Query 018828
Match_columns 350
No_of_seqs 153 out of 347
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 06:41:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018828.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018828hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_V 26S proteasome regulato 100.0 5.5E-33 1.9E-37 263.7 0.9 139 1-148 94-237 (306)
2 2znr_A AMSH-like protease; met 99.7 1.3E-17 4.6E-22 147.5 5.5 61 5-73 78-138 (178)
3 3rzv_A STAM-binding protein; u 99.6 1.7E-16 5.7E-21 145.1 6.0 60 6-73 112-171 (211)
4 2kcq_A MOV34/MPN/PAD-1 family; 99.4 1.1E-13 3.7E-18 118.1 6.3 67 6-83 73-140 (153)
5 2kks_A Uncharacterized protein 99.3 1.8E-12 6.3E-17 109.7 4.5 57 6-72 71-127 (146)
6 2o95_A 26S proteasome non-ATPa 99.2 8.3E-12 2.8E-16 109.2 5.0 62 2-71 83-144 (187)
7 1oi0_A AF2198, hypothetical pr 99.0 3.6E-10 1.2E-14 93.3 4.9 51 7-68 61-111 (124)
8 4e0q_A COP9 signalosome comple 98.8 3.8E-10 1.3E-14 96.6 -1.5 61 1-68 78-138 (141)
9 2og4_A PRE-mRNA-splicing facto 98.7 1.9E-08 6.5E-13 94.7 6.3 62 6-73 107-169 (254)
10 2p8r_A PRP8, PRE-mRNA-splicing 98.5 1.2E-07 4.1E-12 90.1 6.2 60 7-72 107-171 (273)
11 4b4t_U RPN8, 26S proteasome re 97.4 9.9E-05 3.4E-09 70.8 4.5 62 1-70 79-141 (338)
12 3sbg_A PRE-mRNA-splicing facto 96.9 0.00058 2E-08 70.1 4.5 61 7-73 419-480 (565)
13 3mq9_A Bone marrow stromal ant 61.5 15 0.0005 35.3 6.5 73 225-305 387-459 (471)
14 2wq1_A General control protein 56.6 24 0.00083 24.0 5.0 29 277-305 2-30 (33)
15 1nkp_B MAX protein, MYC proto- 51.9 30 0.001 26.4 5.6 31 277-307 49-79 (83)
16 2oqq_A Transcription factor HY 50.4 33 0.0011 24.4 5.1 29 277-305 5-33 (42)
17 1dip_A Delta-sleep-inducing pe 49.3 75 0.0026 25.2 7.5 30 276-305 16-45 (78)
18 2yy0_A C-MYC-binding protein; 44.5 42 0.0014 24.4 5.1 31 277-307 21-51 (53)
19 1gk7_A Vimentin; intermediate 43.0 49 0.0017 22.8 5.0 30 276-305 7-36 (39)
20 1kd8_B GABH BLL, GCN4 acid bas 42.5 53 0.0018 22.7 5.0 29 277-305 3-31 (36)
21 2lq4_p Lysophosphatidic acid r 42.1 1.4 4.6E-05 34.5 -3.3 29 278-306 2-30 (80)
22 3c3f_A Alpha/beta peptide with 41.1 59 0.002 22.2 5.0 29 277-305 3-31 (34)
23 2oxj_A Hybrid alpha/beta pepti 38.5 68 0.0023 21.9 5.0 29 277-305 3-31 (34)
24 1kd8_A GABH AIV, GCN4 acid bas 37.2 50 0.0017 22.8 4.2 29 277-305 3-31 (36)
25 3c3g_A Alpha/beta peptide with 34.6 87 0.003 21.3 5.0 29 277-305 2-30 (33)
26 3mq9_A Bone marrow stromal ant 33.7 82 0.0028 30.1 6.8 25 282-306 443-467 (471)
27 1ci6_A Transcription factor AT 33.5 71 0.0024 23.6 5.0 28 278-305 26-53 (63)
28 1nlw_A MAD protein, MAX dimeri 31.6 78 0.0027 24.4 5.1 38 264-306 41-78 (80)
29 1ydx_A Type I restriction enzy 31.5 80 0.0027 29.0 6.1 32 279-310 366-397 (406)
30 3nmd_A CGMP dependent protein 31.4 76 0.0026 24.8 5.0 29 277-305 35-63 (72)
31 1wt6_A Myotonin-protein kinase 31.3 80 0.0027 25.2 5.2 31 276-306 39-69 (81)
32 1yf2_A Type I restriction-modi 30.6 66 0.0023 29.0 5.3 31 279-309 390-420 (425)
33 1jnm_A Proto-oncogene C-JUN; B 30.4 93 0.0032 22.6 5.1 30 277-306 24-53 (62)
34 3c3g_A Alpha/beta peptide with 29.9 48 0.0017 22.5 3.1 25 283-307 1-25 (33)
35 2gkw_A TNF receptor-associated 29.9 67 0.0023 27.6 5.0 29 277-305 2-30 (192)
36 1uo4_A General control protein 29.6 70 0.0024 21.9 3.9 29 277-305 3-31 (34)
37 3oja_B Anopheles plasmodium-re 28.3 70 0.0024 31.2 5.4 28 279-306 548-575 (597)
38 2qlc_A DNA repair protein RADC 28.1 42 0.0014 27.9 3.3 30 9-38 68-98 (126)
39 2oxj_A Hybrid alpha/beta pepti 27.8 55 0.0019 22.4 3.1 25 283-307 2-26 (34)
40 3m48_A General control protein 26.9 78 0.0027 21.5 3.7 27 278-304 3-29 (33)
41 4h8s_A DCC-interacting protein 26.7 2E+02 0.007 27.0 8.2 56 256-311 228-283 (407)
42 2oqq_A Transcription factor HY 26.3 1.1E+02 0.0038 21.7 4.6 30 277-306 12-41 (42)
43 3c3f_A Alpha/beta peptide with 26.3 61 0.0021 22.1 3.1 26 282-307 1-26 (34)
44 2dgc_A Protein (GCN4); basic d 26.2 84 0.0029 23.3 4.3 24 282-305 30-53 (63)
45 1nkp_A C-MYC, MYC proto-oncoge 26.1 1E+02 0.0035 24.1 5.0 30 277-306 54-83 (88)
46 3ni0_A Bone marrow stromal ant 26.0 2.4E+02 0.0083 23.2 7.3 21 286-306 64-84 (99)
47 3m48_A General control protein 25.9 53 0.0018 22.3 2.8 25 283-307 1-25 (33)
48 3gyr_A PHS, phenoxazinone synt 25.2 19 0.00065 35.5 0.7 7 14-20 169-175 (612)
49 1t2k_D Cyclic-AMP-dependent tr 25.1 1.2E+02 0.0042 21.8 5.0 29 277-305 24-52 (61)
50 3seo_A VOPL C terminal domain 24.5 58 0.002 30.4 3.8 44 252-295 189-237 (241)
51 3aw5_A Multicopper oxidase; be 24.2 20 0.0007 34.9 0.7 10 12-21 99-108 (448)
52 2rh2_A Dihydrofolate reductase 24.0 31 0.0011 25.8 1.5 9 9-17 24-32 (62)
53 3nm8_A Tyrosinase; TYPE3 coppe 23.9 9.3 0.00032 36.3 -1.7 30 228-257 14-43 (303)
54 2zqm_A Prefoldin beta subunit 23.8 1.2E+02 0.0042 23.5 5.2 27 277-303 72-98 (117)
55 2r2v_A GCN4 leucine zipper; co 23.8 1.7E+02 0.0059 19.9 5.0 29 277-305 3-31 (34)
56 3viq_B Mating-type switching p 23.0 80 0.0027 25.3 3.8 29 278-306 4-32 (85)
57 2fxo_A Myosin heavy chain, car 22.8 1.2E+02 0.004 25.0 5.0 30 276-305 84-113 (129)
58 1zme_C Proline utilization tra 22.2 50 0.0017 23.4 2.3 20 277-296 46-65 (70)
59 2wt7_A Proto-oncogene protein 22.0 1.5E+02 0.0051 21.6 4.9 29 277-305 25-53 (63)
60 1hfu_A Laccase 1; oxidoreducta 21.8 42 0.0014 33.1 2.4 9 12-20 105-113 (503)
61 2bni_A General control protein 21.4 79 0.0027 21.6 3.0 26 278-303 4-29 (34)
62 1fxk_A Prefoldin; archaeal pro 21.3 1.5E+02 0.0052 22.7 5.2 30 276-305 66-95 (107)
63 1zpu_A Iron transport multicop 21.1 47 0.0016 33.2 2.6 8 13-20 102-109 (534)
64 2wq1_A General control protein 20.8 91 0.0031 21.2 3.1 25 283-307 1-25 (33)
65 1v10_A Laccase; multicopper bl 20.6 46 0.0016 33.0 2.4 9 12-20 126-134 (521)
66 3azd_A Short alpha-tropomyosin 20.4 31 0.001 23.5 0.8 31 275-305 4-34 (37)
67 2xu9_A Laccase; oxidoreductase 20.4 28 0.00095 33.6 0.8 9 12-20 108-116 (439)
68 1yf2_A Type I restriction-modi 20.3 1.5E+02 0.0053 26.6 5.7 31 279-309 180-210 (425)
69 1kd8_B GABH BLL, GCN4 acid bas 20.2 93 0.0032 21.5 3.1 26 282-307 1-26 (36)
70 3zx1_A Oxidoreductase, putativ 20.1 28 0.00097 34.6 0.8 10 12-21 144-153 (481)
No 1
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.5e-33 Score=263.71 Aligned_cols=139 Identities=21% Similarity=0.224 Sum_probs=95.3
Q ss_pred CccccCCCCceeeeeccCCCCCCCCChHHHHhHHHhhhhCcCceEEEeccccccccccCceEEEEEEeeCCCCccc---c
Q 018828 1 MTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHI---S 77 (350)
Q Consensus 1 M~~~~gR~l~VVGWYHSHP~~~~~PS~vDV~TQ~~yQ~~~~pfVaLIvSP~~~d~~s~Gkv~i~AFR~~~~~~~~~---~ 77 (350)
|+++++|++++||||||||+|+||||++||+||..||.+.++|||||+||+++ ..|++.++|||++++..... +
T Consensus 94 ~~~~v~~~~~vVGWYhShP~~~~~~S~~Di~tq~~yQ~~~~~~V~lV~Dp~~t---~~G~~~i~Afr~~~~~~~~~~~~~ 170 (306)
T 4b4t_V 94 MLKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQS---VKGKVVIDAFRLIDTGALINNLEP 170 (306)
T ss_dssp HHHHHSCCCCCSEEEEECCSSSCCCCHHHHHHHHHHHHHCSSCEEEEECSSSS---SSCSSCEEEEECCHHHHHHCCCCC
T ss_pred HHHHhCCCcceeeEEecCCCCCCcCCHHHHHHHHHHHhcCCCcEEEEECCCcC---CCCceeeeEEEecCccccccccCc
Confidence 46788999999999999999999999999999999999999999999999863 35899999999998654321 1
Q ss_pred --CCcccccCCCcchhcccccCCccccccccccccccCCccccccccccccccccCCCccccCCCccccccCC
Q 018828 78 --KPIALLPVNKSTVIDLESSLSSSESLSARSGNVLAENPEQDTGDSKIVAGSWKGGGRTSELGGFFANVDAN 148 (350)
Q Consensus 78 --rp~~~~pl~k~siid~~~~~g~~~~YYsl~i~~~~~~~e~~~l~s~~v~l~~K~W~~tl~l~~f~~n~d~N 148 (350)
...+.+++.++.+.++.++++.+ ||+|+|+|+++.+|+++|+ .||+|+|.++|++.+|..+.+.|
T Consensus 171 ~~~~s~~~~~~~~~~~~~~~~~~~~--yy~l~i~~~ks~le~~~L~----~L~~~~w~~~l~~~~~~~~~~~~ 237 (306)
T 4b4t_V 171 RQTTSNTGLLNKANIQALIHGLNRH--YYSLNIDYHKTAKETKMLM----NLHKEQWQSGLKMYDYEEKEESN 237 (306)
T ss_dssp SCC------------------------CEEECSCCCCCSSCTHHHH----HHHHC----------CHHHHHHH
T ss_pred ccccccccccCchhhhhhhccccce--EEEeeeEEEeCcHHHHHHH----HHHhcccccccccCcHHHHHHHH
Confidence 23567788888888888777766 9999999999999999999 99999999999999998887766
No 2
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=99.69 E-value=1.3e-17 Score=147.52 Aligned_cols=61 Identities=26% Similarity=0.418 Sum_probs=55.0
Q ss_pred cCCCCceeeeeccCCCCCCCCChHHHHhHHHhhhhCcCceEEEeccccccccccCceEEEEEEeeCCCC
Q 018828 5 TGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQ 73 (350)
Q Consensus 5 ~gR~l~VVGWYHSHP~~~~~PS~vDV~TQ~~yQ~~~~pfVaLIvSP~~~d~~s~Gkv~i~AFR~~~~~~ 73 (350)
.++++.+||||||||+++||||.+|++||..||++++++|+|||||... .++|||+++++.
T Consensus 78 ~~~~l~~vGwyHSHP~~~~~pS~~Dv~tq~~yq~~~~~~v~iIvsp~~~--------~~~afrl~~~g~ 138 (178)
T 2znr_A 78 DQHDLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHK--------DTGIFRLTNAGM 138 (178)
T ss_dssp HHHTCEEEEEEEECSSSCSCCCHHHHHHHHHHHHHCTTCEEEEEEGGGT--------EEEEEEECHHHH
T ss_pred HhCCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhcCCEEEEEEcCCCC--------cceEEEEECCcE
Confidence 3578999999999999999999999999999999999999999999751 279999997654
No 3
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=99.63 E-value=1.7e-16 Score=145.14 Aligned_cols=60 Identities=25% Similarity=0.373 Sum_probs=54.5
Q ss_pred CCCCceeeeeccCCCCCCCCChHHHHhHHHhhhhCcCceEEEeccccccccccCceEEEEEEeeCCCC
Q 018828 6 GRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQ 73 (350)
Q Consensus 6 gR~l~VVGWYHSHP~~~~~PS~vDV~TQ~~yQ~~~~pfVaLIvSP~~~d~~s~Gkv~i~AFR~~~~~~ 73 (350)
.+++.+||||||||+++||||.+||.||..||.+.+++|+|||||.. ..++|||+++.+.
T Consensus 112 ~~~l~~vGWyHSHP~~~~~pS~~Dl~tq~~~q~~~~~~I~IVvsP~~--------~~lgaFrLtp~G~ 171 (211)
T 3rzv_A 112 QQGLITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCSPKF--------QETGFFKLTDHGL 171 (211)
T ss_dssp HHTCEEEEEEEECTTSCSCCCHHHHHHHHHHHHHCTTCEEEEEETTT--------TEEEEEEECHHHH
T ss_pred hCCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCC--------CeeeEEEeccchh
Confidence 36899999999999999999999999999999999999999999964 1599999997654
No 4
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=99.43 E-value=1.1e-13 Score=118.08 Aligned_cols=67 Identities=25% Similarity=0.342 Sum_probs=50.4
Q ss_pred CCCCceeeeeccCCCCCCCCChHHHHhHHHhhhhCcCceEEEeccccccccccCc-eEEEEEEeeCCCCccccCCcccc
Q 018828 6 GRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKVGR-IQVIAFQSSDGKQNHISKPIALL 83 (350)
Q Consensus 6 gR~l~VVGWYHSHP~~~~~PS~vDV~TQ~~yQ~~~~pfVaLIvSP~~~d~~s~Gk-v~i~AFR~~~~~~~~~~rp~~~~ 83 (350)
.+++.+||||||||+++||||.+|+.++ ..+++++|||++.+ |+ ..+.|||+.+.+..-.+.++.+.
T Consensus 73 ~~g~~ivG~yHSHP~~~~~PS~~D~~~~-----~~~~~~~lIvs~~~------~~~~~~~af~~~~~~g~~~e~~i~v~ 140 (153)
T 2kcq_A 73 EQGLDVVGVYHSHPDHPARPSATDLEEA-----TFPGFTYVIVSVRD------GAPEALTAWALAPDRSEFHREDIVRP 140 (153)
T ss_dssp HHTCEEEEEEEECSSSSSSCCHHHHHTC-----CCTTSEEEEEEEET------TEEEEEEEEEECTTCSCEEEECCBCC
T ss_pred HCCCeEEEEEeCCCCCCCCCCHHHHHhh-----hcCCCeEEEEECCC------CCccEEEEEEEeCCCCcEEEEEEEEe
Confidence 3568999999999999999999998754 35899999999864 34 47999999654433223344443
No 5
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=99.28 E-value=1.8e-12 Score=109.74 Aligned_cols=57 Identities=25% Similarity=0.244 Sum_probs=46.5
Q ss_pred CCCCceeeeeccCCCCCCCCChHHHHhHHHhhhhCcCceEEEeccccccccccCceEEEEEEeeCCC
Q 018828 6 GRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQSSDGK 72 (350)
Q Consensus 6 gR~l~VVGWYHSHP~~~~~PS~vDV~TQ~~yQ~~~~pfVaLIvSP~~~d~~s~Gkv~i~AFR~~~~~ 72 (350)
.+++.+||||||||+++||||.+|+.+|. .+++++||+++.. .+...+.|||..++.
T Consensus 71 ~~g~~ivG~~HSHP~~~~~PS~~D~~~~~-----~~~~~~lIvs~~~-----~~~~~~~af~~~~~~ 127 (146)
T 2kks_A 71 KNGWVMLGNFHSHPATPARPSAEDKRLAF-----DPSLSYLIISLAE-----PQKPVCKSFLIKKDG 127 (146)
T ss_dssp HHTCEEEEEEEEESSSCSSCCHHHHTTCC-----SSSCEEEEEECSC-----SSSCEEEEEEECSSC
T ss_pred HCCCEEEEEEeCCCcCCCCCCHHHHHhhh-----cCCCeEEEEEccC-----CCceEEEEEEEeCCe
Confidence 46789999999999999999999999642 4789999999854 124579999995543
No 6
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=99.20 E-value=8.3e-12 Score=109.22 Aligned_cols=62 Identities=16% Similarity=0.306 Sum_probs=53.3
Q ss_pred ccccCCCCceeeeeccCCCCCCCCChHHHHhHHHhhhhCcCceEEEeccccccccccCceEEEEEEeeCC
Q 018828 2 TVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQSSDG 71 (350)
Q Consensus 2 ~~~~gR~l~VVGWYHSHP~~~~~PS~vDV~TQ~~yQ~~~~pfVaLIvSP~~~d~~s~Gkv~i~AFR~~~~ 71 (350)
.+++++++++||||||||++ |..|+.+|..||.+.+++|+||+||... .+++.+.||++.+.
T Consensus 83 ~~~v~~~~~iVGWY~s~~~~----s~~d~~i~~~~~~~~~~~v~Livd~~~~----~~~l~i~ay~~~~~ 144 (187)
T 2o95_A 83 FKKVNARERIVGWYHTGPKL----HKNDIAINELMKRYCPNSVLVIIDVKPK----DLGLPTEAYISVEE 144 (187)
T ss_dssp HHTTSSSCEEEEEEECCSSC----CTTHHHHHHHHTTTCTTCEEEEECCCTT----C-CCSEEEEEEEEE
T ss_pred HHHhCCCCCEEEEEcCCCcC----CcccHHHHHHHHhcCCCCEEEEECCCCC----CCCcCeEEEEEech
Confidence 46788999999999999987 7899999999999999999999999642 23478999999864
No 7
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=98.98 E-value=3.6e-10 Score=93.32 Aligned_cols=51 Identities=22% Similarity=0.237 Sum_probs=40.3
Q ss_pred CCCceeeeeccCCCCCCCCChHHHHhHHHhhhhCcCceEEEeccccccccccCceEEEEEEe
Q 018828 7 RTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQS 68 (350)
Q Consensus 7 R~l~VVGWYHSHP~~~~~PS~vDV~TQ~~yQ~~~~pfVaLIvSP~~~d~~s~Gkv~i~AFR~ 68 (350)
+++.+||||||||+.+||||.+|+.++. .++.+.||+++... .-.+.||+.
T Consensus 61 ~~~~ivG~~HSHP~~~~~PS~~D~~~~~-----~~~~~~lIvs~~~~------~~~~~~f~~ 111 (124)
T 1oi0_A 61 IGMKVFGTVHSHPSPSCRPSEEDLSLFT-----RFGKYHIIVCYPYD------ENSWKCYNR 111 (124)
T ss_dssp CCCEEEEEEEEESSSCCSCCHHHHHHHH-----HSCSEEEEEETTCC------TTCEEEEET
T ss_pred CCCEEEEEEEECcCCCCccCHHHHHhhh-----cCCCEEEEEEccCC------CceEEEEec
Confidence 6789999999999999999999999754 27899999996431 123666665
No 8
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=98.78 E-value=3.8e-10 Score=96.63 Aligned_cols=61 Identities=21% Similarity=0.309 Sum_probs=44.5
Q ss_pred CccccCCCCceeeeeccCCCCCCCCChHHHHhHHHhhhhCcCceEEEeccccccccccCceEEEEEEe
Q 018828 1 MTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQS 68 (350)
Q Consensus 1 M~~~~gR~l~VVGWYHSHP~~~~~PS~vDV~TQ~~yQ~~~~pfVaLIvSP~~~d~~s~Gkv~i~AFR~ 68 (350)
|.+++++.+++||||||||. |+..|+..|..|+...+..|+||+||-. ...|++-+.||++
T Consensus 78 ~~k~v~~~e~iVGWY~s~~~----~~~~d~~i~~~~~~~~~~pV~L~~Dp~~---~~~g~Lp~~ay~s 138 (141)
T 4e0q_A 78 QYKQVFSDLDFIGWYTTGDN----PTADDIKIQRQIAAINECPIMLQLNPLS---RSVDHLPLKLFES 138 (141)
T ss_dssp HHHHHSTTCEEEEEEEEEC-----------CHHHHHHHTTCCCEEEEESCSC---CCCTTHHHHHHCC
T ss_pred HHHHhCCCccEEEEEeCCCC----CCcchHHHHHHHHHHCCCCEEEEECCCc---cCCCeEEEEEEEE
Confidence 45788999999999999995 8889999999999999999999999853 2345666666654
No 9
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae}
Probab=98.67 E-value=1.9e-08 Score=94.68 Aligned_cols=62 Identities=15% Similarity=0.243 Sum_probs=54.7
Q ss_pred CCCCceeeeeccCCCCCCCCChHHHHhHHHhhh-hCcCceEEEeccccccccccCceEEEEEEeeCCCC
Q 018828 6 GRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQL-LDTGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQ 73 (350)
Q Consensus 6 gR~l~VVGWYHSHP~~~~~PS~vDV~TQ~~yQ~-~~~pfVaLIvSP~~~d~~s~Gkv~i~AFR~~~~~~ 73 (350)
..++..+||.|.||.-+|++|.+||.||..||. +++.+|+|+|+|. .|.+.++||++++.+.
T Consensus 107 l~dLe~LGWIHTqptq~~fLSs~Dl~tH~~~~~~~~~eaIaIvcsft------pgs~sl~af~LT~~G~ 169 (254)
T 2og4_A 107 TEGLELLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIFST------PGSVSLSAYNLTDEGY 169 (254)
T ss_dssp CTTCEEEEEEEEESSCCSSCCHHHHHHHHHHHTTTCTTCEEEEEEEE------TTEEEEEEEEECHHHH
T ss_pred hcCCEecceEeeCCCCCcccCHHHHHHHHHHHHhcCCCeEEEEEecC------CCCceeEEEEcChhhh
Confidence 367899999999999999999999999999998 6789999999973 3667899999987553
No 10
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A
Probab=98.49 E-value=1.2e-07 Score=90.07 Aligned_cols=60 Identities=23% Similarity=0.308 Sum_probs=52.6
Q ss_pred CCCceeeeeccCCCCCCCCChHHHHhHHHhhhh----C-cCceEEEeccccccccccCceEEEEEEeeCCC
Q 018828 7 RTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLL----D-TGFIGLIFSCFSEDANKVGRIQVIAFQSSDGK 72 (350)
Q Consensus 7 R~l~VVGWYHSHP~~~~~PS~vDV~TQ~~yQ~~----~-~pfVaLIvSP~~~d~~s~Gkv~i~AFR~~~~~ 72 (350)
.++..+||.|.||.-+|++|.+||.||..||.+ + +.+|+|+|+|. .|.+.++||++++.+
T Consensus 107 ~dLe~LGWIHTqp~e~~~LSs~Dl~tH~~~~~~~~~~~~~e~I~Ivcsft------pgs~sl~af~LT~~G 171 (273)
T 2p8r_A 107 RDFEPLGWMHTQPNELPQLSPQDVTTHAKLLTDNISWDGEKTVMITCSFT------PGSVSLTAYKLTPSG 171 (273)
T ss_dssp TTSEEEEEEEEESSCCSSCCHHHHHHHHHHHHHCTTCCTTTCEEEEEEEE------TTEEEEEEEEECHHH
T ss_pred ccccccceEeeCCCCCCCcCHHHHHHHHHHHhcccccCCCceEEEEEecC------CCCceeEEEEcChHH
Confidence 678999999999999999999999999999974 3 48999999973 367789999998754
No 11
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.41 E-value=9.9e-05 Score=70.79 Aligned_cols=62 Identities=19% Similarity=0.352 Sum_probs=47.0
Q ss_pred CccccCCCCceeeeeccCCCCCCCCChHHHHhHHHhhhhCc-CceEEEeccccccccccCceEEEEEEeeC
Q 018828 1 MTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDT-GFIGLIFSCFSEDANKVGRIQVIAFQSSD 70 (350)
Q Consensus 1 M~~~~gR~l~VVGWYHSHP~~~~~PS~vDV~TQ~~yQ~~~~-pfVaLIvSP~~~d~~s~Gkv~i~AFR~~~ 70 (350)
|.+++...+.+|||||++|. |+..|+..|..|+...+ .-|-+++++. ...+++-+.||.+.+
T Consensus 79 ~~kkV~~~e~iVGWY~tg~~----~~~~d~~Ih~~~~~~~~~~pi~l~~d~~----~~~~~lpi~aY~s~~ 141 (338)
T 4b4t_U 79 MCKKINAKEKLIGWYHSGPK----LRASDLKINELFKKYTQNNPLLLIVDVK----QQGVGLPTDAYVAIE 141 (338)
T ss_dssp HHHHHCCSCEEEEEEECCSS----CCSTHHHHHHHHGGGCCSCCCEEEECSC----CCSSSCSEEEEEEEE
T ss_pred HHhhcCccCCEEEEEecCCC----CCccHHHHHHHHHhccCCCcEEEEecCC----CCCCCcceEEEEeeh
Confidence 35678889999999999885 67789999999998764 4455666653 234567799998765
No 12
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae}
Probab=96.92 E-value=0.00058 Score=70.09 Aligned_cols=61 Identities=15% Similarity=0.259 Sum_probs=49.0
Q ss_pred CCCceeeeeccCCCCCCCCChHHHHhHHHhhhhC-cCceEEEeccccccccccCceEEEEEEeeCCCC
Q 018828 7 RTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLD-TGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQ 73 (350)
Q Consensus 7 R~l~VVGWYHSHP~~~~~PS~vDV~TQ~~yQ~~~-~pfVaLIvSP~~~d~~s~Gkv~i~AFR~~~~~~ 73 (350)
.++..+||.|.||.-.|++|.+||.||...-.-. ..+|-|.|+ ...|.+.+.||.+++.++
T Consensus 419 ~dLe~LGWIHTqp~et~fLSs~Dl~THakl~~~n~~~~I~itvs------ftPGS~SLsAy~LT~eGy 480 (565)
T 3sbg_A 419 EGLELLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIF------STPGSVSLSAYNLTDEGY 480 (565)
T ss_dssp TTCEEEEEEEEESSCCSSCCHHHHHHHHHHHSSSCTTCEEEEEE------EETTEEEEEEEEECHHHH
T ss_pred ccCEecceeeecCCcccccCHHHHHHHHHHHHhCCCCeEEEEEE------ecCCceEEEEEecCHhHH
Confidence 6789999999999999999999999998773222 256666665 235889999999998664
No 13
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=61.47 E-value=15 Score=35.30 Aligned_cols=73 Identities=11% Similarity=0.097 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCCccceeehhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018828 225 QRVLYEEERAAYNQAIMQNMSDGKVHPLTYIHHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESE 304 (350)
Q Consensus 225 q~iL~~EE~~ay~qa~~q~~~~~~~hpLt~iHh~sty~~slc~l~e~~l~P~~~~l~drl~~n~~rl~~L~~e~~~L~~e 304 (350)
.+..-+.|...+.+.++|-+ +-+-+=.--.--||+-|.+. +.-+..+|+....+.+.|+++|+.|.+.|+++
T Consensus 387 ~~~~~~~e~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (471)
T 3mq9_A 387 DGLRAVMEARNVTHLLQQEL-----TEAQKGFQDVEAQAATANHT---VMALMASLDAEKAQGQKKVEELEGEITTLNHK 458 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHhhhHHHHHHHHH-----HHHhhhHHHHHHHhhhcchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666777676543 22222222223344555443 22233445544444555555555555555554
Q ss_pred H
Q 018828 305 A 305 (350)
Q Consensus 305 ~ 305 (350)
+
T Consensus 459 ~ 459 (471)
T 3mq9_A 459 L 459 (471)
T ss_dssp H
T ss_pred H
Confidence 4
No 14
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=56.56 E-value=24 Score=23.97 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018828 277 ISALQDRLKENEIRLAMLTDEAKSLESEA 305 (350)
Q Consensus 277 ~~~l~drl~~n~~rl~~L~~e~~~L~~e~ 305 (350)
++-|+|+.+|+-.+-..|+.|...|..-+
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 46789999999999889999888887655
No 15
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=51.89 E-value=30 Score=26.37 Aligned_cols=31 Identities=13% Similarity=0.164 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018828 277 ISALQDRLKENEIRLAMLTDEAKSLESEAFK 307 (350)
Q Consensus 277 ~~~l~drl~~n~~rl~~L~~e~~~L~~e~~~ 307 (350)
|..|+++.++.+..+..|+++..+|++++..
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999853
No 16
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=50.37 E-value=33 Score=24.45 Aligned_cols=29 Identities=28% Similarity=0.452 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018828 277 ISALQDRLKENEIRLAMLTDEAKSLESEA 305 (350)
Q Consensus 277 ~~~l~drl~~n~~rl~~L~~e~~~L~~e~ 305 (350)
+..||.|.++-+.+.+.|++..--|+.|.
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN 33 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNEN 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34556666666655555555555555554
No 17
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=49.32 E-value=75 Score=25.20 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018828 276 AISALQDRLKENEIRLAMLTDEAKSLESEA 305 (350)
Q Consensus 276 ~~~~l~drl~~n~~rl~~L~~e~~~L~~e~ 305 (350)
-+..|.++++|-+-|..+|+.|..-|..-+
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 356788999999999999998888777665
No 18
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=44.49 E-value=42 Score=24.37 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018828 277 ISALQDRLKENEIRLAMLTDEAKSLESEAFK 307 (350)
Q Consensus 277 ~~~l~drl~~n~~rl~~L~~e~~~L~~e~~~ 307 (350)
+.+|+.-+.+-+.++..|+++.++|.+++.+
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6778889999999999999999999998853
No 19
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=42.98 E-value=49 Score=22.77 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018828 276 AISALQDRLKENEIRLAMLTDEAKSLESEA 305 (350)
Q Consensus 276 ~~~~l~drl~~n~~rl~~L~~e~~~L~~e~ 305 (350)
-|+.|=|||..--.++..|+.+.+.||.++
T Consensus 7 ~mq~LNdrlAsyidkVR~LE~~N~~Le~~i 36 (39)
T 1gk7_A 7 ELQELNDRFANYIDKVRFLEQQNKILLAEL 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999999999987
No 20
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=42.48 E-value=53 Score=22.70 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018828 277 ISALQDRLKENEIRLAMLTDEAKSLESEA 305 (350)
Q Consensus 277 ~~~l~drl~~n~~rl~~L~~e~~~L~~e~ 305 (350)
++-|+|+.+|-..+...|+.|...|...+
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 46688888888888888888888777655
No 21
>2lq4_p Lysophosphatidic acid receptor 1; GPCR, G protein-coupled receptor, de novo protein; NMR {Artificial gene}
Probab=42.11 E-value=1.4 Score=34.47 Aligned_cols=29 Identities=38% Similarity=0.434 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018828 278 SALQDRLKENEIRLAMLTDEAKSLESEAF 306 (350)
Q Consensus 278 ~~l~drl~~n~~rl~~L~~e~~~L~~e~~ 306 (350)
++|+..|.+|+-.|+.|+.|..+||+|+-
T Consensus 2 qalekelaqnewelqalekelaqlekelq 30 (80)
T 2lq4_p 2 QALEKELAQNEWELQALEKELAQLEKELQ 30 (80)
T ss_dssp CSSHHHHSSSSTTTHHHHTTHHHHHHHHT
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999984
No 22
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=41.09 E-value=59 Score=22.21 Aligned_cols=29 Identities=10% Similarity=0.147 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018828 277 ISALQDRLKENEIRLAMLTDEAKSLESEA 305 (350)
Q Consensus 277 ~~~l~drl~~n~~rl~~L~~e~~~L~~e~ 305 (350)
++-|+|++++--.+...|+.|...|..-+
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45677777776666666777666665544
No 23
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=38.46 E-value=68 Score=21.90 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018828 277 ISALQDRLKENEIRLAMLTDEAKSLESEA 305 (350)
Q Consensus 277 ~~~l~drl~~n~~rl~~L~~e~~~L~~e~ 305 (350)
++-|+||.++--.+-..|++|...|..-+
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 35567776666666666666666665544
No 24
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=37.22 E-value=50 Score=22.82 Aligned_cols=29 Identities=28% Similarity=0.368 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018828 277 ISALQDRLKENEIRLAMLTDEAKSLESEA 305 (350)
Q Consensus 277 ~~~l~drl~~n~~rl~~L~~e~~~L~~e~ 305 (350)
++-|+|+.++-..+-..|+.|...|+..+
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 35688888888888888888888887766
No 25
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=34.57 E-value=87 Score=21.26 Aligned_cols=29 Identities=7% Similarity=0.143 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018828 277 ISALQDRLKENEIRLAMLTDEAKSLESEA 305 (350)
Q Consensus 277 ~~~l~drl~~n~~rl~~L~~e~~~L~~e~ 305 (350)
++-|+|++++--.+-..|+.|...|..-+
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34566666666555556666665555443
No 26
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=33.71 E-value=82 Score=30.06 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 018828 282 DRLKENEIRLAMLTDEAKSLESEAF 306 (350)
Q Consensus 282 drl~~n~~rl~~L~~e~~~L~~e~~ 306 (350)
.|++|.+-++..|..+.+.+++|+.
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666666666653
No 27
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=33.49 E-value=71 Score=23.56 Aligned_cols=28 Identities=36% Similarity=0.348 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018828 278 SALQDRLKENEIRLAMLTDEAKSLESEA 305 (350)
Q Consensus 278 ~~l~drl~~n~~rl~~L~~e~~~L~~e~ 305 (350)
..|++++++-+.+-..|..++..|+.|+
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555554
No 28
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=31.64 E-value=78 Score=24.40 Aligned_cols=38 Identities=18% Similarity=0.166 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018828 264 SMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESEAF 306 (350)
Q Consensus 264 slc~l~e~~l~P~~~~l~drl~~n~~rl~~L~~e~~~L~~e~~ 306 (350)
-|.+-++| |..|+++.++.+.....|+.|.++|.+++.
T Consensus 41 iL~kA~~y-----I~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 41 LLTKAKLH-----IKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555 567899998888899999999999998874
No 29
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=31.53 E-value=80 Score=28.99 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 018828 279 ALQDRLKENEIRLAMLTDEAKSLESEAFKGSD 310 (350)
Q Consensus 279 ~l~drl~~n~~rl~~L~~e~~~L~~e~~~~~~ 310 (350)
.+.+.+..++.+++.|++-++.|..++|.|--
T Consensus 366 ~id~~i~~~~~~i~~L~~lk~~LL~~lf~G~l 397 (406)
T 1ydx_A 366 LLDQKLDQYKKELSSLTVIRDTLLKKLFPDMT 397 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 46677788888999999999999999998854
No 30
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=31.41 E-value=76 Score=24.75 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018828 277 ISALQDRLKENEIRLAMLTDEAKSLESEA 305 (350)
Q Consensus 277 ~~~l~drl~~n~~rl~~L~~e~~~L~~e~ 305 (350)
|...+.|+++-+.+|+...++.+.|..++
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888888888888888887
No 31
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=31.33 E-value=80 Score=25.24 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018828 276 AISALQDRLKENEIRLAMLTDEAKSLESEAF 306 (350)
Q Consensus 276 ~~~~l~drl~~n~~rl~~L~~e~~~L~~e~~ 306 (350)
+...++.+|++.+.|-..|..|.+.|+.++.
T Consensus 39 ~ni~~eskL~eae~rn~eL~~e~~~l~~~~e 69 (81)
T 1wt6_A 39 DNQNFASQLREAEARNRDLEAHVRQLQERME 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667888888888888888887777764
No 32
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=30.60 E-value=66 Score=29.02 Aligned_cols=31 Identities=10% Similarity=0.163 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018828 279 ALQDRLKENEIRLAMLTDEAKSLESEAFKGS 309 (350)
Q Consensus 279 ~l~drl~~n~~rl~~L~~e~~~L~~e~~~~~ 309 (350)
.|.+.+..++.+++.|++-++.|..++|.|-
T Consensus 390 ~ld~~i~~~~~~~~~l~~~k~~Ll~~l~~G~ 420 (425)
T 1yf2_A 390 SVDKSIELKKQKKEKLQRMKKKIMELLLTGK 420 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4666777888899999999999999999874
No 33
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=30.44 E-value=93 Score=22.60 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018828 277 ISALQDRLKENEIRLAMLTDEAKSLESEAF 306 (350)
Q Consensus 277 ~~~l~drl~~n~~rl~~L~~e~~~L~~e~~ 306 (350)
+..|+++.++-+..-..|..+...|+.|+.
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777777764
No 34
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=29.94 E-value=48 Score=22.51 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 018828 283 RLKENEIRLAMLTDEAKSLESEAFK 307 (350)
Q Consensus 283 rl~~n~~rl~~L~~e~~~L~~e~~~ 307 (350)
|..+-+-++..|-.++..||.|..+
T Consensus 1 RMnQLEdKvEeLl~~~~~Le~EV~R 25 (33)
T 3c3g_A 1 RMKXIEXKLXEIXSKXYHXENXLAR 25 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhhHHHHHHHH
Confidence 5677888999999999999999853
No 35
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=29.90 E-value=67 Score=27.57 Aligned_cols=29 Identities=10% Similarity=0.150 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018828 277 ISALQDRLKENEIRLAMLTDEAKSLESEA 305 (350)
Q Consensus 277 ~~~l~drl~~n~~rl~~L~~e~~~L~~e~ 305 (350)
+..||.|+++.+.++++++.+..+|+.++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (192)
T 2gkw_A 2 TGLLESQLSRHDQMLSVHDIRLADMDLRF 30 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777666666665443
No 36
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=29.59 E-value=70 Score=21.86 Aligned_cols=29 Identities=14% Similarity=0.201 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018828 277 ISALQDRLKENEIRLAMLTDEAKSLESEA 305 (350)
Q Consensus 277 ~~~l~drl~~n~~rl~~L~~e~~~L~~e~ 305 (350)
++-|+|+.++--.+...|+.|...|..-+
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 35577777777777777777777665544
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=28.35 E-value=70 Score=31.22 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018828 279 ALQDRLKENEIRLAMLTDEAKSLESEAF 306 (350)
Q Consensus 279 ~l~drl~~n~~rl~~L~~e~~~L~~e~~ 306 (350)
.++.++++.+.++..|++|...+.+|+.
T Consensus 548 ~le~~~~~~~~~~~~l~~e~~~~~~~~~ 575 (597)
T 3oja_B 548 ALEKQLDNKRAKQAELRQETSLKRQKVK 575 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666555544443
No 38
>2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics, PSI-2, structure initiative; HET: DNA; 2.30A {Chlorobium tepidum tls}
Probab=28.13 E-value=42 Score=27.95 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=24.4
Q ss_pred CceeeeeccCCCCCCCCChHHHH-hHHHhhh
Q 018828 9 TRVIGWYHSHPHITVLPSHVDVR-TQAMYQL 38 (350)
Q Consensus 9 l~VVGWYHSHP~~~~~PS~vDV~-TQ~~yQ~ 38 (350)
-..|.--|-||.-.+.||.-|+. |++..+.
T Consensus 68 A~~vIl~HNHPSG~~~PS~~D~~~T~~l~~a 98 (126)
T 2qlc_A 68 AHSIILVHNHPSGDVQPSNADKQVTSILKKA 98 (126)
T ss_dssp CSEEEEEEECSSSCCSCCHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Confidence 35677789999999999999998 6665554
No 39
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=27.76 E-value=55 Score=22.36 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 018828 283 RLKENEIRLAMLTDEAKSLESEAFK 307 (350)
Q Consensus 283 rl~~n~~rl~~L~~e~~~L~~e~~~ 307 (350)
|..+-+-++..|-.++++|++|..+
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~r 26 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXR 26 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 6778888999999999999999853
No 40
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=26.85 E-value=78 Score=21.51 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018828 278 SALQDRLKENEIRLAMLTDEAKSLESE 304 (350)
Q Consensus 278 ~~l~drl~~n~~rl~~L~~e~~~L~~e 304 (350)
+-|+||.++--.+-..|+.|...|..-
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 346666666666656666666555543
No 41
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=26.75 E-value=2e+02 Score=27.03 Aligned_cols=56 Identities=11% Similarity=0.203 Sum_probs=38.6
Q ss_pred ehhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 018828 256 HHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESEAFKGSDS 311 (350)
Q Consensus 256 Hh~sty~~slc~l~e~~l~P~~~~l~drl~~n~~rl~~L~~e~~~L~~e~~~~~~~ 311 (350)
|...+|-...+.++.--+.|.+..|...+++.+.++...+++...+.+++......
T Consensus 228 ~a~~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (407)
T 4h8s_A 228 HGQINFFKKGAEMFSKRMDSFLSSVADMVQSIQVELEAEAEKMRVSQQELLSVDES 283 (407)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 33334444444444344678889999999998888888888888888888644433
No 42
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=26.28 E-value=1.1e+02 Score=21.72 Aligned_cols=30 Identities=27% Similarity=0.312 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018828 277 ISALQDRLKENEIRLAMLTDEAKSLESEAF 306 (350)
Q Consensus 277 ~~~l~drl~~n~~rl~~L~~e~~~L~~e~~ 306 (350)
...|+.|..|-+.|+..|+.|...|.+-++
T Consensus 12 ~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 12 VKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 456899999999999999999999987653
No 43
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=26.27 E-value=61 Score=22.14 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018828 282 DRLKENEIRLAMLTDEAKSLESEAFK 307 (350)
Q Consensus 282 drl~~n~~rl~~L~~e~~~L~~e~~~ 307 (350)
.|..+-+-++..|-.++..||.|..+
T Consensus 1 eRMnQLEdKVEeLl~~~~~Le~EV~R 26 (34)
T 3c3f_A 1 XRMXQIEXKLEXILSXLYHXENEXAR 26 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 36778888999999999999999853
No 44
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=26.18 E-value=84 Score=23.30 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018828 282 DRLKENEIRLAMLTDEAKSLESEA 305 (350)
Q Consensus 282 drl~~n~~rl~~L~~e~~~L~~e~ 305 (350)
+++.+-+.+++.|+.|...|++++
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev 53 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEV 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555556666666665555
No 45
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=26.11 E-value=1e+02 Score=24.05 Aligned_cols=30 Identities=13% Similarity=0.077 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018828 277 ISALQDRLKENEIRLAMLTDEAKSLESEAF 306 (350)
Q Consensus 277 ~~~l~drl~~n~~rl~~L~~e~~~L~~e~~ 306 (350)
|..|+++.+..+.....|+.+..+|.+++.
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888899999999998874
No 46
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=26.02 E-value=2.4e+02 Score=23.20 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 018828 286 ENEIRLAMLTDEAKSLESEAF 306 (350)
Q Consensus 286 ~n~~rl~~L~~e~~~L~~e~~ 306 (350)
+.+.|++.|++|.+.|..++-
T Consensus 64 ~qq~~v~elqgEI~~Lnq~Lq 84 (99)
T 3ni0_A 64 EQQARIKELENEVTKLNQELE 84 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334567778888777776663
No 47
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=25.92 E-value=53 Score=22.30 Aligned_cols=25 Identities=24% Similarity=0.338 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 018828 283 RLKENEIRLAMLTDEAKSLESEAFK 307 (350)
Q Consensus 283 rl~~n~~rl~~L~~e~~~L~~e~~~ 307 (350)
|..+-+.++..|-.|+..|+.|..+
T Consensus 1 RM~QLE~kVEeLl~~n~~Le~EV~R 25 (33)
T 3m48_A 1 RMAQLEAKVEELLSKNWNLENEVAR 25 (33)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhHHHHHHHHH
Confidence 4567788999999999999999853
No 48
>3gyr_A PHS, phenoxazinone synthase; metalloprotein, laccase, multicopper oxidase, hexamer, oxidoreductase, antibiotic biosynthesis; 2.30A {Streptomyces antibioticus}
Probab=25.16 E-value=19 Score=35.52 Aligned_cols=7 Identities=57% Similarity=1.592 Sum_probs=6.2
Q ss_pred eeccCCC
Q 018828 14 WYHSHPH 20 (350)
Q Consensus 14 WYHSHP~ 20 (350)
|||||.+
T Consensus 169 WYHsH~~ 175 (612)
T 3gyr_A 169 WYHDHAM 175 (612)
T ss_dssp EEEECCT
T ss_pred EEeeCCC
Confidence 9999974
No 49
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=25.15 E-value=1.2e+02 Score=21.79 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018828 277 ISALQDRLKENEIRLAMLTDEAKSLESEA 305 (350)
Q Consensus 277 ~~~l~drl~~n~~rl~~L~~e~~~L~~e~ 305 (350)
+..|+++.++-+..-..|..+...|+.|+
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555554
No 50
>3seo_A VOPL C terminal domain protein; alpha helix, structural protein; 2.31A {Vibrio parahaemolyticus} PDB: 3ryl_A
Probab=24.52 E-value=58 Score=30.40 Aligned_cols=44 Identities=23% Similarity=0.347 Sum_probs=34.9
Q ss_pred cceeehhhHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHH
Q 018828 252 LTYIHHTSTYQASMCKLIEYCLSP-----AISALQDRLKENEIRLAMLT 295 (350)
Q Consensus 252 Lt~iHh~sty~~slc~l~e~~l~P-----~~~~l~drl~~n~~rl~~L~ 295 (350)
..+||.+.+-|+.+|+.|..=+-- -..-|++|+++.+.+|+.|.
T Consensus 189 ~~si~s~dsaqqdI~~Fm~~nl~~GFs~ytf~Gl~~rva~leaqlaaL~ 237 (241)
T 3seo_A 189 YSAFKNTDTAKQDITKFMKDNLQAGFSGYSYQGLTNRVAQLEAQLAALS 237 (241)
T ss_dssp HHTCCCTTTHHHHHHHHHHHHHHHTTGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccchHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHH
Confidence 467999999999999999765533 24458899998888888775
No 51
>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A {Pyrobaculum aerophilum}
Probab=24.19 E-value=20 Score=34.90 Aligned_cols=10 Identities=50% Similarity=0.800 Sum_probs=7.6
Q ss_pred eeeeccCCCC
Q 018828 12 IGWYHSHPHI 21 (350)
Q Consensus 12 VGWYHSHP~~ 21 (350)
.=|||||++-
T Consensus 99 T~wYH~H~~~ 108 (448)
T 3aw5_A 99 TYLYHPHPHG 108 (448)
T ss_dssp EEEEEECCTT
T ss_pred ceEeccCCCC
Confidence 4599999753
No 52
>2rh2_A Dihydrofolate reductase type 2; folate metabolism, plasmid-encoded R67 DHFR, TMP-resistant DHFR, antibiotic resistance, methotrexate resistance; 0.96A {Escherichia coli} SCOP: b.34.4.1 PDB: 1vif_A* 1vie_A 2gqv_A 2rk1_A* 2rk2_A* 3sfm_A 2p4t_A*
Probab=24.00 E-value=31 Score=25.82 Aligned_cols=9 Identities=33% Similarity=1.309 Sum_probs=6.8
Q ss_pred Cceeeeecc
Q 018828 9 TRVIGWYHS 17 (350)
Q Consensus 9 l~VVGWYHS 17 (350)
-.+||||-.
T Consensus 24 g~ivgwyct 32 (62)
T 2rh2_A 24 GQIVGWYCT 32 (62)
T ss_dssp EEEEEEECC
T ss_pred ceEeEEEEc
Confidence 368999953
No 53
>3nm8_A Tyrosinase; TYPE3 copper proteins, oxidoreductase; 2.00A {Bacillus megaterium} PDB: 3npy_A 3nq0_A 3nq1_A* 3ntm_A 4d87_A* 3nq5_A
Probab=23.94 E-value=9.3 Score=36.35 Aligned_cols=30 Identities=13% Similarity=0.205 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCccceeeh
Q 018828 228 LYEEERAAYNQAIMQNMSDGKVHPLTYIHH 257 (350)
Q Consensus 228 L~~EE~~ay~qa~~q~~~~~~~hpLt~iHh 257 (350)
|..+||++|.+|+..-++.+.-|-++.+|.
T Consensus 14 Ls~~Er~~yi~Av~~l~~~~~yd~fv~~H~ 43 (303)
T 3nm8_A 14 LTDTEKRDFVRTVLILKEKGIYDRYIAWHG 43 (303)
T ss_dssp CCHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 456899999999986665555555555554
No 54
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=23.83 E-value=1.2e+02 Score=23.50 Aligned_cols=27 Identities=26% Similarity=0.545 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018828 277 ISALQDRLKENEIRLAMLTDEAKSLES 303 (350)
Q Consensus 277 ~~~l~drl~~n~~rl~~L~~e~~~L~~ 303 (350)
+..|++|.+.-+.+++.|..+.+.++.
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~ 98 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNE 98 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443333
No 55
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=23.79 E-value=1.7e+02 Score=19.94 Aligned_cols=29 Identities=17% Similarity=0.222 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018828 277 ISALQDRLKENEIRLAMLTDEAKSLESEA 305 (350)
Q Consensus 277 ~~~l~drl~~n~~rl~~L~~e~~~L~~e~ 305 (350)
++-|+|+++|--.+...|..|...|..-+
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 35567777776666677777766665543
No 56
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=22.96 E-value=80 Score=25.29 Aligned_cols=29 Identities=17% Similarity=0.103 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018828 278 SALQDRLKENEIRLAMLTDEAKSLESEAF 306 (350)
Q Consensus 278 ~~l~drl~~n~~rl~~L~~e~~~L~~e~~ 306 (350)
..|+.|+++-+.+.+.|..+..++++++.
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~ 32 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLK 32 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46788888888888888888888887763
No 57
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=22.82 E-value=1.2e+02 Score=25.04 Aligned_cols=30 Identities=30% Similarity=0.433 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018828 276 AISALQDRLKENEIRLAMLTDEAKSLESEA 305 (350)
Q Consensus 276 ~~~~l~drl~~n~~rl~~L~~e~~~L~~e~ 305 (350)
-|.-|++|+.+.+-+.+.|..+++.|+.++
T Consensus 84 ~l~el~~rleeeee~~~~L~~~kkkle~e~ 113 (129)
T 2fxo_A 84 KVKEMNKRLEDEEEMNAELTAKKRKLEDEC 113 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678888888888888888888888776
No 58
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=22.25 E-value=50 Score=23.44 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018828 277 ISALQDRLKENEIRLAMLTD 296 (350)
Q Consensus 277 ~~~l~drl~~n~~rl~~L~~ 296 (350)
+..|++|+++-+.+|+.|+.
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666555544
No 59
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=21.99 E-value=1.5e+02 Score=21.62 Aligned_cols=29 Identities=24% Similarity=0.180 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018828 277 ISALQDRLKENEIRLAMLTDEAKSLESEA 305 (350)
Q Consensus 277 ~~~l~drl~~n~~rl~~L~~e~~~L~~e~ 305 (350)
+..|+++...-+..-+.|..+...|+.|+
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~ 53 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEK 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555544445555555555444
No 60
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1a65_A*
Probab=21.77 E-value=42 Score=33.07 Aligned_cols=9 Identities=56% Similarity=0.933 Sum_probs=7.2
Q ss_pred eeeeccCCC
Q 018828 12 IGWYHSHPH 20 (350)
Q Consensus 12 VGWYHSHP~ 20 (350)
-=|||||.+
T Consensus 105 T~wYH~H~~ 113 (503)
T 1hfu_A 105 TFWYHSHFG 113 (503)
T ss_dssp EEEEEECST
T ss_pred cEEEEecch
Confidence 359999984
No 61
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=21.42 E-value=79 Score=21.59 Aligned_cols=26 Identities=15% Similarity=0.256 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018828 278 SALQDRLKENEIRLAMLTDEAKSLES 303 (350)
Q Consensus 278 ~~l~drl~~n~~rl~~L~~e~~~L~~ 303 (350)
+-|+|++++--.+-..|..|...|..
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 34555555554444455555444443
No 62
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=21.29 E-value=1.5e+02 Score=22.65 Aligned_cols=30 Identities=13% Similarity=0.257 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018828 276 AISALQDRLKENEIRLAMLTDEAKSLESEA 305 (350)
Q Consensus 276 ~~~~l~drl~~n~~rl~~L~~e~~~L~~e~ 305 (350)
+...|+.|.+.-+.+++.|..+.+.++.++
T Consensus 66 ~~~~L~~~~e~i~~~i~~le~~~~~~~~~l 95 (107)
T 1fxk_A 66 LTEELQEKLETLQLREKTIERQEERVMKKL 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666655555555555544
No 63
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Probab=21.10 E-value=47 Score=33.18 Aligned_cols=8 Identities=63% Similarity=1.360 Sum_probs=6.7
Q ss_pred eeeccCCC
Q 018828 13 GWYHSHPH 20 (350)
Q Consensus 13 GWYHSHP~ 20 (350)
=|||||.+
T Consensus 102 ~wYH~H~~ 109 (534)
T 1zpu_A 102 YWYHSHTD 109 (534)
T ss_dssp EEEECCSS
T ss_pred EEEEEcCc
Confidence 49999974
No 64
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=20.78 E-value=91 Score=21.16 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 018828 283 RLKENEIRLAMLTDEAKSLESEAFK 307 (350)
Q Consensus 283 rl~~n~~rl~~L~~e~~~L~~e~~~ 307 (350)
|..|-+-++..|-.++..|+.|+.+
T Consensus 1 RMnQLEdKVEell~~~~~le~EV~R 25 (33)
T 2wq1_A 1 RMKQLEDKIEENTSKIYHNTNEIAR 25 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhhHHHHHHHHH
Confidence 5677888899999999999998853
No 65
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Probab=20.65 E-value=46 Score=33.03 Aligned_cols=9 Identities=56% Similarity=1.077 Sum_probs=7.2
Q ss_pred eeeeccCCC
Q 018828 12 IGWYHSHPH 20 (350)
Q Consensus 12 VGWYHSHP~ 20 (350)
-=|||||.+
T Consensus 126 T~wYH~H~~ 134 (521)
T 1v10_A 126 TYWYHSHLS 134 (521)
T ss_dssp EEEEEECST
T ss_pred cEEEEeccC
Confidence 359999984
No 66
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=20.42 E-value=31 Score=23.46 Aligned_cols=31 Identities=13% Similarity=0.229 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018828 275 PAISALQDRLKENEIRLAMLTDEAKSLESEA 305 (350)
Q Consensus 275 P~~~~l~drl~~n~~rl~~L~~e~~~L~~e~ 305 (350)
..+.+|+.+++.-+..+..+++++..|+.++
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567889999999999999999999998876
No 67
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A 2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A
Probab=20.40 E-value=28 Score=33.59 Aligned_cols=9 Identities=56% Similarity=1.195 Sum_probs=7.3
Q ss_pred eeeeccCCC
Q 018828 12 IGWYHSHPH 20 (350)
Q Consensus 12 VGWYHSHP~ 20 (350)
-=|||||.+
T Consensus 108 T~wYH~H~~ 116 (439)
T 2xu9_A 108 TFWYHPHLH 116 (439)
T ss_dssp EEEEECCCT
T ss_pred ceEeccCCC
Confidence 359999985
No 68
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=20.32 E-value=1.5e+02 Score=26.58 Aligned_cols=31 Identities=13% Similarity=0.144 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018828 279 ALQDRLKENEIRLAMLTDEAKSLESEAFKGS 309 (350)
Q Consensus 279 ~l~drl~~n~~rl~~L~~e~~~L~~e~~~~~ 309 (350)
.|.+.++.++.+++.|++-++.|.+++|.|.
T Consensus 180 ~ld~~i~~~~~~i~~l~~~k~~l~~~~~~~~ 210 (425)
T 1yf2_A 180 KIDEGIEIIEKSINKLERIKKGLMHKLLTKG 210 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6778888899999999999999999999864
No 69
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=20.22 E-value=93 Score=21.48 Aligned_cols=26 Identities=12% Similarity=0.239 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018828 282 DRLKENEIRLAMLTDEAKSLESEAFK 307 (350)
Q Consensus 282 drl~~n~~rl~~L~~e~~~L~~e~~~ 307 (350)
.|..+-+.++..|..++..|+.|..+
T Consensus 1 eRMnQLE~KVEeLl~~~~~Le~eV~R 26 (36)
T 1kd8_B 1 XKVKQLKAKVEELKSKLWHLKNKVAR 26 (36)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHH
Confidence 36778888999999999999998753
No 70
>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous oxidase; 1.95A {Campylobacter jejuni subsp}
Probab=20.14 E-value=28 Score=34.62 Aligned_cols=10 Identities=60% Similarity=1.421 Sum_probs=7.8
Q ss_pred eeeeccCCCC
Q 018828 12 IGWYHSHPHI 21 (350)
Q Consensus 12 VGWYHSHP~~ 21 (350)
.-|||||.+-
T Consensus 144 T~WYH~H~~~ 153 (481)
T 3zx1_A 144 TYWYHPHPHY 153 (481)
T ss_dssp EEEEECCCTT
T ss_pred eEEEeecCCC
Confidence 5699999753
Done!