Query 018827
Match_columns 350
No_of_seqs 185 out of 375
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 06:40:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018827.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018827hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1cf7b_ a.4.5.17 (B:) Cell cyc 100.0 6.6E-39 4.8E-43 254.5 5.5 82 97-180 1-82 (82)
2 d2azea1 e.63.1.1 (A:199-346) T 100.0 4.1E-30 3E-34 222.7 11.2 116 185-302 2-121 (148)
3 d1cf7a_ a.4.5.17 (A:) Cell cyc 99.7 9.8E-18 7.2E-22 127.9 3.6 62 96-177 3-67 (67)
4 d2azeb1 e.63.1.2 (B:201-301) T 99.6 1.5E-15 1.1E-19 123.8 11.7 85 186-277 2-96 (101)
5 d2a61a1 a.4.5.28 (A:5-143) Tra 92.6 0.29 2.1E-05 38.1 8.9 72 98-190 26-101 (139)
6 d1sfxa_ a.4.5.50 (A:) Hypothet 91.3 0.034 2.5E-06 42.8 1.7 51 98-169 16-66 (109)
7 d1ub9a_ a.4.5.28 (A:) Hypothet 72.4 1.2 8.7E-05 32.7 3.1 44 105-169 19-62 (100)
8 d2fbia1 a.4.5.28 (A:5-140) Pro 68.3 5 0.00036 30.5 6.1 62 98-180 26-91 (136)
9 d1s3ja_ a.4.5.28 (A:) Putative 65.1 5.7 0.00041 30.3 5.9 61 99-180 32-96 (143)
10 d2d1ha1 a.4.5.50 (A:1-109) Hyp 64.8 6.9 0.0005 28.8 6.1 62 98-180 17-79 (109)
11 d1mkma1 a.4.5.33 (A:1-75) Tran 61.9 4.1 0.0003 28.9 4.1 45 105-170 8-53 (75)
12 d1ku9a_ a.4.5.36 (A:) DNA-bind 51.1 42 0.0031 25.0 8.8 51 98-169 22-73 (151)
13 d1biaa1 a.4.5.1 (A:1-63) Bioti 50.3 6.8 0.0005 27.0 3.5 42 105-167 8-49 (63)
14 d1fnna1 a.4.5.11 (A:277-388) C 49.0 2.3 0.00017 32.8 0.8 20 150-169 54-73 (112)
15 d2cyya1 a.4.5.32 (A:5-64) Puta 45.2 11 0.00082 25.3 4.0 53 103-176 4-56 (60)
16 d1sfea1 a.4.2.1 (A:93-176) Ada 44.6 5 0.00036 29.7 2.1 26 102-127 3-31 (84)
17 d1fxka_ a.2.5.1 (A:) Prefoldin 41.9 33 0.0024 25.4 6.6 65 156-220 33-100 (107)
18 d1i1ga1 a.4.5.32 (A:2-61) LprA 41.7 15 0.0011 24.7 4.2 53 103-176 4-56 (60)
19 d1z05a1 a.4.5.63 (A:10-80) Tra 39.6 12 0.00087 25.7 3.4 44 105-169 9-52 (71)
20 d2azeb1 e.63.1.2 (B:201-301) T 38.3 24 0.0017 26.7 5.3 34 184-217 7-40 (101)
21 d1mgta1 a.4.2.1 (A:89-169) O6- 35.6 9.6 0.0007 28.0 2.4 25 102-126 3-31 (81)
22 d2cfxa1 a.4.5.32 (A:1-63) Tran 35.3 13 0.00098 25.3 3.1 54 102-176 5-58 (63)
23 d1w5sa1 a.4.5.11 (A:300-409) C 35.2 4.9 0.00036 31.3 0.7 20 150-169 52-71 (110)
24 d2etha1 a.4.5.28 (A:1-140) Put 34.2 59 0.0043 24.0 7.1 62 98-180 28-93 (140)
25 d2fnaa1 a.4.5.11 (A:284-356) H 34.0 43 0.0031 24.1 5.8 46 114-175 17-62 (73)
26 d2fxaa1 a.4.5.28 (A:6-167) Pro 32.7 4.4 0.00032 32.7 -0.0 50 99-169 38-87 (162)
27 d1r7ja_ a.4.5.49 (A:) Sso10a ( 30.3 14 0.00098 27.6 2.5 31 145-175 26-56 (90)
28 d2bzba1 a.30.7.1 (A:1-54) Hypo 30.1 20 0.0015 24.7 3.2 23 193-215 2-24 (54)
29 d1lj9a_ a.4.5.28 (A:) Transcri 29.8 1E+02 0.0075 22.9 8.1 50 99-169 26-75 (144)
30 d1fxkc_ a.2.5.1 (C:) Prefoldin 29.5 57 0.0041 24.4 6.3 16 165-180 64-79 (133)
31 d2cg4a1 a.4.5.32 (A:4-66) Regu 28.3 24 0.0017 23.8 3.4 48 102-170 5-52 (63)
32 d1lnwa_ a.4.5.28 (A:) MexR rep 27.0 1.1E+02 0.0082 22.5 7.8 51 98-169 32-82 (141)
33 d1mzba_ a.4.5.42 (A:) Ferric u 26.9 32 0.0024 25.9 4.4 57 97-169 9-69 (134)
34 d1j5ya1 a.4.5.1 (A:3-67) Putat 26.1 40 0.0029 22.7 4.3 52 106-178 11-64 (65)
35 d1fxkc_ a.2.5.1 (C:) Prefoldin 25.9 77 0.0056 23.6 6.5 38 187-224 3-40 (133)
36 d1tw3a1 a.4.5.29 (A:14-98) Car 25.9 25 0.0018 25.1 3.3 43 106-170 25-67 (85)
37 d1qzza1 a.4.5.29 (A:10-101) Ac 23.2 34 0.0025 24.9 3.7 45 105-171 30-74 (92)
38 d2c0sa1 a.30.7.1 (A:1-57) Hypo 22.6 27 0.0019 24.4 2.7 21 194-214 3-23 (57)
39 d2bv6a1 a.4.5.28 (A:5-140) Tra 21.8 64 0.0047 23.8 5.2 51 98-169 30-80 (136)
40 d1qnta1 a.4.2.1 (A:92-176) O6- 21.5 24 0.0017 25.8 2.4 25 103-127 3-31 (85)
No 1
>d1cf7b_ a.4.5.17 (B:) Cell cycle transcription factor DP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=6.6e-39 Score=254.51 Aligned_cols=82 Identities=73% Similarity=1.184 Sum_probs=76.6
Q ss_pred CccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcCCCceee
Q 018827 97 GRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQW 176 (350)
Q Consensus 97 ~~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKsKk~IqW 176 (350)
|+||||||++|||||+++++|||+||||+||+||..+.... ..+++||+||||||||||||||||||||+|+||.|+|
T Consensus 1 gkgLr~~S~kVcekV~~k~~TtY~eVAdeLv~e~~~~~~~~--~~~~~~d~KNIRRRVYDALNVLmA~~II~K~kK~I~W 78 (82)
T d1cf7b_ 1 GKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHL--AADSAYDQKNIRRRVYDALNVLMAMNIISKEKKEIKW 78 (82)
T ss_dssp CCHHHHHHHHHHHHHHHHSEECHHHHHHHHHHHHHTCTTCC--GGGSHHHHHHHHHHHHHHHHHHHHTTSBCCCSSCEEB
T ss_pred CccHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhccCC--CcchhhcchhhhHHHHHHHHHHHHHhhhhhcCceeEe
Confidence 58999999999999999999999999999999999876542 3468999999999999999999999999999999999
Q ss_pred cCCC
Q 018827 177 KGLP 180 (350)
Q Consensus 177 ~G~~ 180 (350)
+|+|
T Consensus 79 ~Glp 82 (82)
T d1cf7b_ 79 IGLP 82 (82)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 9997
No 2
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.96 E-value=4.1e-30 Score=222.67 Aligned_cols=116 Identities=32% Similarity=0.482 Sum_probs=106.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---CCCCCCCcccceEEEEcCCCcEEEeccCCC
Q 018827 185 NDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSS---GNAPSGGVALPFILVQTRPHATVEVEISED 261 (350)
Q Consensus 185 ~~~~~Lk~El~~L~e~I~~K~~~LqEL~~q~~aLknLierNk~ly~s---~~~~~e~i~LPfIaVkAP~~T~LEVp~peD 261 (350)
++|+.|++|+.+++++|++|+++|+||+.|+++|+||++||+.++.. .+.+++.|+||||+|+|.++|+|+|++++|
T Consensus 2 Qe~~~Le~E~~~~~erI~~K~~~LqeLi~Q~iafknLV~RN~~~e~~~~~~~~~~~~I~LPFIiV~T~~~t~IdceISeD 81 (148)
T d2azea1 2 QECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHAEQQASRPPPPNSVIHLPFIIVNTSKKTVIDCSISND 81 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCCCGGGEEESSCEEEEEESSCCEEEEECTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCCCCCCeeecCEEEEecCCCCEEEEEEccc
Confidence 68999999999999999999999999999999999999999887643 345668899999999999999999999999
Q ss_pred cEEEEEEeCCCCeEEecChhhhhhhcc-ccccCCCCCccCCC
Q 018827 262 MQLVHFDFNSTPFKLHDDNSVLKAMKF-CERQQSDDMAQSFP 302 (350)
Q Consensus 262 ~~qv~fks~~gPieV~DD~~iLK~m~~-~~~~~~~~~~~~~~ 302 (350)
+.+|||+|++ ||+||||++|||+||| ++.+.+.| +.++.
T Consensus 82 k~~y~F~Fn~-tFeIhDD~~VLK~Mgl~~gl~~g~~-s~e~~ 121 (148)
T d2azea1 82 KFEYLFNFDN-TFEIHDDIEVLKRMGMACGLESGSC-SAEDL 121 (148)
T ss_dssp SSEEEEEESS-CEEEEEHHHHHHHTTTTTTGGGTCC-CHHHH
T ss_pred ceeEEecCCC-CeEEechHHHHHHHHHHhCCCCCCC-CHHHH
Confidence 9999999987 7999999999999999 78888999 65543
No 3
>d1cf7a_ a.4.5.17 (A:) Cell cycle transcription factor E2F-4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.67 E-value=9.8e-18 Score=127.94 Aligned_cols=62 Identities=32% Similarity=0.538 Sum_probs=55.6
Q ss_pred cCccchhhHHHHHHHHHh--cCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc-CCC
Q 018827 96 SGRGLRQFSMKVCEKVES--KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK-DKK 172 (350)
Q Consensus 96 ~~~GLR~fS~KVcekVk~--kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK-sKk 172 (350)
..++|..++.+|...+.+ .+..+.+++|+.|.. .+|||||||+|||||||||+| +||
T Consensus 3 ~ekSLglLt~kFl~l~~~~~~~~~~L~~aa~~L~v--------------------~~kRRiYDI~NVLe~igli~K~~Kn 62 (67)
T d1cf7a_ 3 HEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAV--------------------RQKRRIYDITNVLEGIGLIEKKSKN 62 (67)
T ss_dssp TTTCHHHHHHHHHHHHHHSSTTEEEHHHHHHHTTT--------------------CCTHHHHHHHHHHHHHTSEEEEETT
T ss_pred hhhhHHHHHHHHHHHHhhCCCCeeeHHHHHHHhcC--------------------cchhhHHHHHHHHhhhhhhhcccCC
Confidence 457899999999999997 688899999999851 278999999999999999999 999
Q ss_pred ceeec
Q 018827 173 EIQWK 177 (350)
Q Consensus 173 ~IqW~ 177 (350)
.|+|+
T Consensus 63 ~~~W~ 67 (67)
T d1cf7a_ 63 SIQWK 67 (67)
T ss_dssp EEEEC
T ss_pred ccccC
Confidence 99996
No 4
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.62 E-value=1.5e-15 Score=123.76 Aligned_cols=85 Identities=16% Similarity=0.259 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--HHH-hhh------cCCCCCCCcccceEEEEcCCCcEEE
Q 018827 186 DIEELKAERLGLRNRIEKKTAYLQELED-QFVGLQNLIQR--NER-LYS------SGNAPSGGVALPFILVQTRPHATVE 255 (350)
Q Consensus 186 ~~~~Lk~El~~L~e~I~~K~~~LqEL~~-q~~aLknLier--Nk~-ly~------s~~~~~e~i~LPfIaVkAP~~T~LE 255 (350)
+++.|++|+++|.+..+ .|++++. -...|++|.+. |.. .|+ +..+|++++ +||||||+||+||
T Consensus 2 r~~~L~~El~~L~~~E~----~LD~li~~~~~~L~~lted~~n~k~ayVT~~Di~~i~~f~~~t---viaIkAP~gT~Le 74 (101)
T d2azeb1 2 RLEGLTQDLRQLQESEQ----QLDHLMNICTTQLRLLSEDTDSQRLAYVTCQDLRSIADPAEQM---VMVIKAPPETQLQ 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCHHHHHHCEEEHHHHHTTSCTTTEE---EEEEECCTTCEEE
T ss_pred hhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhchhhccCCccCHHHHhhCCCcccce---EEEEECCCCCEEe
Confidence 35677788777765543 3334332 23346666643 544 354 357899999 9999999999999
Q ss_pred eccCCCcEEEEEEeCCCCeEEe
Q 018827 256 VEISEDMQLVHFDFNSTPFKLH 277 (350)
Q Consensus 256 Vp~peD~~qv~fks~~gPieV~ 277 (350)
||+|++.++||++|++|||+||
T Consensus 75 VPdp~~~yqi~lkS~~GpI~V~ 96 (101)
T d2azeb1 75 AVDSSENFQISLKSKQGPIDVF 96 (101)
T ss_dssp EEECSSCEEEEEECSSSCCEEE
T ss_pred ecCCCccEEEEEecCCCCEEEE
Confidence 9999999999999999999998
No 5
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=92.62 E-value=0.29 Score=38.10 Aligned_cols=72 Identities=15% Similarity=0.172 Sum_probs=52.6
Q ss_pred ccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcC----CCc
Q 018827 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD----KKE 173 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKs----Kk~ 173 (350)
-||-.--..|...+...+.+|..|+|+.+. .-+--|.-++|.|+..|+|+|. .+.
T Consensus 26 ~glt~~q~~iL~~i~~~~~~t~~~la~~l~---------------------i~~~tvs~~l~~L~~~gli~r~~~~~D~R 84 (139)
T d2a61a1 26 FGITPAQFDILQKIYFEGPKRPGELSVLLG---------------------VAKSTVTGLVKRLEADGYLTRTPDPADRR 84 (139)
T ss_dssp HTCCHHHHHHHHHHHHHCCBCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred cCCCHHHHHHHHHHHHcCCCCHHHHHHHhC---------------------CCcccchHHHHHHHhcCeeeeeeccCCCC
Confidence 366666677888888888889999999886 3345688999999999999982 356
Q ss_pred eeecCCCCCChhhHHHH
Q 018827 174 IQWKGLPRTSLNDIEEL 190 (350)
Q Consensus 174 IqW~G~~~~s~~~~~~L 190 (350)
..|..+......-++++
T Consensus 85 ~~~i~LT~~G~~~~~~~ 101 (139)
T d2a61a1 85 AYFLVITRKGEEVIEKV 101 (139)
T ss_dssp EEEEEECHHHHHHHHHH
T ss_pred eEEEEECHHHHHHHHHH
Confidence 77777754433333333
No 6
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=91.30 E-value=0.034 Score=42.81 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=42.7
Q ss_pred ccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
-||..--.+|+..+-+.|..|-.|||+.+- .-+..||++++-|+.-|+|+|
T Consensus 16 lGlt~~e~~v~~~L~~~g~~t~~eia~~~~---------------------i~~~~v~~~l~~L~~~GlV~r 66 (109)
T d1sfxa_ 16 LSFKPSDVRIYSLLLERGGMRVSEIARELD---------------------LSARFVRDRLKVLLKRGFVRR 66 (109)
T ss_dssp TCCCHHHHHHHHHHHHHCCBCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHhcCCCCHHHHHHHhC---------------------CCcchHHHHHHHHHhCCCEEE
Confidence 466666678888888888888888888864 567899999999999999987
No 7
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=72.42 E-value=1.2 Score=32.74 Aligned_cols=44 Identities=7% Similarity=0.139 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
..|+..+...+..|..|+|+.|- .-+--|+-.++.|+..|+|++
T Consensus 19 ~~IL~~L~~~~~~~~~eLa~~l~---------------------is~~~vs~~l~~L~~~glV~~ 62 (100)
T d1ub9a_ 19 LGIMIFLLPRRKAPFSQIQKVLD---------------------LTPGNLDSHIRVLERNGLVKT 62 (100)
T ss_dssp HHHHHHHHHHSEEEHHHHHHHTT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHhccCCCeeHHHHHHHHh---------------------hccccccHHHHHHhhhceeEE
Confidence 56888898889999999999874 345678889999999999998
No 8
>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=68.25 E-value=5 Score=30.48 Aligned_cols=62 Identities=16% Similarity=0.252 Sum_probs=46.1
Q ss_pred ccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc--C--CCc
Q 018827 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK--D--KKE 173 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK--s--Kk~ 173 (350)
.||-.-...|...+...+.++-+|+|+.+- .-+--|..+++-|+.-|+|+| + .+.
T Consensus 26 ~glt~~q~~vL~~l~~~~~~t~~~la~~~~---------------------i~~~~vs~~i~~L~~~gli~r~~~~~D~R 84 (136)
T d2fbia1 26 HGLTEQQWRVIRILRQQGEMESYQLANQAC---------------------ILRPSMTGVLARLERDGIVRRWKAPKDQR 84 (136)
T ss_dssp HTCCHHHHHHHHHHHHHCSEEHHHHHHHTT---------------------CCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred cCCCHHHHHHHHHHHHcCCCCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCEEEeecCccCc
Confidence 356666677788888888899999988875 345678889999999999998 2 234
Q ss_pred eeecCCC
Q 018827 174 IQWKGLP 180 (350)
Q Consensus 174 IqW~G~~ 180 (350)
..+.-+.
T Consensus 85 ~~~l~lT 91 (136)
T d2fbia1 85 RVYVNLT 91 (136)
T ss_dssp EEEEEEC
T ss_pred hhhhccC
Confidence 5554443
No 9
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}
Probab=65.12 E-value=5.7 Score=30.34 Aligned_cols=61 Identities=15% Similarity=0.201 Sum_probs=40.7
Q ss_pred cchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc--C--CCce
Q 018827 99 GLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK--D--KKEI 174 (350)
Q Consensus 99 GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK--s--Kk~I 174 (350)
||-.--..|...+...+.+|-+|+|+.+. .-+-.|-.++|-|+.-|+|+| + .+..
T Consensus 32 glt~~q~~iL~~l~~~~~~t~~~la~~~~---------------------i~~~~vs~~l~~L~~~glv~r~~~~~D~R~ 90 (143)
T d1s3ja_ 32 GVTPAQLFVLASLKKHGSLKVSEIAERME---------------------VKPSAVTLMADRLEQKNLIARTHNTKDRRV 90 (143)
T ss_dssp TCCHHHHHHHHHHHHHSEEEHHHHHHHHT---------------------SCHHHHHHHHHHHHHTTSEEEEECSSCTTS
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHhhhheeeeecCCCCc
Confidence 44433455566666666677777777764 346678889999999999997 2 2444
Q ss_pred eecCCC
Q 018827 175 QWKGLP 180 (350)
Q Consensus 175 qW~G~~ 180 (350)
.+..+.
T Consensus 91 ~~v~lT 96 (143)
T d1s3ja_ 91 IDLSLT 96 (143)
T ss_dssp EEEEEC
T ss_pred eEEEEC
Confidence 444443
No 10
>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}
Probab=64.78 E-value=6.9 Score=28.82 Aligned_cols=62 Identities=23% Similarity=0.259 Sum_probs=41.3
Q ss_pred ccchhhHHHHHHHH-HhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcCCCceee
Q 018827 98 RGLRQFSMKVCEKV-ESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQW 176 (350)
Q Consensus 98 ~GLR~fS~KVcekV-k~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKsKk~IqW 176 (350)
-||..--..|+..+ +..|..|-+|+|+.+- .-+--|+=+++-|+.-|+|+|..+.-..
T Consensus 17 ~gLs~~~~~iL~~L~~~~~~~t~~eLa~~~~---------------------i~~~tvs~~l~~L~~~GlV~r~~~~~d~ 75 (109)
T d2d1ha1 17 YKITDTDVAVLLKMVEIEKPITSEELADIFK---------------------LSKTTVENSLKKLIELGLVVRTKTEGKK 75 (109)
T ss_dssp HTCCHHHHHHHHHHHHHCSCEEHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEEEEC----
T ss_pred cCcCHHHHHHHHHHHHcCCCCCHHHHHHHHC---------------------ccHhHHHHHHHHHHHCCCEEEeecCCCC
Confidence 45655566666544 6678889999999875 3456788899999999999995444333
Q ss_pred cCCC
Q 018827 177 KGLP 180 (350)
Q Consensus 177 ~G~~ 180 (350)
.|-+
T Consensus 76 rg~~ 79 (109)
T d2d1ha1 76 IGRP 79 (109)
T ss_dssp ---C
T ss_pred Ccee
Confidence 3443
No 11
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=61.92 E-value=4.1 Score=28.87 Aligned_cols=45 Identities=13% Similarity=0.262 Sum_probs=35.8
Q ss_pred HHHHHHHHh-cCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcC
Q 018827 105 MKVCEKVES-KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (350)
Q Consensus 105 ~KVcekVk~-kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKs 170 (350)
..|.+.+-. .+..+..|+|+++- .-|=.+|-+++.|+..|+++|+
T Consensus 8 l~IL~~~a~~~~~~s~~eia~~~~---------------------~~~st~~rll~tL~~~g~l~~~ 53 (75)
T d1mkma1 8 FEILDFIVKNPGDVSVSEIAEKFN---------------------MSVSNAYKYMVVLEEKGFVLRK 53 (75)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTT---------------------CCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCEEEC
Confidence 456666654 56789999999874 3456799999999999999994
No 12
>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=51.12 E-value=42 Score=25.00 Aligned_cols=51 Identities=22% Similarity=0.217 Sum_probs=37.4
Q ss_pred ccchhhHHHHHHHH-HhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 98 RGLRQFSMKVCEKV-ESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 98 ~GLR~fS~KVcekV-k~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
.||-.-..+|.-.+ .+.+..|..|+|+.+- .-|=.||=+++.|+..|+|.+
T Consensus 22 ~Gl~~~~~~i~~~L~~~~~plt~~ela~~l~---------------------vsk~~vs~~l~~L~~~GlV~r 73 (151)
T d1ku9a_ 22 HGLNKSVGAVYAILYLSDKPLTISDIMEELK---------------------ISKGNVSMSLKKLEELGFVRK 73 (151)
T ss_dssp TTCCHHHHHHHHHHHHCSSCEEHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHhCCCCcCHHHHHHHhC---------------------CCcchHHHHHHHHHHCCCEEE
Confidence 46666556666555 3445577888887764 456789999999999999987
No 13
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=50.32 E-value=6.8 Score=26.98 Aligned_cols=42 Identities=10% Similarity=0.101 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccch
Q 018827 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDII 167 (350)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLI 167 (350)
.++.+++++.+..|..|+|++|- +-+|-||=-++-|+..|++
T Consensus 8 ~~iL~~L~~~~~~s~~eLa~~l~---------------------vS~~ti~r~i~~L~~~G~~ 49 (63)
T d1biaa1 8 LKLIALLANGEFHSGEQLGETLG---------------------MSRAAINKHIQTLRDWGVD 49 (63)
T ss_dssp HHHHHHHTTSSCBCHHHHHHHHT---------------------SCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCcCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCc
Confidence 57888999999999999999984 5567777778999999983
No 14
>d1fnna1 a.4.5.11 (A:277-388) CDC6, C-terminal domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=48.98 E-value=2.3 Score=32.80 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=18.0
Q ss_pred cchhhhhhhhhhhhccchhc
Q 018827 150 IRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 150 iKRRVYDItNVLegIgLIeK 169 (350)
-.||+||++|-|+-+|||+-
T Consensus 54 s~rr~~~~l~~Le~lGiI~~ 73 (112)
T d1fnna1 54 VHSQLWSYLNDLREKGIVET 73 (112)
T ss_dssp CHHHHHHHHHHHHHTTSSEE
T ss_pred hHHHHHHHHHHHHhCCCeee
Confidence 35999999999999999984
No 15
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=45.20 E-value=11 Score=25.30 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=39.3
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcCCCceee
Q 018827 103 FSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQW 176 (350)
Q Consensus 103 fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKsKk~IqW 176 (350)
+=+++.+.++..++++|.|+|++|- .-..-|+.=+.=|+.-|+|.+-.=.|.|
T Consensus 4 ~D~~Il~~L~~n~r~s~~eiA~~l~---------------------ls~~~v~~Ri~~L~~~giI~~~~~~id~ 56 (60)
T d2cyya1 4 IDKKIIKILQNDGKAPLREISKITG---------------------LAESTIHERIRKLRESGVIKKFTAIIDP 56 (60)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHC---------------------SCHHHHHHHHHHHHHHTSSCCCCCCCCG
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCeEeEEEEECH
Confidence 4468899999999999999999983 1223455556778888888875555555
No 16
>d1sfea1 a.4.2.1 (A:93-176) Ada DNA repair protein {Escherichia coli [TaxId: 562]}
Probab=44.55 E-value=5 Score=29.75 Aligned_cols=26 Identities=15% Similarity=0.391 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHh---cCCCCHHHHHHHHH
Q 018827 102 QFSMKVCEKVES---KGRTTYNEVADELV 127 (350)
Q Consensus 102 ~fS~KVcekVk~---kg~TTYnEVAdeLV 127 (350)
.|-.+|.+.|.+ ..++||.|||+.|-
T Consensus 3 ~Fq~~V~~~l~~Ip~G~v~TYg~iA~~~g 31 (84)
T d1sfea1 3 AFQQQVWQALRTIPCGETVSYQQLANAIG 31 (84)
T ss_dssp HHHHHHHHHHTTSCTTCCEEHHHHHHHTT
T ss_pred hHHHHHHHHHHcCCCCCeeeHHHHHHHhC
Confidence 477889998887 57999999998863
No 17
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=41.95 E-value=33 Score=25.40 Aligned_cols=65 Identities=14% Similarity=0.067 Sum_probs=40.0
Q ss_pred hhhhhhhhccchhcCCCceeecCCC---CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018827 156 DALNVLMAMDIISKDKKEIQWKGLP---RTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQN 220 (350)
Q Consensus 156 DItNVLegIgLIeKsKk~IqW~G~~---~~s~~~~~~Lk~El~~L~e~I~~K~~~LqEL~~q~~aLkn 220 (350)
++-.||..+.-...+.+.++-+|.- .....-...|++.++.+..+|+....++..+..+...++.
T Consensus 33 E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~ 100 (107)
T d1fxka_ 33 ETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcccHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888888777777788877742 2212223455555666666666666666666655544443
No 18
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=41.66 E-value=15 Score=24.72 Aligned_cols=53 Identities=23% Similarity=0.209 Sum_probs=38.2
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcCCCceee
Q 018827 103 FSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQW 176 (350)
Q Consensus 103 fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKsKk~IqW 176 (350)
+=+++...+++.++.+|.|+|+.+-- -.--|++-++=|+.-|+|.+-.=.|.|
T Consensus 4 ~D~kIl~~L~~n~r~s~~~lA~~~gl---------------------s~~~v~~Ri~~L~~~giI~~~~~~id~ 56 (60)
T d1i1ga1 4 RDKIILEILEKDARTPFTEIAKKLGI---------------------SETAVRKRVKALEEKGIIEGYTIKINP 56 (60)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTS---------------------CHHHHHHHHHHHHHHTSSCCCCCCCCS
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc---------------------CHHHHHHHHHHHHHCCCeEeEEEEECH
Confidence 44688999999999999999999741 122344456778888888775544544
No 19
>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=39.60 E-value=12 Score=25.72 Aligned_cols=44 Identities=14% Similarity=0.186 Sum_probs=37.6
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
.+|.+.+...+.+|-.|+|+.+- .-+.=|..+++-|+.-|+|+.
T Consensus 9 ~~Il~~l~~~g~~sr~eLa~~~g---------------------lS~~Tv~~~l~~L~~~Glv~e 52 (71)
T d1z05a1 9 GRVYKLIDQKGPISRIDLSKESE---------------------LAPASITKITRELIDAHLIHE 52 (71)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCCcCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCEEE
Confidence 57999999999999999999874 234568889999999999975
No 20
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.29 E-value=24 Score=26.75 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=28.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018827 184 LNDIEELKAERLGLRNRIEKKTAYLQELEDQFVG 217 (350)
Q Consensus 184 ~~~~~~Lk~El~~L~e~I~~K~~~LqEL~~q~~a 217 (350)
..+++.|.++...|.+.|..+.+.|++|++....
T Consensus 7 ~~El~~L~~~E~~LD~li~~~~~~L~~lted~~n 40 (101)
T d2azeb1 7 TQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDS 40 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhh
Confidence 3578889999999999999999999999865433
No 21
>d1mgta1 a.4.2.1 (A:89-169) O6-alkylguanine-DNA alkyltransferase {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Probab=35.61 E-value=9.6 Score=27.98 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=19.6
Q ss_pred hhHHHHHHH-HHh---cCCCCHHHHHHHH
Q 018827 102 QFSMKVCEK-VES---KGRTTYNEVADEL 126 (350)
Q Consensus 102 ~fS~KVcek-Vk~---kg~TTYnEVAdeL 126 (350)
-|..+|.+. ++. ..++||.|||+.+
T Consensus 3 ~Fq~~V~~~l~~~IP~G~v~TYg~iA~~~ 31 (81)
T d1mgta1 3 PFEKKVYEWLTKNVKRGSVITYGDLAKAL 31 (81)
T ss_dssp HHHHHHHHHHHHHSCTTCCEEHHHHHHHT
T ss_pred hHHHHHHHHHHHhCCCCCeEeHHHHHHHc
Confidence 478889874 453 6799999999875
No 22
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=35.29 E-value=13 Score=25.30 Aligned_cols=54 Identities=17% Similarity=0.281 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcCCCceee
Q 018827 102 QFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQW 176 (350)
Q Consensus 102 ~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKsKk~IqW 176 (350)
.+=.++++.+++.++++|.|+|+++-- -..=|+.-++=|+.-|+|.+-.=.|-|
T Consensus 5 ~~D~~IL~~L~~n~r~s~~~iA~~lgi---------------------s~~tv~~Ri~~L~~~giI~~~~~~id~ 58 (63)
T d2cfxa1 5 QIDLNIIEELKKDSRLSMRELGRKIKL---------------------SPPSVTERVRQLESFGIIKQYTLEVDQ 58 (63)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHTC---------------------CHHHHHHHHHHHHHTTSEEEEEEEECT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCc---------------------CHHHHHHHHHHHHHCCCeeeEEEEECH
Confidence 345789999999999999999999841 112234445778888888764444444
No 23
>d1w5sa1 a.4.5.11 (A:300-409) CDC6-like protein APE0152, C-terminal domain {Aeropyrum pernix [TaxId: 56636]}
Probab=35.25 E-value=4.9 Score=31.25 Aligned_cols=20 Identities=10% Similarity=0.034 Sum_probs=18.2
Q ss_pred cchhhhhhhhhhhhccchhc
Q 018827 150 IRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 150 iKRRVYDItNVLegIgLIeK 169 (350)
--+|+||++|-|+-+|||+.
T Consensus 52 ~~t~~~~~l~~Le~lGiI~~ 71 (110)
T d1w5sa1 52 GYTQYHIYLKHLTSLGLVDA 71 (110)
T ss_dssp CHHHHHHHHHHHHHTTSEEE
T ss_pred cHHHHHHHHHHHHHcCCeEE
Confidence 45899999999999999985
No 24
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}
Probab=34.18 E-value=59 Score=24.03 Aligned_cols=62 Identities=13% Similarity=0.147 Sum_probs=44.2
Q ss_pred ccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc----CCCc
Q 018827 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK----DKKE 173 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK----sKk~ 173 (350)
.||-.--..|+..+...+.+|-.|+|+.+. .-|=-|--+++.|+.-|+|+| ..+.
T Consensus 28 ~~lt~~q~~iL~~l~~~~~~t~~~La~~l~---------------------i~~~~vs~~v~~L~~~gli~r~~~~~D~R 86 (140)
T d2etha1 28 SDMKTTELYAFLYVALFGPKKMKEIAEFLS---------------------TTKSNVTNVVDSLEKRGLVVREMDPVDRR 86 (140)
T ss_dssp HHSBHHHHHHHHHHHHHCCBCHHHHHHHTT---------------------SCHHHHHHHHHHHHHTTSEEEEECTTTSS
T ss_pred cCCCHHHHHHHHHHHHcCCcCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCeeeeecccccc
Confidence 355555567888888888899999998875 234456668999999999998 2344
Q ss_pred eeecCCC
Q 018827 174 IQWKGLP 180 (350)
Q Consensus 174 IqW~G~~ 180 (350)
..+.-+.
T Consensus 87 ~~~l~lT 93 (140)
T d2etha1 87 TYRVVLT 93 (140)
T ss_dssp CEEEEEC
T ss_pred hhhhhcC
Confidence 4544443
No 25
>d2fnaa1 a.4.5.11 (A:284-356) Hypothetical protein SSO1545, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=34.03 E-value=43 Score=24.12 Aligned_cols=46 Identities=20% Similarity=0.171 Sum_probs=34.3
Q ss_pred cCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcCCCcee
Q 018827 114 KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQ 175 (350)
Q Consensus 114 kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKsKk~Iq 175 (350)
.| .++.+|=+-|-+....+ .--.++|.+||=|+-+|+|+|..+.+.
T Consensus 17 ~G-~rWs~IK~yle~~~G~~---------------I~d~~ls~lL~nL~k~~~iek~~~~Y~ 62 (73)
T d2fnaa1 17 KC-GKWSDVKRALELEEGIE---------------ISDSEIYNYLTQLTKHSWIIKEGEKYC 62 (73)
T ss_dssp TC-BCHHHHHHHHHHHHCSC---------------CCHHHHHHHHHHHHHTTSEEESSSCEE
T ss_pred cc-CcHHHHHHHHHHHcCCC---------------CChHHHHHHHHHHHHcCceeecCCeec
Confidence 56 57999998886654432 123789999999999999999555554
No 26
>d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]}
Probab=32.68 E-value=4.4 Score=32.67 Aligned_cols=50 Identities=10% Similarity=-0.062 Sum_probs=36.8
Q ss_pred cchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 99 GLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 99 GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
||-.--..|...+...+.+|.+++|+.+. .-|=-|-=+++-|+..|+|+|
T Consensus 38 ~Lt~~q~~vL~~l~~~~~~t~~~la~~~~---------------------l~~~tvs~~i~rL~~~gli~r 87 (162)
T d2fxaa1 38 DLNINEHHILWIAYQLNGASISEIAKFGV---------------------MHVSTAFNFSKKLEERGYLRF 87 (162)
T ss_dssp TCCHHHHHHHHHHHHHTSEEHHHHHHHTT---------------------CCHHHHHHHHHHHHHHTSEEE
T ss_pred CCCHHHHHHHhhhccCCCcCHHHHHHHHc---------------------CCchhhHHHHHHHHHCCCcee
Confidence 55555566777777777778888888765 233445668899999999998
No 27
>d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=30.26 E-value=14 Score=27.56 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=23.2
Q ss_pred hhccccchhhhhhhhhhhhccchhcCCCcee
Q 018827 145 YDEKNIRRRVYDALNVLMAMDIISKDKKEIQ 175 (350)
Q Consensus 145 ~DeKniKRRVYDItNVLegIgLIeKsKk~Iq 175 (350)
|.-.---+|+-..++-|+..|+|++.++.+.
T Consensus 26 ~~aNLs~~~~~kyl~~L~~~GLI~~~~~~Y~ 56 (90)
T d1r7ja_ 26 YGANLSYALTGRYIKMLMDLEIIRQEGKQYM 56 (90)
T ss_dssp HHHTCCHHHHHHHHHHHHHTTSEEEETTEEE
T ss_pred HHcCCCHHHHHHHHHHHHHCCCeeecCCEEE
Confidence 3333445778889999999999999766554
No 28
>d2bzba1 a.30.7.1 (A:1-54) Hypothetical protein BAS1536 {Bacillus anthracis [TaxId: 1392]}
Probab=30.08 E-value=20 Score=24.69 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018827 193 ERLGLRNRIEKKTAYLQELEDQF 215 (350)
Q Consensus 193 El~~L~e~I~~K~~~LqEL~~q~ 215 (350)
|+.+|.++|+.|+.+|-+|..++
T Consensus 2 em~kL~~~IE~KK~ELi~LV~~y 24 (54)
T d2bzba1 2 EMGQLKNKIENKKKELIQLVARH 24 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999998654
No 29
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]}
Probab=29.76 E-value=1e+02 Score=22.92 Aligned_cols=50 Identities=14% Similarity=0.055 Sum_probs=33.7
Q ss_pred cchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 99 GLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 99 GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
||-.--..|.-.+...+.+|-.++|+.+. .-+--|==+++-|+.-|+|+|
T Consensus 26 ~lt~~q~~iL~~i~~~~~~t~~~la~~l~---------------------i~~~tvs~~l~~L~~~glI~r 75 (144)
T d1lj9a_ 26 SLTRGQYLYLVRVCENPGIIQEKIAELIK---------------------VDRTTAARAIKRLEEQGFIYR 75 (144)
T ss_dssp TCTTTHHHHHHHHHHSTTEEHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHC---------------------ccHhhHHHHHHHHHhhhcccc
Confidence 44443444555555666678888888875 233445557899999999998
No 30
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=29.47 E-value=57 Score=24.40 Aligned_cols=16 Identities=13% Similarity=0.036 Sum_probs=10.8
Q ss_pred cchhcCCCceeecCCC
Q 018827 165 DIISKDKKEIQWKGLP 180 (350)
Q Consensus 165 gLIeKsKk~IqW~G~~ 180 (350)
+-|...++.+-|.|.+
T Consensus 64 ~~i~~~~~vlV~lG~g 79 (133)
T d1fxkc_ 64 AELKDTSEVIMSVGAG 79 (133)
T ss_dssp EECCSTTEEEEEEETT
T ss_pred EEecCCCceEEEecCC
Confidence 3344456788888886
No 31
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=28.33 E-value=24 Score=23.85 Aligned_cols=48 Identities=21% Similarity=0.345 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcC
Q 018827 102 QFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (350)
Q Consensus 102 ~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKs 170 (350)
.+=.++...++..++++|.|+|+.|-- ....+++| ++=|+.-|+|.+-
T Consensus 5 ~~D~~IL~~L~~~~r~s~~eiA~~l~l-----------------s~~~v~~R----i~rL~~~GiI~~~ 52 (63)
T d2cg4a1 5 NLDRGILEALMGNARTAYAELAKQFGV-----------------SPETIHVR----VEKMKQAGIITGA 52 (63)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHTS-----------------CHHHHHHH----HHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCc-----------------CHHHHHHH----HHHHHHCCCeEeE
Confidence 345788999999999999999999841 11233343 5678888888753
No 32
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}
Probab=27.04 E-value=1.1e+02 Score=22.51 Aligned_cols=51 Identities=6% Similarity=0.163 Sum_probs=36.2
Q ss_pred ccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
-||-..-..|+..+...+.+|-+|+|+.+.. -|-.|==++|.|+.-|+|+|
T Consensus 32 ~~lt~~q~~vL~~l~~~~~~t~~~la~~l~~---------------------~~~~vsr~l~~L~~~G~v~r 82 (141)
T d1lnwa_ 32 LDLTPPDVHVLKLIDEQRGLNLQDLGRQMCR---------------------DKALITRKIRELEGRNLVRR 82 (141)
T ss_dssp CCCCHHHHHHHHHHHSSTTCBHHHHHHHTTC---------------------CHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCc---------------------cHhHHHHHHHHHHHhhceee
Confidence 4566666677777777777788888887741 12233337899999999998
No 33
>d1mzba_ a.4.5.42 (A:) Ferric uptake regulation protein, FUR {Pseudomonas aeruginosa [TaxId: 287]}
Probab=26.89 E-value=32 Score=25.93 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=39.6
Q ss_pred CccchhhH--HHHHHHHHhc-C-CCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 97 GRGLRQFS--MKVCEKVESK-G-RTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 97 ~~GLR~fS--~KVcekVk~k-g-~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
.+|||.=. ..|++.+.+. + ..|-.||-+.|-.+.. ..-+=-||..|+.|...|||.+
T Consensus 9 ~~GlR~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~----------------~i~~aTVYR~L~~l~e~gli~~ 69 (134)
T d1mzba_ 9 KAGLKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGE----------------DVGLATVYRVLTQFEAAGLVVR 69 (134)
T ss_dssp HTTCCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTC----------------CCCHHHHHHHHHHHHHHTSEEE
T ss_pred HcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCC----------------CccHHHHHHHHHHHHhccEEEE
Confidence 46677544 3488888753 3 5777777777654321 1234569999999999999998
No 34
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=26.14 E-value=40 Score=22.68 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=34.1
Q ss_pred HHHHHHHh-cCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccc-hhcCCCceeecC
Q 018827 106 KVCEKVES-KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDI-ISKDKKEIQWKG 178 (350)
Q Consensus 106 KVcekVk~-kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgL-IeKsKk~IqW~G 178 (350)
++.+.+.+ ++..|-.|+|++|- +-+|=||==++-|+..|+ |...++-+++.|
T Consensus 11 ~Il~~L~~~~~~vs~~~La~~l~---------------------VS~~TI~rdi~~L~~~G~~I~~~~gGY~L~~ 64 (65)
T d1j5ya1 11 SIVRILERSKEPVSGAQLAEELS---------------------VSRQVIVQDIAYLRSLGYNIVATPRGYVLAG 64 (65)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHT---------------------SCHHHHHHHHHHHHHHTCCCEEETTEEECCT
T ss_pred HHHHHHHHcCCCCcHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCeEEEeCCCEEeCC
Confidence 46777765 45688999998883 334445555566888886 666555666543
No 35
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=25.95 E-value=77 Score=23.58 Aligned_cols=38 Identities=13% Similarity=0.155 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018827 187 IEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQR 224 (350)
Q Consensus 187 ~~~Lk~El~~L~e~I~~K~~~LqEL~~q~~aLknLier 224 (350)
+++|..+++.+++.|+...+++..|......+..+++.
T Consensus 3 L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~ 40 (133)
T d1fxkc_ 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKT 40 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666665555455544443
No 36
>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}
Probab=25.93 E-value=25 Score=25.05 Aligned_cols=43 Identities=14% Similarity=0.285 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcC
Q 018827 106 KVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (350)
Q Consensus 106 KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKs 170 (350)
.|.+.+. .|..|..|+|+.+- .-..+++-++.+|.++||+++.
T Consensus 25 ~ifd~l~-~gp~s~~eLA~~~g---------------------~~~~~l~rlLr~l~a~gl~~e~ 67 (85)
T d1tw3a1 25 RLVDHIL-AGARTVKALAARTD---------------------TRPEALLRLIRHLVAIGLLEED 67 (85)
T ss_dssp THHHHHH-TTCCBHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CcHHHhc-cCCCCHHHHHHHhC---------------------cChhHHHHHHHHHHHCCCeEec
Confidence 4566664 67888888888863 2346789999999999999873
No 37
>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}
Probab=23.24 E-value=34 Score=24.88 Aligned_cols=45 Identities=11% Similarity=0.224 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcCC
Q 018827 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDK 171 (350)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKsK 171 (350)
..|.+.+. .|..|..|+|..+- .-.++++-++..|.++||++|++
T Consensus 30 L~ifd~L~-~gp~t~~eLA~~~g---------------------~~~~~l~rLlr~L~a~gll~~~~ 74 (92)
T d1qzza1 30 LRLVDHLL-AGADTLAGLADRTD---------------------THPQALSRLVRHLTVVGVLEGGE 74 (92)
T ss_dssp TTHHHHHH-TTCCSHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEECCC
T ss_pred cCchHHHh-CCCCCHHHHHHHHC---------------------cCchHHHHHHHHHHHCCCeeeec
Confidence 34667775 57788888877753 23478999999999999999944
No 38
>d2c0sa1 a.30.7.1 (A:1-57) Hypothetical protein BAS4809, C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Probab=22.64 E-value=27 Score=24.36 Aligned_cols=21 Identities=33% Similarity=0.317 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018827 194 RLGLRNRIEKKTAYLQELEDQ 214 (350)
Q Consensus 194 l~~L~e~I~~K~~~LqEL~~q 214 (350)
+..|.+.|+.|+++|-+|..+
T Consensus 3 ~~~L~~~IE~KK~eLi~Lv~~ 23 (57)
T d2c0sa1 3 VTKLNDRIEAKKKELIYLVEK 23 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888777777643
No 39
>d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]}
Probab=21.81 E-value=64 Score=23.81 Aligned_cols=51 Identities=18% Similarity=0.134 Sum_probs=38.2
Q ss_pred ccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (350)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK 169 (350)
-||-.--..|+..+...+.+|.+++|+.+.- -+--|.=+++-|+.-|+|+|
T Consensus 30 ~glt~~q~~vL~~i~~~~~~t~~~la~~l~~---------------------~~~~~s~~l~~L~~~Gli~r 80 (136)
T d2bv6a1 30 YNLTYPQFLVLTILWDESPVNVKKVVTELAL---------------------DTGTVSPLLKRMEQVDLIKR 80 (136)
T ss_dssp HTCCHHHHHHHHHHHHSSEEEHHHHHHHTTC---------------------CTTTHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHcCCCCCHHHHHHHHCC---------------------CHhHHHHHHHHHHHCCCEEE
Confidence 3555555677788888888888888888752 23446778999999999998
No 40
>d1qnta1 a.4.2.1 (A:92-176) O6-alkylguanine-DNA alkyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.52 E-value=24 Score=25.79 Aligned_cols=25 Identities=12% Similarity=0.189 Sum_probs=18.8
Q ss_pred hHHH-HHHHHHh---cCCCCHHHHHHHHH
Q 018827 103 FSMK-VCEKVES---KGRTTYNEVADELV 127 (350)
Q Consensus 103 fS~K-VcekVk~---kg~TTYnEVAdeLV 127 (350)
|..+ |.+.|.. ..++||.+||+.+-
T Consensus 3 F~~~~vw~~l~~IP~G~v~TYg~iA~~~g 31 (85)
T d1qnta1 3 FTRQVLWKLLKVVKFGEVISYQQLAALAG 31 (85)
T ss_dssp HHHHHHHHHHHHCCTTCCEEHHHHHHHTT
T ss_pred hHHHHHHHHHhcCCCCCcccHHHHHHHcC
Confidence 5544 5677776 67999999998863
Done!