BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018828
(350 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4VA72|BRCC3_XENTR Lys-63-specific deubiquitinase BRCC36 OS=Xenopus tropicalis
GN=brcc3 PE=2 SV=1
Length = 261
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/99 (56%), Positives = 70/99 (70%), Gaps = 5/99 (5%)
Query: 4 LTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDAN-KVGRIQ 62
+TGR RV+GWYHSHPHITV PSHVDVRTQAMYQ++D GF+GLIFSCF ED N K GRI
Sbjct: 80 ITGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDVGFVGLIFSCFIEDKNTKTGRIL 139
Query: 63 VIAFQSSDGKQN----HISKPIALLPVNKSTVIDLESSL 97
FQS +++ I P+ ++P N + LES++
Sbjct: 140 YTCFQSVQAQKSSEYERIEVPLHVVPHNTIRKVCLESAV 178
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 62/111 (55%), Gaps = 6/111 (5%)
Query: 194 AEYVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLT 253
+EY R E+PLHV+P +++ K+ L S +L R+L +EE+ AY + S G + +T
Sbjct: 152 SEYERIEVPLHVVPHNTIRKV--CLESAVELPRILCQEEQDAYRRI----HSLGHLDSIT 205
Query: 254 YIHHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESE 304
IH+ S + ++C + P + L+DRL++N+ R L E + L E
Sbjct: 206 KIHNGSVFTKNLCGQMSAISGPLLQWLEDRLEQNQQRAQELQSEKEQLLQE 256
>sp|Q66GV6|BRCC3_XENLA Lys-63-specific deubiquitinase BRCC36 OS=Xenopus laevis GN=brcc3
PE=2 SV=1
Length = 261
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 56/99 (56%), Positives = 70/99 (70%), Gaps = 5/99 (5%)
Query: 4 LTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDAN-KVGRIQ 62
+TGR RV+GWYHSHPHITV PSHVDVRTQAMYQ++D GF+GLIFSCF ED N K GRI
Sbjct: 80 ITGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDVGFVGLIFSCFIEDKNTKTGRIL 139
Query: 63 VIAFQSSDGKQN----HISKPIALLPVNKSTVIDLESSL 97
FQS +++ I P+ ++P N + LES++
Sbjct: 140 YTCFQSVQAQKSSEYERIEVPLHVVPHNTIRKVCLESAV 178
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 61/111 (54%), Gaps = 6/111 (5%)
Query: 194 AEYVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLT 253
+EY R E+PLHV+P +++ K+ L S +L R+L +EE+ AY + S G + +T
Sbjct: 152 SEYERIEVPLHVVPHNTIRKV--CLESAVELPRILCQEEQDAYRRI----HSLGHLDSIT 205
Query: 254 YIHHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESE 304
IH+ S + ++C + P + L+DRL++N R L E + L E
Sbjct: 206 KIHNGSVFTKNLCGQMSAISGPLLQWLEDRLEQNRQRAQELQSEKEQLLQE 256
>sp|B5X8M4|BRCC3_SALSA Lys-63-specific deubiquitinase BRCC36 OS=Salmo salar GN=brcc3 PE=2
SV=1
Length = 260
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 68/99 (68%), Gaps = 5/99 (5%)
Query: 4 LTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDAN-KVGRIQ 62
+TGR RV+GWYHSHPHITV PSHVDVRTQAMYQ++D GF+GLIFSCF ED N K GR+
Sbjct: 80 MTGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVL 139
Query: 63 VIAFQSSDGKQ----NHISKPIALLPVNKSTVIDLESSL 97
FQS ++ I PI ++P + LES++
Sbjct: 140 YTCFQSVQAQKGSEYERIEIPIHVVPHEAIGKVCLESAV 178
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
Query: 193 GAEYVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPL 252
G+EY R EIP+HV+P ++ K+ L S +L R+L +EE+ Y + S + P+
Sbjct: 151 GSEYERIEIPIHVVPHEAIGKV--CLESAVELPRILCQEEQDTYRKI----HSLTHLDPI 204
Query: 253 TYIHHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESE 304
T IH+ S + ++C + P + L+DRL++N + L E + L E
Sbjct: 205 TKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNRQSVIELQLEKERLTQE 256
>sp|P46737|BRCC3_MOUSE Lys-63-specific deubiquitinase BRCC36 OS=Mus musculus GN=Brcc3 PE=2
SV=1
Length = 291
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/86 (61%), Positives = 63/86 (73%), Gaps = 5/86 (5%)
Query: 4 LTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDAN-KVGRIQ 62
LTGR RV+GWYHSHPHITV PSHVDVRTQAMYQ++D GF+GLIFSCF ED N K GR+
Sbjct: 110 LTGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVL 169
Query: 63 VIAFQSSDGKQN----HISKPIALLP 84
FQS +++ I PI ++P
Sbjct: 170 YTCFQSIQAQKSSEYERIEIPIHIVP 195
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 18/98 (18%)
Query: 194 AEYVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLT 253
+EY R EIP+H++P ++ K+ L S +L ++L +EE+ AY ++H LT
Sbjct: 182 SEYERIEIPIHIVPHITIGKV--CLESAVELPKILCQEEQDAYR----------RIHSLT 229
Query: 254 Y------IHHTSTYQASMCKLIEYCLSPAISALQDRLK 285
+ IH+ S + ++C + P + L+DRL+
Sbjct: 230 HLDSVTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLE 267
>sp|B2RYM5|BRCC3_RAT Lys-63-specific deubiquitinase BRCC36 OS=Rattus norvegicus GN=Brcc3
PE=2 SV=1
Length = 291
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 69/99 (69%), Gaps = 5/99 (5%)
Query: 4 LTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDAN-KVGRIQ 62
LTGR RV+GWYHSHPHITV PSHVDVRTQAMYQ++D GF+GLIFSCF ED N K GR+
Sbjct: 110 LTGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVL 169
Query: 63 VIAFQSSDGKQN----HISKPIALLPVNKSTVIDLESSL 97
FQS +++ I P+ ++P + LES++
Sbjct: 170 YTCFQSVQAQKSSDYERIEIPVHVVPHVTIGKVCLESAV 208
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 18/117 (15%)
Query: 194 AEYVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLT 253
++Y R EIP+HV+P ++ K+ L S +L ++L +EE+ AY ++H LT
Sbjct: 182 SDYERIEIPVHVVPHVTIGKV--CLESAVELPKILCQEEQDAYR----------RIHSLT 229
Query: 254 Y------IHHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESE 304
+ IH+ S + ++C + P + L+DRL++N+ L L E + L +E
Sbjct: 230 HLDSVTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLRELQREKEELMAE 286
>sp|Q5R9L6|BRCC3_PONAB Lys-63-specific deubiquitinase BRCC36 OS=Pongo abelii GN=BRCC3 PE=2
SV=1
Length = 247
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 57/72 (79%), Gaps = 1/72 (1%)
Query: 4 LTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDAN-KVGRIQ 62
LTGR RV+GWYHSHPHITV PSHVDVRTQAMYQ++D GF+GLIFSCF ED N K GR+
Sbjct: 110 LTGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVL 169
Query: 63 VIAFQSSDGKQN 74
FQS +++
Sbjct: 170 YTCFQSIQAQKS 181
>sp|B0KWU8|BRCC3_CALJA Lys-63-specific deubiquitinase BRCC36 OS=Callithrix jacchus
GN=BRCC3 PE=3 SV=2
Length = 316
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 57/72 (79%), Gaps = 1/72 (1%)
Query: 4 LTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDAN-KVGRIQ 62
LTGR RV+GWYHSHPHITV PSHVDVRTQAMYQ++D GF+GLIFSCF ED N K GR+
Sbjct: 110 LTGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVL 169
Query: 63 VIAFQSSDGKQN 74
FQS +++
Sbjct: 170 YTCFQSIQAQKS 181
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 18/109 (16%)
Query: 202 PLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTY------I 255
P+H++P ++ K+ L S +L ++L +EE+ AY ++H LT+ I
Sbjct: 215 PIHIVPHVTIGKV--CLESAVELPKILCQEEQDAYR----------RIHSLTHLDSVTKI 262
Query: 256 HHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESE 304
H+ S + ++C + P + L+DRL++N+ L L E + L E
Sbjct: 263 HNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLRELQQEKEELMQE 311
>sp|P46736|BRCC3_HUMAN Lys-63-specific deubiquitinase BRCC36 OS=Homo sapiens GN=BRCC3 PE=1
SV=2
Length = 316
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 57/72 (79%), Gaps = 1/72 (1%)
Query: 4 LTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDAN-KVGRIQ 62
LTGR RV+GWYHSHPHITV PSHVDVRTQAMYQ++D GF+GLIFSCF ED N K GR+
Sbjct: 110 LTGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVL 169
Query: 63 VIAFQSSDGKQN 74
FQS +++
Sbjct: 170 YTCFQSIQAQKS 181
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 18/90 (20%)
Query: 202 PLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTY------I 255
P+H++P ++ K+ L S +L ++L +EE+ AY ++H LT+ I
Sbjct: 215 PIHIVPHVTIGKV--CLESAVELPKILCQEEQDAYR----------RIHSLTHLDSVTKI 262
Query: 256 HHTSTYQASMCKLIEYCLSPAISALQDRLK 285
H+ S + ++C + P + L+DRL+
Sbjct: 263 HNGSVFTKNLCSQMSAVSGPLLQWLEDRLE 292
>sp|A5PJP6|BRCC3_BOVIN Lys-63-specific deubiquitinase BRCC36 OS=Bos taurus GN=BRCC3 PE=2
SV=1
Length = 316
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 57/72 (79%), Gaps = 1/72 (1%)
Query: 4 LTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDAN-KVGRIQ 62
LTGR RV+GWYHSHPHITV PSHVDVRTQAMYQ++D GF+GLIFSCF ED N K GR+
Sbjct: 110 LTGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVL 169
Query: 63 VIAFQSSDGKQN 74
FQS +++
Sbjct: 170 YTCFQSIQAQKS 181
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 18/109 (16%)
Query: 202 PLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTY------I 255
P+H++P ++ K+ L S +L ++L +EE+ AY ++H LT+ I
Sbjct: 215 PIHIVPHVTIGKV--CLESAVELPKILCQEEQDAYR----------RIHSLTHLDSVTKI 262
Query: 256 HHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESE 304
H+ S + ++C + P + L+DRL++N+ + L E + L E
Sbjct: 263 HNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHVQELQQEKEELLQE 311
>sp|Q7M757|BRC3L_MOUSE Lys-63-specific deubiquitinase BRCC36-like OS=Mus musculus
GN=C6.1al PE=2 SV=1
Length = 291
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 65/98 (66%), Gaps = 5/98 (5%)
Query: 5 TGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDA-NKVGRIQV 63
TGR RV+GWYHSHPHITV PSHVDVRTQAMYQ++D F+GLIF+CF ED K+GR+
Sbjct: 111 TGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQSFVGLIFACFIEDKPTKIGRVLY 170
Query: 64 IAFQSSDGKQN----HISKPIALLPVNKSTVIDLESSL 97
FQS ++ + PI ++P + L S++
Sbjct: 171 TCFQSVQASKSSEYERLEIPIHIVPRTTIGTVCLRSAI 208
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 18/117 (15%)
Query: 194 AEYVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLT 253
+EY R EIP+H++P +++ + L S +L +L +EE+ AY ++H LT
Sbjct: 182 SEYERLEIPIHIVPRTTIGTV--CLRSAIELPGILCQEEQEAYR----------RIHGLT 229
Query: 254 Y------IHHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESE 304
+ IH+ S + +C + P + L+DRL++N+ RL L E + L E
Sbjct: 230 HLDSVTKIHNGSVFTKHLCSQMSAVCGPLLQWLEDRLEQNQQRLQELEQEKEDLMEE 286
>sp|Q5F3F2|MYSM1_CHICK Histone H2A deubiquitinase MYSM1 OS=Gallus gallus GN=MYSM1 PE=2
SV=1
Length = 832
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 3 VLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQ-LLDTG---FIGLIFSCFSEDANKV 58
L R VIGWYHSHP PS D+ TQA YQ G FIG+I S ++ + N +
Sbjct: 645 TLAARGYSVIGWYHSHPAFDPNPSIRDIDTQAKYQSYFSRGGAMFIGMIVSPYNRN-NPL 703
Query: 59 GRIQVIAFQSSD 70
Q+ SD
Sbjct: 704 PYSQITCLVISD 715
>sp|P41883|YPT5_CAEEL Uncharacterized protein F37A4.5 OS=Caenorhabditis elegans
GN=F37A4.5 PE=3 SV=1
Length = 319
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 4 LTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKVGRIQV 63
L GRT V+GWYHSHP S VDV TQ ++ L + ++ G++ +
Sbjct: 99 LVGRTENVVGWYHSHPGFGCWLSSVDVNTQQSFEALHPRAVAVVVDPIQSVK---GKVML 155
Query: 64 IAFQSSDGKQNHISKPIA 81
AF+S + I +P+A
Sbjct: 156 DAFRSVNPLNLQI-RPLA 172
>sp|Q8LAZ7|CSN5B_ARATH COP9 signalosome complex subunit 5b OS=Arabidopsis thaliana
GN=CSN5B PE=1 SV=2
Length = 357
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 4 LTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKVGRIQV 63
L GR V+GWYHSHP S +DV TQ + Q F+ ++ G++++
Sbjct: 130 LAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQYQEPFLAVVID--PTRTVSAGKVEI 187
Query: 64 IAFQS-SDGKQ---NHISKPIALLPVNK 87
AF++ +G + +H+S+ +P+NK
Sbjct: 188 GAFRTYPEGHKISDDHVSE-YQTIPLNK 214
>sp|Q4IJM4|CSN5_GIBZE COP9 signalosome complex subunit 5 OS=Gibberella zeae (strain PH-1
/ ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=RRI1 PE=3
SV=1
Length = 340
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 6 GRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKVGRIQVIA 65
GR V+GWYHSHP S +DV T+AM Q F+ ++ + G++ + A
Sbjct: 125 GRQENVVGWYHSHPGYGCWLSGIDVDTEAMQQQFQDPFLAVVID--PDRTINSGKVDIGA 182
Query: 66 FQS 68
F++
Sbjct: 183 FRT 185
>sp|Q69Z66|MYSM1_MOUSE Histone H2A deubiquitinase MYSM1 OS=Mus musculus GN=Mysm1 PE=2 SV=2
Length = 819
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 3 VLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQ-LLDTG---FIGLIFSCFS 52
L R VIGWYHSHP PS D+ TQA YQ G FIG+I S ++
Sbjct: 634 TLALRGYSVIGWYHSHPAFDPNPSLRDIDTQAKYQSYFSRGGAKFIGMIVSPYN 687
>sp|Q5VVJ2|MYSM1_HUMAN Histone H2A deubiquitinase MYSM1 OS=Homo sapiens GN=MYSM1 PE=1 SV=1
Length = 828
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 4 LTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQ-LLDTG---FIGLIFSCFSED 54
L R VIGWYHSHP PS D+ TQA YQ G FIG+I S ++ +
Sbjct: 644 LAVRGFSVIGWYHSHPAFDPNPSLRDIDTQAKYQSYFSRGGAKFIGMIVSPYNRN 698
>sp|Q9FVU9|CSN5A_ARATH COP9 signalosome complex subunit 5a OS=Arabidopsis thaliana
GN=CSN5A PE=1 SV=1
Length = 358
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 4 LTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKVGRIQV 63
L GR V+GWYHSHP S +DV TQ + Q F+ ++ G++++
Sbjct: 130 LAGRLENVVGWYHSHPGYGCWLSGIDVSTQRLNQQHQEPFLAVVID--PTRTVSAGKVEI 187
Query: 64 IAFQSSDGKQNHISKPIA---LLPVNK 87
AF++ +P++ +P+NK
Sbjct: 188 GAFRTYSKGYKPPDEPVSEYQTIPLNK 214
>sp|A0JMR6|MYSM1_XENLA Histone H2A deubiquitinase MYSM1 OS=Xenopus laevis GN=mysm1 PE=2
SV=1
Length = 818
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 4 LTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQ-LLDTG---FIGLIFSCFS 52
L R VIGWYHSHP PS D+ TQA YQ G F+G+I S ++
Sbjct: 615 LASRGYSVIGWYHSHPAFDPNPSIRDIDTQAKYQNYFSRGGAKFLGMIISPYN 667
>sp|Q6BMQ3|CSN5_DEBHA COP9 signalosome complex subunit 5 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=RRI1 PE=3 SV=2
Length = 469
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 5 TGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCF-SEDANKVGRIQV 63
GR ++GWYHSHP S +DV TQ++ Q ++ ++ +ED G++++
Sbjct: 135 VGRDENIVGWYHSHPGYGCWLSGIDVATQSLNQNFQDPYLAIVIDPMKTEDQ---GKVEI 191
Query: 64 IAFQS 68
AF++
Sbjct: 192 GAFRT 196
>sp|P43588|RPN11_YEAST 26S proteasome regulatory subunit RPN11 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN11 PE=1 SV=1
Length = 306
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 5 TGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKVGRIQVI 64
TGR V+GWYHSHP S VDV TQ ++ L++ + ++ G++ +
Sbjct: 98 TGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSVK---GKVVID 154
Query: 65 AFQSSD 70
AF+ D
Sbjct: 155 AFRLID 160
>sp|Q4P804|CSN5_USTMA COP9 signalosome complex subunit 5 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=RRI1 PE=3 SV=1
Length = 406
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 6 GRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKV---GRIQ 62
GR V+GWYHSHP S +DV TQ Q F+ ++ D N+ G++
Sbjct: 136 GRLENVVGWYHSHPGYGCWLSGIDVNTQRTNQQFQDPFVAIVI-----DPNRTISSGKVD 190
Query: 63 VIAFQS 68
+ AF++
Sbjct: 191 IGAFRT 196
>sp|P91001|CSN5_CAEEL COP9 signalosome complex subunit 5 OS=Caenorhabditis elegans
GN=csn-5 PE=1 SV=1
Length = 368
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 1 MTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKVGR 60
M GR +V+GWYHSHP S +DV TQ + Q ++ ++ G+
Sbjct: 124 MCDTEGRKEKVVGWYHSHPGYGCWLSGIDVSTQTLNQKFQEPWVAIVIDPLR--TMSAGK 181
Query: 61 IQVIAFQS 68
+ + AF++
Sbjct: 182 VDIGAFRT 189
>sp|Q6FKS1|RPN11_CANGA 26S proteasome regulatory subunit RPN11 OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=RPN11 PE=3 SV=1
Length = 306
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 5 TGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKVGRIQVI 64
TGR V+GWYHSHP S VDV TQ ++ L+ + ++ G++ +
Sbjct: 98 TGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNNRAVAVVVDPIQSVK---GKVVID 154
Query: 65 AFQSSD 70
AF+ D
Sbjct: 155 AFRLID 160
>sp|Q7RXX8|CSN5_NEUCR COP9 signalosome complex subunit 5 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=rri-1 PE=1 SV=1
Length = 336
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 18/129 (13%)
Query: 7 RTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKV---GRIQV 63
R VIGWYHSHP S +DV TQ++ Q + F+ ++ D ++ ++++
Sbjct: 118 RLENVIGWYHSHPGYGCWLSGIDVGTQSLQQQFNEPFVAVVI-----DPDRTVSQNKVEI 172
Query: 64 IAFQSSDGKQNHISKPIALLPVNKSTVIDLES-SLSSSESLSARSGNVLAENPE--QDTG 120
AF++ I + I +T D +S L+ E A S A + E + T
Sbjct: 173 GAFRT-------IPEGIKPFAATNTTTGDGQSVPLNKVEDFGAHSHRYYALDVEHFKSTL 225
Query: 121 DSKIVAGSW 129
DSK++ W
Sbjct: 226 DSKLLETLW 234
>sp|Q5RGA4|MYSM1_DANRE Histone H2A deubiquitinase MYSM1 OS=Danio rerio GN=mysm1 PE=2 SV=2
Length = 822
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 3 VLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQ-LLDTG---FIGLIFSCF 51
VL + V+GWYHSHP PS D+ TQA YQ G FIG+I S +
Sbjct: 583 VLGVKGLSVVGWYHSHPAFDPNPSLRDIDTQAKYQSYFSRGGAPFIGMIVSPY 635
>sp|Q6C703|CSN5_YARLI COP9 signalosome complex subunit 5 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=RRI1 PE=3 SV=1
Length = 354
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 5 TGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANK---VGRI 61
GR ++GWYHSHP S +DV TQ Q F+ ++ D N+ G++
Sbjct: 128 VGRRENIVGWYHSHPGYGCWLSGIDVDTQFQNQQFQEPFLAVVV-----DPNRTISAGKV 182
Query: 62 QVIAFQS 68
++ AF++
Sbjct: 183 EIGAFRT 189
>sp|Q750E9|RPN11_ASHGO 26S proteasome regulatory subunit RPN11 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=RPN11 PE=3 SV=1
Length = 311
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%)
Query: 5 TGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKV 58
TGR V+GWYHSHP S VDV TQ ++ L++ + ++ KV
Sbjct: 103 TGRDQMVVGWYHSHPGFGCWLSSVDVDTQRSFEQLNSRAVAVVVDPIQSVKGKV 156
>sp|Q9LT08|PSDE_ARATH 26S proteasome non-ATPase regulatory subunit 14 OS=Arabidopsis
thaliana GN=RPN11 PE=2 SV=1
Length = 308
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 5 TGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKVGRIQVI 64
TGR V+GWYHSHP S VD+ TQ ++ L+ + ++ G++ +
Sbjct: 101 TGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK---GKVVID 157
Query: 65 AFQS 68
AF+S
Sbjct: 158 AFRS 161
>sp|Q86IJ1|PSDE_DICDI 26S proteasome non-ATPase regulatory subunit 14 OS=Dictyostelium
discoideum GN=psmD14 PE=3 SV=1
Length = 306
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 5 TGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKVGRIQVI 64
TGR VIGWYHSHP S VDV TQ ++ L + + ++ + G++ +
Sbjct: 102 TGRDEIVIGWYHSHPGFGCWLSSVDVNTQQSFEQLQSRAVAVVVDPLQ---SVRGKVVID 158
Query: 65 AFQS 68
AF++
Sbjct: 159 AFRT 162
>sp|Q3TV65|MPND_MOUSE MPN domain-containing protein OS=Mus musculus GN=Mpnd PE=2 SV=2
Length = 487
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 3 VLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQL 38
VL R ++GWYHSHPH +PS D+ Q YQL
Sbjct: 322 VLFLRGLSLVGWYHSHPHSPAVPSLQDIDAQMEYQL 357
>sp|Q54PF3|CSN5_DICDI COP9 signalosome complex subunit 5 OS=Dictyostelium discoideum
GN=csn5 PE=1 SV=1
Length = 332
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 5 TGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKVGRIQVI 64
TGR +GWYHSHP S +DV TQ++ Q ++G++ G++++
Sbjct: 126 TGRLENALGWYHSHPGYGCWLSGIDVGTQSVNQQYSEPWLGIVID--PTRTVSAGKVEIG 183
Query: 65 AFQS 68
AF++
Sbjct: 184 AFRT 187
>sp|O76577|PSDE_CAEEL 26S proteasome non-ATPase regulatory subunit 14 OS=Caenorhabditis
elegans GN=rpn-11 PE=1 SV=1
Length = 312
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 5 TGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKVGRIQVI 64
TGR V+GWYHSHP S VD+ TQ ++ L + ++ G++ +
Sbjct: 104 TGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSDRAVAVVVDPIQSVK---GKVVID 160
Query: 65 AFQS 68
AF++
Sbjct: 161 AFRT 164
>sp|Q4WZP2|CSN5_ASPFU COP9 signalosome complex subunit 5 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=csn5
PE=3 SV=2
Length = 334
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 6 GRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKVGRIQVIA 65
GR +GWYHSHP S +DV TQ M Q L F+ ++ E G++ + A
Sbjct: 124 GRMENAVGWYHSHPGYGCWLSGIDVTTQDMQQ-LGGPFVAVVID--PERTISAGKVDIGA 180
Query: 66 FQS 68
F++
Sbjct: 181 FRT 183
>sp|O35864|CSN5_MOUSE COP9 signalosome complex subunit 5 OS=Mus musculus GN=Cops5 PE=1
SV=3
Length = 334
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 5 TGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIF 48
GR IGWYHSHP S +DV TQ + Q F+ ++
Sbjct: 127 VGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVI 170
>sp|Q92905|CSN5_HUMAN COP9 signalosome complex subunit 5 OS=Homo sapiens GN=COPS5 PE=1
SV=4
Length = 334
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 5 TGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIF 48
GR IGWYHSHP S +DV TQ + Q F+ ++
Sbjct: 127 VGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVI 170
>sp|Q6PC30|CSN5_DANRE COP9 signalosome complex subunit 5 OS=Danio rerio GN=cops5 PE=2
SV=1
Length = 334
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 5 TGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIF 48
GR IGWYHSHP S +DV TQ + Q F+ ++
Sbjct: 125 VGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVI 168
>sp|Q5BBF1|CSN5_EMENI COP9 signalosome complex subunit 5 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=rri1 PE=1 SV=2
Length = 335
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 6 GRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKVGRIQVIA 65
GR +GWYHSHP S +DV TQ M Q + F+ ++ E G++ + A
Sbjct: 124 GRMENAVGWYHSHPGYGCWLSGIDVSTQDMQQ-MSGPFVAVVID--PERTISAGKVDIGA 180
Query: 66 FQS-----SDGKQNHISKPIALLPVNKS 88
F++ + K+ +P+NK+
Sbjct: 181 FRTFPKDYTPPKEEQEEDEYQTVPLNKA 208
>sp|Q6P635|CSN5_XENTR COP9 signalosome complex subunit 5 OS=Xenopus tropicalis GN=cops5
PE=2 SV=1
Length = 334
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 5 TGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIF 48
GR IGWYHSHP S +DV TQ + Q F+ ++
Sbjct: 127 VGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVI 170
>sp|Q6GLM9|CSN5_XENLA COP9 signalosome complex subunit 5 OS=Xenopus laevis GN=cops5 PE=2
SV=1
Length = 332
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 5 TGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIF 48
GR IGWYHSHP S +DV TQ + Q F+ ++
Sbjct: 125 VGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVI 168
>sp|Q9V3H2|PSDE_DROME 26S proteasome non-ATPase regulatory subunit 14 OS=Drosophila
melanogaster GN=Rpn11 PE=1 SV=1
Length = 308
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 5 TGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKV 58
TGR V+GWYHSHP S VD+ TQ ++ L + ++ KV
Sbjct: 100 TGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKGKV 153
>sp|Q8N594|MPND_HUMAN MPN domain-containing protein OS=Homo sapiens GN=MPND PE=1 SV=1
Length = 471
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 7 RTTRVIGWYHSHPHITVLPSHVDVRTQAMYQL 38
R ++GWYHSHPH LPS D+ Q YQL
Sbjct: 340 RGLSLVGWYHSHPHSPALPSLQDIDAQMDYQL 371
>sp|B6MUN4|MYSM1_BRAFL Histone H2A deubiquitinase MYSM1 OS=Branchiostoma floridae GN=MYSM1
PE=3 SV=1
Length = 809
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 11 VIGWYHSHPHITVLPSHVDVRTQAMYQLL----DTGFIGLIFSCFS 52
V+GWYHSHP PS D+ TQ +Q + FIG+I + +S
Sbjct: 666 VVGWYHSHPTFAPNPSVRDIETQTKFQEWFAQGGSPFIGIIVNPYS 711
>sp|P41878|RPN11_SCHPO 26S proteasome regulatory subunit rpn11 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpn11 PE=1 SV=2
Length = 308
Score = 40.8 bits (94), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 5 TGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKV 58
TGR V+GWYHSHP S VD+ TQ ++ L + ++ KV
Sbjct: 101 TGRPEMVVGWYHSHPGFGCWLSSVDINTQQSFEQLTPRAVAVVVDPIQSVKGKV 154
>sp|O35593|PSDE_MOUSE 26S proteasome non-ATPase regulatory subunit 14 OS=Mus musculus
GN=Psmd14 PE=1 SV=2
Length = 310
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 5 TGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKV 58
TGR V+GWYHSHP S VD+ TQ ++ L + ++ KV
Sbjct: 102 TGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKGKV 155
>sp|O00487|PSDE_HUMAN 26S proteasome non-ATPase regulatory subunit 14 OS=Homo sapiens
GN=PSMD14 PE=1 SV=1
Length = 310
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 5 TGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKV 58
TGR V+GWYHSHP S VD+ TQ ++ L + ++ KV
Sbjct: 102 TGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKGKV 155
>sp|Q54Z40|MYBH_DICDI Myb-like protein H OS=Dictyostelium discoideum GN=mybH PE=3 SV=1
Length = 1217
Score = 40.4 bits (93), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 11 VIGWYHSHPHITVLPSHVDVRTQAMYQLL 39
++GWYHSHP+ +PS D+ TQ +Q L
Sbjct: 852 IVGWYHSHPNFEPIPSLRDIETQTSFQNL 880
>sp|A6ZXB7|CSN5_YEAS7 COP9 signalosome complex subunit 5 OS=Saccharomyces cerevisiae
(strain YJM789) GN=RRI1 PE=3 SV=2
Length = 440
Score = 40.4 bits (93), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 6 GRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKVGRIQVIA 65
G V+GW+HSHP S++D++TQ + Q ++ ++ +K+ R+ A
Sbjct: 154 GAKLNVVGWFHSHPGYDCWLSNIDIQTQDLNQRFQDPYVAIVVDPLKSLEDKILRMG--A 211
Query: 66 FQSSDGK 72
F++ + K
Sbjct: 212 FRTIESK 218
>sp|Q12468|CSN5_YEAST COP9 signalosome complex subunit 5 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RRI1 PE=1 SV=2
Length = 440
Score = 40.4 bits (93), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 6 GRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKVGRIQVIA 65
G V+GW+HSHP S++D++TQ + Q ++ ++ +K+ R+ A
Sbjct: 154 GAKLNVVGWFHSHPGYDCWLSNIDIQTQDLNQRFQDPYVAIVVDPLKSLEDKILRMG--A 211
Query: 66 FQSSDGK 72
F++ + K
Sbjct: 212 FRTIESK 218
>sp|Q9XZ58|CSN5_DROME COP9 signalosome complex subunit 5 OS=Drosophila melanogaster
GN=CSN5 PE=1 SV=1
Length = 327
Score = 40.4 bits (93), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 5 TGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLI 47
GR +GWYHSHP S +DV TQ + Q F+ ++
Sbjct: 124 VGRMEHAVGWYHSHPGYGCWLSGIDVSTQMLNQTYQEPFVAIV 166
>sp|B3LH96|CSN5_YEAS1 COP9 signalosome complex subunit 5 OS=Saccharomyces cerevisiae
(strain RM11-1a) GN=RRI1 PE=3 SV=2
Length = 440
Score = 40.4 bits (93), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 6 GRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKVGRIQVIA 65
G V+GW+HSHP S++D++TQ + Q ++ ++ +K+ R+ A
Sbjct: 154 GAKLNVVGWFHSHPGYDCWLSNIDIQTQDLNQRFQDPYVAIVVDPLKSLEDKILRMG--A 211
Query: 66 FQSSDGK 72
F++ + K
Sbjct: 212 FRTIESK 218
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125,604,744
Number of Sequences: 539616
Number of extensions: 5115938
Number of successful extensions: 11479
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 11250
Number of HSP's gapped (non-prelim): 232
length of query: 350
length of database: 191,569,459
effective HSP length: 118
effective length of query: 232
effective length of database: 127,894,771
effective search space: 29671586872
effective search space used: 29671586872
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)