Query 018827
Match_columns 350
No_of_seqs 185 out of 375
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 06:40:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018827.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018827hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1cf7_B Protein (transcription 100.0 4.4E-36 1.5E-40 246.2 5.5 92 91-184 3-94 (95)
2 2aze_A Transcription factor DP 100.0 3.5E-31 1.2E-35 233.3 11.3 119 182-302 2-124 (155)
3 1cf7_A Protein (transcription 99.8 2.6E-19 8.8E-24 141.2 3.7 66 95-180 7-75 (76)
4 2aze_B Transcription factor E2 99.6 1.8E-14 6E-19 120.0 11.6 87 184-277 5-101 (106)
5 1sfx_A Conserved hypothetical 84.5 2.1 7.1E-05 32.1 5.9 52 98-170 16-67 (109)
6 1qbj_A Protein (double-strande 75.9 2.8 9.7E-05 32.5 4.1 55 104-179 12-70 (81)
7 3g3z_A NMB1585, transcriptiona 75.6 18 0.00061 28.6 9.0 51 98-169 27-77 (145)
8 2hr3_A Probable transcriptiona 72.9 9.5 0.00033 30.1 6.7 51 98-169 31-82 (147)
9 1ku9_A Hypothetical protein MJ 72.4 22 0.00077 27.6 8.8 61 98-179 22-87 (152)
10 2a61_A Transcriptional regulat 72.4 24 0.00081 27.6 8.9 51 98-169 29-79 (145)
11 1qgp_A Protein (double strande 71.3 3.3 0.00011 31.5 3.4 52 105-177 17-72 (77)
12 2htj_A P fimbrial regulatory p 70.6 5.3 0.00018 29.7 4.4 53 105-178 3-59 (81)
13 3deu_A Transcriptional regulat 70.5 16 0.00056 30.2 7.9 52 98-170 49-101 (166)
14 3bpv_A Transcriptional regulat 69.7 15 0.00051 28.5 7.1 51 98-169 25-75 (138)
15 1oyi_A Double-stranded RNA-bin 69.2 2.6 8.9E-05 33.3 2.5 57 100-178 15-72 (82)
16 3r0a_A Putative transcriptiona 68.6 12 0.00041 30.1 6.5 52 98-170 22-75 (123)
17 3bj6_A Transcriptional regulat 68.2 23 0.00079 28.0 8.1 51 98-169 36-86 (152)
18 2fbh_A Transcriptional regulat 67.5 37 0.0013 26.4 9.0 51 98-169 33-84 (146)
19 2oqg_A Possible transcriptiona 67.2 16 0.00055 27.9 6.7 43 105-169 24-66 (114)
20 2yy0_A C-MYC-binding protein; 67.0 11 0.00039 27.3 5.3 31 184-214 18-48 (53)
21 3kp7_A Transcriptional regulat 66.9 22 0.00075 28.3 7.7 51 99-171 35-85 (151)
22 3ech_A MEXR, multidrug resista 65.9 21 0.00071 28.2 7.3 52 98-170 33-84 (142)
23 3k0l_A Repressor protein; heli 65.1 19 0.00065 29.2 7.1 51 98-169 42-92 (162)
24 3nrv_A Putative transcriptiona 64.9 18 0.00063 28.5 6.8 52 98-170 36-87 (148)
25 2fa5_A Transcriptional regulat 63.5 29 0.00099 27.8 7.8 52 98-170 45-96 (162)
26 1ub9_A Hypothetical protein PH 63.3 5.9 0.0002 29.5 3.4 44 105-169 19-62 (100)
27 2gxg_A 146AA long hypothetical 63.2 26 0.00088 27.4 7.3 50 98-169 33-82 (146)
28 3s2w_A Transcriptional regulat 63.1 24 0.00081 28.5 7.3 51 98-169 46-96 (159)
29 1s3j_A YUSO protein; structura 62.8 23 0.00079 28.1 7.1 51 98-169 33-83 (155)
30 3bro_A Transcriptional regulat 62.3 29 0.001 26.9 7.5 51 98-169 30-82 (141)
31 3cjn_A Transcriptional regulat 61.6 27 0.00094 28.0 7.4 51 98-169 48-98 (162)
32 2nyx_A Probable transcriptiona 61.5 23 0.00077 29.1 7.0 51 98-169 41-91 (168)
33 2fu4_A Ferric uptake regulatio 61.5 8.7 0.0003 28.3 4.0 49 105-169 20-70 (83)
34 2v8f_C MDIA1, profilin IIA; al 61.3 5.5 0.00019 25.3 2.3 21 322-342 3-23 (26)
35 3bja_A Transcriptional regulat 61.1 25 0.00084 27.2 6.8 51 98-169 29-79 (139)
36 2eth_A Transcriptional regulat 60.4 29 0.00099 27.8 7.3 51 98-169 40-90 (154)
37 3qph_A TRMB, A global transcri 60.3 4.3 0.00015 38.9 2.6 35 146-180 41-76 (342)
38 2qww_A Transcriptional regulat 60.2 10 0.00035 30.3 4.5 50 99-169 38-87 (154)
39 1okr_A MECI, methicillin resis 60.0 19 0.00065 27.9 6.0 66 98-180 6-73 (123)
40 3oop_A LIN2960 protein; protei 59.6 26 0.00089 27.5 6.8 51 98-169 33-83 (143)
41 1lj9_A Transcriptional regulat 59.5 60 0.0021 25.2 9.4 51 98-169 25-75 (144)
42 4hbl_A Transcriptional regulat 58.3 32 0.0011 27.4 7.2 51 98-169 37-87 (149)
43 1p6r_A Penicillinase repressor 58.1 17 0.00058 26.7 5.1 61 99-176 6-68 (82)
44 2rdp_A Putative transcriptiona 57.9 33 0.0011 27.0 7.1 51 98-169 38-88 (150)
45 2fbi_A Probable transcriptiona 57.7 23 0.00079 27.5 6.1 51 98-169 32-82 (142)
46 3boq_A Transcriptional regulat 56.4 13 0.00045 29.8 4.6 52 98-170 43-95 (160)
47 3cuo_A Uncharacterized HTH-typ 54.7 11 0.00036 28.1 3.5 44 105-169 27-70 (99)
48 3jth_A Transcription activator 53.6 9.2 0.00031 28.9 3.0 49 106-176 27-77 (98)
49 1ci6_A Transcription factor AT 51.7 51 0.0018 24.3 6.8 38 186-223 24-61 (63)
50 3e6m_A MARR family transcripti 51.2 21 0.00071 28.9 5.0 52 98-170 49-100 (161)
51 3eco_A MEPR; mutlidrug efflux 50.7 51 0.0018 25.6 7.1 51 98-169 27-79 (139)
52 3cdh_A Transcriptional regulat 50.5 14 0.00048 29.5 3.8 52 98-170 39-90 (155)
53 3tgn_A ADC operon repressor AD 50.4 87 0.003 24.3 9.7 52 96-169 32-83 (146)
54 1i1g_A Transcriptional regulat 49.9 15 0.00051 29.4 3.9 46 104-170 6-51 (141)
55 1jgs_A Multiple antibiotic res 49.1 29 0.00099 26.9 5.4 51 98-169 30-80 (138)
56 2nnn_A Probable transcriptiona 48.5 19 0.00066 27.8 4.2 50 99-169 35-84 (140)
57 2cfx_A HTH-type transcriptiona 48.5 17 0.00058 29.6 4.1 48 102-170 5-52 (144)
58 3jw4_A Transcriptional regulat 48.4 55 0.0019 25.8 7.0 52 98-170 37-90 (148)
59 2p5v_A Transcriptional regulat 46.5 19 0.00064 29.9 4.1 49 100-169 8-56 (162)
60 2pn6_A ST1022, 150AA long hypo 46.4 17 0.00056 29.6 3.6 44 105-169 6-49 (150)
61 2d1h_A ST1889, 109AA long hypo 46.0 52 0.0018 24.2 6.2 51 99-170 18-69 (109)
62 2kko_A Possible transcriptiona 45.9 15 0.00051 28.8 3.2 49 106-176 29-79 (108)
63 2fbk_A Transcriptional regulat 45.6 38 0.0013 28.1 5.9 52 98-170 65-119 (181)
64 3pqk_A Biofilm growth-associat 45.2 43 0.0015 25.4 5.7 51 105-177 26-78 (102)
65 2o03_A Probable zinc uptake re 44.6 24 0.00081 28.7 4.3 56 98-169 5-63 (131)
66 1r1u_A CZRA, repressor protein 44.5 22 0.00074 27.5 3.9 49 106-176 30-80 (106)
67 3twe_A Alpha4H; unknown functi 44.3 34 0.0012 21.6 3.9 22 187-208 3-24 (27)
68 2bv6_A MGRA, HTH-type transcri 44.3 12 0.00043 29.3 2.5 51 98-169 33-83 (142)
69 2cg4_A Regulatory protein ASNC 44.2 22 0.00075 29.1 4.1 49 100-169 6-54 (152)
70 3u2r_A Regulatory protein MARR 44.0 65 0.0022 26.1 7.0 51 98-169 42-94 (168)
71 1tbx_A ORF F-93, hypothetical 44.0 18 0.00062 27.2 3.3 54 99-169 5-58 (99)
72 1y0u_A Arsenical resistance op 43.8 18 0.0006 27.4 3.2 44 106-172 35-78 (96)
73 1u2w_A CADC repressor, cadmium 43.6 8.6 0.00029 30.8 1.4 43 106-169 46-88 (122)
74 1r7j_A Conserved hypothetical 43.0 45 0.0015 26.0 5.6 26 148-173 31-56 (95)
75 2dbb_A Putative HTH-type trans 42.8 19 0.00064 29.4 3.5 49 100-169 7-55 (151)
76 2hzt_A Putative HTH-type trans 42.8 15 0.00051 28.6 2.7 44 105-169 17-60 (107)
77 1z7u_A Hypothetical protein EF 42.8 61 0.0021 25.2 6.4 44 105-169 25-68 (112)
78 2cyy_A Putative HTH-type trans 41.7 25 0.00084 28.8 4.0 50 100-170 5-54 (151)
79 2ia0_A Putative HTH-type trans 41.6 25 0.00086 29.9 4.2 49 100-169 15-63 (171)
80 3hsr_A HTH-type transcriptiona 40.9 40 0.0014 26.5 5.1 51 98-169 32-82 (140)
81 2w25_A Probable transcriptiona 40.9 27 0.00091 28.5 4.1 49 100-169 5-53 (150)
82 3fm5_A Transcriptional regulat 40.4 76 0.0026 25.0 6.7 51 98-169 35-86 (150)
83 3k1t_A Glutamate--cysteine lig 40.3 58 0.002 32.9 7.0 22 240-261 276-301 (432)
84 2frh_A SARA, staphylococcal ac 39.8 45 0.0015 26.3 5.2 50 99-169 34-85 (127)
85 3nmd_A CGMP dependent protein 38.0 97 0.0033 24.0 6.5 36 187-222 21-56 (72)
86 2wt7_A Proto-oncogene protein 37.8 1.1E+02 0.0037 22.4 6.6 36 187-222 25-60 (63)
87 3gva_A Alkyltransferase-like p 36.9 19 0.00065 30.0 2.6 26 102-127 5-33 (116)
88 2lkp_A Transcriptional regulat 36.9 41 0.0014 26.0 4.5 50 105-176 35-86 (119)
89 2kif_A O6-methylguanine-DNA me 36.8 19 0.00065 29.6 2.5 26 102-127 3-31 (108)
90 3bdd_A Regulatory protein MARR 36.5 33 0.0011 26.6 3.8 50 99-169 28-77 (142)
91 1t2k_D Cyclic-AMP-dependent tr 36.3 1.1E+02 0.0038 22.0 6.4 35 187-221 24-58 (61)
92 2e1c_A Putative HTH-type trans 35.1 39 0.0013 28.7 4.4 51 99-170 24-74 (171)
93 3f3x_A Transcriptional regulat 34.9 38 0.0013 26.6 4.0 49 99-169 34-82 (144)
94 2wte_A CSA3; antiviral protein 34.7 30 0.001 31.6 3.8 52 98-170 148-199 (244)
95 1mzb_A Ferric uptake regulatio 33.4 46 0.0016 27.1 4.4 56 98-169 12-71 (136)
96 2fe3_A Peroxide operon regulat 32.9 37 0.0013 28.1 3.7 56 98-169 16-74 (145)
97 1fxk_C Protein (prefoldin); ar 32.5 99 0.0034 25.0 6.3 49 167-215 66-118 (133)
98 1xn7_A Hypothetical protein YH 32.4 33 0.0011 26.2 3.1 45 105-170 5-49 (78)
99 2jsc_A Transcriptional regulat 31.2 33 0.0011 27.1 3.1 49 106-176 25-75 (118)
100 3mwm_A ZUR, putative metal upt 31.1 47 0.0016 27.3 4.1 58 96-169 6-66 (139)
101 3i4p_A Transcriptional regulat 30.7 44 0.0015 27.8 3.9 46 103-169 4-49 (162)
102 3eyy_A Putative iron uptake re 30.6 38 0.0013 28.1 3.4 56 98-169 13-70 (145)
103 2xdj_A Uncharacterized protein 29.5 1.3E+02 0.0046 23.5 6.2 29 185-213 27-55 (83)
104 4aik_A Transcriptional regulat 29.0 2.3E+02 0.0078 22.9 8.4 65 99-184 28-97 (151)
105 2k48_A Nucleoprotein; viral pr 29.0 97 0.0033 25.7 5.5 44 171-214 21-64 (107)
106 2fsw_A PG_0823 protein; alpha- 28.8 26 0.0009 27.1 2.0 43 106-169 29-71 (107)
107 2pg4_A Uncharacterized protein 28.4 42 0.0014 25.1 3.1 43 106-169 19-63 (95)
108 2k02_A Ferrous iron transport 28.0 37 0.0013 26.8 2.7 44 105-169 5-48 (87)
109 1on2_A Transcriptional regulat 27.9 47 0.0016 26.4 3.4 46 105-171 11-56 (142)
110 2xig_A Ferric uptake regulatio 27.9 67 0.0023 26.7 4.6 56 98-169 21-79 (150)
111 2x4h_A Hypothetical protein SS 27.7 69 0.0024 25.2 4.4 39 112-171 27-65 (139)
112 2zdi_C Prefoldin subunit alpha 27.6 1.1E+02 0.0037 25.6 5.8 55 165-219 74-132 (151)
113 1j5y_A Transcriptional regulat 26.9 63 0.0021 27.6 4.3 53 105-178 24-78 (187)
114 2k4b_A Transcriptional regulat 26.0 22 0.00076 28.2 1.2 61 98-175 31-93 (99)
115 2w57_A Ferric uptake regulatio 25.7 53 0.0018 27.3 3.5 56 98-169 11-70 (150)
116 2aze_B Transcription factor E2 25.6 1.1E+02 0.0038 24.8 5.3 32 184-215 12-43 (106)
117 1wrj_A Methylated-DNA--protein 25.4 34 0.0012 29.7 2.3 29 98-126 67-98 (156)
118 3hnw_A Uncharacterized protein 25.4 1.5E+02 0.0051 25.1 6.3 12 157-168 57-68 (138)
119 2f2e_A PA1607; transcription f 25.0 58 0.002 26.8 3.6 43 105-169 27-69 (146)
120 2pex_A Transcriptional regulat 24.9 66 0.0023 25.4 3.8 51 98-169 43-93 (153)
121 3nmd_A CGMP dependent protein 23.9 2.4E+02 0.0081 21.8 6.5 32 192-223 33-64 (72)
122 2g9w_A Conserved hypothetical 23.6 2.5E+02 0.0087 22.3 7.2 54 99-169 6-60 (138)
123 1r1t_A Transcriptional repress 23.2 75 0.0026 25.4 3.9 49 106-176 50-100 (122)
124 2heo_A Z-DNA binding protein 1 23.1 68 0.0023 23.2 3.3 47 104-171 12-59 (67)
125 3f6o_A Probable transcriptiona 22.8 50 0.0017 25.9 2.7 50 105-176 21-72 (118)
126 2fxa_A Protease production reg 22.7 27 0.00092 30.3 1.2 51 98-169 44-94 (207)
127 1gmj_A ATPase inhibitor; coile 22.7 2.6E+02 0.009 22.2 6.8 20 199-218 51-70 (84)
128 3viq_B Mating-type switching p 22.3 2.1E+02 0.0073 22.7 6.2 25 188-212 4-28 (85)
129 2p5k_A Arginine repressor; DNA 22.0 1.9E+02 0.0064 19.6 5.3 43 107-169 10-52 (64)
130 1mkm_A ICLR transcriptional re 22.0 2.2E+02 0.0074 25.1 7.0 50 105-175 11-62 (249)
131 3nqo_A MARR-family transcripti 21.1 2.8E+02 0.0097 23.0 7.3 50 99-169 38-89 (189)
132 1wgf_A Upstream binding factor 20.6 2E+02 0.007 21.7 5.7 40 92-131 20-60 (90)
133 1deb_A APC protein, adenomatou 20.3 2.6E+02 0.0089 20.5 6.8 41 184-224 9-49 (54)
134 1yyv_A Putative transcriptiona 20.2 49 0.0017 26.9 2.2 42 107-169 40-81 (131)
135 4ets_A Ferric uptake regulatio 20.0 1.2E+02 0.0041 25.6 4.7 56 98-169 27-87 (162)
No 1
>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=100.00 E-value=4.4e-36 Score=246.20 Aligned_cols=92 Identities=70% Similarity=1.108 Sum_probs=78.1
Q ss_pred CCccccCccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcC
Q 018827 91 GGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (350)
Q Consensus 91 ~~~~k~~~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKs 170 (350)
..++|+++||||||++|||||++++.|||+||||+||+||..++++. +.+++||++|+|||||||||||+|||||+|+
T Consensus 3 ~~~~k~~~GLr~fS~kVcekVk~k~~Tty~eVAdeLV~e~~~~~~~~--~~~~~~d~~~~rRRvYD~~NVl~a~gii~K~ 80 (95)
T 1cf7_B 3 KKGDKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHL--AADSAYDQKNIRRRVYDALNVLMAMNIISKE 80 (95)
T ss_dssp ------CCHHHHHHHHHHHHHHHHSEECHHHHHHHHHHHHHTCTTCC--GGGSHHHHHHHHHHHHHHHHHHHHTTSBCCC
T ss_pred ccccccCccHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcccccC--ccchhcccccchhhHHHHHHHHHHhcceecC
Confidence 35799999999999999999999999999999999999999876654 4578999999999999999999999999999
Q ss_pred CCceeecCCCCCCh
Q 018827 171 KKEIQWKGLPRTSL 184 (350)
Q Consensus 171 Kk~IqW~G~~~~s~ 184 (350)
||.|+|+|++.++.
T Consensus 81 k~~i~W~g~~~~~~ 94 (95)
T 1cf7_B 81 KKEIKWIGLPTNSA 94 (95)
T ss_dssp SSCEEBCCCC----
T ss_pred CCEEEEecCCcccc
Confidence 99999999997654
No 2
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=99.97 E-value=3.5e-31 Score=233.26 Aligned_cols=119 Identities=31% Similarity=0.464 Sum_probs=109.1
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---CCCCCCcccceEEEEcCCCcEEEecc
Q 018827 182 TSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSG---NAPSGGVALPFILVQTRPHATVEVEI 258 (350)
Q Consensus 182 ~s~~~~~~Lk~El~~L~e~I~~K~~~LqEL~~q~~aLknLierNk~ly~s~---~~~~e~i~LPfIaVkAP~~T~LEVp~ 258 (350)
++.++|+.|++|+.+++++|++|+++|+||+.|+++|+||++||+.++... ..+...|+||||+|+|.++|+|+|++
T Consensus 2 ~s~qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafknLv~RN~~~e~~~~~~~~~~~~I~LPFIlV~T~k~t~I~ceI 81 (155)
T 2aze_A 2 EFAQECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHAEQQASRPPPPNSVIHLPFIIVNTSKKTVIDCSI 81 (155)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCCCGGGEEESSCEEEEEESSCCEEEEE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCEeecCEEEEEcCCCCEEEEEE
Confidence 568899999999999999999999999999999999999999999998642 34567899999999999999999999
Q ss_pred CCCcEEEEEEeCCCCeEEecChhhhhhhcc-ccccCCCCCccCCC
Q 018827 259 SEDMQLVHFDFNSTPFKLHDDNSVLKAMKF-CERQQSDDMAQSFP 302 (350)
Q Consensus 259 peD~~qv~fks~~gPieV~DD~~iLK~m~~-~~~~~~~~~~~~~~ 302 (350)
++|+++|||+|++ ||+||||++|||+||| |+.+.+.| +.++.
T Consensus 82 SeD~~~~~F~F~~-pFEIHDD~eVLK~mgl~~gle~g~c-s~e~l 124 (155)
T 2aze_A 82 SNDKFEYLFNFDN-TFEIHDDIEVLKRMGMACGLESGSC-SAEDL 124 (155)
T ss_dssp CTTSSEEEEEESS-CEEEEEHHHHHHHTTTTTTGGGTCC-CHHHH
T ss_pred ecCccEEEEeCCC-CeeccChHHHHHHHHHHhCCCCCCC-CHHHH
Confidence 9999999999987 9999999999999999 89999999 65544
No 3
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=99.75 E-value=2.6e-19 Score=141.24 Aligned_cols=66 Identities=32% Similarity=0.553 Sum_probs=57.2
Q ss_pred ccCccchhhHHHHHHHHHh--cCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc-CC
Q 018827 95 KSGRGLRQFSMKVCEKVES--KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK-DK 171 (350)
Q Consensus 95 k~~~GLR~fS~KVcekVk~--kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK-sK 171 (350)
+..++|..++.+|++.+++ .+.++++++|++|.. ++|||||||+|||||||||+| +|
T Consensus 7 R~~~SL~~lt~kFi~l~~~~~~~~i~l~~aa~~L~v--------------------~~kRRiYDI~NVLe~igli~K~~k 66 (76)
T 1cf7_A 7 RHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAV--------------------RQKRRIYDITNVLEGIGLIEKKSK 66 (76)
T ss_dssp TTTTCHHHHHHHHHHHHHHSSTTEEEHHHHHHHTTT--------------------CCTHHHHHHHHHHHHHTSEEEEET
T ss_pred CccCcHHHHHHHHHHHHHhCCCCcCcHHHHHHHhCC--------------------ccceehhhHHHHHhHhcceeecCC
Confidence 4457999999999999998 578999999999851 389999999999999999999 89
Q ss_pred CceeecCCC
Q 018827 172 KEIQWKGLP 180 (350)
Q Consensus 172 k~IqW~G~~ 180 (350)
|.|+|+|.+
T Consensus 67 ~~~~W~G~~ 75 (76)
T 1cf7_A 67 NSIQWKGVG 75 (76)
T ss_dssp TEEEEC---
T ss_pred CcEEEeCCC
Confidence 999999985
No 4
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=99.57 E-value=1.8e-14 Score=120.04 Aligned_cols=87 Identities=16% Similarity=0.238 Sum_probs=66.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--HHH-hhh------cCCCCCCCcccceEEEEcCCCcE
Q 018827 184 LNDIEELKAERLGLRNRIEKKTAYLQELED-QFVGLQNLIQR--NER-LYS------SGNAPSGGVALPFILVQTRPHAT 253 (350)
Q Consensus 184 ~~~~~~Lk~El~~L~e~I~~K~~~LqEL~~-q~~aLknLier--Nk~-ly~------s~~~~~e~i~LPfIaVkAP~~T~ 253 (350)
..++..|++|+..|.+..+ .|++++. ....|++|.++ |.. .|+ .+.+|.+++ +||||||+||+
T Consensus 5 ~~~~~~Lk~El~~L~~~E~----~LD~~i~~~~~~l~~lted~~n~~~aYVT~~Di~~i~~f~~qt---viaIkAP~gT~ 77 (106)
T 2aze_B 5 GGRLEGLTQDLRQLQESEQ----QLDHLMNICTTQLRLLSEDTDSQRLAYVTCQDLRSIADPAEQM---VMVIKAPPETQ 77 (106)
T ss_dssp -CHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCHHHHHHCEEEHHHHHTTSCTTTEE---EEEEECCTTCE
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhcccccccceecHHHHhcCcCCCcCe---EEEEECCCCCe
Confidence 3457788888887766553 3444442 23457777764 444 354 346899998 99999999999
Q ss_pred EEeccCCCcEEEEEEeCCCCeEEe
Q 018827 254 VEVEISEDMQLVHFDFNSTPFKLH 277 (350)
Q Consensus 254 LEVp~peD~~qv~fks~~gPieV~ 277 (350)
||||+|++.++|||+|++|||+||
T Consensus 78 LeVpdp~~~yqi~LkS~~GPIdV~ 101 (106)
T 2aze_B 78 LQAVDSSENFQISLKSKQGPIDVF 101 (106)
T ss_dssp EEEEECSSCEEEEEECSSSCCEEE
T ss_pred eeeCCCCcceEEEEECCCCCEEEE
Confidence 999999999999999999999998
No 5
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=84.53 E-value=2.1 Score=32.08 Aligned_cols=52 Identities=21% Similarity=0.319 Sum_probs=41.8
Q ss_pred ccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcC
Q 018827 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKs 170 (350)
-||-..-..|+..+...+..|..|+|+.+- .-+--||.+++.|+.-|+|++.
T Consensus 16 ~~l~~~~~~il~~l~~~~~~s~~ela~~l~---------------------is~~tv~~~l~~L~~~glv~~~ 67 (109)
T 1sfx_A 16 LSFKPSDVRIYSLLLERGGMRVSEIARELD---------------------LSARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp TCCCHHHHHHHHHHHHHCCBCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCHHHHHHHHHHHHcCCCCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCEEEE
Confidence 355555577888888778889999998873 3467899999999999999993
No 6
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=75.89 E-value=2.8 Score=32.53 Aligned_cols=55 Identities=18% Similarity=0.248 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcC---CCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc-CCCceeecCC
Q 018827 104 SMKVCEKVESKG---RTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKGL 179 (350)
Q Consensus 104 S~KVcekVk~kg---~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK-sKk~IqW~G~ 179 (350)
-.+|++.+++.+ .+|+.|+|.+|- .-|+-|.-.|.-|+.-|+|.+ .++.=.|.-.
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lg---------------------vsr~tV~~~L~~Le~~G~I~~~g~~~~~W~i~ 70 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLG---------------------TPKKEINRVLYSLAKKGKLQKEAGTPPLWKIA 70 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEEESSSSCEEEEC
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCEEecCCCCCeeEEe
Confidence 367999999999 899999999984 345556666778999999998 4555667433
No 7
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=75.57 E-value=18 Score=28.59 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=40.7
Q ss_pred ccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
.||-.--..|...+...+.+|.+|+|+.+- .-+--|+-+++-|+.-|+|++
T Consensus 27 ~~lt~~q~~iL~~l~~~~~~t~~eLa~~l~---------------------~~~~tvs~~l~~Le~~Glv~r 77 (145)
T 3g3z_A 27 QDLNYNLFAVLYTLATEGSRTQKHIGEKWS---------------------LPKQTVSGVCKTLAGQGLIEW 77 (145)
T ss_dssp TTCCHHHHHHHHHHHHHCSBCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCEee
Confidence 466666677788887777789999988874 235578889999999999998
No 8
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=72.85 E-value=9.5 Score=30.11 Aligned_cols=51 Identities=16% Similarity=0.094 Sum_probs=41.4
Q ss_pred ccchhhHHHHHHHHHh-cCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 98 RGLRQFSMKVCEKVES-KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~-kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
.||-.--..|...+.. .+..|..++|+.|- .-+--|+-+++-|+.-|+|++
T Consensus 31 ~~l~~~~~~iL~~l~~~~~~~~~~~la~~l~---------------------i~~~~vs~~l~~Le~~glv~r 82 (147)
T 2hr3_A 31 DPVQFSQLVVLGAIDRLGGDVTPSELAAAER---------------------MRSSNLAALLRELERGGLIVR 82 (147)
T ss_dssp CHHHHHHHHHHHHHHHTTSCBCHHHHHHHTT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHcCCCCCHHHHHHHhC---------------------CChhhHHHHHHHHHHCCCEee
Confidence 5666666778888887 88899999998763 345678889999999999998
No 9
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=72.44 E-value=22 Score=27.62 Aligned_cols=61 Identities=18% Similarity=0.212 Sum_probs=41.4
Q ss_pred ccchhhHHHHHHHHH-hcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcC----CC
Q 018827 98 RGLRQFSMKVCEKVE-SKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD----KK 172 (350)
Q Consensus 98 ~GLR~fS~KVcekVk-~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKs----Kk 172 (350)
.||-.--.+|...+. ..+..|..|+|+.+- .-+--||.+++.|+.-|+|++. .+
T Consensus 22 ~gl~~~~~~il~~L~~~~~~~t~~ela~~l~---------------------~~~stvs~~l~~L~~~G~v~r~~~~~d~ 80 (152)
T 1ku9_A 22 HGLNKSVGAVYAILYLSDKPLTISDIMEELK---------------------ISKGNVSMSLKKLEELGFVRKVWIKGER 80 (152)
T ss_dssp TTCCHHHHHHHHHHHHCSSCEEHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEEECCTTCS
T ss_pred cCCChhHHHHHHHHHHcCCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCEEEEecCCCc
Confidence 345444455666664 356778888888773 3456799999999999999983 23
Q ss_pred ceeecCC
Q 018827 173 EIQWKGL 179 (350)
Q Consensus 173 ~IqW~G~ 179 (350)
...+...
T Consensus 81 r~~~~~~ 87 (152)
T 1ku9_A 81 KNYYEAV 87 (152)
T ss_dssp SCEEEEC
T ss_pred eEEEeec
Confidence 4445544
No 10
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=72.38 E-value=24 Score=27.60 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=40.5
Q ss_pred ccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
.||-.--..|+..+...+..|..|+|+.+- .-+--|+-+++-|+.-|+|++
T Consensus 29 ~~l~~~~~~iL~~l~~~~~~~~~~la~~l~---------------------~s~~tvs~~l~~L~~~glv~r 79 (145)
T 2a61_A 29 FGITPAQFDILQKIYFEGPKRPGELSVLLG---------------------VAKSTVTGLVKRLEADGYLTR 79 (145)
T ss_dssp HTCCHHHHHHHHHHHHHCCBCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHcCCCCHHHHHHHHC---------------------CCchhHHHHHHHHHHCCCeee
Confidence 356555577788887778889999998873 234578899999999999998
No 11
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=71.35 E-value=3.3 Score=31.50 Aligned_cols=52 Identities=19% Similarity=0.298 Sum_probs=40.4
Q ss_pred HHHHHHHHhcC---CCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc-CCCceeec
Q 018827 105 MKVCEKVESKG---RTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWK 177 (350)
Q Consensus 105 ~KVcekVk~kg---~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK-sKk~IqW~ 177 (350)
.+|++.+++.+ .+|+.|+|..|- .-|+-|.-.+.-|+.-|+|.+ ..+.=.|.
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lg---------------------vs~~tV~~~L~~L~~~G~I~~~g~~~~~W~ 72 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLG---------------------TPKKEINRVLYSLAKKGKLQKEAGTPPLWK 72 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHC---------------------CCHHHHHHHHHHHHHHTSEEEECSSSCEEE
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCEEecCCCCCceE
Confidence 67889999998 999999999984 334556666778999999998 44446664
No 12
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=70.64 E-value=5.3 Score=29.69 Aligned_cols=53 Identities=13% Similarity=0.126 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc----CCCceeecC
Q 018827 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK----DKKEIQWKG 178 (350)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK----sKk~IqW~G 178 (350)
.+|.+.+.+.+..|..|+|+.|- .-+.-|+-+++.|+..|+|++ .+....|.-
T Consensus 3 ~~Il~~L~~~~~~s~~eLa~~lg---------------------vs~~tv~r~L~~L~~~GlI~~~~~~~gr~~~y~l 59 (81)
T 2htj_A 3 NEILEFLNRHNGGKTAEIAEALA---------------------VTDYQARYYLLLLEKAGMVQRSPLRRGMATYWFL 59 (81)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHT---------------------SCHHHHHHHHHHHHHHTSEEEECCSSSSSCEEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCEEEeccCCCCcEEEEE
Confidence 46778888888899999999873 345678899999999999995 344556643
No 13
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=70.53 E-value=16 Score=30.17 Aligned_cols=52 Identities=13% Similarity=0.103 Sum_probs=40.1
Q ss_pred ccchhhHHHHHHHHHh-cCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcC
Q 018827 98 RGLRQFSMKVCEKVES-KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~-kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKs 170 (350)
.||-.--..|+..+.. .+.+|..|+|+.|- .-+--|.-+++-|+.-|+|+|.
T Consensus 49 ~glt~~q~~vL~~L~~~~~~~t~~eLa~~l~---------------------i~~~tvs~~l~~Le~~GlV~r~ 101 (166)
T 3deu_A 49 LELTQTHWVTLHNIHQLPPDQSQIQLAKAIG---------------------IEQPSLVRTLDQLEDKGLISRQ 101 (166)
T ss_dssp TTCCHHHHHHHHHHHHSCSSEEHHHHHHHHT---------------------SCHHHHHHHHHHHHHTTSEEEC
T ss_pred cCCCHHHHHHHHHHHHcCCCCCHHHHHHHHC---------------------CCHhhHHHHHHHHHHCCCEEee
Confidence 4666666777777776 66788889888874 3456678899999999999993
No 14
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=69.69 E-value=15 Score=28.51 Aligned_cols=51 Identities=12% Similarity=0.092 Sum_probs=41.2
Q ss_pred ccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
.||-.--..|+..+...+.+|..|+|+.+- .-+--|+-+++-|+.-|+|++
T Consensus 25 ~~l~~~~~~iL~~l~~~~~~~~~ela~~l~---------------------~s~~tvs~~l~~L~~~glv~~ 75 (138)
T 3bpv_A 25 LNLTDAQVACLLRIHREPGIKQDELATFFH---------------------VDKGTIARTLRRLEESGFIER 75 (138)
T ss_dssp GTCCHHHHHHHHHHHHSTTCBHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHcCCCCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCEEe
Confidence 466666677888888888899999999873 235578889999999999998
No 15
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=69.19 E-value=2.6 Score=33.33 Aligned_cols=57 Identities=14% Similarity=0.323 Sum_probs=44.1
Q ss_pred chhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc-CCCceeecC
Q 018827 100 LRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 178 (350)
Q Consensus 100 LR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK-sKk~IqW~G 178 (350)
......++++.+++.| .|+.|+|.+|-- ....++||+|+ ||.-|+|.+ ..+--.|.=
T Consensus 15 ~~~~~~~IL~lL~~~g-~sa~eLAk~Lgi-----------------Sk~aVr~~L~~----Le~eG~I~~~~~~PP~W~~ 72 (82)
T 1oyi_A 15 NAEIVCEAIKTIGIEG-ATAAQLTRQLNM-----------------EKREVNKALYD----LQRSAMVYSSDDIPPRWFM 72 (82)
T ss_dssp SHHHHHHHHHHHSSST-EEHHHHHHHSSS-----------------CHHHHHHHHHH----HHHHTSSEECSSSSCEEES
T ss_pred hHHHHHHHHHHHHHcC-CCHHHHHHHHCc-----------------CHHHHHHHHHH----HHHCCCEEeCCCCCCccee
Confidence 3456678999999888 999999999741 12356777664 999999999 788899963
No 16
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=68.64 E-value=12 Score=30.13 Aligned_cols=52 Identities=12% Similarity=0.134 Sum_probs=41.3
Q ss_pred ccchhhHHHHHHHHHhcCC--CCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcC
Q 018827 98 RGLRQFSMKVCEKVESKGR--TTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~--TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKs 170 (350)
-||-..-..|...+.+.+. .|-.|+|+.|- .-+-.||-+++.|+..|+|++.
T Consensus 22 ~gLt~~e~~il~~L~~~~~~~~t~~eLa~~l~---------------------~s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 22 LNLTKADLNVMKSFLNEPDRWIDTDALSKSLK---------------------LDVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HTCCHHHHHHHHHHHHSTTCCEEHHHHHHHHT---------------------SCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCcCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCEEee
Confidence 3566666778888877655 88999998873 3467899999999999999984
No 17
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=68.18 E-value=23 Score=27.97 Aligned_cols=51 Identities=14% Similarity=0.133 Sum_probs=39.5
Q ss_pred ccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
.||-.--..|+..+...+.+|..|+|+.|- .-+--|+-+++-|+.-|+|++
T Consensus 36 ~~lt~~~~~iL~~l~~~~~~t~~ela~~l~---------------------~~~~~vs~~l~~Le~~Glv~r 86 (152)
T 3bj6_A 36 EGVTVGQRAILEGLSLTPGATAPQLGAALQ---------------------MKRQYISRILQEVQRAGLIER 86 (152)
T ss_dssp TTCCHHHHHHHHHHHHSTTEEHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHhCCCCCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCeee
Confidence 456555567777777777788888888773 335578889999999999998
No 18
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=67.47 E-value=37 Score=26.42 Aligned_cols=51 Identities=18% Similarity=0.151 Sum_probs=39.3
Q ss_pred ccchhhHHHHHHHH-HhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 98 RGLRQFSMKVCEKV-ESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 98 ~GLR~fS~KVcekV-k~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
.||-.--..|+..+ ...+.+|..|+|+.+- .-+--|+.+++-|+.-|+|++
T Consensus 33 ~~l~~~~~~iL~~l~~~~~~~t~~~la~~l~---------------------~s~~~vs~~l~~L~~~glv~r 84 (146)
T 2fbh_A 33 LGLSQARWLVLLHLARHRDSPTQRELAQSVG---------------------VEGPTLARLLDGLESQGLVRR 84 (146)
T ss_dssp GCCTTTHHHHHHHHHHCSSCCBHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHHHHHcCCCCCHHHHHHHhC---------------------CChhhHHHHHHHHHHCCCeee
Confidence 45555556677777 6677888888888763 345678899999999999998
No 19
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=67.23 E-value=16 Score=27.92 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=33.6
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
.+|...+ ..+..+..|+|+.|- .-+--|+-.++.|+..|+|++
T Consensus 24 ~~IL~~L-~~~~~~~~ela~~l~---------------------is~~tv~~~l~~L~~~gli~~ 66 (114)
T 2oqg_A 24 WEILTEL-GRADQSASSLATRLP---------------------VSRQAIAKHLNALQACGLVES 66 (114)
T ss_dssp HHHHHHH-HHSCBCHHHHHHHSS---------------------SCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHH-HcCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCeeE
Confidence 4566777 567788888888762 345668999999999999987
No 20
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=67.00 E-value=11 Score=27.32 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018827 184 LNDIEELKAERLGLRNRIEKKTAYLQELEDQ 214 (350)
Q Consensus 184 ~~~~~~Lk~El~~L~e~I~~K~~~LqEL~~q 214 (350)
..+++.|+.|..+|+.++....+++++|..+
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999998888888887654
No 21
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=66.92 E-value=22 Score=28.34 Aligned_cols=51 Identities=14% Similarity=0.182 Sum_probs=37.1
Q ss_pred cchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcCC
Q 018827 99 GLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDK 171 (350)
Q Consensus 99 GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKsK 171 (350)
||-.--..|...+ ..+.+|..|+|+.+- .-+--|--+++-|+.-|+|++.+
T Consensus 35 ~lt~~q~~iL~~l-~~~~~t~~eLa~~l~---------------------~~~~~vs~~l~~Le~~Glv~r~~ 85 (151)
T 3kp7_A 35 GISAEQSHVLNML-SIEALTVGQITEKQG---------------------VNKAAVSRRVKKLLNAELVKLEK 85 (151)
T ss_dssp TCCHHHHHHHHHH-HHSCBCHHHHHHHHC---------------------SCSSHHHHHHHHHHHTTSEEC--
T ss_pred CCCHHHHHHHHHH-HcCCcCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCEEeeC
Confidence 5555556677777 778888999988874 23345677899999999999743
No 22
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=65.88 E-value=21 Score=28.17 Aligned_cols=52 Identities=6% Similarity=0.183 Sum_probs=41.2
Q ss_pred ccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcC
Q 018827 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKs 170 (350)
.||-.--..|...+...+.+|..|+|+.+- .-+--|.-+++-|+.-|+|++.
T Consensus 33 ~~lt~~~~~vL~~l~~~~~~t~~eLa~~l~---------------------~~~~tvs~~l~~L~~~Glv~r~ 84 (142)
T 3ech_A 33 LDLTPPDVHVLKLIDEQRGLNLQDLGRQMC---------------------RDKALITRKIRELEGRNLVRRE 84 (142)
T ss_dssp CCCCHHHHHHHHHHHHTTTCCHHHHHHHHC------------------------CHHHHHHHHHHHTTSEEC-
T ss_pred CCCCHHHHHHHHHHHhCCCcCHHHHHHHhC---------------------CCHHHHHHHHHHHHHCCCEeec
Confidence 567777788888898888899999999874 2234578899999999999983
No 23
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=65.07 E-value=19 Score=29.23 Aligned_cols=51 Identities=14% Similarity=0.077 Sum_probs=40.3
Q ss_pred ccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
.||-.--..|...+...+.+|..|+|+.+- .-+--|.-+++-|+.-|+|+|
T Consensus 42 ~glt~~q~~iL~~l~~~~~~t~~eLa~~l~---------------------~~~~tvs~~l~~Le~~Glv~r 92 (162)
T 3k0l_A 42 LEISLPQFTALSVLAAKPNLSNAKLAERSF---------------------IKPQSANKILQDLLANGWIEK 92 (162)
T ss_dssp TTCCHHHHHHHHHHHHCTTCCHHHHHHHHT---------------------SCGGGHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCcCeEe
Confidence 466666677888888888888999988874 234457778999999999998
No 24
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=64.89 E-value=18 Score=28.52 Aligned_cols=52 Identities=13% Similarity=0.127 Sum_probs=42.4
Q ss_pred ccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcC
Q 018827 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKs 170 (350)
-||-.--..|...+...+.+|.+|+|+.+- .-+--|+-+++-|+.-|+|++.
T Consensus 36 ~~l~~~~~~iL~~l~~~~~~t~~ela~~l~---------------------~~~~tvs~~l~~Le~~Glv~r~ 87 (148)
T 3nrv_A 36 FGIGMTEWRIISVLSSASDCSVQKISDILG---------------------LDKAAVSRTVKKLEEKKYIEVN 87 (148)
T ss_dssp GTCCHHHHHHHHHHHHSSSBCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEC-
T ss_pred cCCCHHHHHHHHHHHcCCCCCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCEEee
Confidence 467777778888998889999999999874 2345688899999999999984
No 25
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=63.51 E-value=29 Score=27.80 Aligned_cols=52 Identities=17% Similarity=0.160 Sum_probs=39.1
Q ss_pred ccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcC
Q 018827 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKs 170 (350)
.||-.--..|...+...+..+..|+|+.|- .-+--|+-+++-|+.-|+|++.
T Consensus 45 ~~lt~~~~~iL~~l~~~~~~t~~ela~~l~---------------------is~~tvs~~l~~Le~~glv~r~ 96 (162)
T 2fa5_A 45 YGMAIPEWRVITILALYPGSSASEVSDRTA---------------------MDKVAVSRAVARLLERGFIRRE 96 (162)
T ss_dssp HCCCHHHHHHHHHHHHSTTCCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEC-
T ss_pred cCCCHHHHHHHHHHHhCCCCCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCEeee
Confidence 456555566777777777788888887763 3456788899999999999983
No 26
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=63.26 E-value=5.9 Score=29.47 Aligned_cols=44 Identities=7% Similarity=0.139 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
.+|...+...+..+..|+|+.|- .-+--||-.++.|+..|+|++
T Consensus 19 ~~iL~~L~~~~~~~~~ela~~l~---------------------is~~tvs~~l~~L~~~gli~~ 62 (100)
T 1ub9_A 19 LGIMIFLLPRRKAPFSQIQKVLD---------------------LTPGNLDSHIRVLERNGLVKT 62 (100)
T ss_dssp HHHHHHHHHHSEEEHHHHHHHTT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHhcCCcCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCEEE
Confidence 45666676677889999999873 234568999999999999997
No 27
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=63.24 E-value=26 Score=27.43 Aligned_cols=50 Identities=14% Similarity=0.222 Sum_probs=35.9
Q ss_pred ccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
.||-.--..|+..+. .+..|..|+|+.+- .-+--|+-+++-|+.-|+|++
T Consensus 33 ~~l~~~~~~iL~~l~-~~~~~~~ela~~l~---------------------~s~~tvs~~l~~Le~~glv~r 82 (146)
T 2gxg_A 33 LNLSYLDFLVLRATS-DGPKTMAYLANRYF---------------------VTQSAITASVDKLEEMGLVVR 82 (146)
T ss_dssp TTCCHHHHHHHHHHT-TSCBCHHHHHHHTT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHh-cCCcCHHHHHHHhC---------------------CCchhHHHHHHHHHHCCCEEe
Confidence 345444455666666 66777777777653 345678889999999999998
No 28
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=63.08 E-value=24 Score=28.48 Aligned_cols=51 Identities=10% Similarity=0.068 Sum_probs=39.8
Q ss_pred ccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
.||-.--..|...+...+.+|..|+|+.+- .-+--|.-+++-|+.-|+|+|
T Consensus 46 ~~lt~~q~~vL~~l~~~~~~t~~eLa~~l~---------------------~~~~tvs~~l~~Le~~Glv~r 96 (159)
T 3s2w_A 46 YGIGSGQFPFLMRLYREDGINQESLSDYLK---------------------IDKGTTARAIQKLVDEGYVFR 96 (159)
T ss_dssp GTCCTTTHHHHHHHHHSCSEEHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCEEE
Confidence 456555567777787778888999888874 334567889999999999998
No 29
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=62.77 E-value=23 Score=28.09 Aligned_cols=51 Identities=16% Similarity=0.222 Sum_probs=38.8
Q ss_pred ccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
.||-.--..|+..+...+..|..|+|+.|- .-+--|+-+++-|+.-|+|++
T Consensus 33 ~~l~~~~~~iL~~l~~~~~~t~~ela~~l~---------------------~s~~tvs~~l~~Le~~glv~r 83 (155)
T 1s3j_A 33 QGVTPAQLFVLASLKKHGSLKVSEIAERME---------------------VKPSAVTLMADRLEQKNLIAR 83 (155)
T ss_dssp TTCCHHHHHHHHHHHHHSEEEHHHHHHHHT---------------------SCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHcCCCCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCEee
Confidence 345444566777777777788888888763 345678899999999999998
No 30
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=62.30 E-value=29 Score=26.89 Aligned_cols=51 Identities=8% Similarity=0.079 Sum_probs=38.5
Q ss_pred ccchhhHHHHHHHHHhcC--CCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 98 RGLRQFSMKVCEKVESKG--RTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg--~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
.||-.--..|...+...+ .+|..|+|+.|- .-+--|+-+++-|+.-|+|++
T Consensus 30 ~~lt~~~~~iL~~l~~~~~~~~~~~ela~~l~---------------------~~~~tvs~~l~~Le~~Gli~r 82 (141)
T 3bro_A 30 YDLTGTQMTIIDYLSRNKNKEVLQRDLESEFS---------------------IKSSTATVLLQRMEIKKLLYR 82 (141)
T ss_dssp TTCCHHHHHHHHHHHHTTTSCCBHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCcCHHHHHHHHC---------------------CCcchHHHHHHHHHHCCCEEe
Confidence 355555566777777766 788888888773 234578889999999999998
No 31
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=61.63 E-value=27 Score=28.01 Aligned_cols=51 Identities=18% Similarity=0.146 Sum_probs=41.5
Q ss_pred ccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
.||-.--..|...+...+..|..|+|+.|- .-+--|+-+++-|+.-|+|++
T Consensus 48 ~~lt~~~~~iL~~l~~~~~~t~~ela~~l~---------------------is~~tvs~~l~~Le~~Gli~r 98 (162)
T 3cjn_A 48 LGLSTAKMRALAILSAKDGLPIGTLGIFAV---------------------VEQSTLSRALDGLQADGLVRR 98 (162)
T ss_dssp HTCCHHHHHHHHHHHHSCSEEHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHC---------------------CChhHHHHHHHHHHHCCCEEe
Confidence 466666677888888888899999998873 235568889999999999998
No 32
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=61.47 E-value=23 Score=29.11 Aligned_cols=51 Identities=10% Similarity=0.112 Sum_probs=40.9
Q ss_pred ccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
-||-.--..|...+...+.+|..|+|+.|- .-+--|+-+++-|+.-|+|+|
T Consensus 41 ~~lt~~~~~iL~~L~~~~~~t~~eLa~~l~---------------------is~~tvs~~l~~Le~~GlV~r 91 (168)
T 2nyx_A 41 ENITIPQFRTLVILSNHGPINLATLATLLG---------------------VQPSATGRMVDRLVGAELIDR 91 (168)
T ss_dssp SSCCHHHHHHHHHHHHHCSEEHHHHHHHHT---------------------SCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHhC---------------------CCHHHHHHHHHHHHHCCCEEe
Confidence 366666677888888778888999988873 345568889999999999998
No 33
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=61.46 E-value=8.7 Score=28.33 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=37.2
Q ss_pred HHHHHHHHhc--CCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 105 MKVCEKVESK--GRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 105 ~KVcekVk~k--g~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
..|.+.+.+. +..|..||++.|-.... ..-+==||=.|+.|+..|+|.+
T Consensus 20 ~~IL~~l~~~~~~~~s~~el~~~l~~~~~----------------~is~~TVyR~L~~L~~~Glv~~ 70 (83)
T 2fu4_A 20 LKILEVLQEPDNHHVSAEDLYKRLIDMGE----------------EIGLATVYRVLNQFDDAGIVTR 70 (83)
T ss_dssp HHHHHHHTSGGGSSBCHHHHHHHHHHTTC----------------CCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhCC----------------CCCHhhHHHHHHHHHHCCCeEE
Confidence 4578888764 68899999998865321 1234568999999999999998
No 34
>2v8f_C MDIA1, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus}
Probab=61.33 E-value=5.5 Score=25.33 Aligned_cols=21 Identities=38% Similarity=0.854 Sum_probs=14.2
Q ss_pred CCCCCCCCCCCCCCCCCcccc
Q 018827 322 PPPRANNSNRPPTSPPVPGIL 342 (350)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~ 342 (350)
|++...+....|+.||+||+-
T Consensus 3 PPPplPg~~giPpPpplPg~~ 23 (26)
T 2v8f_C 3 PPPPLPGVASIPPPPPLPGXX 23 (26)
T ss_pred CCCCCCCCCCCCCCCCCCCcc
Confidence 344445555678889999974
No 35
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=61.09 E-value=25 Score=27.21 Aligned_cols=51 Identities=4% Similarity=0.140 Sum_probs=40.1
Q ss_pred ccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
.||-.--..|+..+...+.+|..|+|+.+- .-+--|+-+++-|+.-|+|++
T Consensus 29 ~~l~~~~~~iL~~l~~~~~~~~~ela~~l~---------------------~~~~tvs~~l~~L~~~gli~r 79 (139)
T 3bja_A 29 YDISYVQFGVIQVLAKSGKVSMSKLIENMG---------------------CVPSNMTTMIQRMKRDGYVMT 79 (139)
T ss_dssp GTCCHHHHHHHHHHHHSCSEEHHHHHHHCS---------------------SCCTTHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHcCCcCHHHHHHHHC---------------------CChhHHHHHHHHHHHCCCeee
Confidence 466666677888888888889999888763 234568889999999999998
No 36
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=60.37 E-value=29 Score=27.79 Aligned_cols=51 Identities=14% Similarity=0.204 Sum_probs=40.5
Q ss_pred ccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
.||-.--..|...+...+.+|..|+|+.|- .-+--|+-+++.|+.-|+|++
T Consensus 40 ~~lt~~~~~iL~~l~~~~~~t~~ela~~l~---------------------is~~tvs~~l~~Le~~Gli~r 90 (154)
T 2eth_A 40 SDMKTTELYAFLYVALFGPKKMKEIAEFLS---------------------TTKSNVTNVVDSLEKRGLVVR 90 (154)
T ss_dssp HHSBHHHHHHHHHHHHHCCBCHHHHHHHTT---------------------SCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHcCCCCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCEEe
Confidence 456555567788888888899999999863 234578889999999999998
No 37
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=60.28 E-value=4.3 Score=38.86 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=27.8
Q ss_pred hccccchhhhhhhhhhhhccchhc-CCCceeecCCC
Q 018827 146 DEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKGLP 180 (350)
Q Consensus 146 DeKniKRRVYDItNVLegIgLIeK-sKk~IqW~G~~ 180 (350)
....-+.+|||+++.|+.-|+|++ ..+-.+|.-.+
T Consensus 41 ~~gv~~~~Vy~~L~~L~~~GlV~~~~g~p~~y~av~ 76 (342)
T 3qph_A 41 KSGIPYNRVYDTISSLKLRGFVTEIEGTPKVYAAYS 76 (342)
T ss_dssp STTSSSCSCCHHHHHHHHHTSEEEECCTTCEEEECC
T ss_pred HHCcCHHHHHHHHHHHHHCCCEEEEcCceeEEEEcC
Confidence 345778999999999999999998 55566666544
No 38
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=60.17 E-value=10 Score=30.28 Aligned_cols=50 Identities=12% Similarity=0.220 Sum_probs=39.0
Q ss_pred cchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 99 GLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 99 GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
||-.--..|+..+...+.+|..|+|+.+- .-+--|.-+++-|+.-|+|++
T Consensus 38 ~lt~~~~~iL~~l~~~~~~t~~eLa~~l~---------------------~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 38 GLTIQQLAMINVIYSTPGISVADLTKRLI---------------------ITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp TCCHHHHHHHHHHHHSTTEEHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCEEe
Confidence 55555566777787778888888888873 234578889999999999998
No 39
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=60.00 E-value=19 Score=27.90 Aligned_cols=66 Identities=15% Similarity=0.187 Sum_probs=48.8
Q ss_pred ccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc--CCCcee
Q 018827 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK--DKKEIQ 175 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK--sKk~Iq 175 (350)
.||-.--..|+..+...+..|-.|+|+.|-.+ ...-+--||-+++.|+.-|+|++ +.....
T Consensus 6 ~~lt~~~~~vL~~l~~~~~~t~~ela~~l~~~-----------------~~~s~~tv~~~l~~L~~~Glv~r~~~~rr~~ 68 (123)
T 1okr_A 6 YEISSAEWEVMNIIWMKKYASANNIIEEIQMQ-----------------KDWSPKTIRTLITRLYKKGFIDRKKDNKIFQ 68 (123)
T ss_dssp CCCCHHHHHHHHHHHHHSSEEHHHHHHHHHHH-----------------CCCCHHHHHHHHHHHHHHTSEEEEEETTEEE
T ss_pred ccCCHHHHHHHHHHHhCCCcCHHHHHHHHhcc-----------------CCCcHhhHHHHHHHHHHCCCeEEEecCCeEE
Confidence 45655567788888878889999999998643 11335679999999999999999 445555
Q ss_pred ecCCC
Q 018827 176 WKGLP 180 (350)
Q Consensus 176 W~G~~ 180 (350)
+.-+.
T Consensus 69 ~~~lT 73 (123)
T 1okr_A 69 YYSLV 73 (123)
T ss_dssp EEESS
T ss_pred EEEec
Confidence 54443
No 40
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=59.58 E-value=26 Score=27.52 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=41.4
Q ss_pred ccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
.||-.--..|+..+...+.+|..|+|+.+- .-+--|+-+++-|+.-|+|+|
T Consensus 33 ~~lt~~~~~iL~~l~~~~~~t~~eLa~~l~---------------------~~~~~vs~~l~~L~~~Glv~r 83 (143)
T 3oop_A 33 YDVTPEQWSVLEGIEANEPISQKEIALWTK---------------------KDTPTVNRIVDVLLRKELIVR 83 (143)
T ss_dssp SSSCHHHHHHHHHHHHHSSEEHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHHHHHcCCcCHHHHHHHHC---------------------CCHhhHHHHHHHHHHCCCeec
Confidence 466666677888888888899999999874 235568889999999999998
No 41
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=59.46 E-value=60 Score=25.22 Aligned_cols=51 Identities=14% Similarity=0.040 Sum_probs=40.3
Q ss_pred ccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
.||-.--..|...+...+.+|..|+|+.|- .-+--|+-+++-|+.-|+|++
T Consensus 25 ~~lt~~~~~iL~~l~~~~~~t~~~la~~l~---------------------~s~~~vs~~l~~Le~~gli~r 75 (144)
T 1lj9_A 25 LSLTRGQYLYLVRVCENPGIIQEKIAELIK---------------------VDRTTAARAIKRLEEQGFIYR 75 (144)
T ss_dssp GTCTTTHHHHHHHHHHSTTEEHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHCcCcCHHHHHHHHC---------------------CCHhHHHHHHHHHHHCCCEEe
Confidence 456555567777887788888999998874 235578899999999999998
No 42
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=58.27 E-value=32 Score=27.45 Aligned_cols=51 Identities=14% Similarity=0.067 Sum_probs=39.9
Q ss_pred ccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
.||-.--..|+..+...+..|..|+|+.+- .-+--|.-+++-|+.-|+|++
T Consensus 37 ~~lt~~q~~iL~~l~~~~~~~~~eLa~~l~---------------------~~~~~vs~~l~~L~~~Glv~r 87 (149)
T 4hbl_A 37 FGITYSQYLVMLTLWEENPQTLNSIGRHLD---------------------LSSNTLTPMLKRLEQSGWVKR 87 (149)
T ss_dssp TTCCHHHHHHHHHHHHSSSEEHHHHHHHHT---------------------CCHHHHHHHHHHHHHHTSEEC
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCEee
Confidence 455555567777887778888888888874 235567889999999999998
No 43
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=58.13 E-value=17 Score=26.70 Aligned_cols=61 Identities=13% Similarity=0.177 Sum_probs=45.0
Q ss_pred cchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc--CCCceee
Q 018827 99 GLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK--DKKEIQW 176 (350)
Q Consensus 99 GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK--sKk~IqW 176 (350)
+|-..-..|++.+...+..|..|||+.|-.+ . ..-+--||-+++.|+.-|+|++ +++.+.+
T Consensus 6 ~lt~~e~~vL~~L~~~~~~t~~ei~~~l~~~-~----------------~~s~~Tv~~~l~rL~~kGlv~r~~~gr~~~y 68 (82)
T 1p6r_A 6 QISDAELEVMKVIWKHSSINTNEVIKELSKT-S----------------TWSPKTIQTMLLRLIKKGALNHHKEGRVFVY 68 (82)
T ss_dssp CCCHHHHHHHHHHHTSSSEEHHHHHHHHHHH-S----------------CCCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHhhc-C----------------CccHHHHHHHHHHHHHCCCeEEEecCCEEEE
Confidence 4444446788888888899999999998632 0 1234569999999999999998 4454444
No 44
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=57.88 E-value=33 Score=26.98 Aligned_cols=51 Identities=8% Similarity=0.106 Sum_probs=39.7
Q ss_pred ccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
.||-.--..|...+...+..|..|+|+.|- .-+--|+-+++.|+.-|+|++
T Consensus 38 ~~l~~~~~~iL~~l~~~~~~t~~ela~~l~---------------------~~~~tvs~~l~~Le~~Glv~r 88 (150)
T 2rdp_A 38 YPITPPQFVALQWLLEEGDLTVGELSNKMY---------------------LACSTTTDLVDRMERNGLVAR 88 (150)
T ss_dssp SSSCHHHHHHHHHHHHHCSBCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHC---------------------CCchhHHHHHHHHHHCCCeee
Confidence 456555566777777777888888888763 345678889999999999998
No 45
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=57.71 E-value=23 Score=27.48 Aligned_cols=51 Identities=18% Similarity=0.272 Sum_probs=40.1
Q ss_pred ccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
.||-.--..|...+...+.+|..|+|+.+- .-+--|+-+++-|+.-|+|++
T Consensus 32 ~~lt~~~~~iL~~l~~~~~~t~~ela~~l~---------------------~s~~~vs~~l~~Le~~glv~r 82 (142)
T 2fbi_A 32 HGLTEQQWRVIRILRQQGEMESYQLANQAC---------------------ILRPSMTGVLARLERDGIVRR 82 (142)
T ss_dssp HTCCHHHHHHHHHHHHHCSEEHHHHHHHTT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHcCCCCHHHHHHHHC---------------------CCHhHHHHHHHHHHHCCCEEe
Confidence 456555667788887777889999888763 234578999999999999998
No 46
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=56.38 E-value=13 Score=29.80 Aligned_cols=52 Identities=13% Similarity=0.189 Sum_probs=38.8
Q ss_pred ccchhhHHHHHHHH-HhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcC
Q 018827 98 RGLRQFSMKVCEKV-ESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (350)
Q Consensus 98 ~GLR~fS~KVcekV-k~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKs 170 (350)
.||-.--..|+..+ ...+.++..|+|+.|- .-+--|.-+++-|+.-|+|++.
T Consensus 43 ~~l~~~~~~iL~~L~~~~~~~~~~ela~~l~---------------------i~~~tvs~~l~~Le~~Gli~r~ 95 (160)
T 3boq_A 43 TGLSLAKFDAMAQLARNPDGLSMGKLSGALK---------------------VTNGNVSGLVNRLIKDGMVVKA 95 (160)
T ss_dssp HSCCHHHHHHHHHHHHCTTCEEHHHHHHHCS---------------------SCCSCHHHHHHHHHHHTSEEEC
T ss_pred cCCCHHHHHHHHHHHHcCCCCCHHHHHHHHC---------------------CChhhHHHHHHHHHHCCCEEee
Confidence 45666666777777 5667788888888763 2345678899999999999983
No 47
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=54.67 E-value=11 Score=28.08 Aligned_cols=44 Identities=9% Similarity=-0.010 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
.+|...+...+..|..|+|+.|- .-+--|+-.++.|+..|+|++
T Consensus 27 ~~il~~l~~~~~~s~~ela~~l~---------------------is~~tvs~~l~~L~~~glv~~ 70 (99)
T 3cuo_A 27 LLILCMLSGSPGTSAGELTRITG---------------------LSASATSQHLARMRDEGLIDS 70 (99)
T ss_dssp HHHHHHHTTCCSEEHHHHHHHHC---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHhCCCcCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCEEE
Confidence 45677777776888999888873 234568889999999999998
No 48
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=53.59 E-value=9.2 Score=28.93 Aligned_cols=49 Identities=8% Similarity=0.155 Sum_probs=36.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc--CCCceee
Q 018827 106 KVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK--DKKEIQW 176 (350)
Q Consensus 106 KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK--sKk~IqW 176 (350)
+|...+.. +..+..|+|+.|- .-+.-|+-.++.|+..|||++ +++.+.|
T Consensus 27 ~Il~~L~~-~~~~~~ela~~l~---------------------is~~tvs~~L~~L~~~Glv~~~~~g~~~~y 77 (98)
T 3jth_A 27 QILCMLHN-QELSVGELCAKLQ---------------------LSQSALSQHLAWLRRDGLVTTRKEAQTVYY 77 (98)
T ss_dssp HHHHHTTT-SCEEHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEEECCTTCCEE
T ss_pred HHHHHHhc-CCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCeEEEEeCCEEEE
Confidence 46666665 7888999888873 345678999999999999987 4444443
No 49
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=51.67 E-value=51 Score=24.28 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018827 186 DIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQ 223 (350)
Q Consensus 186 ~~~~Lk~El~~L~e~I~~K~~~LqEL~~q~~aLknLie 223 (350)
.++.|+.+...|...-......+..|......|++|+.
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566777777777766777777777777777888764
No 50
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=51.17 E-value=21 Score=28.95 Aligned_cols=52 Identities=12% Similarity=0.144 Sum_probs=38.1
Q ss_pred ccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcC
Q 018827 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKs 170 (350)
.||-.--..|+..+...+.+|..|+|+.+- .-+--|.-+++-|+.-|+|+|.
T Consensus 49 ~glt~~q~~vL~~l~~~~~~t~~eLa~~l~---------------------~~~~~vs~~l~~Le~~Glv~r~ 100 (161)
T 3e6m_A 49 EKLPTPKLRLLSSLSAYGELTVGQLATLGV---------------------MEQSTTSRTVDQLVDEGLAARS 100 (161)
T ss_dssp HTCCHHHHHHHHHHHHHSEEEHHHHHHHTT---------------------CCHHHHHHHHHHHHHTTSEEEC
T ss_pred cCCCHHHHHHHHHHHhCCCCCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCEEee
Confidence 355555566777777777788888887663 3345677899999999999983
No 51
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=50.70 E-value=51 Score=25.55 Aligned_cols=51 Identities=16% Similarity=0.086 Sum_probs=39.3
Q ss_pred ccchhhHHHHHHHHHhcC--CCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 98 RGLRQFSMKVCEKVESKG--RTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg--~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
.||-.--..|...+...+ .+|..|+|+.+- .-+--|+-+++-|+.-|+|++
T Consensus 27 ~~lt~~~~~vL~~l~~~~~~~~t~~ela~~l~---------------------~~~~tvs~~l~~Le~~Gli~r 79 (139)
T 3eco_A 27 FDITNEQGHTLGYLYAHQQDGLTQNDIAKALQ---------------------RTGPTVSNLLRNLERKKLIYR 79 (139)
T ss_dssp GTCCHHHHHHHHHHHHSTTTCEEHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHhcCCCCcCHHHHHHHhC---------------------CCcccHHHHHHHHHHCCCEee
Confidence 456555567777777765 888888888874 335678889999999999998
No 52
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=50.48 E-value=14 Score=29.54 Aligned_cols=52 Identities=13% Similarity=0.155 Sum_probs=38.3
Q ss_pred ccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcC
Q 018827 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKs 170 (350)
.||-.--..|...+...+.+|..|+|+.+- .-+--|+-+++-|+.-|+|++.
T Consensus 39 ~~lt~~~~~iL~~l~~~~~~t~~ela~~l~---------------------i~~~tvs~~l~~Le~~Glv~r~ 90 (155)
T 3cdh_A 39 QGLRVPEWRVLACLVDNDAMMITRLAKLSL---------------------MEQSRMTRIVDQMDARGLVTRV 90 (155)
T ss_dssp TTCCHHHHHHHHHHSSCSCBCHHHHHHHTT---------------------CCHHHHHHHHHHHHHTTSEEEC
T ss_pred cCCCHHHHHHHHHHHHCCCcCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCEEec
Confidence 355555566677777667777877777653 3456789999999999999983
No 53
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=50.38 E-value=87 Score=24.33 Aligned_cols=52 Identities=17% Similarity=0.162 Sum_probs=43.0
Q ss_pred cCccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 96 SGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 96 ~~~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
..-||-.--..|...+...+ +|..|+|+.+- .-+--|.-+++-|+.-|+|++
T Consensus 32 ~~~~lt~~~~~iL~~l~~~~-~t~~eLa~~l~---------------------~s~~tvs~~l~~L~~~Glv~r 83 (146)
T 3tgn_A 32 SEVALTNTQEHILMLLSEES-LTNSELARRLN---------------------VSQAAVTKAIKSLVKEGMLET 83 (146)
T ss_dssp CSSCCCHHHHHHHHHHTTCC-CCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEC
T ss_pred hccCCCHHHHHHHHHHHhCC-CCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCeEe
Confidence 34677777788999999988 99999999984 234557779999999999998
No 54
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=49.86 E-value=15 Score=29.39 Aligned_cols=46 Identities=24% Similarity=0.257 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcC
Q 018827 104 SMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (350)
Q Consensus 104 S~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKs 170 (350)
-.++...++..+..++.|+|+.|- .-+.-|+..++-|+.-|+|.+-
T Consensus 6 ~~~il~~L~~~~~~~~~ela~~lg---------------------~s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 6 DKIILEILEKDARTPFTEIAKKLG---------------------ISETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHT---------------------SCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCEecc
Confidence 356788888889999999999983 2346677788999999999874
No 55
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=49.05 E-value=29 Score=26.91 Aligned_cols=51 Identities=14% Similarity=0.061 Sum_probs=39.0
Q ss_pred ccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
.||-.--..|...+...+..|..++|+.+- .-+--|+-+++-|+.-|+|++
T Consensus 30 ~~lt~~~~~iL~~l~~~~~~~~~~la~~l~---------------------~~~~tvs~~l~~L~~~gli~r 80 (138)
T 1jgs_A 30 LDITAAQFKVLCSIRCAACITPVELKKVLS---------------------VDLGALTRMLDRLVCKGWVER 80 (138)
T ss_dssp TTSCHHHHHHHHHHHHHSSBCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHhcCCCCHHHHHHHHC---------------------CChHHHHHHHHHHHHCCCEEe
Confidence 456555566777777777788888887653 345678899999999999998
No 56
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=48.51 E-value=19 Score=27.84 Aligned_cols=50 Identities=12% Similarity=0.121 Sum_probs=40.0
Q ss_pred cchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 99 GLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 99 GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
||-.--..|+..+...+..|..|+|+.+- .-+--|+-+++-|+.-|+|++
T Consensus 35 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~---------------------~~~~tvs~~l~~L~~~glv~r 84 (140)
T 2nnn_A 35 GLTPTQWAALVRLGETGPCPQNQLGRLTA---------------------MDAATIKGVVERLDKRGLIQR 84 (140)
T ss_dssp CCCHHHHHHHHHHHHHSSBCHHHHHHHTT---------------------CCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCEEe
Confidence 66666677788887777888888888763 345678899999999999998
No 57
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=48.48 E-value=17 Score=29.60 Aligned_cols=48 Identities=17% Similarity=0.283 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcC
Q 018827 102 QFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (350)
Q Consensus 102 ~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKs 170 (350)
.+-.++.+.++..+..++.|+|+.|- .-+.-|+..++-|+.-|+|.+-
T Consensus 5 ~~d~~il~~L~~~~~~s~~ela~~lg---------------------~s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 5 QIDLNIIEELKKDSRLSMRELGRKIK---------------------LSPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCeEEE
Confidence 34467889999999999999999984 2346677778999999999873
No 58
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=48.44 E-value=55 Score=25.85 Aligned_cols=52 Identities=12% Similarity=0.062 Sum_probs=35.0
Q ss_pred ccchhhHHHHHHHHHhc--CCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcC
Q 018827 98 RGLRQFSMKVCEKVESK--GRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~k--g~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKs 170 (350)
.||-.--..|...+... +.+|..|+|+.+- .-+--|.-+++-|+.-|+|+|.
T Consensus 37 ~glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~---------------------~~~~~vs~~l~~L~~~Glv~r~ 90 (148)
T 3jw4_A 37 LGLNSQQGRMIGYIYENQESGIIQKDLAQFFG---------------------RRGASITSMLQGLEKKGYIERR 90 (148)
T ss_dssp TTCCHHHHHHHHHHHHHTTTCCCHHHHHHC---------------------------CHHHHHHHHHHTTSBCCC
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHC---------------------CChhHHHHHHHHHHHCCCEEee
Confidence 45555556667767665 7788888887764 2334578899999999999983
No 59
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=46.51 E-value=19 Score=29.87 Aligned_cols=49 Identities=18% Similarity=0.279 Sum_probs=40.0
Q ss_pred chhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 100 LRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 100 LR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
|-..-.++...++..+..++.|+|+.|- .-+.-|+..++-|+.-|+|++
T Consensus 8 ld~~~~~il~~L~~~~~~s~~ela~~lg---------------------~s~~tv~~~l~~L~~~G~i~~ 56 (162)
T 2p5v_A 8 LDKTDIKILQVLQENGRLTNVELSERVA---------------------LSPSPCLRRLKQLEDAGIVRQ 56 (162)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHT---------------------SCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCEee
Confidence 5555678999999999999999999984 234556777899999999997
No 60
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=46.37 E-value=17 Score=29.60 Aligned_cols=44 Identities=11% Similarity=0.203 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
.++...++..+..++.|+|+.|- .-+--|+..++-|+.-|+|++
T Consensus 6 ~~il~~L~~~~~~~~~ela~~lg---------------------~s~~tv~~~l~~L~~~G~i~~ 49 (150)
T 2pn6_A 6 LRILKILQYNAKYSLDEIAREIR---------------------IPKATLSYRIKKLEKDGVIKG 49 (150)
T ss_dssp HHHHHHHTTCTTSCHHHHHHHHT---------------------SCHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCcEEE
Confidence 56788888899999999999984 234556777899999999997
No 61
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=45.97 E-value=52 Score=24.21 Aligned_cols=51 Identities=20% Similarity=0.241 Sum_probs=36.6
Q ss_pred cchhhHHHHHH-HHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcC
Q 018827 99 GLRQFSMKVCE-KVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (350)
Q Consensus 99 GLR~fS~KVce-kVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKs 170 (350)
||-.-...+.. .+...+..|..|+|+.+- .-+.-||-+++.|+.-|+|++.
T Consensus 18 ~l~~~~~~~l~~l~~~~~~~t~~ela~~l~---------------------is~~tv~~~l~~L~~~g~v~~~ 69 (109)
T 2d1h_A 18 KITDTDVAVLLKMVEIEKPITSEELADIFK---------------------LSKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp TCCHHHHHHHHHHHHHCSCEEHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHHHHHHcCCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCeEee
Confidence 44444444443 334477788989888773 4567799999999999999983
No 62
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=45.92 E-value=15 Score=28.77 Aligned_cols=49 Identities=8% Similarity=0.128 Sum_probs=35.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc--CCCceee
Q 018827 106 KVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK--DKKEIQW 176 (350)
Q Consensus 106 KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK--sKk~IqW 176 (350)
+|+..+. .+..+..|+|+.|- .-+.-|+-.++.|+..|||++ +++.+.|
T Consensus 29 ~IL~~L~-~~~~s~~eLa~~lg---------------------is~stvs~~L~~L~~~GlV~~~~~gr~~~y 79 (108)
T 2kko_A 29 QILDLLA-QGERAVEAIATATG---------------------MNLTTASANLQALKSGGLVEARREGTRQYY 79 (108)
T ss_dssp HHHHHHT-TCCEEHHHHHHHHT---------------------CCHHHHHHHHHHHHHHTSEEEEEETTEEEE
T ss_pred HHHHHHH-cCCcCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCeEEEEeCCEEEE
Confidence 4555665 37778888888763 345678999999999999987 4555554
No 63
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=45.59 E-value=38 Score=28.06 Aligned_cols=52 Identities=10% Similarity=0.060 Sum_probs=38.2
Q ss_pred ccchhhHHHHHHHHHhcCC---CCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcC
Q 018827 98 RGLRQFSMKVCEKVESKGR---TTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~---TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKs 170 (350)
.||-.--..|+..+...+. .|..|+|+.|- .-+--|+-+++-|+.-|+|++.
T Consensus 65 ~glt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~---------------------is~~tvs~~l~~Le~~GlV~r~ 119 (181)
T 2fbk_A 65 SGLNAAGWDLLLTLYRSAPPEGLRPTELSALAA---------------------ISGPSTSNRIVRLLEKGLIERR 119 (181)
T ss_dssp TTCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCS---------------------CCSGGGSSHHHHHHHHTSEECC
T ss_pred cCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCcCEEec
Confidence 4666666667777776554 78888887653 3345688899999999999983
No 64
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=45.25 E-value=43 Score=25.37 Aligned_cols=51 Identities=16% Similarity=0.247 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc--CCCceeec
Q 018827 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK--DKKEIQWK 177 (350)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK--sKk~IqW~ 177 (350)
.+|...+. .|..+..|+|+.|- .-+--|+-.+..|+..|||++ .++.+.|.
T Consensus 26 ~~Il~~L~-~~~~~~~ela~~l~---------------------is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~ 78 (102)
T 3pqk_A 26 LMLVCTLV-EGEFSVGELEQQIG---------------------IGQPTLSQQLGVLRESGIVETRRNIKQIFYR 78 (102)
T ss_dssp HHHHHHHH-TCCBCHHHHHHHHT---------------------CCTTHHHHHHHHHHHTTSEEEECSSSCCEEE
T ss_pred HHHHHHHH-hCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCeEEEEeCCEEEEE
Confidence 34556664 47788999888873 233468889999999999987 45545443
No 65
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=44.62 E-value=24 Score=28.68 Aligned_cols=56 Identities=18% Similarity=0.238 Sum_probs=41.3
Q ss_pred ccchhhH--HHHHHHHHh-cCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 98 RGLRQFS--MKVCEKVES-KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 98 ~GLR~fS--~KVcekVk~-kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
+|||.-. ..|.+.+.+ .+..|-.||.+.|-.+... .-+-=||-.|+.|+..|||.|
T Consensus 5 ~g~r~T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~----------------is~~TVYR~L~~L~e~Glv~~ 63 (131)
T 2o03_A 5 AGVRSTRQRAAISTLLETLDDFRSAQELHDELRRRGEN----------------IGLTTVYRTLQSMASSGLVDT 63 (131)
T ss_dssp THHHHHHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCC----------------CCHHHHHHHHHHHHTTTSEEE
T ss_pred ccCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCC----------------CCHhhHHHHHHHHHHCCCEEE
Confidence 5666555 348888875 4578888888887654221 334569999999999999999
No 66
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=44.46 E-value=22 Score=27.48 Aligned_cols=49 Identities=10% Similarity=0.274 Sum_probs=35.9
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc--CCCceee
Q 018827 106 KVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK--DKKEIQW 176 (350)
Q Consensus 106 KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK--sKk~IqW 176 (350)
+|...+. .+..+..|+|+.|- .-+--|+-.++.|+..|+|++ +++.+.|
T Consensus 30 ~IL~~L~-~~~~~~~ela~~l~---------------------is~stvs~~L~~L~~~Glv~~~~~gr~~~y 80 (106)
T 1r1u_A 30 RIMELLS-VSEASVGHISHQLN---------------------LSQSNVSHQLKLLKSVHLVKAKRQGQSMIY 80 (106)
T ss_dssp HHHHHHH-HCCBCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred HHHHHHH-hCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCeEEEEeCCEEEE
Confidence 4556665 56778989888873 234568889999999999987 4554444
No 67
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=44.29 E-value=34 Score=21.62 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018827 187 IEELKAERLGLRNRIEKKTAYL 208 (350)
Q Consensus 187 ~~~Lk~El~~L~e~I~~K~~~L 208 (350)
.++|-+|+++|++++++..+.|
T Consensus 3 adelykeledlqerlrklrkkl 24 (27)
T 3twe_A 3 ADELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4577788888888876555443
No 68
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=44.27 E-value=12 Score=29.33 Aligned_cols=51 Identities=18% Similarity=0.122 Sum_probs=38.6
Q ss_pred ccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
.||-.--..|+..+...+..|..|+|+.+- .-+--|+-+++-|+.-|+|++
T Consensus 33 ~~l~~~~~~iL~~l~~~~~~~~~ela~~l~---------------------~~~~tvs~~l~~L~~~gli~r 83 (142)
T 2bv6_A 33 YNLTYPQFLVLTILWDESPVNVKKVVTELA---------------------LDTGTVSPLLKRMEQVDLIKR 83 (142)
T ss_dssp HTCCHHHHHHHHHHHHSSEEEHHHHHHHTT---------------------CCTTTHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHcCCcCHHHHHHHHC---------------------CChhhHHHHHHHHHHCCCEEe
Confidence 355555566777777777788888888773 234568889999999999998
No 69
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=44.16 E-value=22 Score=29.06 Aligned_cols=49 Identities=16% Similarity=0.246 Sum_probs=39.6
Q ss_pred chhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 100 LRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 100 LR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
|-..-.++.+.++..+..++.|+|+.|- .-+.-|+..++-|+.-|+|.+
T Consensus 6 ld~~d~~il~~L~~~~~~s~~ela~~lg---------------------~s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 6 IDNLDRGILEALMGNARTAYAELAKQFG---------------------VSPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp CCHHHHHHHHHHHHCTTSCHHHHHHHHT---------------------SCHHHHHHHHHHHHHHTSEEE
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHcCCcce
Confidence 4455678899999999999999999984 234556667899999999997
No 70
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=44.00 E-value=65 Score=26.14 Aligned_cols=51 Identities=12% Similarity=0.100 Sum_probs=34.8
Q ss_pred ccchhhHHHHHHHHHhc--CCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 98 RGLRQFSMKVCEKVESK--GRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~k--g~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
.||-.--..|+..+... +.+|.+|+|+.|. .-+--|.-+++-|+.-|+|+|
T Consensus 42 ~glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~---------------------~~~~tvs~~l~~Le~~Glv~r 94 (168)
T 3u2r_A 42 FELSAQQYNTLRLLRSVHPEGMATLQIADRLI---------------------SRAPDITRLIDRLDDRGLVLR 94 (168)
T ss_dssp TTCCHHHHHHHHHHHHHTTSCEEHHHHHHHC------------------------CTHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHhcCCCCcCHHHHHHHHC---------------------CChhhHHHHHHHHHHCCCEee
Confidence 45555555566666663 4677777777764 234467789999999999998
No 71
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=43.96 E-value=18 Score=27.20 Aligned_cols=54 Identities=15% Similarity=0.118 Sum_probs=39.4
Q ss_pred cchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 99 GLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 99 GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
||-.--..|...+...+..+..|+|.+|...+ ..-+--|+-+++-|+.-|+|++
T Consensus 5 ~lt~~q~~iL~~l~~~~~~~~~el~~~la~~l-----------------~is~~tvs~~l~~Le~~gli~r 58 (99)
T 1tbx_A 5 PFFYPEAIVLAYLYDNEGIATYDLYKKVNAEF-----------------PMSTATFYDAKKFLIQEGFVKE 58 (99)
T ss_dssp SSBCHHHHHHHHHTTCTTCBHHHHHHHHHTTS-----------------CCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHHHHc-----------------CCCHHHHHHHHHHHHHCCCEEE
Confidence 45444566777787788889988866653211 1345678899999999999999
No 72
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=43.76 E-value=18 Score=27.42 Aligned_cols=44 Identities=18% Similarity=0.141 Sum_probs=33.2
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcCCC
Q 018827 106 KVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKK 172 (350)
Q Consensus 106 KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKsKk 172 (350)
+|.+.+ .+..+..|+|+.|- .-+--||-.++.|+..|+|++.+.
T Consensus 35 ~Il~~L--~~~~~~~eLa~~l~---------------------is~~tv~~~L~~L~~~Glv~~~~g 78 (96)
T 1y0u_A 35 KILRML--DKGRSEEEIMQTLS---------------------LSKKQLDYHLKVLEAGFCIERVGE 78 (96)
T ss_dssp HHHHHH--HTTCCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHH--cCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCEEEECC
Confidence 466666 46678888887762 345668999999999999998444
No 73
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=43.56 E-value=8.6 Score=30.83 Aligned_cols=43 Identities=12% Similarity=0.067 Sum_probs=34.6
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 106 KVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 106 KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
+|...+...+..+..|+|+.|- .-+--|+-.++.|+..|+|++
T Consensus 46 ~IL~~L~~~~~~s~~eLa~~l~---------------------is~stvs~~L~~L~~~Glv~~ 88 (122)
T 1u2w_A 46 KITYALCQDEELCVCDIANILG---------------------VTIANASHHLRTLYKQGVVNF 88 (122)
T ss_dssp HHHHHHHHSSCEEHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHCCCcCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCeEE
Confidence 5677777678889999998873 234668889999999999987
No 74
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=43.03 E-value=45 Score=25.97 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=21.7
Q ss_pred cccchhhhhhhhhhhhccchhcCCCc
Q 018827 148 KNIRRRVYDALNVLMAMDIISKDKKE 173 (350)
Q Consensus 148 KniKRRVYDItNVLegIgLIeKsKk~ 173 (350)
..--|++-..++.|+.-|+|++....
T Consensus 31 ~ls~~~~~~~l~~L~~~GLI~~~~~~ 56 (95)
T 1r7j_A 31 NLSYALTGRYIKMLMDLEIIRQEGKQ 56 (95)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEETTE
T ss_pred CcCHHHHHHHHHHHHHCCCeEEECCe
Confidence 35568999999999999999996544
No 75
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=42.80 E-value=19 Score=29.36 Aligned_cols=49 Identities=31% Similarity=0.489 Sum_probs=39.8
Q ss_pred chhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 100 LRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 100 LR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
|-.+-.++...++..+..++.|+|+.|- .-+..|...++-|+.-|+|.+
T Consensus 7 ld~~d~~il~~L~~~~~~s~~ela~~lg---------------------~s~~tv~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 7 LDRVDMQLVKILSENSRLTYRELADILN---------------------TTRQRIARRIDKLKKLGIIRK 55 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHTT---------------------SCHHHHHHHHHHHHHHTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCEEE
Confidence 4455678899999999999999999874 234567777899999999987
No 76
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=42.80 E-value=15 Score=28.63 Aligned_cols=44 Identities=14% Similarity=0.208 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
..|...+. .+..+++|+|+.|- ..-+.-|+..++.|+..|||+|
T Consensus 17 ~~IL~~L~-~~~~~~~eLa~~l~--------------------~is~~tls~~L~~Le~~GlI~r 60 (107)
T 2hzt_A 17 XVILXHLT-HGKKRTSELKRLMP--------------------NITQKMLTQQLRELEADGVINR 60 (107)
T ss_dssp HHHHHHHT-TCCBCHHHHHHHCT--------------------TSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHH-hCCCCHHHHHHHhc--------------------CCCHHHHHHHHHHHHHCCCEEE
Confidence 34555555 68889999988761 1345678999999999999998
No 77
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=42.78 E-value=61 Score=25.24 Aligned_cols=44 Identities=14% Similarity=0.218 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
..|...+.. +.+++.|+|+.|- ..-+.-|+..++.|+.-|||++
T Consensus 25 ~~IL~~L~~-~~~~~~eLa~~l~--------------------~is~~tvs~~L~~Le~~GlI~r 68 (112)
T 1z7u_A 25 LSLMDELFQ-GTKRNGELMRALD--------------------GITQRVLTDRLREMEKDGLVHR 68 (112)
T ss_dssp HHHHHHHHH-SCBCHHHHHHHST--------------------TCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHh-CCCCHHHHHHHhc--------------------cCCHHHHHHHHHHHHHCCCEEE
Confidence 445555554 7788999888871 1345779999999999999998
No 78
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=41.65 E-value=25 Score=28.79 Aligned_cols=50 Identities=14% Similarity=0.225 Sum_probs=39.5
Q ss_pred chhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcC
Q 018827 100 LRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (350)
Q Consensus 100 LR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKs 170 (350)
|-..-.++...++..+..++.|+|++|- .-+.-|+..++-|+.-|+|.+-
T Consensus 5 ld~~~~~il~~L~~~~~~s~~ela~~lg---------------------~s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 5 LDEIDKKIIKILQNDGKAPLREISKITG---------------------LAESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHC---------------------SCHHHHHHHHHHHHHHTSSCCC
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCeEEE
Confidence 4445568899999999999999999984 2234566678999999999873
No 79
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=41.56 E-value=25 Score=29.89 Aligned_cols=49 Identities=14% Similarity=0.252 Sum_probs=39.4
Q ss_pred chhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 100 LRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 100 LR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
|--+-.++...++..+..++.|+|+.|- .-+--|...++-|+.-|+|++
T Consensus 15 ld~~d~~IL~~L~~~~~~s~~eLA~~lg---------------------lS~~tv~~~l~~L~~~G~I~~ 63 (171)
T 2ia0_A 15 LDDLDRNILRLLKKDARLTISELSEQLK---------------------KPESTIHFRIKKLQERGVIER 63 (171)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHT---------------------SCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCEEe
Confidence 5556678999999999999999999984 223456666889999999986
No 80
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=40.86 E-value=40 Score=26.54 Aligned_cols=51 Identities=12% Similarity=0.103 Sum_probs=39.2
Q ss_pred ccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
.||-.--..|+..+...+.+|.+|+|+.+- .-+--|.-+++-|+.-|+|+|
T Consensus 32 ~glt~~q~~vL~~l~~~~~~t~~eLa~~l~---------------------~~~~tvs~~l~~L~~~Glv~r 82 (140)
T 3hsr_A 32 YDLTYTGYIVLMAIENDEKLNIKKLGERVF---------------------LDSGTLTPLLKKLEKKDYVVR 82 (140)
T ss_dssp GTCCHHHHHHHHHSCTTCEEEHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHcCCcCHHHHHHHHC---------------------CChhhHHHHHHHHHHCCCeEe
Confidence 355555566777777778888888888874 345667889999999999998
No 81
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=40.86 E-value=27 Score=28.49 Aligned_cols=49 Identities=16% Similarity=0.199 Sum_probs=38.7
Q ss_pred chhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 100 LRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 100 LR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
|-..-.++...++..+..++.|+|+.|- .-+.-|+..++-|+.-|+|.+
T Consensus 5 ld~~~~~iL~~L~~~~~~s~~ela~~lg---------------------~s~~tv~~~l~~L~~~G~i~~ 53 (150)
T 2w25_A 5 LDDIDRILVRELAADGRATLSELATRAG---------------------LSVSAVQSRVRRLESRGVVQG 53 (150)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHT---------------------SCHHHHHHHHHHHHHTTSEEE
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCEEE
Confidence 3344567888899899999999999984 234557777899999999976
No 82
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=40.38 E-value=76 Score=25.03 Aligned_cols=51 Identities=16% Similarity=0.102 Sum_probs=34.6
Q ss_pred ccchhhHHHHHHHHHhc-CCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 98 RGLRQFSMKVCEKVESK-GRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~k-g~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
.||-.--..|...+... +..|..|+|+.+- .-+--|.-+++-|+.-|+|+|
T Consensus 35 ~glt~~q~~vL~~l~~~~~~~t~~eLa~~l~---------------------i~~~tvs~~l~~Le~~Glv~r 86 (150)
T 3fm5_A 35 TGLRVRSYSVLVLACEQAEGVNQRGVAATMG---------------------LDPSQIVGLVDELEERGLVVR 86 (150)
T ss_dssp GTCCHHHHHHHHHHHHSTTCCCSHHHHHHHT---------------------CCHHHHHHHHHHHHTTTSEEC
T ss_pred cCCCHHHHHHHHHHHhCCCCcCHHHHHHHHC---------------------CCHhHHHHHHHHHHHCCCEEe
Confidence 34544445556666443 3567777777764 345667889999999999998
No 83
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus KT}
Probab=40.28 E-value=58 Score=32.85 Aligned_cols=22 Identities=23% Similarity=0.522 Sum_probs=17.8
Q ss_pred ccceEEEEcCCCc----EEEeccCCC
Q 018827 240 ALPFILVQTRPHA----TVEVEISED 261 (350)
Q Consensus 240 ~LPfIaVkAP~~T----~LEVp~peD 261 (350)
.-||++|||..|| .+.|-..+|
T Consensus 276 ~~PfV~VKADaGTYGMGImtV~s~~e 301 (432)
T 3k1t_A 276 QEPFVIVKADAGTYGMGIMTVKSADD 301 (432)
T ss_dssp SCCCEEEEEECGGGCEEEEEESSGGG
T ss_pred CCceEEEEcCCCCCCceEEEecCHHH
Confidence 3489999999999 577777666
No 84
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=39.76 E-value=45 Score=26.29 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=34.4
Q ss_pred cchhhHHHHHHHHHhc--CCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 99 GLRQFSMKVCEKVESK--GRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 99 GLR~fS~KVcekVk~k--g~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
||-.--..|+..+... +..|.+|+|+.|- .-+--|.-+++-|+.-|+|+|
T Consensus 34 ~lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~---------------------~~~~tvs~~l~~Le~~Glv~r 85 (127)
T 2frh_A 34 SISFEEFAVLTYISENKEKEYYLKDIINHLN---------------------YKQPQVVKAVKILSQEDYFDK 85 (127)
T ss_dssp CCCHHHHHHHHHHHHTCCSEEEHHHHHHHSS---------------------SHHHHHHHHHHHHHHTTSSCC
T ss_pred CCCHHHHHHHHHHHhccCCCcCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCEEe
Confidence 4444445555555555 5666666666553 345678889999999999998
No 85
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=37.99 E-value=97 Score=24.00 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018827 187 IEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLI 222 (350)
Q Consensus 187 ~~~Lk~El~~L~e~I~~K~~~LqEL~~q~~aLknLi 222 (350)
+.+|+..+.+..+.|+++...+.+|..+......+|
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI 56 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELI 56 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666665555555555555555554443333333
No 86
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=37.76 E-value=1.1e+02 Score=22.39 Aligned_cols=36 Identities=17% Similarity=0.165 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018827 187 IEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLI 222 (350)
Q Consensus 187 ~~~Lk~El~~L~e~I~~K~~~LqEL~~q~~aLknLi 222 (350)
+..|+.+...|...-......+..|..+...|+.++
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666665555555555566665555565554
No 87
>3gva_A Alkyltransferase-like protein 1; alkylated DNA damage repair, DNA damage, DNA repair, DNA- binding, DNA binding protein; 2.00A {Schizosaccharomyces pombe} PDB: 3gx4_X* 3gyh_X* 4enj_A* 4enk_A* 4enm_A* 4enn_A* 4hdu_A* 4hdv_A*
Probab=36.89 E-value=19 Score=29.99 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHh---cCCCCHHHHHHHHH
Q 018827 102 QFSMKVCEKVES---KGRTTYNEVADELV 127 (350)
Q Consensus 102 ~fS~KVcekVk~---kg~TTYnEVAdeLV 127 (350)
-|..+|.+.|.+ ..++||.+||..|-
T Consensus 5 ~Fq~~Vw~~l~~IP~G~v~TYg~IA~~~G 33 (116)
T 3gva_A 5 EFYTKVYDAVCEIPYGKVSTYGEIARYVG 33 (116)
T ss_dssp HHHHHHHHHHTTSCTTCBBCHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCCCeEeHHHHHHHhC
Confidence 578899999988 57999999998863
No 88
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=36.85 E-value=41 Score=26.05 Aligned_cols=50 Identities=14% Similarity=0.285 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc--CCCceee
Q 018827 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK--DKKEIQW 176 (350)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK--sKk~IqW 176 (350)
.+|...+.+ +..+..|+|+.|- .-+--|+-.++.|+..|+|.+ +++.+.+
T Consensus 35 ~~il~~L~~-~~~s~~ela~~l~---------------------is~stvsr~l~~Le~~Glv~~~~~~r~~~~ 86 (119)
T 2lkp_A 35 LMILTQLRN-GPLPVTDLAEAIG---------------------MEQSAVSHQLRVLRNLGLVVGDRAGRSIVY 86 (119)
T ss_dssp HHHHHHHHH-CCCCHHHHHHHHS---------------------SCHHHHHHHHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHH-CCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCEEEEecCCEEEE
Confidence 345555655 6778888888873 234567888999999999987 4554544
No 89
>2kif_A O6-methylguanine-DNA methyltransferase; methods development, solution structure, DNA base repair methylguanine methyltransferase; NMR {Vibrio parahaemolyticus AQ3810} PDB: 2kim_A
Probab=36.79 E-value=19 Score=29.58 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHh---cCCCCHHHHHHHHH
Q 018827 102 QFSMKVCEKVES---KGRTTYNEVADELV 127 (350)
Q Consensus 102 ~fS~KVcekVk~---kg~TTYnEVAdeLV 127 (350)
-|..+|.+.|.+ ..++||.+||..|-
T Consensus 3 ~F~~~V~~~l~~IP~G~v~TYg~iA~~~G 31 (108)
T 2kif_A 3 QFLVQIFAVIHQIPKGKVSTYGEIAKMAG 31 (108)
T ss_dssp HHHHHHHHHHTTCCTTCBEEHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCCcEeHHHHHHHhC
Confidence 477889999988 57899999998863
No 90
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=36.46 E-value=33 Score=26.57 Aligned_cols=50 Identities=14% Similarity=0.118 Sum_probs=38.9
Q ss_pred cchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 99 GLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 99 GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
||-.--..|...+...+.+|..|+|+.+- .-+--|+.+++-|+.-|+|++
T Consensus 28 ~l~~~~~~iL~~l~~~~~~~~~ela~~l~---------------------is~~~vs~~l~~L~~~gli~~ 77 (142)
T 3bdd_A 28 GISLTRYSILQTLLKDAPLHQLALQERLQ---------------------IDRAAVTRHLKLLEESGYIIR 77 (142)
T ss_dssp SSCHHHHHHHHHHHHHCSBCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCEEe
Confidence 55555566777777777888888888763 345568889999999999998
No 91
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=36.32 E-value=1.1e+02 Score=22.02 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018827 187 IEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNL 221 (350)
Q Consensus 187 ~~~Lk~El~~L~e~I~~K~~~LqEL~~q~~aLknL 221 (350)
++.|+.+...|..........+..|..+...|+.+
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555544444445555555555555544
No 92
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=35.06 E-value=39 Score=28.72 Aligned_cols=51 Identities=14% Similarity=0.210 Sum_probs=39.5
Q ss_pred cchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcC
Q 018827 99 GLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (350)
Q Consensus 99 GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKs 170 (350)
.|-..-.++.+.++..+..++.|+|++|- .-..-|+.-++-|+.-|+|++-
T Consensus 24 ~ld~~d~~IL~~L~~~~~~s~~eLA~~lg---------------------lS~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 24 PLDEIDKKIIKILQNDGKAPLREISKITG---------------------LAESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp CCCHHHHHHHHHHHHCTTCCHHHHHHHHT---------------------SCHHHHHHHHHHHHHTTSSCCC
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCeEee
Confidence 35566678999999999999999999984 1233455557899999999873
No 93
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=34.90 E-value=38 Score=26.60 Aligned_cols=49 Identities=12% Similarity=0.220 Sum_probs=37.3
Q ss_pred cchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 99 GLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 99 GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
||-.--..|...+...+. |.+|+|+.+- .-+--|.-+++-|+.-|+|++
T Consensus 34 ~lt~~~~~iL~~l~~~~~-~~~~la~~l~---------------------~~~~tvs~~l~~Le~~Glv~r 82 (144)
T 3f3x_A 34 NLSYLDFSILKATSEEPR-SMVYLANRYF---------------------VTQSAITAAVDKLEAKGLVRR 82 (144)
T ss_dssp SCCHHHHHHHHHHHHSCE-EHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHHHHHCCC-CHHHHHHHHC---------------------CChhHHHHHHHHHHHCCCEEe
Confidence 555555667777777766 8888888864 334567889999999999998
No 94
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=34.71 E-value=30 Score=31.56 Aligned_cols=52 Identities=17% Similarity=0.226 Sum_probs=43.3
Q ss_pred ccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcC
Q 018827 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKs 170 (350)
.||-....+|.+.+.+.+..|..|+|+.|- .-|.-|+-+++.|+..|+|++.
T Consensus 148 ~~L~~~~~~IL~~L~~~~~~s~~eLA~~lg---------------------lsksTv~r~L~~Le~~GlV~r~ 199 (244)
T 2wte_A 148 RDYSREEMKLLNVLYETKGTGITELAKMLD---------------------KSEKTLINKIAELKKFGILTQK 199 (244)
T ss_dssp SCCCHHHHHHHHHHHHHTCBCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCEEEe
Confidence 366667778888888888899999999984 3466799999999999999995
No 95
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=33.40 E-value=46 Score=27.10 Aligned_cols=56 Identities=20% Similarity=0.253 Sum_probs=40.0
Q ss_pred ccchhhH--HHHHHHHHhc--CCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 98 RGLRQFS--MKVCEKVESK--GRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 98 ~GLR~fS--~KVcekVk~k--g~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
.|||.-. ..|.+.+.+. +..|-.||.+.|-.++.. .-+-=||-.|+.|+..|||.|
T Consensus 12 ~g~r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~----------------is~aTVYR~L~~L~e~Glv~~ 71 (136)
T 1mzb_A 12 AGLKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGED----------------VGLATVYRVLTQFEAAGLVVR 71 (136)
T ss_dssp TTCCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCC----------------CCHHHHHHHHHHHHHHTSEEE
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCC----------------CCHHHHHHHHHHHHHCCcEEE
Confidence 4565544 3478888763 577888888887654221 234569999999999999999
No 96
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=32.95 E-value=37 Score=28.05 Aligned_cols=56 Identities=18% Similarity=0.299 Sum_probs=38.6
Q ss_pred ccchhhH--HHHHHHHHh-cCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 98 RGLRQFS--MKVCEKVES-KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 98 ~GLR~fS--~KVcekVk~-kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
.|||.-. ..|.+.+.+ .+..|-.||.+.|-.++. ..-+-=||-.|+.|+..|||.|
T Consensus 16 ~g~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~----------------~is~aTVYR~L~~L~e~Glv~~ 74 (145)
T 2fe3_A 16 TGVRITPQRHAILEYLVNSMAHPTADDIYKALEGKFP----------------NMSVATVYNNLRVFRESGLVKE 74 (145)
T ss_dssp TTCCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCT----------------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCC----------------CCChhhHHHHHHHHHHCCCEEE
Confidence 4555544 347787766 456777777777653211 1234569999999999999999
No 97
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=32.55 E-value=99 Score=25.05 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=23.9
Q ss_pred hhcCCCceeecCCCCCC----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018827 167 ISKDKKEIQWKGLPRTS----LNDIEELKAERLGLRNRIEKKTAYLQELEDQF 215 (350)
Q Consensus 167 IeKsKk~IqW~G~~~~s----~~~~~~Lk~El~~L~e~I~~K~~~LqEL~~q~ 215 (350)
|....+-+-|.|.+-.. ..-.+-|+..+..+.+.++...+.+.++..+.
T Consensus 66 i~~~~~V~v~lG~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i 118 (133)
T 1fxk_C 66 LKDTSEVIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIM 118 (133)
T ss_dssp CCSTTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCEEEEEcCCCEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345577899986321 12223344444444445554455555444443
No 98
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=32.39 E-value=33 Score=26.23 Aligned_cols=45 Identities=18% Similarity=0.241 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcC
Q 018827 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (350)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKs 170 (350)
.+|.+.|+++|..+.+|+|++|-. .+.+||| -|+.|+..|+|.|.
T Consensus 5 ~~Il~~L~~~g~vsv~eLa~~l~V-----------------S~~TIRr----dL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 5 IQVRDLLALRGRMEAAQISQTLNT-----------------PQPMINA----MLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHHSCSBCHHHHHHHTTC-----------------CHHHHHH----HHHHHHHHTSEEEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCc-----------------CHHHHHH----HHHHHHHCCCEEEe
Confidence 467899999999999999998741 2346666 47999999999884
No 99
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=31.17 E-value=33 Score=27.14 Aligned_cols=49 Identities=14% Similarity=0.259 Sum_probs=34.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc--CCCceee
Q 018827 106 KVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK--DKKEIQW 176 (350)
Q Consensus 106 KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK--sKk~IqW 176 (350)
+|...+. .+..+..|+|+.|- .-+.-|+-.++.|+..|||++ +++.+.|
T Consensus 25 ~IL~~L~-~~~~~~~eLa~~lg---------------------is~stvs~~L~~L~~~GlV~~~~~gr~~~y 75 (118)
T 2jsc_A 25 RILVALL-DGVCYPGQLAAHLG---------------------LTRSNVSNHLSCLRGCGLVVATYEGRQVRY 75 (118)
T ss_dssp HHHHHHH-TTCCSTTTHHHHHS---------------------SCHHHHHHHHHHHTTTTSEEEEECSSSEEE
T ss_pred HHHHHHH-cCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCceEEEEECCEEEE
Confidence 4555555 45567777777762 345678999999999999987 5555555
No 100
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=31.11 E-value=47 Score=27.29 Aligned_cols=58 Identities=16% Similarity=0.047 Sum_probs=39.3
Q ss_pred cCccchhhH--HHHHHHHHh-cCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 96 SGRGLRQFS--MKVCEKVES-KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 96 ~~~GLR~fS--~KVcekVk~-kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
...|||.=. ..|.+.+.+ .+..|-.||.+.|-.++.. .-+-=||-.|+.|+..|||.|
T Consensus 6 r~~g~r~T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~----------------is~aTVYR~L~~L~e~Glv~~ 66 (139)
T 3mwm_A 6 PPVKGRATRQRAAVSAALQEVEEFRSAQELHDMLKHKGDA----------------VGLTTVYRTLQSLADAGEVDV 66 (139)
T ss_dssp ----CHHHHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCC----------------CCHHHHHHHHHHHHHTTSSEE
T ss_pred CCCCCccCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCC----------------CCHHHHHHHHHHHHHCCCEEE
Confidence 346777655 347888876 4677877887777643221 234569999999999999999
No 101
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=30.70 E-value=44 Score=27.81 Aligned_cols=46 Identities=7% Similarity=0.145 Sum_probs=35.4
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 103 FSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 103 fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
+=.++.+.+++.++.+|.|+|++|- .-.--|..-++-|+.-|+|.+
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~lg---------------------~s~~tv~~rl~~L~~~g~i~~ 49 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKVG---------------------LSTTPCWRRIQKMEEDGVIRR 49 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCeee
Confidence 3467899999999999999999984 112234444688999999987
No 102
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=30.59 E-value=38 Score=28.11 Aligned_cols=56 Identities=23% Similarity=0.304 Sum_probs=38.0
Q ss_pred ccchhhH--HHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 98 RGLRQFS--MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 98 ~GLR~fS--~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
+|||.-. ..|.+.+.+.+..|-.||.+.|-.++. ..-+==||=.|+.|+..|||.|
T Consensus 13 ~g~r~T~qR~~Il~~l~~~~h~ta~ei~~~l~~~~~----------------~is~~TVYR~L~~L~e~Glv~~ 70 (145)
T 3eyy_A 13 RGYRLTPQRQLVLEAVDTLEHATPDDILGEVRKTAS----------------GINISTVYRTLELLEELGLVSH 70 (145)
T ss_dssp TTCCCCHHHHHHHHHHHHHSSBCHHHHHHHHHTTCT----------------TCCHHHHHHHHHHHHHHTSEEE
T ss_pred cCCCcCHHHHHHHHHHHhcCCCCHHHHHHHHHhhCC----------------CCCHhHHHHHHHHHHHCCcEEE
Confidence 5666544 347787777557776666666543211 1234569999999999999999
No 103
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=29.50 E-value=1.3e+02 Score=23.47 Aligned_cols=29 Identities=14% Similarity=0.312 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018827 185 NDIEELKAERLGLRNRIEKKTAYLQELED 213 (350)
Q Consensus 185 ~~~~~Lk~El~~L~e~I~~K~~~LqEL~~ 213 (350)
..++.|+.|+..|+..|+...-+|.++..
T Consensus 27 ~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 27 QQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44556666666666666555555554443
No 104
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=29.04 E-value=2.3e+02 Score=22.88 Aligned_cols=65 Identities=12% Similarity=0.108 Sum_probs=39.4
Q ss_pred cchhhHHHHHHHHHh-cCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc----CCCc
Q 018827 99 GLRQFSMKVCEKVES-KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK----DKKE 173 (350)
Q Consensus 99 GLR~fS~KVcekVk~-kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK----sKk~ 173 (350)
||-.--..|.-.+.. .+.++-.|+|+.+. .-+--|=-+++-|+.-|+|+| ..+.
T Consensus 28 gLt~~q~~vL~~L~~~~~~~~~~eLa~~l~---------------------~~~~tvs~~v~~Le~~GlV~R~~~~~DrR 86 (151)
T 4aik_A 28 ELTQTHWVTLYNINRLPPEQSQIQLAKAIG---------------------IEQPSLVRTLDQLEEKGLITRHTSANDRR 86 (151)
T ss_dssp CCCHHHHHHHHHHHHSCTTSCHHHHHHHHT---------------------SCHHHHHHHHHHHHHTTSEEEEECSSCTT
T ss_pred CCCHHHHHHHHHHHHcCCCCcHHHHHHHHC---------------------cCHHHHHHHHHHHHhCCCeEeecCCCCCc
Confidence 444434445555543 44556677777664 334456678999999999998 2345
Q ss_pred eeecCCCCCCh
Q 018827 174 IQWKGLPRTSL 184 (350)
Q Consensus 174 IqW~G~~~~s~ 184 (350)
..+.-+.....
T Consensus 87 ~~~l~LT~~G~ 97 (151)
T 4aik_A 87 AKRIKLTEQSS 97 (151)
T ss_dssp CEEEEECGGGH
T ss_pred chhhhcCHHHH
Confidence 55555554433
No 105
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=29.00 E-value=97 Score=25.72 Aligned_cols=44 Identities=11% Similarity=0.306 Sum_probs=30.7
Q ss_pred CCceeecCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018827 171 KKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQ 214 (350)
Q Consensus 171 Kk~IqW~G~~~~s~~~~~~Lk~El~~L~e~I~~K~~~LqEL~~q 214 (350)
-.++.|.|.+.....++++|++|+...+..+---.+.|.+-+.+
T Consensus 21 ~~~~~~~~~~~~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~ 64 (107)
T 2k48_A 21 TENLYFQGIDPFTMSTLQELQENITAHEQQLVTARQKLKDAEKA 64 (107)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888778899999999877766555555555555544
No 106
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=28.84 E-value=26 Score=27.11 Aligned_cols=43 Identities=16% Similarity=0.255 Sum_probs=32.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 106 KVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 106 KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
.|...+. .+..+++|+|+.|- ..-+.-|+-.++.|+..|||++
T Consensus 29 ~IL~~L~-~~~~~~~eL~~~l~--------------------gis~~~ls~~L~~Le~~GlV~r 71 (107)
T 2fsw_A 29 LIIFQIN-RRIIRYGELKRAIP--------------------GISEKMLIDELKFLCGKGLIKK 71 (107)
T ss_dssp HHHHHHT-TSCEEHHHHHHHST--------------------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHH-hCCcCHHHHHHHcc--------------------cCCHHHHHHHHHHHHHCCCEEE
Confidence 3445554 67788988888762 0245678999999999999998
No 107
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=28.38 E-value=42 Score=25.14 Aligned_cols=43 Identities=12% Similarity=0.171 Sum_probs=34.1
Q ss_pred HHHHHHHhcC-CCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchh-hhhhhhhhhhccchhc
Q 018827 106 KVCEKVESKG-RTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRR-VYDALNVLMAMDIISK 169 (350)
Q Consensus 106 KVcekVk~kg-~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRR-VYDItNVLegIgLIeK 169 (350)
.|...+...+ ..|..|+|+.+- .-+-- |+-+++-|+.-|+|++
T Consensus 19 ~~L~~l~~~~~~~t~~eLa~~l~---------------------is~~t~vs~~l~~Le~~Glv~~ 63 (95)
T 2pg4_A 19 PTLLEFEKKGYEPSLAEIVKASG---------------------VSEKTFFMGLKDRLIRAGLVKE 63 (95)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHC---------------------CCHHHHHTTHHHHHHHTTSEEE
T ss_pred HHHHHHHhcCCCCCHHHHHHHHC---------------------CCchHHHHHHHHHHHHCCCeec
Confidence 4556666676 799999999884 34566 8889999999999986
No 108
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=27.98 E-value=37 Score=26.78 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=35.2
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
.+|.+.|++.|..+..|+|++|-. .+.+||| -|+.|+..|+|.|
T Consensus 5 ~~Il~~L~~~g~vsv~eLA~~l~V-----------------S~~TIRr----DL~~Le~~G~l~R 48 (87)
T 2k02_A 5 MEVRDMLALQGRMEAKQLSARLQT-----------------PQPLIDA----MLERMEAMGKVVR 48 (87)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHTTC-----------------CHHHHHH----HHHHHHTTCCSEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCc-----------------CHHHHHH----HHHHHHHCCCEEE
Confidence 468899999999999999988741 2335665 4799999999998
No 109
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=27.91 E-value=47 Score=26.37 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcCC
Q 018827 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDK 171 (350)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKsK 171 (350)
..+...+...+..+..|+|+.|- .-+--|.-+++.|+.-|+|++..
T Consensus 11 ~~i~~l~~~~~~~~~~ela~~l~---------------------vs~~tvs~~l~~Le~~Glv~r~~ 56 (142)
T 1on2_A 11 EQIYMLIEEKGYARVSDIAEALA---------------------VHPSSVTKMVQKLDKDEYLIYEK 56 (142)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHT---------------------SCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHhhcCCCCHHHHHHHhC---------------------CCHHHHHHHHHHHHHCCCEEEee
Confidence 34556666678899999999874 34556788999999999999954
No 110
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=27.90 E-value=67 Score=26.69 Aligned_cols=56 Identities=20% Similarity=0.217 Sum_probs=39.1
Q ss_pred ccchhhH--HHHHHHHHh-cCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 98 RGLRQFS--MKVCEKVES-KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 98 ~GLR~fS--~KVcekVk~-kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
+|||.-. ..|.+.+.+ .+..|-.||.+.|-.++.. .-+==||-.|+.|+..|||.|
T Consensus 21 ~g~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~----------------is~aTVYR~L~~L~e~Glv~~ 79 (150)
T 2xig_A 21 NGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKN----------------TSISSVYRILNFLEKENFISV 79 (150)
T ss_dssp CC--CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTT----------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCC----------------CCHhhHHHHHHHHHHCCcEEE
Confidence 5666555 347777766 4678888888887654221 234569999999999999999
No 111
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=27.69 E-value=69 Score=25.16 Aligned_cols=39 Identities=18% Similarity=0.308 Sum_probs=31.1
Q ss_pred HhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcCC
Q 018827 112 ESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDK 171 (350)
Q Consensus 112 k~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKsK 171 (350)
+..+..|..|+|+.|- .-+--|+-+++.|+.-|+|++..
T Consensus 27 ~~~~~~s~~ela~~l~---------------------is~~tv~~~l~~Le~~Gli~r~~ 65 (139)
T 2x4h_A 27 DSGEGAKINRIAKDLK---------------------IAPSSVFEEVSHLEEKGLVKKKE 65 (139)
T ss_dssp TTTSCBCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEEET
T ss_pred hcCCCcCHHHHHHHhC---------------------CChHHHHHHHHHHHHCCCEEecC
Confidence 3467889999999874 33456888999999999999965
No 112
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=27.56 E-value=1.1e+02 Score=25.61 Aligned_cols=55 Identities=20% Similarity=0.161 Sum_probs=28.3
Q ss_pred cchhcCCCceeecCCCCCC----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018827 165 DIISKDKKEIQWKGLPRTS----LNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQ 219 (350)
Q Consensus 165 gLIeKsKk~IqW~G~~~~s----~~~~~~Lk~El~~L~e~I~~K~~~LqEL~~q~~aLk 219 (350)
+-|....+-+-|.|.+--. ..-.+-|+..+..+...++.....+.++..+...+.
T Consensus 74 g~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~ 132 (151)
T 2zdi_C 74 GVIVDKNNAIVSVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVA 132 (151)
T ss_dssp EECSCTTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred EEECCCCEEEEEeCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445677888876321 122234444445555555555555555555444333
No 113
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=26.92 E-value=63 Score=27.58 Aligned_cols=53 Identities=15% Similarity=0.210 Sum_probs=37.0
Q ss_pred HHHHHHHHhc-CCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccc-hhcCCCceeecC
Q 018827 105 MKVCEKVESK-GRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDI-ISKDKKEIQWKG 178 (350)
Q Consensus 105 ~KVcekVk~k-g~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgL-IeKsKk~IqW~G 178 (350)
.++.+.+++. +..|..|+|++|- +-+|-||-=++.|+..|+ |.+...-+.+..
T Consensus 24 ~~Il~~L~~~~~~~s~~eLa~~l~---------------------vS~~Ti~rdi~~L~~~G~~I~~~~~Gy~l~~ 78 (187)
T 1j5y_A 24 KSIVRILERSKEPVSGAQLAEELS---------------------VSRQVIVQDIAYLRSLGYNIVATPRGYVLAG 78 (187)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHHT---------------------SCHHHHHHHHHHHHHHTCCCEEETTEEECCT
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCeEEEECCEEEECC
Confidence 3467777764 4589999999873 345666666778899999 876555555543
No 114
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=25.97 E-value=22 Score=28.17 Aligned_cols=61 Identities=15% Similarity=0.158 Sum_probs=42.4
Q ss_pred ccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc--CCCcee
Q 018827 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK--DKKEIQ 175 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK--sKk~Iq 175 (350)
.+|-..-..|++.|-+++..|-.|||+.|-.+ ...-+--||-+++-|+.-|+|+| +++...
T Consensus 31 ~~LT~~e~~VL~~L~~~~~~t~~eL~~~l~~~-----------------~~~s~sTVt~~L~rLe~KGlV~R~~~gR~~~ 93 (99)
T 2k4b_A 31 FNVSNAELIVMRVIWSLGEARVDEIYAQIPQE-----------------LEWSLATVKTLLGRLVKKEMLSTEKEGRKFV 93 (99)
T ss_dssp CCCCCSCSHHHHHHHHHSCEEHHHHHHTCCGG-----------------GCCCHHHHHHHHHHHHHTTSCEEEEETTEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCCHHHHHHHHhcc-----------------cCCCHhhHHHHHHHHHHCCCEEEEeCCCEEE
Confidence 34444445677888778888888888876421 01234569999999999999998 444443
No 115
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=25.71 E-value=53 Score=27.34 Aligned_cols=56 Identities=20% Similarity=0.259 Sum_probs=39.5
Q ss_pred ccchhhH--HHHHHHHHh-c-CCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 98 RGLRQFS--MKVCEKVES-K-GRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 98 ~GLR~fS--~KVcekVk~-k-g~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
.|||.-. ..|.+.+.+ . +..|-.||.+.|-.++.. .-+==||-.|+.|+..|||.|
T Consensus 11 ~g~r~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~----------------is~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 11 AGLKVTLPRLKILEVLQQPECQHISAEELYKKLIDLGEE----------------IGLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp TTCCCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCC----------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCC----------------CCHHHHHHHHHHHHHCCcEEE
Confidence 4555544 347787865 3 577887888877654221 234569999999999999999
No 116
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=25.65 E-value=1.1e+02 Score=24.84 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=25.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018827 184 LNDIEELKAERLGLRNRIEKKTAYLQELEDQF 215 (350)
Q Consensus 184 ~~~~~~Lk~El~~L~e~I~~K~~~LqEL~~q~ 215 (350)
..++..|..+...|.+.|+.+.+.|+.|++..
T Consensus 12 k~El~~L~~~E~~LD~~i~~~~~~l~~lted~ 43 (106)
T 2aze_B 12 TQDLRQLQESEQQLDHLMNICTTQLRLLSEDT 43 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 35677888888888889999999998888653
No 117
>1wrj_A Methylated-DNA--protein-cysteine methyltransferase; 2.00A {Sulfolobus tokodaii}
Probab=25.40 E-value=34 Score=29.70 Aligned_cols=29 Identities=28% Similarity=0.510 Sum_probs=25.0
Q ss_pred ccchhhHHHHHHHHHh---cCCCCHHHHHHHH
Q 018827 98 RGLRQFSMKVCEKVES---KGRTTYNEVADEL 126 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~---kg~TTYnEVAdeL 126 (350)
.|+-.|..+|++.|.. ..++||.+||..+
T Consensus 67 ~g~t~fq~~V~~~l~~IP~G~~~tYg~iA~~~ 98 (156)
T 1wrj_A 67 KPFNEFRIRVFKEVMRIKWGEVRTYKQVADAV 98 (156)
T ss_dssp TTSCHHHHHHHHHHTTSCTTCCEEHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhCCCCCceEcHHHHHHHh
Confidence 4666899999999998 5789999999886
No 118
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=25.36 E-value=1.5e+02 Score=25.09 Aligned_cols=12 Identities=17% Similarity=0.218 Sum_probs=7.9
Q ss_pred hhhhhhhccchh
Q 018827 157 ALNVLMAMDIIS 168 (350)
Q Consensus 157 ItNVLegIgLIe 168 (350)
=+-||.|++|..
T Consensus 57 r~aVLaALNiad 68 (138)
T 3hnw_A 57 LRTDMMYLNIAD 68 (138)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 356777777763
No 119
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=25.01 E-value=58 Score=26.83 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
..|...+. .|..+++|+|+.|- .-+.-|...++.|+.-|||+|
T Consensus 27 l~IL~~L~-~g~~~~~eLa~~lg---------------------is~~tls~~L~~Le~~GlI~r 69 (146)
T 2f2e_A 27 MLIVRDAF-EGLTRFGEFQKSLG---------------------LAKNILAARLRNLVEHGVMVA 69 (146)
T ss_dssp HHHHHHHH-TTCCSHHHHHHHHC---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHH-hCCCCHHHHHHHhC---------------------CCHHHHHHHHHHHHHCCCEEE
Confidence 34445554 68899999998872 345678889999999999999
No 120
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=24.92 E-value=66 Score=25.41 Aligned_cols=51 Identities=14% Similarity=0.085 Sum_probs=39.3
Q ss_pred ccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
.||-.--..|...+...+..|..|+|+.|- .-+--|+-+++-|+.-|+|++
T Consensus 43 ~~l~~~~~~iL~~l~~~~~~t~~ela~~l~---------------------~s~~tvs~~l~~Le~~glv~r 93 (153)
T 2pex_A 43 LDLTYPQYLVMLVLWETDERSVSEIGERLY---------------------LDSATLTPLLKRLQAAGLVTR 93 (153)
T ss_dssp TTCCHHHHHHHHHHHHSCSEEHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHHHHhCCCcCHHHHHHHhC---------------------CCcccHHHHHHHHHHCCCEee
Confidence 456555566777777778888888888764 335568889999999999998
No 121
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=23.91 E-value=2.4e+02 Score=21.82 Aligned_cols=32 Identities=19% Similarity=0.114 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018827 192 AERLGLRNRIEKKTAYLQELEDQFVGLQNLIQ 223 (350)
Q Consensus 192 ~El~~L~e~I~~K~~~LqEL~~q~~aLknLie 223 (350)
+|+..++++|+.....|++.......|++-+.
T Consensus 33 eELr~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 33 EELRQRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556677777777766665555555443
No 122
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=23.61 E-value=2.5e+02 Score=22.29 Aligned_cols=54 Identities=19% Similarity=0.193 Sum_probs=40.8
Q ss_pred cchhhHHHHHHHHHh-cCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 99 GLRQFSMKVCEKVES-KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 99 GLR~fS~KVcekVk~-kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
||-.--..|+..+-. .+..|-.|||+.|-.+ ...-+--||-+++-|+.-|+|++
T Consensus 6 ~lt~~e~~vL~~L~~~~~~~t~~el~~~l~~~-----------------~~~~~~Tvt~~l~rLe~kGlv~r 60 (138)
T 2g9w_A 6 RLGDLERAVMDHLWSRTEPQTVRQVHEALSAR-----------------RDLAYTTVMAVLQRLAKKNLVLQ 60 (138)
T ss_dssp GCCHHHHHHHHHHHTCSSCEEHHHHHHHHTTT-----------------CCCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHhcc-----------------CCCCHHHHHHHHHHHHHCCCEEE
Confidence 444445678888887 5889999999988521 01234579999999999999999
No 123
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=23.23 E-value=75 Score=25.40 Aligned_cols=49 Identities=10% Similarity=0.211 Sum_probs=35.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc--CCCceee
Q 018827 106 KVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK--DKKEIQW 176 (350)
Q Consensus 106 KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK--sKk~IqW 176 (350)
+|...+. .+..+..|+|+.|- .-+--|+-.++.|+..|+|.+ +++.+.|
T Consensus 50 ~IL~~L~-~~~~s~~ela~~lg---------------------is~stvs~~L~~Le~~Glv~~~~~gr~~~y 100 (122)
T 1r1t_A 50 RLLSLLA-RSELCVGDLAQAIG---------------------VSESAVSHQLRSLRNLRLVSYRKQGRHVYY 100 (122)
T ss_dssp HHHHHHT-TCCBCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred HHHHHHH-cCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCeEEEEeCCEEEE
Confidence 4555555 36778888888873 334678889999999999987 4444444
No 124
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=23.14 E-value=68 Score=23.17 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=37.4
Q ss_pred HHHHHHHHHhc-CCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcCC
Q 018827 104 SMKVCEKVESK-GRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDK 171 (350)
Q Consensus 104 S~KVcekVk~k-g~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKsK 171 (350)
-.+|.+.+.+. ...+..|+|+.|- .-|.-|+-+++.|+.-|+|...+
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lg---------------------lsr~tv~~~l~~L~~~G~I~~~~ 59 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQ---------------------VPKKTLNQVLYRLKKEDRVSSPS 59 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHC---------------------SCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCcEecCC
Confidence 45688888775 4689999999874 34677899999999999998733
No 125
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=22.77 E-value=50 Score=25.92 Aligned_cols=50 Identities=14% Similarity=0.129 Sum_probs=34.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc--CCCceee
Q 018827 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK--DKKEIQW 176 (350)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK--sKk~IqW 176 (350)
.+|+..+. .+..+..|+|+.|- .-+--|+-.+++|+..|||++ +++.+.|
T Consensus 21 ~~Il~~L~-~~~~~~~eLa~~l~---------------------is~~tvs~hL~~L~~~GlV~~~~~gr~~~y 72 (118)
T 3f6o_A 21 RAVLGRLS-RGPATVSELAKPFD---------------------MALPSFMKHIHFLEDSGWIRTHKQGRVRTC 72 (118)
T ss_dssp HHHHHHHH-TCCEEHHHHHTTCC---------------------SCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred HHHHHHHH-hCCCCHHHHHHHhC---------------------cCHHHHHHHHHHHHHCCCeEEEecCCEEEE
Confidence 44566665 46777877776652 345567888999999999987 4444444
No 126
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=22.74 E-value=27 Score=30.30 Aligned_cols=51 Identities=10% Similarity=-0.072 Sum_probs=38.5
Q ss_pred ccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
.||-.--..|+..+...+.+|..|+|+.+- .-+--|.-+++-|+.-|+|++
T Consensus 44 ~gLt~~q~~iL~~L~~~~~~t~~eLa~~l~---------------------i~~stvs~~l~~Le~~GlV~r 94 (207)
T 2fxa_A 44 YDLNINEHHILWIAYQLNGASISEIAKFGV---------------------MHVSTAFNFSKKLEERGYLRF 94 (207)
T ss_dssp GTCCHHHHHHHHHHHHHTSEEHHHHHHHTT---------------------CCHHHHHHHHHHHHHHTSEEE
T ss_pred cCCCHHHHHHHHHHHHCCCcCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCEEE
Confidence 456555566777777777788888888764 234567789999999999999
No 127
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=22.72 E-value=2.6e+02 Score=22.18 Aligned_cols=20 Identities=15% Similarity=0.270 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018827 199 NRIEKKTAYLQELEDQFVGL 218 (350)
Q Consensus 199 e~I~~K~~~LqEL~~q~~aL 218 (350)
+.|+...++|.+|..+....
T Consensus 51 ~el~~h~~ei~~le~~i~rh 70 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERH 70 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544333
No 128
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=22.25 E-value=2.1e+02 Score=22.71 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018827 188 EELKAERLGLRNRIEKKTAYLQELE 212 (350)
Q Consensus 188 ~~Lk~El~~L~e~I~~K~~~LqEL~ 212 (350)
..|+.++..|++.+.+..+++.++.
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~ 28 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDAL 28 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777776666666666665
No 129
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=22.01 E-value=1.9e+02 Score=19.61 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=29.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 107 VCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 107 VcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
+...+.+.+..|..|+++.|-.+.. .+-.+=||-.|+ .+|+| |
T Consensus 10 i~~ll~~~~~~t~~el~~~l~~~~~----------------~vs~~Tv~R~L~---~lg~v-~ 52 (64)
T 2p5k_A 10 IREIITSNEIETQDELVDMLKQDGY----------------KVTQATVSRDIK---ELHLV-K 52 (64)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHTTC----------------CCCHHHHHHHHH---HHTCE-E
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhCC----------------CcCHHHHHHHHH---HcCCE-E
Confidence 4567778889999999999864311 234456776666 55777 6
No 130
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=22.00 E-value=2.2e+02 Score=25.12 Aligned_cols=50 Identities=12% Similarity=0.203 Sum_probs=37.6
Q ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcC-CCcee
Q 018827 105 MKVCEKVESKG-RTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD-KKEIQ 175 (350)
Q Consensus 105 ~KVcekVk~kg-~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKs-Kk~Iq 175 (350)
.+|.+.+...+ ..|..|+|+.+- .-|--||-+++.|+..|+|+++ .+.+.
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~g---------------------l~~stv~r~l~~L~~~G~v~~~~~~~Y~ 62 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFN---------------------MSVSNAYKYMVVLEEKGFVLRKKDKRYV 62 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTT---------------------CCHHHHHHHHHHHHHTTSEEECTTSCEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCcEEECCCCcEE
Confidence 45677776654 689999998873 3456789999999999999996 34443
No 131
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=21.15 E-value=2.8e+02 Score=23.01 Aligned_cols=50 Identities=12% Similarity=0.076 Sum_probs=36.7
Q ss_pred cchhhHHHHHHHHHh--cCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 99 GLRQFSMKVCEKVES--KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 99 GLR~fS~KVcekVk~--kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
||-.--..|...+.. .+.+|..++|+.+- .-+--|.-+++-|+.-|+|++
T Consensus 38 ~lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~---------------------is~~tvs~~l~~Le~~GlV~r 89 (189)
T 3nqo_A 38 ILTSRQYMTILSILHLPEEETTLNNIARKMG---------------------TSKQNINRLVANLEKNGYVDV 89 (189)
T ss_dssp SSCHHHHHHHHHHHHSCGGGCCHHHHHHHHT---------------------SCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCHHHHHHHHHHHhccCCCcCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCEEe
Confidence 355555666777765 56788888888874 234556778999999999998
No 132
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=20.57 E-value=2e+02 Score=21.67 Aligned_cols=40 Identities=10% Similarity=0.113 Sum_probs=26.7
Q ss_pred CccccCccchhhHHHHHHHHHh-cCCCCHHHHHHHHHHhhc
Q 018827 92 GGDKSGRGLRQFSMKVCEKVES-KGRTTYNEVADELVAEFA 131 (350)
Q Consensus 92 ~~~k~~~GLR~fS~KVcekVk~-kg~TTYnEVAdeLV~E~~ 131 (350)
.+-+.-..--.|+......|+. ....+..||+..|-..-.
T Consensus 20 ~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk 60 (90)
T 1wgf_A 20 KPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWN 60 (90)
T ss_dssp CCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 4445555566667666666665 456789999988876543
No 133
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=20.34 E-value=2.6e+02 Score=20.47 Aligned_cols=41 Identities=27% Similarity=0.505 Sum_probs=31.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018827 184 LNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQR 224 (350)
Q Consensus 184 ~~~~~~Lk~El~~L~e~I~~K~~~LqEL~~q~~aLknLier 224 (350)
..+.+.|+.|-..|+..+++-..+|..|+..-..++.++.+
T Consensus 9 ~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~ 49 (54)
T 1deb_A 9 LKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQ 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHH
Confidence 35677888888888888888888888888666666665543
No 134
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=20.18 E-value=49 Score=26.95 Aligned_cols=42 Identities=7% Similarity=0.188 Sum_probs=32.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 107 VCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 107 VcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
|...+. .+..+++|+|+.|- ..-+.-|+..|+.|+.-|||+|
T Consensus 40 IL~~L~-~g~~~~~eLa~~l~--------------------gis~~tls~~L~~Le~~GlV~r 81 (131)
T 1yyv_A 40 ILVALR-DGTHRFSDLRRXMG--------------------GVSEXMLAQSLQALEQDGFLNR 81 (131)
T ss_dssp HHHHGG-GCCEEHHHHHHHST--------------------TCCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHH-cCCCCHHHHHHHhc--------------------cCCHHHHHHHHHHHHHCCcEEE
Confidence 444555 68889999988871 0245678899999999999998
No 135
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.01 E-value=1.2e+02 Score=25.58 Aligned_cols=56 Identities=16% Similarity=0.144 Sum_probs=37.5
Q ss_pred ccchhhH--HHHHHHHHh-cCCCCHHHHHHHHHHh--hcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 98 RGLRQFS--MKVCEKVES-KGRTTYNEVADELVAE--FADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 98 ~GLR~fS--~KVcekVk~-kg~TTYnEVAdeLV~E--~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
+|||.-. ..|.+.+.+ .+..|-.||.+.|-.+ ... .-+==||=.|+.|+..|||.|
T Consensus 27 ~g~r~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~----------------is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 27 GGLKYTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLN----------------VGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HTCCCCHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGC----------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCC----------------CCHHHHHHHHHHHHHCCCEEE
Confidence 4555544 336777765 3566776777766543 211 234569999999999999999
Done!