BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018827
(350 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FNY2|DPB_ARATH Transcription factor-like protein DPB OS=Arabidopsis thaliana
GN=DPB PE=1 SV=1
Length = 385
Score = 459 bits (1182), Expect = e-129, Method: Compositional matrix adjust.
Identities = 251/367 (68%), Positives = 276/367 (75%), Gaps = 44/367 (11%)
Query: 24 ATRSWGTTVSGQSVSTSGSVGSPSQ------SMATPASDSTFLRLNHLDIHGDDAGSQGA 77
+TRSWGT VSGQSVSTSGS+GSPS ++ T SD+TF RLN+LDI GDDAGSQGA
Sbjct: 23 STRSWGTAVSGQSVSTSGSMGSPSSRSEQTITVVTSTSDTTFQRLNNLDIQGDDAGSQGA 82
Query: 78 VVGGKKKKRGQRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSL 137
G KKKKRGQRA G DK+GRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFA P+N
Sbjct: 83 -SGVKKKKRGQRAAGPDKTGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFALPNNDG 141
Query: 138 ATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGL 197
+PDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQW+GLPRTSL+DIEELK ERL L
Sbjct: 142 TSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWRGLPRTSLSDIEELKNERLSL 201
Query: 198 RNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFILVQTRPHATVEVE 257
RNRIEKKTAY QELE+Q+VGLQNLIQRNE LYSSGNAPSGGVALPFILVQTRPHATVEVE
Sbjct: 202 RNRIEKKTAYSQELEEQYVGLQNLIQRNEHLYSSGNAPSGGVALPFILVQTRPHATVEVE 261
Query: 258 ISEDMQLVHFDFNSTPFKLHDDNSVLKAMKFCE--------RQQSDDMAQSF-PADDGEG 308
ISEDMQLVHFDFNSTPF+LHDDN VLK MKFC+ R S + +F P + +G
Sbjct: 262 ISEDMQLVHFDFNSTPFELHDDNFVLKTMKFCDQPPQQPNGRNNSQLVCHNFTPENPNKG 321
Query: 309 SSMAGVYQPPQL--------------------LPPPRANN-----SNRPPTSPPVPGILK 343
S PQL +P P NN P SP +PGI+
Sbjct: 322 PSTGPT---PQLDMYETHLQSQQHQQHSQLQIIPMPETNNVTSSADTAPVKSPSLPGIMN 378
Query: 344 ARVKHEH 350
+ +K E+
Sbjct: 379 SSMKPEN 385
>sp|Q9FNY3|DPA_ARATH Transcription factor-like protein DPA OS=Arabidopsis thaliana
GN=DPA PE=1 SV=1
Length = 292
Score = 234 bits (598), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 109/210 (51%), Positives = 154/210 (73%), Gaps = 7/210 (3%)
Query: 79 VGGKKKKRGQRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLA 138
+G +KK + + +GGG LRQFS+ VC+K+E+K TTY EVADE++++FA +
Sbjct: 39 IGSEKKGQSRTSGGG------LRQFSVMVCQKLEAKKITTYKEVADEIISDFATIKQNAE 92
Query: 139 TP-DQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGL 197
P ++ +Y+EKNIRRRVYDALNV MA+DII++DKKEI+WKGLP T D+EE+K +R +
Sbjct: 93 KPLNENEYNEKNIRRRVYDALNVFMALDIIARDKKEIRWKGLPITCKKDVEEVKMDRNKV 152
Query: 198 RNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFILVQTRPHATVEVE 257
+ ++KK A+L+EL ++ L++L+ RN+ + P+ G LPFIL++T PHA VE+E
Sbjct: 153 MSSVQKKAAFLKELREKVSSLESLMSRNQEMVVKTQGPAEGFTLPFILLETNPHAVVEIE 212
Query: 258 ISEDMQLVHFDFNSTPFKLHDDNSVLKAMK 287
ISEDMQLVH DFNSTPF +HDD +LK M+
Sbjct: 213 ISEDMQLVHLDFNSTPFSVHDDAYILKLMQ 242
>sp|Q14186|TFDP1_HUMAN Transcription factor Dp-1 OS=Homo sapiens GN=TFDP1 PE=1 SV=1
Length = 410
Score = 199 bits (506), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 105/203 (51%), Positives = 139/203 (68%), Gaps = 5/203 (2%)
Query: 87 GQRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYD 146
G+R G+K+G+GLR FSMKVCEKV+ KG T+YNEVADELVAEF+ N + P++ YD
Sbjct: 103 GKRNRKGEKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVAEFSAADNHI-LPNESAYD 161
Query: 147 EKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTA 206
+KNIRRRVYDALNVLMAM+IISK+KKEI+W GLP S + + L+ ER RI++K +
Sbjct: 162 QKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEVERQRRLERIKQKQS 221
Query: 207 YLQELEDQFVGLQNLIQRN---ERLYSSGNAPSGGVALPFILVQTRPHATVEVEISEDMQ 263
LQEL Q + +NL+QRN E+ S P+ + LPFI+V T ++ IS D
Sbjct: 222 QLQELILQQIAFKNLVQRNRHAEQQASRPPPPNSVIHLPFIIVNTSKKTVIDCSISNDKF 281
Query: 264 LVHFDFNSTPFKLHDDNSVLKAM 286
F+F++T F++HDD VLK M
Sbjct: 282 EYLFNFDNT-FEIHDDIEVLKRM 303
>sp|Q17QZ4|TFDP1_BOVIN Transcription factor Dp-1 OS=Bos taurus GN=TFDP1 PE=2 SV=1
Length = 410
Score = 197 bits (502), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 103/203 (50%), Positives = 139/203 (68%), Gaps = 5/203 (2%)
Query: 87 GQRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYD 146
G+R G+K+G+GLR FSMKVCEKV+ KG T+YNEVADELVAEF+ ++S P + YD
Sbjct: 103 GKRNRKGEKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVAEFS-AADSHILPSESAYD 161
Query: 147 EKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTA 206
+KNIRRRVYDALNVLMAM+IISK+KKEI+W GLP S + + L+ ER RI++K +
Sbjct: 162 QKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQSLEVERQRRLERIKQKQS 221
Query: 207 YLQELEDQFVGLQNLIQRNERLYSSGN---APSGGVALPFILVQTRPHATVEVEISEDMQ 263
LQEL Q + +NL+QRN ++ + P+ + LPFI+V T ++ IS D
Sbjct: 222 QLQELILQQIAFKNLVQRNRQVEQQASRPPPPNSVIHLPFIIVNTSKKTVIDCSISNDKF 281
Query: 264 LVHFDFNSTPFKLHDDNSVLKAM 286
F+F++T F++HDD VLK M
Sbjct: 282 EYLFNFDNT-FEIHDDIEVLKRM 303
>sp|Q08639|TFDP1_MOUSE Transcription factor Dp-1 OS=Mus musculus GN=Tfdp1 PE=1 SV=1
Length = 410
Score = 197 bits (501), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 103/203 (50%), Positives = 137/203 (67%), Gaps = 5/203 (2%)
Query: 87 GQRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYD 146
G+R G+K+G+GLR FSMKVCEKV+ KG T+YNEVADELVAEF+ N + P++ YD
Sbjct: 103 GKRNRKGEKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVAEFSAADNHI-LPNESAYD 161
Query: 147 EKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTA 206
+KNIRRRVYDALNVLMAM+IISK+KKEI+W GLP S + + L+ ER RI++K +
Sbjct: 162 QKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEVERQRRLERIKQKQS 221
Query: 207 YLQELEDQFVGLQNLIQRNERLYSSGN---APSGGVALPFILVQTRPHATVEVEISEDMQ 263
LQEL Q + +NL+QRN + P+ + LPFI+V T ++ IS D
Sbjct: 222 QLQELILQQIAFKNLVQRNRQAEQQARRPPPPNSVIHLPFIIVNTSRKTVIDCSISNDKF 281
Query: 264 LVHFDFNSTPFKLHDDNSVLKAM 286
F+F++T F++HDD VLK M
Sbjct: 282 EYLFNFDNT-FEIHDDIEVLKRM 303
>sp|Q14188|TFDP2_HUMAN Transcription factor Dp-2 OS=Homo sapiens GN=TFDP2 PE=1 SV=2
Length = 446
Score = 189 bits (480), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 120/266 (45%), Positives = 162/266 (60%), Gaps = 29/266 (10%)
Query: 35 QSVSTSGSV--GSPSQSMATPASDSTFLRLNHLDIHGDDAGSQGAVVGGKKKKR------ 86
Q +++SGSV GSP TPA + H+ A + G V G +K+ R
Sbjct: 68 QRLTSSGSVLIGSP----YTPAP--AMVTQTHI------AEATGWVPGDRKRARKFIDSD 115
Query: 87 ---GQRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQ 143
+R+ GDK+G+GLR FSMKVCEKV+ KG T+YNEVADELV+EF + +N LA
Sbjct: 116 FSESKRSKKGDKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAA--DS 173
Query: 144 QYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEK 203
YD+KNIRRRVYDALNVLMAM+IISK+KKEI+W GLP S + + L+ E+ RI++
Sbjct: 174 AYDQKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEIEKQRRIERIKQ 233
Query: 204 KTAYLQELEDQFVGLQNLIQRNERLYSSGNAP---SGGVALPFILVQTRPHATVEVEISE 260
K A LQEL Q + +NL+QRN + P + + LPFI++ T ++ IS
Sbjct: 234 KRAQLQELLLQQIAFKNLVQRNRQNEQQNQGPPALNSTIQLPFIIINTSRKTVIDCSISS 293
Query: 261 DMQLVHFDFNSTPFKLHDDNSVLKAM 286
D F+F++T F++HDD VLK M
Sbjct: 294 DKFEYLFNFDNT-FEIHDDIEVLKRM 318
>sp|Q24318|TFDP_DROME Transcription factor Dp OS=Drosophila melanogaster GN=Dp PE=1 SV=2
Length = 445
Score = 180 bits (457), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 99/203 (48%), Positives = 128/203 (63%), Gaps = 8/203 (3%)
Query: 88 QRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDE 147
QR DK+G+GLR FSMKVCEKVE KG+TTYNEVAD+LV+E + N+ D+
Sbjct: 158 QRKRKPDKAGKGLRHFSMKVCEKVEEKGKTTYNEVADDLVSE--EMKNNAY---DNNCDQ 212
Query: 148 KNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAY 207
KNIRRRVYDALNVLMA+++ISKDKKEI+W GLP S L+ E R RI++K
Sbjct: 213 KNIRRRVYDALNVLMAINVISKDKKEIRWIGLPANSTETFLALEEENCQRRERIKQKNEM 272
Query: 208 LQELEDQFVGLQNLIQRNERLYSSGNAPS--GGVALPFILVQTRPHATVEVEISEDMQLV 265
L+E+ Q V + L++RN+R S G PS + LPFI+V T + ++ D
Sbjct: 273 LREMIMQHVAFKGLVERNKRNESQGVVPSPNASIQLPFIIVNTHKSTKINCSVTNDKSEY 332
Query: 266 HFDFNSTPFKLHDDNSVLKAMKF 288
F F+ T F++HDD VLK M F
Sbjct: 333 IFKFDKT-FEMHDDIEVLKRMGF 354
>sp|Q5H9I0|TFDP3_HUMAN Transcription factor Dp family member 3 OS=Homo sapiens GN=TFDP3
PE=1 SV=1
Length = 405
Score = 159 bits (403), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/203 (42%), Positives = 125/203 (61%), Gaps = 5/203 (2%)
Query: 87 GQRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYD 146
GQ G+K+G GL + SMKV E V+ KG T+ EV ELVA+F SN A+P++ YD
Sbjct: 98 GQHNRKGEKNGMGLCRLSMKVWETVQRKGTTSCQEVVGELVAKFRAASNH-ASPNESAYD 156
Query: 147 EKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTA 206
KNI+RR YDALNVLMAM+IIS++KK+I+W GL S + + L+ ER RI++K +
Sbjct: 157 VKNIKRRTYDALNVLMAMNIISREKKKIKWIGLTTNSAQNCQNLRVERQKRLERIKQKQS 216
Query: 207 YLQELEDQFVGLQNLIQRNERL---YSSGNAPSGGVALPFILVQTRPHATVEVEISEDMQ 263
LQ+L Q + +NL+ RN+ + S P+ + +PFI++ + + IS+D
Sbjct: 217 ELQQLILQQIAFKNLVLRNQYVEEQVSQRPLPNSVIHVPFIIISSSKKTVINCSISDDKS 276
Query: 264 LVHFDFNSTPFKLHDDNSVLKAM 286
F FNS+ F++HDD VL M
Sbjct: 277 EYLFKFNSS-FEIHDDTEVLMWM 298
>sp|Q22703|TFDP1_CAEEL Transcription factor dpl-1 OS=Caenorhabditis elegans GN=dpl-1 PE=1
SV=2
Length = 598
Score = 158 bits (399), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 88/206 (42%), Positives = 124/206 (60%), Gaps = 7/206 (3%)
Query: 99 GLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPD--QQQYDEKNIRRRVYD 156
GLR FS KVCEKV+ KG T YNEVADELVA++ +N + D +Q+YD KNIRRRVYD
Sbjct: 72 GLRHFSTKVCEKVKEKGLTNYNEVADELVADYFQ-NNLIKQIDVVKQEYDMKNIRRRVYD 130
Query: 157 ALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFV 216
ALNVL+AM+II+K KK+I+W GLP ++ +I L+ E+ I K L+E+ Q V
Sbjct: 131 ALNVLLAMNIITKSKKDIRWIGLPASASQEISRLEEEKSRREASISSKKQALEEMVLQIV 190
Query: 217 GLQNLIQRNERLYSSGNAPSGGVA--LPFILVQTRPHATVEVEISEDMQLVHFDFNSTPF 274
+NL++RN + P LPF+++ T A VE +S D F F+ F
Sbjct: 191 SYKNLVERNRKNEHKNGRPENDTVLHLPFLIINTDKEANVECSVSSDKSEFLFSFDKK-F 249
Query: 275 KLHDDNSVLKAMKF-CERQQSDDMAQ 299
++HDD +LK + C + ++ A+
Sbjct: 250 EIHDDFEILKKLNLACSLETTNPTAE 275
>sp|Q64163|TFDP2_MOUSE Transcription factor Dp-2 OS=Mus musculus GN=Tfdp2 PE=1 SV=2
Length = 446
Score = 156 bits (394), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 92/202 (45%), Positives = 127/202 (62%), Gaps = 6/202 (2%)
Query: 88 QRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDE 147
+R+ GDK+G+GLR FSMKVCEKV+ KG T+YNEVADELV+EF + +N LA YD+
Sbjct: 120 KRSKKGDKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAA--DSAYDQ 177
Query: 148 KNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAY 207
+NIRRRVYDALNVLMAM+IIS + + S + + L+ E+ RI++K A
Sbjct: 178 ENIRRRVYDALNVLMAMNIISSLPTGKKRNQVDCNSAQECQNLEIEKQRRIERIKQKRAQ 237
Query: 208 LQELEDQFVGLQNLIQRNERLYSSGNAP---SGGVALPFILVQTRPHATVEVEISEDMQL 264
LQEL Q + +NL+QRN + P + + LPFI++ T ++ IS D
Sbjct: 238 LQELLLQQIAFKNLVQRNRQNEQQNQGPPAVNSTIQLPFIIINTSRKTVIDCSISSDKFE 297
Query: 265 VHFDFNSTPFKLHDDNSVLKAM 286
F+F++T F++HDD VLK M
Sbjct: 298 YLFNFDNT-FEIHDDIEVLKRM 318
>sp|Q96AV8|E2F7_HUMAN Transcription factor E2F7 OS=Homo sapiens GN=E2F7 PE=1 SV=3
Length = 911
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 10/70 (14%)
Query: 151 RRRVYDALNVLMAMDIISK-DKKEIQWKG---LPRTSLNDIEELKAERLGLRNRIEKKTA 206
RRR+YD +NVL ++ ++S+ K + W G LP+T N +RLG + E++ A
Sbjct: 183 RRRIYDIVNVLESLHLVSRVAKNQYGWHGRHSLPKTLRN------LQRLGEEQKYEEQMA 236
Query: 207 YLQELEDQFV 216
YLQ+ E +
Sbjct: 237 YLQQKELDLI 246
>sp|E1BE02|E2F7_BOVIN Transcription factor E2F7 OS=Bos taurus GN=E2F7 PE=3 SV=1
Length = 911
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 10/66 (15%)
Query: 151 RRRVYDALNVLMAMDIISK-DKKEIQWKG---LPRTSLNDIEELKAERLGLRNRIEKKTA 206
RRR+YD +NVL ++ ++S+ K + W G LP+T N +RLG + + E++ A
Sbjct: 182 RRRIYDIVNVLESLHLVSRVAKNQYSWHGRHSLPKTLRN------LQRLGEKQKYEEQMA 235
Query: 207 YLQELE 212
+LQ+ E
Sbjct: 236 HLQQKE 241
>sp|Q61502|E2F5_MOUSE Transcription factor E2F5 OS=Mus musculus GN=E2f5 PE=2 SV=2
Length = 335
Score = 39.7 bits (91), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 9/69 (13%)
Query: 151 RRRVYDALNVLMAMDIIS-KDKKEIQWKGL-----PRTSLNDIEELKA--ERLGLRNR-I 201
+RR+YD NVL +D+I K K IQWKG+ + ++ + LKA E L L+ R +
Sbjct: 78 KRRIYDITNVLEGIDLIEKKSKNSIQWKGVGAGCNTKEVIDRLRCLKAEIEDLELKEREL 137
Query: 202 EKKTAYLQE 210
+++ +LQ+
Sbjct: 138 DQQKLWLQQ 146
>sp|Q15329|E2F5_HUMAN Transcription factor E2F5 OS=Homo sapiens GN=E2F5 PE=1 SV=1
Length = 346
Score = 39.7 bits (91), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 9/69 (13%)
Query: 151 RRRVYDALNVLMAMDIIS-KDKKEIQWKGL-----PRTSLNDIEELKA--ERLGLRNR-I 201
+RR+YD NVL +D+I K K IQWKG+ + ++ + LKA E L L+ R +
Sbjct: 88 KRRIYDITNVLEGIDLIEKKSKNSIQWKGVGAGCNTKEVIDRLRYLKAEIEDLELKEREL 147
Query: 202 EKKTAYLQE 210
+++ +LQ+
Sbjct: 148 DQQKLWLQQ 156
>sp|Q6S7F2|E2F7_MOUSE Transcription factor E2F7 OS=Mus musculus GN=E2f7 PE=1 SV=1
Length = 904
Score = 39.3 bits (90), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 10/71 (14%)
Query: 151 RRRVYDALNVLMAMDIISK-DKKEIQWKG---LPRTSLNDIEELKAERLGLRNRIEKKTA 206
RRR+YD +NVL ++ ++S+ K + W G LP+T L + +RLG + E++ A
Sbjct: 184 RRRIYDIVNVLESLHLVSRVAKNQYGWHGRHSLPKT-LRTL-----QRLGEEQKYEEQMA 237
Query: 207 YLQELEDQFVG 217
LQ+ E +G
Sbjct: 238 CLQQKELDLMG 248
>sp|Q62814|E2F5_RAT Transcription factor E2F5 (Fragment) OS=Rattus norvegicus GN=E2f5
PE=2 SV=1
Length = 300
Score = 38.9 bits (89), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 9/69 (13%)
Query: 151 RRRVYDALNVLMAMDIIS-KDKKEIQWKGL-----PRTSLNDIEELKA--ERLGLRNR-I 201
+RR+YD NVL +D+I K K IQWKG+ + ++ + LKA E L L+ R +
Sbjct: 43 KRRIYDITNVLEGIDLIEKKSKNSIQWKGVGAGCNTKEVIDRLRCLKAEIEDLELKEREL 102
Query: 202 EKKTAYLQE 210
+++ +LQ+
Sbjct: 103 DQQKLWLQQ 111
>sp|Q8RWL0|E2FF_ARATH E2F transcription factor-like E2FF OS=Arabidopsis thaliana GN=E2FF
PE=2 SV=1
Length = 354
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 10/55 (18%)
Query: 151 RRRVYDALNVLMAMDIISKD-KKEIQWKG---LPRTSLNDIEELKAERLGLRNRI 201
RRR+YD +N+L ++ I+++ K + WKG +PR+ ++ELK E G+R R+
Sbjct: 58 RRRIYDVVNILESIGIVARRGKNQYSWKGFGEIPRS----LDELKEE--GMRERL 106
>sp|Q16254|E2F4_HUMAN Transcription factor E2F4 OS=Homo sapiens GN=E2F4 PE=1 SV=2
Length = 413
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 13/79 (16%)
Query: 151 RRRVYDALNVLMAMDIIS-KDKKEIQWKGL-----PRTSLNDIEELKAERLGLRNRIEKK 204
+RR+YD NVL + +I K K IQWKG+ R + + ELKAE IE+
Sbjct: 55 KRRIYDITNVLEGIGLIEKKSKNSIQWKGVGPGCNTREIADKLIELKAE-------IEEL 107
Query: 205 TAYLQELEDQFVGLQNLIQ 223
QEL+ V +Q I+
Sbjct: 108 QQREQELDQHKVWVQQSIR 126
>sp|D4A4D7|E2F7_RAT Transcription factor E2F7 OS=Rattus norvegicus GN=E2f7 PE=3 SV=1
Length = 902
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 10/66 (15%)
Query: 151 RRRVYDALNVLMAMDIISK-DKKEIQWKG---LPRTSLNDIEELKAERLGLRNRIEKKTA 206
RRR+YD +NVL ++ ++S+ K + W G LP+T L + +RLG + E++ A
Sbjct: 184 RRRIYDIVNVLESLHLVSRVAKNQYGWHGRHSLPKT-LRTL-----QRLGEEQKYEEQMA 237
Query: 207 YLQELE 212
LQ+ E
Sbjct: 238 CLQQKE 243
>sp|E1BKK0|E2F8_BOVIN Transcription factor E2F8 OS=Bos taurus GN=E2F8 PE=3 SV=2
Length = 866
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 13/76 (17%)
Query: 146 DEKNI-RRRVYDALNVLMAMDIISK-DKKEIQWKGLPRTSLNDI-EELKAERLGLRNR-- 200
+E N+ RRR+YD +NVL ++ ++S+ K W G R +LN I E LK+ +G N+
Sbjct: 148 EELNVERRRIYDIVNVLESLHMVSRLAKNRYTWHG--RHNLNQILETLKS--VGEENKYA 203
Query: 201 ----IEKKTAYLQELE 212
+ KK Y QE E
Sbjct: 204 EQIMMIKKKEYEQEFE 219
>sp|Q01094|E2F1_HUMAN Transcription factor E2F1 OS=Homo sapiens GN=E2F1 PE=1 SV=1
Length = 437
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 38/84 (45%), Gaps = 16/84 (19%)
Query: 151 RRRVYDALNVLMAMDIIS-KDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTA--- 206
+RR+YD NVL + +I+ K K IQW G T +G+ R+E T
Sbjct: 164 KRRIYDITNVLEGIQLIAKKSKNHIQWLGSHTT------------VGVGGRLEGLTQDLR 211
Query: 207 YLQELEDQFVGLQNLIQRNERLYS 230
LQE E Q L N+ RL S
Sbjct: 212 QLQESEQQLDHLMNICTTQLRLLS 235
>sp|A1JK14|GSH1_YERE8 Glutamate--cysteine ligase OS=Yersinia enterocolitica serotype O:8
/ biotype 1B (strain 8081) GN=gshA PE=3 SV=1
Length = 519
Score = 37.4 bits (85), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 84 KKRGQRAGGG--------DKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSN 135
+K GQ G G +K G+ L +V E ++ K T Y +V DELVA F DPS
Sbjct: 385 RKPGQTIGMGCNDTREPLEKVGKDLFTDLRRVAEVLDGKDSTEYQQVCDELVASFDDPSL 444
Query: 136 SLATPDQQQYDEKNI 150
+ + Q E I
Sbjct: 445 TFSARILQAMKEGGI 459
>sp|Q8R0K9|E2F4_MOUSE Transcription factor E2F4 OS=Mus musculus GN=E2f4 PE=2 SV=1
Length = 410
Score = 37.0 bits (84), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 13/79 (16%)
Query: 151 RRRVYDALNVLMAMDIIS-KDKKEIQWKGL-----PRTSLNDIEELKAERLGLRNRIEKK 204
+RR+YD NVL + +I K K IQWKG+ R + + ELKAE IE+
Sbjct: 55 KRRIYDITNVLEGIGLIEKKSKNSIQWKGVGPGCNTREIADKLIELKAE-------IEEL 107
Query: 205 TAYLQELEDQFVGLQNLIQ 223
QEL+ V +Q I+
Sbjct: 108 QQREQELDQHKVWVQQSIR 126
>sp|Q9FNY0|E2FA_ARATH Transcription factor E2FA OS=Arabidopsis thaliana GN=E2FA PE=1 SV=1
Length = 485
Score = 36.6 bits (83), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 13/76 (17%)
Query: 151 RRRVYDALNVLMAMDIISKD-KKEIQWKGLPRTSLN------------DIEELKAERLGL 197
+RR+YD NVL +D+I K K I WKG+ + +IE L E L
Sbjct: 204 KRRIYDITNVLEGIDLIEKPFKNRILWKGVDACPGDEDADVSVLQLQAEIENLALEEQAL 263
Query: 198 RNRIEKKTAYLQELED 213
N+I + L++L +
Sbjct: 264 DNQIRQTEERLRDLSE 279
>sp|Q9FV70|E2FC_ARATH Transcription factor E2FC OS=Arabidopsis thaliana GN=E2FC PE=1 SV=1
Length = 396
Score = 36.6 bits (83), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 66/149 (44%), Gaps = 24/149 (16%)
Query: 80 GGKKKKRGQRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPS---NS 136
G K K G+R G+ GL S+ C S G T V +L+ E D + N
Sbjct: 127 GTKLLKAGKRMANGEVQNGGLNGASIN-CRYDSSLGLLTKKFV--KLIQEAEDGTLDLNY 183
Query: 137 LATPDQQQYDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG---LPRTSLND------ 186
A + Q +RR+YD NVL + +I K K I+WKG L + L D
Sbjct: 184 CAVVLEVQ------KRRIYDITNVLEGIGLIEKTTKNHIRWKGADNLGQKDLGDQISRLK 237
Query: 187 --IEELKAERLGLRNRIEKKTAYLQELED 213
+E +++E L + I ++ L+ LE+
Sbjct: 238 SEVESMQSEESRLDDLIRERQEALRSLEE 266
>sp|Q9FV71|E2FB_ARATH Transcription factor E2FB OS=Arabidopsis thaliana GN=E2FB PE=1 SV=1
Length = 469
Score = 36.2 bits (82), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 151 RRRVYDALNVLMAMDIISKD-KKEIQWKGL----PRTSLNDIEELKAERLGLRNRIEKKT 205
+RR+YD NVL + +I K K IQWKGL P ++ I L+ E L +
Sbjct: 166 KRRIYDITNVLEGIGLIEKTLKNRIQWKGLDVSKPGETIESIANLQDEVQNLAAEEARLD 225
Query: 206 AYLQELEDQFVGLQNLIQRNERL 228
++E +++ L + N+RL
Sbjct: 226 DQIRESQERLTSLSE-DENNKRL 247
>sp|Q4FM20|SYV_PELUB Valine--tRNA ligase OS=Pelagibacter ubique (strain HTCC1062)
GN=valS PE=3 SV=1
Length = 875
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
Query: 90 AGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKN 149
A G DK+ G +F KV E E G N++ + D S + T D+ N
Sbjct: 95 ADGIDKNEIGREKFIEKVWEWKEEHGDIILNQLKK--LGCSCDWSRNAFTMDE------N 146
Query: 150 IRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIE 188
+ + V L +I KDKK + W + +T+++D+E
Sbjct: 147 LSKSVLKVFVELHKKGLIYKDKKLVNWDTVLKTAISDLE 185
>sp|O00716|E2F3_HUMAN Transcription factor E2F3 OS=Homo sapiens GN=E2F3 PE=1 SV=1
Length = 465
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 14/138 (10%)
Query: 151 RRRVYDALNVLMAMDII-SKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQ 209
+RR+YD NVL + +I K K +QW G SL++ + A+ GL + + + +
Sbjct: 215 KRRIYDITNVLEGIHLIKKKSKNNVQWMG---CSLSEDGGMLAQCQGLSKEVTELSQEEK 271
Query: 210 ELEDQF----VGLQNLIQ--RNERL----YSSGNAPSGGVALPFILVQTRPHATVEVEIS 259
+L++ + L+ L + N+RL Y SG I+V+ P +EV S
Sbjct: 272 KLDELIQSCTLDLKLLTEDSENQRLAYVTYQDIRKISGLKDQTVIVVKAPPETRLEVPDS 331
Query: 260 EDMQLVHFDFNSTPFKLH 277
+ +H P +++
Sbjct: 332 IESLQIHLASTQGPIEVY 349
>sp|O35261|E2F3_MOUSE Transcription factor E2F3 OS=Mus musculus GN=E2f3 PE=1 SV=2
Length = 457
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 14/138 (10%)
Query: 151 RRRVYDALNVLMAMDII-SKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQ 209
+RR+YD NVL + +I K K +QW G SL++ + A+ GL + + + +
Sbjct: 207 KRRIYDITNVLEGIHLIKKKSKNNVQWMG---CSLSEDGGMLAQCQGLSKEVTELSQEEK 263
Query: 210 ELEDQF----VGLQNLIQ--RNERL----YSSGNAPSGGVALPFILVQTRPHATVEVEIS 259
+L++ + L+ L + N+RL Y SG I+V+ P +EV S
Sbjct: 264 KLDELIQSCTLDLKLLTEDSENQRLAYVTYQDIRKISGLKDQTVIVVKAPPETRLEVPDS 323
Query: 260 EDMQLVHFDFNSTPFKLH 277
+ +H P +++
Sbjct: 324 IESLQIHLASTQGPIEVY 341
>sp|F1QZ88|E2F8_DANRE Transcription factor E2F8 OS=Danio rerio GN=e2f8 PE=2 SV=1
Length = 917
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 151 RRRVYDALNVLMAMDIISK-DKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYL- 208
RRR+YD +NVL +++++S+ K W G R L + +R G NR E+ +
Sbjct: 167 RRRIYDIMNVLESLNMVSRLAKNRYTWHG--RVKLAQTLAV-LKRAGKENRYEQLMQQIR 223
Query: 209 ---QELEDQFVGLQNLIQRNERLYS 230
QE E++ L + NE + S
Sbjct: 224 QRSQEREEREFDLDGEEKENEEMSS 248
>sp|Q9LFQ9|E2FD_ARATH E2F transcription factor-like E2FD OS=Arabidopsis thaliana GN=E2FD
PE=1 SV=1
Length = 359
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 151 RRRVYDALNVLMAMDIISKD-KKEIQWKGL---PRTSLNDIEELKAERLGLRNRIEKK-- 204
RRR+YD +N+L ++ ++++ K + WKG PR EE E+ + + K
Sbjct: 50 RRRIYDVVNILESIGLVARSGKNQYSWKGFGAVPRALSELKEEGMKEKFAIVPFVAKSEM 109
Query: 205 TAYLQELEDQFV 216
Y +E E+ F+
Sbjct: 110 VVYEKEGEESFM 121
>sp|Q90977|E2F1_CHICK Transcription factor E2F1 OS=Gallus gallus GN=E2F1 PE=2 SV=1
Length = 403
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 151 RRRVYDALNVLMAMDIIS-KDKKEIQWKG 178
+RR+YD NVL + +I+ K K IQW G
Sbjct: 141 KRRIYDITNVLEGIQLITKKSKNNIQWLG 169
>sp|E7KEZ1|SPC42_YEASA Spindle pole body component SPC42 OS=Saccharomyces cerevisiae
(strain AWRI796) GN=SPC42 PE=3 SV=1
Length = 363
Score = 32.7 bits (73), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 172 KEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSS 231
KE+ +K R N+I ELK LR+++EK ++LEDQ + LQ I E+ S
Sbjct: 70 KELNFKL--REKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKLSD 127
Query: 232 GNAPSGGVALPFI 244
N+ + P +
Sbjct: 128 ANSTFKEMRFPKV 140
>sp|C8ZCC8|SPC42_YEAS8 Spindle pole body component SPC42 OS=Saccharomyces cerevisiae
(strain Lalvin EC1118 / Prise de mousse) GN=SPC42 PE=3
SV=1
Length = 363
Score = 32.7 bits (73), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 172 KEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSS 231
KE+ +K R N+I ELK LR+++EK ++LEDQ + LQ I E+ S
Sbjct: 70 KELNFKL--REKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKLSD 127
Query: 232 GNAPSGGVALPFI 244
N+ + P +
Sbjct: 128 ANSTFKEMRFPKV 140
>sp|A6ZZS3|SPC42_YEAS7 Spindle pole body component SPC42 OS=Saccharomyces cerevisiae
(strain YJM789) GN=SPC42 PE=3 SV=1
Length = 363
Score = 32.7 bits (73), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 172 KEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSS 231
KE+ +K R N+I ELK LR+++EK ++LEDQ + LQ I E+ S
Sbjct: 70 KELNFKL--REKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKLSD 127
Query: 232 GNAPSGGVALPFI 244
N+ + P +
Sbjct: 128 ANSTFKEMRFPKV 140
>sp|C7GP31|SPC42_YEAS2 Spindle pole body component SPC42 OS=Saccharomyces cerevisiae
(strain JAY291) GN=SPC42 PE=3 SV=1
Length = 363
Score = 32.7 bits (73), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 172 KEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSS 231
KE+ +K R N+I ELK LR+++EK ++LEDQ + LQ I E+ S
Sbjct: 70 KELNFKL--REKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKLSD 127
Query: 232 GNAPSGGVALPFI 244
N+ + P +
Sbjct: 128 ANSTFKEMRFPKV 140
>sp|B3LR46|SPC42_YEAS1 Spindle pole body component SPC42 OS=Saccharomyces cerevisiae
(strain RM11-1a) GN=SPC42 PE=3 SV=1
Length = 363
Score = 32.7 bits (73), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 172 KEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSS 231
KE+ +K R N+I ELK LR+++EK ++LEDQ + LQ I E+ S
Sbjct: 70 KELNFKL--REKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKLSD 127
Query: 232 GNAPSGGVALPFI 244
N+ + P +
Sbjct: 128 ANSTFKEMRFPKV 140
>sp|Q61501|E2F1_MOUSE Transcription factor E2F1 OS=Mus musculus GN=E2f1 PE=1 SV=1
Length = 430
Score = 32.7 bits (73), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 151 RRRVYDALNVLMAMDIIS-KDKKEIQWKG 178
+RR+YD NVL + +I+ K K IQW G
Sbjct: 159 KRRIYDITNVLEGIQLIAKKSKNHIQWLG 187
>sp|P36094|SPC42_YEAST Spindle pole body component SPC42 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SPC42 PE=1 SV=1
Length = 363
Score = 32.7 bits (73), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 172 KEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSS 231
KE+ +K R N+I ELK LR+++EK ++LEDQ + LQ I E+ S
Sbjct: 70 KELNFKL--REKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKLSD 127
Query: 232 GNAPSGGVALPFI 244
N+ + P +
Sbjct: 128 ANSTFKEMRFPKV 140
>sp|Q27368|E2F_DROME Transcription factor E2f OS=Drosophila melanogaster GN=E2f PE=1
SV=2
Length = 805
Score = 32.3 bits (72), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 151 RRRVYDALNVLMAMDIIS-KDKKEIQWK 177
+RR+YD NVL ++I+ K K IQW+
Sbjct: 291 KRRIYDITNVLEGINILEKKSKNNIQWR 318
>sp|A8AXH8|RNH2_STRGC Ribonuclease HII OS=Streptococcus gordonii (strain Challis / ATCC
35105 / CH1 / DL1 / V288) GN=rnhB PE=3 SV=1
Length = 254
Score = 31.6 bits (70), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 172 KEIQWKGLPRTSLND--IEEL-KAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERL 228
KEIQ + T L+D +EE+ K +R G++ +EK+ +Q D+ + L +I+ + L
Sbjct: 5 KEIQQRLELVTELSDSFLEEVAKDQRSGVQKAVEKRKKAIQAELDEDLRLDQMIRYEKEL 64
Query: 229 YSSGNAPSGGV 239
Y SG G+
Sbjct: 65 YQSGYQAIAGI 75
>sp|Q66E64|GSH1_YERPS Glutamate--cysteine ligase OS=Yersinia pseudotuberculosis serotype
I (strain IP32953) GN=gshA PE=3 SV=1
Length = 519
Score = 31.6 bits (70), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 84 KKRGQRAGGG--------DKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSN 135
+K GQ G G + G+ L +V E ++ +Y +V DELVA F DP
Sbjct: 385 RKPGQTIGIGCSDSRQPLETVGKALFADLRRVAEVLDGSESASYQQVCDELVASFDDPEL 444
Query: 136 SLATPDQQQYDEKNI 150
+ + + EK I
Sbjct: 445 TFSARILKVMQEKGI 459
>sp|A2BXQ6|SYS_PROM5 Serine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9515)
GN=serS PE=3 SV=1
Length = 425
Score = 31.6 bits (70), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 182 TSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVAL 241
+S ++ + +A R +R +I+KKT+Y+ L + + + + +G P G V +
Sbjct: 353 SSCSNCRDFQARRSSIRTKIDKKTSYIHTLNGSGLAIGRTMA---AILENGQRPDGSVKI 409
Query: 242 PFILV 246
P +LV
Sbjct: 410 PDVLV 414
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.130 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140,024,399
Number of Sequences: 539616
Number of extensions: 6210759
Number of successful extensions: 21280
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 21119
Number of HSP's gapped (non-prelim): 207
length of query: 350
length of database: 191,569,459
effective HSP length: 118
effective length of query: 232
effective length of database: 127,894,771
effective search space: 29671586872
effective search space used: 29671586872
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)