2z7x_B 240 ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC 319 (520)
T ss_dssp HHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCC
T ss_pred HHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccc
Confidence 0134444444444332222222
Q ss_pred -CCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccc--cCCccccCCCCCCEEECCCCcCcccCch-hhcccC
Q 018826 194 -TKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGG--SIPTEIGNCSELKNLTLNHNSLDGTIRP-EMGEIL 269 (350)
Q Consensus 194 -~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~--~~~~~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~ 269 (350)
..+++|++|++++|.+++..|..+..+++|+.|++++|.+++ ..|..+..+++|++|++++|++++.+|. .+..++
T Consensus 320 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 320 PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence 567788888888888887777788888888888888888885 3456677888888888888888874444 467778
Q ss_pred CCCEEEccccccccccCCccc-cccc-CCCCCcceecCCCCC---CCCCCcccCCCCC
Q 018826 270 LLQNLDLSHNNLSGTITKTLC-PMHS-DMSFNRLEGEIPSNL---RDNPPKSFAGNTG 322 (350)
Q Consensus 270 ~L~~L~l~~N~i~~~~p~~~~-~~~~-~l~~N~l~~~ip~~~---~~~~~~~~~~n~~ 322 (350)
+|+.|++++|++++..|..+. .... ++++|+++ .+|..+ ..+..+++.+|+.
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l 456 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL 456 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCC
T ss_pred cCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcC
Confidence 889999999988888777764 2222 88999988 788765 6778888888843
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=8.3e-33 Score=274.22 Aligned_cols=307 Identities=22% Similarity=0.221 Sum_probs=195.8
Q ss_pred cCCCCcceecCCcccCCCCCcCEEEccCCcCC-CCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccc
Q 018826 11 IQPYTENTCTIPKEIGSLRNLEVLDLVSNNLN-GTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTL 89 (350)
Q Consensus 11 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~ 89 (350)
-+.+|.+++..+..|.++++|++|++++|... ...+..|.++++|++|++++|.+.+..|..|.++++|++|++++|.+
T Consensus 30 dLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l 109 (844)
T 3j0a_A 30 LLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGL 109 (844)
T ss_dssp EEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCC
T ss_pred ECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCC
Confidence 34467888888888999999999999888543 33477888999999999999998877788899999999999999988
Q ss_pred cCCCCcc--ccCCCCCcEEEccCCccccccC-ccccCCCCCCEEEcccCccccccchhhhcc--CCccEEecCCCccccC
Q 018826 90 GGPIPST--LFRLTNLEVLYLGFNQFNGTIP-REIGHLKNLTYLFIKVNKLTGAIRSTLGQL--TSLLQLDLSSNQLHSS 164 (350)
Q Consensus 90 ~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~--~~L~~L~l~~n~~~~~ 164 (350)
.+..+.. +.++++|++|++++|.+.+..+ ..+..+++|++|++++|.+....+..+..+ ++|+.|++++|.+.+.
T Consensus 110 ~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~ 189 (844)
T 3j0a_A 110 SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSR 189 (844)
T ss_dssp SSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCC
T ss_pred CcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccc
Confidence 7655443 7888999999999998886654 568889999999999888876655555544 5555555555554443
Q ss_pred ccccccCC--------------------------------------------------------------------CCCC
Q 018826 165 IPLEIGNL--------------------------------------------------------------------SALE 176 (350)
Q Consensus 165 ~~~~l~~~--------------------------------------------------------------------~~L~ 176 (350)
.+..+..+ ++++
T Consensus 190 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~ 269 (844)
T 3j0a_A 190 VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVR 269 (844)
T ss_dssp CCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCC
T ss_pred cccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCcc
Confidence 33333222 3445
Q ss_pred EEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCc
Q 018826 177 ELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNS 256 (350)
Q Consensus 177 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~ 256 (350)
.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|+
T Consensus 270 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 349 (844)
T 3j0a_A 270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH 349 (844)
T ss_dssp EEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC
T ss_pred EEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCC
Confidence 55555555444444445555555555555555554444455555555555555555554444555555555555555555
Q ss_pred CcccCchhhcccCCCCEEEccccccccccCCccccccc-CCCCCcceecCCCCCCCCCCcccCCC
Q 018826 257 LDGTIRPEMGEILLLQNLDLSHNNLSGTITKTLCPMHS-DMSFNRLEGEIPSNLRDNPPKSFAGN 320 (350)
Q Consensus 257 i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p~~~~~~~~-~l~~N~l~~~ip~~~~~~~~~~~~~n 320 (350)
+.+..+..+..+++|+.|++++|.+++... +..... ++++|+++ .+|.....+..+.+.+|
T Consensus 350 i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~--~~~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N 411 (844)
T 3j0a_A 350 IAIIQDQTFKFLEKLQTLDLRDNALTTIHF--IPSIPDIFLSGNKLV-TLPKINLTANLIHLSEN 411 (844)
T ss_dssp CCCCCSSCSCSCCCCCEEEEETCCSCCCSS--CCSCSEEEEESCCCC-CCCCCCTTCCEEECCSC
T ss_pred CCccChhhhcCCCCCCEEECCCCCCCcccC--CCCcchhccCCCCcc-cccccccccceeecccC
Confidence 554444445555555555555555543211 111111 55555555 45555555555666665
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.4e-32 Score=265.43 Aligned_cols=269 Identities=24% Similarity=0.254 Sum_probs=172.3
Q ss_pred CCCCcceecCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccC
Q 018826 12 QPYTENTCTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGG 91 (350)
Q Consensus 12 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~ 91 (350)
+.+|.+++..+..|.++++|++|++++|.+++..++.+.++++|++|++++|.+....+..|.++++|++|++++|.+.+
T Consensus 32 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~ 111 (680)
T 1ziw_A 32 LTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK 111 (680)
T ss_dssp CCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC
T ss_pred CCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCc
Confidence 34566666666677788888888888888877777777778888888888887775555567788888888888887776
Q ss_pred CCCccccCCCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhh--ccCCccEEecCCCccccCccccc
Q 018826 92 PIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLG--QLTSLLQLDLSSNQLHSSIPLEI 169 (350)
Q Consensus 92 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~l 169 (350)
..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+. .+++|+.|++++|.+.+..+..+
T Consensus 112 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 191 (680)
T 1ziw_A 112 IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF 191 (680)
T ss_dssp CCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGG
T ss_pred cChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhh
Confidence 6667777788888888888877776666777778888888877777655444433 34566677776666554433322
Q ss_pred ---------------------------------------------------cCCC--CCCEEEccCCcccccCCcccCCC
Q 018826 170 ---------------------------------------------------GNLS--ALEELDLSDNKIHGIIPDELTKL 196 (350)
Q Consensus 170 ---------------------------------------------------~~~~--~L~~L~l~~n~~~~~~~~~~~~~ 196 (350)
..++ +|+.|++++|.+++..+..+..+
T Consensus 192 ~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l 271 (680)
T 1ziw_A 192 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWL 271 (680)
T ss_dssp GGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTC
T ss_pred hhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCc
Confidence 2222 25555555555555555555555
Q ss_pred CCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccc-----cCC----ccccCCCCCCEEECCCCcCcccCchhhcc
Q 018826 197 SQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGG-----SIP----TEIGNCSELKNLTLNHNSLDGTIRPEMGE 267 (350)
Q Consensus 197 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~-----~~~----~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 267 (350)
++|++|++++|.+.+..+..+..+++|+.|++++|...+ .+| ..+..+++|++|++++|++++..+..+..
T Consensus 272 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 351 (680)
T 1ziw_A 272 PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351 (680)
T ss_dssp TTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTT
T ss_pred ccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhcc
Confidence 666666666665555545445555555555554433221 111 14455666677777777776665555666
Q ss_pred cCCCCEEEccccc
Q 018826 268 ILLLQNLDLSHNN 280 (350)
Q Consensus 268 ~~~L~~L~l~~N~ 280 (350)
+++|++|++++|.
T Consensus 352 l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 352 LINLKYLSLSNSF 364 (680)
T ss_dssp CTTCCEEECTTCB
T ss_pred ccCCcEEECCCCc
Confidence 6666666665554
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.8e-32 Score=260.52 Aligned_cols=299 Identities=24% Similarity=0.249 Sum_probs=207.1
Q ss_pred CCcceecCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCC
Q 018826 14 YTENTCTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPI 93 (350)
Q Consensus 14 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 93 (350)
+++++. +|..+. ++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|.+.. +
T Consensus 40 ~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l 115 (562)
T 3a79_B 40 NRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-I 115 (562)
T ss_dssp TSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE-E
T ss_pred CCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc-c
Confidence 444443 565554 677777777777776666667777777777777777776666677777777777777777663 3
Q ss_pred CccccCCCCCcEEEccCCccccc-cCccccCCCCCCEEEcccCccccccchhhhccCCc--cEEecCCCcc--ccCcccc
Q 018826 94 PSTLFRLTNLEVLYLGFNQFNGT-IPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSL--LQLDLSSNQL--HSSIPLE 168 (350)
Q Consensus 94 ~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L--~~L~l~~n~~--~~~~~~~ 168 (350)
|.. .+++|++|++++|.+.+. .|..+..+++|++|++++|.+... .+..+++| +.|++++|.+ .+..+..
T Consensus 116 p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~ 190 (562)
T 3a79_B 116 SCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETES 190 (562)
T ss_dssp CSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCE
T ss_pred Ccc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCccc
Confidence 333 567777777777777653 245677777777777777766542 23333333 5666555544 2222222
Q ss_pred ccCC----------------------------------------------------------------------------
Q 018826 169 IGNL---------------------------------------------------------------------------- 172 (350)
Q Consensus 169 l~~~---------------------------------------------------------------------------- 172 (350)
+..+
T Consensus 191 l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~ 270 (562)
T 3a79_B 191 LQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLF 270 (562)
T ss_dssp EEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHH
T ss_pred ccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHH
Confidence 2111
Q ss_pred -----CCCCEEEccCCcccccCCccc-----------------------------------------------------C
Q 018826 173 -----SALEELDLSDNKIHGIIPDEL-----------------------------------------------------T 194 (350)
Q Consensus 173 -----~~L~~L~l~~n~~~~~~~~~~-----------------------------------------------------~ 194 (350)
++|+.|++++|.+++..|..+ .
T Consensus 271 ~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 350 (562)
T 3a79_B 271 QFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPP 350 (562)
T ss_dssp HHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCS
T ss_pred HhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCcc
Confidence 144455555554443333222 6
Q ss_pred CCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCccccc--CCccccCCCCCCEEECCCCcCcccCc-hhhcccCCC
Q 018826 195 KLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGS--IPTEIGNCSELKNLTLNHNSLDGTIR-PEMGEILLL 271 (350)
Q Consensus 195 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~--~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~~L 271 (350)
.+++|++|++++|.+++..|..+..+++|+.|++++|.+++. .|..+..+++|+.|++++|++++.++ ..+..+++|
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 678999999999999987888899999999999999999853 34568889999999999999997344 457788999
Q ss_pred CEEEccccccccccCCccc-cccc-CCCCCcceecCCCCC---CCCCCcccCCCCC
Q 018826 272 QNLDLSHNNLSGTITKTLC-PMHS-DMSFNRLEGEIPSNL---RDNPPKSFAGNTG 322 (350)
Q Consensus 272 ~~L~l~~N~i~~~~p~~~~-~~~~-~l~~N~l~~~ip~~~---~~~~~~~~~~n~~ 322 (350)
+.|++++|++++.+|..+. .... ++++|+++ .+|..+ ..+..+++.+|..
T Consensus 431 ~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l 485 (562)
T 3a79_B 431 LVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL 485 (562)
T ss_dssp CEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCC
T ss_pred CEEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCC
Confidence 9999999999988888775 3333 99999999 788866 6778888998843
No 32
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.6e-31 Score=237.15 Aligned_cols=281 Identities=25% Similarity=0.355 Sum_probs=205.1
Q ss_pred CcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcEEEcc
Q 018826 30 NLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLG 109 (350)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 109 (350)
+++.++++++.++. .|..+ .+.|++|++++|.+++..+..|.++++|++|++++|.+.+..|..|..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~-lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCS-CCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccc-cCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 67888888887773 34433 3678888888888886666678888888888888888887777778888888888888
Q ss_pred CCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCcccc--CccccccCCCCCCEEEccCCcccc
Q 018826 110 FNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHS--SIPLEIGNLSALEELDLSDNKIHG 187 (350)
Q Consensus 110 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l~~n~~~~ 187 (350)
+|.++. .+..+. ++|++|++++|.+.......+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.++.
T Consensus 109 ~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 888773 343332 688888888888887777777888888888888887753 455667778888888888888774
Q ss_pred cCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccCchhhcc
Q 018826 188 IIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGE 267 (350)
Q Consensus 188 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 267 (350)
. +..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+..
T Consensus 186 l-~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 186 I-PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp C-CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred C-Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence 3 33332 67888888888888777777888888888888888888666667777888888888888888 56667777
Q ss_pred cCCCCEEEccccccccccCCcccccc------c----CCCCCccee--cCCCCC---CCCCCcccCCC
Q 018826 268 ILLLQNLDLSHNNLSGTITKTLCPMH------S----DMSFNRLEG--EIPSNL---RDNPPKSFAGN 320 (350)
Q Consensus 268 ~~~L~~L~l~~N~i~~~~p~~~~~~~------~----~l~~N~l~~--~ip~~~---~~~~~~~~~~n 320 (350)
+++|++|++++|+|++..+..|+... . ++++|.+.. ..|..| ..+..+.+.+|
T Consensus 262 l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 88888888888888877777665431 1 677776642 223333 34555555555
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.3e-31 Score=239.45 Aligned_cols=296 Identities=23% Similarity=0.385 Sum_probs=223.7
Q ss_pred ccccccCCCCcceecCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecc
Q 018826 6 HQGQDIQPYTENTCTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVR 85 (350)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~ 85 (350)
+.++.+.........++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+... + .+..+++|++|+++
T Consensus 44 ~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~-~-~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI-S-ALQNLTNLRELYLN 118 (347)
T ss_dssp TTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEEECT
T ss_pred ccccEEEEeCCccccch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc-h-HHcCCCcCCEEECc
Confidence 34444333333333444 37778888888888888875433 78888889999988888743 3 57888889999998
Q ss_pred cccccCCCCccccCCCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCc
Q 018826 86 NNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSI 165 (350)
Q Consensus 86 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 165 (350)
+|.+.+.. . +..+++|++|++++|...... ..+..+++|++|++++|.+..... +..+++|+.|++++|.+.+..
T Consensus 119 ~n~i~~~~-~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~ 193 (347)
T 4fmz_A 119 EDNISDIS-P-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDIS 193 (347)
T ss_dssp TSCCCCCG-G-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCG
T ss_pred CCcccCch-h-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccccc
Confidence 88887543 2 778888889988888655333 347888889999998888776533 778888999999888876443
Q ss_pred cccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCC
Q 018826 166 PLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCS 245 (350)
Q Consensus 166 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~ 245 (350)
+ +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..++
T Consensus 194 ~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~ 265 (347)
T 4fmz_A 194 P--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLT 265 (347)
T ss_dssp G--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCT
T ss_pred c--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCC
Confidence 3 6778889999999888875533 7788889999999998885433 78888999999999988743 4577889
Q ss_pred CCCEEECCCCcCcccCchhhcccCCCCEEEccccccccccCCccccccc----CCCCCcceecCC-CCCCCCCCcccCCC
Q 018826 246 ELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTITKTLCPMHS----DMSFNRLEGEIP-SNLRDNPPKSFAGN 320 (350)
Q Consensus 246 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p~~~~~~~~----~l~~N~l~~~ip-~~~~~~~~~~~~~n 320 (350)
+|+.|++++|++++. ..+..+++|+.|++++|++++..|..+..+.. ++++|++++..| ..+..+..+++.+|
T Consensus 266 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 266 KLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQ 343 (347)
T ss_dssp TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC
T ss_pred CcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhhccceeehhhh
Confidence 999999999998864 45778889999999999998888777766554 888998887666 22377788888888
Q ss_pred C
Q 018826 321 T 321 (350)
Q Consensus 321 ~ 321 (350)
+
T Consensus 344 ~ 344 (347)
T 4fmz_A 344 V 344 (347)
T ss_dssp -
T ss_pred c
Confidence 4
No 34
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.4e-32 Score=260.54 Aligned_cols=167 Identities=24% Similarity=0.240 Sum_probs=140.9
Q ss_pred ecCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCcccc
Q 018826 19 CTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLF 98 (350)
Q Consensus 19 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 98 (350)
..+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.+..|..|.++++|++|++++|.+.+..+..|.
T Consensus 18 ~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 95 (549)
T 2z81_A 18 TSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG 95 (549)
T ss_dssp SSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHT
T ss_pred ccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhc
Confidence 35666654 7899999999999988888999999999999999999988888999999999999999999988777799
Q ss_pred CCCCCcEEEccCCccccc-cCccccCCCCCCEEEcccCc-cccccchhhhccCCccEEecCCCccccCccccccC-----
Q 018826 99 RLTNLEVLYLGFNQFNGT-IPREIGHLKNLTYLFIKVNK-LTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGN----- 171 (350)
Q Consensus 99 ~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~----- 171 (350)
.+++|++|++++|.+++. .+..+..+++|++|++++|. +.......+.++++|+.|++++|.+.+..+..+..
T Consensus 96 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 175 (549)
T 2z81_A 96 PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175 (549)
T ss_dssp TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCc
Confidence 999999999999999863 45678999999999999998 45454567899999999999999887655555443
Q ss_pred -------------------CCCCCEEEccCCcccc
Q 018826 172 -------------------LSALEELDLSDNKIHG 187 (350)
Q Consensus 172 -------------------~~~L~~L~l~~n~~~~ 187 (350)
+++|+.|++++|.+++
T Consensus 176 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp EEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred eEecccCcccccchhhHhhcccccEEEccCCcccc
Confidence 4566677776666554
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4e-32 Score=259.59 Aligned_cols=290 Identities=20% Similarity=0.178 Sum_probs=244.0
Q ss_pred CCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcEE
Q 018826 27 SLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVL 106 (350)
Q Consensus 27 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 106 (350)
.+++++.++++++.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 45789999999999987777778899999999999999998878899999999999999999998888889999999999
Q ss_pred EccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCC---
Q 018826 107 YLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDN--- 183 (350)
Q Consensus 107 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n--- 183 (350)
++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|+.|++++|.+.+... ..+++|+.|++++|
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL---SLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCG---GGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcCh---hhhhhhhhhhcccCccc
Confidence 999999997766668999999999999999998888889999999999999999875432 33445555555544
Q ss_pred ----------------cccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCC
Q 018826 184 ----------------KIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSEL 247 (350)
Q Consensus 184 ----------------~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L 247 (350)
.+..... ...++|+.|++++|.+++ +..+..+++|+.|++++|.+++..|..+..+++|
T Consensus 206 ~l~~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 280 (597)
T 3oja_B 206 TLAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 280 (597)
T ss_dssp EEECCTTCSEEECCSSCCCEEEC---SCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC
T ss_pred cccCCchhheeeccCCccccccc---ccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCC
Confidence 4443221 123578999999998885 3678899999999999999998889999999999
Q ss_pred CEEECCCCcCcccCchhhcccCCCCEEEccccccccccCCccccccc----CCCCCcceecCCCCCCCCCCcccCCCCCC
Q 018826 248 KNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTITKTLCPMHS----DMSFNRLEGEIPSNLRDNPPKSFAGNTGL 323 (350)
Q Consensus 248 ~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p~~~~~~~~----~l~~N~l~~~ip~~~~~~~~~~~~~n~~~ 323 (350)
+.|++++|.+++ ++..+..+++|+.|++++|.++ .+|..+..+.. ++++|.+++.-+..+..+..+.+.+||+.
T Consensus 281 ~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 281 ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp CEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEE
T ss_pred CEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCCC
Confidence 999999999996 4666677899999999999998 56666654444 99999999765666689999999999988
Q ss_pred ccc
Q 018826 324 CGH 326 (350)
Q Consensus 324 ~~~ 326 (350)
|..
T Consensus 359 ~~~ 361 (597)
T 3oja_B 359 CNS 361 (597)
T ss_dssp HHH
T ss_pred Chh
Confidence 853
No 36
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=2.7e-31 Score=235.96 Aligned_cols=280 Identities=23% Similarity=0.343 Sum_probs=226.8
Q ss_pred CcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcEEEcc
Q 018826 30 NLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLG 109 (350)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 109 (350)
+++.++++++.++ ..|..+ .++|++|++++|.+....+..|.++++|++|++++|.+.+..+..|..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 6899999999887 444444 3789999999999987777789999999999999999988888889999999999999
Q ss_pred CCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCcccc--CccccccCCCCCCEEEccCCcccc
Q 018826 110 FNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHS--SIPLEIGNLSALEELDLSDNKIHG 187 (350)
Q Consensus 110 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l~~n~~~~ 187 (350)
+|.++. ++..+. ++|++|++++|.+.......+..+++|+.|++++|.+.. ..+..+... +|+.|++++|.+++
T Consensus 111 ~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 999884 444443 899999999999988777778899999999999998853 556667666 89999999999886
Q ss_pred cCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccCchhhcc
Q 018826 188 IIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGE 267 (350)
Q Consensus 188 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 267 (350)
. +..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..
T Consensus 187 l-~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 187 I-PKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp C-CSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred c-Ccccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 4 33333 68999999999999877788899999999999999999777778888999999999999998 56777888
Q ss_pred cCCCCEEEccccccccccCCcccccc---------c-CCCCCcce--ecCCCCC---CCCCCcccCCC
Q 018826 268 ILLLQNLDLSHNNLSGTITKTLCPMH---------S-DMSFNRLE--GEIPSNL---RDNPPKSFAGN 320 (350)
Q Consensus 268 ~~~L~~L~l~~N~i~~~~p~~~~~~~---------~-~l~~N~l~--~~ip~~~---~~~~~~~~~~n 320 (350)
+++|+.|++++|+|++..+..++... . ++++|.++ +..|..+ ..+..+.+.+|
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 99999999999999988877776542 1 78888776 3344434 56667777766
No 37
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=6.5e-31 Score=233.32 Aligned_cols=272 Identities=20% Similarity=0.286 Sum_probs=205.0
Q ss_pred cCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccC
Q 018826 20 TIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFR 99 (350)
Q Consensus 20 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 99 (350)
.+|..+. +++++|++++|.+++..+..+..+++|++|++++|.+.+..|..|.++++|++|++++|.+.. .|..+.
T Consensus 45 ~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~- 120 (330)
T 1xku_A 45 KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP- 120 (330)
T ss_dssp SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSCC-
T ss_pred ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhhc-
Confidence 4555554 678888888888887777778888888888888888887778888888888888888888774 333332
Q ss_pred CCCCcEEEccCCccccccCccccCCCCCCEEEcccCcccc--ccchhhhccCCccEEecCCCccccCccccccCCCCCCE
Q 018826 100 LTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTG--AIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEE 177 (350)
Q Consensus 100 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 177 (350)
++|++|++++|.+.+..+..+..+++|++|++++|.+.. .....+.++++|+.|++++|.+.. .|..+. ++|+.
T Consensus 121 -~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~ 196 (330)
T 1xku_A 121 -KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTE 196 (330)
T ss_dssp -TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSE
T ss_pred -ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCE
Confidence 688888888888887766678888888888888888754 445667788888888888888763 444332 78888
Q ss_pred EEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcC
Q 018826 178 LDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSL 257 (350)
Q Consensus 178 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i 257 (350)
|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++
T Consensus 197 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp EECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcC
Confidence 888888888777778888888888888888888776667888888888888888888 6777788888888888888888
Q ss_pred cccCchhhcc------cCCCCEEEcccccccc--ccCCccccccc----CCCCCc
Q 018826 258 DGTIRPEMGE------ILLLQNLDLSHNNLSG--TITKTLCPMHS----DMSFNR 300 (350)
Q Consensus 258 ~~~~~~~~~~------~~~L~~L~l~~N~i~~--~~p~~~~~~~~----~l~~N~ 300 (350)
++..+..+.. .+.++.+++++|.+.. ..|..|..... ++++|+
T Consensus 276 ~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 276 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 8666555533 3678888888888753 33344433222 666653
No 38
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1.9e-31 Score=236.97 Aligned_cols=260 Identities=23% Similarity=0.322 Sum_probs=163.4
Q ss_pred cCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccC
Q 018826 20 TIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFR 99 (350)
Q Consensus 20 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 99 (350)
.+|..+. ++++.|++++|.+++..+..+..+++|++|++++|.++...|..|.++++|++|++++|.+... |..+.
T Consensus 47 ~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~- 122 (332)
T 2ft3_A 47 AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI-PPNLP- 122 (332)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSC-CSSCC-
T ss_pred ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCcc-Ccccc-
Confidence 4454443 5667777777776655566666777777777777776655566666777777777777766633 33222
Q ss_pred CCCCcEEEccCCccccccCccccCCCCCCEEEcccCcccc--ccchhhhccCCccEEecCCCccccCccccccCCCCCCE
Q 018826 100 LTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTG--AIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEE 177 (350)
Q Consensus 100 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 177 (350)
++|++|++++|.+....+..+..+++|++|++++|.+.. ..+..+..+ +|+.|++++|.+.+ +|..+. ++|+.
T Consensus 123 -~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~ 197 (332)
T 2ft3_A 123 -SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNE 197 (332)
T ss_dssp -TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSC
T ss_pred -ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCE
Confidence 567777777777665555556667777777777766643 333444444 67777777776653 333332 56677
Q ss_pred EEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcC
Q 018826 178 LDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSL 257 (350)
Q Consensus 178 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i 257 (350)
|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++
T Consensus 198 L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l 276 (332)
T 2ft3_A 198 LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276 (332)
T ss_dssp CBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCC
Confidence 777777766665566666777777777777776655556666677777777777776 5555566667777777777777
Q ss_pred cccCchhhcc------cCCCCEEEccccccc--cccCCcc
Q 018826 258 DGTIRPEMGE------ILLLQNLDLSHNNLS--GTITKTL 289 (350)
Q Consensus 258 ~~~~~~~~~~------~~~L~~L~l~~N~i~--~~~p~~~ 289 (350)
++..+..+.. .+.|+.+++++|++. +..|..|
T Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~ 316 (332)
T 2ft3_A 277 TKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF 316 (332)
T ss_dssp CBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGG
T ss_pred CccChhHccccccccccccccceEeecCcccccccCcccc
Confidence 6554444433 245667777777665 3444433
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=2.6e-30 Score=231.01 Aligned_cols=278 Identities=27% Similarity=0.362 Sum_probs=230.9
Q ss_pred ccccccccC-CCCcceecCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEE
Q 018826 4 QFHQGQDIQ-PYTENTCTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRL 82 (350)
Q Consensus 4 ~~~~~~~~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L 82 (350)
.++.++.+. .+|.+++ ++. +..+++|++|++++|.+++. +.+..+++|++|++++|.+....+ +..+++|++|
T Consensus 64 ~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L 137 (347)
T 4fmz_A 64 YLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISP--LANLTKMYSL 137 (347)
T ss_dssp GCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEE
T ss_pred hcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCchh--hccCCceeEE
Confidence 455666643 4555554 444 89999999999999999854 468999999999999999985543 8899999999
Q ss_pred ecccccccCCCCccccCCCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccc
Q 018826 83 FVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLH 162 (350)
Q Consensus 83 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 162 (350)
++++|...... ..+..+++|++|++.+|.+.+..+ +..+++|++|++++|.+..... +..+++|+.+++++|.+.
T Consensus 138 ~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 212 (347)
T 4fmz_A 138 NLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT 212 (347)
T ss_dssp ECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred ECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCC
Confidence 99999765444 448899999999999999885533 8889999999999999986643 788999999999999987
Q ss_pred cCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCcccc
Q 018826 163 SSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIG 242 (350)
Q Consensus 163 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~ 242 (350)
+..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|++|++++|.+++. ..+.
T Consensus 213 ~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~ 284 (347)
T 4fmz_A 213 DITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLN 284 (347)
T ss_dssp CCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGG
T ss_pred CCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhc
Confidence 5443 7888999999999999986544 88999999999999999854 4688999999999999999854 4578
Q ss_pred CCCCCCEEECCCCcCcccCchhhcccCCCCEEEccccccccccCCccccccc----CCCCCcce
Q 018826 243 NCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTITKTLCPMHS----DMSFNRLE 302 (350)
Q Consensus 243 ~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p~~~~~~~~----~l~~N~l~ 302 (350)
.+++|+.|++++|++++..+..+..+++|+.|++++|++++..| +..+.. ++++|.++
T Consensus 285 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 285 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 89999999999999998888889999999999999999998877 333322 89999876
No 40
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=9.8e-30 Score=236.15 Aligned_cols=142 Identities=26% Similarity=0.413 Sum_probs=66.3
Q ss_pred ccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCC
Q 018826 169 IGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELK 248 (350)
Q Consensus 169 l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~ 248 (350)
+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+
T Consensus 239 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 312 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLT 312 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCS
T ss_pred hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCC
Confidence 3344444555555444443222 4444555555555555543222 4445555555555555543222 44455555
Q ss_pred EEECCCCcCcccCchhhcccCCCCEEEccccccccccCCccccccc----CCCCCcceecCCCCC-CCCCCcccCCC
Q 018826 249 NLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTITKTLCPMHS----DMSFNRLEGEIPSNL-RDNPPKSFAGN 320 (350)
Q Consensus 249 ~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p~~~~~~~~----~l~~N~l~~~ip~~~-~~~~~~~~~~n 320 (350)
.|++++|++++..+ +..+++|+.|++++|++++. ..+..+.. ++++|++++..|-.- ..+..+.+.+|
T Consensus 313 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 313 YLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ 385 (466)
T ss_dssp EEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCE
T ss_pred EEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCC
Confidence 55555555554332 34455555555555555543 12222222 555666655444111 44444555555
No 41
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=2.4e-30 Score=227.24 Aligned_cols=278 Identities=24% Similarity=0.278 Sum_probs=198.5
Q ss_pred CEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCC--CCccccCCCCCcEEEcc
Q 018826 32 EVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGP--IPSTLFRLTNLEVLYLG 109 (350)
Q Consensus 32 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~ 109 (350)
+.++++++.++.. |..+ .++|++|++++|.+....+..|.++++|++|++++|.+... .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~i-p~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSV-PTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccC-CCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 4567777766633 3332 25677888877777755555567777788888877776533 14455567788888888
Q ss_pred CCccccccCccccCCCCCCEEEcccCccccccc-hhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCcccc-
Q 018826 110 FNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIR-STLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHG- 187 (350)
Q Consensus 110 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~- 187 (350)
+|.+.. .+..+..+++|++|++++|.+..... ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+
T Consensus 87 ~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 877763 44557777888888888877776543 467777888888888888776677777788888888888888775
Q ss_pred cCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccCchhhcc
Q 018826 188 IIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGE 267 (350)
Q Consensus 188 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 267 (350)
..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 245 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence 46677888888888888888888777778888888888888888888666667788888888888888888877777777
Q ss_pred cC-CCCEEEccccccccccCCc-cccc----cc-CCCCCcceecCCCCCCCCC
Q 018826 268 IL-LLQNLDLSHNNLSGTITKT-LCPM----HS-DMSFNRLEGEIPSNLRDNP 313 (350)
Q Consensus 268 ~~-~L~~L~l~~N~i~~~~p~~-~~~~----~~-~l~~N~l~~~ip~~~~~~~ 313 (350)
++ +|+.|++++|++++.-+.. +..+ .. .+..+.+....|+.+...+
T Consensus 246 ~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~ 298 (306)
T 2z66_A 246 FPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP 298 (306)
T ss_dssp CCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCB
T ss_pred hhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCce
Confidence 74 8888999888887643311 1111 11 3344556656665544433
No 42
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=2.2e-29 Score=233.75 Aligned_cols=191 Identities=32% Similarity=0.475 Sum_probs=148.5
Q ss_pred ccCCCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCC
Q 018826 97 LFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALE 176 (350)
Q Consensus 97 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 176 (350)
+..+++|++|++++|.+.+..+ +..+++|++|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|+
T Consensus 195 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 268 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLT 268 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCS
T ss_pred hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCC
Confidence 3444555555555555543322 44566666666666666544 456778889999999888875443 78899999
Q ss_pred EEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCc
Q 018826 177 ELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNS 256 (350)
Q Consensus 177 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~ 256 (350)
.|++++|.+++..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++..| +..+++|+.|++++|+
T Consensus 269 ~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~ 342 (466)
T 1o6v_A 269 ELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNK 342 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSC
T ss_pred EEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCc
Confidence 99999999986544 8889999999999999986544 7889999999999999996654 6789999999999999
Q ss_pred CcccCchhhcccCCCCEEEccccccccccCCccccccc----CCCCCccee
Q 018826 257 LDGTIRPEMGEILLLQNLDLSHNNLSGTITKTLCPMHS----DMSFNRLEG 303 (350)
Q Consensus 257 i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p~~~~~~~~----~l~~N~l~~ 303 (350)
+++. ..+..+++|+.|++++|++++..| +..+.. ++++|.+++
T Consensus 343 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 343 VSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred cCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 9965 477889999999999999998887 433333 899999885
No 43
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=9.1e-30 Score=223.51 Aligned_cols=271 Identities=25% Similarity=0.220 Sum_probs=228.4
Q ss_pred eecCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCC--cchhccCCCCCcEEecccccccCCCCc
Q 018826 18 TCTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGE--LPQEIENLKSLIRLFVRNNTLGGPIPS 95 (350)
Q Consensus 18 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~ 95 (350)
...+|..+. ++|++|+++++.++...+..+..+++|++|++++|.+... .+..+..+++|++|++++|.+.. .+.
T Consensus 19 l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~ 95 (306)
T 2z66_A 19 LTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSS 95 (306)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEE
T ss_pred cccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-Chh
Confidence 345566554 6899999999999977667789999999999999998743 25677789999999999999874 556
Q ss_pred cccCCCCCcEEEccCCccccccC-ccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCcccc-CccccccCCC
Q 018826 96 TLFRLTNLEVLYLGFNQFNGTIP-REIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHS-SIPLEIGNLS 173 (350)
Q Consensus 96 ~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~l~~~~ 173 (350)
.+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+ ..+..+..++
T Consensus 96 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 175 (306)
T 2z66_A 96 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175 (306)
T ss_dssp EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCc
Confidence 68899999999999999986654 578899999999999999988877888999999999999999876 5788899999
Q ss_pred CCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCC-CCCEEEC
Q 018826 174 ALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCS-ELKNLTL 252 (350)
Q Consensus 174 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~-~L~~L~l 252 (350)
+|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..++ +|++|++
T Consensus 176 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L 255 (306)
T 2z66_A 176 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 255 (306)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEEC
T ss_pred CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEc
Confidence 999999999999988888999999999999999999987777889999999999999999988888888885 9999999
Q ss_pred CCCcCcccCc--hhhcccCCCCEEEccccccccccCCcccc
Q 018826 253 NHNSLDGTIR--PEMGEILLLQNLDLSHNNLSGTITKTLCP 291 (350)
Q Consensus 253 ~~n~i~~~~~--~~~~~~~~L~~L~l~~N~i~~~~p~~~~~ 291 (350)
++|++++... .....+...+.+.+..+.+....|..+..
T Consensus 256 ~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g 296 (306)
T 2z66_A 256 TQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG 296 (306)
T ss_dssp TTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred cCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCC
Confidence 9999985432 11223344555566677777777765544
No 44
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=4.7e-29 Score=230.68 Aligned_cols=247 Identities=22% Similarity=0.225 Sum_probs=210.3
Q ss_pred cCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcEEEccC
Q 018826 31 LEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGF 110 (350)
Q Consensus 31 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 110 (350)
.+.++.++..++. .|..+ .+++++|++++|.+....+..|.++++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 56 ~~~v~c~~~~l~~-iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSE-VPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCc-cCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 4678888887774 44443 26899999999999887788899999999999999999888888888999999999999
Q ss_pred CccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCC-ccccCccccccCCCCCCEEEccCCcccccC
Q 018826 111 NQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSN-QLHSSIPLEIGNLSALEELDLSDNKIHGII 189 (350)
Q Consensus 111 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 189 (350)
|.++...+..+..+++|++|++++|.+.......+..+++|+.|+++++ .+....+..+..+++|+.|++++|.+++.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~- 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM- 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-
Confidence 9998777777888999999999999998877778889999999999884 44434445688889999999999998854
Q ss_pred CcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccCchhhcccC
Q 018826 190 PDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEIL 269 (350)
Q Consensus 190 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~ 269 (350)
..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+..++
T Consensus 212 -~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 212 -PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp -CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred -ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 3578889999999999999988888899999999999999999988888888999999999999999977777788889
Q ss_pred CCCEEEccccccc
Q 018826 270 LLQNLDLSHNNLS 282 (350)
Q Consensus 270 ~L~~L~l~~N~i~ 282 (350)
+|+.|++++|++.
T Consensus 291 ~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 291 YLVELHLHHNPWN 303 (452)
T ss_dssp TCCEEECCSSCEE
T ss_pred CCCEEEccCCCcC
Confidence 9999999999875
No 45
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=6.3e-29 Score=229.06 Aligned_cols=248 Identities=24% Similarity=0.260 Sum_probs=205.3
Q ss_pred CcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcEEEcc
Q 018826 30 NLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLG 109 (350)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 109 (350)
..+.++.++..++ .+|..+. ++++.|++++|.+....+..|.++++|++|++++|.+....+..|..+++|++|+++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 3567788887777 3444443 678899999998887777888889999999999998887777888889999999999
Q ss_pred CCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCc-cccCccccccCCCCCCEEEccCCccccc
Q 018826 110 FNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQ-LHSSIPLEIGNLSALEELDLSDNKIHGI 188 (350)
Q Consensus 110 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 188 (350)
+|.++...+..+..+++|++|++++|.+.......+..+++|+.|++++|. +....+..+..+++|+.|++++|.++..
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 998887766778888999999999998887777788888999999998844 4433445678888999999999988744
Q ss_pred CCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccCchhhccc
Q 018826 189 IPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEI 268 (350)
Q Consensus 189 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~ 268 (350)
+ .+..+++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+..+
T Consensus 201 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 201 -P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp -C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred -c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 3 47888899999999999988878888899999999999999988788888889999999999999997777778888
Q ss_pred CCCCEEEccccccc
Q 018826 269 LLLQNLDLSHNNLS 282 (350)
Q Consensus 269 ~~L~~L~l~~N~i~ 282 (350)
++|+.|++++|.+.
T Consensus 279 ~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 279 HHLERIHLHHNPWN 292 (440)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cCCCEEEcCCCCcc
Confidence 99999999999874
No 46
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.4e-30 Score=233.23 Aligned_cols=258 Identities=20% Similarity=0.172 Sum_probs=143.8
Q ss_pred CCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcEEEc
Q 018826 29 RNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYL 108 (350)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 108 (350)
++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..|..+++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 35666666666665554445566666666666666665555555666666666666666665444444555666666666
Q ss_pred cCCccccccC-ccccCCCCCCEEEcccC-ccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCccc
Q 018826 109 GFNQFNGTIP-REIGHLKNLTYLFIKVN-KLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIH 186 (350)
Q Consensus 109 ~~n~l~~~~~-~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 186 (350)
++|.+..... ..+..+++|++|++++| .+....+..+.++++|+.|++++|.+.+..+..+..+++|+.|++++|.++
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 6666553333 34555666666666665 344444445555666666666666655555555556666666666666554
Q ss_pred ccCCcccCCCCCCCEEECCCCcCccccchhh---hCCCCCCEEEccCCcccc----cCCccccCCCCCCEEECCCCcCcc
Q 018826 187 GIIPDELTKLSQLKNLNISSNLLSGQIPSAI---GKLFNLKYLDLSKNKLGG----SIPTEIGNCSELKNLTLNHNSLDG 259 (350)
Q Consensus 187 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~---~~~~~L~~L~l~~n~i~~----~~~~~~~~~~~L~~L~l~~n~i~~ 259 (350)
......+..+++|+.|++++|.+++..+..+ ...+.++.++++++.+++ .+|..+..+++|+.|++++|+++.
T Consensus 212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~ 291 (353)
T 2z80_A 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS 291 (353)
T ss_dssp THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC
T ss_pred cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc
Confidence 3332233345566666666666554332222 224455556666555543 234445566666666666666664
Q ss_pred cCchhhcccCCCCEEEccccccccccC
Q 018826 260 TIRPEMGEILLLQNLDLSHNNLSGTIT 286 (350)
Q Consensus 260 ~~~~~~~~~~~L~~L~l~~N~i~~~~p 286 (350)
..+..+..+++|++|++++|++++..|
T Consensus 292 i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 292 VPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 333334566666666666666665443
No 47
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=5.2e-29 Score=216.47 Aligned_cols=251 Identities=22% Similarity=0.212 Sum_probs=138.7
Q ss_pred CEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcEEEccCC
Q 018826 32 EVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFN 111 (350)
Q Consensus 32 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 111 (350)
++++++++.++.+ |..+ .++|++|++++|.+....+..|..+++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~i-p~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAV-PVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSC-CTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccC-CcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 4555555555532 2222 345666666666665544455556666666666666555554555555556666666555
Q ss_pred c-cccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCcccccCC
Q 018826 112 Q-FNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIP 190 (350)
Q Consensus 112 ~-l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 190 (350)
. +....+..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.+++..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~ 146 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQE------------------------LGPGLFRGLAALQYLYLQDNALQALPD 146 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCC------------------------CCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCE------------------------ECHhHhhCCcCCCEEECCCCcccccCH
Confidence 4 444434445555555555555554443 334444555555555555555554444
Q ss_pred cccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccCchhhcccCC
Q 018826 191 DELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILL 270 (350)
Q Consensus 191 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ 270 (350)
..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..+..+..+++
T Consensus 147 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 226 (285)
T 1ozn_A 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred hHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcc
Confidence 44555666666666666666444445666666666666666666555666666666666666666666555555666666
Q ss_pred CCEEEccccccccccCCccc-cccc--CCCCCcceecCCCCC
Q 018826 271 LQNLDLSHNNLSGTITKTLC-PMHS--DMSFNRLEGEIPSNL 309 (350)
Q Consensus 271 L~~L~l~~N~i~~~~p~~~~-~~~~--~l~~N~l~~~ip~~~ 309 (350)
|+.|++++|++....+.... .... ..+.+.+....|+.+
T Consensus 227 L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 227 LQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRL 268 (285)
T ss_dssp CCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGGG
T ss_pred cCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCchHh
Confidence 66666666666543322110 1111 344455555555544
No 48
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=2.6e-29 Score=218.34 Aligned_cols=248 Identities=24% Similarity=0.230 Sum_probs=168.1
Q ss_pred cceecCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEeccccc-ccCCCC
Q 018826 16 ENTCTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNT-LGGPIP 94 (350)
Q Consensus 16 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~ 94 (350)
+....+|..+. ++|+.|+++++.+++..+..+..+++|++|++++|.+.+..+..|.++++|++|++++|. +....+
T Consensus 21 ~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~ 98 (285)
T 1ozn_A 21 QGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98 (285)
T ss_dssp SCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred CCcccCCcCCC--CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCH
Confidence 33345666553 789999999999998888889999999999999999998778899999999999999997 777768
Q ss_pred ccccCCCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccCCCC
Q 018826 95 STLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSA 174 (350)
Q Consensus 95 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~ 174 (350)
..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.......+..+++|+.|++++|.+.+
T Consensus 99 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------- 167 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS----------- 167 (285)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-----------
T ss_pred HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc-----------
Confidence 889999999999999999998777788888888888888887776554455555566666665555543
Q ss_pred CCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCC
Q 018826 175 LEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNH 254 (350)
Q Consensus 175 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~ 254 (350)
..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++
T Consensus 168 -------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 168 -------------VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234 (285)
T ss_dssp -------------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCS
T ss_pred -------------cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccC
Confidence 3333344445555555555555544444555555555555555555543334455555555555555
Q ss_pred CcCcccCchhhcccCCCCEEEccccccccccCCccc
Q 018826 255 NSLDGTIRPEMGEILLLQNLDLSHNNLSGTITKTLC 290 (350)
Q Consensus 255 n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p~~~~ 290 (350)
|.+....+.. .....++.+..+.+.+....|..+.
T Consensus 235 N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 235 NPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp SCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGT
T ss_pred CCccCCCCcH-HHHHHHHhcccccCccccCCchHhC
Confidence 5554322111 1112233334555556555555443
No 49
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=1.2e-28 Score=227.69 Aligned_cols=189 Identities=29% Similarity=0.286 Sum_probs=89.6
Q ss_pred ccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCC
Q 018826 24 EIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNL 103 (350)
Q Consensus 24 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 103 (350)
.+..+++|++|++++|.+++. + +..+++|++|++++|.+++. + +.++++|++|++++|.+.+. + +..+++|
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L 129 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLL 129 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCC-C--CTTCTTC
T ss_pred hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCee-c--CCCCCcC
Confidence 344455555555555554432 1 44445555555555554432 1 44455555555555544432 1 4444555
Q ss_pred cEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCC
Q 018826 104 EVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDN 183 (350)
Q Consensus 104 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 183 (350)
++|++++|.+++. .+..+++|++|++++|...... .+..+++|+.|++++|.+.+ .+ +..+++|+.|++++|
T Consensus 130 ~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N 201 (457)
T 3bz5_A 130 TYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTN 201 (457)
T ss_dssp CEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSS
T ss_pred CEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCC
Confidence 5555555554432 1444455555555544222111 23444555555555555443 22 444455555555555
Q ss_pred cccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccc
Q 018826 184 KIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGG 235 (350)
Q Consensus 184 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 235 (350)
.+++. .+..+++|+.|++++|.+++ +| +..+++|+.|++++|.+++
T Consensus 202 ~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 202 NITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp CCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred cCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence 55433 24445555555555555553 22 4445555555555555553
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=1.1e-28 Score=228.17 Aligned_cols=238 Identities=25% Similarity=0.254 Sum_probs=214.9
Q ss_pred eecCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccc
Q 018826 18 TCTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTL 97 (350)
Q Consensus 18 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 97 (350)
...+|..+. +++++|++++|.+++..++.|.++++|++|++++|.+....+..|.++++|++|++++|.+....+..|
T Consensus 66 l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 143 (452)
T 3zyi_A 66 LSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAF 143 (452)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTS
T ss_pred cCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhh
Confidence 345666655 689999999999998888999999999999999999998888899999999999999999998877889
Q ss_pred cCCCCCcEEEccCCccccccCccccCCCCCCEEEccc-CccccccchhhhccCCccEEecCCCccccCccccccCCCCCC
Q 018826 98 FRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKV-NKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALE 176 (350)
Q Consensus 98 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 176 (350)
..+++|++|++++|.+....+..+..+++|++|++++ +.+.......+.++++|+.|++++|.+.+. + .+..+++|+
T Consensus 144 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~ 221 (452)
T 3zyi_A 144 EYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLE 221 (452)
T ss_dssp SSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCC
T ss_pred cccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-ccccccccc
Confidence 9999999999999999977777899999999999998 556656666789999999999999998743 3 578889999
Q ss_pred EEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCc
Q 018826 177 ELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNS 256 (350)
Q Consensus 177 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~ 256 (350)
.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.
T Consensus 222 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp EEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred EEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 99999999999889999999999999999999998888899999999999999999997777788899999999999998
Q ss_pred Ccc
Q 018826 257 LDG 259 (350)
Q Consensus 257 i~~ 259 (350)
+..
T Consensus 302 ~~C 304 (452)
T 3zyi_A 302 WNC 304 (452)
T ss_dssp EEC
T ss_pred cCC
Confidence 863
No 51
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=3.5e-28 Score=233.99 Aligned_cols=301 Identities=25% Similarity=0.203 Sum_probs=230.7
Q ss_pred ccccccccc-cCCCCcceecCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCc
Q 018826 2 VYQFHQGQD-IQPYTENTCTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLI 80 (350)
Q Consensus 2 ~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~ 80 (350)
|...+.+++ -+.+|.+++..+.+|.++++|++|+|++|.+++..++.|.++++|++|++++|++++..+..|.++++|+
T Consensus 72 f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~ 151 (635)
T 4g8a_A 72 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 151 (635)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccC
Confidence 456677777 3557788887788899999999999999999987778899999999999999999977777899999999
Q ss_pred EEecccccccCC-CCccccCCCCCcEEEccCCccccccCccccC------------------------------------
Q 018826 81 RLFVRNNTLGGP-IPSTLFRLTNLEVLYLGFNQFNGTIPREIGH------------------------------------ 123 (350)
Q Consensus 81 ~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~------------------------------------ 123 (350)
+|++++|.+... .|..+..+++|++|++++|.+++..+..+..
T Consensus 152 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l 231 (635)
T 4g8a_A 152 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 231 (635)
T ss_dssp EEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEE
T ss_pred eeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhh
Confidence 999999998754 4677788999999999988776433222110
Q ss_pred --------------------------------------------------------------------------------
Q 018826 124 -------------------------------------------------------------------------------- 123 (350)
Q Consensus 124 -------------------------------------------------------------------------------- 123 (350)
T Consensus 232 ~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l 311 (635)
T 4g8a_A 232 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSF 311 (635)
T ss_dssp ESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEE
T ss_pred hcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccc
Confidence
Q ss_pred ---------------CCCCCEEEcccCccccccc-------------------hhhhccCCccEEecCCCcccc------
Q 018826 124 ---------------LKNLTYLFIKVNKLTGAIR-------------------STLGQLTSLLQLDLSSNQLHS------ 163 (350)
Q Consensus 124 ---------------l~~L~~L~l~~n~~~~~~~-------------------~~~~~~~~L~~L~l~~n~~~~------ 163 (350)
...++.|++.++.+..... .....+++|+.++++.|.+..
T Consensus 312 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~ 391 (635)
T 4g8a_A 312 SLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 391 (635)
T ss_dssp EEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCH
T ss_pred cccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcccccccccccc
Confidence 0112222222222111000 001124456666665554321
Q ss_pred -------------------------------------------C-ccccccCCCCCCEEEccCCcccccCCcccCCCCCC
Q 018826 164 -------------------------------------------S-IPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQL 199 (350)
Q Consensus 164 -------------------------------------------~-~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L 199 (350)
. ....+..+.+++.++++.|.+....+..+..++.+
T Consensus 392 ~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L 471 (635)
T 4g8a_A 392 SDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 471 (635)
T ss_dssp HHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred chhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhh
Confidence 0 11234556778888888998888888888999999
Q ss_pred CEEECCCCcC-ccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEccc
Q 018826 200 KNLNISSNLL-SGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSH 278 (350)
Q Consensus 200 ~~L~l~~n~~-~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~ 278 (350)
+.|++++|.+ .+..|..+..+++|++|++++|++++..|..|.++++|++|++++|++++..+..+..+++|+.|++++
T Consensus 472 ~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~ 551 (635)
T 4g8a_A 472 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 551 (635)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTT
T ss_pred hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCC
Confidence 9999999974 445778899999999999999999988899999999999999999999988888999999999999999
Q ss_pred cccccccCCccccccc-----CCCCCcce
Q 018826 279 NNLSGTITKTLCPMHS-----DMSFNRLE 302 (350)
Q Consensus 279 N~i~~~~p~~~~~~~~-----~l~~N~l~ 302 (350)
|+|++..|..+..... ++++|.++
T Consensus 552 N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 552 NHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp SCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 9999999988876532 88888876
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.7e-28 Score=226.22 Aligned_cols=240 Identities=24% Similarity=0.279 Sum_probs=215.6
Q ss_pred cceecCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCc
Q 018826 16 ENTCTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPS 95 (350)
Q Consensus 16 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 95 (350)
.....+|..+. ++++.|++++|.++...+..|.++++|++|++++|.+....+..|.++++|++|++++|.++...+.
T Consensus 53 ~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 130 (440)
T 3zyj_A 53 KNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNG 130 (440)
T ss_dssp CCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTT
T ss_pred CCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHh
Confidence 33345676665 7899999999999988888999999999999999999988888999999999999999999977777
Q ss_pred cccCCCCCcEEEccCCccccccCccccCCCCCCEEEccc-CccccccchhhhccCCccEEecCCCccccCccccccCCCC
Q 018826 96 TLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKV-NKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSA 174 (350)
Q Consensus 96 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~ 174 (350)
.|..+++|++|++++|.+....+..+..+++|++|++++ +.+.......+.++++|+.|++++|.+. .+| .+..+++
T Consensus 131 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~ 208 (440)
T 3zyj_A 131 AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIK 208 (440)
T ss_dssp TSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSS
T ss_pred HhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcc
Confidence 899999999999999999987777899999999999998 4555556667899999999999999987 444 4788899
Q ss_pred CCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCC
Q 018826 175 LEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNH 254 (350)
Q Consensus 175 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~ 254 (350)
|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++
T Consensus 209 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288 (440)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCS
T ss_pred cCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCC
Confidence 99999999999988899999999999999999999988888999999999999999999977777888999999999999
Q ss_pred CcCcc
Q 018826 255 NSLDG 259 (350)
Q Consensus 255 n~i~~ 259 (350)
|.+..
T Consensus 289 Np~~C 293 (440)
T 3zyj_A 289 NPWNC 293 (440)
T ss_dssp SCEEC
T ss_pred CCccC
Confidence 99863
No 53
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=3.8e-28 Score=224.24 Aligned_cols=267 Identities=24% Similarity=0.246 Sum_probs=182.9
Q ss_pred eecCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccc
Q 018826 18 TCTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTL 97 (350)
Q Consensus 18 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 97 (350)
.+..+..+.++++|++|+++++.+++. + .+..+++|++|++++|.+++. + +..+++|++|++++|.+.+. + +
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~ 102 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--V 102 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--C
T ss_pred CcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--c
Confidence 334444666778888888888888754 3 577788888888888888754 3 67788888888888887754 2 6
Q ss_pred cCCCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCCE
Q 018826 98 FRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEE 177 (350)
Q Consensus 98 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 177 (350)
..+++|++|++++|.+++. + +..+++|++|++++|.+... .+..+++|+.|++++|...+.. .+..+++|+.
T Consensus 103 ~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~ 174 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTT 174 (457)
T ss_dssp TTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCE
T ss_pred CCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCE
Confidence 7788888888888887754 2 77788888888888887764 3667788888888887543333 4667788888
Q ss_pred EEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcC
Q 018826 178 LDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSL 257 (350)
Q Consensus 178 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i 257 (350)
|++++|.+++. + +..+++|+.|++++|.+++. .+..+++|+.|++++|++++ +| +..+++|+.|++++|++
T Consensus 175 L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 175 LDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp EECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCC
T ss_pred EECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcC
Confidence 88888887753 2 67778888888888888754 36777888888888888875 44 66778888888888888
Q ss_pred cccCchhhcccC-------CCCEEEccccccccccCCcccccc-c-CCCCCcceecCCCCC
Q 018826 258 DGTIRPEMGEIL-------LLQNLDLSHNNLSGTITKTLCPMH-S-DMSFNRLEGEIPSNL 309 (350)
Q Consensus 258 ~~~~~~~~~~~~-------~L~~L~l~~N~i~~~~p~~~~~~~-~-~l~~N~l~~~ip~~~ 309 (350)
++..+..+..+. +|+.+++++|.+.+.+|..-+... . ++++|...|.+|...
T Consensus 246 ~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~ 306 (457)
T 3bz5_A 246 TELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQA 306 (457)
T ss_dssp SCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTT
T ss_pred CCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCC
Confidence 765544433332 344455555554444442221111 1 555555444554433
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2.7e-29 Score=224.93 Aligned_cols=277 Identities=19% Similarity=0.222 Sum_probs=227.1
Q ss_pred CCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcE
Q 018826 26 GSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEV 105 (350)
Q Consensus 26 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 105 (350)
..|+.....+++++.++. .|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..|..+++|++
T Consensus 28 ~~C~~~~~c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp CEECTTSEEECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCCeEeeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 356667778999999884 444443 58999999999999776778999999999999999999888888999999999
Q ss_pred EEccCCccccccCccccCCCCCCEEEcccCccccccc-hhhhccCCccEEecCCCc-cccCccccccCCCCCCEEEccCC
Q 018826 106 LYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIR-STLGQLTSLLQLDLSSNQ-LHSSIPLEIGNLSALEELDLSDN 183 (350)
Q Consensus 106 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~~~~L~~L~l~~n 183 (350)
|++++|.+++..+..+..+++|++|++++|.+..... ..+..+++|+.|++++|. +....+..+..+++|+.|++++|
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 9999999997665668999999999999999987655 578899999999999984 66555678889999999999999
Q ss_pred cccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccc---cCCCCCCEEECCCCcCcc-
Q 018826 184 KIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEI---GNCSELKNLTLNHNSLDG- 259 (350)
Q Consensus 184 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~---~~~~~L~~L~l~~n~i~~- 259 (350)
.+++..+..+..+++|++|++++|.+.......+..+++|+.|++++|.+++..+..+ ...+.++.++++++.+++
T Consensus 185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~ 264 (353)
T 2z80_A 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE 264 (353)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence 9998888899999999999999999975544556678999999999999986544433 236788999999999875
Q ss_pred ---cCchhhcccCCCCEEEccccccccccCCc-cccccc----CCCCCcceecCC
Q 018826 260 ---TIRPEMGEILLLQNLDLSHNNLSGTITKT-LCPMHS----DMSFNRLEGEIP 306 (350)
Q Consensus 260 ---~~~~~~~~~~~L~~L~l~~N~i~~~~p~~-~~~~~~----~l~~N~l~~~ip 306 (350)
.+|..+..+++|+.|++++|++++ +|.. +..... ++++|.+++..|
T Consensus 265 ~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 265 SLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred chhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 356677889999999999999994 4443 333332 777777776544
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=4.6e-28 Score=214.43 Aligned_cols=235 Identities=19% Similarity=0.242 Sum_probs=172.8
Q ss_pred CCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcEEE
Q 018826 28 LRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLY 107 (350)
Q Consensus 28 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 107 (350)
.+.++.|+++++.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 467778888888777 45556667788888888888777 66777777788888888887777 5566677777888888
Q ss_pred ccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCcccc
Q 018826 108 LGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHG 187 (350)
Q Consensus 108 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 187 (350)
+++|.+.+..|..+.. .. ....+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+++
T Consensus 157 L~~n~~~~~~p~~~~~------~~---------~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~ 220 (328)
T 4fcg_A 157 IRACPELTELPEPLAS------TD---------ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA 220 (328)
T ss_dssp EEEETTCCCCCSCSEE------EC----------CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred CCCCCCccccChhHhh------cc---------chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc
Confidence 8777666555554432 00 0122445677777777777766 566667777777888888777774
Q ss_pred cCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccCchhhcc
Q 018826 188 IIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGE 267 (350)
Q Consensus 188 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 267 (350)
.+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..
T Consensus 221 -l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~ 299 (328)
T 4fcg_A 221 -LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299 (328)
T ss_dssp -CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred -CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh
Confidence 3445777788888888888777777777888888888888888877777777888888888888888888888888888
Q ss_pred cCCCCEEEccccccc
Q 018826 268 ILLLQNLDLSHNNLS 282 (350)
Q Consensus 268 ~~~L~~L~l~~N~i~ 282 (350)
+++|+.+++..+.+.
T Consensus 300 L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 300 LPANCIILVPPHLQA 314 (328)
T ss_dssp SCTTCEEECCGGGSC
T ss_pred ccCceEEeCCHHHHH
Confidence 888888888877665
No 56
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=4.6e-28 Score=214.46 Aligned_cols=222 Identities=25% Similarity=0.296 Sum_probs=164.1
Q ss_pred CCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcEEEccCCccccccCccccCCCCCCEEEc
Q 018826 53 RNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFI 132 (350)
Q Consensus 53 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 132 (350)
+.++.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 55666666666665 44444555666666666666655 44555555666666666666555 44555555556666655
Q ss_pred ccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccc
Q 018826 133 KVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQ 212 (350)
Q Consensus 133 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 212 (350)
++|.+....+..+.. . .....+..+++|+.|++++|.++ ..|..+..+++|+.|++++|.+++
T Consensus 158 ~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~- 220 (328)
T 4fcg_A 158 RACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA- 220 (328)
T ss_dssp EEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-
T ss_pred CCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-
Confidence 554443322221111 1 11123455899999999999998 667789999999999999999995
Q ss_pred cchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEccccccccccCCccccc
Q 018826 213 IPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTITKTLCPM 292 (350)
Q Consensus 213 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p~~~~~~ 292 (350)
+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+..+
T Consensus 221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L 300 (328)
T 4fcg_A 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300 (328)
T ss_dssp CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc
Confidence 56679999999999999999998999999999999999999999999999999999999999999999999999988776
Q ss_pred cc
Q 018826 293 HS 294 (350)
Q Consensus 293 ~~ 294 (350)
..
T Consensus 301 ~~ 302 (328)
T 4fcg_A 301 PA 302 (328)
T ss_dssp CT
T ss_pred cC
Confidence 55
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=1.4e-29 Score=223.26 Aligned_cols=243 Identities=24% Similarity=0.241 Sum_probs=132.0
Q ss_pred cccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCC
Q 018826 23 KEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTN 102 (350)
Q Consensus 23 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 102 (350)
..+..+++|++|++++|.+++..++.+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+.. ..++
T Consensus 28 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~ 100 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPS 100 (317)
T ss_dssp HHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTT
T ss_pred HHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCC
Confidence 334455566666666666665555556666666666666666654332 555666666666666554321 2356
Q ss_pred CcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccc-cCCCCCCEEEcc
Q 018826 103 LEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEI-GNLSALEELDLS 181 (350)
Q Consensus 103 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l-~~~~~L~~L~l~ 181 (350)
|++|++++|.+.+..+. .+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+ ..+++|+.|+++
T Consensus 101 L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 177 (317)
T 3o53_A 101 IETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (317)
T ss_dssp CCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred cCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECC
Confidence 66666666665543222 24556666666666655544455555666666666665554434333 245556666666
Q ss_pred CCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCc-cc
Q 018826 182 DNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLD-GT 260 (350)
Q Consensus 182 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~-~~ 260 (350)
+|.+++.. ....+++|+.|++++|.+++. +..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|+++ +.
T Consensus 178 ~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~ 253 (317)
T 3o53_A 178 YNFIYDVK--GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGT 253 (317)
T ss_dssp TSCCCEEE--CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHH
T ss_pred CCcCcccc--cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcC
Confidence 66555431 222355566666666655533 233555556666666666555 34444555556666666666555 44
Q ss_pred CchhhcccCCCCEEEcccc
Q 018826 261 IRPEMGEILLLQNLDLSHN 279 (350)
Q Consensus 261 ~~~~~~~~~~L~~L~l~~N 279 (350)
.+..+..+++|+.++++++
T Consensus 254 ~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 254 LRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp HHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhccccceEEECCCc
Confidence 4444555555555555533
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=3.9e-29 Score=220.47 Aligned_cols=266 Identities=22% Similarity=0.224 Sum_probs=216.7
Q ss_pred CcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcEEEcc
Q 018826 30 NLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLG 109 (350)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 109 (350)
.++..+++.+.+.......+..+++|++|++++|.+.+..|..|..+++|++|++++|.+.+..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 35555666666654444556678899999999999998888899999999999999999976543 8899999999999
Q ss_pred CCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCcccccC
Q 018826 110 FNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGII 189 (350)
Q Consensus 110 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 189 (350)
+|.+++.. ..++|++|++++|.+...... .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 99988543 348999999999999876543 4688999999999998777778888999999999999998876
Q ss_pred Cccc-CCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccCchhhccc
Q 018826 190 PDEL-TKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEI 268 (350)
Q Consensus 190 ~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~ 268 (350)
+..+ ..+++|+.|++++|.+++. +. ...+++|++|++++|.+++ .+..+..+++|+.|++++|++++ +|..+..+
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l 236 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFS 236 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCC
T ss_pred HHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc-hhhHhhcC
Confidence 6666 4689999999999999855 32 3458999999999999994 45558889999999999999994 66778889
Q ss_pred CCCCEEEccccccc-cccCCccccccc----CCCC-CcceecCCCCC
Q 018826 269 LLLQNLDLSHNNLS-GTITKTLCPMHS----DMSF-NRLEGEIPSNL 309 (350)
Q Consensus 269 ~~L~~L~l~~N~i~-~~~p~~~~~~~~----~l~~-N~l~~~ip~~~ 309 (350)
++|+.|++++|+++ +.+|..+..... +++. +.++|..|...
T Consensus 237 ~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~ 283 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC 283 (317)
T ss_dssp TTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCC
T ss_pred CCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhcc
Confidence 99999999999998 666665554433 5553 36777666543
No 59
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=2.2e-29 Score=221.64 Aligned_cols=246 Identities=22% Similarity=0.223 Sum_probs=130.8
Q ss_pred CCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCC-CCcchhcc-------CCCCCcEEecccccccCCCCccc--
Q 018826 28 LRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLT-GELPQEIE-------NLKSLIRLFVRNNTLGGPIPSTL-- 97 (350)
Q Consensus 28 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~~-- 97 (350)
.++|+.+++++|.+ ..|..+... |+.|++++|.+. ...+..+. ++++|++|++++|.+.+..|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 34455555555555 333333222 555666665553 22333332 45666666666666655555443
Q ss_pred cCCCCCcEEEccCCccccccCccccCC-----CCCCEEEcccCccccccchhhhccCCccEEecCCCccccC--ccccc-
Q 018826 98 FRLTNLEVLYLGFNQFNGTIPREIGHL-----KNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSS--IPLEI- 169 (350)
Q Consensus 98 ~~l~~L~~L~l~~n~l~~~~~~~l~~l-----~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~l- 169 (350)
..+++|++|++++|.+++. +..+..+ ++|++|++++|.+....+..+..+++|+.|++++|.+.+. .+..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 5566666666666666544 4444443 5666666666666555555555666666666666654332 12222
Q ss_pred -cCCCCCCEEEccCCcccc---cCCcccCCCCCCCEEECCCCcCccccc-hhhhCCCCCCEEEccCCcccccCCccccCC
Q 018826 170 -GNLSALEELDLSDNKIHG---IIPDELTKLSQLKNLNISSNLLSGQIP-SAIGKLFNLKYLDLSKNKLGGSIPTEIGNC 244 (350)
Q Consensus 170 -~~~~~L~~L~l~~n~~~~---~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~ 244 (350)
..+++|+.|++++|.+++ .....+..+++|+.|++++|.+++..| ..+..+++|++|++++|.++ .+|..+.
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-- 273 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-- 273 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--
Confidence 455566666666665552 111223345566666666666654432 23444556666666666665 4444443
Q ss_pred CCCCEEECCCCcCcccCchhhcccCCCCEEEcccccccc
Q 018826 245 SELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSG 283 (350)
Q Consensus 245 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~ 283 (350)
++|++|++++|++++. |. +..+++|+.|++++|++++
T Consensus 274 ~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 5566666666666544 22 5555666666666666553
No 60
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=2e-27 Score=221.33 Aligned_cols=238 Identities=25% Similarity=0.262 Sum_probs=153.4
Q ss_pred CCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcE
Q 018826 26 GSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEV 105 (350)
Q Consensus 26 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 105 (350)
..+++|+.|++++|.+++..+..|..+++|++|++++|.+++..| |..+++|++|++++|.+.+.. ..++|++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~ 103 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIET 103 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCE
Confidence 344577777777777776666677777777777777777765444 667777777777777765332 2367777
Q ss_pred EEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCcccccc-CCCCCCEEEccCCc
Q 018826 106 LYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIG-NLSALEELDLSDNK 184 (350)
Q Consensus 106 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~-~~~~L~~L~l~~n~ 184 (350)
|++++|.+.+..+. .+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+. .+++|+.|++++|.
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 77777777654332 346677777777777666556666677777777777776655555554 56677777777777
Q ss_pred ccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCc-ccCch
Q 018826 185 IHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLD-GTIRP 263 (350)
Q Consensus 185 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~ 263 (350)
+++.. ....+++|+.|++++|.+++..+ .+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+. +.++.
T Consensus 181 l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 181 IYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp CCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred ccccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHH
Confidence 66542 23346667777777777664333 3666667777777777776 34555666667777777777666 34444
Q ss_pred hhcccCCCCEEEcc
Q 018826 264 EMGEILLLQNLDLS 277 (350)
Q Consensus 264 ~~~~~~~L~~L~l~ 277 (350)
.+..++.|+.++++
T Consensus 257 ~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 257 FFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHHhCCCCcEEecc
Confidence 45555555555554
No 61
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=5.4e-30 Score=237.67 Aligned_cols=309 Identities=21% Similarity=0.218 Sum_probs=217.6
Q ss_pred CCccee----cCCcccCCCCCcCEEEccCCcCCCCCCccc-CCCC----CCCEEEccCCcCCC----CcchhccCCCCCc
Q 018826 14 YTENTC----TIPKEIGSLRNLEVLDLVSNNLNGTIPKEI-GTLR----NLMGLHLSSNNLTG----ELPQEIENLKSLI 80 (350)
Q Consensus 14 ~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~----~L~~L~l~~~~i~~----~~~~~~~~l~~L~ 80 (350)
+|.++. .++..+..+++|++|++++|.+++..+..+ ..++ +|++|++++|.+.. .++..+..+++|+
T Consensus 37 ~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 116 (461)
T 1z7x_W 37 DCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ 116 (461)
T ss_dssp SSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCC
T ss_pred CCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCcee
Confidence 455543 355667777888888888887764322222 2233 68888888888774 3466777888888
Q ss_pred EEecccccccCCCCccc-----cCCCCCcEEEccCCcccccc----CccccCCCCCCEEEcccCccccccchhhh-----
Q 018826 81 RLFVRNNTLGGPIPSTL-----FRLTNLEVLYLGFNQFNGTI----PREIGHLKNLTYLFIKVNKLTGAIRSTLG----- 146 (350)
Q Consensus 81 ~L~l~~n~~~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~~~~~~~~~~~----- 146 (350)
+|++++|.+....+..+ ...++|++|++++|.+++.. +..+..+++|++|++++|.+.......+.
T Consensus 117 ~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 196 (461)
T 1z7x_W 117 ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKD 196 (461)
T ss_dssp EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHH
T ss_pred EEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhc
Confidence 88888887754322222 22457888888888777533 34556678888888888887654433333
Q ss_pred ccCCccEEecCCCccccC----ccccccCCCCCCEEEccCCcccccC-----CcccCCCCCCCEEECCCCcCccc----c
Q 018826 147 QLTSLLQLDLSSNQLHSS----IPLEIGNLSALEELDLSDNKIHGII-----PDELTKLSQLKNLNISSNLLSGQ----I 213 (350)
Q Consensus 147 ~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~-----~~~~~~~~~L~~L~l~~n~~~~~----~ 213 (350)
..++|+.|++++|.+.+. ++..+..+++|+.|++++|.+++.. +..+..+++|++|++++|.+++. +
T Consensus 197 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 276 (461)
T 1z7x_W 197 SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL 276 (461)
T ss_dssp SCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred CCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHH
Confidence 256889999988887753 4566677889999999999876532 22234578999999999988853 5
Q ss_pred chhhhCCCCCCEEEccCCcccccCCcccc-----CCCCCCEEECCCCcCccc----CchhhcccCCCCEEEccccccccc
Q 018826 214 PSAIGKLFNLKYLDLSKNKLGGSIPTEIG-----NCSELKNLTLNHNSLDGT----IRPEMGEILLLQNLDLSHNNLSGT 284 (350)
Q Consensus 214 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~-----~~~~L~~L~l~~n~i~~~----~~~~~~~~~~L~~L~l~~N~i~~~ 284 (350)
+..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++..+..+++|+.|++++|.+++.
T Consensus 277 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 356 (461)
T 1z7x_W 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356 (461)
T ss_dssp HHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred HHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence 66677789999999999998754333332 236899999999998865 345566778999999999999887
Q ss_pred cCCcccc--------ccc-CCCCCccee----cCCCCC---CCCCCcccCCCCC
Q 018826 285 ITKTLCP--------MHS-DMSFNRLEG----EIPSNL---RDNPPKSFAGNTG 322 (350)
Q Consensus 285 ~p~~~~~--------~~~-~l~~N~l~~----~ip~~~---~~~~~~~~~~n~~ 322 (350)
.+..++. ... ++++|.+++ .+|..+ ..+..+++.+|+.
T Consensus 357 ~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 357 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred cHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 7665543 111 889999886 666654 7788888988843
No 62
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=2.2e-25 Score=205.62 Aligned_cols=220 Identities=25% Similarity=0.316 Sum_probs=103.4
Q ss_pred CCcEEecccccccCCCCccccCCCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecC
Q 018826 78 SLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLS 157 (350)
Q Consensus 78 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 157 (350)
+|++|++++|.+.+ +| .+..+++|++|++++|.+++ .|.. .++|++|++++|.+.... .+..+++|+.|+++
T Consensus 132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYAD 203 (454)
T ss_dssp TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECC
T ss_pred CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcCc--cccCCCCCCEEECC
Confidence 44455555444443 22 24445555555555554443 2211 134455555555444321 34445555555555
Q ss_pred CCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccC
Q 018826 158 SNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSI 237 (350)
Q Consensus 158 ~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 237 (350)
+|.+.+ .|.. .++|+.|++++|.++ ..| .+..+++|+.|++++|.+++ +|. .+++|+.|++++|.+++ +
T Consensus 204 ~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l 272 (454)
T 1jl5_A 204 NNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-L 272 (454)
T ss_dssp SSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-C
T ss_pred CCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-c
Confidence 555442 2211 134555555555554 222 25555555555555555553 222 12445555555555442 2
Q ss_pred CccccCCCCCCEEECCCCcCccc--Cchhh-------------ccc-CCCCEEEccccccccccCCccccccc-CCCCCc
Q 018826 238 PTEIGNCSELKNLTLNHNSLDGT--IRPEM-------------GEI-LLLQNLDLSHNNLSGTITKTLCPMHS-DMSFNR 300 (350)
Q Consensus 238 ~~~~~~~~~L~~L~l~~n~i~~~--~~~~~-------------~~~-~~L~~L~l~~N~i~~~~p~~~~~~~~-~l~~N~ 300 (350)
|.. +++|+.|++++|++++. .+..+ ..+ ++|+.|++++|++++ +|..+..... ++++|+
T Consensus 273 ~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~~~~L~~L~L~~N~ 348 (454)
T 1jl5_A 273 PEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERLIASFNH 348 (454)
T ss_dssp CCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSC
T ss_pred Ccc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-ccccCCcCCEEECCCCc
Confidence 221 24444555555544431 11110 111 356666666666664 4444333333 667777
Q ss_pred ceecCCCCCCCCCCcccCCCC
Q 018826 301 LEGEIPSNLRDNPPKSFAGNT 321 (350)
Q Consensus 301 l~~~ip~~~~~~~~~~~~~n~ 321 (350)
++ .+|.....+..+++.+|+
T Consensus 349 l~-~lp~~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 349 LA-EVPELPQNLKQLHVEYNP 368 (454)
T ss_dssp CS-CCCCCCTTCCEEECCSSC
T ss_pred cc-cccchhhhccEEECCCCC
Confidence 76 466644667777777764
No 63
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=3.9e-26 Score=210.61 Aligned_cols=249 Identities=24% Similarity=0.270 Sum_probs=117.9
Q ss_pred cccccC-CCCcceecCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCC-------------CEEEccCCcCCCCcchh
Q 018826 7 QGQDIQ-PYTENTCTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNL-------------MGLHLSSNNLTGELPQE 72 (350)
Q Consensus 7 ~~~~~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L-------------~~L~l~~~~i~~~~~~~ 72 (350)
.++.+. .+|.+ |.+|..+.++++|++|++++|.+.+..|..+..+.+| ++|++++|.+++ +|.
T Consensus 12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~- 88 (454)
T 1jl5_A 12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE- 88 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS-
T ss_pred cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC-
Confidence 344433 33444 7777777777777777777777666666666655543 666666666553 222
Q ss_pred ccCCCCCcEEecccccccCCCCccc----------------cC-CCCCcEEEccCCccccccCccccCCCCCCEEEcccC
Q 018826 73 IENLKSLIRLFVRNNTLGGPIPSTL----------------FR-LTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVN 135 (350)
Q Consensus 73 ~~~l~~L~~L~l~~n~~~~~~~~~~----------------~~-l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 135 (350)
..++|++|++++|.+.+ +|..+ .. .++|++|++++|.+++ +| .+..+++|++|++++|
T Consensus 89 --~~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 89 --LPPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNN 163 (454)
T ss_dssp --CCTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSS
T ss_pred --CcCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCC
Confidence 12455555555555543 22211 00 1355555555555553 23 3555555555555555
Q ss_pred ccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccch
Q 018826 136 KLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPS 215 (350)
Q Consensus 136 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 215 (350)
.+.... . ..++|+.|++++|.+.+ .| .+..+++|+.|++++|.+++. +.. .++|+.|++++|.++ .+|
T Consensus 164 ~l~~lp-~---~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~~---~~~L~~L~l~~n~l~-~lp- 231 (454)
T 1jl5_A 164 SLKKLP-D---LPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-PDL---PLSLESIVAGNNILE-ELP- 231 (454)
T ss_dssp CCSCCC-C---CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CCC---CTTCCEEECCSSCCS-SCC-
T ss_pred cCcccC-C---CcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-CCC---cCcccEEECcCCcCC-ccc-
Confidence 554321 1 12355555555555543 23 345555555555555555432 111 135566666666555 334
Q ss_pred hhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEcccccccc
Q 018826 216 AIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSG 283 (350)
Q Consensus 216 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~ 283 (350)
.+..+++|++|++++|++++ +|.. +++|++|++++|++++ +|.. .++|+.|++++|++++
T Consensus 232 ~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 232 ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG 291 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE
T ss_pred ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc
Confidence 25556666666666666652 3321 2566666666666654 2221 2566666666666665
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1.1e-27 Score=210.75 Aligned_cols=246 Identities=22% Similarity=0.218 Sum_probs=196.1
Q ss_pred ccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccC-CCCcccc-------CCCCCcEEEccCCccccccCc
Q 018826 48 EIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGG-PIPSTLF-------RLTNLEVLYLGFNQFNGTIPR 119 (350)
Q Consensus 48 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~ 119 (350)
.+...++|+++++++|.+ .+|..+... |++|++++|.+.. ..+..+. .+++|++|++++|.+++..|.
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 345677899999999998 556655543 8999999998843 3444444 689999999999999988887
Q ss_pred cc--cCCCCCCEEEcccCccccccchhhhcc-----CCccEEecCCCccccCccccccCCCCCCEEEccCCccccc--CC
Q 018826 120 EI--GHLKNLTYLFIKVNKLTGAIRSTLGQL-----TSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGI--IP 190 (350)
Q Consensus 120 ~l--~~l~~L~~L~l~~n~~~~~~~~~~~~~-----~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~--~~ 190 (350)
.+ ..+++|++|++++|.+... +..+..+ ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+. .+
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 76 8899999999999999877 5666666 8999999999999877778999999999999999987653 22
Q ss_pred ccc--CCCCCCCEEECCCCcCcc---ccchhhhCCCCCCEEEccCCcccccCC-ccccCCCCCCEEECCCCcCcccCchh
Q 018826 191 DEL--TKLSQLKNLNISSNLLSG---QIPSAIGKLFNLKYLDLSKNKLGGSIP-TEIGNCSELKNLTLNHNSLDGTIRPE 264 (350)
Q Consensus 191 ~~~--~~~~~L~~L~l~~n~~~~---~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~ 264 (350)
..+ ..+++|++|++++|.+++ .....+..+++|++|++++|.+++..| ..+..+++|++|++++|+++ .+|..
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~ 271 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG 271 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSS
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhh
Confidence 233 788999999999999983 222445678999999999999997654 45666899999999999999 56665
Q ss_pred hcccCCCCEEEccccccccccCCccccccc----CCCCCccee
Q 018826 265 MGEILLLQNLDLSHNNLSGTITKTLCPMHS----DMSFNRLEG 303 (350)
Q Consensus 265 ~~~~~~L~~L~l~~N~i~~~~p~~~~~~~~----~l~~N~l~~ 303 (350)
+. ++|+.|++++|+|++. |. +..+.. ++++|.+++
T Consensus 272 ~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 272 LP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred cc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 55 8899999999999876 44 444433 777777764
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=1.3e-25 Score=194.09 Aligned_cols=209 Identities=23% Similarity=0.236 Sum_probs=130.7
Q ss_pred CCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcEEEccCCccccccCccccCCCCCCEEEc
Q 018826 53 RNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFI 132 (350)
Q Consensus 53 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 132 (350)
++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 34666666666665444445555666666666666555444445555555555555555555444444555555555555
Q ss_pred ccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCccccc-CCcccCCCCCCCEEECCCCcCcc
Q 018826 133 KVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGI-IPDELTKLSQLKNLNISSNLLSG 211 (350)
Q Consensus 133 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~ 211 (350)
++|. +.+..+..+..+++|+.|++++|.+++. .+..+..+++|+.|++++|.+++
T Consensus 108 ~~n~------------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 108 VETN------------------------LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp TTSC------------------------CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCCC------------------------ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence 5444 4433333455556666666666666543 35566677777777777777776
Q ss_pred ccchhhhCCCCCC----EEEccCCcccccCCccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEccccccccccC
Q 018826 212 QIPSAIGKLFNLK----YLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTIT 286 (350)
Q Consensus 212 ~~~~~~~~~~~L~----~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p 286 (350)
..+..+..+++|+ .|++++|.+++..+..+. ..+|+.|++++|++++..+..+..+++|+.|++++|++++..+
T Consensus 164 ~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp ECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 5555565555555 788888888755554444 3578888888888887666667778888888888888876543
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=2e-25 Score=192.87 Aligned_cols=218 Identities=24% Similarity=0.243 Sum_probs=158.2
Q ss_pred ecCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCcccc
Q 018826 19 CTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLF 98 (350)
Q Consensus 19 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 98 (350)
..+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+....+..|.++++|++|++++|.+.+..+..|.
T Consensus 20 ~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (276)
T 2z62_A 20 YKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97 (276)
T ss_dssp SSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred cccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc
Confidence 34666654 6799999999999988777899999999999999999977777899999999999999999988888899
Q ss_pred CCCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccc-cchhhhccCCccEEecCCCccccCccccccCCCCCCE
Q 018826 99 RLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGA-IRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEE 177 (350)
Q Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 177 (350)
.+++|++|++.+|.+.+..+..+..+++|++|++++|.+... .+..+..+++|+.|++++|.+.+..+..+..+..++
T Consensus 98 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~- 176 (276)
T 2z62_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP- 176 (276)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT-
T ss_pred CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc-
Confidence 999999999999999877666788888888888888877653 244555555666666655555433333332222222
Q ss_pred EEccCCcccccCCcccCCCCCCC-EEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCc
Q 018826 178 LDLSDNKIHGIIPDELTKLSQLK-NLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNS 256 (350)
Q Consensus 178 L~l~~n~~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~ 256 (350)
.+. +|++++|.+++..+..+. ..+|+.|++++|.+++..+..+..+++|+.|++++|+
T Consensus 177 --------------------~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 177 --------------------LLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp --------------------TCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred --------------------ccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 111 566666666644443333 3367777777777765555556667777777777777
Q ss_pred Cccc
Q 018826 257 LDGT 260 (350)
Q Consensus 257 i~~~ 260 (350)
+++.
T Consensus 236 ~~c~ 239 (276)
T 2z62_A 236 WDCS 239 (276)
T ss_dssp BCCC
T ss_pred cccc
Confidence 7643
No 67
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.93 E-value=3.5e-28 Score=225.44 Aligned_cols=316 Identities=21% Similarity=0.143 Sum_probs=228.2
Q ss_pred cccccc-CCCCcceecCCccc-CCCC----CcCEEEccCCcCCC----CCCcccCCCCCCCEEEccCCcCCCCcchhcc-
Q 018826 6 HQGQDI-QPYTENTCTIPKEI-GSLR----NLEVLDLVSNNLNG----TIPKEIGTLRNLMGLHLSSNNLTGELPQEIE- 74 (350)
Q Consensus 6 ~~~~~~-~~~~~~~~~~~~~~-~~l~----~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~- 74 (350)
+.++.+ +.+|.+....+..+ ..++ +|++|++++|.+++ ..+..+..+++|++|++++|.+.+..+..+.
T Consensus 56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 135 (461)
T 1z7x_W 56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE 135 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH
Confidence 455553 44566655433333 2344 79999999999874 3467788999999999999988754333332
Q ss_pred ----CCCCCcEEecccccccCCC----CccccCCCCCcEEEccCCccccccCcccc-----CCCCCCEEEcccCccccc-
Q 018826 75 ----NLKSLIRLFVRNNTLGGPI----PSTLFRLTNLEVLYLGFNQFNGTIPREIG-----HLKNLTYLFIKVNKLTGA- 140 (350)
Q Consensus 75 ----~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~~~~~- 140 (350)
..++|++|++++|.+.... +..+..+++|++|++++|.+.+.....+. ..++|++|++++|.+...
T Consensus 136 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 215 (461)
T 1z7x_W 136 GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN 215 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH
T ss_pred HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH
Confidence 3567999999999887543 44556679999999999988754333332 367999999999988864
Q ss_pred ---cchhhhccCCccEEecCCCccccCc-----cccccCCCCCCEEEccCCccccc----CCcccCCCCCCCEEECCCCc
Q 018826 141 ---IRSTLGQLTSLLQLDLSSNQLHSSI-----PLEIGNLSALEELDLSDNKIHGI----IPDELTKLSQLKNLNISSNL 208 (350)
Q Consensus 141 ---~~~~~~~~~~L~~L~l~~n~~~~~~-----~~~l~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~ 208 (350)
....+..+++|+.|++++|.+.+.. +.....+++|+.|++++|.+++. .+..+..+++|++|++++|.
T Consensus 216 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 216 CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 2455677899999999999876432 22333578999999999988764 34556678899999999998
Q ss_pred Cccccchhhh-----CCCCCCEEEccCCccccc----CCccccCCCCCCEEECCCCcCcccCchhhcc-----cCCCCEE
Q 018826 209 LSGQIPSAIG-----KLFNLKYLDLSKNKLGGS----IPTEIGNCSELKNLTLNHNSLDGTIRPEMGE-----ILLLQNL 274 (350)
Q Consensus 209 ~~~~~~~~~~-----~~~~L~~L~l~~n~i~~~----~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~-----~~~L~~L 274 (350)
+++..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|++++..+..+.. .++|+.|
T Consensus 296 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 375 (461)
T 1z7x_W 296 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL 375 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred CchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEE
Confidence 8754443333 236899999999998864 3455666799999999999988655444432 5789999
Q ss_pred Ecccccccc----ccCCccccccc----CCCCCcceec--------CCCCCCCCCCcccCCCC
Q 018826 275 DLSHNNLSG----TITKTLCPMHS----DMSFNRLEGE--------IPSNLRDNPPKSFAGNT 321 (350)
Q Consensus 275 ~l~~N~i~~----~~p~~~~~~~~----~l~~N~l~~~--------ip~~~~~~~~~~~~~n~ 321 (350)
++++|.+++ .+|..+..... ++++|++++. +|...+.+..+.+.++.
T Consensus 376 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 376 WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp ECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred ECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccc
Confidence 999999986 66666544443 8999988754 66655677777777764
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=4.4e-26 Score=212.18 Aligned_cols=226 Identities=24% Similarity=0.237 Sum_probs=188.7
Q ss_pred CCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcEEEccCCccccccCccccCCCCCCEE
Q 018826 51 TLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYL 130 (350)
Q Consensus 51 ~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 130 (350)
.+++|++|++++|.+.+..|..|..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ .++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence 45689999999999998888899999999999999999876554 8889999999999999885432 3899999
Q ss_pred EcccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCcccccCCcccC-CCCCCCEEECCCCcC
Q 018826 131 FIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELT-KLSQLKNLNISSNLL 209 (350)
Q Consensus 131 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~n~~ 209 (350)
++++|.+...... .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+. .+++|+.|++++|.+
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 9999999876543 468899999999999877788888899999999999999887777775 689999999999999
Q ss_pred ccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEccccccc-cccCCc
Q 018826 210 SGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLS-GTITKT 288 (350)
Q Consensus 210 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~-~~~p~~ 288 (350)
++. +. ...+++|+.|++++|.+++. |..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.+|..
T Consensus 182 ~~~-~~-~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 182 YDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp CEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred ccc-cc-cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 865 32 34688999999999999954 4458888999999999999995 5667888899999999999887 555544
Q ss_pred cc
Q 018826 289 LC 290 (350)
Q Consensus 289 ~~ 290 (350)
+.
T Consensus 258 ~~ 259 (487)
T 3oja_A 258 FS 259 (487)
T ss_dssp HT
T ss_pred HH
Confidence 43
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=2.3e-24 Score=185.60 Aligned_cols=203 Identities=28% Similarity=0.335 Sum_probs=117.0
Q ss_pred CCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcEEEccCCccccccCccccCCCCCCEEEcc
Q 018826 54 NLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIK 133 (350)
Q Consensus 54 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 133 (350)
..++++++++.++ .+|..+. +++++|++++|.+....+..|..+++|++|++++|.++...+..+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 3556666666655 2333222 456666666666554444455555666666665555554433344455555555555
Q ss_pred cCccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCcccc
Q 018826 134 VNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQI 213 (350)
Q Consensus 134 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 213 (350)
+|.+.... +..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus 94 ~n~l~~~~------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 149 (270)
T 2o6q_A 94 DNKLQALP------------------------IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP 149 (270)
T ss_dssp SSCCCCCC------------------------TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCcCCcCC------------------------HhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC
Confidence 55444433 334444555555555555555554555566666666666666666554
Q ss_pred chhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEcccccccc
Q 018826 214 PSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSG 283 (350)
Q Consensus 214 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~ 283 (350)
+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++..
T Consensus 150 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 150 KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 4556666666666666666665555556666677777777777665555556666677777777776653
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=3e-24 Score=184.84 Aligned_cols=204 Identities=28% Similarity=0.328 Sum_probs=149.3
Q ss_pred CCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcEEEc
Q 018826 29 RNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYL 108 (350)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 108 (350)
...+.++++++.++. .|..+. +++++|++++|.+....+..|.++++|++|++++|.+....+..|..+++|++|++
T Consensus 16 ~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 357899999999985 454443 68999999999999777778999999999999999998777777889999999999
Q ss_pred cCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCccccc
Q 018826 109 GFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGI 188 (350)
Q Consensus 109 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 188 (350)
++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++| .+++.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n------------------------~l~~~ 148 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN------------------------ELQSL 148 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS------------------------CCCCC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC------------------------cCCcc
Confidence 999999777777788888888888888776554444455555555555554 44443
Q ss_pred CCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcc
Q 018826 189 IPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDG 259 (350)
Q Consensus 189 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~ 259 (350)
.+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 149 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 33445555666666666666665555556666677777777777765544556667777777777777653
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=7.2e-24 Score=201.57 Aligned_cols=254 Identities=29% Similarity=0.286 Sum_probs=185.3
Q ss_pred CCCCcceecCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccC
Q 018826 12 QPYTENTCTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGG 91 (350)
Q Consensus 12 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~ 91 (350)
+.+|.++ .+|..+. ++|+.|++++|.++.. +. .+++|++|++++|.++. +|. .+++|++|++++|.+.+
T Consensus 47 ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~ 115 (622)
T 3g06_A 47 VGESGLT-TLPDCLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH 115 (622)
T ss_dssp CCSSCCS-CCCSCCC--TTCSEEEECSCCCSCC-CC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC
T ss_pred ecCCCcC-ccChhhC--CCCcEEEecCCCCCCC-CC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC
Confidence 3445554 7787776 7899999999998843 33 57899999999999884 444 67899999999998875
Q ss_pred CCCccccCCCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccC
Q 018826 92 PIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGN 171 (350)
Q Consensus 92 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~ 171 (350)
.. . .+++|+.|++++|.++.. +.. +++|++|++++|.+..... .+++|+.|++++|.+.. ++ ..
T Consensus 116 l~-~---~l~~L~~L~L~~N~l~~l-p~~---l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~-l~---~~ 179 (622)
T 3g06_A 116 LP-A---LPSGLCKLWIFGNQLTSL-PVL---PPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTS-LP---ML 179 (622)
T ss_dssp CC-C---CCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CC---CC
T ss_pred CC-C---CCCCcCEEECCCCCCCcC-CCC---CCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCC-Cc---cc
Confidence 43 3 568899999999988853 432 4889999999998875421 35678888888888764 44 34
Q ss_pred CCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEE
Q 018826 172 LSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLT 251 (350)
Q Consensus 172 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ 251 (350)
+++|+.|++++|.+++. +. .+++|+.|++++|.++. +|. .+++|+.|++++|.+++ +| ..+++|+.|+
T Consensus 180 ~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~ 247 (622)
T 3g06_A 180 PSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELM 247 (622)
T ss_dssp CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEE
T ss_pred CCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEE
Confidence 67888888888888753 22 24678888888888773 333 24678888888888874 44 3457788888
Q ss_pred CCCCcCcccCchhhcccCCCCEEEccccccccccCCccccccc----CCCCCcceecCCCCC
Q 018826 252 LNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTITKTLCPMHS----DMSFNRLEGEIPSNL 309 (350)
Q Consensus 252 l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p~~~~~~~~----~l~~N~l~~~ip~~~ 309 (350)
+++|+++. +|. .+++|+.|++++|+|+ .+|..+..+.. ++++|.+++.+|..+
T Consensus 248 Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 248 VSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred CCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHH
Confidence 88888874 333 4577888888888887 56666665544 788888877766654
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=1.2e-24 Score=189.11 Aligned_cols=203 Identities=28% Similarity=0.261 Sum_probs=171.3
Q ss_pred ccCCCCCcEEecccccccCCCCccccCCCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCcc
Q 018826 73 IENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLL 152 (350)
Q Consensus 73 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 152 (350)
+.+++++++++++++.++. +|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.+...... ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 5678899999999998874 444443 6899999999999988788899999999999999998865432 6788999
Q ss_pred EEecCCCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCc
Q 018826 153 QLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNK 232 (350)
Q Consensus 153 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 232 (350)
.|++++|.+. .+|..+..+++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 9999999887 667778888999999999999987777888899999999999999987777778888999999999999
Q ss_pred ccccCCccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEccccccc
Q 018826 233 LGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLS 282 (350)
Q Consensus 233 i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~ 282 (350)
+++..+..+..+++|+.|++++|+++ .+|..+...++|+.+++++|++.
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 98666667788899999999999998 56666777788999999999875
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=5.3e-25 Score=189.77 Aligned_cols=204 Identities=27% Similarity=0.319 Sum_probs=95.7
Q ss_pred CCCCcEEecccccccCCCCccccCCCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEe
Q 018826 76 LKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLD 155 (350)
Q Consensus 76 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 155 (350)
+++|+.|+++++.+... ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+....+..+..+++|+.|+
T Consensus 40 l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 34444444444443321 1233444444444444444321 2344444444444444444433333344444444444
Q ss_pred cCCCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccc
Q 018826 156 LSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGG 235 (350)
Q Consensus 156 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 235 (350)
+++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 44444443333334444555555555555544444444555555555555555554444444555555555555555554
Q ss_pred cCCccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEccccccccccCCccc
Q 018826 236 SIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTITKTLC 290 (350)
Q Consensus 236 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p~~~~ 290 (350)
..+..+..+++|+.|++++|.+.+. ++.|+.++++.|.++|.+|..+.
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 196 VPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTS
T ss_pred cCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccc
Confidence 4444445555555555555555432 23455555555555555554443
No 74
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.92 E-value=3.2e-26 Score=205.61 Aligned_cols=257 Identities=17% Similarity=0.204 Sum_probs=126.4
Q ss_pred CCCcceecCCcccCCCCCcCEEEccCCcCCCCCC----cccCCCC-CCCEEEccCCcCCCCcchhccCC-----CCCcEE
Q 018826 13 PYTENTCTIPKEIGSLRNLEVLDLVSNNLNGTIP----KEIGTLR-NLMGLHLSSNNLTGELPQEIENL-----KSLIRL 82 (350)
Q Consensus 13 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~i~~~~~~~~~~l-----~~L~~L 82 (350)
.+|.++|.+|..+...++|++|++++|.+++..+ +.+..++ +|++|++++|.+.+..+..+..+ ++|++|
T Consensus 6 s~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 85 (362)
T 3goz_A 6 TLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSL 85 (362)
T ss_dssp CCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred ccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEE
Confidence 3445555555555544555555555555554433 3444555 55555555555554444433332 455555
Q ss_pred ecccccccCCCCccccCCCCCcEEEccCCccccccCccccCC-CCCCEEEcccCccccccchhhh----c-cCCccEEec
Q 018826 83 FVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHL-KNLTYLFIKVNKLTGAIRSTLG----Q-LTSLLQLDL 156 (350)
Q Consensus 83 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~~~----~-~~~L~~L~l 156 (350)
++++|.+.+..+..+.. .+..+ ++|++|++++|.+.......+. . ..+|+.|++
T Consensus 86 ~Ls~n~l~~~~~~~l~~--------------------~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 145 (362)
T 3goz_A 86 NLSGNFLSYKSSDELVK--------------------TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNL 145 (362)
T ss_dssp ECCSSCGGGSCHHHHHH--------------------HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEEC
T ss_pred ECcCCcCChHHHHHHHH--------------------HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEc
Confidence 55555544333322111 12222 4444444444444433322221 1 134555555
Q ss_pred CCCccccCc----cccccCCC-CCCEEEccCCcccccCCcc----cCCC-CCCCEEECCCCcCccc----cchhhhC-CC
Q 018826 157 SSNQLHSSI----PLEIGNLS-ALEELDLSDNKIHGIIPDE----LTKL-SQLKNLNISSNLLSGQ----IPSAIGK-LF 221 (350)
Q Consensus 157 ~~n~~~~~~----~~~l~~~~-~L~~L~l~~n~~~~~~~~~----~~~~-~~L~~L~l~~n~~~~~----~~~~~~~-~~ 221 (350)
++|.+.+.. +..+...+ +|+.|++++|.+++..+.. +... ++|+.|++++|.+++. ++..+.. .+
T Consensus 146 s~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~ 225 (362)
T 3goz_A 146 RGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPN 225 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCT
T ss_pred cCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCC
Confidence 555544321 22223333 5666666666655443322 2233 3666666666666542 2333333 34
Q ss_pred CCCEEEccCCcccccCC----ccccCCCCCCEEECCCCcCcccCc-------hhhcccCCCCEEEccccccccccCCcc
Q 018826 222 NLKYLDLSKNKLGGSIP----TEIGNCSELKNLTLNHNSLDGTIR-------PEMGEILLLQNLDLSHNNLSGTITKTL 289 (350)
Q Consensus 222 ~L~~L~l~~n~i~~~~~----~~~~~~~~L~~L~l~~n~i~~~~~-------~~~~~~~~L~~L~l~~N~i~~~~p~~~ 289 (350)
+|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+ ..+..+++|+.||+++|++.+..+..+
T Consensus 226 ~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~ 304 (362)
T 3goz_A 226 HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI 304 (362)
T ss_dssp TCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHH
T ss_pred CceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHH
Confidence 67777777777664332 233455667777777776433222 234455667777777777766544433
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=2.5e-24 Score=185.56 Aligned_cols=227 Identities=26% Similarity=0.297 Sum_probs=192.9
Q ss_pred CCcEEecccccccCCCCccccCCCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecC
Q 018826 78 SLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLS 157 (350)
Q Consensus 78 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 157 (350)
.+..+.+..+.+... .....+++|+.|++.++.+... ..+..+++|++|++++|.+... ..+..+++|+.|+++
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence 445566666655433 2345689999999999998743 4588899999999999999865 478899999999999
Q ss_pred CCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccC
Q 018826 158 SNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSI 237 (350)
Q Consensus 158 ~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 237 (350)
+|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 99998777777899999999999999999887778899999999999999999877777899999999999999999777
Q ss_pred CccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEccccccccccCCccccccc-CCCCCcceecCCCCCCCCCC
Q 018826 238 PTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTITKTLCPMHS-DMSFNRLEGEIPSNLRDNPP 314 (350)
Q Consensus 238 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p~~~~~~~~-~l~~N~l~~~ip~~~~~~~~ 314 (350)
+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+..|. ... +++.|.++|.+|.++..+..
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~----l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG----IRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT----THHHHHHHHHTGGGBBCTTSCBCG
T ss_pred HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH----HHHHHHHHHhCCCcccCcccccCC
Confidence 77788999999999999999988877789999999999999999876552 222 67789999999998765543
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=9.7e-24 Score=183.34 Aligned_cols=204 Identities=26% Similarity=0.243 Sum_probs=180.5
Q ss_pred cCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcEEEccCCccccccCccccCCCCCC
Q 018826 49 IGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLT 128 (350)
Q Consensus 49 ~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 128 (350)
+.++++++.++++++.++ .+|..+. +++++|++++|.+.+..+..|..+++|++|++++|.+++..+ ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 567899999999999998 4554443 689999999999998888889999999999999999986543 37899999
Q ss_pred EEEcccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCc
Q 018826 129 YLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNL 208 (350)
Q Consensus 129 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 208 (350)
+|++++|.+... +..+..+++|+.|++++|++....+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+
T Consensus 81 ~L~Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCCcC-chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 999999999854 4567889999999999999987777889999999999999999998878888999999999999999
Q ss_pred CccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcc
Q 018826 209 LSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDG 259 (350)
Q Consensus 209 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~ 259 (350)
+++..+..+..+++|+.|++++|+++ .+|..+...++|+.|++++|.+..
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 99777777889999999999999999 677777788999999999999874
No 77
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=7.8e-23 Score=194.44 Aligned_cols=254 Identities=28% Similarity=0.295 Sum_probs=204.5
Q ss_pred CCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcEEEc
Q 018826 29 RNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYL 108 (350)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 108 (350)
.+++.|+++++.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.++.. |. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSL-PV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCC-CC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcC-CC---CCCCCCEEEC
Confidence 35899999999998 4555554 89999999999998 4454 578999999999998854 43 6799999999
Q ss_pred cCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCccccc
Q 018826 109 GFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGI 188 (350)
Q Consensus 109 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 188 (350)
++|.+++. +. .+++|+.|++++|.+..... .+++|+.|++++|.+.+ ++. .+++|+.|++++|.+++.
T Consensus 109 s~N~l~~l-~~---~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l 176 (622)
T 3g06_A 109 FSNPLTHL-PA---LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTSL 176 (622)
T ss_dssp CSCCCCCC-CC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC
T ss_pred cCCcCCCC-CC---CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCCC
Confidence 99999864 33 57899999999999886543 35899999999999874 343 357899999999999864
Q ss_pred CCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccCchhhccc
Q 018826 189 IPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEI 268 (350)
Q Consensus 189 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~ 268 (350)
+ ..+++|+.|++++|.+++ +|. .+++|+.|++++|.++ .+|.. +++|+.|++++|++++ +| ..+
T Consensus 177 -~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l 240 (622)
T 3g06_A 177 -P---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP---VLP 240 (622)
T ss_dssp -C---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC---CCC
T ss_pred -c---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC---CCC
Confidence 3 456899999999999985 343 3579999999999998 55543 4899999999999996 44 456
Q ss_pred CCCCEEEccccccccccCCccccccc-CCCCCcceecCCCCC---CCCCCcccCCCCCC
Q 018826 269 LLLQNLDLSHNNLSGTITKTLCPMHS-DMSFNRLEGEIPSNL---RDNPPKSFAGNTGL 323 (350)
Q Consensus 269 ~~L~~L~l~~N~i~~~~p~~~~~~~~-~l~~N~l~~~ip~~~---~~~~~~~~~~n~~~ 323 (350)
++|+.|++++|+|++ +|..+..... ++++|+|+ .+|..+ ..+..+++.+|+..
T Consensus 241 ~~L~~L~Ls~N~L~~-lp~~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 241 SELKELMVSGNRLTS-LPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp TTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCC
T ss_pred CcCcEEECCCCCCCc-CCcccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCC
Confidence 899999999999994 5554434443 99999999 888877 67778889999653
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=1e-24 Score=193.75 Aligned_cols=252 Identities=19% Similarity=0.233 Sum_probs=175.8
Q ss_pred CCCEEEccCCcCCCCcchhccCC--CCCcEEecccccccCCCCccccCCCCCcEEEccCCccccc-cCccccCCCCCCEE
Q 018826 54 NLMGLHLSSNNLTGELPQEIENL--KSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGT-IPREIGHLKNLTYL 130 (350)
Q Consensus 54 ~L~~L~l~~~~i~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L 130 (350)
.++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3677788777665 3445555 6788888888877765544 45678888888888877644 55567778888888
Q ss_pred EcccCccccccchhhhccCCccEEecCCC-ccccC-ccccccCCCCCCEEEccCC-ccccc-CCcccCCCC-CCCEEECC
Q 018826 131 FIKVNKLTGAIRSTLGQLTSLLQLDLSSN-QLHSS-IPLEIGNLSALEELDLSDN-KIHGI-IPDELTKLS-QLKNLNIS 205 (350)
Q Consensus 131 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~-~~~~l~~~~~L~~L~l~~n-~~~~~-~~~~~~~~~-~L~~L~l~ 205 (350)
++++|.+....+..+..+++|+.|++++| .+.+. .+..+..+++|+.|++++| .+++. .+..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 88888777666667777888888888887 45432 4555667788888888888 77643 344566777 88888888
Q ss_pred CC--cCc-cccchhhhCCCCCCEEEccCCc-ccccCCccccCCCCCCEEECCCCc-CcccCchhhcccCCCCEEEccccc
Q 018826 206 SN--LLS-GQIPSAIGKLFNLKYLDLSKNK-LGGSIPTEIGNCSELKNLTLNHNS-LDGTIRPEMGEILLLQNLDLSHNN 280 (350)
Q Consensus 206 ~n--~~~-~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~N~ 280 (350)
+| .++ +..+..+..+++|++|++++|. +++..+..+..+++|++|++++|. ++......+..+++|+.|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 88 444 3456667778888888888888 666666677788888888888885 33222235677888888888888
Q ss_pred cccccCCcccc-ccc-CCCCCcceecCCCCCC
Q 018826 281 LSGTITKTLCP-MHS-DMSFNRLEGEIPSNLR 310 (350)
Q Consensus 281 i~~~~p~~~~~-~~~-~l~~N~l~~~ip~~~~ 310 (350)
++...-..+.. +.. ++++|++++..|..+.
T Consensus 283 i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 283 VPDGTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp SCTTCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred cCHHHHHHHHhhCcceEEecccCccccCCccc
Confidence 54433333322 222 7778888887777653
No 79
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=9.5e-26 Score=204.35 Aligned_cols=239 Identities=20% Similarity=0.235 Sum_probs=137.0
Q ss_pred ccCCCCCCCEEEccCCcCCCCcc----hhccCCCCCcEEecccccc---cCCCCccc-------cCCCCCcEEEccCCcc
Q 018826 48 EIGTLRNLMGLHLSSNNLTGELP----QEIENLKSLIRLFVRNNTL---GGPIPSTL-------FRLTNLEVLYLGFNQF 113 (350)
Q Consensus 48 ~~~~l~~L~~L~l~~~~i~~~~~----~~~~~l~~L~~L~l~~n~~---~~~~~~~~-------~~l~~L~~L~l~~n~l 113 (350)
.+..+++|++|++++|.+....+ ..+..+++|++|++++|.+ .+..|..+ ..+++|++|++++|.+
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 34444555555555555543322 2244455555555555322 12222222 4556666666666665
Q ss_pred cc----ccCccccCCCCCCEEEcccCccccccchhh----hcc---------CCccEEecCCCcccc-Ccc---ccccCC
Q 018826 114 NG----TIPREIGHLKNLTYLFIKVNKLTGAIRSTL----GQL---------TSLLQLDLSSNQLHS-SIP---LEIGNL 172 (350)
Q Consensus 114 ~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~----~~~---------~~L~~L~l~~n~~~~-~~~---~~l~~~ 172 (350)
.. .++..+..+++|++|++++|.+.......+ ..+ ++|+.|++++|.+.. ..+ ..+..+
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence 54 233445556666666666666543222222 222 667777777766642 222 344556
Q ss_pred CCCCEEEccCCcccc-----cCCcccCCCCCCCEEECCCCcCc----cccchhhhCCCCCCEEEccCCccccc----CCc
Q 018826 173 SALEELDLSDNKIHG-----IIPDELTKLSQLKNLNISSNLLS----GQIPSAIGKLFNLKYLDLSKNKLGGS----IPT 239 (350)
Q Consensus 173 ~~L~~L~l~~n~~~~-----~~~~~~~~~~~L~~L~l~~n~~~----~~~~~~~~~~~~L~~L~l~~n~i~~~----~~~ 239 (350)
++|+.|++++|.++. ..+..+..+++|+.|++++|.++ ..++..+..+++|++|++++|.+++. ++.
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 266 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 266 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHH
Confidence 677777777776652 12225666777777777777774 34566677777777777777777653 334
Q ss_pred ccc--CCCCCCEEECCCCcCcc----cCchhh-cccCCCCEEEccccccccccC
Q 018826 240 EIG--NCSELKNLTLNHNSLDG----TIRPEM-GEILLLQNLDLSHNNLSGTIT 286 (350)
Q Consensus 240 ~~~--~~~~L~~L~l~~n~i~~----~~~~~~-~~~~~L~~L~l~~N~i~~~~p 286 (350)
.+. .+++|++|++++|.+++ .++..+ ..+++|+.|++++|++++..+
T Consensus 267 ~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 442 26777888888887775 255555 446778888888887776553
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=6.1e-25 Score=195.23 Aligned_cols=255 Identities=17% Similarity=0.221 Sum_probs=201.3
Q ss_pred CcCEEEccCCcCCCCCCcccCCC--CCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCC-CCccccCCCCCcEE
Q 018826 30 NLEVLDLVSNNLNGTIPKEIGTL--RNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGP-IPSTLFRLTNLEVL 106 (350)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L 106 (350)
.++.++++++.+. +..+..+ +.++.+++++|.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3788999888775 3455556 8899999999999876655 55789999999999987754 56678889999999
Q ss_pred EccCCccccccCccccCCCCCCEEEcccC-ccccc-cchhhhccCCccEEecCCC-ccccC-ccccccCCC-CCCEEEcc
Q 018826 107 YLGFNQFNGTIPREIGHLKNLTYLFIKVN-KLTGA-IRSTLGQLTSLLQLDLSSN-QLHSS-IPLEIGNLS-ALEELDLS 181 (350)
Q Consensus 107 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~-~~~~~~~~~~L~~L~l~~n-~~~~~-~~~~l~~~~-~L~~L~l~ 181 (350)
++++|.+++..+..+..+++|++|++++| .+... .+..+..+++|+.|++++| .+.+. .+..+..++ +|+.|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 99999988777778888999999999999 56643 4455788999999999999 77653 466677888 99999999
Q ss_pred CCc--cc-ccCCcccCCCCCCCEEECCCCc-CccccchhhhCCCCCCEEEccCCc-ccccCCccccCCCCCCEEECCCCc
Q 018826 182 DNK--IH-GIIPDELTKLSQLKNLNISSNL-LSGQIPSAIGKLFNLKYLDLSKNK-LGGSIPTEIGNCSELKNLTLNHNS 256 (350)
Q Consensus 182 ~n~--~~-~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~ 256 (350)
+|. ++ +..+..+..+++|+.|++++|. +++..+..+..+++|++|++++|. +.+.....+..+++|+.|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 994 44 2345566788999999999998 776777788999999999999995 44333346778999999999999
Q ss_pred CcccCchhhcccCCCCEEEccccccccccCCcccc
Q 018826 257 LDGTIRPEMGEILLLQNLDLSHNNLSGTITKTLCP 291 (350)
Q Consensus 257 i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p~~~~~ 291 (350)
++......+. ..++.|++++|++++..|..+..
T Consensus 283 i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 283 VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCSS
T ss_pred cCHHHHHHHH--hhCcceEEecccCccccCCcccc
Confidence 5543322222 34677779999999988876543
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=1.7e-23 Score=176.82 Aligned_cols=196 Identities=18% Similarity=0.199 Sum_probs=112.6
Q ss_pred CCCEEEccCCcCCCCcchhccCCCCCcEEeccccc-ccCCCCccccCCCCCcEEEccC-CccccccCccccCCCCCCEEE
Q 018826 54 NLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNT-LGGPIPSTLFRLTNLEVLYLGF-NQFNGTIPREIGHLKNLTYLF 131 (350)
Q Consensus 54 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~ 131 (350)
+|++|++++|+++...+..|.++++|++|++++|. +....+..|..+++|++|++++ |.+++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555554444445555555555555554 4444444455555555555554 455444334444445555555
Q ss_pred cccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCC---EEEccCC-cccccCCcccCCCCCCC-EEECCC
Q 018826 132 IKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALE---ELDLSDN-KIHGIIPDELTKLSQLK-NLNISS 206 (350)
Q Consensus 132 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~---~L~l~~n-~~~~~~~~~~~~~~~L~-~L~l~~ 206 (350)
+++|.+.. +|. +..+++|+ .|++++| .+++..+..+..+++|+ .|++++
T Consensus 112 l~~n~l~~-------------------------lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~ 165 (239)
T 2xwt_C 112 IFNTGLKM-------------------------FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165 (239)
T ss_dssp EEEECCCS-------------------------CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS
T ss_pred CCCCCCcc-------------------------ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC
Confidence 54444432 222 44445555 6666666 66655555666777777 777777
Q ss_pred CcCccccchhhhCCCCCCEEEccCCc-ccccCCccccCC-CCCCEEECCCCcCcccCchhhcccCCCCEEEcccc
Q 018826 207 NLLSGQIPSAIGKLFNLKYLDLSKNK-LGGSIPTEIGNC-SELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHN 279 (350)
Q Consensus 207 n~~~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~-~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N 279 (350)
|.++...+..+.. ++|+.|++++|+ +++..+..|..+ ++|+.|++++|++++..+. .+++|+.|+++++
T Consensus 166 n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 166 NGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 7776443344444 677777777774 765555667777 7777777777777744332 4567777777765
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=3.7e-25 Score=198.67 Aligned_cols=236 Identities=16% Similarity=0.147 Sum_probs=145.6
Q ss_pred ccc-cCCCCcceecCC----cccCCCC-CcCEEEccCCcCCCCCCcccCCC-----CCCCEEEccCCcCCCCcchh----
Q 018826 8 GQD-IQPYTENTCTIP----KEIGSLR-NLEVLDLVSNNLNGTIPKEIGTL-----RNLMGLHLSSNNLTGELPQE---- 72 (350)
Q Consensus 8 ~~~-~~~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~i~~~~~~~---- 72 (350)
++. -+.+|.+++..+ ..+.+++ +|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 103 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence 555 345667666655 7788898 89999999999987766666654 99999999999998766654
Q ss_pred ccCC-CCCcEEecccccccCCCCccc----cC-CCCCcEEEccCCccccccCc----cccCCC-CCCEEEcccCcccccc
Q 018826 73 IENL-KSLIRLFVRNNTLGGPIPSTL----FR-LTNLEVLYLGFNQFNGTIPR----EIGHLK-NLTYLFIKVNKLTGAI 141 (350)
Q Consensus 73 ~~~l-~~L~~L~l~~n~~~~~~~~~~----~~-l~~L~~L~l~~n~l~~~~~~----~l~~l~-~L~~L~l~~n~~~~~~ 141 (350)
+..+ ++|++|++++|.+.+..+..+ .. .++|++|++++|.+++.... .+..++ +|++|++++|.+....
T Consensus 104 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 183 (362)
T 3goz_A 104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN 183 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhh
Confidence 3444 789999999998876654433 23 25778888877777643222 223343 6666666666655443
Q ss_pred chhhhccCCccEEecCCCccccCccccccCC-CCCCEEEccCCccccc----CCcccCC-CCCCCEEECCCCcCccccc-
Q 018826 142 RSTLGQLTSLLQLDLSSNQLHSSIPLEIGNL-SALEELDLSDNKIHGI----IPDELTK-LSQLKNLNISSNLLSGQIP- 214 (350)
Q Consensus 142 ~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~-~~L~~L~l~~n~~~~~----~~~~~~~-~~~L~~L~l~~n~~~~~~~- 214 (350)
...+.. .+... ++|+.|++++|.+++. .+..+.. .++|++|++++|.+++..+
T Consensus 184 ~~~l~~--------------------~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 243 (362)
T 3goz_A 184 CAELAK--------------------FLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE 243 (362)
T ss_dssp HHHHHH--------------------HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHH
T ss_pred HHHHHH--------------------HHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHH
Confidence 322221 11222 2444444444444431 1122222 3466666666666654332
Q ss_pred ---hhhhCCCCCCEEEccCCccccc-------CCccccCCCCCCEEECCCCcCcccCch
Q 018826 215 ---SAIGKLFNLKYLDLSKNKLGGS-------IPTEIGNCSELKNLTLNHNSLDGTIRP 263 (350)
Q Consensus 215 ---~~~~~~~~L~~L~l~~n~i~~~-------~~~~~~~~~~L~~L~l~~n~i~~~~~~ 263 (350)
..+..+++|+.|++++|.+.+. ++..+..+++|+.|++++|++....+.
T Consensus 244 ~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 244 NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp HHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred HHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 2335566777777777764321 233456677788888888888755443
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=4.3e-23 Score=174.39 Aligned_cols=187 Identities=20% Similarity=0.210 Sum_probs=131.9
Q ss_pred eecCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCc-CCCCcchhccCCCCCcEEeccc-ccccCCCCc
Q 018826 18 TCTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNN-LTGELPQEIENLKSLIRLFVRN-NTLGGPIPS 95 (350)
Q Consensus 18 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~ 95 (350)
...+|. +. ++++.|++++|.+++..+..|..+++|++|++++|. ++...+..|.++++|++|++++ |.+....+.
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 445666 44 489999999999998888889999999999999997 8866677899999999999998 999887778
Q ss_pred cccCCCCCcEEEccCCccccccCccccCCCCCC---EEEcccC-ccccccchhhhccCCcc-EEecCCCccccCcccccc
Q 018826 96 TLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLT---YLFIKVN-KLTGAIRSTLGQLTSLL-QLDLSSNQLHSSIPLEIG 170 (350)
Q Consensus 96 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~---~L~l~~n-~~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~l~ 170 (350)
.|..+++|++|++++|.+++ +|. +..+++|+ +|++++| .+.......+.++++|+ .|++++|.+....+..+.
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~ 177 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN 177 (239)
T ss_dssp SEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTT
T ss_pred HhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcC
Confidence 89999999999999999986 443 77777777 7888777 66655555566666666 666666655422222222
Q ss_pred CCCCCCEEEccCCc-ccccCCcccCCC-CCCCEEECCCCcCc
Q 018826 171 NLSALEELDLSDNK-IHGIIPDELTKL-SQLKNLNISSNLLS 210 (350)
Q Consensus 171 ~~~~L~~L~l~~n~-~~~~~~~~~~~~-~~L~~L~l~~n~~~ 210 (350)
. ++|+.|++++|+ +++..+..+..+ ++|+.|++++|.++
T Consensus 178 ~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 178 G-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp T-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred C-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 2 444444444442 443333334444 44444444444443
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=2.3e-25 Score=201.76 Aligned_cols=263 Identities=21% Similarity=0.250 Sum_probs=203.3
Q ss_pred cceecCCcccCCCCCcCEEEccCCcCCCCC----CcccCCCCCCCEEEccCCcCC---CCcchhc-------cCCCCCcE
Q 018826 16 ENTCTIPKEIGSLRNLEVLDLVSNNLNGTI----PKEIGTLRNLMGLHLSSNNLT---GELPQEI-------ENLKSLIR 81 (350)
Q Consensus 16 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~i~---~~~~~~~-------~~l~~L~~ 81 (350)
.....++..+..+++|+.|++++|.+++.. ...+..+++|++|++++|.+. +..|..+ ..+++|++
T Consensus 19 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~ 98 (386)
T 2ca6_A 19 EDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT 98 (386)
T ss_dssp HHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred HHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccE
Confidence 334467778888999999999999988653 344778999999999997543 3444444 68899999
Q ss_pred EecccccccC----CCCccccCCCCCcEEEccCCccccccCcc----ccCC---------CCCCEEEcccCccccc-cc-
Q 018826 82 LFVRNNTLGG----PIPSTLFRLTNLEVLYLGFNQFNGTIPRE----IGHL---------KNLTYLFIKVNKLTGA-IR- 142 (350)
Q Consensus 82 L~l~~n~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----l~~l---------~~L~~L~l~~n~~~~~-~~- 142 (350)
|++++|.+.. .++..+..+++|++|++++|.+....+.. +..+ ++|++|++++|.+... .+
T Consensus 99 L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 178 (386)
T 2ca6_A 99 VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178 (386)
T ss_dssp EECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred EECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH
Confidence 9999999886 35567788999999999999987443333 3334 8999999999998733 22
Q ss_pred --hhhhccCCccEEecCCCcccc-----CccccccCCCCCCEEEccCCccc----ccCCcccCCCCCCCEEECCCCcCcc
Q 018826 143 --STLGQLTSLLQLDLSSNQLHS-----SIPLEIGNLSALEELDLSDNKIH----GIIPDELTKLSQLKNLNISSNLLSG 211 (350)
Q Consensus 143 --~~~~~~~~L~~L~l~~n~~~~-----~~~~~l~~~~~L~~L~l~~n~~~----~~~~~~~~~~~~L~~L~l~~n~~~~ 211 (350)
..+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.++ ...+..+..+++|+.|++++|.+++
T Consensus 179 l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence 356788999999999998863 23337788999999999999986 4456678889999999999999986
Q ss_pred c----cchhhhC--CCCCCEEEccCCcccc----cCCccc-cCCCCCCEEECCCCcCcccCc--hhh-cccCCCCEEEcc
Q 018826 212 Q----IPSAIGK--LFNLKYLDLSKNKLGG----SIPTEI-GNCSELKNLTLNHNSLDGTIR--PEM-GEILLLQNLDLS 277 (350)
Q Consensus 212 ~----~~~~~~~--~~~L~~L~l~~n~i~~----~~~~~~-~~~~~L~~L~l~~n~i~~~~~--~~~-~~~~~L~~L~l~ 277 (350)
. ++..+.. +++|+.|++++|.+++ .+|..+ ..+++|++|++++|++++..+ ..+ ..+++++..++.
T Consensus 259 ~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~ 338 (386)
T 2ca6_A 259 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELD 338 (386)
T ss_dssp HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEEC
T ss_pred hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhh
Confidence 5 4556644 8999999999999996 366666 558999999999999997663 222 234455545554
Q ss_pred c
Q 018826 278 H 278 (350)
Q Consensus 278 ~ 278 (350)
.
T Consensus 339 ~ 339 (386)
T 2ca6_A 339 E 339 (386)
T ss_dssp C
T ss_pred h
Confidence 3
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=1.5e-23 Score=184.13 Aligned_cols=226 Identities=19% Similarity=0.182 Sum_probs=151.3
Q ss_pred CCCCEEEccCCcCCCCc-ch--hccCCCCCcEEecccccccCCCCccc--cCCCCCcEEEccCCccccccC----ccccC
Q 018826 53 RNLMGLHLSSNNLTGEL-PQ--EIENLKSLIRLFVRNNTLGGPIPSTL--FRLTNLEVLYLGFNQFNGTIP----REIGH 123 (350)
Q Consensus 53 ~~L~~L~l~~~~i~~~~-~~--~~~~l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~----~~l~~ 123 (350)
..++.+.+.++.+.... .. .+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 34677777776654211 00 12234668888888888877777666 677888888888888775433 23446
Q ss_pred CCCCCEEEcccCccccccchhhhccCCccEEecCCCccccC--c--cccccCCCCCCEEEccCCcccccCC--c-ccCCC
Q 018826 124 LKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSS--I--PLEIGNLSALEELDLSDNKIHGIIP--D-ELTKL 196 (350)
Q Consensus 124 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~--~~~l~~~~~L~~L~l~~n~~~~~~~--~-~~~~~ 196 (350)
+++|++|++++|.+....+..+..+++|+.|++++|.+.+. . +..+..+++|+.|++++|.++.... . .+..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 77888888888887776666777778888888887775431 1 2223566778888888877753211 1 23566
Q ss_pred CCCCEEECCCCcCccccchhhhCC---CCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccCchhhcccCCCCE
Q 018826 197 SQLKNLNISSNLLSGQIPSAIGKL---FNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQN 273 (350)
Q Consensus 197 ~~L~~L~l~~n~~~~~~~~~~~~~---~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~ 273 (350)
++|++|++++|.+++..|..+..+ ++|++|++++|.++ .+|..+. ++|++|++++|++++. | .+..+++|+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~ 298 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-P-QPDELPEVDN 298 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-C-CTTSCCCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-c-hhhhCCCccE
Confidence 778888888888776656555554 57888888888887 5565553 6788888888888754 2 2466677888
Q ss_pred EEcccccccc
Q 018826 274 LDLSHNNLSG 283 (350)
Q Consensus 274 L~l~~N~i~~ 283 (350)
|++++|++++
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 8888887764
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=5.8e-22 Score=168.63 Aligned_cols=180 Identities=22% Similarity=0.282 Sum_probs=101.7
Q ss_pred CCcEEecccccccCCCCccccCCCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecC
Q 018826 78 SLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLS 157 (350)
Q Consensus 78 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 157 (350)
..++++++++.+. .+|..+. +.++.|++++|.+.+..+..+..+++|++|++++|.+....+..
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------------- 78 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV------------- 78 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT-------------
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhH-------------
Confidence 3456666666655 2333322 45666666666666555555555555555555555555444444
Q ss_pred CCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccC
Q 018826 158 SNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSI 237 (350)
Q Consensus 158 ~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 237 (350)
+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..
T Consensus 79 -----------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 147 (251)
T 3m19_A 79 -----------FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147 (251)
T ss_dssp -----------TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred -----------hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC
Confidence 444455555555555555444444555556666666666665444444555666666666666666444
Q ss_pred CccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEccccccccc
Q 018826 238 PTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGT 284 (350)
Q Consensus 238 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~ 284 (350)
+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++.
T Consensus 148 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 44556666666666666666655555566666666666666666544
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=2.7e-22 Score=175.86 Aligned_cols=193 Identities=25% Similarity=0.379 Sum_probs=97.5
Q ss_pred CCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcEEEccCCccccccCccccCCCCCCE
Q 018826 50 GTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTY 129 (350)
Q Consensus 50 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 129 (350)
..+++|++|+++++.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 345666777776666653 23 45566666666666666654332 56666666666666666543 24555666666
Q ss_pred EEcccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcC
Q 018826 130 LFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLL 209 (350)
Q Consensus 130 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 209 (350)
|++++|.+.... .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+
T Consensus 112 L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 112 LDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 666666555432 24455555555555555443221 3444444555554444443211 44444444444444444
Q ss_pred ccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCc
Q 018826 210 SGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLD 258 (350)
Q Consensus 210 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~ 258 (350)
++..+ +..+++|++|++++|.+++.. .+..+++|+.|++++|+++
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred CcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 42221 344444444444444444222 1334444444444444443
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=3.6e-22 Score=175.36 Aligned_cols=225 Identities=21% Similarity=0.223 Sum_probs=179.5
Q ss_pred CCcCEEEccCCcCCCCCCc---ccCCCCCCCEEEccCCcCCCCcchhc--cCCCCCcEEecccccccCCCC----ccccC
Q 018826 29 RNLEVLDLVSNNLNGTIPK---EIGTLRNLMGLHLSSNNLTGELPQEI--ENLKSLIRLFVRNNTLGGPIP----STLFR 99 (350)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~---~~~~l~~L~~L~l~~~~i~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~----~~~~~ 99 (350)
..++.+.+.+..++..... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3577888888776532111 12235679999999999998888877 889999999999999886544 34456
Q ss_pred CCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccc---c-chhhhccCCccEEecCCCccccCccc----cccC
Q 018826 100 LTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGA---I-RSTLGQLTSLLQLDLSSNQLHSSIPL----EIGN 171 (350)
Q Consensus 100 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~---~-~~~~~~~~~L~~L~l~~n~~~~~~~~----~l~~ 171 (350)
+++|++|++++|.+.+..+..+..+++|++|++++|.+... . ...+..+++|+.|++++|.+.. .+. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 89999999999999988888899999999999999987542 1 1223678999999999999863 232 2467
Q ss_pred CCCCCEEEccCCcccccCCcccCCC---CCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCC
Q 018826 172 LSALEELDLSDNKIHGIIPDELTKL---SQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELK 248 (350)
Q Consensus 172 ~~~L~~L~l~~n~~~~~~~~~~~~~---~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~ 248 (350)
+++|+.|++++|.+++..|..+..+ ++|++|++++|.++ .+|..+. ++|+.|++++|++++. |. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 7999999999999998767666665 69999999999999 5566553 7999999999999953 43 67789999
Q ss_pred EEECCCCcCcc
Q 018826 249 NLTLNHNSLDG 259 (350)
Q Consensus 249 ~L~l~~n~i~~ 259 (350)
.|++++|+++.
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 99999999974
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.7e-21 Score=165.79 Aligned_cols=181 Identities=26% Similarity=0.304 Sum_probs=133.5
Q ss_pred CCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcEEEccCCccccccCccccCCCCCCEEEc
Q 018826 53 RNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFI 132 (350)
Q Consensus 53 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 132 (350)
...++++++++.++ .+|..+. +++++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45788999999998 5555443 68999999999999888888999999999999999999888888899999999999
Q ss_pred ccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccc
Q 018826 133 KVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQ 212 (350)
Q Consensus 133 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 212 (350)
++|.+.......+..+++|+.|++++|.+ ++..+..+..+++|+.|++++|.+++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l------------------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 146 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQL------------------------KSLPSGVFDRLTKLKELRLNTNQLQSI 146 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCC------------------------CCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcC------------------------CCcChhHhccCCcccEEECcCCcCCcc
Confidence 88887765545555555555555555544 433344455566666666666666655
Q ss_pred cchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCccc
Q 018826 213 IPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGT 260 (350)
Q Consensus 213 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~ 260 (350)
.+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.+.
T Consensus 147 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 555666677777777777777755555666777777777777777644
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=1.1e-21 Score=171.90 Aligned_cols=198 Identities=27% Similarity=0.417 Sum_probs=170.5
Q ss_pred cCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCc
Q 018826 25 IGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLE 104 (350)
Q Consensus 25 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 104 (350)
+.++++|+.|+++++.++.. + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 34678999999999998854 3 58889999999999999986544 88999999999999998754 4688999999
Q ss_pred EEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCc
Q 018826 105 VLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNK 184 (350)
Q Consensus 105 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 184 (350)
+|++++|.+++. + .+..+++|++|++++|.+..... +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence 999999999864 3 48999999999999999987643 8899999999999999875433 8899999999999999
Q ss_pred ccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCc
Q 018826 185 IHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPT 239 (350)
Q Consensus 185 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~ 239 (350)
+++..+ +..+++|+.|++++|.+++.. .+..+++|+.|++++|.+++ .|.
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~-~~~ 234 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN-QPV 234 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC-CCE
T ss_pred cCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec-CCe
Confidence 986543 888999999999999998654 37899999999999999984 443
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=8.4e-21 Score=169.44 Aligned_cols=240 Identities=19% Similarity=0.180 Sum_probs=143.9
Q ss_pred CEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCC-CCccccCCCCCcE-EEcc
Q 018826 32 EVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGP-IPSTLFRLTNLEV-LYLG 109 (350)
Q Consensus 32 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~-L~l~ 109 (350)
++++.+++.++. +|..+ .+++++|++++|+++...+.+|.++++|++|++++|.+.+. .+.+|.+++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt~-iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCS-CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCc-cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 456666666663 33333 24567777777777654445667777777777777766443 3345666666654 3444
Q ss_pred CCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCC-CccccCccccccCCC-CCCEEEccCCcccc
Q 018826 110 FNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSS-NQLHSSIPLEIGNLS-ALEELDLSDNKIHG 187 (350)
Q Consensus 110 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~l~~~~-~L~~L~l~~n~~~~ 187 (350)
.|.+....+..|..+++|++|++++|.+.......+....++..+++.+ +.+....+..+.... .++.|++++|.++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 5666666666677777777777777776655555555555666666644 344433333444433 46677777777775
Q ss_pred cCCcccCCCCCCCEEECCC-CcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccCchhhc
Q 018826 188 IIPDELTKLSQLKNLNISS-NLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMG 266 (350)
Q Consensus 188 ~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~ 266 (350)
+.+..+ ...+|+++++.+ |.++.+.+.+|..+++|+.|++++|+++ .+|.. .+.+|+.|.+.++.--..+| .+.
T Consensus 169 i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP-~l~ 243 (350)
T 4ay9_X 169 IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLP-TLE 243 (350)
T ss_dssp ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCC-CTT
T ss_pred CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCC-Cch
Confidence 544433 345677777764 5555444456677777777777777777 33331 24566666665554332444 356
Q ss_pred ccCCCCEEEcccc
Q 018826 267 EILLLQNLDLSHN 279 (350)
Q Consensus 267 ~~~~L~~L~l~~N 279 (350)
.+++|+.+++.++
T Consensus 244 ~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 244 KLVALMEASLTYP 256 (350)
T ss_dssp TCCSCCEEECSCH
T ss_pred hCcChhhCcCCCC
Confidence 6777777777654
No 92
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=5.8e-21 Score=157.73 Aligned_cols=165 Identities=28% Similarity=0.316 Sum_probs=96.6
Q ss_pred CCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECC
Q 018826 126 NLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNIS 205 (350)
Q Consensus 126 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 205 (350)
+|++|++++|.+.......+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 44444444444443333334444555555555555543333444555666666666666655544455666667777777
Q ss_pred CCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEcccccccccc
Q 018826 206 SNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTI 285 (350)
Q Consensus 206 ~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~ 285 (350)
+|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+. ++.|+.|+++.|+++|.+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTB
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCcee
Confidence 7766655555566667777777777777655555566667777777777766532 356667777777777766
Q ss_pred CCcccccccCCC
Q 018826 286 TKTLCPMHSDMS 297 (350)
Q Consensus 286 p~~~~~~~~~l~ 297 (350)
|..+.....+..
T Consensus 182 p~~~~~l~~~~~ 193 (208)
T 2o6s_A 182 RNSAGSVAPDSA 193 (208)
T ss_dssp BCTTSSBCTTCS
T ss_pred eccCccccCCcc
Confidence 665554444333
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=3.6e-20 Score=165.31 Aligned_cols=230 Identities=22% Similarity=0.177 Sum_probs=182.3
Q ss_pred cCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCc-chhccCCCCCcE-EecccccccCCCCccc
Q 018826 20 TIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGEL-PQEIENLKSLIR-LFVRNNTLGGPIPSTL 97 (350)
Q Consensus 20 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~~~~~~l~~L~~-L~l~~n~~~~~~~~~~ 97 (350)
.+|..+. +++++|++++|.++.+.+++|.++++|++|+|++|++.+.+ +.+|.+++++++ +.+.+|.+....+..|
T Consensus 23 ~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f 100 (350)
T 4ay9_X 23 EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF 100 (350)
T ss_dssp SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSB
T ss_pred ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhh
Confidence 5677664 68999999999999777788999999999999999986554 457889988776 5666788988888899
Q ss_pred cCCCCCcEEEccCCccccccCccccCCCCCCEEEccc-CccccccchhhhccC-CccEEecCCCccccCccccccCCCCC
Q 018826 98 FRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKV-NKLTGAIRSTLGQLT-SLLQLDLSSNQLHSSIPLEIGNLSAL 175 (350)
Q Consensus 98 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~l~~~~~L 175 (350)
..+++|++|++++|.+....+..+....++..+++.+ +.+.......+..+. .++.|++++|++....+.. ....++
T Consensus 101 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~-f~~~~L 179 (350)
T 4ay9_X 101 QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA-FNGTQL 179 (350)
T ss_dssp CCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTS-STTEEE
T ss_pred hhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhh-ccccch
Confidence 9999999999999999977666677777888888865 567666666666664 6889999999998544444 455689
Q ss_pred CEEEccC-CcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCC
Q 018826 176 EELDLSD-NKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNH 254 (350)
Q Consensus 176 ~~L~l~~-n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~ 254 (350)
+.+++.+ |.++.+.+..|..+++|+.|++++|+++...+. .+.+|+.|.+.++.--..+| .+..+++|+.+++.+
T Consensus 180 ~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~---~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 180 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY---GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp EEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS---SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred hHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh---hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 9999985 667766667889999999999999999955443 35677888776655333666 478899999999987
Q ss_pred Cc
Q 018826 255 NS 256 (350)
Q Consensus 255 n~ 256 (350)
+.
T Consensus 256 ~~ 257 (350)
T 4ay9_X 256 PS 257 (350)
T ss_dssp HH
T ss_pred Cc
Confidence 54
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=3.1e-20 Score=153.30 Aligned_cols=162 Identities=28% Similarity=0.363 Sum_probs=99.4
Q ss_pred CCcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEcc
Q 018826 102 NLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLS 181 (350)
Q Consensus 102 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 181 (350)
++++|++++|.+++..+..+..+++|++|++++|.+.......+..+++|+.|++++|.+.+..+..+..+++|+.|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 44444444444443333334444555555555554444433444555555555555555554444445666667777777
Q ss_pred CCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccC
Q 018826 182 DNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTI 261 (350)
Q Consensus 182 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 261 (350)
+|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+ .+++|+.|++..|++++.+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTB
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCcee
Confidence 776665555556777777777777777776655567777788888888776652 3567778888888888777
Q ss_pred chhhcccCC
Q 018826 262 RPEMGEILL 270 (350)
Q Consensus 262 ~~~~~~~~~ 270 (350)
|..+..++.
T Consensus 182 p~~~~~l~~ 190 (208)
T 2o6s_A 182 RNSAGSVAP 190 (208)
T ss_dssp BCTTSSBCT
T ss_pred eccCccccC
Confidence 776665543
No 95
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.83 E-value=8.6e-22 Score=188.15 Aligned_cols=268 Identities=15% Similarity=0.078 Sum_probs=153.6
Q ss_pred cCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEc---------------------------cCCcCCCCcchh
Q 018826 20 TIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHL---------------------------SSNNLTGELPQE 72 (350)
Q Consensus 20 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l---------------------------~~~~i~~~~~~~ 72 (350)
.++..+.++++|++|+++++.+.+ .+..+..+++|++|++ +++.. ..+|..
T Consensus 211 ~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~ 288 (592)
T 3ogk_B 211 DLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPIL 288 (592)
T ss_dssp HHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGG
T ss_pred HHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHH
Confidence 445555667788888887776553 2333444455555554 44322 234445
Q ss_pred ccCCCCCcEEecccccccCCCC-ccccCCCCCcEEEccCCccc-cccCccccCCCCCCEEEccc-----------Ccccc
Q 018826 73 IENLKSLIRLFVRNNTLGGPIP-STLFRLTNLEVLYLGFNQFN-GTIPREIGHLKNLTYLFIKV-----------NKLTG 139 (350)
Q Consensus 73 ~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~-----------n~~~~ 139 (350)
+..+++|++|++++|.+..... ..+..+++|++|++. +.+. ...+.....+++|++|++++ +.+..
T Consensus 289 ~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~ 367 (592)
T 3ogk_B 289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ 367 (592)
T ss_dssp GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH
T ss_pred HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCH
Confidence 5566667777777666432221 224556677777666 2222 12222234566777777762 34433
Q ss_pred ccchh-hhccCCccEEecCCCccccCccccccC-CCCCCEEEcc----CCccccc-----CCcccCCCCCCCEEECCCCc
Q 018826 140 AIRST-LGQLTSLLQLDLSSNQLHSSIPLEIGN-LSALEELDLS----DNKIHGI-----IPDELTKLSQLKNLNISSNL 208 (350)
Q Consensus 140 ~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~l~~-~~~L~~L~l~----~n~~~~~-----~~~~~~~~~~L~~L~l~~n~ 208 (350)
..... ...+++|+.|++..+.+++.....+.. +++|+.|+++ .+.+++. .+..+..+++|++|++++|.
T Consensus 368 ~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~ 447 (592)
T 3ogk_B 368 RGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQ 447 (592)
T ss_dssp HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCG
T ss_pred HHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCC
Confidence 22222 344677777777666665544444443 6777777775 3444432 11224457778888886543
Q ss_pred --Cccccchhh-hCCCCCCEEEccCCccccc-CCccccCCCCCCEEECCCCcCcccC-chhhcccCCCCEEEcccccccc
Q 018826 209 --LSGQIPSAI-GKLFNLKYLDLSKNKLGGS-IPTEIGNCSELKNLTLNHNSLDGTI-RPEMGEILLLQNLDLSHNNLSG 283 (350)
Q Consensus 209 --~~~~~~~~~-~~~~~L~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~~L~~L~l~~N~i~~ 283 (350)
+++.....+ ..+++|+.|++++|.+++. .+..+..+++|+.|++++|.+++.. +.....+++|+.|++++|++++
T Consensus 448 ~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 448 GGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp GGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred CCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 443333333 3477888888888887752 3344466788888888888876432 2334567888888888888876
Q ss_pred ccCCccc
Q 018826 284 TITKTLC 290 (350)
Q Consensus 284 ~~p~~~~ 290 (350)
.....+.
T Consensus 528 ~~~~~l~ 534 (592)
T 3ogk_B 528 TGQDLMQ 534 (592)
T ss_dssp TCTTGGG
T ss_pred HHHHHHH
Confidence 6544443
No 96
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=9.3e-23 Score=194.83 Aligned_cols=113 Identities=12% Similarity=0.067 Sum_probs=51.5
Q ss_pred CCCCCEEEccCCcccccCCcccCC-CCCCCEEECC----CCcCccc-----cchhhhCCCCCCEEEccCCc--ccccCCc
Q 018826 172 LSALEELDLSDNKIHGIIPDELTK-LSQLKNLNIS----SNLLSGQ-----IPSAIGKLFNLKYLDLSKNK--LGGSIPT 239 (350)
Q Consensus 172 ~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~----~n~~~~~-----~~~~~~~~~~L~~L~l~~n~--i~~~~~~ 239 (350)
+++|+.|++..+.+++.....+.. +++|+.|++. .+.+++. .+..+..+++|++|+++.|. +++..+.
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~ 456 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence 344444444444443332222322 4455555553 3334321 22223445555555554322 3332222
Q ss_pred cc-cCCCCCCEEECCCCcCccc-CchhhcccCCCCEEEccccccccc
Q 018826 240 EI-GNCSELKNLTLNHNSLDGT-IRPEMGEILLLQNLDLSHNNLSGT 284 (350)
Q Consensus 240 ~~-~~~~~L~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~N~i~~~ 284 (350)
.+ ..+++|++|++++|++++. .+..+..+++|+.|++++|.+++.
T Consensus 457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 503 (592)
T 3ogk_B 457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER 503 (592)
T ss_dssp HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH
Confidence 22 2255666666666666532 222334556666666666666544
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=2.2e-19 Score=168.81 Aligned_cols=188 Identities=25% Similarity=0.318 Sum_probs=121.8
Q ss_pred CCcEEecccccccCCCCccccCCCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecC
Q 018826 78 SLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLS 157 (350)
Q Consensus 78 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 157 (350)
+|+.|++++|.+.+ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|.+..+. . +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~ip-~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTLP-E-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCC-C-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCcc-h-hhc--CCCEEECC
Confidence 56666666665554 33322 255666666666655 233 33466666666666665532 2 322 67777777
Q ss_pred CCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccC
Q 018826 158 SNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSI 237 (350)
Q Consensus 158 ~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 237 (350)
+|.+.+ +|. .+++|+.|++++|.++++ |. .+++|+.|++++|.+++ +|. +. ++|+.|++++|.|+ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTML-PE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCcC-CC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 776654 333 456777777777777753 32 45678888888888875 444 44 78888888888887 55
Q ss_pred CccccCCCCC-------CEEECCCCcCcccCchhhcccCCCCEEEccccccccccCCcccccc
Q 018826 238 PTEIGNCSEL-------KNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTITKTLCPMH 293 (350)
Q Consensus 238 ~~~~~~~~~L-------~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p~~~~~~~ 293 (350)
|. +.. +| +.|++++|+|+ .+|..+..+++|+.|++++|++++.+|..+....
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 55 443 66 88888888888 4666666788888888888888888887776653
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=5e-19 Score=153.73 Aligned_cols=171 Identities=26% Similarity=0.445 Sum_probs=94.5
Q ss_pred CCCCCcEEecccccccCCCCccccCCCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEE
Q 018826 75 NLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQL 154 (350)
Q Consensus 75 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 154 (350)
.+++|++|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+...
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-------------- 105 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL-------------- 105 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--------------
T ss_pred hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--------------
Confidence 344555555555554432 1 24445555555555555543322 44445555555544444332
Q ss_pred ecCCCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCccc
Q 018826 155 DLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLG 234 (350)
Q Consensus 155 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~ 234 (350)
..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.++
T Consensus 106 ------------~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 106 ------------SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp ------------GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred ------------hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence 1244555555566655555533 3455566666666666666643 34566666777777776666
Q ss_pred ccCCccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEcccccccc
Q 018826 235 GSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSG 283 (350)
Q Consensus 235 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~ 283 (350)
+..+ +..+++|+.|++++|++++. + .+..+++|+.|++++|+++.
T Consensus 170 ~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 170 DIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred cchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 4332 56666777777777766643 2 35666677777777776664
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=2.7e-19 Score=155.41 Aligned_cols=186 Identities=27% Similarity=0.377 Sum_probs=136.3
Q ss_pred EEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcEEEccCCc
Q 018826 33 VLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQ 112 (350)
Q Consensus 33 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 112 (350)
.+.+....+++. ..+..+++|++|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.
T Consensus 28 ~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 28 KDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK 101 (291)
T ss_dssp HHHTTCSCTTSE--ECHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred HHHhcCCCcccc--cchhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCc
Confidence 334555555433 2345789999999999999854 3 47889999999999999986544 8899999999999999
Q ss_pred cccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCcccccCCcc
Q 018826 113 FNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDE 192 (350)
Q Consensus 113 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~ 192 (350)
+.+. ..+..+++|++|++++|.+... ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+++..+
T Consensus 102 l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-- 173 (291)
T 1h6t_A 102 VKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-- 173 (291)
T ss_dssp CCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred CCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--
Confidence 9863 3588899999999999988865 4567778888888888877643 456666677777777776665433
Q ss_pred cCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCccc
Q 018826 193 LTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLG 234 (350)
Q Consensus 193 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~ 234 (350)
+..+++|+.|++++|.+++. + .+..+++|+.|++++|.++
T Consensus 174 l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 174 LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 66666666666666666632 2 3566666666666666665
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=6.9e-19 Score=167.11 Aligned_cols=191 Identities=26% Similarity=0.374 Sum_probs=143.2
Q ss_pred CcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcEEEcc
Q 018826 30 NLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLG 109 (350)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 109 (350)
.+..+.+..+.+.+.. .+..+++|+.|++++|.+... + .+..+++|++|+|++|.+.+..+ +..+++|+.|+++
T Consensus 22 ~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHHhccCCCccccc--chhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 3444455555555432 245678888899988888743 3 47788899999999988876543 7788899999999
Q ss_pred CCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCcccccC
Q 018826 110 FNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGII 189 (350)
Q Consensus 110 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 189 (350)
+|.+.+. ..+..+++|++|++++|.+... ..+..+++|+.|+|++|.+.+. ..+..+++|+.|++++|.+.+..
T Consensus 96 ~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 96 ENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp SSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred CCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence 8888753 3678888888888888888764 4577788888888888887654 56777888888888888887654
Q ss_pred CcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCccccc
Q 018826 190 PDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGS 236 (350)
Q Consensus 190 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 236 (350)
+ +..+++|+.|+|++|.+++. ..+..+++|+.|++++|.+.+.
T Consensus 170 ~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 170 P--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp G--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred h--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 4 77788888888888888753 3577788888888888887743
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=7.5e-19 Score=157.43 Aligned_cols=176 Identities=30% Similarity=0.306 Sum_probs=95.4
Q ss_pred cEEecccccccCCCCccccCCCCCcEEEccCCccccccCcccc-CCCCCCEEEcccCccccccchhhhccCCccEEecCC
Q 018826 80 IRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIG-HLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSS 158 (350)
Q Consensus 80 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 158 (350)
+.++++++.+.. +|..+. +.++.|++++|.+++..+..+. .+++|++|++++|.+....+..|..+++|+.|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 466777766653 343332 3567777777777765555555 666777777766666655555566666666666666
Q ss_pred CccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhh---hCCCCCCEEEccCCcccc
Q 018826 159 NQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAI---GKLFNLKYLDLSKNKLGG 235 (350)
Q Consensus 159 n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~---~~~~~L~~L~l~~n~i~~ 235 (350)
|.+....+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 66554444445555555555555555555445555555555555555555553333333 334555555555555543
Q ss_pred cCCccccCCCC--CCEEECCCCcCc
Q 018826 236 SIPTEIGNCSE--LKNLTLNHNSLD 258 (350)
Q Consensus 236 ~~~~~~~~~~~--L~~L~l~~n~i~ 258 (350)
..+..+..++. ++.|++++|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 32233333333 244555555443
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=1.6e-18 Score=144.27 Aligned_cols=133 Identities=23% Similarity=0.344 Sum_probs=81.6
Q ss_pred CccEEecCCCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEcc
Q 018826 150 SLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLS 229 (350)
Q Consensus 150 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 229 (350)
+++.|++++|.+....+..+..+++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+.|+++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 45555555555544444455555666666666666655555566666666666666666665544555666666666666
Q ss_pred CCcccccCCccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEccccccc
Q 018826 230 KNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLS 282 (350)
Q Consensus 230 ~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~ 282 (350)
+|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|++.
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 66666555566666666666666666666555555666666666666666664
No 103
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.80 E-value=2.2e-19 Score=158.82 Aligned_cols=239 Identities=11% Similarity=0.077 Sum_probs=151.7
Q ss_pred CCCcCEEEccCCcCC--CCCCcccCCCCCCCEEEccCCcCCCCcchhccC--------CCCCcEEecccccccCCCCccc
Q 018826 28 LRNLEVLDLVSNNLN--GTIPKEIGTLRNLMGLHLSSNNLTGELPQEIEN--------LKSLIRLFVRNNTLGGPIPSTL 97 (350)
Q Consensus 28 l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~--------l~~L~~L~l~~n~~~~~~~~~~ 97 (350)
+++|+.|+|++|.+. ...... ++.+..+.+..+.+. +.+|.+ +++|+++.+.+ .+..+...+|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~~I~---~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMANFVP---AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTTEEC---TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred hccCeEEecCcceeEEecCcccc---ccccccccccccccC---HHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence 788999999999887 222222 222444555554332 345566 77788887777 6666666777
Q ss_pred cCCCCCcEEEccCCccccccCccccCCCCCCEEEcccCc----cccccchhhhccCCcc-EEec----------------
Q 018826 98 FRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNK----LTGAIRSTLGQLTSLL-QLDL---------------- 156 (350)
Q Consensus 98 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~----~~~~~~~~~~~~~~L~-~L~l---------------- 156 (350)
.++++|+.+++..|.+..+.+.+|..+.++..+...... .......+|..+..|+ .+.+
T Consensus 121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~ 200 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQ 200 (329)
T ss_dssp TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCC
T ss_pred hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccC
Confidence 777788888887777766666677777666666554421 1112223344444444 2322
Q ss_pred ---------CCCccccCccccc-cCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCC-E
Q 018826 157 ---------SSNQLHSSIPLEI-GNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLK-Y 225 (350)
Q Consensus 157 ---------~~n~~~~~~~~~l-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~-~ 225 (350)
.++-.. .....+ ..+++|+.+++++|.++.+...+|.++++|++|++.+| +..+...+|.++++|+ .
T Consensus 201 ~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~ 278 (329)
T 3sb4_A 201 PRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGT 278 (329)
T ss_dssp GGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred ccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEE
Confidence 221100 000111 12577788888877777777777777888888888776 6656667777787887 7
Q ss_pred EEccCCcccccCCccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEc
Q 018826 226 LDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDL 276 (350)
Q Consensus 226 L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l 276 (350)
+++.+ .++.+.+.+|.+|++|+.+++++|+++...+.+|.++++|+.+..
T Consensus 279 l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 279 LELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 88877 566566677777888888888778777666677777777777653
No 104
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.80 E-value=8.1e-18 Score=152.20 Aligned_cols=242 Identities=10% Similarity=0.099 Sum_probs=107.7
Q ss_pred CCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcEEEc
Q 018826 29 RNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYL 108 (350)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 108 (350)
..++.+.+.+. ++.+...+|.++ +|+.+.+..+ +......+|.++ +|+.+.+.. .+..+...+|.++++|+.+++
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 34444444322 222333444443 4555555443 333333444442 355555543 333344444555555555555
Q ss_pred cCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCccccc
Q 018826 109 GFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGI 188 (350)
Q Consensus 109 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 188 (350)
..|.++.+...+|. +.+|+.+.+..+ +..+...+|.++++|+.+.+..+ +......+|.. .+|+.+.+. +.++.+
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I 262 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNI 262 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEE
T ss_pred CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEE
Confidence 55444433333333 345555555422 44444444555555555555432 22233333433 345555552 223334
Q ss_pred CCcccCCCCCCCEEECCCCcCc-----cccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccCch
Q 018826 189 IPDELTKLSQLKNLNISSNLLS-----GQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRP 263 (350)
Q Consensus 189 ~~~~~~~~~~L~~L~l~~n~~~-----~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~ 263 (350)
...+|..+++|+.+.+.++.+. .+...+|..+++|+.+++.+ .++.....+|.+|++|+.+.+..+ ++.....
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~ 340 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFS 340 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTT
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHH
Confidence 4444555555555555444332 23334455555555555552 233344444555555555555333 3333444
Q ss_pred hhcccCCCCEEEcccccccc
Q 018826 264 EMGEILLLQNLDLSHNNLSG 283 (350)
Q Consensus 264 ~~~~~~~L~~L~l~~N~i~~ 283 (350)
+|..+ +|+.+++.+|.+..
T Consensus 341 aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 341 AFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp SSSSS-CCCEEEECCSSCCB
T ss_pred hCCCC-CCCEEEEcCCCCcc
Confidence 44444 55555555554443
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=2.1e-18 Score=143.55 Aligned_cols=136 Identities=21% Similarity=0.204 Sum_probs=96.4
Q ss_pred ccEEecCCCccccCcc-ccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEcc
Q 018826 151 LLQLDLSSNQLHSSIP-LEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLS 229 (350)
Q Consensus 151 L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 229 (350)
++.|++++|.+.+..+ ..+..+++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|++|+++
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 4555555555554322 345566677777777777766666667777777777777777776666667777788888888
Q ss_pred CCcccccCCccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEccccccccccC
Q 018826 230 KNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTIT 286 (350)
Q Consensus 230 ~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p 286 (350)
+|.+++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|.+....+
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 888776667777777788888888888877667777777788888888887765433
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=2.1e-18 Score=162.24 Aligned_cols=188 Identities=25% Similarity=0.359 Sum_probs=132.2
Q ss_pred CCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcEEEccCCccccccCccccCCCCCCEEEcc
Q 018826 54 NLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIK 133 (350)
Q Consensus 54 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 133 (350)
+|+.|++++|.+++ +|..+ .++|++|++++|.+. .+| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 67777777777764 44433 256777777777776 333 345777777777777775 443 433 77777777
Q ss_pred cCccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCcccc
Q 018826 134 VNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQI 213 (350)
Q Consensus 134 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 213 (350)
+|.+..+.. .+++|+.|++++|.+.+ +|. .+++|+.|++++|.+++ .|. +. ++|+.|++++|.++ .+
T Consensus 129 ~N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTMLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCCCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 777765432 56778888888887764 443 45788888888888876 444 54 78888888888887 44
Q ss_pred chhhhCCCCC-------CEEEccCCcccccCCccccCCCCCCEEECCCCcCcccCchhhcccC
Q 018826 214 PSAIGKLFNL-------KYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEIL 269 (350)
Q Consensus 214 ~~~~~~~~~L-------~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~ 269 (350)
|. +.. +| +.|++++|.|+ .+|..+..+++|+.|++++|++++.+|..+..++
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 54 433 66 99999999998 6777777799999999999999988887776543
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=9.1e-19 Score=166.29 Aligned_cols=190 Identities=27% Similarity=0.398 Sum_probs=119.9
Q ss_pred CCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcEEEccCCccccccCccccCCCCCCEEEccc
Q 018826 55 LMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKV 134 (350)
Q Consensus 55 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 134 (350)
+..+.+..+.+.+..+ +..+++|+.|++++|.+... + .+..+++|+.|++++|.+.+..+ +..+++|+.|+|++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 4444555555554332 34567777777777777643 2 46677777777777777775433 66777777777777
Q ss_pred CccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccc
Q 018826 135 NKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIP 214 (350)
Q Consensus 135 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 214 (350)
|.+... ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+++. ..+..+++|+.|+|++|.+.+..|
T Consensus 97 N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 97 NKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp SCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred CCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 777653 2566667777777777766532 3455666677777766666644 446666666666666666664433
Q ss_pred hhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCccc
Q 018826 215 SAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGT 260 (350)
Q Consensus 215 ~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~ 260 (350)
+..+++|+.|+|++|.+++. ..+..+++|+.|++++|++.+.
T Consensus 171 --l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp --GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred --hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 56666666666666666632 2455666666666666666543
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=2.1e-18 Score=141.00 Aligned_cols=154 Identities=21% Similarity=0.265 Sum_probs=112.4
Q ss_pred cCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCE
Q 018826 122 GHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKN 201 (350)
Q Consensus 122 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 201 (350)
..+++|++|++++|.+.... .+..+++|+.|++++|.+. ....+..+++|+.|++++|.+++..+..+..+++|+.
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 33455566666666555332 3555666666666666543 2235667788888888888887766777888889999
Q ss_pred EECCCCcCccccchhhhCCCCCCEEEccCCc-ccccCCccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEccccc
Q 018826 202 LNISSNLLSGQIPSAIGKLFNLKYLDLSKNK-LGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNN 280 (350)
Q Consensus 202 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~ 280 (350)
|++++|.+++..+..+..+++|++|++++|. ++ ..+ .+..+++|+.|++++|++++.. .+..+++|+.|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcc
Confidence 9999998887777888889999999999998 66 444 5778899999999999998543 67788999999999998
Q ss_pred ccc
Q 018826 281 LSG 283 (350)
Q Consensus 281 i~~ 283 (350)
|.+
T Consensus 193 i~~ 195 (197)
T 4ezg_A 193 IGG 195 (197)
T ss_dssp ---
T ss_pred cCC
Confidence 864
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=3.5e-18 Score=142.14 Aligned_cols=135 Identities=23% Similarity=0.260 Sum_probs=90.9
Q ss_pred CCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEC
Q 018826 125 KNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNI 204 (350)
Q Consensus 125 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 204 (350)
+++++|++++|.+.......+..+++|+.|++++|.+....+..+..+++|+.|++++|.++...+..+..+++|+.|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 34455555555544444444555555555555555555444556666666666777766666555555677777888888
Q ss_pred CCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcc
Q 018826 205 SSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDG 259 (350)
Q Consensus 205 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~ 259 (350)
++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 8887777777777788888888888888886666667778888888888888764
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=1.6e-18 Score=155.31 Aligned_cols=176 Identities=26% Similarity=0.274 Sum_probs=110.1
Q ss_pred CEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhcc-CCCCCcEEecccccccCCCCccccCCCCCcEEEccC
Q 018826 32 EVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIE-NLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGF 110 (350)
Q Consensus 32 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 110 (350)
+.++++++.++. +|..+ .+.++.|++++|.++...+..|. ++++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 467777777763 34333 24467777777777765555565 677777777777777766666677777777777777
Q ss_pred CccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccc---cCCCCCCEEEccCCcccc
Q 018826 111 NQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEI---GNLSALEELDLSDNKIHG 187 (350)
Q Consensus 111 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l---~~~~~L~~L~l~~n~~~~ 187 (350)
|.++...+..|..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+ ..+++|+.|++++|.+++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 77776655566777777777777777766655666666677777776666654333333 345566666666666554
Q ss_pred cCCcccCCCCC--CCEEECCCCcCc
Q 018826 188 IIPDELTKLSQ--LKNLNISSNLLS 210 (350)
Q Consensus 188 ~~~~~~~~~~~--L~~L~l~~n~~~ 210 (350)
..+..+..++. ++.|++.+|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 43344444443 255566655543
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=6e-18 Score=141.64 Aligned_cols=135 Identities=26% Similarity=0.293 Sum_probs=86.9
Q ss_pred CCccEEecCCCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEc
Q 018826 149 TSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDL 228 (350)
Q Consensus 149 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 228 (350)
++|+.|++++|.+.+..+..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+++..+..+..+++|+.|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 45556666666555555555566666666666666665554455566666777777777666555555666677777777
Q ss_pred cCCcccccCCccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEccccccccc
Q 018826 229 SKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGT 284 (350)
Q Consensus 229 ~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~ 284 (350)
++|.++ .+|..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+...
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 777776 5555666667777777777777655555566667777777777766643
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=5.8e-18 Score=140.82 Aligned_cols=134 Identities=19% Similarity=0.240 Sum_probs=90.0
Q ss_pred CCEEEcccCcccccc-chhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECC
Q 018826 127 LTYLFIKVNKLTGAI-RSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNIS 205 (350)
Q Consensus 127 L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 205 (350)
+++|++++|.+.... ...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|+++
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 344444444444332 1234555556666666666554445556666677777777777766666667777777777777
Q ss_pred CCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCccc
Q 018826 206 SNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGT 260 (350)
Q Consensus 206 ~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~ 260 (350)
+|.+++..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+.
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 7777766677777778888888888888766677777788888888888887644
No 113
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.77 E-value=8.4e-18 Score=136.80 Aligned_cols=171 Identities=23% Similarity=0.281 Sum_probs=132.7
Q ss_pred cEEecCCCccccCccccccCCCCCCEEEccCCcccccCCc-ccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccC
Q 018826 152 LQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPD-ELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSK 230 (350)
Q Consensus 152 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 230 (350)
+.++++++.+. .+|..+. .+++.|++++|.+++..+. .+..+++|++|++++|.+++..|..|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67788888775 4555443 3889999999988876654 478899999999999999988888899999999999999
Q ss_pred CcccccCCccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEccccccccccCCccccc-cc--CCCCCcceecCCC
Q 018826 231 NKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTITKTLCPM-HS--DMSFNRLEGEIPS 307 (350)
Q Consensus 231 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p~~~~~~-~~--~l~~N~l~~~ip~ 307 (350)
|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+..+..+... .. .+..+......|.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~ 167 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSST
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCCh
Confidence 99998777788889999999999999998888888899999999999999987665332211 11 4444555556677
Q ss_pred CCCCCCCcccCCCCCCcc
Q 018826 308 NLRDNPPKSFAGNTGLCG 325 (350)
Q Consensus 308 ~~~~~~~~~~~~n~~~~~ 325 (350)
.+......++..+...|.
T Consensus 168 ~l~~~~l~~l~~~~~~C~ 185 (192)
T 1w8a_A 168 KVRDVQIKDLPHSEFKCS 185 (192)
T ss_dssp TTTTSBGGGSCTTTCCCC
T ss_pred HHcCCChhhCcHhhcCcC
Confidence 666666666666665664
No 114
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.76 E-value=1.8e-19 Score=159.36 Aligned_cols=255 Identities=13% Similarity=0.053 Sum_probs=177.3
Q ss_pred CCCcCEEEccCCcCCCCCCcccCC-CCCCCEEEccCCcCC--CCcchhccCCCCCcEEecccccccCCCCccccC-----
Q 018826 28 LRNLEVLDLVSNNLNGTIPKEIGT-LRNLMGLHLSSNNLT--GELPQEIENLKSLIRLFVRNNTLGGPIPSTLFR----- 99 (350)
Q Consensus 28 l~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~~~~i~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~----- 99 (350)
+++++.|.++++- .......+.. +++|+.|+|++|++. ..... .++.++.+.+..+. +...+|.+
T Consensus 24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~---I~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANF---VPAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTE---ECTTTTEEEETTE
T ss_pred hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccc---cCHHHhccccccc
Confidence 5678888887652 1111122333 789999999999987 22221 22334555555553 34467777
Q ss_pred ---CCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCcc----ccCccccccCC
Q 018826 100 ---LTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQL----HSSIPLEIGNL 172 (350)
Q Consensus 100 ---l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~----~~~~~~~l~~~ 172 (350)
+++|+.+++.. .++.+...+|.+|++|+.+++..|.+..+...+|..+.++..+....... ......++..+
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 99999999998 78877788999999999999999999888888998888888887755321 11223344445
Q ss_pred CCCC-EEEccCCcc------------------------cccCCccc-CCCCCCCEEECCCCcCccccchhhhCCCCCCEE
Q 018826 173 SALE-ELDLSDNKI------------------------HGIIPDEL-TKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYL 226 (350)
Q Consensus 173 ~~L~-~L~l~~n~~------------------------~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 226 (350)
..++ .+.+..... .......+ ..+++|+.+++++|.++.+...+|..+++|+.|
T Consensus 176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 5555 333322110 00000001 126789999999888887777888889999999
Q ss_pred EccCCcccccCCccccCCCCCC-EEECCCCcCcccCchhhcccCCCCEEEccccccccccCCccccc
Q 018826 227 DLSKNKLGGSIPTEIGNCSELK-NLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTITKTLCPM 292 (350)
Q Consensus 227 ~l~~n~i~~~~~~~~~~~~~L~-~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p~~~~~~ 292 (350)
++++| ++.....+|.++++|+ .+++.+ .++...+.+|.++++|+.+++++|.++...+..|..+
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~ 320 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNG 320 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTT
T ss_pred ECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCC
Confidence 99887 6657777888889998 899988 7776777888888999999998888886666666443
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=3.2e-17 Score=137.23 Aligned_cols=136 Identities=27% Similarity=0.318 Sum_probs=96.4
Q ss_pred CCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEEC
Q 018826 125 KNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNI 204 (350)
Q Consensus 125 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 204 (350)
++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+++..+..+..+++|+.|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 44555555555555444445555555566666666555444445566677777777777777666666777888888888
Q ss_pred CCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccC
Q 018826 205 SSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTI 261 (350)
Q Consensus 205 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 261 (350)
++|.++ .+|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+....
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 888887 56777788889999999999888666667888889999999999887543
No 116
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.75 E-value=1.3e-16 Score=144.35 Aligned_cols=256 Identities=10% Similarity=0.051 Sum_probs=186.1
Q ss_pred CcceecCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCC
Q 018826 15 TENTCTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIP 94 (350)
Q Consensus 15 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 94 (350)
+.++..-..+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+....+.+|.+|++|+.+.+.+|.+..+..
T Consensus 122 ~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~ 197 (401)
T 4fdw_A 122 NSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPA 197 (401)
T ss_dssp TTCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECT
T ss_pred CccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEech
Confidence 34444445567665 6888888665 555666777774 688888875 5665666778888888888888888776666
Q ss_pred ccccCCCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccCCCC
Q 018826 95 STLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSA 174 (350)
Q Consensus 95 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~ 174 (350)
.+|. ..+|+.+.+..+ +..+...+|.++++|+.+.+..+ +..+...+|.. .+|+.+.+. +.+......+|..+++
T Consensus 198 ~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~ 272 (401)
T 4fdw_A 198 STFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPE 272 (401)
T ss_dssp TTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTT
T ss_pred hhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCC
Confidence 6665 578888888744 56566677888888888888764 55566667777 678888884 4455455677888888
Q ss_pred CCEEEccCCccc-----ccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCE
Q 018826 175 LEELDLSDNKIH-----GIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKN 249 (350)
Q Consensus 175 L~~L~l~~n~~~-----~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~ 249 (350)
|+.+.+.++.+. .+...+|.++++|+.+.+.+ .++.+...+|.++++|+.+.+..+ ++.....+|.++ +|+.
T Consensus 273 L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~ 349 (401)
T 4fdw_A 273 LAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKE 349 (401)
T ss_dssp CCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCE
T ss_pred CCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCE
Confidence 888888876654 45667788888888888884 466666778888888888888655 555667788888 8888
Q ss_pred EECCCCcCcccCchhhcccC-CCCEEEccccccc
Q 018826 250 LTLNHNSLDGTIRPEMGEIL-LLQNLDLSHNNLS 282 (350)
Q Consensus 250 L~l~~n~i~~~~~~~~~~~~-~L~~L~l~~N~i~ 282 (350)
+++.+|.+.......|.+++ .++.|.+..+.+.
T Consensus 350 l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 350 VKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp EEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred EEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 88888888766666676664 6778888777654
No 117
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.75 E-value=4.1e-21 Score=183.48 Aligned_cols=78 Identities=12% Similarity=0.146 Sum_probs=34.8
Q ss_pred CCCCCCEEECCCCcCcccCchhhcc-cCCCCEEEccccccccccCCcc----ccccc-CCCCCcceecCCC----CCCCC
Q 018826 243 NCSELKNLTLNHNSLDGTIRPEMGE-ILLLQNLDLSHNNLSGTITKTL----CPMHS-DMSFNRLEGEIPS----NLRDN 312 (350)
Q Consensus 243 ~~~~L~~L~l~~n~i~~~~~~~~~~-~~~L~~L~l~~N~i~~~~p~~~----~~~~~-~l~~N~l~~~ip~----~~~~~ 312 (350)
.+++|+.|++++ .+++.....+.. +++|+.|++++|.+++..+..+ ..... ++++|.+++..+. .++.+
T Consensus 430 ~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L 508 (594)
T 2p1m_B 430 HCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETM 508 (594)
T ss_dssp HCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGS
T ss_pred hCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCC
Confidence 345555555544 443332233322 4556666666665554444333 11111 5555555432211 12445
Q ss_pred CCcccCCCC
Q 018826 313 PPKSFAGNT 321 (350)
Q Consensus 313 ~~~~~~~n~ 321 (350)
..+.+.+|+
T Consensus 509 ~~L~l~~~~ 517 (594)
T 2p1m_B 509 RSLWMSSCS 517 (594)
T ss_dssp SEEEEESSC
T ss_pred CEEeeeCCC
Confidence 555555553
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=5.3e-18 Score=145.00 Aligned_cols=168 Identities=20% Similarity=0.273 Sum_probs=91.3
Q ss_pred CCCCcEEecccccccCCCCccccCCCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEe
Q 018826 76 LKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLD 155 (350)
Q Consensus 76 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 155 (350)
+.+++.+.++++.+.+.. .+..+++|++|++++|.+... + .+..+++|++|++++|.+....+ +..+++|+.|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 445556666666665332 355667777777777766633 2 45666667777776666665433 55666666666
Q ss_pred cCCCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccc
Q 018826 156 LSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGG 235 (350)
Q Consensus 156 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 235 (350)
+++|.+.+. +. +.. ++|+.|++++|.+++. ..+..+++|+.|++++|.+++. + .+..+++|+.|++++|.+++
T Consensus 92 L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence 666665432 21 111 5555555555555532 2345555555555555555532 2 34455555555555555553
Q ss_pred cCCccccCCCCCCEEECCCCcCc
Q 018826 236 SIPTEIGNCSELKNLTLNHNSLD 258 (350)
Q Consensus 236 ~~~~~~~~~~~L~~L~l~~n~i~ 258 (350)
. ..+..+++|+.|++++|+++
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEE
T ss_pred h--HHhccCCCCCEEeCCCCccc
Confidence 3 33444555555555555554
No 119
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.75 E-value=5.6e-20 Score=175.64 Aligned_cols=113 Identities=12% Similarity=0.128 Sum_probs=52.8
Q ss_pred CCCCCEEEccCCcccccCCcccC-CCCCCCEEECC--C----CcCccc-----cchhhhCCCCCCEEEccCCcccccCCc
Q 018826 172 LSALEELDLSDNKIHGIIPDELT-KLSQLKNLNIS--S----NLLSGQ-----IPSAIGKLFNLKYLDLSKNKLGGSIPT 239 (350)
Q Consensus 172 ~~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~--~----n~~~~~-----~~~~~~~~~~L~~L~l~~n~i~~~~~~ 239 (350)
+++|+.|.+..+.+++.....+. .+++|+.|+++ + +.+++. .+..+..+++|+.|++++ .+++..+.
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~ 449 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE 449 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence 44555554444444332222222 34566666665 2 233311 111234455566666654 44433222
Q ss_pred cccC-CCCCCEEECCCCcCcccCchhh-cccCCCCEEEcccccccccc
Q 018826 240 EIGN-CSELKNLTLNHNSLDGTIRPEM-GEILLLQNLDLSHNNLSGTI 285 (350)
Q Consensus 240 ~~~~-~~~L~~L~l~~n~i~~~~~~~~-~~~~~L~~L~l~~N~i~~~~ 285 (350)
.+.. +++|+.|++++|.+++.....+ ..+++|+.|++++|.+++..
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~ 497 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKA 497 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHH
T ss_pred HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHH
Confidence 2322 5566666666666654333333 44566666666666664433
No 120
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=2.9e-17 Score=134.25 Aligned_cols=109 Identities=32% Similarity=0.338 Sum_probs=50.6
Q ss_pred cCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCc-ccccCCcccCCCCCCC
Q 018826 122 GHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNK-IHGIIPDELTKLSQLK 200 (350)
Q Consensus 122 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~ 200 (350)
..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|. ++.. + .+..+++|+
T Consensus 85 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~ 162 (197)
T 4ezg_A 85 SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELK 162 (197)
T ss_dssp TTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCC
T ss_pred hcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCC
Confidence 333444444444443333223333344444444444444443334444444555555555554 3322 2 355556666
Q ss_pred EEECCCCcCccccchhhhCCCCCCEEEccCCccc
Q 018826 201 NLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLG 234 (350)
Q Consensus 201 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~ 234 (350)
.|++++|.+++. + .+..+++|+.|++++|++.
T Consensus 163 ~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 163 SLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp EEECTTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred EEECCCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence 666666666532 2 4556666666666666654
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=8.9e-18 Score=143.59 Aligned_cols=167 Identities=24% Similarity=0.315 Sum_probs=84.7
Q ss_pred CCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcEEEccCCccccccCccccCCCCCCEEEc
Q 018826 53 RNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFI 132 (350)
Q Consensus 53 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 132 (350)
.++..++++++.+.+.. .+..+++|++|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 33444455555554222 344555555555555555432 2 34455555555555555554322 555555555555
Q ss_pred ccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccc
Q 018826 133 KVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQ 212 (350)
Q Consensus 133 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 212 (350)
++|.+..... +.. ++|+.|++++|.+.+. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++.
T Consensus 93 ~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 93 NRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC
T ss_pred CCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch
Confidence 5555554321 112 5555555555555432 2345555555555555555543 1355555555555555555533
Q ss_pred cchhhhCCCCCCEEEccCCccc
Q 018826 213 IPSAIGKLFNLKYLDLSKNKLG 234 (350)
Q Consensus 213 ~~~~~~~~~~L~~L~l~~n~i~ 234 (350)
..+..+++|+.|++++|.++
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEE
T ss_pred --HHhccCCCCCEEeCCCCccc
Confidence 34455555555555555555
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=3.2e-20 Score=175.23 Aligned_cols=189 Identities=20% Similarity=0.165 Sum_probs=100.0
Q ss_pred CCCCCcEEecccccccCCCCccccCCCCCcEEEccCCc-------------cccccCccccCCCCCCEEE-cccCccccc
Q 018826 75 NLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQ-------------FNGTIPREIGHLKNLTYLF-IKVNKLTGA 140 (350)
Q Consensus 75 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-------------l~~~~~~~l~~l~~L~~L~-l~~n~~~~~ 140 (350)
.+++|+.|++++|.+. .+|..+..+++|+.|++++|. ..+..+..+..+++|+.|+ ++.|.+.
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-- 423 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-- 423 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH--
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc--
Confidence 3455555555555554 334445555555555554332 2233444555556666655 3333221
Q ss_pred cchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCC
Q 018826 141 IRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKL 220 (350)
Q Consensus 141 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 220 (350)
.|+.+.+.+|.+... +. ..|+.|++++|.+++. |. +..+++|+.|++++|.++ .+|..++.+
T Consensus 424 ---------~L~~l~l~~n~i~~l-~~-----~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 485 (567)
T 1dce_A 424 ---------DLRSKFLLENSVLKM-EY-----ADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPPALAAL 485 (567)
T ss_dssp ---------HHHHHHHHHHHHHHH-HH-----TTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCGGGGGC
T ss_pred ---------hhhhhhhhccccccc-Cc-----cCceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccchhhhcC
Confidence 222233333333211 11 1356666666666542 33 566666666666666666 455566666
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccC-chhhcccCCCCEEEccccccccccC
Q 018826 221 FNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTI-RPEMGEILLLQNLDLSHNNLSGTIT 286 (350)
Q Consensus 221 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~~L~~L~l~~N~i~~~~p 286 (350)
++|+.|++++|.+++ +| .+..+++|+.|++++|++++.. |..+..+++|+.|++++|++++.+|
T Consensus 486 ~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 486 RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 666666666666663 34 4556666666666666666554 5566666666666666666665444
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=1.6e-19 Score=170.50 Aligned_cols=105 Identities=30% Similarity=0.380 Sum_probs=54.3
Q ss_pred ccEEecCCCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccC
Q 018826 151 LLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSK 230 (350)
Q Consensus 151 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 230 (350)
|+.|++++|.+.+ +|. +..+++|+.|++++|.++ ..|..+..+++|+.|++++|.+++ +| .+..+++|+.|++++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 4555555555542 333 455555555555555555 334455555555555555555553 33 455555555555555
Q ss_pred CcccccC-CccccCCCCCCEEECCCCcCccc
Q 018826 231 NKLGGSI-PTEIGNCSELKNLTLNHNSLDGT 260 (350)
Q Consensus 231 n~i~~~~-~~~~~~~~~L~~L~l~~n~i~~~ 260 (350)
|.+++.. |..+..+++|+.|++++|++++.
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 5555433 55555555555555555555543
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=1.9e-16 Score=125.89 Aligned_cols=134 Identities=25% Similarity=0.214 Sum_probs=110.2
Q ss_pred cCCccEEecCCCccc-cCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEE
Q 018826 148 LTSLLQLDLSSNQLH-SSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYL 226 (350)
Q Consensus 148 ~~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 226 (350)
.++|+.|++++|.+. +.++..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++..|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 467888888888776 45666677788888999988888765 678888999999999999987678888889999999
Q ss_pred EccCCcccccC-CccccCCCCCCEEECCCCcCcccCc---hhhcccCCCCEEEcccccccc
Q 018826 227 DLSKNKLGGSI-PTEIGNCSELKNLTLNHNSLDGTIR---PEMGEILLLQNLDLSHNNLSG 283 (350)
Q Consensus 227 ~l~~n~i~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~---~~~~~~~~L~~L~l~~N~i~~ 283 (350)
++++|.+++.. +..+..+++|+.|++++|++++..+ ..+..+++|+.|++++|.+..
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 99999998532 2678889999999999999986655 478889999999999998873
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=3.6e-16 Score=121.69 Aligned_cols=129 Identities=24% Similarity=0.235 Sum_probs=107.8
Q ss_pred cCCccEEecCCCccc-cCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEE
Q 018826 148 LTSLLQLDLSSNQLH-SSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYL 226 (350)
Q Consensus 148 ~~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 226 (350)
.++++.|++++|.+. +..+..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++..|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 467888888888886 46677778888999999999988866 678889999999999999987678888889999999
Q ss_pred EccCCccccc-CCccccCCCCCCEEECCCCcCcccCc---hhhcccCCCCEEEccc
Q 018826 227 DLSKNKLGGS-IPTEIGNCSELKNLTLNHNSLDGTIR---PEMGEILLLQNLDLSH 278 (350)
Q Consensus 227 ~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~i~~~~~---~~~~~~~~L~~L~l~~ 278 (350)
++++|.+++. .+..+..+++|++|++++|++++..+ ..+..+++|+.|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999853 33678889999999999999987665 4688889999998864
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.66 E-value=1.6e-15 Score=121.60 Aligned_cols=133 Identities=26% Similarity=0.307 Sum_probs=105.3
Q ss_pred ccEEecCCCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccC
Q 018826 151 LLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSK 230 (350)
Q Consensus 151 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 230 (350)
.+.++++++++. .+|..+ .++++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 456777777765 334332 36788888888888876666778888999999999988877667778889999999999
Q ss_pred CcccccCCccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEccccccccccC
Q 018826 231 NKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTIT 286 (350)
Q Consensus 231 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p 286 (350)
|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99986666677888999999999999987666667788899999999998886554
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=8.5e-16 Score=124.87 Aligned_cols=113 Identities=24% Similarity=0.347 Sum_probs=84.2
Q ss_pred CccEEecCCCccccCccc-cccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEc
Q 018826 150 SLLQLDLSSNQLHSSIPL-EIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDL 228 (350)
Q Consensus 150 ~L~~L~l~~n~~~~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 228 (350)
+++.|++++|.+.+..+. .+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 566666666666544332 3666777777777777777776777777888888888888887777777778888888888
Q ss_pred cCCcccccCCccccCCCCCCEEECCCCcCcccCc
Q 018826 229 SKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIR 262 (350)
Q Consensus 229 ~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 262 (350)
++|++++..|..+..+++|++|++++|.+.+..+
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 8888887777778888888888888888875543
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=8.4e-16 Score=122.14 Aligned_cols=131 Identities=23% Similarity=0.166 Sum_probs=70.7
Q ss_pred CCcCEEEccCCcCC-CCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcEEE
Q 018826 29 RNLEVLDLVSNNLN-GTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLY 107 (350)
Q Consensus 29 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 107 (350)
++|+.|++++|.++ +..+..+..+++|++|++++|.+... ..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 55666666666655 34444455566666666666665543 4455566666666666665544444444456666666
Q ss_pred ccCCccccccC-ccccCCCCCCEEEcccCccccccc---hhhhccCCccEEecCCCcc
Q 018826 108 LGFNQFNGTIP-REIGHLKNLTYLFIKVNKLTGAIR---STLGQLTSLLQLDLSSNQL 161 (350)
Q Consensus 108 l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~~n~~ 161 (350)
+++|.+++... ..+..+++|++|++++|.+..... ..+..+++|+.|++++|..
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 66665554321 345555555555555555554332 2444455555555554443
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=2.6e-15 Score=121.98 Aligned_cols=128 Identities=23% Similarity=0.314 Sum_probs=95.9
Q ss_pred cEEecCCCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCC
Q 018826 152 LQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKN 231 (350)
Q Consensus 152 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 231 (350)
+.++++++.+. .+|..+ .++++.|++++|.++ ..+..+..+++|+.|++++|.+++..+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45667666665 444433 257788888888777 44567777888888888888888777777888888888888888
Q ss_pred cccccCCccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEcccccccc
Q 018826 232 KLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSG 283 (350)
Q Consensus 232 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~ 283 (350)
.+++..+..|..+++|+.|++++|+++...+..+..+++|+.|++++|++..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 8887666778888888888888888886666667778888888888887753
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.64 E-value=1e-16 Score=155.87 Aligned_cols=186 Identities=24% Similarity=0.263 Sum_probs=100.6
Q ss_pred CCCcEEEccCCccccccCccccCCCCCCEEEc-----ccCccccccchhhhccCCccEEecCCCccccCccccccCCCCC
Q 018826 101 TNLEVLYLGFNQFNGTIPREIGHLKNLTYLFI-----KVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSAL 175 (350)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l-----~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L 175 (350)
+.+..|++.++.+... +..+....+|..+.+ ..|.+. ..+..+..++.|+.|+|++|.+. .++..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 5677777877776642 333322333333322 222222 33455667777888888887776 555555577778
Q ss_pred CEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCC
Q 018826 176 EELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHN 255 (350)
Q Consensus 176 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n 255 (350)
+.|+|++|.++ ..|..+..+++|+.|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..|..+++|+.|++++|
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence 88888888777 55666777788888888888777 55777777788888888888776 66666777788888888888
Q ss_pred cCcccCchhhcccCC-CCEEEccccccccccCCccccc
Q 018826 256 SLDGTIRPEMGEILL-LQNLDLSHNNLSGTITKTLCPM 292 (350)
Q Consensus 256 ~i~~~~~~~~~~~~~-L~~L~l~~N~i~~~~p~~~~~~ 292 (350)
.+++.+|..+..... +..+++++|.+++.+|..+..+
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~l 364 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRFI 364 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----
T ss_pred ccCCCChHHHhhcchhhhHHhhccCcccCcCcccccee
Confidence 887766666543322 2346777888877777766544
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.63 E-value=1.5e-16 Score=154.73 Aligned_cols=181 Identities=25% Similarity=0.254 Sum_probs=97.2
Q ss_pred CCCccccCCCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccC
Q 018826 92 PIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGN 171 (350)
Q Consensus 92 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~ 171 (350)
..+..+..++.|+.|++++|.+. .++..+..+++|++|+|++|.+. ..+..+..+++|+.|+|++|.+. .+|..+..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 34556666777777777777776 44445556777777777777777 34456677777777777777776 55777777
Q ss_pred CCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCC-CCEEEccCCcccccCCccccCCCCCCEE
Q 018826 172 LSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFN-LKYLDLSKNKLGGSIPTEIGNCSELKNL 250 (350)
Q Consensus 172 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-L~~L~l~~n~i~~~~~~~~~~~~~L~~L 250 (350)
+++|+.|++++|.++ .+|..|..+++|+.|+|++|.+++..|..+..... +..+++++|.+++..|. .|+.|
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l 364 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFI 364 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C----
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------cccee
Confidence 778888888888776 44556778888888888888887776666643321 22366777777765553 44555
Q ss_pred ECCCC--------cCcccCchhhcccCCCCEEEccccccc
Q 018826 251 TLNHN--------SLDGTIRPEMGEILLLQNLDLSHNNLS 282 (350)
Q Consensus 251 ~l~~n--------~i~~~~~~~~~~~~~L~~L~l~~N~i~ 282 (350)
++++| .+.+..+..+..+..+....++.|.+.
T Consensus 365 ~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 365 EINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp -------------------------------------CCC
T ss_pred EeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 56655 333333334444555566666777654
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=1.1e-15 Score=119.01 Aligned_cols=128 Identities=21% Similarity=0.178 Sum_probs=86.9
Q ss_pred CCCcCEEEccCCcCC-CCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcEE
Q 018826 28 LRNLEVLDLVSNNLN-GTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVL 106 (350)
Q Consensus 28 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 106 (350)
.++|+.|+++++.++ +..+..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 366777777777776 45566667777777777777777654 556677777777777777776556555567777777
Q ss_pred EccCCccccc-cCccccCCCCCCEEEcccCccccccc---hhhhccCCccEEecC
Q 018826 107 YLGFNQFNGT-IPREIGHLKNLTYLFIKVNKLTGAIR---STLGQLTSLLQLDLS 157 (350)
Q Consensus 107 ~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~ 157 (350)
++++|.+++. .+..+..+++|++|++++|.+..... ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7777777643 22556667777777777776665543 356666667666654
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=1.1e-14 Score=118.27 Aligned_cols=127 Identities=27% Similarity=0.394 Sum_probs=88.6
Q ss_pred CEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcEEEccCC
Q 018826 32 EVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFN 111 (350)
Q Consensus 32 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 111 (350)
++++++++.++. +|..+ .++|++|++++|.++ .+|..|.++++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCc-CCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 467777777763 34333 256777777777777 55567777777777777777777666667777777777777777
Q ss_pred ccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccc
Q 018826 112 QFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLH 162 (350)
Q Consensus 112 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 162 (350)
.+++..+..|..+++|++|++++|.+.......+..+++|+.|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 777666666777777777777777777665556666666777766666543
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.60 E-value=2.9e-15 Score=119.96 Aligned_cols=135 Identities=21% Similarity=0.225 Sum_probs=98.3
Q ss_pred hhccCCccEEecCCCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCC
Q 018826 145 LGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLK 224 (350)
Q Consensus 145 ~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 224 (350)
+..+.+|+.|++++|.+.. ++......++|+.|++++|.+++. ..+..+++|+.|++++|.+++..+..+..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 3445666777777776653 333222334788888888887765 5677888888888888888866555568888899
Q ss_pred EEEccCCcccccCCc--cccCCCCCCEEECCCCcCcccCch---hhcccCCCCEEEcccccccc
Q 018826 225 YLDLSKNKLGGSIPT--EIGNCSELKNLTLNHNSLDGTIRP---EMGEILLLQNLDLSHNNLSG 283 (350)
Q Consensus 225 ~L~l~~n~i~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~---~~~~~~~L~~L~l~~N~i~~ 283 (350)
+|++++|.++ ..|. .+..+++|+.|++++|.++..... .+..+++|+.||+++|.+..
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 9999998887 4444 677888899999999988844322 47788899999999887653
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=1.9e-14 Score=115.33 Aligned_cols=132 Identities=27% Similarity=0.268 Sum_probs=98.5
Q ss_pred CEEEcccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCC
Q 018826 128 TYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSN 207 (350)
Q Consensus 128 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 207 (350)
+.++++++.+...... -.++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|
T Consensus 10 ~~l~~~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSSCCTT---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCccCCCC---CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 4455555555443211 1356777777777776555556677788888888888887666666788888999999999
Q ss_pred cCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccCc
Q 018826 208 LLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIR 262 (350)
Q Consensus 208 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 262 (350)
.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 8887777777888999999999999986666667788999999999999886543
No 136
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.59 E-value=7.2e-14 Score=126.49 Aligned_cols=263 Identities=11% Similarity=0.025 Sum_probs=150.5
Q ss_pred ceecCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccc---------
Q 018826 17 NTCTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNN--------- 87 (350)
Q Consensus 17 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n--------- 87 (350)
.+.--..+|.++.+|+.+.+.. .++.+...+|.+|++|+.+++..+ +......+|.++.+|+.+.+..+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF 136 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAF 136 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceee
Confidence 3444455788888888888864 366566678888888888888654 44344556777776666555432
Q ss_pred ------------cccCCCCccccCCCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEe
Q 018826 88 ------------TLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLD 155 (350)
Q Consensus 88 ------------~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 155 (350)
........+|.++.+|+.+.+..+. ..+....|.++++|+.+.+..+ +..+...++..+..|+.+.
T Consensus 137 ~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~ 214 (394)
T 4fs7_A 137 KGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENME 214 (394)
T ss_dssp TTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCC
T ss_pred ecccccccccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceee
Confidence 1111233467777888888887543 3355567777888888777654 3334444555555554444
Q ss_pred cCCCc---------------------cccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccc
Q 018826 156 LSSNQ---------------------LHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIP 214 (350)
Q Consensus 156 l~~n~---------------------~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 214 (350)
+..+. .......++..+..++.+.+..+... .....+..+..++.+......+. .
T Consensus 215 ~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~ 290 (394)
T 4fs7_A 215 FPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---E 290 (394)
T ss_dssp CCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---T
T ss_pred cCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---c
Confidence 43211 11122345566777888887765432 44455566666666655544322 2
Q ss_pred hhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEccccccccccCCccc
Q 018826 215 SAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTITKTLC 290 (350)
Q Consensus 215 ~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p~~~~ 290 (350)
..|..+.+|+.+.+.++ ++.....+|.+|.+|+.+++..+ ++.....+|.++.+|+.+++..+ ++......|.
T Consensus 291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~ 363 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQ 363 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBT
T ss_pred ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhh
Confidence 34555566666666543 33344455556666666666433 44444455555666666666544 4434444443
No 137
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.55 E-value=3.9e-13 Score=121.67 Aligned_cols=242 Identities=12% Similarity=0.065 Sum_probs=155.4
Q ss_pred CCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCcEEEccCCc--------
Q 018826 41 LNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQ-------- 112 (350)
Q Consensus 41 ~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-------- 112 (350)
++.+...+|.++.+|+.+.+.. .++.+...+|.+|++|+.+.+..+ +..+...+|.++.+|+.+.+..+-
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF 136 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAF 136 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceee
Confidence 4545667788888888888864 355455677888888888888754 444555677777777766554321
Q ss_pred -------------cccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCCccccCccccccCCCCCCEEE
Q 018826 113 -------------FNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELD 179 (350)
Q Consensus 113 -------------l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~ 179 (350)
.......+|.++.+|+.+.+..+ +..+...+|..+.+|+.+.+..+ +......++..+..|+.+.
T Consensus 137 ~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~ 214 (394)
T 4fs7_A 137 KGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENME 214 (394)
T ss_dssp TTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCC
T ss_pred ecccccccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceee
Confidence 11122345677788888888654 34455667888888888888654 2223334444444444444
Q ss_pred ccCC---------------------cccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCC
Q 018826 180 LSDN---------------------KIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIP 238 (350)
Q Consensus 180 l~~n---------------------~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 238 (350)
+..+ .++......+..+..++.+.+..+... .....|..+..++.+......+. .
T Consensus 215 ~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~ 290 (394)
T 4fs7_A 215 FPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---E 290 (394)
T ss_dssp CCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---T
T ss_pred cCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---c
Confidence 3322 112233445667778888888776443 55667788888888877765443 2
Q ss_pred ccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEccccccccccCCccccc
Q 018826 239 TEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTITKTLCPM 292 (350)
Q Consensus 239 ~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p~~~~~~ 292 (350)
.+|..+.+|+.+.+..+ ++.....+|..+.+|+.+++.++ ++......|..+
T Consensus 291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c 342 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGC 342 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTC
T ss_pred ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCC
Confidence 45677888888888765 55556667888888888888654 665556666554
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=2e-14 Score=115.09 Aligned_cols=132 Identities=22% Similarity=0.193 Sum_probs=70.9
Q ss_pred cCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccccCCCCCc
Q 018826 25 IGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLE 104 (350)
Q Consensus 25 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 104 (350)
+.++++|+.|++++|.++.. +......++|++|++++|.+++. ..|..+++|++|++++|.+.+..+..|..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 34556666666666666533 33222233666666666666533 3455666666666666666544434445566666
Q ss_pred EEEccCCccccccCc--cccCCCCCCEEEcccCccccccch---hhhccCCccEEecCCCc
Q 018826 105 VLYLGFNQFNGTIPR--EIGHLKNLTYLFIKVNKLTGAIRS---TLGQLTSLLQLDLSSNQ 160 (350)
Q Consensus 105 ~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~---~~~~~~~L~~L~l~~n~ 160 (350)
+|++++|.+.. .+. .+..+++|++|++++|.+...... .+..+++|+.|++++|.
T Consensus 92 ~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 92 ELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 66666666542 222 455555666666665555433221 24455555555555444
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=2.3e-13 Score=108.10 Aligned_cols=107 Identities=21% Similarity=0.277 Sum_probs=76.9
Q ss_pred CCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCC
Q 018826 175 LEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNH 254 (350)
Q Consensus 175 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~ 254 (350)
.+.+++++|.++. .|..+ .++|+.|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4567777777664 33333 26777788887777766677777777888888888887766666667778888888888
Q ss_pred CcCcccCchhhcccCCCCEEEccccccccc
Q 018826 255 NSLDGTIRPEMGEILLLQNLDLSHNNLSGT 284 (350)
Q Consensus 255 n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~ 284 (350)
|++++..+..+..+++|+.|++++|+++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 888766666677778888888888877644
No 140
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.48 E-value=6.1e-12 Score=113.82 Aligned_cols=109 Identities=6% Similarity=0.018 Sum_probs=72.1
Q ss_pred cccCCCC-CcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCc---CCCCcchhccCCCCCcEEecccccccCCCCcccc
Q 018826 23 KEIGSLR-NLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNN---LTGELPQEIENLKSLIRLFVRNNTLGGPIPSTLF 98 (350)
Q Consensus 23 ~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~---i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 98 (350)
.+|.++. .|+.+.+-.+ ++.+...+|.+|.+|+.+.+..+. ++.....+|.++.+|+.+.+..+ ++.+...+|.
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence 4566664 4888888543 555667788888888888887653 44444567777888887777654 3445556677
Q ss_pred CCCCCcEEEccCCccccccCccccCCCCCCEEEccc
Q 018826 99 RLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKV 134 (350)
Q Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 134 (350)
.+.+|+.+.+..+ +..+....|..+..|+.+.+..
T Consensus 135 ~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 135 HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCT
T ss_pred hhcccccccccce-eeeecccceecccccccccccc
Confidence 7778888777643 2334445666677777766643
No 141
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.47 E-value=7.8e-12 Score=113.09 Aligned_cols=252 Identities=12% Similarity=0.139 Sum_probs=165.2
Q ss_pred CCcccCCCCCcCEEEccCCc---CCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCCCccc
Q 018826 21 IPKEIGSLRNLEVLDLVSNN---LNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPIPSTL 97 (350)
Q Consensus 21 ~~~~~~~l~~L~~L~l~~~~---~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 97 (350)
-..+|.+|++|+.+.+..+. ++.....+|..+.+|+.+.+..+ +......+|.++.+|+.+.+..+ ...+...+|
T Consensus 79 g~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F 156 (394)
T 4gt6_A 79 GSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMF 156 (394)
T ss_dssp CTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTT
T ss_pred hHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeecccce
Confidence 34568899999999997653 56566778999999999888664 44455667888999999999754 333556778
Q ss_pred cCCCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCccEEecCCC------------------
Q 018826 98 FRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSLLQLDLSSN------------------ 159 (350)
Q Consensus 98 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n------------------ 159 (350)
..+..|+.+.+..+ ++.+...+|.. ..|+.+.+..+. ......++..+..++.......
T Consensus 157 ~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (394)
T 4gt6_A 157 SYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKV-TRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDY 233 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCE
T ss_pred ecccccccccccce-eeEeccccccc-cceeEEEECCcc-cccccchhhhccccceecccccccccccceeecccccccc
Confidence 88888888888754 33344445543 467777664432 2233344444444444433221
Q ss_pred ------------------ccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCC
Q 018826 160 ------------------QLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLF 221 (350)
Q Consensus 160 ------------------~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 221 (350)
.+......+|..+..|+.+.+..+.. .....+|..++.|+.+.+.. .++.+...+|.++.
T Consensus 234 ~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~ 311 (394)
T 4gt6_A 234 ALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCI 311 (394)
T ss_dssp EEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCT
T ss_pred cccccccccccceEEcCCcceEcccceeeecccccEEecccccc-eecCcccccccccccccCCC-cccccCceeecCCC
Confidence 11112234566677777777765433 35556677777888888763 34545566777888
Q ss_pred CCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEcccccc
Q 018826 222 NLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNL 281 (350)
Q Consensus 222 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i 281 (350)
+|+.+.+.++ ++.....+|.+|.+|+.+.+..+ ++.....+|.++.+|+.+++.++..
T Consensus 312 ~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 312 SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 8888888754 44455667778888888888654 5556666777888888888877644
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.47 E-value=4.8e-13 Score=106.63 Aligned_cols=105 Identities=20% Similarity=0.297 Sum_probs=69.4
Q ss_pred CEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCC
Q 018826 176 EELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHN 255 (350)
Q Consensus 176 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n 255 (350)
+.++++++.++. .|..+. ++|+.|++++|.+++..|..|..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 556666666653 333332 56777777777777666666777777777777777777554455666777777777777
Q ss_pred cCcccCchhhcccCCCCEEEcccccccc
Q 018826 256 SLDGTIRPEMGEILLLQNLDLSHNNLSG 283 (350)
Q Consensus 256 ~i~~~~~~~~~~~~~L~~L~l~~N~i~~ 283 (350)
+|++..+..+..+++|+.|++++|++..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 7775555556677777777777777663
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=1.3e-12 Score=103.77 Aligned_cols=108 Identities=28% Similarity=0.332 Sum_probs=92.7
Q ss_pred ccEEecCCCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccC
Q 018826 151 LLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSK 230 (350)
Q Consensus 151 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 230 (350)
.+.++++++.+. .+|..+ .+.++.|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 567888888876 455544 37899999999999988888899999999999999999987777889999999999999
Q ss_pred CcccccCCccccCCCCCCEEECCCCcCcccC
Q 018826 231 NKLGGSIPTEIGNCSELKNLTLNHNSLDGTI 261 (350)
Q Consensus 231 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 261 (350)
|++++..+..|..+++|+.|++++|.++...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 9999766677889999999999999998553
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=1.1e-15 Score=124.92 Aligned_cols=109 Identities=26% Similarity=0.310 Sum_probs=52.1
Q ss_pred ccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCC-ccccCCCCC
Q 018826 169 IGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIP-TEIGNCSEL 247 (350)
Q Consensus 169 l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~~L 247 (350)
+..+++|+.|++++|.++. .+..+..+++|+.|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|
T Consensus 66 ~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L 142 (198)
T 1ds9_A 66 LSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKL 142 (198)
T ss_dssp HHHHTTCCEEEEEEEEECS-CSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTC
T ss_pred cccCCCCCEEECCCCCccc-ccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCC
Confidence 3333444444444444431 22223333455555555555543 22 34455555555555555553211 234555566
Q ss_pred CEEECCCCcCcccCch----------hhcccCCCCEEEccccccc
Q 018826 248 KNLTLNHNSLDGTIRP----------EMGEILLLQNLDLSHNNLS 282 (350)
Q Consensus 248 ~~L~l~~n~i~~~~~~----------~~~~~~~L~~L~l~~N~i~ 282 (350)
++|++++|++++..|. .+..+++|+.|| +|.++
T Consensus 143 ~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 143 EDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 6666666655443322 255566666665 55554
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=2.3e-15 Score=123.03 Aligned_cols=110 Identities=26% Similarity=0.327 Sum_probs=59.4
Q ss_pred hccCCCCCcEEecccccccCCCCccccCCCCCcEEEccCCccccccCccccCCCCCCEEEcccCccccccchhhhccCCc
Q 018826 72 EIENLKSLIRLFVRNNTLGGPIPSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNKLTGAIRSTLGQLTSL 151 (350)
Q Consensus 72 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L 151 (350)
.+..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+. .++..+..+++|++|++++|.+... ..+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l--~~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH--HHHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC--CccccCCCC
Confidence 55566666666666666554 33 4555666666666666655 3344444455666666666655543 135555556
Q ss_pred cEEecCCCccccCcc-ccccCCCCCCEEEccCCccc
Q 018826 152 LQLDLSSNQLHSSIP-LEIGNLSALEELDLSDNKIH 186 (350)
Q Consensus 152 ~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~~~ 186 (350)
+.|++++|.+.+... ..+..+++|+.|++++|.+.
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 666666655542211 23444555555555555444
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.42 E-value=1.9e-14 Score=128.87 Aligned_cols=169 Identities=21% Similarity=0.202 Sum_probs=73.5
Q ss_pred CCCcEEEccCCccccccCccc----c-CCCCCCEEEcccCccccccchhh-hccCCccEEecCCCccccCccccccCCCC
Q 018826 101 TNLEVLYLGFNQFNGTIPREI----G-HLKNLTYLFIKVNKLTGAIRSTL-GQLTSLLQLDLSSNQLHSSIPLEIGNLSA 174 (350)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~l----~-~l~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~l~~~~~ 174 (350)
+.|+.|++++|.++......+ . ..++|++|++++|.+.......+ ..+++|+.|++++|.+.+.....+.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~---- 147 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR---- 147 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH----
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH----
Confidence 456666666666553222222 1 12456666666665543322222 2234455555555554432222211
Q ss_pred CCEEEccCCcccccCCccc-CCCCCCCEEECCCCcCccc----cchhhhCCCCCCEEEccCCccccc----CCccccCCC
Q 018826 175 LEELDLSDNKIHGIIPDEL-TKLSQLKNLNISSNLLSGQ----IPSAIGKLFNLKYLDLSKNKLGGS----IPTEIGNCS 245 (350)
Q Consensus 175 L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~i~~~----~~~~~~~~~ 245 (350)
..+ ...++|++|++++|.++.. ++..+...++|++|+|++|.+++. +...+...+
T Consensus 148 ----------------~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~ 211 (372)
T 3un9_A 148 ----------------DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR 211 (372)
T ss_dssp ----------------HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS
T ss_pred ----------------HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC
Confidence 001 1233455555555544321 222234445555555555555432 122333444
Q ss_pred CCCEEECCCCcCcccC----chhhcccCCCCEEEccccccccccCCcc
Q 018826 246 ELKNLTLNHNSLDGTI----RPEMGEILLLQNLDLSHNNLSGTITKTL 289 (350)
Q Consensus 246 ~L~~L~l~~n~i~~~~----~~~~~~~~~L~~L~l~~N~i~~~~p~~~ 289 (350)
+|++|++++|.|+... ...+...++|++|++++|.|++.....+
T Consensus 212 ~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp CCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred CcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 5555555555554321 1222334555555555555554444333
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=2.4e-12 Score=102.62 Aligned_cols=107 Identities=26% Similarity=0.321 Sum_probs=91.4
Q ss_pred ccEEecCCCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccC
Q 018826 151 LLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSK 230 (350)
Q Consensus 151 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 230 (350)
-+.++++++.+. .+|..+. ++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..|..+++|++|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 367888888875 5555443 7899999999999988888899999999999999999977677788999999999999
Q ss_pred CcccccCCccccCCCCCCEEECCCCcCccc
Q 018826 231 NKLGGSIPTEIGNCSELKNLTLNHNSLDGT 260 (350)
Q Consensus 231 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~ 260 (350)
|.+++..+..+..+++|+.|++++|.+...
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 999966666688999999999999999854
No 148
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.38 E-value=1.1e-10 Score=105.08 Aligned_cols=121 Identities=11% Similarity=0.147 Sum_probs=78.0
Q ss_pred ccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccCCcccccCCccccCCCC
Q 018826 167 LEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSE 246 (350)
Q Consensus 167 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ 246 (350)
..+..+..++.+.+..+ +......++..+..|+.+.+..+ ++.+...+|..+.+|+.+.+..+ +......+|.+|++
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccc
Confidence 34555667777777554 33345556677777777777665 44455566777777777777654 43355566777777
Q ss_pred CCEEECCCCcCcccCchhhcccCCCCEEEccccccccccCCcccc
Q 018826 247 LKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTITKTLCP 291 (350)
Q Consensus 247 L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p~~~~~ 291 (350)
|+.+.+.++.++.....+|.++.+|+.+++..+ ++......|..
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~ 331 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKN 331 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhC
Confidence 777777777777666667777777777777654 55444444443
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.37 E-value=4.5e-14 Score=126.40 Aligned_cols=160 Identities=19% Similarity=0.167 Sum_probs=96.7
Q ss_pred CCCCcEEecccccccCCCCcccc-----CCCCCcEEEccCCccccccCccc-cCCCCCCEEEcccCccccccchhhh---
Q 018826 76 LKSLIRLFVRNNTLGGPIPSTLF-----RLTNLEVLYLGFNQFNGTIPREI-GHLKNLTYLFIKVNKLTGAIRSTLG--- 146 (350)
Q Consensus 76 l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~~~--- 146 (350)
++.|++|++++|.++......+. ..++|++|++++|.+.......+ ..+++|++|++++|.+.......+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46899999999998754333332 23699999999999875433333 2356899999999998765444442
Q ss_pred --ccCCccEEecCCCccccC----ccccccCCCCCCEEEccCCcccccC----CcccCCCCCCCEEECCCCcCccc----
Q 018826 147 --QLTSLLQLDLSSNQLHSS----IPLEIGNLSALEELDLSDNKIHGII----PDELTKLSQLKNLNISSNLLSGQ---- 212 (350)
Q Consensus 147 --~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~~~~~---- 212 (350)
..++|+.|++++|.+.+. +...+...++|+.|++++|.+++.. ...+...++|+.|++++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 346677777777776532 2233345566666666666665322 23334445566666666555432
Q ss_pred cchhhhCCCCCCEEEccCCcccc
Q 018826 213 IPSAIGKLFNLKYLDLSKNKLGG 235 (350)
Q Consensus 213 ~~~~~~~~~~L~~L~l~~n~i~~ 235 (350)
++..+...++|++|++++|.|++
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHhCCCCCEEeccCCCCCH
Confidence 22223334555555555555543
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.25 E-value=3e-11 Score=107.34 Aligned_cols=104 Identities=26% Similarity=0.271 Sum_probs=72.4
Q ss_pred EEecCCC-ccccCccccccCCCCCCEEEccC-CcccccCCcccCCCCCCCEEECCCCcCccccchhhhCCCCCCEEEccC
Q 018826 153 QLDLSSN-QLHSSIPLEIGNLSALEELDLSD-NKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSK 230 (350)
Q Consensus 153 ~L~l~~n-~~~~~~~~~l~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 230 (350)
.++++++ .+. .+|. +....+|+.|++++ |.+++..+..|..+++|+.|+|++|.+++..+..|..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566666 565 4555 77777777777775 777766666777777777777777777777677777777777777777
Q ss_pred CcccccCCccccCCCCCCEEECCCCcCcc
Q 018826 231 NKLGGSIPTEIGNCSELKNLTLNHNSLDG 259 (350)
Q Consensus 231 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~ 259 (350)
|++++..+..+..++ |+.|++.+|.+..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 777754444554444 7777777777763
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.18 E-value=1.3e-10 Score=103.11 Aligned_cols=102 Identities=24% Similarity=0.237 Sum_probs=56.4
Q ss_pred EEcccC-ccccccchhhhccCCccEEecCC-CccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCC
Q 018826 130 LFIKVN-KLTGAIRSTLGQLTSLLQLDLSS-NQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSN 207 (350)
Q Consensus 130 L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 207 (350)
++.+++ .+..+. . +..+.+|+.|+|++ |.+.+..+..|..+++|+.|+|++|.+++..+..|..+++|+.|+|++|
T Consensus 13 v~~~~~n~l~~ip-~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLH-H-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTT-T-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccC-C-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 444444 444332 2 55555566666654 5555444455556666666666666666555555566666666666666
Q ss_pred cCccccchhhhCCCCCCEEEccCCccc
Q 018826 208 LLSGQIPSAIGKLFNLKYLDLSKNKLG 234 (350)
Q Consensus 208 ~~~~~~~~~~~~~~~L~~L~l~~n~i~ 234 (350)
.+++..+..+..++ |+.|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 66544444444433 666666666554
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.18 E-value=3.1e-09 Score=95.39 Aligned_cols=266 Identities=12% Similarity=0.047 Sum_probs=180.9
Q ss_pred CCcceecCCcccCCCCCcCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEecccccccCCC
Q 018826 14 YTENTCTIPKEIGSLRNLEVLDLVSNNLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRNNTLGGPI 93 (350)
Q Consensus 14 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 93 (350)
...++.--..+|.+|.+|+.+++..+ ++.+...+|.++ +|+.+.+..+ +......+|..+ +|+.+.+..+. ....
T Consensus 54 p~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp~~~-~~i~ 128 (379)
T 4h09_A 54 NSGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEFPGAT-TEIG 128 (379)
T ss_dssp CTTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEECCTTC-CEEC
T ss_pred CCCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccCCCcc-cccc
Confidence 34455555668999999999999654 665667788887 6888877643 443444556554 78888887642 2233
Q ss_pred CccccCCCCCcEEEccCCccccccCccccCCCCCCEEEcccCc-----------------------------------cc
Q 018826 94 PSTLFRLTNLEVLYLGFNQFNGTIPREIGHLKNLTYLFIKVNK-----------------------------------LT 138 (350)
Q Consensus 94 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-----------------------------------~~ 138 (350)
..+|.+. +++.+.+..+ ++......+..+..++.+.+.... ..
T Consensus 129 ~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (379)
T 4h09_A 129 NYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVK 206 (379)
T ss_dssp TTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCC
T ss_pred ccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccccccccccccccee
Confidence 3444443 4555544432 222333444445555444433211 11
Q ss_pred cccchhhhccCCccEEecCCCccccCccccccCCCCCCEEEccCCcccccCCcccCCCCCCCEEECCCCcCccccchhhh
Q 018826 139 GAIRSTLGQLTSLLQLDLSSNQLHSSIPLEIGNLSALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNLLSGQIPSAIG 218 (350)
Q Consensus 139 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 218 (350)
......+..+.+++.+.+..+ +......++..+..|+.+.+..+ ++.+...++..+.+|+.+.+..+ +......+|.
T Consensus 207 ~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~ 283 (379)
T 4h09_A 207 TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCS 283 (379)
T ss_dssp EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTT
T ss_pred EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccc
Confidence 122344556678888888654 33355667888999999999875 56577778899999999999765 5546667899
Q ss_pred CCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEccccccccccCCcccc
Q 018826 219 KLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLSGTITKTLCP 291 (350)
Q Consensus 219 ~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~~~~p~~~~~ 291 (350)
.+++|+.+.+.++.++.....+|.+|.+|+.+.+..+ ++.....+|.++.+|+.+.+..+ ++.....+|..
T Consensus 284 ~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~ 354 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEG 354 (379)
T ss_dssp TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred cccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhC
Confidence 9999999999999888677789999999999999765 66566778999999999999765 65555555543
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.92 E-value=1e-09 Score=97.48 Aligned_cols=84 Identities=18% Similarity=0.353 Sum_probs=54.4
Q ss_pred CCCCCCEEEccCCcccccCCccc---CCCCCCCEEECCCCcCcccc----chhhhCCCCCCEEEccCCcccccCCccccC
Q 018826 171 NLSALEELDLSDNKIHGIIPDEL---TKLSQLKNLNISSNLLSGQI----PSAIGKLFNLKYLDLSKNKLGGSIPTEIGN 243 (350)
Q Consensus 171 ~~~~L~~L~l~~n~~~~~~~~~~---~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 243 (350)
.+++|+.|++.+|.+.+..+..+ ..+++|+.|+++.|.+.+.. +..+..+++|+.|++++|.+++.....+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 46788888888777654322222 24678888888888877532 223345688899999888887544444432
Q ss_pred -CCCCCEEECCCCc
Q 018826 244 -CSELKNLTLNHNS 256 (350)
Q Consensus 244 -~~~L~~L~l~~n~ 256 (350)
+ ...++++.++
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 2 3567888776
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.92 E-value=1.4e-09 Score=96.56 Aligned_cols=85 Identities=20% Similarity=0.239 Sum_probs=61.3
Q ss_pred CCCCCCEEECCCCcCccccchhhh---CCCCCCEEEccCCcccccC----CccccCCCCCCEEECCCCcCcccCchhhcc
Q 018826 195 KLSQLKNLNISSNLLSGQIPSAIG---KLFNLKYLDLSKNKLGGSI----PTEIGNCSELKNLTLNHNSLDGTIRPEMGE 267 (350)
Q Consensus 195 ~~~~L~~L~l~~n~~~~~~~~~~~---~~~~L~~L~l~~n~i~~~~----~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 267 (350)
.+++|+.|.+.+|.+.+..+..+. .+++|++|+|+.|.+++.. +..+..+++|+.|++++|.++......+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 478999999999988754333332 5789999999999998643 233345799999999999987554444432
Q ss_pred cCCCCEEEccccc
Q 018826 268 ILLLQNLDLSHNN 280 (350)
Q Consensus 268 ~~~L~~L~l~~N~ 280 (350)
.- ...+++++++
T Consensus 330 al-g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL-PMKIDVSDSQ 341 (362)
T ss_dssp HC-CSEEECCSBC
T ss_pred Hc-CCEEEecCCc
Confidence 11 3678998887
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.69 E-value=7.8e-09 Score=82.93 Aligned_cols=116 Identities=16% Similarity=0.198 Sum_probs=72.6
Q ss_pred cccCCCCCCEEEccCC-ccccc----CCcccCCCCCCCEEECCCCcCccc----cchhhhCCCCCCEEEccCCccccc--
Q 018826 168 EIGNLSALEELDLSDN-KIHGI----IPDELTKLSQLKNLNISSNLLSGQ----IPSAIGKLFNLKYLDLSKNKLGGS-- 236 (350)
Q Consensus 168 ~l~~~~~L~~L~l~~n-~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~i~~~-- 236 (350)
.+...+.|++|++++| .+... ....+...++|++|++++|.+... +...+...++|++|+|++|.|++.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 4445556666666666 55432 223344556677777777776532 233445567788888888877753
Q ss_pred --CCccccCCCCCCEEEC--CCCcCcccC----chhhcccCCCCEEEcccccccc
Q 018826 237 --IPTEIGNCSELKNLTL--NHNSLDGTI----RPEMGEILLLQNLDLSHNNLSG 283 (350)
Q Consensus 237 --~~~~~~~~~~L~~L~l--~~n~i~~~~----~~~~~~~~~L~~L~l~~N~i~~ 283 (350)
+...+...++|++|++ ++|.|.... ...+...++|+.|++++|.++.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 3445566677888888 778886432 2344556788888888887764
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.53 E-value=1.8e-08 Score=80.81 Aligned_cols=114 Identities=16% Similarity=0.245 Sum_probs=65.5
Q ss_pred hhccCCccEEecCCC-ccccC----ccccccCCCCCCEEEccCCcccccC----CcccCCCCCCCEEECCCCcCccc---
Q 018826 145 LGQLTSLLQLDLSSN-QLHSS----IPLEIGNLSALEELDLSDNKIHGII----PDELTKLSQLKNLNISSNLLSGQ--- 212 (350)
Q Consensus 145 ~~~~~~L~~L~l~~n-~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~~~~~--- 212 (350)
+...++|+.|++++| .+.+. +...+...+.|+.|++++|.+.+.. ...+...++|++|++++|.+...
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 334445555555554 44321 2233444556666666666654321 22334446677777777777643
Q ss_pred -cchhhhCCCCCCEEEc--cCCccccc----CCccccCCCCCCEEECCCCcCc
Q 018826 213 -IPSAIGKLFNLKYLDL--SKNKLGGS----IPTEIGNCSELKNLTLNHNSLD 258 (350)
Q Consensus 213 -~~~~~~~~~~L~~L~l--~~n~i~~~----~~~~~~~~~~L~~L~l~~n~i~ 258 (350)
+...+...++|++|++ ++|.+++. +...+...++|++|++++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3445566677888888 67777643 2234445577888888888775
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.32 E-value=1.9e-07 Score=73.28 Aligned_cols=84 Identities=13% Similarity=0.158 Sum_probs=52.0
Q ss_pred CCCCEEEccCCcccccCCcccCCCCCCCEEECCCCc-CccccchhhhCC----CCCCEEEccCCc-ccccCCccccCCCC
Q 018826 173 SALEELDLSDNKIHGIIPDELTKLSQLKNLNISSNL-LSGQIPSAIGKL----FNLKYLDLSKNK-LGGSIPTEIGNCSE 246 (350)
Q Consensus 173 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~----~~L~~L~l~~n~-i~~~~~~~~~~~~~ 246 (350)
-.|+.|++++|.+++.....+..+++|++|+|++|. +++..-..+... ++|++|++++|. +++.....+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 357777777777665555556667777777777763 554433344442 357777777764 66544445556677
Q ss_pred CCEEECCCCc
Q 018826 247 LKNLTLNHNS 256 (350)
Q Consensus 247 L~~L~l~~n~ 256 (350)
|+.|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777764
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.29 E-value=1.2e-06 Score=73.98 Aligned_cols=80 Identities=35% Similarity=0.365 Sum_probs=46.9
Q ss_pred CCCCCCEEECCCCcCccc--cchhhhCCCCCCEEEccCCccccc-CCccccCCCCCCEEECCCCcCcccCc-------hh
Q 018826 195 KLSQLKNLNISSNLLSGQ--IPSAIGKLFNLKYLDLSKNKLGGS-IPTEIGNCSELKNLTLNHNSLDGTIR-------PE 264 (350)
Q Consensus 195 ~~~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~i~~~~~-------~~ 264 (350)
.+++|+.|+|++|.+++. ++..+..+++|+.|+|++|.|++. ....+..+ +|++|++++|.+.+..+ ..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence 456677777777776652 334555667777777777777643 11222223 67777777777764333 23
Q ss_pred hcccCCCCEEE
Q 018826 265 MGEILLLQNLD 275 (350)
Q Consensus 265 ~~~~~~L~~L~ 275 (350)
+..+|+|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 45566666665
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.28 E-value=2.8e-07 Score=72.29 Aligned_cols=87 Identities=8% Similarity=0.057 Sum_probs=60.5
Q ss_pred CCCCEEECCCCcCccccchhhhCCCCCCEEEccCCc-ccccCCccccCC----CCCCEEECCCCc-CcccCchhhcccCC
Q 018826 197 SQLKNLNISSNLLSGQIPSAIGKLFNLKYLDLSKNK-LGGSIPTEIGNC----SELKNLTLNHNS-LDGTIRPEMGEILL 270 (350)
Q Consensus 197 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~----~~L~~L~l~~n~-i~~~~~~~~~~~~~ 270 (350)
..|++|+++++.++...-..+..+++|++|+|++|. +++.....+..+ ++|++|++++|. |+...-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 467888888887776555666778888888888875 665444445443 468888888874 77555556667788
Q ss_pred CCEEEcccc-cccc
Q 018826 271 LQNLDLSHN-NLSG 283 (350)
Q Consensus 271 L~~L~l~~N-~i~~ 283 (350)
|+.|+++++ .+++
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 888888887 3553
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.17 E-value=1.2e-06 Score=73.98 Aligned_cols=67 Identities=30% Similarity=0.369 Sum_probs=55.3
Q ss_pred hCCCCCCEEEccCCcccc--cCCccccCCCCCCEEECCCCcCcccCchhhcccC--CCCEEEccccccccccC
Q 018826 218 GKLFNLKYLDLSKNKLGG--SIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEIL--LLQNLDLSHNNLSGTIT 286 (350)
Q Consensus 218 ~~~~~L~~L~l~~n~i~~--~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~--~L~~L~l~~N~i~~~~p 286 (350)
..+++|+.|+|++|.+++ .++..+..+++|+.|+|++|+|++. ..+..+. +|++|++++|.+.+..|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 568999999999999996 3445566799999999999999965 3344444 89999999999987666
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.69 E-value=3.1e-05 Score=61.79 Aligned_cols=113 Identities=11% Similarity=0.183 Sum_probs=64.5
Q ss_pred cCCCCCCEEEccCC-ccccc----CCcccCCCCCCCEEECCCCcCccc----cchhhhCCCCCCEEEccCCccccc----
Q 018826 170 GNLSALEELDLSDN-KIHGI----IPDELTKLSQLKNLNISSNLLSGQ----IPSAIGKLFNLKYLDLSKNKLGGS---- 236 (350)
Q Consensus 170 ~~~~~L~~L~l~~n-~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~i~~~---- 236 (350)
...+.|+.|+++++ .+.+. ..+.+..-..|+.|+|++|.+.+. +...+..-+.|+.|+|++|.|++.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34455555666553 44321 223344455666777777666532 334445566777777777777643
Q ss_pred CCccccCCCCCCEEECCCC---cCcc----cCchhhcccCCCCEEEccccccc
Q 018826 237 IPTEIGNCSELKNLTLNHN---SLDG----TIRPEMGEILLLQNLDLSHNNLS 282 (350)
Q Consensus 237 ~~~~~~~~~~L~~L~l~~n---~i~~----~~~~~~~~~~~L~~L~l~~N~i~ 282 (350)
+..++..-..|++|++++| .+.. .+...+...++|+.|+++.|.+.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 2234455567788888754 3332 12344566678888888777654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.36 E-value=8.6e-05 Score=59.25 Aligned_cols=111 Identities=16% Similarity=0.217 Sum_probs=60.7
Q ss_pred ccCCccEEecCCC-cccc----CccccccCCCCCCEEEccCCcccccCCc----ccCCCCCCCEEECCCCcCccc----c
Q 018826 147 QLTSLLQLDLSSN-QLHS----SIPLEIGNLSALEELDLSDNKIHGIIPD----ELTKLSQLKNLNISSNLLSGQ----I 213 (350)
Q Consensus 147 ~~~~L~~L~l~~n-~~~~----~~~~~l~~~~~L~~L~l~~n~~~~~~~~----~~~~~~~L~~L~l~~n~~~~~----~ 213 (350)
.-+.|+.|+++++ .+.+ .+...+.....|+.|++++|.+.+.... .+..-+.|++|+|++|.+... +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3445566666553 4332 1334455556667777777666543222 233445677777777776643 2
Q ss_pred chhhhCCCCCCEEEccCC---ccccc----CCccccCCCCCCEEECCCCcC
Q 018826 214 PSAIGKLFNLKYLDLSKN---KLGGS----IPTEIGNCSELKNLTLNHNSL 257 (350)
Q Consensus 214 ~~~~~~~~~L~~L~l~~n---~i~~~----~~~~~~~~~~L~~L~l~~n~i 257 (350)
...+...+.|+.|+|+++ .+.+. +...+..-+.|+.|+++.|.+
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 334455566777777654 33321 223344457777777776654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.09 E-value=0.0015 Score=48.51 Aligned_cols=37 Identities=22% Similarity=0.225 Sum_probs=19.1
Q ss_pred CCCEEEccCCcccccCCccccCCCCCCEEECCCCcCc
Q 018826 222 NLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNHNSLD 258 (350)
Q Consensus 222 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~ 258 (350)
+|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555555555444444455555555555555443
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.54 E-value=0.0046 Score=45.80 Aligned_cols=56 Identities=21% Similarity=0.280 Sum_probs=35.0
Q ss_pred EEEccCCccc-ccCCccccCCCCCCEEECCCCcCcccCchhhcccCCCCEEEccccccc
Q 018826 225 YLDLSKNKLG-GSIPTEIGNCSELKNLTLNHNSLDGTIRPEMGEILLLQNLDLSHNNLS 282 (350)
Q Consensus 225 ~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~N~i~ 282 (350)
.++.+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5566666654 23443332 46777777777777666666667777777777777653
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=85.99 E-value=2.4 Score=29.28 Aligned_cols=46 Identities=9% Similarity=0.036 Sum_probs=23.8
Q ss_pred cCCCCCCcccCCCCCCCEEEccCCcCCCCcchhccCCCCCcEEeccc
Q 018826 40 NLNGTIPKEIGTLRNLMGLHLSSNNLTGELPQEIENLKSLIRLFVRN 86 (350)
Q Consensus 40 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~ 86 (350)
.++.+...+|.+|..|+.+.+..+ ++.+...+|.+|.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344444455555666666665442 3334444555566665555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=84.59 E-value=1.2 Score=30.81 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=18.5
Q ss_pred ccchhhhCCCCCCEEEccCCcccccCCccccCCCCCCEEECCC
Q 018826 212 QIPSAIGKLFNLKYLDLSKNKLGGSIPTEIGNCSELKNLTLNH 254 (350)
Q Consensus 212 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~ 254 (350)
+...+|.+|.+|+.+.+..+- +.+...+|.+|.+|+.+.+.+
T Consensus 11 I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECC
T ss_pred ecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcC
Confidence 333444444455555444332 223334444455555444443
Done!