Query 018829
Match_columns 350
No_of_seqs 301 out of 2324
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 06:42:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018829.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018829hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 2.9E-45 9.9E-50 359.3 18.2 217 71-325 21-266 (366)
2 3fvq_A Fe(3+) IONS import ATP- 100.0 1.8E-44 6.2E-49 353.2 17.1 208 73-323 3-239 (359)
3 3rlf_A Maltose/maltodextrin im 100.0 5.6E-44 1.9E-48 352.0 19.8 206 73-324 2-235 (381)
4 3gfo_A Cobalt import ATP-bindi 100.0 1.4E-43 4.6E-48 335.8 14.6 202 72-313 5-234 (275)
5 1oxx_K GLCV, glucose, ABC tran 100.0 5.5E-43 1.9E-47 342.4 15.6 212 73-323 2-241 (353)
6 1b0u_A Histidine permease; ABC 100.0 7.8E-43 2.7E-47 328.1 16.0 211 73-322 5-252 (262)
7 2it1_A 362AA long hypothetical 100.0 1.8E-42 6E-47 339.7 19.2 205 73-323 2-234 (362)
8 2olj_A Amino acid ABC transpor 100.0 8E-43 2.7E-47 328.5 16.0 206 73-319 23-255 (263)
9 1v43_A Sugar-binding transport 100.0 9.8E-43 3.4E-47 342.6 16.9 205 72-323 9-242 (372)
10 1z47_A CYSA, putative ABC-tran 100.0 2E-42 6.9E-47 338.4 18.7 207 71-323 11-246 (355)
11 2yyz_A Sugar ABC transporter, 100.0 2.1E-42 7.2E-47 338.8 18.2 205 73-323 2-234 (359)
12 3nh6_A ATP-binding cassette SU 100.0 3.2E-43 1.1E-47 337.9 11.8 222 52-313 23-278 (306)
13 1g29_1 MALK, maltose transport 100.0 3E-42 1E-46 339.3 18.8 210 74-323 3-240 (372)
14 3tif_A Uncharacterized ABC tra 100.0 2.6E-42 9E-47 319.6 17.0 203 74-311 1-233 (235)
15 3d31_A Sulfate/molybdate ABC t 100.0 1.4E-42 4.8E-47 338.9 15.9 201 74-324 1-229 (348)
16 1g6h_A High-affinity branched- 100.0 4.7E-42 1.6E-46 321.7 15.2 196 72-309 5-239 (257)
17 2onk_A Molybdate/tungstate ABC 100.0 5.3E-41 1.8E-45 312.0 22.0 203 74-328 1-231 (240)
18 4g1u_C Hemin import ATP-bindin 100.0 6.8E-42 2.3E-46 322.6 15.2 195 72-312 9-237 (266)
19 1vpl_A ABC transporter, ATP-bi 100.0 2.2E-41 7.4E-46 317.5 17.2 197 71-313 12-236 (256)
20 2pcj_A ABC transporter, lipopr 100.0 4.8E-41 1.7E-45 308.8 17.5 193 73-306 3-222 (224)
21 1ji0_A ABC transporter; ATP bi 100.0 3.5E-41 1.2E-45 312.8 15.6 197 72-312 4-228 (240)
22 2yz2_A Putative ABC transporte 100.0 5.9E-41 2E-45 315.9 13.2 198 74-316 2-231 (266)
23 2ff7_A Alpha-hemolysin translo 100.0 1.1E-40 3.7E-45 311.0 13.0 203 74-315 7-235 (247)
24 3b5x_A Lipid A export ATP-bind 100.0 6.6E-40 2.3E-44 339.3 18.3 234 43-313 304-568 (582)
25 2ihy_A ABC transporter, ATP-bi 100.0 3.1E-40 1E-44 313.3 14.4 203 71-312 18-252 (279)
26 1mv5_A LMRA, multidrug resista 100.0 3.4E-40 1.2E-44 306.6 13.0 200 74-312 1-226 (243)
27 2d2e_A SUFC protein; ABC-ATPas 100.0 1.2E-39 4.1E-44 304.2 16.4 195 73-308 2-229 (250)
28 4f4c_A Multidrug resistance pr 100.0 1.3E-40 4.5E-45 372.0 11.6 237 43-314 1037-1306(1321)
29 4a82_A Cystic fibrosis transme 100.0 3.6E-40 1.2E-44 341.2 12.1 234 43-314 300-566 (578)
30 2ixe_A Antigen peptide transpo 100.0 3E-40 1E-44 312.0 9.6 198 72-313 14-246 (271)
31 3gd7_A Fusion complex of cysti 100.0 2E-40 6.8E-45 328.1 8.7 202 72-324 17-254 (390)
32 2yl4_A ATP-binding cassette SU 100.0 1.5E-39 5.1E-44 337.5 15.1 241 44-318 302-576 (595)
33 3b60_A Lipid A export ATP-bind 100.0 8.1E-40 2.8E-44 338.7 13.0 233 43-313 304-568 (582)
34 3qf4_A ABC transporter, ATP-bi 100.0 5.2E-40 1.8E-44 340.6 11.3 232 44-313 303-567 (587)
35 2zu0_C Probable ATP-dependent 100.0 1.1E-38 3.9E-43 300.5 18.5 205 71-311 17-253 (267)
36 3qf4_B Uncharacterized ABC tra 100.0 4.6E-40 1.6E-44 341.6 9.5 231 43-313 316-579 (598)
37 4f4c_A Multidrug resistance pr 100.0 1.1E-39 3.9E-44 364.4 12.5 233 44-313 376-642 (1321)
38 2nq2_C Hypothetical ABC transp 100.0 7.7E-38 2.6E-42 292.8 19.0 184 73-312 3-217 (253)
39 2ghi_A Transport protein; mult 100.0 9.3E-39 3.2E-43 300.0 10.9 203 73-313 16-243 (260)
40 2qi9_C Vitamin B12 import ATP- 100.0 1.7E-38 5.8E-43 296.7 11.4 185 74-312 4-222 (249)
41 2pjz_A Hypothetical protein ST 100.0 1.2E-37 4.1E-42 293.2 13.6 187 74-312 1-215 (263)
42 1sgw_A Putative ABC transporte 100.0 9.4E-38 3.2E-42 285.6 11.3 175 72-301 8-210 (214)
43 2pze_A Cystic fibrosis transme 100.0 1E-36 3.5E-41 280.9 15.1 188 73-313 5-219 (229)
44 3g5u_A MCG1178, multidrug resi 100.0 2.9E-37 1E-41 344.3 11.0 234 43-313 347-614 (1284)
45 2cbz_A Multidrug resistance-as 100.0 1.3E-36 4.6E-41 281.6 13.2 185 73-313 2-218 (237)
46 3g5u_A MCG1178, multidrug resi 100.0 4.1E-36 1.4E-40 335.0 9.2 232 48-314 995-1260(1284)
47 2bbs_A Cystic fibrosis transme 100.0 9.3E-35 3.2E-39 277.1 12.9 183 72-312 38-247 (290)
48 3bk7_A ABC transporter ATP-bin 100.0 7.3E-31 2.5E-35 272.9 13.7 178 72-312 355-563 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 7.1E-31 2.4E-35 269.6 12.0 178 72-312 285-493 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 5.2E-31 1.8E-35 270.6 9.8 176 72-308 267-473 (538)
51 3j16_B RLI1P; ribosome recycli 100.0 2.6E-29 8.8E-34 261.2 11.9 174 78-312 350-559 (608)
52 2iw3_A Elongation factor 3A; a 100.0 2.1E-29 7.2E-34 272.1 11.5 209 72-306 669-981 (986)
53 3bk7_A ABC transporter ATP-bin 100.0 3.4E-30 1.2E-34 267.9 3.3 179 73-299 82-304 (607)
54 1yqt_A RNAse L inhibitor; ATP- 100.0 4.1E-30 1.4E-34 263.9 2.2 177 75-299 21-234 (538)
55 3ux8_A Excinuclease ABC, A sub 100.0 8.6E-29 2.9E-33 259.9 10.0 190 96-315 34-301 (670)
56 3ux8_A Excinuclease ABC, A sub 99.9 3.2E-27 1.1E-31 247.9 15.2 96 211-324 521-651 (670)
57 3j16_B RLI1P; ribosome recycli 99.9 5.3E-28 1.8E-32 251.3 4.5 175 79-300 82-298 (608)
58 2iw3_A Elongation factor 3A; a 99.9 1.7E-26 5.8E-31 249.5 16.2 175 74-312 435-635 (986)
59 3ozx_A RNAse L inhibitor; ATP 99.9 1.3E-27 4.5E-32 245.3 2.9 174 78-300 3-214 (538)
60 3pih_A Uvrabc system protein A 99.9 4E-25 1.4E-29 238.1 14.7 97 210-324 782-913 (916)
61 2vf7_A UVRA2, excinuclease ABC 99.9 1.1E-24 3.7E-29 233.0 17.0 95 211-324 708-838 (842)
62 2npi_A Protein CLP1; CLP1-PCF1 99.9 2.9E-28 9.8E-33 245.9 -14.2 177 72-310 116-336 (460)
63 2r6f_A Excinuclease ABC subuni 99.9 3E-23 1E-27 223.1 17.9 95 212-324 824-953 (972)
64 2ygr_A Uvrabc system protein A 99.9 4.3E-23 1.5E-27 222.6 13.6 94 212-323 842-970 (993)
65 4aby_A DNA repair protein RECN 99.9 1.7E-22 5.9E-27 199.1 10.3 54 250-304 296-380 (415)
66 2v9p_A Replication protein E1; 99.9 1.6E-25 5.6E-30 214.6 -14.2 184 45-310 66-264 (305)
67 1e69_A Chromosome segregation 99.8 2.9E-19 1E-23 171.6 11.2 59 243-301 213-301 (322)
68 4gp7_A Metallophosphoesterase; 99.8 7.1E-20 2.4E-24 160.2 5.0 30 98-127 1-30 (171)
69 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 1.1E-18 3.6E-23 171.0 10.0 59 244-303 274-364 (365)
70 2dpy_A FLII, flagellum-specifi 99.8 1.8E-21 6E-26 195.2 -11.3 183 73-314 130-346 (438)
71 3b9q_A Chloroplast SRP recepto 99.7 5.8E-20 2E-24 175.8 -3.8 158 97-302 91-285 (302)
72 1tq4_A IIGP1, interferon-induc 99.7 4.3E-20 1.5E-24 183.8 -5.6 138 96-292 39-247 (413)
73 3b85_A Phosphate starvation-in 99.7 4.7E-20 1.6E-24 167.4 -5.2 34 104-143 20-53 (208)
74 1z6g_A Guanylate kinase; struc 99.7 4.9E-20 1.7E-24 167.6 -6.5 45 96-149 13-57 (218)
75 1znw_A Guanylate kinase, GMP k 99.7 3.8E-19 1.3E-23 159.8 -2.0 34 96-131 12-45 (207)
76 3sop_A Neuronal-specific septi 99.7 1.5E-19 5.3E-24 170.1 -5.2 127 108-282 4-148 (270)
77 2obl_A ESCN; ATPase, hydrolase 99.7 5.6E-20 1.9E-24 179.1 -11.3 189 73-315 44-258 (347)
78 2og2_A Putative signal recogni 99.7 8.1E-19 2.8E-23 171.7 -3.2 157 98-301 149-341 (359)
79 2vf7_A UVRA2, excinuclease ABC 99.7 4.7E-16 1.6E-20 166.5 16.2 88 210-315 357-478 (842)
80 3aez_A Pantothenate kinase; tr 99.7 2.5E-20 8.5E-25 179.1 -16.3 172 72-313 41-256 (312)
81 1tf7_A KAIC; homohexamer, hexa 99.7 7.2E-20 2.5E-24 187.0 -14.6 64 74-148 12-78 (525)
82 1ye8_A Protein THEP1, hypothet 99.7 1.4E-17 4.6E-22 147.4 1.3 49 243-291 70-152 (178)
83 2o5v_A DNA replication and rep 99.6 4.4E-15 1.5E-19 145.2 14.4 62 245-310 260-354 (359)
84 2pt7_A CAG-ALFA; ATPase, prote 99.6 1.4E-17 4.7E-22 161.1 -4.1 48 96-148 161-208 (330)
85 1cr0_A DNA primase/helicase; R 99.6 1.5E-15 5E-20 143.3 4.3 46 96-146 25-71 (296)
86 3pih_A Uvrabc system protein A 99.5 6E-15 2.1E-19 159.2 5.6 92 213-321 444-569 (916)
87 2o8b_B DNA mismatch repair pro 99.5 1.8E-15 6.2E-20 165.2 1.4 54 72-131 748-813 (1022)
88 3qkt_A DNA double-strand break 99.5 2.1E-13 7.1E-18 131.7 14.6 55 242-297 241-327 (339)
89 1tf7_A KAIC; homohexamer, hexa 99.5 1.5E-14 5.3E-19 147.6 6.8 126 100-300 275-444 (525)
90 1rj9_A FTSY, signal recognitio 99.5 7E-16 2.4E-20 147.6 -3.8 41 105-150 101-141 (304)
91 1lw7_A Transcriptional regulat 99.5 3.9E-16 1.3E-20 152.2 -7.2 176 96-311 158-354 (365)
92 2qnr_A Septin-2, protein NEDD5 99.5 3.3E-16 1.1E-20 149.4 -7.9 144 78-283 2-166 (301)
93 2eyu_A Twitching motility prot 99.5 1.1E-14 3.6E-19 136.4 1.9 48 96-150 17-65 (261)
94 2jeo_A Uridine-cytidine kinase 99.5 3.1E-15 1.1E-19 137.7 -1.9 36 96-131 15-50 (245)
95 4a74_A DNA repair and recombin 99.4 6.6E-14 2.3E-18 125.6 6.6 164 102-300 21-201 (231)
96 3thx_A DNA mismatch repair pro 99.4 7E-14 2.4E-18 151.3 7.5 31 96-126 652-682 (934)
97 1pui_A ENGB, probable GTP-bind 99.4 2E-14 6.9E-19 127.3 1.8 62 74-144 3-64 (210)
98 2r6f_A Excinuclease ABC subuni 99.4 2.2E-13 7.5E-18 146.8 8.3 90 208-315 480-603 (972)
99 4ad8_A DNA repair protein RECN 99.4 1.8E-13 6.1E-18 139.4 6.9 56 244-300 391-474 (517)
100 2ehv_A Hypothetical protein PH 99.4 5.7E-14 2E-18 127.5 2.9 60 74-148 6-69 (251)
101 1w1w_A Structural maintenance 99.4 3.6E-12 1.2E-16 126.7 12.8 52 245-297 329-410 (430)
102 2rcn_A Probable GTPase ENGC; Y 99.3 3.5E-13 1.2E-17 131.6 4.6 122 96-264 206-328 (358)
103 3asz_A Uridine kinase; cytidin 99.3 1.7E-14 5.9E-19 128.7 -4.8 29 103-131 3-31 (211)
104 3thx_B DNA mismatch repair pro 99.3 5.6E-13 1.9E-17 144.0 5.0 36 96-131 663-698 (918)
105 3szr_A Interferon-induced GTP- 99.3 8.2E-15 2.8E-19 152.4 -9.1 195 73-309 9-234 (608)
106 2w0m_A SSO2452; RECA, SSPF, un 99.3 2.5E-12 8.6E-17 114.9 7.6 47 96-147 12-59 (235)
107 1nij_A Hypothetical protein YJ 99.3 2.2E-14 7.4E-19 137.6 -6.6 153 107-282 5-187 (318)
108 2yhs_A FTSY, cell division pro 99.3 5.3E-13 1.8E-17 135.1 3.1 49 97-150 284-332 (503)
109 2i3b_A HCR-ntpase, human cance 99.3 2.2E-14 7.6E-19 128.1 -6.4 54 106-172 1-54 (189)
110 2ygr_A Uvrabc system protein A 99.3 2.2E-12 7.5E-17 139.5 7.8 89 209-315 498-620 (993)
111 2f1r_A Molybdopterin-guanine d 99.3 1.9E-14 6.5E-19 126.6 -7.3 39 107-150 3-44 (171)
112 2yv5_A YJEQ protein; hydrolase 99.3 1E-13 3.6E-18 132.1 -2.8 131 101-262 160-300 (302)
113 3e70_C DPA, signal recognition 99.3 1.9E-13 6.5E-18 132.0 -3.1 43 103-150 126-168 (328)
114 1u0l_A Probable GTPase ENGC; p 99.2 1.6E-13 5.4E-18 130.6 -4.1 122 101-252 164-294 (301)
115 1htw_A HI0065; nucleotide-bind 99.2 1.1E-12 3.7E-17 113.9 -1.0 61 78-150 11-71 (158)
116 1zp6_A Hypothetical protein AT 99.2 2.3E-13 7.9E-18 119.2 -5.5 41 102-149 5-45 (191)
117 2qag_C Septin-7; cell cycle, c 99.2 3.7E-13 1.3E-17 134.1 -5.1 47 73-131 10-56 (418)
118 1ewq_A DNA mismatch repair pro 99.2 7.4E-12 2.5E-16 133.1 4.1 33 96-131 569-601 (765)
119 3euj_A Chromosome partition pr 99.1 1.6E-11 5.6E-16 124.1 3.9 49 96-150 20-68 (483)
120 1wb9_A DNA mismatch repair pro 99.1 1.1E-11 3.7E-16 132.5 2.7 35 96-131 598-632 (800)
121 1pzn_A RAD51, DNA repair and r 99.1 2.6E-11 8.9E-16 117.8 5.2 178 96-311 120-314 (349)
122 1nlf_A Regulatory protein REPA 99.1 8.9E-11 3E-15 109.7 8.1 30 102-131 26-55 (279)
123 1p9r_A General secretion pathw 99.1 9.1E-13 3.1E-17 131.2 -6.3 42 104-150 165-206 (418)
124 1f2t_B RAD50 ABC-ATPase; DNA d 99.1 4.7E-11 1.6E-15 102.6 5.2 54 243-297 51-136 (148)
125 3jvv_A Twitching mobility prot 99.1 1.4E-11 4.8E-16 120.2 1.4 60 78-146 92-159 (356)
126 2qag_B Septin-6, protein NEDD5 99.1 2.5E-12 8.5E-17 128.2 -4.9 49 74-130 16-66 (427)
127 1udx_A The GTP-binding protein 99.0 8.1E-11 2.8E-15 117.1 4.4 35 96-130 147-181 (416)
128 2gza_A Type IV secretion syste 99.0 7.4E-12 2.5E-16 122.2 -3.5 46 97-147 166-211 (361)
129 1n0w_A DNA repair protein RAD5 99.0 5.2E-10 1.8E-14 100.9 8.9 42 102-148 20-68 (243)
130 2qm8_A GTPase/ATPase; G protei 99.0 1.9E-12 6.6E-17 125.2 -7.9 66 74-150 29-94 (337)
131 2cvh_A DNA repair and recombin 99.0 4.6E-10 1.6E-14 99.8 8.1 41 99-146 12-53 (220)
132 3kta_B Chromosome segregation 99.0 2.9E-10 1E-14 100.1 6.3 63 232-294 47-138 (173)
133 2ewv_A Twitching motility prot 99.0 4.9E-11 1.7E-15 116.9 1.2 42 103-149 133-175 (372)
134 2bdt_A BH3686; alpha-beta prot 99.0 1.9E-10 6.5E-15 100.7 3.4 36 106-149 2-37 (189)
135 1t9h_A YLOQ, probable GTPase E 99.0 2.3E-11 7.7E-16 116.5 -3.4 109 101-224 168-287 (307)
136 2x8a_A Nuclear valosin-contain 98.9 8.9E-13 3.1E-17 123.9 -14.0 46 96-150 36-81 (274)
137 3tr0_A Guanylate kinase, GMP k 98.9 1.2E-09 4.1E-14 96.2 5.9 42 100-150 1-42 (205)
138 3lda_A DNA repair protein RAD5 98.9 4.6E-09 1.6E-13 103.9 10.3 42 102-148 174-222 (400)
139 1in4_A RUVB, holliday junction 98.9 4.7E-13 1.6E-17 128.8 -18.1 68 74-148 18-92 (334)
140 1s96_A Guanylate kinase, GMP k 98.9 6.9E-10 2.3E-14 101.0 3.0 47 97-148 7-55 (219)
141 3lnc_A Guanylate kinase, GMP k 98.9 5.3E-10 1.8E-14 101.3 2.0 36 96-131 17-53 (231)
142 1sq5_A Pantothenate kinase; P- 98.8 3.5E-11 1.2E-15 114.7 -6.9 66 73-149 36-123 (308)
143 1odf_A YGR205W, hypothetical 3 98.8 1.1E-10 3.9E-15 110.6 -4.1 28 104-131 29-56 (290)
144 2bbw_A Adenylate kinase 4, AK4 98.8 4.8E-11 1.6E-15 109.4 -7.0 39 105-148 26-67 (246)
145 1qhl_A Protein (cell division 98.8 1.9E-10 6.4E-15 105.6 -4.1 58 74-150 9-66 (227)
146 3nwj_A ATSK2; P loop, shikimat 98.7 4.6E-10 1.6E-14 104.3 -2.9 54 73-131 16-73 (250)
147 3c8u_A Fructokinase; YP_612366 98.7 3.9E-09 1.3E-13 94.2 1.8 42 103-149 19-63 (208)
148 1vma_A Cell division protein F 98.7 7.1E-09 2.4E-13 99.0 3.7 47 99-150 97-143 (306)
149 3kta_A Chromosome segregation 98.6 2.8E-08 9.4E-13 86.2 5.5 34 97-131 18-51 (182)
150 2oap_1 GSPE-2, type II secreti 98.6 5.7E-09 2E-13 106.3 -0.1 48 96-148 250-297 (511)
151 2ius_A DNA translocase FTSK; n 98.6 6.8E-09 2.3E-13 105.7 -0.1 48 98-150 159-208 (512)
152 1lvg_A Guanylate kinase, GMP k 98.5 1.6E-08 5.4E-13 89.9 1.7 28 104-131 2-29 (198)
153 2j41_A Guanylate kinase; GMP, 98.5 4.4E-08 1.5E-12 86.1 3.9 31 101-131 1-31 (207)
154 1ls1_A Signal recognition part 98.5 2E-07 6.7E-12 88.3 7.1 61 75-150 77-137 (295)
155 3vaa_A Shikimate kinase, SK; s 98.4 6.9E-08 2.4E-12 85.4 3.2 46 83-131 5-50 (199)
156 3uie_A Adenylyl-sulfate kinase 98.4 8.9E-09 3E-13 91.2 -2.9 61 78-150 3-65 (200)
157 3a00_A Guanylate kinase, GMP k 98.4 9.6E-08 3.3E-12 83.6 2.7 26 106-131 1-26 (186)
158 1kgd_A CASK, peripheral plasma 98.4 1.2E-07 4.2E-12 82.6 3.0 27 105-131 4-30 (180)
159 4e22_A Cytidylate kinase; P-lo 98.4 4.8E-08 1.7E-12 90.1 0.0 42 104-150 25-77 (252)
160 1sxj_E Activator 1 40 kDa subu 98.4 2.4E-07 8.2E-12 88.3 4.8 38 108-150 38-76 (354)
161 3auy_A DNA double-strand break 98.3 7.8E-07 2.7E-11 86.5 8.1 52 245-297 276-359 (371)
162 4eun_A Thermoresistant glucoki 98.3 1.8E-07 6E-12 82.8 2.8 42 99-149 22-63 (200)
163 2r6a_A DNAB helicase, replicat 98.3 1.3E-06 4.4E-11 87.3 7.8 46 96-146 193-239 (454)
164 1rz3_A Hypothetical protein rb 98.3 2.1E-07 7.2E-12 82.5 1.7 42 103-149 19-60 (201)
165 3ec2_A DNA replication protein 98.2 1.6E-07 5.5E-12 81.3 0.2 36 100-140 32-67 (180)
166 1zu4_A FTSY; GTPase, signal re 98.2 2.1E-07 7.2E-12 89.3 0.6 49 97-150 96-144 (320)
167 3hr8_A Protein RECA; alpha and 98.2 1.2E-07 4.2E-12 92.3 -1.4 39 103-146 58-97 (356)
168 2kjq_A DNAA-related protein; s 98.2 4.3E-07 1.5E-11 77.4 2.0 38 105-148 35-74 (149)
169 1oix_A RAS-related protein RAB 98.2 1.1E-06 3.7E-11 76.8 4.6 42 108-149 31-78 (191)
170 3tau_A Guanylate kinase, GMP k 98.1 1.1E-06 3.7E-11 78.4 3.9 28 104-131 6-33 (208)
171 2vp4_A Deoxynucleoside kinase; 98.1 6.4E-07 2.2E-11 81.1 2.4 42 99-149 13-54 (230)
172 3cr8_A Sulfate adenylyltranfer 98.1 8.9E-07 3E-11 90.9 2.1 43 102-149 365-409 (552)
173 1ixz_A ATP-dependent metallopr 98.1 6.4E-07 2.2E-11 81.8 0.5 45 96-149 41-85 (254)
174 1svm_A Large T antigen; AAA+ f 98.0 7.1E-07 2.4E-11 87.5 0.8 36 96-131 159-194 (377)
175 1ni3_A YCHF GTPase, YCHF GTP-b 98.0 2.5E-06 8.6E-11 84.1 4.3 46 102-147 16-68 (392)
176 2f9l_A RAB11B, member RAS onco 98.0 2.9E-06 9.9E-11 74.2 4.2 42 108-149 7-54 (199)
177 3tqc_A Pantothenate kinase; bi 98.0 4.7E-07 1.6E-11 87.0 -1.1 48 96-146 76-129 (321)
178 1iy2_A ATP-dependent metallopr 98.0 8.2E-07 2.8E-11 82.5 0.5 45 96-149 65-109 (278)
179 2qtf_A Protein HFLX, GTP-bindi 98.0 1.4E-05 4.6E-10 77.9 9.0 42 108-149 181-228 (364)
180 3ney_A 55 kDa erythrocyte memb 98.0 2.5E-06 8.6E-11 76.4 3.3 32 100-131 13-44 (197)
181 1knq_A Gluconate kinase; ALFA/ 98.0 2.8E-06 9.4E-11 72.9 2.8 37 104-149 6-42 (175)
182 1kag_A SKI, shikimate kinase I 98.0 3.3E-06 1.1E-10 72.1 3.1 27 105-131 3-29 (173)
183 3ice_A Transcription terminati 97.9 1.1E-06 3.6E-11 86.6 -0.8 54 73-131 132-199 (422)
184 1f2t_A RAD50 ABC-ATPase; DNA d 97.9 1.2E-05 4.2E-10 68.2 5.5 34 96-130 14-47 (149)
185 1cke_A CK, MSSA, protein (cyti 97.9 2.4E-06 8.1E-11 76.2 1.0 37 106-144 5-41 (227)
186 2pez_A Bifunctional 3'-phospho 97.9 4.7E-06 1.6E-10 71.9 2.7 40 104-149 3-44 (179)
187 2px0_A Flagellar biosynthesis 97.9 3.9E-06 1.3E-10 79.5 2.2 40 104-148 103-143 (296)
188 2qt1_A Nicotinamide riboside k 97.8 5E-06 1.7E-10 73.4 2.4 31 101-131 16-46 (207)
189 2p67_A LAO/AO transport system 97.8 1.6E-06 5.6E-11 83.4 -0.8 64 75-149 31-94 (341)
190 2www_A Methylmalonic aciduria 97.8 5.4E-06 1.8E-10 80.2 2.5 42 104-150 72-113 (349)
191 2dy1_A Elongation factor G; tr 97.8 5E-06 1.7E-10 87.1 1.4 46 100-149 3-48 (665)
192 4eaq_A DTMP kinase, thymidylat 97.8 1.1E-05 3.9E-10 73.2 3.6 43 96-144 13-58 (229)
193 1m7g_A Adenylylsulfate kinase; 97.7 1E-05 3.5E-10 71.9 2.5 44 101-149 20-65 (211)
194 3qks_A DNA double-strand break 97.7 4.3E-05 1.5E-09 68.1 5.5 34 96-130 14-47 (203)
195 3k1j_A LON protease, ATP-depen 97.6 6.6E-06 2.3E-10 85.1 -0.1 49 96-149 50-99 (604)
196 3m6a_A ATP-dependent protease 97.6 7.7E-06 2.6E-10 83.7 0.3 46 96-147 99-144 (543)
197 1m2o_B GTP-binding protein SAR 97.6 4.6E-05 1.6E-09 66.1 4.7 32 96-128 14-45 (190)
198 2ffh_A Protein (FFH); SRP54, s 97.6 1.7E-05 5.8E-10 78.9 2.1 59 77-150 79-137 (425)
199 2gj8_A MNME, tRNA modification 97.6 5.1E-05 1.7E-09 64.9 4.7 27 104-130 2-28 (172)
200 2dr3_A UPF0273 protein PH0284; 97.6 4.3E-05 1.5E-09 68.4 4.1 42 100-146 17-59 (247)
201 1jjv_A Dephospho-COA kinase; P 97.5 3.7E-05 1.3E-09 67.6 3.3 21 108-128 4-24 (206)
202 1y63_A LMAJ004144AAA protein; 97.5 3.2E-05 1.1E-09 67.2 2.8 31 99-129 3-33 (184)
203 3t34_A Dynamin-related protein 97.5 2.3E-05 7.9E-10 75.6 2.0 41 96-144 27-69 (360)
204 2qor_A Guanylate kinase; phosp 97.5 3.6E-05 1.2E-09 68.0 3.0 30 102-131 8-37 (204)
205 2yvu_A Probable adenylyl-sulfa 97.5 4.1E-05 1.4E-09 66.3 3.0 39 103-146 10-49 (186)
206 1f6b_A SAR1; gtpases, N-termin 97.5 1.2E-05 4.2E-10 70.4 -0.4 32 96-128 16-47 (198)
207 1j8m_F SRP54, signal recogniti 97.5 1.3E-05 4.6E-10 75.8 -0.5 60 77-150 77-137 (297)
208 3auy_A DNA double-strand break 97.4 0.00013 4.6E-09 70.6 6.1 32 96-128 16-47 (371)
209 2wjg_A FEOB, ferrous iron tran 97.4 9.1E-05 3.1E-09 63.3 4.2 22 108-129 9-30 (188)
210 2if2_A Dephospho-COA kinase; a 97.4 5.8E-05 2E-09 66.1 3.0 21 108-128 3-23 (204)
211 2wji_A Ferrous iron transport 97.4 0.00014 4.7E-09 61.4 4.9 23 108-130 5-27 (165)
212 2dhr_A FTSH; AAA+ protein, hex 97.4 3.3E-05 1.1E-09 78.3 1.1 45 96-149 56-100 (499)
213 1mky_A Probable GTP-binding pr 97.4 0.00011 3.9E-09 72.8 4.8 43 107-149 181-230 (439)
214 1np6_A Molybdopterin-guanine d 97.3 0.00014 4.7E-09 63.6 3.5 40 107-148 7-46 (174)
215 3t61_A Gluconokinase; PSI-biol 97.3 0.0001 3.4E-09 64.7 2.5 26 106-131 18-43 (202)
216 2ohf_A Protein OLA1, GTP-bindi 97.2 0.00014 4.8E-09 71.6 3.2 46 102-147 18-69 (396)
217 3cm0_A Adenylate kinase; ATP-b 97.2 0.00014 4.9E-09 62.4 2.9 27 104-130 2-28 (186)
218 1ega_A Protein (GTP-binding pr 97.2 0.00011 3.6E-09 69.5 1.9 26 105-130 7-32 (301)
219 2zej_A Dardarin, leucine-rich 97.2 0.00018 6E-09 61.9 3.1 24 108-131 4-27 (184)
220 3kb2_A SPBC2 prophage-derived 97.2 0.00017 6E-09 60.7 3.0 24 108-131 3-26 (173)
221 4a1f_A DNAB helicase, replicat 97.1 0.0004 1.4E-08 67.0 5.5 36 96-131 36-71 (338)
222 1qhx_A CPT, protein (chloramph 97.1 0.00026 8.7E-09 60.4 3.7 26 106-131 3-28 (178)
223 2qag_A Septin-2, protein NEDD5 97.1 2.8E-05 9.6E-10 75.5 -2.9 47 73-131 16-62 (361)
224 1q3t_A Cytidylate kinase; nucl 97.1 0.00026 9E-09 63.8 3.5 29 102-130 12-40 (236)
225 2p5t_B PEZT; postsegregational 97.1 0.00024 8.1E-09 65.0 2.9 40 103-149 29-68 (253)
226 1lv7_A FTSH; alpha/beta domain 97.0 0.00019 6.6E-09 65.2 2.2 31 99-131 40-70 (257)
227 3ihw_A Centg3; RAS, centaurin, 97.0 0.00087 3E-08 57.7 6.2 41 108-148 22-66 (184)
228 1gtv_A TMK, thymidylate kinase 97.0 0.00013 4.6E-09 64.0 1.0 24 108-131 2-25 (214)
229 1kht_A Adenylate kinase; phosp 97.0 0.00037 1.3E-08 59.7 3.5 26 106-131 3-28 (192)
230 3lw7_A Adenylate kinase relate 97.0 0.00033 1.1E-08 58.6 3.1 19 108-126 3-21 (179)
231 2ga8_A Hypothetical 39.9 kDa p 97.0 6.7E-05 2.3E-09 72.9 -1.4 36 96-131 12-49 (359)
232 1sxj_C Activator 1 40 kDa subu 97.0 3.2E-05 1.1E-09 73.7 -4.1 36 96-131 34-71 (340)
233 2jaq_A Deoxyguanosine kinase; 96.9 0.00037 1.3E-08 60.3 3.0 24 108-131 2-25 (205)
234 3lxx_A GTPase IMAP family memb 96.9 0.00051 1.7E-08 61.8 3.9 24 108-131 31-54 (239)
235 3r20_A Cytidylate kinase; stru 96.9 0.00037 1.3E-08 63.8 2.9 25 106-130 9-33 (233)
236 2rhm_A Putative kinase; P-loop 96.9 0.00045 1.5E-08 59.4 3.1 28 104-131 3-30 (193)
237 2zr9_A Protein RECA, recombina 96.9 0.00046 1.6E-08 66.7 3.4 30 102-131 57-86 (349)
238 1vht_A Dephospho-COA kinase; s 96.9 0.00053 1.8E-08 60.7 3.5 24 105-128 3-26 (218)
239 3trf_A Shikimate kinase, SK; a 96.9 0.00055 1.9E-08 58.7 3.4 26 106-131 5-30 (185)
240 2ze6_A Isopentenyl transferase 96.9 0.00048 1.7E-08 63.2 3.2 24 108-131 3-26 (253)
241 1uf9_A TT1252 protein; P-loop, 96.8 0.00054 1.9E-08 59.4 3.3 24 106-129 8-31 (203)
242 1via_A Shikimate kinase; struc 96.8 0.0004 1.4E-08 59.3 2.3 24 108-131 6-29 (175)
243 2v54_A DTMP kinase, thymidylat 96.8 0.00067 2.3E-08 58.9 3.8 26 105-130 3-28 (204)
244 1ly1_A Polynucleotide kinase; 96.8 0.00061 2.1E-08 57.8 3.2 22 107-128 3-24 (181)
245 3kl4_A SRP54, signal recogniti 96.8 0.0004 1.4E-08 69.2 2.3 41 105-150 96-136 (433)
246 1ex7_A Guanylate kinase; subst 96.8 0.00059 2E-08 60.3 3.0 23 109-131 4-26 (186)
247 3iij_A Coilin-interacting nucl 96.8 0.00061 2.1E-08 58.4 3.0 28 104-131 9-36 (180)
248 1ypw_A Transitional endoplasmi 96.8 0.00039 1.3E-08 74.3 2.0 31 101-131 233-263 (806)
249 2plr_A DTMP kinase, probable t 96.7 0.00077 2.6E-08 58.7 3.5 27 105-131 3-29 (213)
250 4ag6_A VIRB4 ATPase, type IV s 96.7 0.00069 2.3E-08 65.8 3.3 36 105-145 34-69 (392)
251 2wwf_A Thymidilate kinase, put 96.7 0.0008 2.7E-08 58.8 3.4 28 104-131 8-35 (212)
252 2c95_A Adenylate kinase 1; tra 96.7 0.00083 2.8E-08 57.9 3.3 27 105-131 8-34 (196)
253 3ake_A Cytidylate kinase; CMP 96.7 0.00071 2.4E-08 58.9 2.8 24 108-131 4-27 (208)
254 1jal_A YCHF protein; nucleotid 96.7 0.0012 4.3E-08 64.1 4.7 41 106-146 2-48 (363)
255 1fzq_A ADP-ribosylation factor 96.7 0.001 3.4E-08 57.0 3.6 23 107-129 17-39 (181)
256 1nn5_A Similar to deoxythymidy 96.7 0.00087 3E-08 58.6 3.3 29 103-131 6-34 (215)
257 1tev_A UMP-CMP kinase; ploop, 96.7 0.00093 3.2E-08 57.2 3.3 26 106-131 3-28 (196)
258 1nks_A Adenylate kinase; therm 96.7 0.00084 2.9E-08 57.4 3.0 24 108-131 3-26 (194)
259 3cf0_A Transitional endoplasmi 96.6 0.00073 2.5E-08 63.3 2.5 30 102-131 45-74 (301)
260 3k53_A Ferrous iron transport 96.6 0.00093 3.2E-08 61.5 3.1 24 108-131 5-28 (271)
261 1xjc_A MOBB protein homolog; s 96.6 0.00096 3.3E-08 58.1 2.9 25 107-131 5-29 (169)
262 2ew1_A RAS-related protein RAB 96.6 0.0028 9.6E-08 55.5 6.1 23 108-130 28-50 (201)
263 2vli_A Antibiotic resistance p 96.6 0.00082 2.8E-08 57.3 2.4 27 105-131 4-30 (183)
264 1gvn_B Zeta; postsegregational 96.6 0.00089 3E-08 62.7 2.8 35 105-146 32-66 (287)
265 2z0h_A DTMP kinase, thymidylat 96.6 0.0011 3.7E-08 57.1 3.2 24 108-131 2-25 (197)
266 2ged_A SR-beta, signal recogni 96.6 0.0011 3.9E-08 56.6 3.3 25 107-131 49-73 (193)
267 3cbq_A GTP-binding protein REM 96.6 0.0016 5.5E-08 56.6 4.3 23 108-130 25-47 (195)
268 1z2a_A RAS-related protein RAB 96.6 0.0019 6.6E-08 53.3 4.5 23 108-130 7-29 (168)
269 2bcg_Y Protein YP2, GTP-bindin 96.6 0.0034 1.2E-07 54.4 6.2 23 108-130 10-32 (206)
270 2dyk_A GTP-binding protein; GT 96.5 0.0014 4.8E-08 53.9 3.3 23 108-130 3-25 (161)
271 2bwj_A Adenylate kinase 5; pho 96.5 0.0014 4.6E-08 56.6 3.2 29 103-131 9-37 (199)
272 1z0j_A RAB-22, RAS-related pro 96.5 0.0026 8.9E-08 52.7 4.8 23 108-130 8-30 (170)
273 1c1y_A RAS-related protein RAP 96.5 0.003 1E-07 52.1 5.1 23 108-130 5-27 (167)
274 1ek0_A Protein (GTP-binding pr 96.5 0.0026 8.8E-08 52.6 4.8 23 108-130 5-27 (170)
275 2ce2_X GTPase HRAS; signaling 96.5 0.0014 4.6E-08 53.8 3.0 23 108-130 5-27 (166)
276 1kao_A RAP2A; GTP-binding prot 96.5 0.0015 5.1E-08 53.7 3.3 23 108-130 5-27 (167)
277 4fcw_A Chaperone protein CLPB; 96.5 0.0013 4.6E-08 60.9 3.3 31 107-142 48-78 (311)
278 1ko7_A HPR kinase/phosphatase; 96.5 0.0026 9E-08 60.7 5.3 45 96-146 135-183 (314)
279 2nzj_A GTP-binding protein REM 96.5 0.0015 5.1E-08 54.5 3.2 23 108-130 6-28 (175)
280 2erx_A GTP-binding protein DI- 96.5 0.0016 5.4E-08 54.0 3.3 22 108-129 5-26 (172)
281 3fb4_A Adenylate kinase; psych 96.5 0.0014 4.9E-08 57.6 3.2 24 108-131 2-25 (216)
282 2lkc_A Translation initiation 96.4 0.0019 6.5E-08 54.1 3.7 26 105-130 7-32 (178)
283 1u8z_A RAS-related protein RAL 96.4 0.0016 5.5E-08 53.6 3.2 23 108-130 6-28 (168)
284 3q72_A GTP-binding protein RAD 96.4 0.0013 4.3E-08 54.6 2.5 24 108-131 4-27 (166)
285 1aky_A Adenylate kinase; ATP:A 96.4 0.0017 5.9E-08 57.5 3.6 27 105-131 3-29 (220)
286 2pbr_A DTMP kinase, thymidylat 96.4 0.0016 5.3E-08 55.9 3.2 24 108-131 2-25 (195)
287 1zuh_A Shikimate kinase; alpha 96.4 0.0017 5.8E-08 54.9 3.3 25 107-131 8-32 (168)
288 1ky3_A GTP-binding protein YPT 96.4 0.0017 5.7E-08 54.5 3.3 23 108-130 10-32 (182)
289 1z08_A RAS-related protein RAB 96.4 0.0017 5.8E-08 53.9 3.3 23 108-130 8-30 (170)
290 3q85_A GTP-binding protein REM 96.4 0.0017 5.7E-08 54.0 3.2 24 108-131 4-27 (169)
291 1e6c_A Shikimate kinase; phosp 96.4 0.0014 4.7E-08 55.4 2.7 25 107-131 3-27 (173)
292 1zd8_A GTP:AMP phosphotransfer 96.4 0.0016 5.6E-08 58.0 3.3 28 104-131 5-32 (227)
293 2cdn_A Adenylate kinase; phosp 96.4 0.0019 6.6E-08 56.3 3.6 27 105-131 19-45 (201)
294 1g16_A RAS-related protein SEC 96.4 0.0016 5.6E-08 53.9 3.0 23 108-130 5-27 (170)
295 2pt5_A Shikimate kinase, SK; a 96.4 0.0018 6.1E-08 54.5 3.2 24 108-131 2-25 (168)
296 1wms_A RAB-9, RAB9, RAS-relate 96.4 0.0018 6.3E-08 54.2 3.3 23 108-130 9-31 (177)
297 3pqc_A Probable GTP-binding pr 96.4 0.0016 5.5E-08 55.3 2.8 23 108-130 25-47 (195)
298 1svi_A GTP-binding protein YSX 96.4 0.0016 5.5E-08 55.7 2.8 24 107-130 24-47 (195)
299 3dl0_A Adenylate kinase; phosp 96.4 0.0018 6.1E-08 57.1 3.2 24 108-131 2-25 (216)
300 2fn4_A P23, RAS-related protei 96.3 0.0018 6.1E-08 54.3 3.0 23 108-130 11-33 (181)
301 3tw8_B RAS-related protein RAB 96.3 0.0016 5.6E-08 54.5 2.8 23 108-130 11-33 (181)
302 3lxw_A GTPase IMAP family memb 96.3 0.0018 6.2E-08 59.0 3.3 25 107-131 22-46 (247)
303 1qf9_A UMP/CMP kinase, protein 96.3 0.0018 6E-08 55.4 3.0 26 106-131 6-31 (194)
304 3clv_A RAB5 protein, putative; 96.3 0.002 6.7E-08 54.8 3.3 23 108-130 9-31 (208)
305 1uj2_A Uridine-cytidine kinase 96.3 0.0018 6.1E-08 58.9 3.1 25 107-131 23-47 (252)
306 2iyv_A Shikimate kinase, SK; t 96.3 0.0016 5.5E-08 55.8 2.6 25 107-131 3-27 (184)
307 1zak_A Adenylate kinase; ATP:A 96.3 0.0016 5.6E-08 57.8 2.7 27 105-131 4-30 (222)
308 3bc1_A RAS-related protein RAB 96.3 0.0033 1.1E-07 53.1 4.5 23 108-130 13-35 (195)
309 1r2q_A RAS-related protein RAB 96.3 0.0021 7.3E-08 53.1 3.2 22 108-129 8-29 (170)
310 1ukz_A Uridylate kinase; trans 96.3 0.002 6.9E-08 56.1 3.2 27 105-131 14-40 (203)
311 4dsu_A GTPase KRAS, isoform 2B 96.3 0.0022 7.5E-08 54.2 3.3 23 108-130 6-28 (189)
312 2cxx_A Probable GTP-binding pr 96.3 0.0019 6.4E-08 54.8 2.8 23 108-130 3-25 (190)
313 1upt_A ARL1, ADP-ribosylation 96.3 0.0023 7.8E-08 53.1 3.2 23 107-129 8-30 (171)
314 3b1v_A Ferrous iron uptake tra 96.3 0.0021 7.1E-08 59.8 3.2 23 108-130 5-27 (272)
315 3t1o_A Gliding protein MGLA; G 96.2 0.0025 8.5E-08 54.2 3.5 24 108-131 16-39 (198)
316 3llm_A ATP-dependent RNA helic 96.2 0.0014 4.8E-08 58.9 1.9 26 103-128 73-98 (235)
317 2grj_A Dephospho-COA kinase; T 96.2 0.0022 7.7E-08 56.6 3.2 24 107-130 13-36 (192)
318 2oil_A CATX-8, RAS-related pro 96.2 0.0024 8.1E-08 54.7 3.2 23 108-130 27-49 (193)
319 1r8s_A ADP-ribosylation factor 96.2 0.0025 8.4E-08 52.7 3.2 22 108-129 2-23 (164)
320 2hxs_A RAB-26, RAS-related pro 96.2 0.0026 8.8E-08 53.3 3.4 23 108-130 8-30 (178)
321 2y8e_A RAB-protein 6, GH09086P 96.2 0.0023 7.9E-08 53.4 3.0 23 108-130 16-38 (179)
322 2ce7_A Cell division protein F 96.2 0.00086 2.9E-08 67.6 0.3 32 98-131 43-74 (476)
323 3bos_A Putative DNA replicatio 96.2 0.0027 9.4E-08 55.8 3.6 27 105-131 51-77 (242)
324 1z0f_A RAB14, member RAS oncog 96.2 0.0026 9E-08 53.1 3.2 23 108-130 17-39 (179)
325 2a9k_A RAS-related protein RAL 96.2 0.0026 9E-08 53.5 3.2 23 108-130 20-42 (187)
326 2g6b_A RAS-related protein RAB 96.2 0.0027 9.1E-08 53.3 3.2 23 108-130 12-34 (180)
327 1v5w_A DMC1, meiotic recombina 96.2 0.0038 1.3E-07 59.8 4.6 28 102-129 118-145 (343)
328 2w58_A DNAI, primosome compone 96.2 0.0029 1E-07 55.0 3.6 25 107-131 55-79 (202)
329 2z43_A DNA repair and recombin 96.2 0.0045 1.5E-07 58.7 5.1 29 102-130 103-131 (324)
330 3con_A GTPase NRAS; structural 96.2 0.0027 9.2E-08 54.1 3.2 23 108-130 23-45 (190)
331 2bov_A RAla, RAS-related prote 96.2 0.006 2E-07 52.4 5.5 23 108-130 16-38 (206)
332 1a7j_A Phosphoribulokinase; tr 96.1 0.0013 4.6E-08 61.6 1.3 27 105-131 4-30 (290)
333 1moz_A ARL1, ADP-ribosylation 96.1 0.0015 5.3E-08 55.1 1.6 23 106-128 18-40 (183)
334 2efe_B Small GTP-binding prote 96.1 0.0029 9.9E-08 53.1 3.3 23 108-130 14-36 (181)
335 3a4m_A L-seryl-tRNA(SEC) kinas 96.1 0.0029 9.8E-08 58.0 3.5 27 105-131 3-29 (260)
336 3t5d_A Septin-7; GTP-binding p 96.1 0.0023 7.7E-08 59.1 2.6 23 108-130 10-32 (274)
337 1nrj_B SR-beta, signal recogni 96.1 0.0029 9.9E-08 55.3 3.2 25 107-131 13-37 (218)
338 2qby_A CDC6 homolog 1, cell di 96.1 0.0021 7.2E-08 60.7 2.5 27 105-131 44-70 (386)
339 3tlx_A Adenylate kinase 2; str 96.1 0.003 1E-07 57.4 3.4 27 105-131 28-54 (243)
340 2bme_A RAB4A, RAS-related prot 96.1 0.0029 9.8E-08 53.5 3.0 23 108-130 12-34 (186)
341 3tkl_A RAS-related protein RAB 96.1 0.0054 1.9E-07 52.2 4.8 23 108-130 18-40 (196)
342 3kkq_A RAS-related protein M-R 96.1 0.0065 2.2E-07 51.2 5.2 23 108-130 20-42 (183)
343 2gf9_A RAS-related protein RAB 96.1 0.0051 1.8E-07 52.4 4.5 23 108-130 24-46 (189)
344 2fg5_A RAB-22B, RAS-related pr 96.1 0.0052 1.8E-07 52.7 4.6 23 108-130 25-47 (192)
345 2f6r_A COA synthase, bifunctio 96.1 0.0028 9.5E-08 59.0 3.0 23 106-128 75-97 (281)
346 1vg8_A RAS-related protein RAB 96.1 0.0033 1.1E-07 54.2 3.3 23 108-130 10-32 (207)
347 1m7b_A RND3/RHOE small GTP-bin 96.1 0.0059 2E-07 51.9 4.9 23 108-130 9-31 (184)
348 2gf0_A GTP-binding protein DI- 96.0 0.0063 2.1E-07 52.0 5.0 23 108-130 10-32 (199)
349 2e87_A Hypothetical protein PH 96.0 0.0026 8.8E-08 61.2 2.8 25 106-130 167-191 (357)
350 2xtp_A GTPase IMAP family memb 96.0 0.003 1E-07 57.4 3.1 24 107-130 23-46 (260)
351 4dhe_A Probable GTP-binding pr 96.0 0.0018 6.3E-08 56.7 1.6 24 107-130 30-53 (223)
352 3b9p_A CG5977-PA, isoform A; A 96.0 0.0035 1.2E-07 57.9 3.5 26 106-131 54-79 (297)
353 2xb4_A Adenylate kinase; ATP-b 96.0 0.0033 1.1E-07 56.1 3.2 24 108-131 2-25 (223)
354 1jbk_A CLPB protein; beta barr 96.0 0.0038 1.3E-07 52.4 3.5 26 106-131 43-68 (195)
355 3t5g_A GTP-binding protein RHE 96.0 0.0067 2.3E-07 51.1 5.0 21 108-128 8-28 (181)
356 3oes_A GTPase rhebl1; small GT 96.0 0.0063 2.1E-07 52.6 4.9 25 107-131 25-49 (201)
357 1ksh_A ARF-like protein 2; sma 96.0 0.0033 1.1E-07 53.3 3.0 26 105-130 17-42 (186)
358 1wf3_A GTP-binding protein; GT 96.0 0.0033 1.1E-07 59.3 3.3 23 108-130 9-31 (301)
359 1fnn_A CDC6P, cell division co 96.0 0.0047 1.6E-07 58.6 4.4 24 108-131 46-69 (389)
360 3bwd_D RAC-like GTP-binding pr 96.0 0.0041 1.4E-07 52.2 3.6 24 107-130 9-32 (182)
361 1mh1_A RAC1; GTP-binding, GTPa 96.0 0.0037 1.3E-07 52.6 3.2 22 108-129 7-28 (186)
362 3iby_A Ferrous iron transport 96.0 0.0032 1.1E-07 57.8 3.0 23 108-130 3-25 (256)
363 1z06_A RAS-related protein RAB 96.0 0.0038 1.3E-07 53.3 3.3 23 108-130 22-44 (189)
364 3iev_A GTP-binding protein ERA 96.0 0.0035 1.2E-07 59.1 3.3 23 108-130 12-34 (308)
365 1x3s_A RAS-related protein RAB 96.0 0.0067 2.3E-07 51.5 4.8 23 108-130 17-39 (195)
366 3reg_A RHO-like small GTPase; 95.9 0.0078 2.7E-07 51.5 5.1 23 108-130 25-47 (194)
367 2wsm_A Hydrogenase expression/ 95.9 0.0037 1.3E-07 54.9 3.0 25 107-131 31-55 (221)
368 1zbd_A Rabphilin-3A; G protein 95.9 0.0041 1.4E-07 53.6 3.3 23 108-130 10-32 (203)
369 2a5j_A RAS-related protein RAB 95.9 0.0041 1.4E-07 53.3 3.2 23 108-130 23-45 (191)
370 2cjw_A GTP-binding protein GEM 95.9 0.0041 1.4E-07 53.8 3.2 22 108-129 8-29 (192)
371 3be4_A Adenylate kinase; malar 95.9 0.0038 1.3E-07 55.3 3.0 27 105-131 4-30 (217)
372 3dz8_A RAS-related protein RAB 95.9 0.0038 1.3E-07 53.4 3.0 23 108-130 25-47 (191)
373 1e4v_A Adenylate kinase; trans 95.9 0.0037 1.3E-07 55.1 3.0 24 108-131 2-25 (214)
374 2h92_A Cytidylate kinase; ross 95.9 0.0037 1.3E-07 55.0 2.8 26 106-131 3-28 (219)
375 2dby_A GTP-binding protein; GD 95.9 0.0036 1.2E-07 60.9 3.0 23 108-130 3-25 (368)
376 2qu8_A Putative nucleolar GTP- 95.9 0.004 1.4E-07 55.3 3.0 23 107-129 30-52 (228)
377 3a8t_A Adenylate isopentenyltr 95.9 0.0058 2E-07 58.9 4.4 27 105-131 39-65 (339)
378 3d3q_A TRNA delta(2)-isopenten 95.9 0.004 1.4E-07 60.0 3.2 25 107-131 8-32 (340)
379 1zj6_A ADP-ribosylation factor 95.9 0.0042 1.4E-07 52.9 3.0 22 107-128 17-38 (187)
380 4bas_A ADP-ribosylation factor 95.8 0.0039 1.3E-07 53.2 2.8 25 107-131 18-42 (199)
381 1zd9_A ADP-ribosylation factor 95.8 0.0046 1.6E-07 52.9 3.2 23 108-130 24-46 (188)
382 1jwy_B Dynamin A GTPase domain 95.8 0.004 1.4E-07 57.9 3.1 23 108-130 26-48 (315)
383 1ltq_A Polynucleotide kinase; 95.8 0.0043 1.5E-07 57.4 3.2 23 107-129 3-25 (301)
384 2il1_A RAB12; G-protein, GDP, 95.8 0.0039 1.3E-07 53.6 2.8 23 108-130 28-50 (192)
385 2atv_A RERG, RAS-like estrogen 95.8 0.0047 1.6E-07 53.1 3.3 24 107-130 29-52 (196)
386 2p5s_A RAS and EF-hand domain 95.8 0.0046 1.6E-07 53.4 3.2 26 105-130 27-52 (199)
387 2h57_A ADP-ribosylation factor 95.8 0.0032 1.1E-07 53.8 2.1 24 107-130 22-45 (190)
388 3cph_A RAS-related protein SEC 95.8 0.0047 1.6E-07 53.5 3.2 24 107-130 21-44 (213)
389 2h17_A ADP-ribosylation factor 95.8 0.0039 1.3E-07 52.9 2.6 23 107-129 22-44 (181)
390 3i8s_A Ferrous iron transport 95.8 0.0043 1.5E-07 57.4 3.1 23 108-130 5-27 (274)
391 3a1s_A Iron(II) transport prot 95.8 0.0047 1.6E-07 56.7 3.3 23 108-130 7-29 (258)
392 2iwr_A Centaurin gamma 1; ANK 95.8 0.0038 1.3E-07 52.5 2.5 22 108-129 9-30 (178)
393 2o52_A RAS-related protein RAB 95.8 0.0045 1.5E-07 53.7 2.9 23 108-130 27-49 (200)
394 2fv8_A H6, RHO-related GTP-bin 95.8 0.0048 1.6E-07 53.7 3.0 23 108-130 27-49 (207)
395 3c5c_A RAS-like protein 12; GD 95.7 0.0055 1.9E-07 52.5 3.3 23 108-130 23-45 (187)
396 1gwn_A RHO-related GTP-binding 95.7 0.0094 3.2E-07 52.2 4.9 23 108-130 30-52 (205)
397 1ak2_A Adenylate kinase isoenz 95.7 0.0058 2E-07 54.7 3.6 27 105-131 15-41 (233)
398 1sky_E F1-ATPase, F1-ATP synth 95.7 0.0041 1.4E-07 62.4 2.8 31 101-131 146-176 (473)
399 2f7s_A C25KG, RAS-related prot 95.7 0.0054 1.8E-07 53.5 3.2 23 108-130 27-49 (217)
400 2fh5_B SR-beta, signal recogni 95.7 0.0055 1.9E-07 53.4 3.2 24 107-130 8-31 (214)
401 2q3h_A RAS homolog gene family 95.7 0.0055 1.9E-07 52.7 3.2 24 106-129 20-43 (201)
402 3h4m_A Proteasome-activating n 95.7 0.0054 1.8E-07 56.1 3.2 27 105-131 50-76 (285)
403 1h65_A Chloroplast outer envel 95.7 0.0051 1.8E-07 56.4 3.0 23 108-130 41-63 (270)
404 2fu5_C RAS-related protein RAB 95.7 0.0037 1.3E-07 52.8 1.9 22 108-129 10-31 (183)
405 3def_A T7I23.11 protein; chlor 95.7 0.0053 1.8E-07 56.1 3.1 23 108-130 38-60 (262)
406 2p65_A Hypothetical protein PF 95.6 0.0051 1.7E-07 51.7 2.7 26 106-131 43-68 (187)
407 3zvl_A Bifunctional polynucleo 95.6 0.0055 1.9E-07 60.3 3.3 28 103-130 255-282 (416)
408 2j1l_A RHO-related GTP-binding 95.6 0.0055 1.9E-07 53.8 3.0 22 108-129 36-57 (214)
409 1l8q_A Chromosomal replication 95.6 0.0044 1.5E-07 58.2 2.4 25 107-131 38-62 (324)
410 2aka_B Dynamin-1; fusion prote 95.6 0.0052 1.8E-07 56.6 2.8 23 108-130 28-50 (299)
411 2gco_A H9, RHO-related GTP-bin 95.6 0.0058 2E-07 52.9 3.0 23 108-130 27-49 (201)
412 3llu_A RAS-related GTP-binding 95.6 0.0065 2.2E-07 52.4 3.3 24 108-131 22-45 (196)
413 4edh_A DTMP kinase, thymidylat 95.6 0.0067 2.3E-07 54.4 3.4 28 104-131 4-31 (213)
414 2atx_A Small GTP binding prote 95.6 0.0061 2.1E-07 52.1 3.0 22 108-129 20-41 (194)
415 2qmh_A HPR kinase/phosphorylas 95.6 0.009 3.1E-07 53.5 4.2 32 97-129 26-57 (205)
416 3cnl_A YLQF, putative uncharac 95.6 0.0065 2.2E-07 56.1 3.3 25 107-131 100-124 (262)
417 3crm_A TRNA delta(2)-isopenten 95.5 0.0064 2.2E-07 58.2 3.3 25 107-131 6-30 (323)
418 2hf9_A Probable hydrogenase ni 95.5 0.0063 2.1E-07 53.5 3.0 24 108-131 40-63 (226)
419 2b6h_A ADP-ribosylation factor 95.5 0.0056 1.9E-07 52.8 2.6 23 106-128 29-51 (192)
420 1njg_A DNA polymerase III subu 95.5 0.007 2.4E-07 52.5 3.2 24 108-131 47-70 (250)
421 4djt_A GTP-binding nuclear pro 95.5 0.0036 1.2E-07 54.7 1.3 22 108-129 13-34 (218)
422 3lv8_A DTMP kinase, thymidylat 95.5 0.0073 2.5E-07 55.1 3.3 27 105-131 26-52 (236)
423 2ocp_A DGK, deoxyguanosine kin 95.5 0.0075 2.6E-07 54.2 3.3 26 106-131 2-27 (241)
424 3v9p_A DTMP kinase, thymidylat 95.5 0.006 2.1E-07 55.3 2.6 28 104-131 23-50 (227)
425 2qz4_A Paraplegin; AAA+, SPG7, 95.5 0.0076 2.6E-07 54.2 3.3 25 107-131 40-64 (262)
426 3exa_A TRNA delta(2)-isopenten 95.4 0.0085 2.9E-07 57.3 3.7 26 106-131 3-28 (322)
427 1p5z_B DCK, deoxycytidine kina 95.4 0.006 2E-07 55.7 2.5 29 103-131 21-49 (263)
428 2hup_A RAS-related protein RAB 95.4 0.0081 2.8E-07 52.1 3.0 23 108-130 31-53 (201)
429 4tmk_A Protein (thymidylate ki 95.4 0.0088 3E-07 53.6 3.4 27 105-131 2-28 (213)
430 2i1q_A DNA repair and recombin 95.4 0.0091 3.1E-07 56.2 3.6 27 102-128 94-120 (322)
431 2g3y_A GTP-binding protein GEM 95.4 0.0085 2.9E-07 53.3 3.2 23 108-130 39-61 (211)
432 2yc2_C IFT27, small RAB-relate 95.3 0.0037 1.3E-07 53.7 0.8 22 108-129 22-43 (208)
433 4dcu_A GTP-binding protein ENG 95.3 0.0067 2.3E-07 60.2 2.6 24 107-130 24-47 (456)
434 4gzl_A RAS-related C3 botulinu 95.3 0.0085 2.9E-07 52.1 3.0 22 107-128 31-52 (204)
435 3cpj_B GTP-binding protein YPT 95.3 0.0093 3.2E-07 52.6 3.3 23 108-130 15-37 (223)
436 3ld9_A DTMP kinase, thymidylat 95.3 0.0098 3.4E-07 53.8 3.4 28 104-131 19-46 (223)
437 3tmk_A Thymidylate kinase; pho 95.3 0.009 3.1E-07 53.8 3.1 28 104-131 3-30 (216)
438 2x77_A ADP-ribosylation factor 95.3 0.0054 1.9E-07 52.2 1.6 22 107-128 23-44 (189)
439 3q3j_B RHO-related GTP-binding 95.2 0.01 3.4E-07 52.2 3.2 23 107-129 28-50 (214)
440 1ypw_A Transitional endoplasmi 95.2 0.0029 9.9E-08 67.6 -0.5 33 99-131 504-536 (806)
441 1u94_A RECA protein, recombina 95.2 0.011 3.8E-07 57.1 3.6 29 103-131 60-88 (356)
442 2zts_A Putative uncharacterize 95.1 0.014 4.9E-07 51.7 4.0 25 103-127 27-51 (251)
443 2j0v_A RAC-like GTP-binding pr 95.1 0.01 3.5E-07 51.5 3.0 22 108-129 11-32 (212)
444 3umf_A Adenylate kinase; rossm 95.0 0.012 4.2E-07 52.9 3.3 31 101-131 24-54 (217)
445 3foz_A TRNA delta(2)-isopenten 95.0 0.012 4E-07 56.2 3.2 26 106-131 10-35 (316)
446 3n70_A Transport activator; si 95.0 0.012 4E-07 48.9 2.7 27 105-131 23-49 (145)
447 3bh0_A DNAB-like replicative h 94.9 0.014 4.6E-07 55.2 3.3 35 96-130 58-92 (315)
448 3dm5_A SRP54, signal recogniti 94.9 0.014 4.9E-07 58.1 3.6 27 105-131 99-125 (443)
449 2z4s_A Chromosomal replication 94.9 0.012 4.1E-07 58.3 3.0 26 106-131 130-155 (440)
450 2chg_A Replication factor C sm 94.9 0.013 4.6E-07 50.2 3.0 23 109-131 41-63 (226)
451 3gj0_A GTP-binding nuclear pro 94.9 0.011 3.7E-07 51.9 2.4 24 108-131 17-41 (221)
452 1puj_A YLQF, conserved hypothe 94.9 0.014 4.8E-07 54.5 3.2 26 106-131 120-145 (282)
453 3syl_A Protein CBBX; photosynt 94.8 0.013 4.5E-07 54.1 3.0 27 105-131 66-92 (309)
454 3sr0_A Adenylate kinase; phosp 94.8 0.015 5.1E-07 51.8 3.2 24 108-131 2-25 (206)
455 3tqf_A HPR(Ser) kinase; transf 94.8 0.023 7.9E-07 49.8 4.3 29 99-128 10-38 (181)
456 1sxj_D Activator 1 41 kDa subu 94.8 0.014 4.7E-07 54.8 3.0 24 108-131 60-83 (353)
457 2r62_A Cell division protease 94.7 0.0071 2.4E-07 54.9 0.9 28 102-131 42-69 (268)
458 3p32_A Probable GTPase RV1496/ 94.7 0.016 5.6E-07 55.5 3.4 25 107-131 80-104 (355)
459 2v3c_C SRP54, signal recogniti 94.7 0.0079 2.7E-07 59.7 1.1 37 107-148 100-136 (432)
460 2v1u_A Cell division control p 94.6 0.013 4.6E-07 55.2 2.6 27 105-131 43-69 (387)
461 3eph_A TRNA isopentenyltransfe 94.6 0.017 5.7E-07 57.0 3.2 25 107-131 3-27 (409)
462 2orw_A Thymidine kinase; TMTK, 94.6 0.02 7E-07 49.8 3.4 26 105-130 2-28 (184)
463 3th5_A RAS-related C3 botulinu 93.6 0.0062 2.1E-07 52.7 0.0 22 107-128 31-52 (204)
464 4dkx_A RAS-related protein RAB 94.6 0.031 1.1E-06 49.9 4.6 21 108-128 15-35 (216)
465 3r7w_A Gtpase1, GTP-binding pr 94.5 0.016 5.6E-07 54.3 2.9 24 106-129 3-26 (307)
466 3hws_A ATP-dependent CLP prote 94.5 0.017 5.9E-07 55.1 2.9 25 107-131 52-76 (363)
467 3ec1_A YQEH GTPase; atnos1, at 94.5 0.018 6.1E-07 55.8 3.0 26 105-130 161-186 (369)
468 3uk6_A RUVB-like 2; hexameric 94.4 0.025 8.7E-07 53.5 4.0 27 105-131 69-95 (368)
469 2x2e_A Dynamin-1; nitration, h 94.4 0.013 4.6E-07 56.0 2.0 23 108-130 33-55 (353)
470 1d2n_A N-ethylmaleimide-sensit 94.4 0.019 6.6E-07 52.3 3.0 24 108-131 66-89 (272)
471 3l0i_B RAS-related protein RAB 94.4 0.0041 1.4E-07 53.7 -1.5 22 108-129 35-56 (199)
472 2hjg_A GTP-binding protein ENG 94.4 0.016 5.6E-07 57.0 2.6 23 108-130 5-27 (436)
473 1tue_A Replication protein E1; 94.3 0.018 6.3E-07 51.8 2.5 29 103-131 55-83 (212)
474 1ofh_A ATP-dependent HSL prote 94.3 0.018 6.3E-07 52.8 2.6 25 107-131 51-75 (310)
475 4hlc_A DTMP kinase, thymidylat 94.3 0.024 8.3E-07 50.3 3.3 26 106-131 2-27 (205)
476 1lnz_A SPO0B-associated GTP-bi 94.2 0.024 8.2E-07 54.4 3.3 31 99-129 151-181 (342)
477 3h2y_A GTPase family protein; 94.2 0.019 6.4E-07 55.6 2.5 26 105-130 159-184 (368)
478 1xwi_A SKD1 protein; VPS4B, AA 94.2 0.027 9.2E-07 53.3 3.5 24 107-130 46-69 (322)
479 3t15_A Ribulose bisphosphate c 94.2 0.023 7.9E-07 52.9 3.0 25 107-131 37-61 (293)
480 1wxq_A GTP-binding protein; st 94.2 0.022 7.6E-07 55.7 3.0 23 108-130 2-24 (397)
481 3geh_A MNME, tRNA modification 94.1 0.018 6.2E-07 57.6 2.3 26 105-130 223-248 (462)
482 2qgz_A Helicase loader, putati 94.1 0.029 1E-06 52.8 3.6 26 106-131 152-177 (308)
483 2xau_A PRE-mRNA-splicing facto 94.1 0.017 5.8E-07 61.4 2.1 29 103-131 106-134 (773)
484 3gmt_A Adenylate kinase; ssgci 94.0 0.029 9.9E-07 51.1 3.2 25 107-131 9-33 (230)
485 1g8f_A Sulfate adenylyltransfe 94.0 0.021 7.2E-07 57.9 2.5 28 104-131 393-420 (511)
486 3eie_A Vacuolar protein sortin 94.0 0.031 1.1E-06 52.5 3.5 25 107-131 52-76 (322)
487 1m8p_A Sulfate adenylyltransfe 93.9 0.027 9.1E-07 57.9 3.2 27 105-131 395-421 (573)
488 2qpt_A EH domain-containing pr 93.9 0.024 8.2E-07 57.9 2.8 24 107-130 66-89 (550)
489 3d8b_A Fidgetin-like protein 1 93.9 0.032 1.1E-06 53.4 3.5 27 105-131 116-142 (357)
490 3co5_A Putative two-component 93.9 0.018 6.1E-07 47.7 1.5 24 106-129 27-50 (143)
491 2qby_B CDC6 homolog 3, cell di 93.9 0.031 1.1E-06 52.9 3.4 25 107-131 46-70 (384)
492 1xp8_A RECA protein, recombina 93.9 0.032 1.1E-06 54.1 3.4 28 103-130 71-98 (366)
493 2bjv_A PSP operon transcriptio 93.9 0.042 1.4E-06 49.7 4.1 26 106-131 29-54 (265)
494 2vhj_A Ntpase P4, P4; non- hyd 93.8 0.033 1.1E-06 53.3 3.5 28 102-129 119-146 (331)
495 3pfi_A Holliday junction ATP-d 93.8 0.029 9.8E-07 52.6 3.0 24 108-131 57-80 (338)
496 3pvs_A Replication-associated 93.8 0.034 1.2E-06 55.3 3.6 24 108-131 52-75 (447)
497 1x6v_B Bifunctional 3'-phospho 93.8 0.032 1.1E-06 58.0 3.4 26 105-130 51-76 (630)
498 2qen_A Walker-type ATPase; unk 93.7 0.037 1.3E-06 51.4 3.5 24 106-129 31-54 (350)
499 1um8_A ATP-dependent CLP prote 93.7 0.03 1E-06 53.6 2.9 25 107-131 73-97 (376)
500 2q6t_A DNAB replication FORK h 93.7 0.03 1E-06 55.3 3.0 33 99-131 193-225 (444)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=2.9e-45 Score=359.31 Aligned_cols=217 Identities=14% Similarity=0.140 Sum_probs=173.5
Q ss_pred CCCcEEEEEEEEEECCC-ceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC
Q 018829 71 IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 71 ~~~~l~i~~l~~~y~~~-~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 149 (350)
.+++|+++||+++|+.+ ..+++ |++|||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|+++
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~a---L~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~-----p~~G~I~i~G~~i 92 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQA---LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-----PTEGSVLVDGQEL 92 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEC
T ss_pred CCceEEEEeEEEEeCCCCCCeEE---EEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC-----CCceEEEECCEEC
Confidence 45789999999999643 22456 666999999999999999999999999999999999 9999999999998
Q ss_pred CCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccc
Q 018829 150 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 229 (350)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 229 (350)
...... .....++.++|++|+...+..+ ++.+|+.++.... ..+..+.++++.++|+.+||.+
T Consensus 93 ~~~~~~-~~~~~r~~Ig~v~Q~~~l~~~~----------TV~env~~~~~~~-~~~~~~~~~~v~~lL~~vgL~~----- 155 (366)
T 3tui_C 93 TTLSES-ELTKARRQIGMIFQHFNLLSSR----------TVFGNVALPLELD-NTPKDEVKRRVTELLSLVGLGD----- 155 (366)
T ss_dssp SSCCHH-HHHHHHTTEEEECSSCCCCTTS----------CHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHTCGG-----
T ss_pred CcCCHH-HHHHHhCcEEEEeCCCccCCCC----------CHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCch-----
Confidence 621111 1111123567777766544332 4455555544322 2345677788999999999987
Q ss_pred cceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec-
Q 018829 230 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 282 (350)
Q Consensus 230 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH- 282 (350)
+++++|.+||||||||++||||| ||||++||+ |+|||+|||
T Consensus 156 ------------~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHd 223 (366)
T 3tui_C 156 ------------KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE 223 (366)
T ss_dssp ------------GTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESC
T ss_pred ------------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 56999999999999999999999 999999984 899999999
Q ss_pred -hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 018829 283 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 325 (350)
Q Consensus 283 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 325 (350)
+.+.++||||+ +|++|++++.|++++++..|.+++++.++..
T Consensus 224 l~~~~~~aDrv~-vl~~G~iv~~g~~~ev~~~p~~~~~~~~~~~ 266 (366)
T 3tui_C 224 MDVVKRICDCVA-VISNGELIEQDTVSEVFSHPKTPLAQKFIQS 266 (366)
T ss_dssp HHHHHHHCSEEE-EEETTEEEECCBHHHHHSSCCSHHHHHHHHH
T ss_pred HHHHHHhCCEEE-EEECCEEEEEcCHHHHHhCCCcHHHHHHHhh
Confidence 57788999996 5999999999999999999998887777654
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.8e-44 Score=353.16 Aligned_cols=208 Identities=13% Similarity=0.194 Sum_probs=168.5
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
++|+++||+++|++ .++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 3 ~~l~i~~ls~~y~~---~~~---L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~G~I~i~G~~i~~~ 71 (359)
T 3fvq_A 3 AALHIGHLSKSFQN---TPV---LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ-----PDSGEISLSGKTIFSK 71 (359)
T ss_dssp CCEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEEESS
T ss_pred cEEEEEeEEEEECC---EEE---EEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC-----CCCcEEEECCEECccc
Confidence 37999999999974 345 677999999999999999999999999999999999 9999999999987310
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
.......++.+++++|+.. +++. ++.+|+.++.... ..+..+.++++.++++.++|.+
T Consensus 72 --~~~~~~~~r~ig~vfQ~~~-----------l~p~ltV~eni~~~l~~~-~~~~~~~~~~v~~~l~~~gL~~------- 130 (359)
T 3fvq_A 72 --NTNLPVRERRLGYLVQEGV-----------LFPHLTVYRNIAYGLGNG-KGRTAQERQRIEAMLELTGISE------- 130 (359)
T ss_dssp --SCBCCGGGSCCEEECTTCC-----------CCTTSCHHHHHHTTSTTS-SCCSHHHHHHHHHHHHHHTCGG-------
T ss_pred --ccccchhhCCEEEEeCCCc-----------CCCCCCHHHHHHHHHHHc-CCChHHHHHHHHHHHHHcCCch-------
Confidence 0011112234556555544 3443 6677777765532 2345667788999999999988
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--h
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 283 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~ 283 (350)
+++++|.+||||||||++||||| ||||++||. |+|+|+||| +
T Consensus 131 ----------~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ 200 (359)
T 3fvq_A 131 ----------LAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE 200 (359)
T ss_dssp ----------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred ----------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 56999999999999999999999 999999984 899999999 5
Q ss_pred HHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 284 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
++..+||||+ +|++|+|++.|++++++..|...+.+.++
T Consensus 201 ea~~~aDri~-vl~~G~i~~~g~~~el~~~p~~~~~a~~~ 239 (359)
T 3fvq_A 201 EALQYADRIA-VMKQGRILQTASPHELYRQPADLDAALFI 239 (359)
T ss_dssp HHHHHCSEEE-EEETTEEEEEECHHHHHHSCSCHHHHHHH
T ss_pred HHHHHCCEEE-EEECCEEEEEeCHHHHHhCcccHHHHHhc
Confidence 7889999996 59999999999999999988765544444
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=5.6e-44 Score=352.02 Aligned_cols=206 Identities=12% Similarity=0.152 Sum_probs=170.0
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
.+|+++||+++|+. ..+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 2 ~~l~~~~l~~~yg~---~~~---L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~G~I~i~G~~~~~- 69 (381)
T 3rlf_A 2 ASVQLQNVTKAWGE---VVV---SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET-----ITSGDLFIGEKRMND- 69 (381)
T ss_dssp CCEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT-
T ss_pred CEEEEEeEEEEECC---EEE---EeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC-----CCCeEEEECCEECCC-
Confidence 46999999999974 345 677999999999999999999999999999999999 999999999999862
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
....++.+++++|+...+..+ ++.+|+.++.... ..++++.++++.++++.+++.+
T Consensus 70 -----~~~~~r~ig~VfQ~~~l~p~l----------tV~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~-------- 125 (381)
T 3rlf_A 70 -----TPPAERGVGMVFQSYALYPHL----------SVAENMSFGLKLA-GAKKEVINQRVNQVAEVLQLAH-------- 125 (381)
T ss_dssp -----CCGGGSCEEEECTTCCCCTTS----------CHHHHHTHHHHHT-TCCHHHHHHHHHHHHHHTTCGG--------
T ss_pred -----CCHHHCCEEEEecCCcCCCCC----------CHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCch--------
Confidence 111123456666665444332 5556666655432 3445677888999999999987
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 284 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~ 284 (350)
+++++|.+||||||||++||||| ||||++||. |+|+|+||| ++
T Consensus 126 ---------~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~e 196 (381)
T 3rlf_A 126 ---------LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVE 196 (381)
T ss_dssp ---------GTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHH
T ss_pred ---------hhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 56999999999999999999999 999999984 899999999 57
Q ss_pred HHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 324 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 324 (350)
+..+||||+ +|++|++++.|++++++..|...+++.++.
T Consensus 197 a~~~aDri~-vl~~G~i~~~g~~~~l~~~p~~~~v~~~~g 235 (381)
T 3rlf_A 197 AMTLADKIV-VLDAGRVAQVGKPLELYHYPADRFVAGFIG 235 (381)
T ss_dssp HHHHCSEEE-EEETTEEEEEECHHHHHHCCSBHHHHHHSS
T ss_pred HHHhCCEEE-EEECCEEEEEeCHHHHHhCCccHHHHHhcC
Confidence 889999996 599999999999999999998777665543
No 4
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.4e-43 Score=335.80 Aligned_cols=202 Identities=13% Similarity=0.204 Sum_probs=159.5
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
+++|+++||+++|+.+.. + |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 5 ~~~l~i~~ls~~y~~~~~--~---L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~-----p~~G~I~~~G~~i~~ 74 (275)
T 3gfo_A 5 DYILKVEELNYNYSDGTH--A---LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK-----PSSGRILFDNKPIDY 74 (275)
T ss_dssp CEEEEEEEEEEECTTSCE--E---EEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECCC
T ss_pred CcEEEEEEEEEEECCCCe--E---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCeEEEECCEECCc
Confidence 357999999999975433 4 777999999999999999999999999999999999 999999999999841
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
. ...... .++.++|++|++.. .++..++.+|+.++.... ..+..+.++++.++++.+++.+
T Consensus 75 ~-~~~~~~-~~~~ig~v~Q~~~~---------~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~------- 135 (275)
T 3gfo_A 75 S-RKGIMK-LRESIGIVFQDPDN---------QLFSASVYQDVSFGAVNM-KLPEDEIRKRVDNALKRTGIEH------- 135 (275)
T ss_dssp S-HHHHHH-HHHSEEEECSSGGG---------TCCSSBHHHHHHHHHHTS-CCCHHHHHHHHHHHHHHTTCGG-------
T ss_pred c-cccHHH-HhCcEEEEEcCccc---------ccccCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCch-------
Confidence 0 000001 12356677776421 111224455555544322 2345667788999999999987
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--h
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 283 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~ 283 (350)
++++++.+||||||||++||||| ||||++||+ |+|||+||| +
T Consensus 136 ----------~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~ 205 (275)
T 3gfo_A 136 ----------LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID 205 (275)
T ss_dssp ----------GTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS
T ss_pred ----------hhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH
Confidence 56899999999999999999999 999999874 789999999 5
Q ss_pred HHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 284 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
.+..+||||+ +|++|++++.|++++++..
T Consensus 206 ~~~~~~drv~-~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 206 IVPLYCDNVF-VMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp SGGGGCSEEE-EEETTEEEEEECHHHHTHH
T ss_pred HHHHhCCEEE-EEECCEEEEECCHHHHhcC
Confidence 7788999996 5999999999999998764
No 5
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=5.5e-43 Score=342.40 Aligned_cols=212 Identities=13% Similarity=0.200 Sum_probs=166.6
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
.+|+++||+++|+. ....+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 2 ~~l~i~~l~~~y~~-~~~~v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~~ 72 (353)
T 1oxx_K 2 VRIIVKNVSKVFKK-GKVVA---LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV-----PSTGELYFDDRLVASN 72 (353)
T ss_dssp CCEEEEEEEEEEGG-GTEEE---EEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC-----CSEEEEEETTEEEEET
T ss_pred cEEEEEeEEEEECC-Eeeee---EeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECccc
Confidence 46999999999964 22014 777999999999999999999999999999999999 9999999999987410
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
. .......++.++|++|+...+..+ ++.+|+.++.... ..+..+.++++.++++.++|.+
T Consensus 73 ~-~~~~~~~~r~ig~v~Q~~~l~~~l----------tv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~-------- 132 (353)
T 1oxx_K 73 G-KLIVPPEDRKIGMVFQTWALYPNL----------TAFENIAFPLTNM-KMSKEEIRKRVEEVAKILDIHH-------- 132 (353)
T ss_dssp T-EESSCGGGSCEEEEETTSCCCTTS----------CHHHHHHGGGTTS-SCCHHHHHHHHHHHHHHTTCGG--------
T ss_pred c-cccCChhhCCEEEEeCCCccCCCC----------CHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCch--------
Confidence 0 000111123456666654443322 5667777665422 2334566778999999999987
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 284 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~ 284 (350)
+++++|.+||||||||++||||| |||+++||. |+|+|+||| ++
T Consensus 133 ---------~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 203 (353)
T 1oxx_K 133 ---------VLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPAD 203 (353)
T ss_dssp ---------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHH
T ss_pred ---------HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 56999999999999999999999 999999984 899999999 57
Q ss_pred HHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
+..+|||++ +|++|++++.|++++++..|...+.+.++
T Consensus 204 ~~~~adri~-vl~~G~i~~~g~~~~l~~~p~~~~~~~~~ 241 (353)
T 1oxx_K 204 IFAIADRVG-VLVKGKLVQVGKPEDLYDNPVSIQVASLI 241 (353)
T ss_dssp HHHHCSEEE-EEETTEEEEEECHHHHHHSCSSHHHHHHH
T ss_pred HHHhCCEEE-EEECCEEEEEcCHHHHHhCcccHHHHHhc
Confidence 788999996 59999999999999999988766554444
No 6
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=7.8e-43 Score=328.12 Aligned_cols=211 Identities=16% Similarity=0.125 Sum_probs=161.6
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC-
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG- 151 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~- 151 (350)
++|+++||+++|+. .++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 5 ~~l~i~~l~~~y~~---~~v---l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~~ 73 (262)
T 1b0u_A 5 NKLHVIDLHKRYGG---HEV---LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK-----PSEGAIIVNGQNINLV 73 (262)
T ss_dssp CCEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECCEE
T ss_pred ceEEEeeEEEEECC---EEE---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEcccc
Confidence 47999999999964 234 777999999999999999999999999999999999 999999999998741
Q ss_pred ----C----ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCC
Q 018829 152 ----T----YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE 223 (350)
Q Consensus 152 ----~----~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~ 223 (350)
. .........++.++|++|+...+..+ ++.+|+.++.......+....++++.++++.+|+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~l----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~ 143 (262)
T 1b0u_A 74 RDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHM----------TVLENVMEAPIQVLGLSKHDARERALKYLAKVGID 143 (262)
T ss_dssp ECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTS----------CHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCC
T ss_pred ccccccccccChhhHHHHhcceEEEecCcccCCCC----------cHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCC
Confidence 0 00000000122456777765444332 34444444321111223345567788999999998
Q ss_pred Cccccccceeeeecchhhh-hccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceE
Q 018829 224 PSVIRKVNFVIFVVDGLAV-LKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPV 277 (350)
Q Consensus 224 ~~~~~~~~~~~~vv~~~~~-~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TV 277 (350)
+ . +++++.+||||||||++||||| ||||++||+ |+||
T Consensus 144 ~-----------------~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tv 206 (262)
T 1b0u_A 144 E-----------------RAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTM 206 (262)
T ss_dssp H-----------------HHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCE
T ss_pred c-----------------hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEE
Confidence 7 5 6899999999999999999999 999999874 8999
Q ss_pred EEEec--hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 018829 278 VVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 322 (350)
Q Consensus 278 IiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 322 (350)
|++|| +.+..+||+++ +|++|++++.|++++++..+..++++.+
T Consensus 207 i~vtHd~~~~~~~~d~v~-~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 252 (262)
T 1b0u_A 207 VVVTHEMGFARHVSSHVI-FLHQGKIEEEGDPEQVFGNPQSPRLQQF 252 (262)
T ss_dssp EEECSCHHHHHHHCSEEE-EEETTEEEEEECHHHHHHSCCSHHHHHH
T ss_pred EEEeCCHHHHHHhCCEEE-EEECCEEEEeCCHHHHHhCcchHHHHHH
Confidence 99999 56778999996 5999999999999999887665544433
No 7
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.8e-42 Score=339.72 Aligned_cols=205 Identities=14% Similarity=0.207 Sum_probs=165.8
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
.+|+++||+++|+. . ++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 2 ~~l~~~~l~~~y~~-~--~v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~- 69 (362)
T 2it1_A 2 VEIKLENIVKKFGN-F--TA---LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK-----PTSGKIYFDEKDVTE- 69 (362)
T ss_dssp CCEEEEEEEEESSS-S--EE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT-
T ss_pred cEEEEEeEEEEECC-E--EE---EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC-----CCceEEEECCEECCc-
Confidence 36999999999964 2 34 777999999999999999999999999999999999 999999999999852
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
....++.+++++|+...+..+ ++.+|+.++.... ..+..+.++++.++++.+++.+
T Consensus 70 -----~~~~~r~ig~v~Q~~~l~~~l----------tv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~-------- 125 (362)
T 2it1_A 70 -----LPPKDRNVGLVFQNWALYPHM----------TVYKNIAFPLELR-KAPREEIDKKVREVAKMLHIDK-------- 125 (362)
T ss_dssp -----SCGGGTTEEEECTTCCCCTTS----------CHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHTTCTT--------
T ss_pred -----CCHhHCcEEEEecCcccCCCC----------CHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCch--------
Confidence 111123566776665544333 4555555554322 2334566778999999999988
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 284 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~ 284 (350)
+++++|.+||||||||++||||| |||+++||. |+|+|+||| ++
T Consensus 126 ---------~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 196 (362)
T 2it1_A 126 ---------LLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAE 196 (362)
T ss_dssp ---------CTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred ---------HhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 56999999999999999999999 999999984 899999999 57
Q ss_pred HHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
+..+||||+ +|++|++++.|++++++..|...+.+.++
T Consensus 197 a~~~adri~-vl~~G~i~~~g~~~~~~~~p~~~~~~~~~ 234 (362)
T 2it1_A 197 ALAMADRIA-VIREGEILQVGTPDEVYYKPKYKFVGGFL 234 (362)
T ss_dssp HHHHCSEEE-EEETTEEEEEECHHHHHHSCSBHHHHHHS
T ss_pred HHHhCCEEE-EEECCEEEEEcCHHHHHhCccchHHHHHc
Confidence 788999996 59999999999999999988766554443
No 8
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=8e-43 Score=328.51 Aligned_cols=206 Identities=14% Similarity=0.182 Sum_probs=159.9
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
++|+++||+++|+. .++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++. .
T Consensus 23 ~~l~i~~l~~~y~~---~~v---L~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~i~-~ 90 (263)
T 2olj_A 23 QMIDVHQLKKSFGS---LEV---LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED-----FDEGEIIIDGINLK-A 90 (263)
T ss_dssp CSEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEESS-S
T ss_pred heEEEEeEEEEECC---EEE---EEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCEECC-C
Confidence 47999999999964 234 777999999999999999999999999999999999 99999999999874 1
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
....... .++.++|++|+...+..+ ++.+|+.++.......+....++++.++++.+++.+
T Consensus 91 ~~~~~~~-~~~~i~~v~Q~~~l~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-------- 151 (263)
T 2olj_A 91 KDTNLNK-VREEVGMVFQRFNLFPHM----------TVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKD-------- 151 (263)
T ss_dssp TTCCHHH-HHHHEEEECSSCCCCTTS----------CHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGG--------
T ss_pred ccccHHH-HhCcEEEEeCCCcCCCCC----------CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch--------
Confidence 0000001 123467777765544332 344444443211112233455677889999999987
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 285 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~ 285 (350)
++++++.+||||||||++||||| ||||++||+ |+|||++|| +.+
T Consensus 152 ---------~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~ 222 (263)
T 2olj_A 152 ---------KAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFA 222 (263)
T ss_dssp ---------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred ---------HhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH
Confidence 45899999999999999999999 999999874 899999999 577
Q ss_pred HhcccEEEEEecCCeEeecCCccccccCCCCCCh
Q 018829 286 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDP 319 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~ 319 (350)
..+||+++ +|++|++++.|++++++..+...++
T Consensus 223 ~~~~d~v~-~l~~G~i~~~g~~~~~~~~~~~~~~ 255 (263)
T 2olj_A 223 REVGDRVL-FMDGGYIIEEGKPEDLFDRPQHERT 255 (263)
T ss_dssp HHHCSEEE-EEETTEEEEEECHHHHHHSCCSHHH
T ss_pred HHhCCEEE-EEECCEEEEECCHHHHHhCcccHHH
Confidence 78999996 5999999999999999887655443
No 9
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=9.8e-43 Score=342.64 Aligned_cols=205 Identities=15% Similarity=0.186 Sum_probs=163.6
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
+.+|+++||+++|++ .++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 9 M~~l~~~~l~~~y~~---~~v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~ 77 (372)
T 1v43_A 9 MVEVKLENLTKRFGN---FTA---VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE-----PTEGRIYFGDRDVTY 77 (372)
T ss_dssp CCCEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT
T ss_pred eeeEEEEEEEEEECC---EEE---EeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCceEEEECCEECCC
Confidence 456999999999964 245 677999999999999999999999999999999999 999999999999851
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
....++.++|+ +|+..+++. ++.+|+.++.... ..+..+.++++.++++.++|.+
T Consensus 78 ------~~~~~r~ig~v-----------~Q~~~l~~~ltv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~------ 133 (372)
T 1v43_A 78 ------LPPKDRNISMV-----------FQSYAVWPHMTVYENIAFPLKIK-KFPKDEIDKRVRWAAELLQIEE------ 133 (372)
T ss_dssp ------SCGGGGTEEEE-----------EC------CCCHHHHHHTTCC---CCCHHHHHHHHHHHHHHTTCGG------
T ss_pred ------CChhhCcEEEE-----------ecCcccCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChh------
Confidence 11111234444 455455554 6778887765432 2334556778999999999987
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 282 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH-- 282 (350)
+++++|.+||||||||++||||| |||+++||. |+|+|++||
T Consensus 134 -----------~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~ 202 (372)
T 1v43_A 134 -----------LLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ 202 (372)
T ss_dssp -----------GTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 56999999999999999999999 999999984 899999999
Q ss_pred hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 283 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 283 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
+++..+|||++ +|++|++++.|++++++..|...+.+.++
T Consensus 203 ~~a~~~adri~-vl~~G~i~~~g~~~~l~~~p~~~~~a~~~ 242 (372)
T 1v43_A 203 VEAMTMGDRIA-VMNRGQLLQIGSPTEVYLRPNSVFVATFI 242 (372)
T ss_dssp HHHHHHCSEEE-EEETTEEEEEECHHHHHHCCSBHHHHHHS
T ss_pred HHHHHhCCEEE-EEECCEEEEeCCHHHHHhCcccHHHHHHh
Confidence 57788999996 59999999999999999988766555444
No 10
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=2e-42 Score=338.42 Aligned_cols=207 Identities=14% Similarity=0.163 Sum_probs=167.1
Q ss_pred CCCcEEEEEEEEEE-CCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC
Q 018829 71 IGSLTDAKNKILSY-TPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 71 ~~~~l~i~~l~~~y-~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 149 (350)
..++|+++||+++| +. .. + |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++
T Consensus 11 ~~~~l~~~~l~~~y~g~-~~--v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i 79 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGG-AR--S---VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER-----PTKGDVWIGGKRV 79 (355)
T ss_dssp CCEEEEEEEEEECCTTS-TT--C---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEC
T ss_pred CCceEEEEEEEEEEcCC-CE--E---EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEECCEEC
Confidence 34689999999999 54 22 3 777999999999999999999999999999999999 9999999999998
Q ss_pred CCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccc
Q 018829 150 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 229 (350)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 229 (350)
.. ....++.+++++|+...+..+ ++.+|+.++.... ..+..+.++++.++++.++|.+
T Consensus 80 ~~------~~~~~r~ig~v~Q~~~l~~~l----------tv~eni~~~l~~~-~~~~~~~~~~v~~~l~~~gL~~----- 137 (355)
T 1z47_A 80 TD------LPPQKRNVGLVFQNYALFQHM----------TVYDNVSFGLREK-RVPKDEMDARVRELLRFMRLES----- 137 (355)
T ss_dssp TT------CCGGGSSEEEECGGGCCCTTS----------CHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHTTCGG-----
T ss_pred Cc------CChhhCcEEEEecCcccCCCC----------CHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChh-----
Confidence 51 111123456666665444332 5555665554322 2334566788999999999987
Q ss_pred cceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec-
Q 018829 230 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 282 (350)
Q Consensus 230 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH- 282 (350)
+++++|.+||||||||++||||| |||+++||. |+|+|+|||
T Consensus 138 ------------~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd 205 (355)
T 1z47_A 138 ------------YANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHD 205 (355)
T ss_dssp ------------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSC
T ss_pred ------------HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCC
Confidence 56999999999999999999999 999999984 899999999
Q ss_pred -hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 283 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 283 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
+++..+|||++ +|++|++++.|++++++..|...+.+.++
T Consensus 206 ~~~a~~~adri~-vl~~G~i~~~g~~~~l~~~p~~~~~~~~~ 246 (355)
T 1z47_A 206 QEEALEVADRVL-VLHEGNVEQFGTPEEVYEKPGTLFVASFI 246 (355)
T ss_dssp HHHHHHHCSEEE-EEETTEEEEEECHHHHHHSCSSHHHHHHT
T ss_pred HHHHHHhCCEEE-EEECCEEEEEcCHHHHHhCccchHHHHhc
Confidence 57788999996 59999999999999999988766554444
No 11
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=2.1e-42 Score=338.82 Aligned_cols=205 Identities=13% Similarity=0.192 Sum_probs=165.2
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
.+|+++||+++|++ .++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 2 ~~l~~~~l~~~y~~---~~v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~- 69 (359)
T 2yyz_A 2 PSIRVVNLKKYFGK---VKA---VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK-----PTSGEIYFDDVLVND- 69 (359)
T ss_dssp CCEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT-
T ss_pred cEEEEEEEEEEECC---EEE---EeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC-----CCccEEEECCEECCC-
Confidence 36999999999964 345 677999999999999999999999999999999999 999999999999852
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
....++.++|++|+...+..+ ++.+|+.++.... ..+..+.++++.++++.+++.+
T Consensus 70 -----~~~~~r~ig~v~Q~~~l~~~l----------tv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~-------- 125 (359)
T 2yyz_A 70 -----IPPKYREVGMVFQNYALYPHM----------TVFENIAFPLRAR-RISKDEVEKRVVEIARKLLIDN-------- 125 (359)
T ss_dssp -----SCGGGTTEEEECSSCCCCTTS----------CHHHHHHGGGSSS-CSHHHHTTHHHHHHHHHTTCGG--------
T ss_pred -----CChhhCcEEEEecCcccCCCC----------CHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCch--------
Confidence 111123456666665444322 5666666654322 1223344577899999999987
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 284 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~ 284 (350)
+++++|.+||||||||++||||| |||+++||. |+|+|++|| ++
T Consensus 126 ---------~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 196 (359)
T 2yyz_A 126 ---------LLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAE 196 (359)
T ss_dssp ---------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHH
T ss_pred ---------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 56999999999999999999999 999999984 899999999 57
Q ss_pred HHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
+..+|||++ +|++|++++.|++++++..|...+.+.++
T Consensus 197 ~~~~adri~-vl~~G~i~~~g~~~~l~~~p~~~~~~~~~ 234 (359)
T 2yyz_A 197 AMTMASRIA-VFNQGKLVQYGTPDEVYDSPKNMFVASFI 234 (359)
T ss_dssp HHHHCSEEE-EEETTEEEEEECHHHHHHSCSBHHHHHHS
T ss_pred HHHhCCEEE-EEECCEEEEeCCHHHHHhCcccHHHHHHh
Confidence 788999996 59999999999999999988766554444
No 12
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=3.2e-43 Score=337.87 Aligned_cols=222 Identities=14% Similarity=0.162 Sum_probs=161.2
Q ss_pred HHHHHHHHHHccchhcccC--------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHH
Q 018829 52 RRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 123 (350)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~~--------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl 123 (350)
.+..|+.++++.+++.... ..+.|+++||+|+|+++..+ |+++||+|++||++||+||||||||||+
T Consensus 23 ~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~v-----L~~isl~i~~Ge~vaivG~sGsGKSTLl 97 (306)
T 3nh6_A 23 IDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRET-----LQDVSFTVMPGQTLALVGPSGAGKSTIL 97 (306)
T ss_dssp CCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESSTTCEE-----EEEEEEEECTTCEEEEESSSCHHHHHHH
T ss_pred HHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCCCCce-----eeeeeEEEcCCCEEEEECCCCchHHHHH
Confidence 4566888888876653221 13469999999999654434 7779999999999999999999999999
Q ss_pred HHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcC
Q 018829 124 NRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR 203 (350)
Q Consensus 124 ~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~ 203 (350)
++|+|+++ |++|+|.++|+++.... ... .++.++|++|++..|.. ++.+|+.++...
T Consensus 98 ~ll~gl~~-----p~~G~I~i~G~~i~~~~---~~~-~r~~i~~v~Q~~~lf~~-----------Tv~eNi~~~~~~--- 154 (306)
T 3nh6_A 98 RLLFRFYD-----ISSGCIRIDGQDISQVT---QAS-LRSHIGVVPQDTVLFND-----------TIADNIRYGRVT--- 154 (306)
T ss_dssp HHHTTSSC-----CSEEEEEETTEETTSBC---HHH-HHHTEEEECSSCCCCSE-----------EHHHHHHTTSTT---
T ss_pred HHHHcCCC-----CCCcEEEECCEEcccCC---HHH-HhcceEEEecCCccCcc-----------cHHHHHHhhccc---
Confidence 99999999 99999999999986210 001 12345666666554433 455566554321
Q ss_pred CCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-
Q 018829 204 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD- 273 (350)
Q Consensus 204 ~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~- 273 (350)
. ..+++.++++.+++.+.+...++++.. ...+.+.+||||||||++||||| ||||++||.
T Consensus 155 ~----~~~~~~~~~~~~~l~~~i~~lp~gl~t------~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~ 224 (306)
T 3nh6_A 155 A----GNDEVEAAAQAAGIHDAIMAFPEGYRT------QVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTS 224 (306)
T ss_dssp C----CHHHHHHHHHHHTCHHHHHHSTTGGGC------EESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHH
T ss_pred C----CHHHHHHHHHHhCcHHHHHhccchhhh------HhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 1 123455566666665422111111111 33566789999999999999999 999999984
Q ss_pred --------------CceEEEEec--hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 274 --------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 274 --------------g~TVIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
++|+|+||| ..+. .||+|+ +|++|+|++.|++++++..
T Consensus 225 ~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~aD~i~-vl~~G~iv~~G~~~el~~~ 278 (306)
T 3nh6_A 225 NERAIQASLAKVCANRTTIVVAHRLSTVV-NADQIL-VIKDGCIVERGRHEALLSR 278 (306)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECCSHHHHH-TCSEEE-EEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEEcChHHHH-cCCEEE-EEECCEEEEECCHHHHHhc
Confidence 899999999 4554 499996 5999999999999998864
No 13
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=3e-42 Score=339.27 Aligned_cols=210 Identities=12% Similarity=0.152 Sum_probs=165.4
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
+|+++||+++|++ .++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++....
T Consensus 3 ~l~~~~l~~~y~~---~~v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~~~~~~ 71 (372)
T 1g29_1 3 GVRLVDVWKVFGE---VTA---VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE-----PSRGQIYIGDKLVADPE 71 (372)
T ss_dssp EEEEEEEEEEETT---EEE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEEEEGG
T ss_pred EEEEEeEEEEECC---EEE---EeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC-----CCccEEEECCEECcccc
Confidence 6999999999964 345 677999999999999999999999999999999999 99999999999874100
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
........++.++|++|+...+..+ ++.+|+.++.... ..+..+.++++.++++.++|.+
T Consensus 72 ~~~~~~~~~r~ig~v~Q~~~l~~~l----------tv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~--------- 131 (372)
T 1g29_1 72 KGIFVPPKDRDIAMVFQSYALYPHM----------TVYDNIAFPLKLR-KVPRQEIDQRVREVAELLGLTE--------- 131 (372)
T ss_dssp GTEECCGGGSSEEEECSCCCCCTTS----------CHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHTCGG---------
T ss_pred ccccCCHhHCCEEEEeCCCccCCCC----------CHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCch---------
Confidence 0000111123556666665544333 4555555554322 2334566778999999999987
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHH
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 285 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~ 285 (350)
+++++|.+||||||||++||||| |||+++||. |+|+|+||| +++
T Consensus 132 --------~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a 203 (372)
T 1g29_1 132 --------LLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEA 203 (372)
T ss_dssp --------GTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH
T ss_pred --------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHH
Confidence 56999999999999999999999 999999984 899999999 577
Q ss_pred HhcccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 018829 286 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
..+|||++ +|++|++++.|++++++..|...+.+.++
T Consensus 204 ~~~adri~-vl~~G~i~~~g~~~~l~~~p~~~~~~~~~ 240 (372)
T 1g29_1 204 MTMGDRIA-VMNRGVLQQVGSPDEVYDKPANTFVAGFI 240 (372)
T ss_dssp HHHCSEEE-EEETTEEEEEECHHHHHHSCSBHHHHHHS
T ss_pred HHhCCEEE-EEeCCEEEEeCCHHHHHhCcccHHHHHHh
Confidence 88999996 59999999999999999888765554443
No 14
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=2.6e-42 Score=319.56 Aligned_cols=203 Identities=18% Similarity=0.147 Sum_probs=153.2
Q ss_pred cEEEEEEEEEECCCc-eEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 74 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~-~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
+|+++||+++|+.+. ..++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~---L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~~~~ 72 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYA---LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK-----PTEGEVYIDNIKTNDL 72 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEE---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTTC
T ss_pred CEEEEEEEEEeCCCCcceee---EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCceEEEECCEEcccC
Confidence 589999999996432 2345 677999999999999999999999999999999999 9999999999998621
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhh--cCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI--RRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~--~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
...+.....++.++|++|+...+..+ ++.+|+.++.... ...+..+..+++.++++.+++.+.
T Consensus 73 ~~~~~~~~~~~~i~~v~Q~~~l~~~~----------tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----- 137 (235)
T 3tif_A 73 DDDELTKIRRDKIGFVFQQFNLIPLL----------TALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER----- 137 (235)
T ss_dssp CHHHHHHHHHHHEEEECTTCCCCTTS----------CHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGG-----
T ss_pred CHHHHHHHhhccEEEEecCCccCCCC----------cHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChh-----
Confidence 11111111122456777766544332 4445555443221 122345667788899999999862
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec-h
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-G 283 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH-~ 283 (350)
.+++++.+||||||||++||||| ||||++||+ |+|||+||| -
T Consensus 138 -----------~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~ 206 (235)
T 3tif_A 138 -----------FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI 206 (235)
T ss_dssp -----------GTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH
T ss_pred -----------hhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 24889999999999999999999 999999974 899999999 3
Q ss_pred HHHhcccEEEEEecCCeEeecCCccccc
Q 018829 284 DLLSLTDRARIRTYLGELLGIPPAKQIF 311 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G~iv~~g~~~~l~ 311 (350)
.+..+|||++ +|++|++++.++++++.
T Consensus 207 ~~~~~~d~i~-~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 207 NVARFGERII-YLKDGEVEREEKLRGFD 233 (235)
T ss_dssp HHHTTSSEEE-EEETTEEEEEEECC---
T ss_pred HHHHhCCEEE-EEECCEEEEEcChhhhc
Confidence 4568999996 59999999998877653
No 15
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.4e-42 Score=338.86 Aligned_cols=201 Identities=13% Similarity=0.181 Sum_probs=163.3
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
||+++||+++|++. + |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 1 ml~~~~l~~~y~~~--~-----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~~~g~~i~~-- 66 (348)
T 3d31_A 1 MIEIESLSRKWKNF--S-----LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV-----PDSGRILLDGKDVTD-- 66 (348)
T ss_dssp CEEEEEEEEECSSC--E-----EEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC-----CSEEEEEETTEECTT--
T ss_pred CEEEEEEEEEECCE--E-----EeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC-----CCCcEEEECCEECCC--
Confidence 58999999999642 3 778999999999999999999999999999999999 999999999999851
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
....++.++|++|+...+..+ ++.+|+.++..... .+.. +++.++++.++|.+
T Consensus 67 ----~~~~~r~ig~v~Q~~~l~~~l----------tv~enl~~~~~~~~-~~~~---~~v~~~l~~~~L~~--------- 119 (348)
T 3d31_A 67 ----LSPEKHDIAFVYQNYSLFPHM----------NVKKNLEFGMRMKK-IKDP---KRVLDTARDLKIEH--------- 119 (348)
T ss_dssp ----SCHHHHTCEEECTTCCCCTTS----------CHHHHHHHHHHHHC-CCCH---HHHHHHHHHTTCTT---------
T ss_pred ----CchhhCcEEEEecCcccCCCC----------CHHHHHHHHHHHcC-CCHH---HHHHHHHHHcCCch---------
Confidence 111123456666665554433 45555555443221 1222 67889999999988
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHH
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 285 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~ 285 (350)
+++++|.+||||||||++||||| |||+++||. |+|+|++|| +++
T Consensus 120 --------~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~ 191 (348)
T 3d31_A 120 --------LLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEA 191 (348)
T ss_dssp --------TTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred --------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 56999999999999999999999 999999974 899999999 577
Q ss_pred HhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 018829 286 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 324 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 324 (350)
..+|||++ +|++|++++.|++++++..|...+.+.++.
T Consensus 192 ~~~adri~-vl~~G~i~~~g~~~~~~~~p~~~~~a~~~g 229 (348)
T 3d31_A 192 RIMADRIA-VVMDGKLIQVGKPEEIFEKPVEGRVASFVG 229 (348)
T ss_dssp HHHCSEEE-EESSSCEEEEECHHHHHSSCCTTHHHHHHC
T ss_pred HHhCCEEE-EEECCEEEEECCHHHHHhCcccHHHHHhcC
Confidence 89999996 599999999999999999988777666554
No 16
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=4.7e-42 Score=321.72 Aligned_cols=196 Identities=13% Similarity=0.205 Sum_probs=153.2
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
+++|+++||+++|++ .++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 5 ~~~l~i~~l~~~y~~---~~v---l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~ 73 (257)
T 1g6h_A 5 MEILRTENIVKYFGE---FKA---LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK-----ADEGRVYFENKDITN 73 (257)
T ss_dssp CEEEEEEEEEEEETT---EEE---EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTT
T ss_pred CcEEEEeeeEEEECC---Eee---EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCC
Confidence 457999999999964 245 777999999999999999999999999999999999 999999999998751
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhh-hcC-----------CCcHHHHHHHHHHHHH
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV-IRR-----------SDSSSLRNRMRCKAHK 219 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~-~~~-----------~~~~~~~~~i~~~l~~ 219 (350)
. ......++.+++++|+...+.. .++.+|+.++... ... ......++++.++++.
T Consensus 74 ~---~~~~~~~~~i~~v~q~~~l~~~----------~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 140 (257)
T 1g6h_A 74 K---EPAELYHYGIVRTFQTPQPLKE----------MTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140 (257)
T ss_dssp C---CHHHHHHHTEEECCCCCGGGGG----------SBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHH
T ss_pred C---CHHHHHhCCEEEEccCCccCCC----------CcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHH
Confidence 1 0000111234555555433322 1556666654322 101 2234556778899999
Q ss_pred cCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------C
Q 018829 220 IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------D 274 (350)
Q Consensus 220 ~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g 274 (350)
+|+.+ .+++++.+||||||||++||||| ||||++||+ |
T Consensus 141 ~~l~~-----------------~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g 203 (257)
T 1g6h_A 141 LKLSH-----------------LYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKG 203 (257)
T ss_dssp TTCGG-----------------GTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred cCCch-----------------hhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCC
Confidence 99987 56899999999999999999999 999999974 8
Q ss_pred ceEEEEec--hHHHhcccEEEEEecCCeEeecCCccc
Q 018829 275 KPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQ 309 (350)
Q Consensus 275 ~TVIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~ 309 (350)
+|||++|| +.+..+||+++ +|++|++++.|++++
T Consensus 204 ~tvi~vtHd~~~~~~~~d~v~-~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 204 ITFLIIEHRLDIVLNYIDHLY-VMFNGQIIAEGRGEE 239 (257)
T ss_dssp CEEEEECSCCSTTGGGCSEEE-EEETTEEEEEEESHH
T ss_pred CEEEEEecCHHHHHHhCCEEE-EEECCEEEEEeCHHH
Confidence 99999999 57778999996 599999999998887
No 17
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=5.3e-41 Score=312.04 Aligned_cols=203 Identities=17% Similarity=0.210 Sum_probs=161.6
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
|++++||+++|+. + |+++||+|++ |+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 1 ml~~~~l~~~y~~---~-----l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~-- 64 (240)
T 2onk_A 1 MFLKVRAEKRLGN---F-----RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK-----PDRGEVRLNGADITP-- 64 (240)
T ss_dssp CCEEEEEEEEETT---E-----EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT--
T ss_pred CEEEEEEEEEeCC---E-----EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCc--
Confidence 4799999999963 4 7779999999 9999999999999999999999999 999999999998751
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
....++.++|++|+...+..+ ++.+|+.++..... ....++++.++++.+|+.+
T Consensus 65 ----~~~~~~~i~~v~q~~~l~~~l----------tv~enl~~~~~~~~---~~~~~~~~~~~l~~~~l~~--------- 118 (240)
T 2onk_A 65 ----LPPERRGIGFVPQDYALFPHL----------SVYRNIAYGLRNVE---RVERDRRVREMAEKLGIAH--------- 118 (240)
T ss_dssp ----SCTTTSCCBCCCSSCCCCTTS----------CHHHHHHTTCTTSC---HHHHHHHHHHHHHTTTCTT---------
T ss_pred ----CchhhCcEEEEcCCCccCCCC----------cHHHHHHHHHHHcC---CchHHHHHHHHHHHcCCHH---------
Confidence 111233567777765444332 44555555432111 1223567889999999987
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--hHH
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 285 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~~~ 285 (350)
++++++.+||||||||++||||| ||||++||+ |+|||++|| +.+
T Consensus 119 --------~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~ 190 (240)
T 2onk_A 119 --------LLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEA 190 (240)
T ss_dssp --------TTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHH
T ss_pred --------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 45899999999999999999999 999999974 799999999 567
Q ss_pred HhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHHH
Q 018829 286 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDM 328 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~~ 328 (350)
..+||+++ +|++|++++.|++++++..+ ..+++.++...+.
T Consensus 191 ~~~~d~i~-~l~~G~i~~~g~~~~~~~~~-~~~~~~~~~~~~~ 231 (240)
T 2onk_A 191 AMLADEVA-VMLNGRIVEKGKLKELFSAK-NGEVAEFLSARNL 231 (240)
T ss_dssp HHHCSEEE-EEETTEEEEEECHHHHHHSC-CSSHHHHGGGHHH
T ss_pred HHhCCEEE-EEECCEEEEECCHHHHHhCc-hHHHHHHhcCCcc
Confidence 78999996 59999999999999999887 7776665544333
No 18
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=6.8e-42 Score=322.56 Aligned_cols=195 Identities=13% Similarity=0.113 Sum_probs=155.3
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++|+++||+++|+. .++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 9 ~~~l~~~~l~~~~~~---~~v---L~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~~~ 77 (266)
T 4g1u_C 9 VALLEASHLHYHVQQ---QAL---INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS-----PSHGECHLLGQNLNS 77 (266)
T ss_dssp CCEEEEEEEEEEETT---EEE---EEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC-----CSSCEEEETTEETTT
T ss_pred cceEEEEeEEEEeCC---eeE---EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEECCc
Confidence 468999999999974 344 777999999999999999999999999999999999 999999999999862
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
.. .... ++.+++++|+...+.. .++.+|+.++.... .....++++.++++.+++.+
T Consensus 78 ~~---~~~~-~~~i~~v~q~~~~~~~----------~tv~e~l~~~~~~~---~~~~~~~~~~~~l~~~~l~~------- 133 (266)
T 4g1u_C 78 WQ---PKAL-ARTRAVMRQYSELAFP----------FSVSEVIQMGRAPY---GGSQDRQALQQVMAQTDCLA------- 133 (266)
T ss_dssp SC---HHHH-HHHEEEECSCCCCCSC----------CBHHHHHHGGGTTS---CSTTHHHHHHHHHHHTTCST-------
T ss_pred CC---HHHH-hheEEEEecCCccCCC----------CCHHHHHHhhhhhc---CcHHHHHHHHHHHHHcCChh-------
Confidence 11 0001 1234666665443222 24556666554322 22345677889999999987
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------------chhhcCCCC-----------------CceEEE
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------------NCPYLSFRD-----------------DKPVVV 279 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------------DEPts~Ld~-----------------g~TVIi 279 (350)
+.++++.+||||||||++||||| ||||++||+ ++|||+
T Consensus 134 ----------~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~ 203 (266)
T 4g1u_C 134 ----------LAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCC 203 (266)
T ss_dssp ----------TTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEE
T ss_pred ----------HhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 45889999999999999999997 999999984 579999
Q ss_pred Eec--hHHHhcccEEEEEecCCeEeecCCcccccc
Q 018829 280 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 280 iTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 312 (350)
||| +.+..+|||++ +|++|++++.|++++++.
T Consensus 204 vtHdl~~~~~~~d~v~-vl~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 204 VLHDLNLAALYADRIM-LLAQGKLVACGTPEEVLN 237 (266)
T ss_dssp ECSCHHHHHHHCSEEE-EEETTEEEEEECHHHHCC
T ss_pred EEcCHHHHHHhCCEEE-EEECCEEEEEcCHHHHhC
Confidence 999 57778999996 599999999999998865
No 19
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.2e-41 Score=317.53 Aligned_cols=197 Identities=14% Similarity=0.120 Sum_probs=157.2
Q ss_pred CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 71 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 71 ~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
.+++|+++||+++|+. .++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.
T Consensus 12 ~~~~l~i~~l~~~y~~---~~v---l~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~~~ 80 (256)
T 1vpl_A 12 HMGAVVVKDLRKRIGK---KEI---LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK-----PSSGIVTVFGKNVV 80 (256)
T ss_dssp --CCEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEETT
T ss_pred cCCeEEEEEEEEEECC---EEE---EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECC
Confidence 5789999999999964 244 777999999999999999999999999999999999 99999999999875
Q ss_pred CCccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccc
Q 018829 151 GTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 229 (350)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 229 (350)
.. ... .++.++|++|+...+..+ |.+|+.++. ... ..+..+.++++.++++.+++.+
T Consensus 81 ~~----~~~-~~~~i~~v~q~~~l~~~ltv~enl~~~~-----------~~~-~~~~~~~~~~~~~~l~~~gL~~----- 138 (256)
T 1vpl_A 81 EE----PHE-VRKLISYLPEEAGAYRNMQGIEYLRFVA-----------GFY-ASSSSEIEEMVERATEIAGLGE----- 138 (256)
T ss_dssp TC----HHH-HHTTEEEECTTCCCCTTSBHHHHHHHHH-----------HHH-CCCHHHHHHHHHHHHHHHCCGG-----
T ss_pred cc----HHH-HhhcEEEEcCCCCCCCCCcHHHHHHHHH-----------HHc-CCChHHHHHHHHHHHHHCCCch-----
Confidence 20 011 123567888876655443 555554421 111 1223344567889999999987
Q ss_pred cceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--
Q 018829 230 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-- 282 (350)
Q Consensus 230 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH-- 282 (350)
++++++.+||||||||++||||| ||||++||+ |+|||++||
T Consensus 139 ------------~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~ 206 (256)
T 1vpl_A 139 ------------KIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM 206 (256)
T ss_dssp ------------GGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred ------------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 45889999999999999999999 999999874 899999999
Q ss_pred hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 283 GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 283 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
+.+..+||+++ +|++|++++.|++++++..
T Consensus 207 ~~~~~~~d~v~-~l~~G~i~~~g~~~~~~~~ 236 (256)
T 1vpl_A 207 LEVEFLCDRIA-LIHNGTIVETGTVEELKER 236 (256)
T ss_dssp HHHTTTCSEEE-EEETTEEEEEEEHHHHHHH
T ss_pred HHHHHHCCEEE-EEECCEEEEecCHHHHHHh
Confidence 56778999996 5999999999999888654
No 20
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=4.8e-41 Score=308.84 Aligned_cols=193 Identities=18% Similarity=0.123 Sum_probs=148.6
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
++|+++|++++|+. .++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 3 ~~l~~~~l~~~y~~---~~~---l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~ 71 (224)
T 2pcj_A 3 EILRAENIKKVIRG---YEI---LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA-----PTEGKVFLEGKEVDYT 71 (224)
T ss_dssp EEEEEEEEEEEETT---EEE---EEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC-----CSEEEEEETTEECCSS
T ss_pred cEEEEEeEEEEECC---Eee---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECCCC
Confidence 47999999999964 244 777999999999999999999999999999999999 9999999999987521
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
...+.....++.++|++|+...+..+ ++.+|+.++.... ..+....++++.++++.+++.+
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~----------tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-------- 132 (224)
T 2pcj_A 72 NEKELSLLRNRKLGFVFQFHYLIPEL----------TALENVIVPMLKM-GKPKKEAKERGEYLLSELGLGD-------- 132 (224)
T ss_dssp CHHHHHHHHHHHEEEECSSCCCCTTS----------CHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHTTCTT--------
T ss_pred CHHHHHHHHhCcEEEEecCcccCCCC----------CHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCCch--------
Confidence 10000011113467777766544433 3334444332211 1223445677889999999987
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 285 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~ 285 (350)
.+++++.+||||||||++||||| ||||++||+ |+|||++|| +.+
T Consensus 133 ---------~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~ 203 (224)
T 2pcj_A 133 ---------KLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA 203 (224)
T ss_dssp ---------CTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred ---------hhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 45899999999999999999999 999999874 899999999 344
Q ss_pred HhcccEEEEEecCCeEeecCC
Q 018829 286 LSLTDRARIRTYLGELLGIPP 306 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~ 306 (350)
.+||+++ +|++|++++.|+
T Consensus 204 -~~~d~v~-~l~~G~i~~~g~ 222 (224)
T 2pcj_A 204 -ELTHRTL-EMKDGKVVGEIT 222 (224)
T ss_dssp -TTSSEEE-EEETTEEEEEEE
T ss_pred -HhCCEEE-EEECCEEEEEee
Confidence 8999996 599999998875
No 21
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.5e-41 Score=312.82 Aligned_cols=197 Identities=15% Similarity=0.222 Sum_probs=154.4
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++|+++||+++|+. . ++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 4 ~~~l~~~~l~~~y~~-~--~v---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~ 72 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGA-I--HA---IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR-----AQKGKIIFNGQDITN 72 (240)
T ss_dssp SEEEEEEEEEEEETT-E--EE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTT
T ss_pred CceEEEEeEEEEECC-e--eE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCC
Confidence 357999999999964 2 34 777999999999999999999999999999999999 999999999998751
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcC-CCCcccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG-CEPSVIRKV 230 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~g-l~~~~~~~~ 230 (350)
.. .....++.++|++|+...+..+ ++.+|+.++... .......++.+.++++.++ +.+
T Consensus 73 ~~---~~~~~~~~i~~v~q~~~l~~~l----------tv~enl~~~~~~--~~~~~~~~~~~~~~l~~~~~l~~------ 131 (240)
T 1ji0_A 73 KP---AHVINRMGIALVPEGRRIFPEL----------TVYENLMMGAYN--RKDKEGIKRDLEWIFSLFPRLKE------ 131 (240)
T ss_dssp CC---HHHHHHTTEEEECSSCCCCTTS----------BHHHHHHGGGTT--CCCSSHHHHHHHHHHHHCHHHHT------
T ss_pred CC---HHHHHhCCEEEEecCCccCCCC----------cHHHHHHHhhhc--CCCHHHHHHHHHHHHHHcccHhh------
Confidence 10 1111122467777766544332 444555443211 1123345567788899994 876
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--h
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 283 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~ 283 (350)
.+++++.+||||||||++||||| ||||++||+ |+|||++|| +
T Consensus 132 -----------~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~ 200 (240)
T 1ji0_A 132 -----------RLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL 200 (240)
T ss_dssp -----------TTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 45889999999999999999999 999999874 899999999 4
Q ss_pred HHHhcccEEEEEecCCeEeecCCcccccc
Q 018829 284 DLLSLTDRARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 312 (350)
.+.++||+++ +|++|++++.|++++++.
T Consensus 201 ~~~~~~d~v~-~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 201 GALKVAHYGY-VLETGQIVLEGKASELLD 228 (240)
T ss_dssp HHHHHCSEEE-EEETTEEEEEEEHHHHHT
T ss_pred HHHHhCCEEE-EEECCEEEEEcCHHHHhc
Confidence 6788999996 599999999999988865
No 22
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=5.9e-41 Score=315.87 Aligned_cols=198 Identities=14% Similarity=0.166 Sum_probs=154.9
Q ss_pred cEEEEEEEEEEC-CCc-eEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 74 LTDAKNKILSYT-PGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 74 ~l~i~~l~~~y~-~~~-~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
+|+++||+++|+ ++. ..++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~v---l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~~ 73 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKA---LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE-----PTSGDVLYDGERKKG 73 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEE---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECCH
T ss_pred EEEEEEEEEEecCCCccccce---eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEECCEECch
Confidence 689999999996 221 0234 777999999999999999999999999999999999 999999999998751
Q ss_pred CccccccccCCCccceeeccc-cccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCC--Ccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDT-RSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE--PSVIR 228 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~-~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~--~~~~~ 228 (350)
... ++.++|++|+. ..+. ..++.+|+.++.... .+....++++.++++.+|+. +
T Consensus 74 ------~~~-~~~i~~v~q~~~~~~~----------~~tv~enl~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~---- 130 (266)
T 2yz2_A 74 ------YEI-RRNIGIAFQYPEDQFF----------AERVFDEVAFAVKNF--YPDRDPVPLVKKAMEFVGLDFDS---- 130 (266)
T ss_dssp ------HHH-GGGEEEECSSGGGGCC----------CSSHHHHHHHTTTTT--CTTSCSHHHHHHHHHHTTCCHHH----
T ss_pred ------HHh-hhhEEEEeccchhhcC----------CCcHHHHHHHHHHhc--CCHHHHHHHHHHHHHHcCcCCcc----
Confidence 111 23456776653 1221 124556665543221 11223346788899999998 7
Q ss_pred ccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec-
Q 018829 229 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 282 (350)
Q Consensus 229 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH- 282 (350)
++++++.+||||||||++||||| ||||++||. |+|||++||
T Consensus 131 -------------~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd 197 (266)
T 2yz2_A 131 -------------FKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD 197 (266)
T ss_dssp -------------HTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred -------------cccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 56899999999999999999999 999999874 799999999
Q ss_pred -hHHHhcccEEEEEecCCeEeecCCccccccCCCC
Q 018829 283 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 316 (350)
Q Consensus 283 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~ 316 (350)
+.+..+||+++ +|++|++++.|++++++..+..
T Consensus 198 ~~~~~~~~d~v~-~l~~G~i~~~g~~~~~~~~~~~ 231 (266)
T 2yz2_A 198 IETVINHVDRVV-VLEKGKKVFDGTRMEFLEKYDP 231 (266)
T ss_dssp CTTTGGGCSEEE-EEETTEEEEEEEHHHHHHHSCC
T ss_pred HHHHHHhCCEEE-EEECCEEEEeCCHHHHhcCccc
Confidence 56778999996 5999999999999998876554
No 23
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.1e-40 Score=310.99 Aligned_cols=203 Identities=14% Similarity=0.142 Sum_probs=147.1
Q ss_pred cEEEEEEEEEEC-CCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 74 LTDAKNKILSYT-PGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 74 ~l~i~~l~~~y~-~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
-++++||+++|+ .+. ++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 7 ~~~~~~l~~~y~~~~~--~v---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~i~g~~~~~~ 76 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSP--VI---LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-----PENGQVLIDGHDLALA 76 (247)
T ss_dssp EEEEEEEEEESSTTSC--EE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEETTTS
T ss_pred ceeEEEEEEEeCCCCc--ce---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEhhhC
Confidence 489999999993 233 34 777999999999999999999999999999999999 9999999999998511
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
. ... .++.++|++|+...+ ..++.+|+.++.. ... .+++.++++.+++.+.+.+.++.
T Consensus 77 ~---~~~-~~~~i~~v~Q~~~l~-----------~~tv~enl~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~g 134 (247)
T 2ff7_A 77 D---PNW-LRRQVGVVLQDNVLL-----------NRSIIDNISLANP---GMS----VEKVIYAAKLAGAHDFISELREG 134 (247)
T ss_dssp C---HHH-HHHHEEEECSSCCCT-----------TSBHHHHHTTTCT---TCC----HHHHHHHHHHHTCHHHHHTSTTG
T ss_pred C---HHH-HHhcEEEEeCCCccc-----------cccHHHHHhccCC---CCC----HHHHHHHHHHhChHHHHHhCcch
Confidence 0 001 122456666655433 2255566655421 111 23456677777776521000000
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEech-HHHh
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTHG-DLLS 287 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH~-~~~~ 287 (350)
+ .+.+++++.+||||||||++||||| ||||++||. |+|||++||+ ....
T Consensus 135 l------~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~ 208 (247)
T 2ff7_A 135 Y------NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK 208 (247)
T ss_dssp G------GCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT
T ss_pred h------hhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence 0 0123456789999999999999999 999999874 8999999992 3334
Q ss_pred cccEEEEEecCCeEeecCCccccccCCC
Q 018829 288 LTDRARIRTYLGELLGIPPAKQIFDIPE 315 (350)
Q Consensus 288 ~aDri~v~l~~G~iv~~g~~~~l~~~~~ 315 (350)
.||+++ +|++|++++.|++++++..|.
T Consensus 209 ~~d~v~-~l~~G~i~~~g~~~~l~~~~~ 235 (247)
T 2ff7_A 209 NADRII-VMEKGKIVEQGKHKELLSEPE 235 (247)
T ss_dssp TSSEEE-EEETTEEEEEECHHHHHTSTT
T ss_pred hCCEEE-EEECCEEEEECCHHHHHhCCc
Confidence 699996 599999999999999987764
No 24
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=6.6e-40 Score=339.31 Aligned_cols=234 Identities=12% Similarity=0.157 Sum_probs=172.8
Q ss_pred hhHHHHHHHHHHHHHHHHHccchhcccC------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCC
Q 018829 43 SWDSLVDQRRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKG 116 (350)
Q Consensus 43 ~w~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnG 116 (350)
.|........+..|+.++++.+++.... ...+++++||+|+|+++. .++ |+|+||+|++||+++|+||||
T Consensus 304 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~-~~~---l~~i~l~i~~G~~~~ivG~sG 379 (582)
T 3b5x_A 304 VTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGKE-KPA---LSHVSFSIPQGKTVALVGRSG 379 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCCCeEEEEEEEEEcCCCC-ccc---cccceEEECCCCEEEEECCCC
Confidence 4555666667778999999876553211 134799999999997432 134 666999999999999999999
Q ss_pred ChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhh
Q 018829 117 SGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRH 196 (350)
Q Consensus 117 sGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~ 196 (350)
||||||+|+|+|+++ |++|+|.++|+++.. +...+.+...++|+|++.++..++.+|+.+
T Consensus 380 sGKSTll~~l~g~~~-----p~~G~i~~~g~~~~~---------------~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~ 439 (582)
T 3b5x_A 380 SGKSTIANLFTRFYD-----VDSGSICLDGHDVRD---------------YKLTNLRRHFALVSQNVHLFNDTIANNIAY 439 (582)
T ss_pred CCHHHHHHHHhcCCC-----CCCCEEEECCEEhhh---------------CCHHHHhcCeEEEcCCCccccccHHHHHhc
Confidence 999999999999999 999999999999851 111112223344455555555577778776
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chh
Q 018829 197 GELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCP 267 (350)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEP 267 (350)
+.. .. ..++++.++++.+++.+.+.+.++++.. ..++.+.+||||||||++||||| |||
T Consensus 440 ~~~--~~----~~~~~~~~~~~~~~l~~~~~~~p~g~~t------~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEp 507 (582)
T 3b5x_A 440 AAE--GE----YTREQIEQAARQAHAMEFIENMPQGLDT------VIGENGTSLSGGQRQRVAIARALLRDAPVLILDEA 507 (582)
T ss_pred cCC--CC----CCHHHHHHHHHHCCCHHHHHhCcccccc------hhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 531 01 1235577788888887643322333333 33456789999999999999999 999
Q ss_pred hcCCCC---------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 268 YLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 268 ts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
|++||+ |+|+|+||| -...+.||+|+ +|++|++++.|++++++..
T Consensus 508 ts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~-~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b5x_A 508 TSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEIL-VVDEGEIIERGRHADLLAQ 568 (582)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEE-EEECCEEEEECCHHHHHhC
Confidence 999874 899999999 23345799996 5999999999999999865
No 25
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=3.1e-40 Score=313.32 Aligned_cols=203 Identities=13% Similarity=0.098 Sum_probs=151.9
Q ss_pred CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 71 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 71 ~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
..++|+++||+++|+. . ++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.
T Consensus 18 ~~~~l~~~~l~~~y~~-~--~v---L~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~~~ 86 (279)
T 2ihy_A 18 SHMLIQLDQIGRMKQG-K--TI---LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP-----ATSGTVNLFGKMPG 86 (279)
T ss_dssp -CEEEEEEEEEEEETT-E--EE---EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTBCCC
T ss_pred CCceEEEEeEEEEECC-E--EE---EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCeEEEECCEEcc
Confidence 3457999999999964 2 34 777999999999999999999999999999999999 99999999998763
Q ss_pred CCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhh---cCCCcHHHHHHHHHHHHHcCCCCccc
Q 018829 151 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI---RRSDSSSLRNRMRCKAHKIGCEPSVI 227 (350)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~---~~~~~~~~~~~i~~~l~~~gl~~~~~ 227 (350)
... ..... .++.++|++|+...+.. ...++.+|+.++.... .........+++.++++.+|+.+
T Consensus 87 ~~~-~~~~~-~~~~i~~v~Q~~~~~~~--------~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~--- 153 (279)
T 2ihy_A 87 KVG-YSAET-VRQHIGFVSHSLLEKFQ--------EGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSA--- 153 (279)
T ss_dssp ----CCHHH-HHTTEEEECHHHHTTSC--------TTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGG---
T ss_pred ccc-CCHHH-HcCcEEEEEcCcccccC--------CCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChh---
Confidence 000 00001 12235555554332110 0015556665543210 01122445677889999999987
Q ss_pred cccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceE--EEE
Q 018829 228 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPV--VVV 280 (350)
Q Consensus 228 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TV--Iii 280 (350)
.+++++.+||||||||++||||| ||||++||. |+|| |+|
T Consensus 154 --------------~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iiv 219 (279)
T 2ihy_A 154 --------------KAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYV 219 (279)
T ss_dssp --------------GTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred --------------HhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEE
Confidence 45899999999999999999999 999999984 7899 999
Q ss_pred ec--hHHHhcccEEEEEecCCeEeecCCcccccc
Q 018829 281 TH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 281 TH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 312 (350)
|| +.+..+||+++ +|++|++++.|++++++.
T Consensus 220 tHd~~~~~~~~d~v~-~l~~G~i~~~g~~~~~~~ 252 (279)
T 2ihy_A 220 THFIEEITANFSKIL-LLKDGQSIQQGAVEDILT 252 (279)
T ss_dssp ESCGGGCCTTCCEEE-EEETTEEEEEEEHHHHCS
T ss_pred ecCHHHHHHhCCEEE-EEECCEEEEECCHHHHhc
Confidence 99 56678999996 599999999999988764
No 26
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=3.4e-40 Score=306.56 Aligned_cols=200 Identities=13% Similarity=0.144 Sum_probs=147.4
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
||+++||+++|+++.. + |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 1 ml~~~~l~~~y~~~~~--v---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~- 69 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQ--I---LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ-----PTAGEITIDGQPIDNI- 69 (243)
T ss_dssp CEEEEEEEECSSSSSC--S---EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC-----CSBSCEEETTEESTTT-
T ss_pred CEEEEEEEEEeCCCCc--e---EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEhhhC-
Confidence 5899999999942332 3 777999999999999999999999999999999999 9999999999998521
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
.. ...++.++|++|+...+.. ++.+|+.++... .. ..+++.++++.+++.+.+.+.++.+
T Consensus 70 --~~-~~~~~~i~~v~q~~~l~~~-----------tv~enl~~~~~~--~~----~~~~~~~~l~~~~l~~~~~~~~~gl 129 (243)
T 1mv5_A 70 --SL-ENWRSQIGFVSQDSAIMAG-----------TIRENLTYGLEG--DY----TDEDLWQVLDLAFARSFVENMPDQL 129 (243)
T ss_dssp --SC-SCCTTTCCEECCSSCCCCE-----------EHHHHTTSCTTS--CS----CHHHHHHHHHHHTCTTTTTSSTTGG
T ss_pred --CH-HHHHhhEEEEcCCCccccc-----------cHHHHHhhhccC--CC----CHHHHHHHHHHhChHHHHHhCccch
Confidence 11 1123356777776544422 455666554210 11 1245677888888876321100000
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEec--hHHHh
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLS 287 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH--~~~~~ 287 (350)
.+.+++++.+||||||||++||||| ||||++||+ |+|||++|| +.+ .
T Consensus 130 ------~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~-~ 202 (243)
T 1mv5_A 130 ------NTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTI-V 202 (243)
T ss_dssp ------GCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHH-H
T ss_pred ------hchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHH-H
Confidence 1123456789999999999999999 999999984 899999999 344 4
Q ss_pred cccEEEEEecCCeEeecCCcccccc
Q 018829 288 LTDRARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 288 ~aDri~v~l~~G~iv~~g~~~~l~~ 312 (350)
.||+++ +|++|++++.|++++++.
T Consensus 203 ~~d~v~-~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 203 DADKIY-FIEKGQITGSGKHNELVA 226 (243)
T ss_dssp HCSEEE-EEETTEECCCSCHHHHHH
T ss_pred hCCEEE-EEECCEEEEeCCHHHHHh
Confidence 699996 599999999999988765
No 27
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.2e-39 Score=304.20 Aligned_cols=195 Identities=12% Similarity=0.099 Sum_probs=144.6
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhc--cCCCCCCCcccEEEECCEeCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl--~~~~~~~p~~G~I~i~G~~i~ 150 (350)
++|+++||+++|+. . ++ |+++||+|++||+++|+||||||||||+|+|+|+ ++ |++|+|.++|+++.
T Consensus 2 ~~l~~~~l~~~y~~-~--~v---l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~-----p~~G~I~~~g~~~~ 70 (250)
T 2d2e_A 2 SQLEIRDLWASIDG-E--TI---LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT-----VERGEILLDGENIL 70 (250)
T ss_dssp CEEEEEEEEEEETT-E--EE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE-----EEEEEEEETTEECT
T ss_pred ceEEEEeEEEEECC-E--EE---EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----CCceEEEECCEECC
Confidence 37999999999964 2 34 7779999999999999999999999999999998 78 99999999999975
Q ss_pred CCccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCC-Ccccc
Q 018829 151 GTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE-PSVIR 228 (350)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~-~~~~~ 228 (350)
... .....+..+++++|+...+..+ +.+++.+..... ........+..+++.++++.+|+. +
T Consensus 71 ~~~---~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~gl~~~---- 134 (250)
T 2d2e_A 71 ELS---PDERARKGLFLAFQYPVEVPGVTIANFLRLALQAK---------LGREVGVAEFWTKVKKALELLDWDES---- 134 (250)
T ss_dssp TSC---HHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHH---------HTSCCCHHHHHHHHHHHHHHHTCCGG----
T ss_pred CCC---HHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhh---------ccccCCHHHHHHHHHHHHHHcCCChh----
Confidence 211 1111122456777776655544 555554322110 000012234456788899999995 5
Q ss_pred ccceeeeecchhhhhccCCCC-CCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec
Q 018829 229 KVNFVIFVVDGLAVLKSMEGD-SDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH 282 (350)
Q Consensus 229 ~~~~~~~vv~~~~~~~~~~~~-LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH 282 (350)
+.++++.+ ||||||||++||||| ||||++||. |+|||++||
T Consensus 135 -------------~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtH 201 (250)
T 2d2e_A 135 -------------YLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITH 201 (250)
T ss_dssp -------------GGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECS
T ss_pred -------------HhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 45889998 999999999999999 999999873 799999999
Q ss_pred --hHHHhc-ccEEEEEecCCeEeecCCcc
Q 018829 283 --GDLLSL-TDRARIRTYLGELLGIPPAK 308 (350)
Q Consensus 283 --~~~~~~-aDri~v~l~~G~iv~~g~~~ 308 (350)
+.+..+ ||+++ +|++|++++.|+++
T Consensus 202 d~~~~~~~~~d~v~-~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 202 YQRILNYIQPDKVH-VMMDGRVVATGGPE 229 (250)
T ss_dssp SSGGGGTSCCSEEE-EEETTEEEEEESHH
T ss_pred CHHHHHHhcCCEEE-EEECCEEEEEeCHH
Confidence 566677 59996 59999999998875
No 28
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.3e-40 Score=372.04 Aligned_cols=237 Identities=14% Similarity=0.125 Sum_probs=184.4
Q ss_pred hhHHHHHHHHHHHHHHHHHccchhcccC--------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcC
Q 018829 43 SWDSLVDQRRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGP 114 (350)
Q Consensus 43 ~w~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGp 114 (350)
.|........+..|+.++++.+++.... ..+.|+++||+|+|+.+...++ |+|+||+|++||.+|||||
T Consensus 1037 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~V---L~~isl~I~~Ge~vaIVG~ 1113 (1321)
T 4f4c_A 1037 YFPEYAKATFAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEI---LKGLSFSVEPGQTLALVGP 1113 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCS---EEEEEEEECTTCEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHhhCcccCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCcc---ccceeEEECCCCEEEEECC
Confidence 4566677777788999999887664322 2236999999999964332234 7779999999999999999
Q ss_pred CCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhh
Q 018829 115 KGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGV 194 (350)
Q Consensus 115 nGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v 194 (350)
||||||||+++|.|+|+ |++|+|.+||.|+. .+.+.+.|..+++|+|++.+|..++.+||
T Consensus 1114 SGsGKSTL~~lL~rl~~-----p~~G~I~iDG~di~---------------~i~~~~lR~~i~~V~Qdp~LF~gTIreNI 1173 (1321)
T 4f4c_A 1114 SGCGKSTVVALLERFYD-----TLGGEIFIDGSEIK---------------TLNPEHTRSQIAIVSQEPTLFDCSIAENI 1173 (1321)
T ss_dssp TTSSTTSHHHHHTTSSC-----CSSSEEEETTEETT---------------TBCHHHHHTTEEEECSSCCCCSEEHHHHH
T ss_pred CCChHHHHHHHHhcCcc-----CCCCEEEECCEEhh---------------hCCHHHHHhheEEECCCCEeeCccHHHHH
Confidence 99999999999999999 99999999999997 23333444444445555555555666676
Q ss_pred hhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------c
Q 018829 195 RHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------N 265 (350)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------D 265 (350)
.+|... .+..++++.++++.+++.+.+...++++...|++. ...||||||||+|||||| |
T Consensus 1174 ~~gld~-----~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~------G~~LSgGQrQriaiARAllr~~~ILiLD 1242 (1321)
T 4f4c_A 1174 IYGLDP-----SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDR------GTQLSGGQKQRIAIARALVRNPKILLLD 1242 (1321)
T ss_dssp SSSSCT-----TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTT------SCSSCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred hccCCC-----CCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCC------CcccCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 665421 12245678888999999876666666777766554 568999999999999999 9
Q ss_pred hhhcCCCC---------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccCC
Q 018829 266 CPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 314 (350)
Q Consensus 266 EPts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 314 (350)
||||+||. ++|+|+||| -.....||||+ ||++|+|+|.|+|+++++..
T Consensus 1243 EaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~-Vld~G~IvE~Gth~eLl~~~ 1306 (1321)
T 4f4c_A 1243 EATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIA-VVSNGTIIEKGTHTQLMSEK 1306 (1321)
T ss_dssp SCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEE-EESSSSEEEEECHHHHHHCC
T ss_pred CccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEE-EEECCEEEEECCHHHHHhCC
Confidence 99999984 899999999 34556799996 59999999999999999864
No 29
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=3.6e-40 Score=341.16 Aligned_cols=234 Identities=12% Similarity=0.129 Sum_probs=170.5
Q ss_pred hhHHHHHHHHHHHHHHHHHccchhcccC--------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcC
Q 018829 43 SWDSLVDQRRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGP 114 (350)
Q Consensus 43 ~w~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGp 114 (350)
.|........+..|+.++++.+++..+. ..+.++++||+|+|+++. .++ |+|+||+|++||++||+||
T Consensus 300 ~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~-~~~---l~~isl~i~~G~~~~ivG~ 375 (578)
T 4a82_A 300 SFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNE-API---LKDINLSIEKGETVAFVGM 375 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCSSCCCTTCCCCCCCSCCEEEEEEEECSCSSS-CCS---EEEEEEEECTTCEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccCCCCccccCCCCCeEEEEEEEEEcCCCC-Ccc---eeeeEEEECCCCEEEEECC
Confidence 4566667777788999999877654221 124599999999997533 134 7779999999999999999
Q ss_pred CCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhh
Q 018829 115 KGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGV 194 (350)
Q Consensus 115 nGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v 194 (350)
||||||||+++|+|+++ |++|+|.++|+++.. ..... .++.+++++|++..+.+ ++.+|+
T Consensus 376 sGsGKSTll~~l~g~~~-----p~~G~i~~~g~~~~~---~~~~~-~r~~i~~v~Q~~~l~~~-----------tv~eni 435 (578)
T 4a82_A 376 SGGGKSTLINLIPRFYD-----VTSGQILIDGHNIKD---FLTGS-LRNQIGLVQQDNILFSD-----------TVKENI 435 (578)
T ss_dssp TTSSHHHHHTTTTTSSC-----CSEEEEEETTEEGGG---SCHHH-HHHTEEEECSSCCCCSS-----------BHHHHH
T ss_pred CCChHHHHHHHHhcCCC-----CCCcEEEECCEEhhh---CCHHH-HhhheEEEeCCCccCcc-----------cHHHHH
Confidence 99999999999999999 999999999999861 00001 12345666666555443 455566
Q ss_pred hhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------c
Q 018829 195 RHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------N 265 (350)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------D 265 (350)
.++.. . ..++++.++++.+++.+.+...+++... ...+.+.+||||||||++||||| |
T Consensus 436 ~~~~~---~----~~~~~~~~~~~~~~~~~~~~~lp~g~~t------~~~~~g~~LSgGq~Qrv~lAral~~~p~illlD 502 (578)
T 4a82_A 436 LLGRP---T----ATDEEVVEAAKMANAHDFIMNLPQGYDT------EVGERGVKLSGGQKQRLSIARIFLNNPPILILD 502 (578)
T ss_dssp GGGCS---S----CCHHHHHHHHHHTTCHHHHHTSTTGGGC------BCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred hcCCC---C----CCHHHHHHHHHHhCcHHHHHhCcchhhh------hhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 55432 1 1124456667777765533222222222 23445678999999999999999 9
Q ss_pred hhhcCCCC---------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccCC
Q 018829 266 CPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 314 (350)
Q Consensus 266 EPts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 314 (350)
|||++||+ ++|+|+||| -...+.||||+ +|++|++++.|++++++..+
T Consensus 503 Epts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~-~l~~G~i~~~g~~~el~~~~ 566 (578)
T 4a82_A 503 EATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIV-VIENGHIVETGTHRELIAKQ 566 (578)
T ss_dssp STTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEE-EEETTEEEEEECHHHHHHTT
T ss_pred CccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEE-EEECCEEEEECCHHHHHhCC
Confidence 99999874 899999999 23345699996 59999999999999998753
No 30
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=3e-40 Score=312.00 Aligned_cols=198 Identities=10% Similarity=0.087 Sum_probs=146.6
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++|+++||+++|+.+...++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~v---l~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~i~~ 85 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQV---LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ-----PTGGKVLLDGEPLVQ 85 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCC---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEGGG
T ss_pred CceEEEEEEEEEeCCCCCcee---eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCCEEEECCEEccc
Confidence 357999999999964210123 777999999999999999999999999999999999 999999999998741
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHH-----HHHHHHHHHHHc--CCCC
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSS-----LRNRMRCKAHKI--GCEP 224 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~-----~~~~i~~~l~~~--gl~~ 224 (350)
..... .++.++|++|+...+.. ++.+|+.++.... ..... ....+.++++.+ |+..
T Consensus 86 ---~~~~~-~~~~i~~v~Q~~~l~~~-----------tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~gl~~ 148 (271)
T 2ixe_A 86 ---YDHHY-LHTQVAAVGQEPLLFGR-----------SFRENIAYGLTRT--PTMEEITAVAMESGAHDFISGFPQGYDT 148 (271)
T ss_dssp ---BCHHH-HHHHEEEECSSCCCCSS-----------BHHHHHHTTCSSC--CCHHHHHHHHHHHTCHHHHHHSTTGGGS
T ss_pred ---CCHHH-HhccEEEEecCCccccc-----------cHHHHHhhhcccC--ChHHHHHHHHHHHhHHHHHHhhhcchhh
Confidence 00101 12245677776544432 4445555443210 01011 122345567777 6665
Q ss_pred ccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEE
Q 018829 225 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVV 278 (350)
Q Consensus 225 ~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVI 278 (350)
.+++++.+||||||||++||||| ||||++||. |+|||
T Consensus 149 -----------------~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tvi 211 (271)
T 2ixe_A 149 -----------------EVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVL 211 (271)
T ss_dssp -----------------BCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEE
T ss_pred -----------------hhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEE
Confidence 34788999999999999999999 999999863 78999
Q ss_pred EEec--hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 279 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 279 iiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
+||| +.+ ..||+++ +|++|++++.|++++++..
T Consensus 212 ivtHd~~~~-~~~d~v~-~l~~G~i~~~g~~~~l~~~ 246 (271)
T 2ixe_A 212 LITQQLSLA-ERAHHIL-FLKEGSVCEQGTHLQLMER 246 (271)
T ss_dssp EECSCHHHH-TTCSEEE-EEETTEEEEEECHHHHHHH
T ss_pred EEeCCHHHH-HhCCEEE-EEECCEEEEECCHHHHHhC
Confidence 9999 344 4599996 5999999999999988754
No 31
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2e-40 Score=328.06 Aligned_cols=202 Identities=13% Similarity=0.125 Sum_probs=157.6
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.+.|+++||+|+|+.+. ..+ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++..
T Consensus 17 ~~~i~~~~l~~~y~~~~-~~~---L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~------~~G~I~i~G~~i~~ 86 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGG-NAI---LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN------TEGEIQIDGVSWDS 86 (390)
T ss_dssp SCCEEEEEEEEESSSSS-CCS---EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE------EEEEEEESSCBTTS
T ss_pred CCeEEEEEEEEEecCCC-eEE---eeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC------CCeEEEECCEECCc
Confidence 35799999999995332 234 777999999999999999999999999999999985 57999999998862
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
.. ... .++.+++++|+...+. .++.+|+.+... ..++++.++++.+++.+
T Consensus 87 ~~---~~~-~rr~ig~v~Q~~~lf~-----------~tv~enl~~~~~--------~~~~~v~~~l~~~~L~~------- 136 (390)
T 3gd7_A 87 IT---LEQ-WRKAFGVIPQKVFIFS-----------GTFRKNLDPNAA--------HSDQEIWKVADEVGLRS------- 136 (390)
T ss_dssp SC---HHH-HHHTEEEESCCCCCCS-----------EEHHHHHCTTCC--------SCHHHHHHHHHHTTCHH-------
T ss_pred CC---hHH-HhCCEEEEcCCcccCc-----------cCHHHHhhhccc--------cCHHHHHHHHHHhCCHH-------
Confidence 10 000 1234566666655443 344555542111 12356778899999987
Q ss_pred eeeeecchhhhhccCCCC-----------CCHHHHHHHHHHHHh---------chhhcCCCC---------------Cce
Q 018829 232 FVIFVVDGLAVLKSMEGD-----------SDVEKQYNQIVATTF---------NCPYLSFRD---------------DKP 276 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~-----------LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~T 276 (350)
+++++|.+ ||||||||++||||| ||||++||. ++|
T Consensus 137 ----------~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~t 206 (390)
T 3gd7_A 137 ----------VIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCT 206 (390)
T ss_dssp ----------HHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSC
T ss_pred ----------HHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCE
Confidence 56888887 999999999999999 999999873 899
Q ss_pred EEEEec-hHHHhcccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 018829 277 VVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 324 (350)
Q Consensus 277 VIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 324 (350)
+|++|| ..+...||||+ +|++|+|++.|++++++..|.+.+++.++.
T Consensus 207 vi~vtHd~e~~~~aDri~-vl~~G~i~~~g~~~el~~~p~~~~va~f~g 254 (390)
T 3gd7_A 207 VILCEARIEAMLECDQFL-VIEENKVRQYDSILELYHYPADRFVAGFIG 254 (390)
T ss_dssp EEEECSSSGGGTTCSEEE-EEETTEEEEESSHHHHHHCCSBHHHHHHSS
T ss_pred EEEEEcCHHHHHhCCEEE-EEECCEEEEECCHHHHHhCCCchHHHhhcC
Confidence 999999 45566799996 599999999999999999998777666654
No 32
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.5e-39 Score=337.49 Aligned_cols=241 Identities=12% Similarity=0.093 Sum_probs=166.4
Q ss_pred hHHHHHHHHHHHHHHHHHccchhcccC--------CCCc-EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcC
Q 018829 44 WDSLVDQRRRDAVFREVLQSYDQLRTR--------IGSL-TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGP 114 (350)
Q Consensus 44 w~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~~-l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGp 114 (350)
|........+..|+.++++.+++..+. .... ++++||+|+|+++...++ |+|+||+|++||++||+||
T Consensus 302 ~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~v---l~~isl~i~~G~~~~ivG~ 378 (595)
T 2yl4_A 302 YSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPI---FQDFSLSIPSGSVTALVGP 378 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCSSCSSCSBCCCTTTCCCCEEEEEEEEECSSCTTSEE---EEEEEEEECTTCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccCCCCCCCCCcCCCCCeEEEEEEEEEeCCCCCCcc---ccceEEEEcCCCEEEEECC
Confidence 445556666777999999876543211 1234 999999999964311134 7779999999999999999
Q ss_pred CCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhh
Q 018829 115 KGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGV 194 (350)
Q Consensus 115 nGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v 194 (350)
||||||||+++|+|+++ |++|+|.++|+++... .... .++.+++++|++..+. .++.+|+
T Consensus 379 sGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~i~~~---~~~~-~~~~i~~v~Q~~~l~~-----------~tv~eni 438 (595)
T 2yl4_A 379 SGSGKSTVLSLLLRLYD-----PASGTISLDGHDIRQL---NPVW-LRSKIGTVSQEPILFS-----------CSIAENI 438 (595)
T ss_dssp TTSSSTHHHHHHTTSSC-----CSEEEEEETTEETTTB---CHHH-HHHSEEEECSSCCCCS-----------SBHHHHH
T ss_pred CCCCHHHHHHHHhcCcC-----CCCcEEEECCEEhhhC---CHHH-HHhceEEEccCCcccC-----------CCHHHHH
Confidence 99999999999999999 9999999999998611 0101 1224566666655443 3455666
Q ss_pred hhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------c
Q 018829 195 RHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------N 265 (350)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------D 265 (350)
.++..... ...++++.++++.+++.+.+.+.+++... ...+.+.+||||||||++||||| |
T Consensus 439 ~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~l~~g~~~------~~~~~~~~LSgGq~qrv~iAral~~~p~illlD 508 (595)
T 2yl4_A 439 AYGADDPS----SVTAEEIQRVAEVANAVAFIRNFPQGFNT------VVGEKGVLLSGGQKQRIAIARALLKNPKILLLD 508 (595)
T ss_dssp HTTSSSTT----TSCHHHHHHHHHHTTCHHHHHTSSSGGGC------BCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred hhcCCCcc----ccCHHHHHHHHHHcCCHHHHHhCcccccc------cccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 55432110 11245677888888876532111112111 23445689999999999999999 9
Q ss_pred hhhcCCCC---------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccCCCCCC
Q 018829 266 CPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 318 (350)
Q Consensus 266 EPts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 318 (350)
|||++||. ++|+|+||| -...+.||+|+ +|++|++++.|++++++..+...+
T Consensus 509 Epts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~-~l~~G~i~~~g~~~~l~~~~~~~~ 576 (595)
T 2yl4_A 509 EATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVA-VLDQGKITEYGKHEELLSKPNGIY 576 (595)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEE-EEETTEEEEEECSCC------C--
T ss_pred CcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEE-EEECCEEEEECCHHHHHhCCChHH
Confidence 99999984 899999999 23335699996 599999999999999987544444
No 33
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=8.1e-40 Score=338.67 Aligned_cols=233 Identities=10% Similarity=0.087 Sum_probs=171.2
Q ss_pred hhHHHHHHHHHHHHHHHHHccchhcccC------CCCcEEEEEEEEEECCC-ceEEecCCCeeEeEEEeCCcEEEEEcCC
Q 018829 43 SWDSLVDQRRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPK 115 (350)
Q Consensus 43 ~w~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~l~i~~l~~~y~~~-~~~~~l~~L~~is~~I~~Ge~iaIvGpn 115 (350)
.|........+..|+.++++.+++..+. ...+++++||+|+|+++ .++ |+|+||+|++||++||+|||
T Consensus 304 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~-----l~~v~~~i~~G~~~~ivG~s 378 (582)
T 3b60_A 304 VNAQFQRGMAACQTLFAILDSEQEKDEGKRVIDRATGDLEFRNVTFTYPGREVPA-----LRNINLKIPAGKTVALVGRS 378 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCSCCCCCBCCSCCCCCEEEEEEEECSSSSSCCS-----EEEEEEEECTTCEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCcEEEEEEEEEcCCCCCcc-----ccceeEEEcCCCEEEEECCC
Confidence 4555666667778999999876553221 13479999999999743 333 77899999999999999999
Q ss_pred CChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhh
Q 018829 116 GSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVR 195 (350)
Q Consensus 116 GsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~ 195 (350)
|||||||+++|+|+++ |++|+|.++|+++... .... .++.+++++|++..+.+ ++.+|+.
T Consensus 379 GsGKSTLl~~l~g~~~-----p~~G~i~~~g~~~~~~---~~~~-~~~~i~~v~Q~~~l~~~-----------tv~eni~ 438 (582)
T 3b60_A 379 GSGKSTIASLITRFYD-----IDEGHILMDGHDLREY---TLAS-LRNQVALVSQNVHLFND-----------TVANNIA 438 (582)
T ss_dssp TSSHHHHHHHHTTTTC-----CSEEEEEETTEETTTB---CHHH-HHHTEEEECSSCCCCSS-----------BHHHHHH
T ss_pred CCCHHHHHHHHhhccC-----CCCCeEEECCEEcccc---CHHH-HHhhCeEEccCCcCCCC-----------CHHHHHh
Confidence 9999999999999999 9999999999998611 0001 12245666666554433 4555555
Q ss_pred hhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------ch
Q 018829 196 HGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NC 266 (350)
Q Consensus 196 ~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DE 266 (350)
++.. .. ..++++.++++.+++.+.+.+.++++.. ..++.+.+||||||||++||||| ||
T Consensus 439 ~~~~--~~----~~~~~~~~~l~~~~l~~~~~~~p~g~~~------~~~~~~~~LSgGq~qrl~iAral~~~p~illlDE 506 (582)
T 3b60_A 439 YART--EE----YSREQIEEAARMAYAMDFINKMDNGLDT------IIGENGVLLSGGQRQRIAIARALLRDSPILILDE 506 (582)
T ss_dssp TTTT--SC----CCHHHHHHHHHTTTCHHHHHHSTTGGGS------BCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEET
T ss_pred ccCC--CC----CCHHHHHHHHHHcCCHHHHHhccccccc------cccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 5431 01 1135577788888886643222223322 23456789999999999999999 99
Q ss_pred hhcCCCC---------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 267 PYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 267 Pts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
||++||. |+|+|+||| -...+.||+|+ +|++|++++.|++++++..
T Consensus 507 pts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~-~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b60_A 507 ATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIV-VVEDGIIVERGTHSELLAQ 568 (582)
T ss_dssp TTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEE-EEETTEEEEEECHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEE-EEECCEEEEecCHHHHHHc
Confidence 9999984 899999999 33445799996 5999999999999998764
No 34
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=5.2e-40 Score=340.63 Aligned_cols=232 Identities=16% Similarity=0.128 Sum_probs=166.5
Q ss_pred hHHHHHHHHHHHHHHHHHccchhcccC--------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCC
Q 018829 44 WDSLVDQRRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPK 115 (350)
Q Consensus 44 w~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpn 115 (350)
|......+.+..|+.++++.+++..+. ....++++||+|+|+++. .++ |+|+||+|++||+++|+|||
T Consensus 303 ~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~-~~~---l~~isl~i~~Ge~~~ivG~s 378 (587)
T 3qf4_A 303 LNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENT-DPV---LSGVNFSVKPGSLVAVLGET 378 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCSCCCCTTCBCCSCCCCCEEEEEEEECSSSSS-CCS---EEEEEEEECTTCEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccCCCCCccccCCCCCcEEEEEEEEEcCCCC-Ccc---eeceEEEEcCCCEEEEECCC
Confidence 455566667778999999876553221 224699999999996432 134 77799999999999999999
Q ss_pred CChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhh
Q 018829 116 GSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVR 195 (350)
Q Consensus 116 GsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~ 195 (350)
|||||||+++|+|+++ |++|+|.++|+++.. ..... .++++++++|++..+.+ ++.+|+.
T Consensus 379 GsGKSTll~~l~g~~~-----~~~G~i~i~g~~i~~---~~~~~-~r~~i~~v~Q~~~lf~~-----------tv~eni~ 438 (587)
T 3qf4_A 379 GSGKSTLMNLIPRLID-----PERGRVEVDELDVRT---VKLKD-LRGHISAVPQETVLFSG-----------TIKENLK 438 (587)
T ss_dssp SSSHHHHHHTTTTSSC-----CSEEEEEESSSBGGG---BCHHH-HHHHEEEECSSCCCCSE-----------EHHHHHT
T ss_pred CCCHHHHHHHHhCCcc-----CCCcEEEECCEEccc---CCHHH-HHhheEEECCCCcCcCc-----------cHHHHHh
Confidence 9999999999999999 999999999998851 00001 12345666666554433 4555655
Q ss_pred hhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------ch
Q 018829 196 HGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NC 266 (350)
Q Consensus 196 ~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DE 266 (350)
++... . .++++.++++.+++.+.+...++++.. ..++.+.+||||||||++||||| ||
T Consensus 439 ~~~~~---~----~~~~~~~~~~~~~~~~~i~~l~~g~~~------~~~~~~~~LSgGqrQrv~lARal~~~p~illlDE 505 (587)
T 3qf4_A 439 WGRED---A----TDDEIVEAAKIAQIHDFIISLPEGYDS------RVERGGRNFSGGQKQRLSIARALVKKPKVLILDD 505 (587)
T ss_dssp TTCSS---C----CHHHHHHHHHHTTCHHHHHTSSSGGGC------EECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEES
T ss_pred ccCCC---C----CHHHHHHHHHHhCcHHHHHhcccchhh------HhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 44321 1 123344455555554322111111111 34677889999999999999999 99
Q ss_pred hhcCCCC---------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 267 PYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 267 Pts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
||++||. |+|+|+||| -.....||||+ +|++|++++.|+++++++.
T Consensus 506 pts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~-vl~~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 506 CTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKIL-VLHEGKVAGFGTHKELLEH 567 (587)
T ss_dssp CCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEE-EEETTEEEEEECHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEE-EEECCEEEEECCHHHHHhC
Confidence 9999874 899999999 33446899996 5999999999999998764
No 35
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.1e-38 Score=300.53 Aligned_cols=205 Identities=13% Similarity=0.073 Sum_probs=151.0
Q ss_pred CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhc--cCCCCCCCcccEEEECCEe
Q 018829 71 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSV 148 (350)
Q Consensus 71 ~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl--~~~~~~~p~~G~I~i~G~~ 148 (350)
..++|+++||+++|++ .++ |+++||+|++||+++|+||||||||||+|+|+|+ ++ |++|+|.++|++
T Consensus 17 ~~~~l~~~~l~~~y~~---~~v---l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~-----p~~G~I~~~g~~ 85 (267)
T 2zu0_C 17 GSHMLSIKDLHVSVED---KAI---LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYE-----VTGGTVEFKGKD 85 (267)
T ss_dssp ---CEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCE-----EEEEEEEETTEE
T ss_pred CCceEEEEeEEEEECC---EEE---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----CCCeEEEECCEE
Confidence 3468999999999964 244 7779999999999999999999999999999999 57 899999999998
Q ss_pred CCCCccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccc
Q 018829 149 GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 227 (350)
Q Consensus 149 i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~ 227 (350)
+... ......+..+++++|+...+..+ +.+++.+....... .++. ...+..+..+++.++++.+|+...
T Consensus 86 i~~~---~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~l~~~gl~~~-- 155 (267)
T 2zu0_C 86 LLAL---SPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRS--YRGQ---ETLDRFDFQDLMEEKIALLKMPED-- 155 (267)
T ss_dssp GGGS---CHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHH--GGGC---CCCCHHHHHHHHHHHHHHTTCCTT--
T ss_pred CCcC---CHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhh--hhcc---ccCCHHHHHHHHHHHHHHcCCChh--
Confidence 7411 01111122467888887666554 56655432111000 0110 011233445678899999999642
Q ss_pred cccceeeeecchhhhhccCCC-CCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEe
Q 018829 228 RKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVT 281 (350)
Q Consensus 228 ~~~~~~~~vv~~~~~~~~~~~-~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiT 281 (350)
+.++++. +||||||||++||||| ||||++||. |+|||++|
T Consensus 156 --------------~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivt 221 (267)
T 2zu0_C 156 --------------LLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVT 221 (267)
T ss_dssp --------------TTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEEC
T ss_pred --------------HhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3477887 5999999999999999 999999873 78999999
Q ss_pred c--hHHHhc-ccEEEEEecCCeEeecCCccccc
Q 018829 282 H--GDLLSL-TDRARIRTYLGELLGIPPAKQIF 311 (350)
Q Consensus 282 H--~~~~~~-aDri~v~l~~G~iv~~g~~~~l~ 311 (350)
| +.+..+ ||+++ +|++|++++.|+++++.
T Consensus 222 Hd~~~~~~~~~d~v~-~l~~G~i~~~g~~~~~~ 253 (267)
T 2zu0_C 222 HYQRILDYIKPDYVH-VLYQGRIVKSGDFTLVK 253 (267)
T ss_dssp SSGGGGGTSCCSEEE-EEETTEEEEEECTTHHH
T ss_pred eCHHHHHhhcCCEEE-EEECCEEEEEcCHHHHh
Confidence 9 456665 89996 59999999999887664
No 36
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=4.6e-40 Score=341.64 Aligned_cols=231 Identities=15% Similarity=0.176 Sum_probs=167.6
Q ss_pred hhHHHHHHHHHHHHHHHHHccchhcccC-------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCC
Q 018829 43 SWDSLVDQRRRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPK 115 (350)
Q Consensus 43 ~w~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpn 115 (350)
.|........+..|+.++++.+++.... ..+.|+++||+|+|+++.+ + |+|+||+|++||++||+|||
T Consensus 316 ~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~--~---l~~isl~i~~G~~~~ivG~s 390 (598)
T 3qf4_B 316 QFNMIQMALASAERIFEILDLEEEKDDPDAVELREVRGEIEFKNVWFSYDKKKP--V---LKDITFHIKPGQKVALVGPT 390 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCCCCCSSCCCCCSCCCCEEEEEEECCSSSSSC--S---CCSEEEECCTTCEEEEECCT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCeEEEEEEEEECCCCCc--c---ccceEEEEcCCCEEEEECCC
Confidence 4566666777788999999877653221 1235999999999975433 4 66699999999999999999
Q ss_pred CChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhh
Q 018829 116 GSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVR 195 (350)
Q Consensus 116 GsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~ 195 (350)
|||||||+++|+|+++ |++|+|.++|+++... .... .++.+++++|++..+. .++.+|+.
T Consensus 391 GsGKSTll~~l~g~~~-----p~~G~i~~~g~~i~~~---~~~~-~r~~i~~v~Q~~~lf~-----------~tv~eni~ 450 (598)
T 3qf4_B 391 GSGKTTIVNLLMRFYD-----VDRGQILVDGIDIRKI---KRSS-LRSSIGIVLQDTILFS-----------TTVKENLK 450 (598)
T ss_dssp TSSTTHHHHHHTTSSC-----CSEEEEEETTEEGGGS---CHHH-HHHHEEEECTTCCCCS-----------SBHHHHHH
T ss_pred CCcHHHHHHHHhcCcC-----CCCeEEEECCEEhhhC---CHHH-HHhceEEEeCCCcccc-----------ccHHHHHh
Confidence 9999999999999999 9999999999998610 0001 1234556666555443 34556665
Q ss_pred hhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------ch
Q 018829 196 HGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NC 266 (350)
Q Consensus 196 ~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DE 266 (350)
++.. ..+ ++++.++++.+++.+.+...++++...+ .+.+.+||||||||++||||| ||
T Consensus 451 ~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~g~~t~~------~~~g~~LSgGq~Qrv~iAral~~~p~illlDE 517 (598)
T 3qf4_B 451 YGNP---GAT----DEEIKEAAKLTHSDHFIKHLPEGYETVL------TDNGEDLSQGQRQLLAITRAFLANPKILILDE 517 (598)
T ss_dssp SSST---TCC----TTHHHHHTTTTTCHHHHHTSTTGGGCBC------HHHHTTSCHHHHHHHHHHHHHHTCCSEEEECC
T ss_pred cCCC---CCC----HHHHHHHHHHhCCHHHHHhccccccchh------cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 5422 111 2335556666766553322222222222 233468999999999999999 99
Q ss_pred hhcCCCC---------------CceEEEEec--hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 267 PYLSFRD---------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 267 Pts~Ld~---------------g~TVIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
||++||. |+|+|+||| +.+ +.||+|+ +|++|++++.|++++++..
T Consensus 518 pts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~-~~~d~i~-~l~~G~i~~~g~~~~l~~~ 579 (598)
T 3qf4_B 518 ATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTI-KNADLII-VLRDGEIVEMGKHDELIQK 579 (598)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHH-HHCSEEE-EECSSSEEECSCHHHHHHT
T ss_pred CccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH-HcCCEEE-EEECCEEEEECCHHHHHhC
Confidence 9999984 899999999 444 4599996 5999999999999999875
No 37
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.1e-39 Score=364.45 Aligned_cols=233 Identities=13% Similarity=0.133 Sum_probs=181.1
Q ss_pred hHHHHHHHHHHHHHHHHHccchhcccC---------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcC
Q 018829 44 WDSLVDQRRRDAVFREVLQSYDQLRTR---------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGP 114 (350)
Q Consensus 44 w~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGp 114 (350)
+..+...+.+..|+.++|+.+++.... ....|+++||+|+|+.....++ |+|+||+|++|+.+|||||
T Consensus 376 ~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~v---L~~isl~i~~G~~vaivG~ 452 (1321)
T 4f4c_A 376 LAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPI---LRGMNLRVNAGQTVALVGS 452 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCS---EEEEEEEECTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCce---eeceEEeecCCcEEEEEec
Confidence 445566666777999999887654322 1235999999999964322234 7779999999999999999
Q ss_pred CCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhh
Q 018829 115 KGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGV 194 (350)
Q Consensus 115 nGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v 194 (350)
||||||||+++|.|+|+ |++|+|.+||+++. .+.....+..+++|.|++.++..++.+||
T Consensus 453 sGsGKSTll~ll~~~~~-----~~~G~I~idG~~i~---------------~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI 512 (1321)
T 4f4c_A 453 SGCGKSTIISLLLRYYD-----VLKGKITIDGVDVR---------------DINLEFLRKNVAVVSQEPALFNCTIEENI 512 (1321)
T ss_dssp SSSCHHHHHHHHTTSSC-----CSEEEEEETTEETT---------------TSCHHHHHHHEEEECSSCCCCSEEHHHHH
T ss_pred CCCcHHHHHHHhccccc-----cccCcccCCCccch---------------hccHHHHhhcccccCCcceeeCCchhHHH
Confidence 99999999999999999 99999999999987 22333344444455555555555666666
Q ss_pred hhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------c
Q 018829 195 RHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------N 265 (350)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------D 265 (350)
.+|.. ...++++.++++.+++++++..-++++...|++. ...||||||||++||||+ |
T Consensus 513 ~~g~~-------~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~------G~~LSGGQkQRiaiARAl~~~~~IliLD 579 (1321)
T 4f4c_A 513 SLGKE-------GITREEMVAACKMANAEKFIKTLPNGYNTLVGDR------GTQLSGGQKQRIAIARALVRNPKILLLD 579 (1321)
T ss_dssp HTTCT-------TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSS------SCCCCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred hhhcc-------cchHHHHHHHHHHccchhHHHcCCCCCccEecCC------CCCCCHHHHHHHHHHHHHccCCCEEEEe
Confidence 66543 1234567888888888776666666777765544 568999999999999999 9
Q ss_pred hhhcCCCC---------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 266 CPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 266 EPts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
||||+||. |+|+|+||| -...+.||+|+ +|++|+|++.|+|+++++.
T Consensus 580 E~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Ii-vl~~G~ive~Gth~eL~~~ 642 (1321)
T 4f4c_A 580 EATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLII-SCKNGQVVEVGDHRALMAQ 642 (1321)
T ss_dssp STTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEE-EEETTEEEEEECHHHHHTT
T ss_pred cccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEE-EeeCCeeeccCCHHHHHHh
Confidence 99999984 899999999 45667899995 5999999999999999875
No 38
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=7.7e-38 Score=292.79 Aligned_cols=184 Identities=14% Similarity=0.135 Sum_probs=145.9
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
++|+++||+++|+.+..+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+.
T Consensus 3 ~~l~i~~l~~~y~~~~~v-----l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~------- 65 (253)
T 2nq2_C 3 KALSVENLGFYYQAENFL-----FQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR-----PIQGKIEVY------- 65 (253)
T ss_dssp EEEEEEEEEEEETTTTEE-----EEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC-----CSEEEEEEC-------
T ss_pred ceEEEeeEEEEeCCCCeE-----EEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEEe-------
Confidence 379999999999722334 777999999999999999999999999999999999 999999821
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcC---CCcHHHHHHHHHHHHHcCCCCccccc
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR---SDSSSLRNRMRCKAHKIGCEPSVIRK 229 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~---~~~~~~~~~i~~~l~~~gl~~~~~~~ 229 (350)
+.++|++|+...+..+ ++.+|+.++...... ......++++.++++.+|+.+
T Consensus 66 ----------~~i~~v~q~~~~~~~~----------tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----- 120 (253)
T 2nq2_C 66 ----------QSIGFVPQFFSSPFAY----------SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTH----- 120 (253)
T ss_dssp ----------SCEEEECSCCCCSSCC----------BHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGG-----
T ss_pred ----------ccEEEEcCCCccCCCC----------CHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChH-----
Confidence 2457888876554332 333444443221100 122445677889999999987
Q ss_pred cceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec-
Q 018829 230 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 282 (350)
Q Consensus 230 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH- 282 (350)
++++++.+||||||||++||||| ||||++||. |+|||++||
T Consensus 121 ------------~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd 188 (253)
T 2nq2_C 121 ------------LAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQ 188 (253)
T ss_dssp ------------GTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESC
T ss_pred ------------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 45889999999999999999999 999999873 789999999
Q ss_pred -hHHHhcccEEEEEecCCeEeecCCcccccc
Q 018829 283 -GDLLSLTDRARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 283 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 312 (350)
+.+..+||+++ +|++|+ ++.|++++++.
T Consensus 189 ~~~~~~~~d~v~-~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 189 PNQVVAIANKTL-LLNKQN-FKFGETRNILT 217 (253)
T ss_dssp HHHHHHHCSEEE-EEETTE-EEEEEHHHHCC
T ss_pred HHHHHHhCCEEE-EEeCCe-EecCCHHHHhC
Confidence 56778999996 599999 99999888754
No 39
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=9.3e-39 Score=300.03 Aligned_cols=203 Identities=11% Similarity=0.141 Sum_probs=145.0
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
++|+++||+++|+.....++ |+++||+|++||+++|+||||||||||+|+|+|+++ | +|+|.++|+++..
T Consensus 16 ~~l~i~~l~~~y~~~~~~~v---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~-~G~I~i~g~~i~~- 85 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRT---LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-----A-EGDIKIGGKNVNK- 85 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCS---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----C-EEEEEETTEEGGG-
T ss_pred CeEEEEEEEEEeCCCCcCce---eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC-----C-CeEEEECCEEhhh-
Confidence 57999999999974311123 777999999999999999999999999999999998 8 7999999998741
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
..... .++.++|++|+...+.. ++.+|+.++.. ... .+++.++++.+++.+.+....+.
T Consensus 86 --~~~~~-~~~~i~~v~Q~~~l~~~-----------tv~enl~~~~~---~~~----~~~~~~~l~~~~l~~~~~~l~~~ 144 (260)
T 2ghi_A 86 --YNRNS-IRSIIGIVPQDTILFNE-----------TIKYNILYGKL---DAT----DEEVIKATKSAQLYDFIEALPKK 144 (260)
T ss_dssp --BCHHH-HHTTEEEECSSCCCCSE-----------EHHHHHHTTCT---TCC----HHHHHHHHHHTTCHHHHHTSTTG
T ss_pred --cCHHH-HhccEEEEcCCCccccc-----------CHHHHHhccCC---CCC----HHHHHHHHHHhCCHHHHHhcccc
Confidence 00111 12346777776654432 44455554321 111 23455667777765411000000
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEech-HHHh
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTHG-DLLS 287 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiTH~-~~~~ 287 (350)
-.+..++++.+||||||||++||||| ||||++||. ++|||++||+ ....
T Consensus 145 ------~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~ 218 (260)
T 2ghi_A 145 ------WDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS 218 (260)
T ss_dssp ------GGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST
T ss_pred ------ccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH
Confidence 00013467889999999999999999 999999874 7899999992 3335
Q ss_pred cccEEEEEecCCeEeecCCccccccC
Q 018829 288 LTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 288 ~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
.||+++ +|++|++++.|++++++..
T Consensus 219 ~~d~i~-~l~~G~i~~~g~~~~l~~~ 243 (260)
T 2ghi_A 219 SAESII-LLNKGKIVEKGTHKDLLKL 243 (260)
T ss_dssp TCSEEE-EEETTEEEEEECHHHHHHH
T ss_pred hCCEEE-EEECCEEEEECCHHHHHhc
Confidence 699996 5999999999999988754
No 40
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.7e-38 Score=296.70 Aligned_cols=185 Identities=13% Similarity=0.112 Sum_probs=146.1
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
+++++||+++ .+ |+++||+|++||+++|+||||||||||+|+|+|+++ |+ |+|.++|+++...
T Consensus 4 ~l~~~~l~~~-----~v-----l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-----p~-G~i~~~g~~~~~~- 66 (249)
T 2qi9_C 4 VMQLQDVAES-----TR-----LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-----GK-GSIQFAGQPLEAW- 66 (249)
T ss_dssp EEEEEEEEET-----TT-----EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CE-EEEEETTEEGGGS-
T ss_pred EEEEEceEEE-----EE-----EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CC-eEEEECCEECCcC-
Confidence 6999999986 13 888999999999999999999999999999999999 99 9999999987410
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccccee
Q 018829 154 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 233 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 233 (350)
.... .++.++|++|+...+..+ ++.+|+.++... .. . ++++.++++.+++.+
T Consensus 67 --~~~~-~~~~i~~v~q~~~~~~~~----------tv~e~l~~~~~~--~~--~--~~~~~~~l~~~~l~~--------- 118 (249)
T 2qi9_C 67 --SATK-LALHRAYLSQQQTPPFAT----------PVWHYLTLHQHD--KT--R--TELLNDVAGALALDD--------- 118 (249)
T ss_dssp --CHHH-HHHHEEEECSCCCCCTTC----------BHHHHHHTTCSS--TT--C--HHHHHHHHHHTTCGG---------
T ss_pred --CHHH-HhceEEEECCCCccCCCC----------cHHHHHHHhhcc--CC--c--HHHHHHHHHHcCChh---------
Confidence 0001 122356666665433221 455666554211 11 1 566888999999987
Q ss_pred eeecchhhhhccCCCCCCHHHHHHHHHHHHh----------------chhhcCCCC----------------CceEEEEe
Q 018829 234 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF----------------NCPYLSFRD----------------DKPVVVVT 281 (350)
Q Consensus 234 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL----------------DEPts~Ld~----------------g~TVIiiT 281 (350)
++++++.+||||||||++||||| ||||++||. |+|||++|
T Consensus 119 --------~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivt 190 (249)
T 2qi9_C 119 --------KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSS 190 (249)
T ss_dssp --------GTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred --------HhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 45889999999999999999998 699999874 78999999
Q ss_pred c--hHHHhcccEEEEEecCCeEeecCCcccccc
Q 018829 282 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 282 H--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 312 (350)
| +.+..+||+++ +|++|++++.|++++++.
T Consensus 191 Hd~~~~~~~~d~v~-~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 191 HDLNHTLRHAHRAW-LLKGGKMLASGRREEVLT 222 (249)
T ss_dssp SCHHHHHHHCSEEE-EEETTEEEEEEEHHHHSC
T ss_pred CCHHHHHHhCCEEE-EEECCEEEEeCCHHHHhc
Confidence 9 56678999996 599999999999988754
No 41
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.2e-37 Score=293.18 Aligned_cols=187 Identities=14% Similarity=0.100 Sum_probs=145.3
Q ss_pred cEEEEEEEEEECCC-ceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 74 LTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 74 ~l~i~~l~~~y~~~-~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
||+++|++++|+.+ ...++ |+++||+|+ ||+++|+||||||||||+|+|+|++ |++|+|.++|+++..
T Consensus 1 ml~~~~l~~~y~~~~~~~~i---l~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~------p~~G~I~~~g~~~~~- 69 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFS---LENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL------PYSGNIFINGMEVRK- 69 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEE---EEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS------CCEEEEEETTEEGGG-
T ss_pred CEEEEEEEEEeCCCCcccee---EEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC------CCCcEEEECCEECcc-
Confidence 58999999999631 00234 777999999 9999999999999999999999987 468999999998741
Q ss_pred ccccccccCCCccc-eeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCC-Ccccccc
Q 018829 153 YFLQEYTIPRGSNS-FSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE-PSVIRKV 230 (350)
Q Consensus 153 ~~~~~~~~~~~~~~-~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~-~~~~~~~ 230 (350)
. .. ++.++ |++|+... ...+.+|+.+ +.... . ..++++.++++.+++. +
T Consensus 70 --~---~~-~~~i~~~v~Q~~~l-~~tv~enl~~-----------~~~~~-~----~~~~~~~~~l~~~gl~~~------ 120 (263)
T 2pjz_A 70 --I---RN-YIRYSTNLPEAYEI-GVTVNDIVYL-----------YEELK-G----LDRDLFLEMLKALKLGEE------ 120 (263)
T ss_dssp --C---SC-CTTEEECCGGGSCT-TSBHHHHHHH-----------HHHHT-C----CCHHHHHHHHHHTTCCGG------
T ss_pred --h---HH-hhheEEEeCCCCcc-CCcHHHHHHH-----------hhhhc-c----hHHHHHHHHHHHcCCChh------
Confidence 1 11 33566 77766544 2235555443 22111 1 1235678889999998 7
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-------------CceEEEEec--hHHH
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLL 286 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-------------g~TVIiiTH--~~~~ 286 (350)
.+++++.+||||||||++||||| ||||++||. ..|||++|| +.+.
T Consensus 121 -----------~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~ 189 (263)
T 2pjz_A 121 -----------ILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLN 189 (263)
T ss_dssp -----------GGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGG
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHH
Confidence 45899999999999999999999 999999984 239999999 5677
Q ss_pred hccc-EEEEEecCCeEeecCCcccccc
Q 018829 287 SLTD-RARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 287 ~~aD-ri~v~l~~G~iv~~g~~~~l~~ 312 (350)
++|| +++ +|++|++++.|++++++.
T Consensus 190 ~~~d~~i~-~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 190 LYKEYKAY-FLVGNRLQGPISVSELLE 215 (263)
T ss_dssp GCTTSEEE-EEETTEEEEEEEHHHHHT
T ss_pred HhcCceEE-EEECCEEEEecCHHHHHh
Confidence 8999 996 599999999999988874
No 42
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=9.4e-38 Score=285.57 Aligned_cols=175 Identities=14% Similarity=0.217 Sum_probs=140.0
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
..+|+++||+++|+. .+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.
T Consensus 8 ~~~l~~~~ls~~y~~--~i-----l~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~~~- 74 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK--PV-----LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK-----PLKGEIIYNGVPIT- 74 (214)
T ss_dssp -CEEEEEEEEEESSS--EE-----EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEGG-
T ss_pred CceEEEEEEEEEeCC--eE-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEhh-
Confidence 468999999999964 44 788999999999999999999999999999999999 99999999998863
Q ss_pred CccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
. .++.++|++|+...+..+ |.+|+.++ ...... . .. ++++.++++.+++.+
T Consensus 75 -----~---~~~~i~~v~q~~~~~~~~tv~enl~~~-----------~~~~~~-~-~~-~~~~~~~l~~~gl~~------ 126 (214)
T 1sgw_A 75 -----K---VKGKIFFLPEEIIVPRKISVEDYLKAV-----------ASLYGV-K-VN-KNEIMDALESVEVLD------ 126 (214)
T ss_dssp -----G---GGGGEEEECSSCCCCTTSBHHHHHHHH-----------HHHTTC-C-CC-HHHHHHHHHHTTCCC------
T ss_pred -----h---hcCcEEEEeCCCcCCCCCCHHHHHHHH-----------HHhcCC-c-hH-HHHHHHHHHHcCCCc------
Confidence 1 133567888877655543 55555442 111111 1 12 456788999999987
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--h
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 283 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~ 283 (350)
. ++++.+||||||||++||||| ||||++||+ |+|||++|| +
T Consensus 127 -----------~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~ 194 (214)
T 1sgw_A 127 -----------L-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL 194 (214)
T ss_dssp -----------T-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC
T ss_pred -----------C-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 6 788999999999999999999 999999985 789999999 5
Q ss_pred HHHhcccEEEEEecCCeE
Q 018829 284 DLLSLTDRARIRTYLGEL 301 (350)
Q Consensus 284 ~~~~~aDri~v~l~~G~i 301 (350)
.+..+||++ + +..|+|
T Consensus 195 ~~~~~~d~v-~-~~~~~~ 210 (214)
T 1sgw_A 195 SYCDVNENL-H-KYSTKI 210 (214)
T ss_dssp TTSSEEEEG-G-GGBC--
T ss_pred HHHHhCCEE-E-EeCCcc
Confidence 778899999 4 777776
No 43
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1e-36 Score=280.89 Aligned_cols=188 Identities=15% Similarity=0.139 Sum_probs=135.4
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
.+|+++||+++|+.+. .++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.
T Consensus 5 ~~l~~~~l~~~y~~~~-~~i---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~----- 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEGG-TPV---LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-----PSEGKIKHSGR----- 70 (229)
T ss_dssp EEEEEEEEEECSSTTS-CCS---EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEECSC-----
T ss_pred ceEEEEEEEEEeCCCC-cee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCccEEEECCE-----
Confidence 4799999999996322 134 777999999999999999999999999999999999 99999999981
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
++|++|+...+...|.+ |+.++.. .. . ....++++.+++.+.+....
T Consensus 71 ------------i~~v~q~~~~~~~tv~e-----------nl~~~~~----~~-~---~~~~~~~~~~~l~~~~~~~~-- 117 (229)
T 2pze_A 71 ------------ISFCSQFSWIMPGTIKE-----------NIIFGVS----YD-E---YRYRSVIKACQLEEDISKFA-- 117 (229)
T ss_dssp ------------EEEECSSCCCCSBCHHH-----------HHHTTSC----CC-H---HHHHHHHHHTTCHHHHTTST--
T ss_pred ------------EEEEecCCcccCCCHHH-----------HhhccCC----cC-h---HHHHHHHHHhCcHHHHHhCc--
Confidence 36777776554333444 4443321 01 1 11223344444432110000
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hHH
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 285 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~~ 285 (350)
....+.+++.+.+||||||||++||||| ||||++||. ++|||++|| +.+
T Consensus 118 ----~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~ 193 (229)
T 2pze_A 118 ----EKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHL 193 (229)
T ss_dssp ----TGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHH
T ss_pred ----ccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHH
Confidence 0000022456789999999999999999 999999763 789999999 344
Q ss_pred HhcccEEEEEecCCeEeecCCccccccC
Q 018829 286 LSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 286 ~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
..||+++ +|++|++++.|++++++..
T Consensus 194 -~~~d~v~-~l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 194 -KKADKIL-ILHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp -HHCSEEE-EEETTEEEEEECHHHHHTC
T ss_pred -HhCCEEE-EEECCEEEEECCHHHHHhc
Confidence 4599996 5999999999999988764
No 44
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.9e-37 Score=344.27 Aligned_cols=234 Identities=11% Similarity=0.109 Sum_probs=166.7
Q ss_pred hhHHHHHHHHHHHHHHHHHccchhcccC---------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEc
Q 018829 43 SWDSLVDQRRRDAVFREVLQSYDQLRTR---------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIG 113 (350)
Q Consensus 43 ~w~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvG 113 (350)
.|..+...+.++.|+.++++.+++.... ..+.|+++||+|+|+++...++ |+|+||+|++||++||+|
T Consensus 347 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~v---L~~isl~i~~G~~~~ivG 423 (1284)
T 3g5u_A 347 NIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQI---LKGLNLKVKSGQTVALVG 423 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCS---EEEEEEEECTTCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcc---eecceEEEcCCCEEEEEC
Confidence 3555666677788999999877653221 1235999999999974322234 777999999999999999
Q ss_pred CCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhh
Q 018829 114 PKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEG 193 (350)
Q Consensus 114 pnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~ 193 (350)
|||||||||+++|+|+++ |++|+|.++|.++.. .... ..++.+++++|++..+. .++.+|
T Consensus 424 ~sGsGKSTl~~ll~g~~~-----~~~G~i~i~g~~i~~---~~~~-~~r~~i~~v~Q~~~l~~-----------~ti~eN 483 (1284)
T 3g5u_A 424 NSGCGKSTTVQLMQRLYD-----PLDGMVSIDGQDIRT---INVR-YLREIIGVVSQEPVLFA-----------TTIAEN 483 (1284)
T ss_dssp CSSSSHHHHHHHTTTSSC-----CSEEEEEETTEEGGG---SCHH-HHHHHEEEECSSCCCCS-----------SCHHHH
T ss_pred CCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEHHh---CCHH-HHHhheEEEcCCCccCC-----------ccHHHH
Confidence 999999999999999999 999999999999861 0000 11223555555554443 455556
Q ss_pred hhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------
Q 018829 194 VRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF--------- 264 (350)
Q Consensus 194 v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL--------- 264 (350)
+.++... .. .+++.++++.+++.+.+....+++.. ...+.+.+||||||||++|||||
T Consensus 484 i~~g~~~---~~----~~~~~~~~~~~~~~~~i~~l~~g~~t------~~~~~g~~LSgGq~QriaiARal~~~p~iliL 550 (1284)
T 3g5u_A 484 IRYGRED---VT----MDEIEKAVKEANAYDFIMKLPHQFDT------LVGERGAQLSGGQKQRIAIARALVRNPKILLL 550 (1284)
T ss_dssp HHHHCSS---CC----HHHHHHHHHHTTCHHHHHHSTTGGGC------CCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred HhcCCCC---CC----HHHHHHHHHHhCcHHHHHhccccccc------cccCCCCccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 6554321 11 23344555555554322111122221 23566789999999999999999
Q ss_pred chhhcCCCC---------------CceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 265 NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 265 DEPts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
||||++||. |+|+|+||| -.....||+|+ +|++|++++.|++++++..
T Consensus 551 DEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~-vl~~G~i~~~g~~~~l~~~ 614 (1284)
T 3g5u_A 551 DEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIA-GFDGGVIVEQGNHDELMRE 614 (1284)
T ss_dssp ESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEE-ECSSSCCCCEECHHHHHHT
T ss_pred ECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEE-EEECCEEEEECCHHHHHhC
Confidence 999999973 899999999 33345599996 5999999999999998765
No 45
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=281.58 Aligned_cols=185 Identities=14% Similarity=0.175 Sum_probs=133.9
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
.+|+++||+++|+.+. .++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.
T Consensus 2 ~~l~~~~l~~~y~~~~-~~v---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~----- 67 (237)
T 2cbz_A 2 NSITVRNATFTWARSD-PPT---LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD-----KVEGHVAIKGS----- 67 (237)
T ss_dssp CCEEEEEEEEESCTTS-CCS---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE-----EEEEEEEECSC-----
T ss_pred CeEEEEEEEEEeCCCC-Cce---eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCE-----
Confidence 3699999999996321 133 777999999999999999999999999999999999 99999999982
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHH---HHHHcCCCCccccc
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRC---KAHKIGCEPSVIRK 229 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~---~l~~~gl~~~~~~~ 229 (350)
++|++|+...+...|. +|+.++... ..... +++.+ +++.+++.+.-
T Consensus 68 ------------i~~v~Q~~~~~~~tv~-----------enl~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~--- 116 (237)
T 2cbz_A 68 ------------VAYVPQQAWIQNDSLR-----------ENILFGCQL----EEPYY-RSVIQACALLPDLEILPSG--- 116 (237)
T ss_dssp ------------EEEECSSCCCCSEEHH-----------HHHHTTSCC----CTTHH-HHHHHHTTCHHHHTTSTTG---
T ss_pred ------------EEEEcCCCcCCCcCHH-----------HHhhCcccc----CHHHH-HHHHHHHhhHHHHHhcccc---
Confidence 3677777543322244 444443211 11111 11111 12233332100
Q ss_pred cceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC------------------CceEEEEec
Q 018829 230 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD------------------DKPVVVVTH 282 (350)
Q Consensus 230 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~------------------g~TVIiiTH 282 (350)
..+.+++++.+||||||||++||||| ||||++||+ ++|||++||
T Consensus 117 ---------~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH 187 (237)
T 2cbz_A 117 ---------DRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTH 187 (237)
T ss_dssp ---------GGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECS
T ss_pred ---------ccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEec
Confidence 00124678999999999999999999 999999642 689999999
Q ss_pred --hHHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 283 --GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 283 --~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
+.+ ..||+++ +|++|++++.|++++++..
T Consensus 188 ~~~~~-~~~d~v~-~l~~G~i~~~g~~~~~~~~ 218 (237)
T 2cbz_A 188 SMSYL-PQVDVII-VMSGGKISEMGSYQELLAR 218 (237)
T ss_dssp CSTTG-GGSSEEE-EEETTEEEEEECHHHHHHH
T ss_pred ChHHH-HhCCEEE-EEeCCEEEEeCCHHHHhhc
Confidence 444 5799996 5999999999999888653
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=4.1e-36 Score=335.00 Aligned_cols=232 Identities=11% Similarity=0.094 Sum_probs=167.4
Q ss_pred HHHHHHHHHHHHHHccchhcccC---------CCCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCCh
Q 018829 48 VDQRRRDAVFREVLQSYDQLRTR---------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSG 118 (350)
Q Consensus 48 ~~~~~~~~~~~~~l~~~~~~~~~---------~~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsG 118 (350)
.....+..|+.++++.+++.... ..+.++++||+|+|+.....++ |+|+||+|++||++||+||||||
T Consensus 995 ~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~---l~~vsl~i~~Ge~v~ivG~sGsG 1071 (1284)
T 3g5u_A 995 AKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPV---LQGLSLEVKKGQTLALVGSSGCG 1071 (1284)
T ss_dssp THHHHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCS---BSSCCEEECSSSEEEEECSSSTT
T ss_pred HHHHHHHHHHHHHHcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCee---ecceeEEEcCCCEEEEECCCCCC
Confidence 44556777999999876653221 1246999999999974322245 56699999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhh
Q 018829 119 KSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE 198 (350)
Q Consensus 119 KSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~ 198 (350)
||||+++|.|+++ |++|+|.++|+++... .. ...++++++++|++..+.+ ++.+|+.++.
T Consensus 1072 KSTl~~~l~g~~~-----p~~G~I~i~g~~i~~~---~~-~~~r~~i~~v~Q~~~l~~~-----------ti~eNi~~~~ 1131 (1284)
T 3g5u_A 1072 KSTVVQLLERFYD-----PMAGSVFLDGKEIKQL---NV-QWLRAQLGIVSQEPILFDC-----------SIAENIAYGD 1131 (1284)
T ss_dssp HHHHHHHHTTSSC-----CSEEEEESSSSCTTSS---CH-HHHTTSCEEEESSCCCCSS-----------BHHHHHTCCC
T ss_pred HHHHHHHHhcCcC-----CCCCEEEECCEEcccC---CH-HHHHhceEEECCCCccccc-----------cHHHHHhccC
Confidence 9999999999999 9999999999998621 11 1123456777777655443 4555555543
Q ss_pred hhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhc
Q 018829 199 LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYL 269 (350)
Q Consensus 199 ~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts 269 (350)
... ....+++.++++.+++.+.+.+.++++...| .+.+.+||||||||++||||| ||||+
T Consensus 1132 ~~~-----~~~~~~i~~~~~~~~~~~~i~~l~~gldt~v------ge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs 1200 (1284)
T 3g5u_A 1132 NSR-----VVSYEEIVRAAKEANIHQFIDSLPDKYNTRV------GDKGTQLSGGQKQRIAIARALVRQPHILLLDEATS 1200 (1284)
T ss_dssp SSC-----CCCHHHHHHHHHHHTCHHHHSSTTTGGGCBC------STTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSS
T ss_pred CCC-----CCCHHHHHHHHHHhCcHHHHHhCcccccccc------CCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 211 1112345556666666553333333333322 345678999999999999999 99999
Q ss_pred CCCC---------------CceEEEEech-HHHhcccEEEEEecCCeEeecCCccccccCC
Q 018829 270 SFRD---------------DKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 314 (350)
Q Consensus 270 ~Ld~---------------g~TVIiiTH~-~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 314 (350)
+||. |+|||+|||+ .....||||+ +|++|++++.|+|+++++..
T Consensus 1201 ~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~-vl~~G~i~~~g~~~~l~~~~ 1260 (1284)
T 3g5u_A 1201 ALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIV-VIQNGKVKEHGTHQQLLAQK 1260 (1284)
T ss_dssp SCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEE-EEETBEEEEEECHHHHHHSC
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEE-EEECCEEEEECCHHHHHhCC
Confidence 9873 8999999992 3345699996 59999999999999998753
No 47
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=9.3e-35 Score=277.12 Aligned_cols=183 Identities=16% Similarity=0.145 Sum_probs=119.6
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++++++||++.|. ++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|
T Consensus 38 ~~~l~~~~l~~~~~-----~v---l~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g----- 99 (290)
T 2bbs_A 38 DDSLSFSNFSLLGT-----PV---LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-----PSEGKIKHSG----- 99 (290)
T ss_dssp ------------CC-----CS---EEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC-----EEEEEEECCS-----
T ss_pred CceEEEEEEEEcCc-----eE---EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECC-----
Confidence 35799999998642 23 777999999999999999999999999999999999 9999999987
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
.++|++|+...+...|.+| +. +.. .. . ..+.++++.+++.+.+.....
T Consensus 100 ------------~i~~v~Q~~~l~~~tv~en-----------l~-~~~----~~-~---~~~~~~~~~~~l~~~l~~~~~ 147 (290)
T 2bbs_A 100 ------------RISFCSQNSWIMPGTIKEN-----------II-GVS----YD-E---YRYRSVIKACQLEEDISKFAE 147 (290)
T ss_dssp ------------CEEEECSSCCCCSSBHHHH-----------HH-TTC----CC-H---HHHHHHHHHTTCHHHHHTSTT
T ss_pred ------------EEEEEeCCCccCcccHHHH-----------hh-Ccc----cc-h---HHHHHHHHHhChHHHHHhccc
Confidence 1367777765543334444 33 111 01 1 112333444454331100000
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEEEec--hH
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 284 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIiiTH--~~ 284 (350)
...+.+++.+.+||||||||++||||| ||||++||. ++|||++|| +.
T Consensus 148 ------~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~ 221 (290)
T 2bbs_A 148 ------KDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEH 221 (290)
T ss_dssp ------GGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHH
T ss_pred ------cccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHH
Confidence 000012445689999999999999999 999999763 789999999 44
Q ss_pred HHhcccEEEEEecCCeEeecCCcccccc
Q 018829 285 LLSLTDRARIRTYLGELLGIPPAKQIFD 312 (350)
Q Consensus 285 ~~~~aDri~v~l~~G~iv~~g~~~~l~~ 312 (350)
+ ..||+++ +|++|++++.|++++++.
T Consensus 222 ~-~~~d~i~-~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 222 L-KKADKIL-ILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp H-HHSSEEE-EEETTEEEEEECHHHHHH
T ss_pred H-HcCCEEE-EEECCeEEEeCCHHHHhh
Confidence 4 4699996 599999999999988864
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=7.3e-31 Score=272.91 Aligned_cols=178 Identities=15% Similarity=0.127 Sum_probs=140.0
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++++++|+++.|++- . |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+.
T Consensus 355 ~~~l~~~~l~~~~~~~--~-----l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~------ 416 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGSF--K-----LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE-----PTEGKVEWD------ 416 (607)
T ss_dssp CEEEEECCEEEECSSC--E-----EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-----CSBSCCCCC------
T ss_pred ceEEEEeceEEEecce--E-----EEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEEe------
Confidence 3579999999999642 3 777999999999999999999999999999999999 999999761
Q ss_pred CccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
..++|++|+......+ |.+++...... . ....+.+.++++.+++.+
T Consensus 417 -----------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~---------~-------~~~~~~~~~~l~~~~l~~------ 463 (607)
T 3bk7_A 417 -----------LTVAYKPQYIKAEYEGTVYELLSKIDSS---------K-------LNSNFYKTELLKPLGIID------ 463 (607)
T ss_dssp -----------CCEEEECSSCCCCCSSBHHHHHHHHHHH---------H-------HHCHHHHHHTHHHHTCTT------
T ss_pred -----------eEEEEEecCccCCCCCcHHHHHHhhhcc---------C-------CCHHHHHHHHHHHcCCch------
Confidence 1357788876443222 44333221000 0 011345778899999987
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 282 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH-- 282 (350)
.+++++.+||||||||++||||| ||||++||. |+|||+|||
T Consensus 464 -----------~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~ 532 (607)
T 3bk7_A 464 -----------LYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 532 (607)
T ss_dssp -----------TTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 45899999999999999999999 999999873 789999999
Q ss_pred hHHHhcccEEEEEecC--CeEeecCCcccccc
Q 018829 283 GDLLSLTDRARIRTYL--GELLGIPPAKQIFD 312 (350)
Q Consensus 283 ~~~~~~aDri~v~l~~--G~iv~~g~~~~l~~ 312 (350)
+.+..+|||++ +|++ |++...|++++++.
T Consensus 533 ~~~~~~adrv~-vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 533 LMIDYVSDRLI-VFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp HHHHHHCSEEE-EEEEETTTEEEECCCEEHHH
T ss_pred HHHHHhCCEEE-EEcCCcceEEecCCHHHHHh
Confidence 57788999996 5885 78888899887754
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.97 E-value=7.1e-31 Score=269.63 Aligned_cols=178 Identities=13% Similarity=0.145 Sum_probs=138.8
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++++++|+++.|++ .. |+++||+|++||++||+||||||||||+|+|+|+++ |++|+|.+.
T Consensus 285 ~~~l~~~~l~~~~~~--~~-----l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~i~~~------ 346 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGS--FR-----LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE-----PTEGKIEWD------ 346 (538)
T ss_dssp CEEEEECCEEEEETT--EE-----EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-----CSBCCCCCC------
T ss_pred CeEEEEeeEEEEECC--EE-----EEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEEC------
Confidence 457999999999964 23 677999999999999999999999999999999999 999999751
Q ss_pred CccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
..++|++|+....... |.+++..... . . . ...+.+.++++.+++.+
T Consensus 347 -----------~~i~~v~Q~~~~~~~~tv~~~~~~~~~----------~-~-~----~~~~~~~~~l~~~~l~~------ 393 (538)
T 1yqt_A 347 -----------LTVAYKPQYIKADYEGTVYELLSKIDA----------S-K-L----NSNFYKTELLKPLGIID------ 393 (538)
T ss_dssp -----------CCEEEECSSCCCCCSSBHHHHHHHHHH----------H-H-H----TCHHHHHHTTTTTTCGG------
T ss_pred -----------ceEEEEecCCcCCCCCcHHHHHHhhhc----------c-C-C----CHHHHHHHHHHHcCChh------
Confidence 1346778776443222 4332221100 0 0 0 01245677888999976
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 282 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH-- 282 (350)
..++++.+||||||||++||||| ||||++||. |.|||+|||
T Consensus 394 -----------~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~ 462 (538)
T 1yqt_A 394 -----------LYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 462 (538)
T ss_dssp -----------GTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred -----------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 45899999999999999999999 999999873 889999999
Q ss_pred hHHHhcccEEEEEecC--CeEeecCCcccccc
Q 018829 283 GDLLSLTDRARIRTYL--GELLGIPPAKQIFD 312 (350)
Q Consensus 283 ~~~~~~aDri~v~l~~--G~iv~~g~~~~l~~ 312 (350)
+.+..+|||++ +|++ |+++..|++++++.
T Consensus 463 ~~~~~~~drv~-vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 463 LMIDYVSDRLM-VFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp HHHHHHCSEEE-EEEEETTTEEEECCCEEHHH
T ss_pred HHHHHhCCEEE-EEeCCcceEeecCCHHHHHh
Confidence 57888999996 5885 78888899887754
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=5.2e-31 Score=270.56 Aligned_cols=176 Identities=10% Similarity=0.054 Sum_probs=132.9
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++++++++++.|++ .. |+.+||+|++||++||+||||||||||+|+|+|+++ |++|+|.+++..+
T Consensus 267 ~~~l~~~~l~~~~~~--~~-----l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~~i-- 332 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGD--FQ-----LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT-----ADEGSVTPEKQIL-- 332 (538)
T ss_dssp CEEEEECCEEEEETT--EE-----EEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSBCCEESSCCCE--
T ss_pred cceEEEcceEEEECC--EE-----EEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCeee--
Confidence 357899999999964 23 666899999999999999999999999999999999 9999999876443
Q ss_pred CccccccccCCCccceeecccccc-ccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 152 TYFLQEYTIPRGSNSFSLYDTRSL-SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~~-~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
++.+|+.... ...|.|++... ... ... .....+.++++.+++.+
T Consensus 333 --------------~~~~q~~~~~~~~tv~~~l~~~-----------~~~--~~~--~~~~~~~~~l~~~~l~~------ 377 (538)
T 3ozx_A 333 --------------SYKPQRIFPNYDGTVQQYLENA-----------SKD--ALS--TSSWFFEEVTKRLNLHR------ 377 (538)
T ss_dssp --------------EEECSSCCCCCSSBHHHHHHHH-----------CSS--TTC--TTSHHHHHTTTTTTGGG------
T ss_pred --------------EeechhcccccCCCHHHHHHHh-----------hhh--ccc--hhHHHHHHHHHHcCCHH------
Confidence 4555554322 22355544321 000 000 11234667888899887
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 282 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH-- 282 (350)
.+++++.+||||||||++||||| ||||++||. |+|||+|||
T Consensus 378 -----------~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl 446 (538)
T 3ozx_A 378 -----------LLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL 446 (538)
T ss_dssp -----------CTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 45899999999999999999999 999999873 789999999
Q ss_pred hHHHhcccEEEEEecC--CeEeecCCcc
Q 018829 283 GDLLSLTDRARIRTYL--GELLGIPPAK 308 (350)
Q Consensus 283 ~~~~~~aDri~v~l~~--G~iv~~g~~~ 308 (350)
+.+..+||||+ +|++ |.+...+++.
T Consensus 447 ~~~~~~aDri~-vl~~~~~~~~~~~~~~ 473 (538)
T 3ozx_A 447 SIHDYIADRII-VFKGEPEKAGLATSPV 473 (538)
T ss_dssp HHHHHHCSEEE-EEEEETTTEEEECCCE
T ss_pred HHHHHhCCEEE-EEeCCcceeccCCChH
Confidence 57888999996 4875 4444444443
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.6e-29 Score=261.17 Aligned_cols=174 Identities=10% Similarity=0.048 Sum_probs=132.4
Q ss_pred EEEEEEECCCceEEecCCCeeEeEEEeCC-----cEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 78 KNKILSYTPGAWIENVGGMTLSDYDVPKT-----TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 78 ~~l~~~y~~~~~~~~l~~L~~is~~I~~G-----e~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
++++++|+.. ..+ ++++||++++| |+++|+||||||||||+|+|+|+++ |++|+. +.
T Consensus 350 ~~~~~~y~~~--~~~---l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~-----p~~G~~------~~-- 411 (608)
T 3j16_B 350 ASRAFSYPSL--KKT---QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK-----PDEGQD------IP-- 411 (608)
T ss_dssp SSSCCEECCE--EEE---CSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC-----CSBCCC------CC--
T ss_pred cceeEEecCc--ccc---cCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC-----CCCCcC------cc--
Confidence 6788889643 234 55599999999 7899999999999999999999999 999962 11
Q ss_pred ccccccccCCCccceeeccccccc-cchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 153 YFLQEYTIPRGSNSFSLYDTRSLS-DDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~~~-~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
+..+++.+|+..... ..+.+++. .... ... ...+.+.++++.+++.+
T Consensus 412 ---------~~~i~~~~q~~~~~~~~tv~e~~~-----------~~~~--~~~---~~~~~~~~~l~~l~l~~------- 459 (608)
T 3j16_B 412 ---------KLNVSMKPQKIAPKFPGTVRQLFF-----------KKIR--GQF---LNPQFQTDVVKPLRIDD------- 459 (608)
T ss_dssp ---------SCCEEEECSSCCCCCCSBHHHHHH-----------HHCS--STT---TSHHHHHHTHHHHTSTT-------
T ss_pred ---------CCcEEEecccccccCCccHHHHHH-----------HHhh--ccc---ccHHHHHHHHHHcCChh-------
Confidence 113467777644322 23444321 1000 000 11235667899999987
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-----------------CceEEEEec--h
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 283 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-----------------g~TVIiiTH--~ 283 (350)
++++++.+||||||||++||||| ||||++||. |+|||+||| +
T Consensus 460 ----------~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~ 529 (608)
T 3j16_B 460 ----------IIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI 529 (608)
T ss_dssp ----------TSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred ----------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 56899999999999999999999 999999983 899999999 5
Q ss_pred HHHhcccEEEEEecC--CeEeecCCcccccc
Q 018829 284 DLLSLTDRARIRTYL--GELLGIPPAKQIFD 312 (350)
Q Consensus 284 ~~~~~aDri~v~l~~--G~iv~~g~~~~l~~ 312 (350)
.+..+||||+ +|++ |+++..|+|++++.
T Consensus 530 ~~~~~aDrvi-vl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 530 MATYLADKVI-VFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp HHHHHCSEEE-ECEEETTTEEECCCCEEHHH
T ss_pred HHHHhCCEEE-EEeCCCCeEEecCChHHHhh
Confidence 7888999996 5986 89999999988865
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.96 E-value=2.1e-29 Score=272.12 Aligned_cols=209 Identities=16% Similarity=0.205 Sum_probs=132.6
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 151 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 151 (350)
.++|+++|++|+|+++. .++ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|. ...
T Consensus 669 ~~mL~v~nLs~~Y~g~~-~~i---L~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~-----P~sG~I~~~~~-~~I 738 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTS-KPQ---ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL-----PTSGEVYTHEN-CRI 738 (986)
T ss_dssp SEEEEEEEEEECCTTCS-SCS---EEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC-----CSEEEEEECTT-CCE
T ss_pred CceEEEEeeEEEeCCCC-cee---eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEEcCc-cce
Confidence 45899999999996422 123 777999999999999999999999999999999999 99999999863 111
Q ss_pred Cccccccc------c---------------------CCCccceeecc----------------------------ccccc
Q 018829 152 TYFLQEYT------I---------------------PRGSNSFSLYD----------------------------TRSLS 176 (350)
Q Consensus 152 ~~~~~~~~------~---------------------~~~~~~~~~~d----------------------------~~~~~ 176 (350)
+|..|... . .+....+...+ ...+.
T Consensus 739 ~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e 818 (986)
T 2iw3_A 739 AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818 (986)
T ss_dssp EEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence 22222110 0 00000000000 00000
Q ss_pred -cc-hhhhhHhhH-----HHHHhhhhhhhh------------------hhcCCCcHHHHHHHHHHHHHcCCCCccccccc
Q 018829 177 -DD-ASDNINMIK-----LWIMEGVRHGEL------------------VIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 231 (350)
Q Consensus 177 -~~-v~q~~~l~~-----~~v~~~v~~~~~------------------~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 231 (350)
.+ +.+|+.+.. .++.+|+.++.. ......+...++++.++++.+|+....
T Consensus 819 ~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~----- 893 (986)
T 2iw3_A 819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEI----- 893 (986)
T ss_dssp EEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHH-----
T ss_pred hhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchh-----
Confidence 00 111111100 011111111000 000000112245688899999997521
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-------------CceEEEEec--hHHHh
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLLS 287 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-------------g~TVIiiTH--~~~~~ 287 (350)
..++++.+||||||||++||||| ||||++||. +.|||+||| +.+..
T Consensus 894 ----------~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~ 963 (986)
T 2iw3_A 894 ----------VSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKN 963 (986)
T ss_dssp ----------HHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTT
T ss_pred ----------hcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHH
Confidence 14788999999999999999999 999999984 789999999 56778
Q ss_pred cccEEEEEecCCeEeecCC
Q 018829 288 LTDRARIRTYLGELLGIPP 306 (350)
Q Consensus 288 ~aDri~v~l~~G~iv~~g~ 306 (350)
+||+++ +|++|+++..|+
T Consensus 964 l~DrVi-vL~~G~Iv~~G~ 981 (986)
T 2iw3_A 964 LTEEVW-AVKDGRMTPSGH 981 (986)
T ss_dssp TCCEEE-CCBTTBCCC---
T ss_pred hCCEEE-EEECCEEEEeCC
Confidence 999996 599999988774
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.96 E-value=3.4e-30 Score=267.91 Aligned_cols=179 Identities=15% Similarity=0.096 Sum_probs=123.2
Q ss_pred CcEEE--------EEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEE--
Q 018829 73 SLTDA--------KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV-- 142 (350)
Q Consensus 73 ~~l~i--------~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I-- 142 (350)
.+|++ +||+++|+... .+ |+++| +|++||+++|+||||||||||+|+|+|+++ |++|++
T Consensus 82 ~~i~i~~l~~~~~~~ls~~yg~~~--~~---l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~-----p~~G~~~~ 150 (607)
T 3bk7_A 82 NAISIVNLPEQLDEDCVHRYGVNA--FV---LYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI-----PNLCEDND 150 (607)
T ss_dssp CCCEEEEECTTGGGSEEEECSTTC--CE---EECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC-----CCTTTTCC
T ss_pred ceEEEecCCccccCCeEEEECCCC--ee---eCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC-----CCCCcccc
Confidence 35788 89999996532 24 66699 999999999999999999999999999999 999985
Q ss_pred -------EECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHH
Q 018829 143 -------TYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRC 215 (350)
Q Consensus 143 -------~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~ 215 (350)
.++|.++.. + .......+..+++.+|.... ...++..++.+++... ...+++.+
T Consensus 151 ~~~~~~~~~~G~~~~~-~-~~~~~~~~~~i~~~~q~~~~-------~~~~~~~tv~e~l~~~----------~~~~~~~~ 211 (607)
T 3bk7_A 151 SWDNVIRAFRGNELQN-Y-FERLKNGEIRPVVKPQYVDL-------LPKAVKGKVRELLKKV----------DEVGKFEE 211 (607)
T ss_dssp CHHHHHHHTTTSTHHH-H-HHHHHHTSCCCEEECSCGGG-------GGGTCCSBHHHHHHHT----------CCSSCHHH
T ss_pred ccchhhheeCCEehhh-h-hhhhhhhhcceEEeechhhh-------chhhccccHHHHhhhh----------HHHHHHHH
Confidence 233432210 0 00000001122233332111 1111011333444210 01234677
Q ss_pred HHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-------------
Q 018829 216 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD------------- 273 (350)
Q Consensus 216 ~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~------------- 273 (350)
+++.+|+.+ .+++++.+||||||||++||||| ||||++||.
T Consensus 212 ~L~~lgL~~-----------------~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l 274 (607)
T 3bk7_A 212 VVKELELEN-----------------VLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRL 274 (607)
T ss_dssp HHHHTTCTT-----------------GGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCc-----------------hhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 899999987 56899999999999999999999 999999974
Q ss_pred ---CceEEEEec--hHHHhcccEEEEEecCC
Q 018829 274 ---DKPVVVVTH--GDLLSLTDRARIRTYLG 299 (350)
Q Consensus 274 ---g~TVIiiTH--~~~~~~aDri~v~l~~G 299 (350)
|+|||+||| +.+..+||||+ +|+++
T Consensus 275 ~~~g~tvIivsHdl~~~~~~adri~-vl~~~ 304 (607)
T 3bk7_A 275 ANEGKAVLVVEHDLAVLDYLSDVIH-VVYGE 304 (607)
T ss_dssp HHTTCEEEEECSCHHHHHHHCSEEE-EEESC
T ss_pred HhcCCEEEEEecChHHHHhhCCEEE-EECCC
Confidence 899999999 56778999996 48754
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.95 E-value=4.1e-30 Score=263.95 Aligned_cols=177 Identities=15% Similarity=0.130 Sum_probs=119.3
Q ss_pred EEE-EEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEE---------EE
Q 018829 75 TDA-KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV---------TY 144 (350)
Q Consensus 75 l~i-~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I---------~i 144 (350)
.++ +||+++|+... .+ |+++| +|++||+++|+||||||||||+|+|+|+++ |++|++ .+
T Consensus 21 ~~~~~~ls~~yg~~~--~~---l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~-----p~~G~~~~~~~~~~~~~ 89 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNA--FV---LYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI-----PNLCGDNDSWDGVIRAF 89 (538)
T ss_dssp ---CCCEEEECSTTC--CE---EECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-----CCTTTTCCSHHHHHHHT
T ss_pred hhHhcCcEEEECCcc--cc---ccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCccCcchhhhHHhh
Confidence 455 69999997432 24 66699 999999999999999999999999999999 999984 23
Q ss_pred CCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCC
Q 018829 145 NSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 224 (350)
Q Consensus 145 ~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~ 224 (350)
+|.++.. ........+..+++.+|....... ++..++.+++.. ....+++.++++.+|+..
T Consensus 90 ~g~~~~~--~~~~~~~~~~~~~~~~q~~~~~~~-------~~~~~v~e~~~~----------~~~~~~~~~~l~~lgl~~ 150 (538)
T 1yqt_A 90 RGNELQN--YFEKLKNGEIRPVVKPQYVDLIPK-------AVKGKVIELLKK----------ADETGKLEEVVKALELEN 150 (538)
T ss_dssp TTSTHHH--HHHHHHTTSCCCEEECSCGGGSGG-------GCCSBHHHHHHH----------HCSSSCHHHHHHHTTCTT
T ss_pred CCccHHH--HHHHHHHHhhhhhhhhhhhhhcch-------hhhccHHHHHhh----------hhHHHHHHHHHHHcCCCh
Confidence 3432210 000000011122333333211110 000022233321 011234677899999987
Q ss_pred ccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEEE
Q 018829 225 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVV 279 (350)
Q Consensus 225 ~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVIi 279 (350)
.+++++.+||||||||++||||| ||||++||. |+|||+
T Consensus 151 -----------------~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~ 213 (538)
T 1yqt_A 151 -----------------VLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLV 213 (538)
T ss_dssp -----------------TTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred -----------------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 45899999999999999999999 999999974 899999
Q ss_pred Eec--hHHHhcccEEEEEecCC
Q 018829 280 VTH--GDLLSLTDRARIRTYLG 299 (350)
Q Consensus 280 iTH--~~~~~~aDri~v~l~~G 299 (350)
||| +.+..+||||+ +|++|
T Consensus 214 vsHd~~~~~~~~dri~-vl~~~ 234 (538)
T 1yqt_A 214 VEHDLAVLDYLSDIIH-VVYGE 234 (538)
T ss_dssp ECSCHHHHHHHCSEEE-EEEEE
T ss_pred EeCCHHHHHHhCCEEE-EEcCc
Confidence 999 57778999996 48754
No 55
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.95 E-value=8.6e-29 Score=259.92 Aligned_cols=190 Identities=16% Similarity=0.219 Sum_probs=110.2
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHH---------------------HHHHhccCCCCCCCccc-------EEEECCE
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLV---------------------NRISKVFENDKFASERA-------QVTYNSS 147 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl---------------------~~I~gl~~~~~~~p~~G-------~I~i~G~ 147 (350)
|+||||+|++||++||+||||||||||+ +++.|+.. |+.| .|.+++.
T Consensus 34 L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~-----~~~~~i~~~~~~i~~~~~ 108 (670)
T 3ux8_A 34 LKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK-----PDVDAIEGLSPAISIDQK 108 (670)
T ss_dssp CCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC-------------------CCCSEEESCCCEEEESSC
T ss_pred eeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc-----CCccceeccccceEecCc
Confidence 6669999999999999999999999998 88888888 7744 4555554
Q ss_pred eCCCCccccccccCCCccceeecccccc------ccchh--hhhHhhH-HHHHhhhhhhhhhh-cCCCcHHHH------H
Q 018829 148 VGDGTYFLQEYTIPRGSNSFSLYDTRSL------SDDAS--DNINMIK-LWIMEGVRHGELVI-RRSDSSSLR------N 211 (350)
Q Consensus 148 ~i~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~v~--q~~~l~~-~~v~~~v~~~~~~~-~~~~~~~~~------~ 211 (350)
+.. ...+..+++++|....+ .+.++ ++...+. .++.+|+.+..... ........+ .
T Consensus 109 ~~~--------~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (670)
T 3ux8_A 109 TTS--------RNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIR 180 (670)
T ss_dssp C-------------CCBHHHHTTCC-------------------------CC--------------------------CH
T ss_pred hhh--------ccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHH
Confidence 332 11122334444432211 01111 1111111 24455554421100 000000000 1
Q ss_pred HHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh-----------chhhcCCCC-------
Q 018829 212 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD------- 273 (350)
Q Consensus 212 ~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-----------DEPts~Ld~------- 273 (350)
....+++.+|+.+. .+++++.+||||||||++||||| ||||++||+
T Consensus 181 ~~~~~l~~~gL~~~----------------~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~ 244 (670)
T 3ux8_A 181 DRLGFLQNVGLDYL----------------TLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLI 244 (670)
T ss_dssp HHHHHHHHTTCTTC----------------CTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHH
T ss_pred HHHHHHHHcCCchh----------------hhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHH
Confidence 12245888999763 24789999999999999999998 999999974
Q ss_pred ---------CceEEEEech-HHHhcccEEEEEe------cCCeEeecCCccccccCCC
Q 018829 274 ---------DKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPE 315 (350)
Q Consensus 274 ---------g~TVIiiTH~-~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~ 315 (350)
|+|||+|||+ .....||+++ +| ++|++++.|++++++..+.
T Consensus 245 ~~l~~l~~~g~tvi~vtHd~~~~~~~d~ii-~l~~g~~~~~G~i~~~g~~~~~~~~~~ 301 (670)
T 3ux8_A 245 ATLKSMRDLGNTLIVVEHDEDTMLAADYLI-DIGPGAGIHGGEVVAAGTPEEVMNDPN 301 (670)
T ss_dssp HHHHHHHHTTCEEEEECCCHHHHHHCSEEE-EECSSSGGGCCSEEEEECHHHHHTCTT
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHhhCCEEE-EecccccccCCEEEEecCHHHHhcCch
Confidence 8999999992 3445699996 58 8999999999999987654
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.94 E-value=3.2e-27 Score=247.93 Aligned_cols=96 Identities=15% Similarity=0.162 Sum_probs=77.7
Q ss_pred HHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh------------chhhcCCCC-----
Q 018829 211 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD----- 273 (350)
Q Consensus 211 ~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL------------DEPts~Ld~----- 273 (350)
+++.+++..+++... .+++++.+||||||||++||||| ||||++||+
T Consensus 521 ~~~~~~l~~~~l~~~----------------~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~ 584 (670)
T 3ux8_A 521 KRKLETLYDVGLGYM----------------KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIAR 584 (670)
T ss_dssp HHHHHHHHHTTCTTS----------------BTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHH
T ss_pred HHHHHHHHHcCCchh----------------hccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHH
Confidence 456677888998652 24789999999999999999998 999999974
Q ss_pred -----------CceEEEEech-HHHhcccEEEEEe------cCCeEeecCCccccccCCCCCChHHHHH
Q 018829 274 -----------DKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENELI 324 (350)
Q Consensus 274 -----------g~TVIiiTH~-~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 324 (350)
|+|||+|||+ .....||||+ +| ++|+|++.|+++++...+. .++..++.
T Consensus 585 i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~-~l~~~~g~~~G~i~~~g~~~~~~~~~~-~~~~~~~~ 651 (670)
T 3ux8_A 585 LLDVLHRLVDNGDTVLVIEHNLDVIKTADYII-DLGPEGGDRGGQIVAVGTPEEVAEVKE-SHTGRYLK 651 (670)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE-EEESSSGGGCCEEEEEECHHHHHTCTT-CHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEE-EecCCcCCCCCEEEEecCHHHHHhCCc-cHHHHHHH
Confidence 8999999992 3456799996 59 8999999999999976543 44455544
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.3e-28 Score=251.33 Aligned_cols=175 Identities=14% Similarity=0.032 Sum_probs=114.3
Q ss_pred EEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcccccc
Q 018829 79 NKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEY 158 (350)
Q Consensus 79 ~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~ 158 (350)
|++++|+..... |++++ .+++||++||+||||||||||+|+|+|+++ |++|+|..... . ....
T Consensus 82 ~~~~~Y~~~~~~-----l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~-----P~~G~i~~~~~--~----~~~~ 144 (608)
T 3j16_B 82 HVTHRYSANSFK-----LHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK-----PNLGRFDDPPE--W----QEII 144 (608)
T ss_dssp TEEEECSTTSCE-----EECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-----CCTTTTCCSSC--H----HHHH
T ss_pred CeEEEECCCcee-----ecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCceEecccc--h----hhhh
Confidence 568889755433 44466 589999999999999999999999999999 99998731110 0 0000
Q ss_pred -ccCCCccceeecccc-----cccc--chhhhhHhhHH-------HHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCC
Q 018829 159 -TIPRGSNSFSLYDTR-----SLSD--DASDNINMIKL-------WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE 223 (350)
Q Consensus 159 -~~~~~~~~~~~~d~~-----~~~~--~v~q~~~l~~~-------~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~ 223 (350)
.+. +..++... .... +..|.....+. ++.+++.. . .....+++.++++.+|+.
T Consensus 145 ~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~----~----~~~~~~~~~~~l~~~gl~ 212 (608)
T 3j16_B 145 KYFR----GSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKL----R----MEKSPEDVKRYIKILQLE 212 (608)
T ss_dssp HHTT----TSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHH----H----CCSCHHHHHHHHHHHTCT
T ss_pred heec----ChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhh----h----hhhHHHHHHHHHHHcCCc
Confidence 000 00000000 0000 00011110110 11111110 0 011235688899999998
Q ss_pred CccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC----------------CceEE
Q 018829 224 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVV 278 (350)
Q Consensus 224 ~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~----------------g~TVI 278 (350)
+ .+++++.+||||||||++||||| ||||++||. |+|||
T Consensus 213 ~-----------------~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi 275 (608)
T 3j16_B 213 N-----------------VLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVI 275 (608)
T ss_dssp G-----------------GGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEE
T ss_pred c-----------------hhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 7 56999999999999999999999 999999873 89999
Q ss_pred EEec--hHHHhcccEEEEEecCCe
Q 018829 279 VVTH--GDLLSLTDRARIRTYLGE 300 (350)
Q Consensus 279 iiTH--~~~~~~aDri~v~l~~G~ 300 (350)
+||| +.+..+||||+ +|++|.
T Consensus 276 ~vtHdl~~~~~~~drv~-vl~~~~ 298 (608)
T 3j16_B 276 CVEHDLSVLDYLSDFVC-IIYGVP 298 (608)
T ss_dssp EECSCHHHHHHHCSEEE-EEESCT
T ss_pred EEeCCHHHHHHhCCEEE-EEeCCc
Confidence 9999 67888999996 488765
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.94 E-value=1.7e-26 Score=249.55 Aligned_cols=175 Identities=13% Similarity=0.070 Sum_probs=126.6
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 153 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 153 (350)
.+...|++++|++ ..+ |+++||+|++|++++|+||||||||||+|+|+| |+| +|.+...
T Consensus 435 ~L~~~~ls~~yg~---~~i---L~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag-----------G~i--~g~~~~~-- 493 (986)
T 2iw3_A 435 DLCNCEFSLAYGA---KIL---LNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-----------GQV--DGFPTQE-- 493 (986)
T ss_dssp EEEEEEEEEEETT---EEE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH-----------TCS--TTCCCTT--
T ss_pred eeEEeeEEEEECC---EEe---EecceEEEcCCCEEEEECCCCCCHHHHHHHHhC-----------CCc--CCCcccc--
Confidence 4677799999964 234 777999999999999999999999999999995 111 2222110
Q ss_pred cccccccCCCccceeeccc-cccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccce
Q 018829 154 FLQEYTIPRGSNSFSLYDT-RSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 232 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~-~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 232 (350)
. ..+.|++|+. ..+..+ ++.+++.+ . ... . ++++.++++.+|+...
T Consensus 494 -----~---~~~~~v~q~~~~~~~~l----------tv~e~l~~--~-~~~---~--~~~v~~~L~~lgL~~~------- 540 (986)
T 2iw3_A 494 -----E---CRTVYVEHDIDGTHSDT----------SVLDFVFE--S-GVG---T--KEAIKDKLIEFGFTDE------- 540 (986)
T ss_dssp -----T---SCEEETTCCCCCCCTTS----------BHHHHHHT--T-CSS---C--HHHHHHHHHHTTCCHH-------
T ss_pred -----c---eeEEEEcccccccccCC----------cHHHHHHH--h-hcC---H--HHHHHHHHHHcCCChh-------
Confidence 0 0123444432 111111 23344432 1 001 1 5678889999999632
Q ss_pred eeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC-------------CceEEEEec--hHHHhc
Q 018829 233 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLLSL 288 (350)
Q Consensus 233 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~-------------g~TVIiiTH--~~~~~~ 288 (350)
..++++.+||||||||++||||| ||||++||. |.|||+||| +.+..+
T Consensus 541 ---------~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~~ 611 (986)
T 2iw3_A 541 ---------MIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNV 611 (986)
T ss_dssp ---------HHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHHHH
T ss_pred ---------hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHh
Confidence 45889999999999999999999 999999984 899999999 577889
Q ss_pred ccEEEEEecCCeEe-ecCCcccccc
Q 018829 289 TDRARIRTYLGELL-GIPPAKQIFD 312 (350)
Q Consensus 289 aDri~v~l~~G~iv-~~g~~~~l~~ 312 (350)
||+++ +|++|+++ ..|++++++.
T Consensus 612 adrii-~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 612 CEYII-NYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp CSEEE-EEETTEEEEEESCHHHHHH
T ss_pred CCEEE-EEECCeeecCCCCHHHHHh
Confidence 99996 59999997 5788877653
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.93 E-value=1.3e-27 Score=245.32 Aligned_cols=174 Identities=16% Similarity=0.117 Sum_probs=114.8
Q ss_pred EEEEEEECCCceEEecCCCeeEeEEEe-CCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEE-----------EEC
Q 018829 78 KNKILSYTPGAWIENVGGMTLSDYDVP-KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV-----------TYN 145 (350)
Q Consensus 78 ~~l~~~y~~~~~~~~l~~L~~is~~I~-~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I-----------~i~ 145 (350)
++.+.+|+.+.. +-..|.++ +||++||+||||||||||+|+|+|+++ |++|+| .++
T Consensus 3 ~~~~~~~~~~~f-------~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~-----p~~G~i~~~~~~~~~~~~~~ 70 (538)
T 3ozx_A 3 GEVIHRYKVNGF-------KLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEII-----PNFGDPNSKVGKDEVLKRFR 70 (538)
T ss_dssp CCEEEESSTTSC-------EEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC-----CCTTCTTSCCCHHHHHHHHT
T ss_pred CCCceecCCCce-------eecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCccccccchhhHHhhcC
Confidence 357889986653 33455555 899999999999999999999999999 999988 455
Q ss_pred CEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCc
Q 018829 146 SSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 225 (350)
Q Consensus 146 G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~ 225 (350)
|.++.. + .+........+....+ ++.+...++..++.+++.. ...++++.++++.+++..
T Consensus 71 g~~i~~-~-~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~~l~~----------~~~~~~~~~~l~~l~l~~- 130 (538)
T 3ozx_A 71 GKEIYN-Y-FKELYSNELKIVHKIQ-------YVEYASKFLKGTVNEILTK----------IDERGKKDEVKELLNMTN- 130 (538)
T ss_dssp TSTTHH-H-HHHHHTTCCCEEEECS-------CTTGGGTTCCSBHHHHHHH----------HCCSSCHHHHHHHTTCGG-
T ss_pred CeeHHH-H-HHHHhhcccchhhccc-------hhhhhhhhccCcHHHHhhc----------chhHHHHHHHHHHcCCch-
Confidence 544320 0 0000000000011111 1111111111111121110 011234667889999987
Q ss_pred cccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCCC---------------CceEEEEe
Q 018829 226 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVT 281 (350)
Q Consensus 226 ~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld~---------------g~TVIiiT 281 (350)
..++++.+||||||||++||||| ||||++||. |+|||+||
T Consensus 131 ----------------~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vs 194 (538)
T 3ozx_A 131 ----------------LWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVD 194 (538)
T ss_dssp ----------------GTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred ----------------hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 45899999999999999999999 999999873 89999999
Q ss_pred c--hHHHhcccEEEEEecCCe
Q 018829 282 H--GDLLSLTDRARIRTYLGE 300 (350)
Q Consensus 282 H--~~~~~~aDri~v~l~~G~ 300 (350)
| +.+..+||+|+ +|++|.
T Consensus 195 Hdl~~~~~~~d~i~-vl~~~~ 214 (538)
T 3ozx_A 195 HDLIVLDYLTDLIH-IIYGES 214 (538)
T ss_dssp SCHHHHHHHCSEEE-EEEEET
T ss_pred eChHHHHhhCCEEE-EecCCc
Confidence 9 67788999996 487653
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.92 E-value=4e-25 Score=238.13 Aligned_cols=97 Identities=16% Similarity=0.123 Sum_probs=80.9
Q ss_pred HHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh------------chhhcCCCC----
Q 018829 210 RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD---- 273 (350)
Q Consensus 210 ~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL------------DEPts~Ld~---- 273 (350)
..++.++|+.+||... .+++++.+||||||||++||||| ||||++||.
T Consensus 782 ~~~~~~~L~~vGL~~~----------------~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~ 845 (916)
T 3pih_A 782 IKRTLQVLHDVGLGYV----------------KLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVR 845 (916)
T ss_dssp HHHHHHHHHHTTGGGS----------------BTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHH
T ss_pred HHHHHHHHHHcCCchh----------------hccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHH
Confidence 3566788999999752 24789999999999999999998 999999873
Q ss_pred ------------CceEEEEec-hHHHhcccEEEEEe------cCCeEeecCCccccccCCCCCChHHHHH
Q 018829 274 ------------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENELI 324 (350)
Q Consensus 274 ------------g~TVIiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 324 (350)
|.|||+||| -.+.+.||+|+ +| ++|+|++.|++++++..+ .+++..++.
T Consensus 846 ~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIi-vLgp~gg~~~G~Iv~~Gtpeel~~~~-~syt~~~l~ 913 (916)
T 3pih_A 846 KLVEVLHRLVDRGNTVIVIEHNLDVIKNADHII-DLGPEGGKEGGYIVATGTPEEIAKNP-HSYTGRFLK 913 (916)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE-EEESSSGGGCCEEEEEESHHHHHSCT-TCHHHHHHT
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEE-EecCCCCCCCCEEEEEcCHHHHHhCC-chHHHHHHH
Confidence 899999999 34456699996 59 899999999999999876 567766653
No 61
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.92 E-value=1.1e-24 Score=233.02 Aligned_cols=95 Identities=15% Similarity=0.078 Sum_probs=79.4
Q ss_pred HHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh------------chhhcCCCC-----
Q 018829 211 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD----- 273 (350)
Q Consensus 211 ~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL------------DEPts~Ld~----- 273 (350)
+++.++++.+||... .+++.+.+||||||||++|||+| ||||++||.
T Consensus 708 ~~~~~~L~~~gL~~~----------------~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~ 771 (842)
T 2vf7_A 708 FRALDTLREVGLGYL----------------RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVER 771 (842)
T ss_dssp HHHHHHHHHTTCTTS----------------BTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHH
T ss_pred HHHHHHHHHcCCCcc----------------cccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHH
Confidence 467889999999762 14788999999999999999998 999999873
Q ss_pred -----------CceEEEEec--hHHHhcccEEEEEe------cCCeEeecCCccccccCCCCCChHHHHH
Q 018829 274 -----------DKPVVVVTH--GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENELI 324 (350)
Q Consensus 274 -----------g~TVIiiTH--~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 324 (350)
|.|||+||| +.+ ..||+|+ +| ++|+|++.|++++++..+. .++..++.
T Consensus 772 l~~lL~~L~~~G~tVIvisHdl~~i-~~aDrii-~L~p~~g~~~G~Iv~~g~~~el~~~~~-~~t~~~l~ 838 (842)
T 2vf7_A 772 LQRQLVKLVDAGNTVIAVEHKMQVV-AASDWVL-DIGPGAGEDGGRLVAQGTPAEVAQAAG-SVTAPYLR 838 (842)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEE-EECSSSGGGCCSEEEEECHHHHTTCTT-CSSHHHHH
T ss_pred HHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEE-EECCCCCCCCCEEEEEcCHHHHHhCch-hHHHHHHH
Confidence 899999999 455 7899996 59 7999999999999988765 35555543
No 62
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.9e-28 Score=245.88 Aligned_cols=177 Identities=11% Similarity=-0.024 Sum_probs=129.0
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCccc-E-EEECCEeC
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-Q-VTYNSSVG 149 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G-~-I~i~G~~i 149 (350)
.++++++||+++|+ + +||++++|++++|+||||||||||+|+|+|++. |++| + |.++| +.
T Consensus 116 ~~mi~~~nl~~~y~---------~---vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~-----p~~G~~pI~vdg-~~ 177 (460)
T 2npi_A 116 HTMKYIYNLHFMLE---------K---IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL-----KFNAYQPLYINL-DP 177 (460)
T ss_dssp CTHHHHHHHHHHHH---------H---HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH-----HHHCCCCEEEEC-CT
T ss_pred cchhhhhhhhehhh---------c---CceEeCCCCEEEEECCCCCCHHHHHHHHhCccc-----ccCCceeEEEcC-Cc
Confidence 56789999998884 2 899999999999999999999999999999999 9999 9 99987 21
Q ss_pred CCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccc
Q 018829 150 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 229 (350)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 229 (350)
++.+++++|+...+... . ..++.+|+ ++........ ..+++.++++.+|+.+
T Consensus 178 ------------~~~i~~vpq~~~l~~~~--~-----~~tv~eni-~~~~~~~~~~---~~~~~~~ll~~~gl~~----- 229 (460)
T 2npi_A 178 ------------QQPIFTVPGCISATPIS--D-----ILDAQLPT-WGQSLTSGAT---LLHNKQPMVKNFGLER----- 229 (460)
T ss_dssp ------------TSCSSSCSSCCEEEECC--S-----CCCTTCTT-CSCBCBSSCC---SSCCBCCEECCCCSSS-----
T ss_pred ------------cCCeeeeccchhhcccc--c-----ccchhhhh-cccccccCcc---hHHHHHHHHHHhCCCc-----
Confidence 23456777765432100 0 00122333 2221100100 1123445677788876
Q ss_pred cceeeeecchhhhhccCCCCCCHHHHHHHHHHHH--h-------------ch-hhcCCCC------------CceEEEEe
Q 018829 230 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT--F-------------NC-PYLSFRD------------DKPVVVVT 281 (350)
Q Consensus 230 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArA--L-------------DE-Pts~Ld~------------g~TVIiiT 281 (350)
..+ +.+||||||||++|||| | || |+++||. ++|+|+||
T Consensus 230 ------------~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~~~~l~~l~~~~~~tviiVt 295 (460)
T 2npi_A 230 ------------INE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHHIIEKLNVNIMLVL 295 (460)
T ss_dssp ------------GGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSSCHHHHHHHHHTTCCEEEEE
T ss_pred ------------ccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChhHHHHHHHHHHhCCCEEEEE
Confidence 333 88999999999999999 4 99 9999874 88999999
Q ss_pred c--h------HHHhcccE-----EEEEec-CCeEeecCCcccc
Q 018829 282 H--G------DLLSLTDR-----ARIRTY-LGELLGIPPAKQI 310 (350)
Q Consensus 282 H--~------~~~~~aDr-----i~v~l~-~G~iv~~g~~~~l 310 (350)
| + .+..+||| |+ +|+ +|+++ .|+++++
T Consensus 296 h~~~~~l~~~~~~~~~dr~~~~~vi-~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 296 CSETDPLWEKVKKTFGPELGNNNIF-FIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp CCSSCTHHHHHHHHHHHHHCGGGEE-EECCCTTCC-CCCHHHH
T ss_pred ccCchhhhHHHHHHhcccccCCEEE-EEeCCCcEE-ECCHHHH
Confidence 9 5 55689999 95 598 99999 8887654
No 63
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.90 E-value=3e-23 Score=223.08 Aligned_cols=95 Identities=15% Similarity=0.144 Sum_probs=77.5
Q ss_pred HHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh------------chhhcCCCC------
Q 018829 212 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD------ 273 (350)
Q Consensus 212 ~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL------------DEPts~Ld~------ 273 (350)
++.++++.+||... .+++.+.+||||||||++|||+| ||||++||.
T Consensus 824 ~~~~~L~~~gL~~~----------------~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l 887 (972)
T 2r6f_A 824 RKLETLYDVGLGYM----------------KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARL 887 (972)
T ss_dssp HHHHHHHHTTCSSS----------------BTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHH
T ss_pred HHHHHHHHcCCCcc----------------cccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHH
Confidence 45678999999762 24789999999999999999998 999999873
Q ss_pred ----------CceEEEEec-hHHHhcccEEEEEe------cCCeEeecCCccccccCCCCCChHHHHH
Q 018829 274 ----------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENELI 324 (350)
Q Consensus 274 ----------g~TVIiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 324 (350)
|.|||+||| -.....||+|+ +| ++|++++.|++++++..+. .++..++.
T Consensus 888 ~~lL~~L~~~G~TVIvisHdl~~i~~aDrIi-vL~p~gG~~~G~Iv~~g~~~el~~~~~-~~t~~~l~ 953 (972)
T 2r6f_A 888 LDVLHRLVDNGDTVLVIEHNLDVIKTADYII-DLGPEGGDRGGQIVAVGTPEEVAEVKE-SHTGRYLK 953 (972)
T ss_dssp HHHHHHHHHTTCEEEEECCCHHHHTTCSEEE-EECSSSTTSCCSEEEEESHHHHHTCTT-CHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEEcCCHHHHHhCCEEE-EEcCCCCCCCCEEEEecCHHHHHhCch-hHHHHHHH
Confidence 899999999 23446899996 59 7899999999999987654 44444443
No 64
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.89 E-value=4.3e-23 Score=222.57 Aligned_cols=94 Identities=15% Similarity=0.120 Sum_probs=76.5
Q ss_pred HHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh------------chhhcCCCC------
Q 018829 212 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD------ 273 (350)
Q Consensus 212 ~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL------------DEPts~Ld~------ 273 (350)
++.++++.+||... .+++.+.+||||||||++||++| ||||++||.
T Consensus 842 ~~~~~L~~lgL~~~----------------~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l 905 (993)
T 2ygr_A 842 RYLRTLVDVGLGYV----------------RLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKL 905 (993)
T ss_dssp HHHHHHHHTTGGGS----------------BTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHH
T ss_pred HHHHHHHHcCCCcc----------------cccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHH
Confidence 45678999999752 24788999999999999999999 999999873
Q ss_pred ----------CceEEEEec-hHHHhcccEEEEEe------cCCeEeecCCccccccCCCCCChHHHH
Q 018829 274 ----------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENEL 323 (350)
Q Consensus 274 ----------g~TVIiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~ 323 (350)
|.|||+||| -.....||+|+ +| ++|++++.|++++++..+. .++..++
T Consensus 906 ~~lL~~L~~~G~TVIvisHdl~~i~~aDrIi-vL~p~gg~~~G~Iv~~G~~~el~~~~~-~~t~~~l 970 (993)
T 2ygr_A 906 LNVINGLVDKGNTVIVIEHNLDVIKTSDWII-DLGPEGGAGGGTVVAQGTPEDVAAVPA-SYTGKFL 970 (993)
T ss_dssp HHHHHHHHHTTCEEEEECCCHHHHTTCSEEE-EEESSSTTSCSEEEEEECHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHhCCCEEEEEcCCHHHHHhCCEEE-EECCCcCCCCCEEEEecCHHHHHhCCH-HHHHHHH
Confidence 899999999 23346899996 59 7999999999999987654 3444444
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.87 E-value=1.7e-22 Score=199.14 Aligned_cols=54 Identities=13% Similarity=0.123 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHh-----------chhhcCCCC---------------CceEEEEec-hHHHhcccEEEEEe----cC
Q 018829 250 SDVEKQYNQIVATTF-----------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRT----YL 298 (350)
Q Consensus 250 LSGGqrQRvaIArAL-----------DEPts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~l----~~ 298 (350)
||||||||++||++| ||||++||. +.|||+||| ..+...||+++ +| ++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~-~l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHY-KVEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEE-EEEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEE-EEEEeccC
Confidence 699999999999998 999999873 799999999 45557899996 59 89
Q ss_pred CeEeec
Q 018829 299 GELLGI 304 (350)
Q Consensus 299 G~iv~~ 304 (350)
|+++..
T Consensus 375 G~~~~~ 380 (415)
T 4aby_A 375 GRTVSH 380 (415)
T ss_dssp TEEEEE
T ss_pred CceEEE
Confidence 998765
No 66
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.86 E-value=1.6e-25 Score=214.60 Aligned_cols=184 Identities=13% Similarity=0.072 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHHHHHccchhcccCC------CCcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCCh
Q 018829 45 DSLVDQRRRDAVFREVLQSYDQLRTRI------GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSG 118 (350)
Q Consensus 45 ~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsG 118 (350)
..+.....+..|+.++++.+.+..... ..+|+++||+|+|+ . ++ |+++||+|++|++++|+||||||
T Consensus 66 ~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~--~--~v---L~~vsl~i~~Ge~vaIvGpsGsG 138 (305)
T 2v9p_A 66 RHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITF--I--NA---LKLWLKGIPKKNCLAFIGPPNTG 138 (305)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHCCSSCCTHHHHHHHHHTTCCHHHH--H--HH---HHHHHHTCTTCSEEEEECSSSSS
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCCCcccccCCeEEEEEEEEEcC--h--hh---hccceEEecCCCEEEEECCCCCc
Confidence 334444455569999998765532221 12589999999996 2 24 77799999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHh-hhhhh
Q 018829 119 KSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIME-GVRHG 197 (350)
Q Consensus 119 KSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~-~v~~~ 197 (350)
||||+++|+|++. |+|.. ++.|+...+.+ ++.+ |+.++
T Consensus 139 KSTLl~lL~gl~~--------G~I~~----------------------~v~q~~~lf~~-----------ti~~~ni~~~ 177 (305)
T 2v9p_A 139 KSMLCNSLIHFLG--------GSVLS----------------------FANHKSHFWLA-----------SLADTRAALV 177 (305)
T ss_dssp HHHHHHHHHHHHT--------CEEEC----------------------GGGTTSGGGGG-----------GGTTCSCEEE
T ss_pred HHHHHHHHhhhcC--------ceEEE----------------------EecCccccccc-----------cHHHHhhccC
Confidence 9999999999983 88842 22222222222 2222 44432
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh--chh---hcCCC
Q 018829 198 ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF--NCP---YLSFR 272 (350)
Q Consensus 198 ~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL--DEP---ts~Ld 272 (350)
.. .. . .+.+.++.+ +.. .++ +..|||||||| |||| +.| |++||
T Consensus 178 ~~----~~-~----~~~~~i~~~-L~~-----------------gld--g~~LSgGqkQR---ARAll~~p~iLlTs~LD 225 (305)
T 2v9p_A 178 DD----AT-H----ACWRYFDTY-LRN-----------------ALD--GYPVSIDRKHK---AAVQIKAPPLLVTSNID 225 (305)
T ss_dssp EE----EC-H----HHHHHHHHT-TTG-----------------GGG--TCCEECCCSSC---CCCEECCCCEEEEESSC
T ss_pred cc----cc-H----HHHHHHHHH-hHc-----------------cCC--ccCcCHHHHHH---HHHHhCCCCEEEECCCC
Confidence 11 00 1 334445543 443 123 77999999999 9998 444 88888
Q ss_pred C--CceEEEEec-hHHHhcccEEEEEecCCeEeecCCcccc
Q 018829 273 D--DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQI 310 (350)
Q Consensus 273 ~--g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l 310 (350)
. ...+..+|| ..+...||+| + |++|++++.|+++++
T Consensus 226 ~~~~~~i~~ltH~~~~~~~aD~i-v-l~~G~iv~~g~~~el 264 (305)
T 2v9p_A 226 VQAEDRYLYLHSRVQTFRFEQPC-T-DESGEQPFNITDADW 264 (305)
T ss_dssp STTCGGGGGGTTTEEEEECCCCC-C-CC---CCCCCCHHHH
T ss_pred HHHHHHHHHHhCCHHHHHhCCEE-E-EeCCEEEEeCCHHHH
Confidence 4 223334589 3456789999 7 999999999999876
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.79 E-value=2.9e-19 Score=171.62 Aligned_cols=59 Identities=14% Similarity=0.021 Sum_probs=48.0
Q ss_pred hccCCCCCCHHHHHHHHHHHHh-------------chhhcCCCC---------------CceEEEEec-hHHHhcccEE-
Q 018829 243 LKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRA- 292 (350)
Q Consensus 243 ~~~~~~~LSGGqrQRvaIArAL-------------DEPts~Ld~---------------g~TVIiiTH-~~~~~~aDri- 292 (350)
.+..+..||+|||||++||+|| ||||++||+ +.|||++|| ..+...||++
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~ 292 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLH 292 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEE
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEE
Confidence 4567789999999999999975 999999874 789999999 4567789986
Q ss_pred EEEecCCeE
Q 018829 293 RIRTYLGEL 301 (350)
Q Consensus 293 ~v~l~~G~i 301 (350)
.++|.+|..
T Consensus 293 ~v~~~~g~s 301 (322)
T 1e69_A 293 GVTMVNGVS 301 (322)
T ss_dssp EEEESSSCE
T ss_pred EEEEeCCEE
Confidence 234777754
No 68
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.78 E-value=7.1e-20 Score=160.24 Aligned_cols=30 Identities=30% Similarity=0.541 Sum_probs=28.1
Q ss_pred eEeEEEeCCcEEEEEcCCCChHHHHHHHHH
Q 018829 98 LSDYDVPKTTSLLLIGPKGSGKSSLVNRIS 127 (350)
Q Consensus 98 ~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~ 127 (350)
++||++++||+++|+||||||||||+|++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 499999999999999999999999999854
No 69
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.76 E-value=1.1e-18 Score=171.01 Aligned_cols=59 Identities=15% Similarity=0.165 Sum_probs=51.0
Q ss_pred ccCCCCCCHHHHHHHHHHHHh---------------chhhcCCCC----------------CceEEEEec-hHHHhcccE
Q 018829 244 KSMEGDSDVEKQYNQIVATTF---------------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDR 291 (350)
Q Consensus 244 ~~~~~~LSGGqrQRvaIArAL---------------DEPts~Ld~----------------g~TVIiiTH-~~~~~~aDr 291 (350)
++++.+||||||||++||||| ||||++||+ |+|||+||| -.....||+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~ 353 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDR 353 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 678889999999999999886 999999874 799999999 344678999
Q ss_pred EEEEecCCeEee
Q 018829 292 ARIRTYLGELLG 303 (350)
Q Consensus 292 i~v~l~~G~iv~ 303 (350)
++ +|++|++++
T Consensus 354 ~~-~l~~G~i~~ 364 (365)
T 3qf7_A 354 KL-RITGGVVVN 364 (365)
T ss_dssp EE-EEETTEEC-
T ss_pred EE-EEECCEEEe
Confidence 96 599999975
No 70
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.75 E-value=1.8e-21 Score=195.21 Aligned_cols=183 Identities=12% Similarity=0.090 Sum_probs=121.2
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCE---eC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---VG 149 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~---~i 149 (350)
++++++++++.|+.+ +.+ |+++ |+|.+|++++|+||||||||||+++|+|+.+ |+.|.|.++|+ ++
T Consensus 130 ~~l~~~~v~~~~~tg--~~v---ld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~-----~~~G~i~~~G~r~~ev 198 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG--VRA---INAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR-----ADVIVVGLIGERGREV 198 (438)
T ss_dssp CTTTSCCCCSBCCCS--CHH---HHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC-----CSEEEEEEESCCHHHH
T ss_pred CceEEeccceecCCC--ceE---Eeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC-----CCeEEEEEeceecHHH
Confidence 578999999999633 345 6669 9999999999999999999999999999999 99999999997 33
Q ss_pred CCCccccc---cccCCCccceeeccccccccchhhhhHhhH-HHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCc
Q 018829 150 DGTYFLQE---YTIPRGSNSFSLYDTRSLSDDASDNINMIK-LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 225 (350)
Q Consensus 150 ~~~~~~~~---~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~-~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~ 225 (350)
.. .... ....++.+++++|+. ..++. .++.+|+.+... .....+ .
T Consensus 199 ~~--~~~~~~~~~~l~r~i~~v~q~~----------~~~~~~~~v~~~~~~~ae----------------~~~~~~--~- 247 (438)
T 2dpy_A 199 KD--FIENILGPDGRARSVVIAAPAD----------VSPLLRMQGAAYATRIAE----------------DFRDRG--Q- 247 (438)
T ss_dssp HH--HHHTTTHHHHHHTEEEEEECTT----------SCHHHHHHHHHHHHHHHH----------------HHHTTT--C-
T ss_pred HH--HHHhhccccccCceEEEEECCC----------CCHHHHHHHHHHHHHHHH----------------HHHhCC--C-
Confidence 20 0000 000112334444421 11122 244444442211 111101 1
Q ss_pred cccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHhchh--hcCCCC--------------------Cc-----eEE
Q 018829 226 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRD--------------------DK-----PVV 278 (350)
Q Consensus 226 ~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArALDEP--ts~Ld~--------------------g~-----TVI 278 (350)
+ |..++|. ...||+|| ||++|| +.+| +++||+ |+ ||+
T Consensus 248 -----~-v~~~ld~-------l~~lS~g~-qrvslA--l~~p~~t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVl 311 (438)
T 2dpy_A 248 -----H-VLLIMDS-------LTRYAMAQ-REIALA--IGEPPATKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVL 311 (438)
T ss_dssp -----E-EEEEEEC-------HHHHHHHH-HHHHHH--TTCCCCSSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEE
T ss_pred -----C-HHHHHHh-------HHHHHHHH-HHHHHH--hCCCcccccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEE
Confidence 1 1122222 44689999 999999 6566 666542 32 899
Q ss_pred EEechHHHhcccEEEEEecCCeEeecCCccccccCC
Q 018829 279 VVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 314 (350)
Q Consensus 279 iiTH~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 314 (350)
++||+....+||+++ +|.+|+|+..+++.++...|
T Consensus 312 v~tHdl~~~iad~v~-~l~dG~Ivl~~~~~~~~~~P 346 (438)
T 2dpy_A 312 TEGDDQQDPIADSAR-AILDGHIVLSRRLAEAGHYP 346 (438)
T ss_dssp CSSSCSCCHHHHHHH-HHSSEEEEECHHHHHTTCSS
T ss_pred EeCCCccchhhceEE-EEeCcEEEEeCCHHHccCCC
Confidence 999953377899995 59999999999998887654
No 71
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.73 E-value=5.8e-20 Score=175.76 Aligned_cols=158 Identities=13% Similarity=0.092 Sum_probs=105.3
Q ss_pred eeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccc-cccccC-CCccceeeccccc
Q 018829 97 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL-QEYTIP-RGSNSFSLYDTRS 174 (350)
Q Consensus 97 ~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~-~~~~~~-~~~~~~~~~d~~~ 174 (350)
..+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...... +...+. +..+++++|+
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~-----~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~--- 162 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK-----NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAE--- 162 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC---
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH-----HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEec---
Confidence 34899999999999999999999999999999999 9999999999886421000 000010 1123444443
Q ss_pred cccchhhhhH-hhHH-HHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCH
Q 018829 175 LSDDASDNIN-MIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV 252 (350)
Q Consensus 175 ~~~~v~q~~~-l~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSG 252 (350)
.. +.+. ++.+++.++... ..+ ..+++.+|+.+ ..++++.+||
T Consensus 163 --------~~~~~~~~~v~e~l~~~~~~--~~d--------~~lldt~gl~~-----------------~~~~~~~eLS- 206 (302)
T 3b9q_A 163 --------GDKAKAATVLSKAVKRGKEE--GYD--------VVLCDTSGRLH-----------------TNYSLMEELI- 206 (302)
T ss_dssp ----------CCCHHHHHHHHHHHHHHT--TCS--------EEEECCCCCSS-----------------CCHHHHHHHH-
T ss_pred --------CCccCHHHHHHHHHHHHHHc--CCc--------chHHhcCCCCc-----------------chhHHHHHHH-
Confidence 33 2222 556666543221 000 12345566655 2366777899
Q ss_pred HHHHHHHHHHHh-----------chhhcCCCC-----------CceEEEEec-h----------HHHhcccEEEEEecCC
Q 018829 253 EKQYNQIVATTF-----------NCPYLSFRD-----------DKPVVVVTH-G----------DLLSLTDRARIRTYLG 299 (350)
Q Consensus 253 GqrQRvaIArAL-----------DEPts~Ld~-----------g~TVIiiTH-~----------~~~~~aDri~v~l~~G 299 (350)
+||++||||| | ||+++|. +.|+|++|| + .+...++.|. ++..|
T Consensus 207 --kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~-~i~~G 282 (302)
T 3b9q_A 207 --ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVK-FIGVG 282 (302)
T ss_dssp --HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEE-EEECS
T ss_pred --HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHHHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEE-EEeCC
Confidence 9999999998 8 9999863 899999999 3 2234566775 48888
Q ss_pred eEe
Q 018829 300 ELL 302 (350)
Q Consensus 300 ~iv 302 (350)
+.+
T Consensus 283 e~~ 285 (302)
T 3b9q_A 283 EAV 285 (302)
T ss_dssp SSG
T ss_pred CCh
Confidence 653
No 72
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.73 E-value=4.3e-20 Score=183.75 Aligned_cols=138 Identities=14% Similarity=0.089 Sum_probs=98.6
Q ss_pred CeeEeEEEeCCc--------------------EEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccc
Q 018829 96 MTLSDYDVPKTT--------------------SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 155 (350)
Q Consensus 96 L~~is~~I~~Ge--------------------~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 155 (350)
|++|||+|++|+ ++||+||||||||||+|+|+|+++ |++|+|.++|.+.+.
T Consensus 39 l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~-----p~~GsI~~~g~~~t~---- 109 (413)
T 1tq4_A 39 LNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN-----EEEGAAKTGVVEVTM---- 109 (413)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT-----TSTTSCCCCC----C----
T ss_pred hhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC-----ccCceEEECCeecce----
Confidence 666999999999 999999999999999999999999 999999999876530
Q ss_pred cccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceee
Q 018829 156 QEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 234 (350)
Q Consensus 156 ~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 234 (350)
.+++++.. .+..+ +.+++.+ +.. +..+.++++.+++.+.
T Consensus 110 ---------~~~v~q~~-~~~~ltv~D~~g~-----------~~~----------~~~~~~~L~~~~L~~~--------- 149 (413)
T 1tq4_A 110 ---------ERHPYKHP-NIPNVVFWDLPGI-----------GST----------NFPPDTYLEKMKFYEY--------- 149 (413)
T ss_dssp ---------CCEEEECS-SCTTEEEEECCCG-----------GGS----------SCCHHHHHHHTTGGGC---------
T ss_pred ---------eEEecccc-ccCCeeehHhhcc-----------cch----------HHHHHHHHHHcCCCcc---------
Confidence 13455542 12122 3333322 110 1235677888887651
Q ss_pred eecchhhhhccCCCCCCHH--HHHHHHHHHHh-------------------chhhcCCCC--------------------
Q 018829 235 FVVDGLAVLKSMEGDSDVE--KQYNQIVATTF-------------------NCPYLSFRD-------------------- 273 (350)
Q Consensus 235 ~vv~~~~~~~~~~~~LSGG--qrQRvaIArAL-------------------DEPts~Ld~-------------------- 273 (350)
+..+. ||+| |+||++||+|| ||||++||+
T Consensus 150 ---------~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~ 219 (413)
T 1tq4_A 150 ---------DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE 219 (413)
T ss_dssp ---------SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ---------CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 22333 9999 99999999997 999999764
Q ss_pred -C----ceEEEEec--h--HHHhcccEE
Q 018829 274 -D----KPVVVVTH--G--DLLSLTDRA 292 (350)
Q Consensus 274 -g----~TVIiiTH--~--~~~~~aDri 292 (350)
| .+|+++|| . .+..+||++
T Consensus 220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 220 NGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp TTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred cCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 1 45778898 3 378888888
No 73
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.73 E-value=4.7e-20 Score=167.41 Aligned_cols=34 Identities=29% Similarity=0.379 Sum_probs=32.9
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEE
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 143 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~ 143 (350)
++||+++|+||||||||||+++|+|+ + |++|+|.
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~-----p~~G~I~ 53 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-A-----LQSKQVS 53 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-H-----HHTTSCS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-C-----CcCCeee
Confidence 89999999999999999999999999 9 9999994
No 74
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.72 E-value=4.9e-20 Score=167.64 Aligned_cols=45 Identities=20% Similarity=0.366 Sum_probs=32.8
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 149 (350)
|++|||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.++
T Consensus 13 l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~------p--G~i~~-g~~~ 57 (218)
T 1z6g_A 13 GLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF------P--NYFYF-SVSC 57 (218)
T ss_dssp ---------CCCCEEEECSTTSSHHHHHHHHHHHS------T--TTEEE-CCCE
T ss_pred ccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC------C--CcEEE-eecc
Confidence 77799999999999999999999999999999977 4 88998 7654
No 75
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.71 E-value=3.8e-19 Score=159.78 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=26.4
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+.| .+|++||+++|+||||||||||+|+|+|+++
T Consensus 12 ~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 12 ARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---------CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 555 6999999999999999999999999999986
No 76
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.70 E-value=1.5e-19 Score=170.13 Aligned_cols=127 Identities=15% Similarity=0.117 Sum_probs=73.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccc-hhhhhHhh
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMI 186 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~ 186 (350)
.++|+||||||||||+|+|+|+.. |++|+|.++|.++.. ...++.+++++|+...+..+ |.+++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~-----~~~G~i~~~g~~i~~-------~~~~~~i~~v~q~~~~~~~ltv~d~~~-- 69 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV-----SRKASSWNREEKIPK-------TVEIKAIGHVIEEGGVKMKLTVIDTPG-- 69 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-----------------CCC-------CCSCCEEEESCC----CCEEEEECCCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-----CCCCccccCCcccCc-------ceeeeeeEEEeecCCCcCCceEEechh--
Confidence 589999999999999999999999 999999999987641 12233567777765554443 444443
Q ss_pred HHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh--
Q 018829 187 KLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-- 264 (350)
Q Consensus 187 ~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-- 264 (350)
++..... ....+.+.+++. .. +.+.++.+||||||||+++|||+
T Consensus 70 ---------~g~~~~~----~~~~~~i~~~~~----~~-----------------~~~~~~~~LS~G~~qrv~iaRal~~ 115 (270)
T 3sop_A 70 ---------FGDQINN----ENCWEPIEKYIN----EQ-----------------YEKFLKEEVNIARKKRIPDTRVHCC 115 (270)
T ss_dssp -----------CCSBC----TTCSHHHHHHHH----HH-----------------HHHHHHHHSCTTCCSSCCCCSCCEE
T ss_pred ---------hhhhccc----HHHHHHHHHHHH----HH-----------------HHhhhHHhcCcccchhhhhheeeee
Confidence 3322111 111122223222 11 34566778999999999999997
Q ss_pred ----chhhcCCCC-----------CceEEEEec
Q 018829 265 ----NCPYLSFRD-----------DKPVVVVTH 282 (350)
Q Consensus 265 ----DEPts~Ld~-----------g~TVIiiTH 282 (350)
|||+.+|++ ..+||+|.|
T Consensus 116 lllldep~~gL~~lD~~~l~~L~~~~~vI~Vi~ 148 (270)
T 3sop_A 116 LYFISPTGHSLRPLDLEFMKHLSKVVNIIPVIA 148 (270)
T ss_dssp EEEECCCSSSCCHHHHHHHHHHHTTSEEEEEET
T ss_pred eEEEecCCCcCCHHHHHHHHHHHhcCcEEEEEe
Confidence 999999763 577887777
No 77
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.68 E-value=5.6e-20 Score=179.14 Aligned_cols=189 Identities=11% Similarity=0.038 Sum_probs=114.7
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 152 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 152 (350)
++++++++++.|+.+ +.+ |+++ |+|.+|++++|+||||||||||+++|+|+.. |+.|.|.+.|++..
T Consensus 44 ~~i~~~~l~~~~~tg--~~a---ld~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~-----~~~g~i~~~G~~~~-- 110 (347)
T 2obl_A 44 DPLLRQVIDQPFILG--VRA---IDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS-----ADIIVLALIGERGR-- 110 (347)
T ss_dssp CSTTCCCCCSEECCS--CHH---HHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC-----CSEEEEEEESCCHH--
T ss_pred CCeeecccceecCCC--CEE---EEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCEEEEEEecccHH--
Confidence 568999999999743 345 5559 9999999999999999999999999999999 99999999886421
Q ss_pred ccccccccCCCccceeeccc--cccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCcccccc
Q 018829 153 YFLQEYTIPRGSNSFSLYDT--RSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 230 (350)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~--~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 230 (350)
+ +.. .+++ +... .....++.+...... ..+.. ....-.+.+.+...+ .
T Consensus 111 ----e--v~~-~i~~-~~~~~~~~~v~~~~~~~~~~~----~r~~~----------~~~~~~~ae~~~~~~--~------ 160 (347)
T 2obl_A 111 ----E--VNE-FLAL-LPQSTLSKCVLVVTTSDRPAL----ERMKA----------AFTATTIAEYFRDQG--K------ 160 (347)
T ss_dssp ----H--HHH-HHTT-SCHHHHTTEEEEEECTTSCHH----HHHHH----------HHHHHHHHHHHHTTT--C------
T ss_pred ----H--HHH-HHHh-hhhhhhhceEEEEECCCCCHH----HHHHH----------HHHHHHHHHHHHhcc--c------
Confidence 0 000 0000 0000 000001111100000 00000 000000111111111 1
Q ss_pred ceeeeecchhhhhccCCCCCCHHHHHHHHHHHHhchh-hcCCCC------------------Cc-----eEEEEechHHH
Q 018829 231 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP-YLSFRD------------------DK-----PVVVVTHGDLL 286 (350)
Q Consensus 231 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArALDEP-ts~Ld~------------------g~-----TVIiiTH~~~~ 286 (350)
+ |..++ ..+..||+|| ||+++| +-+.| ++++|+ |. ||+++||+.-.
T Consensus 161 ~-vl~~l-------d~~~~lS~g~-r~v~la-l~~p~~t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~~ 230 (347)
T 2obl_A 161 N-VLLMM-------DSVTRYARAA-RDVGLA-SGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVND 230 (347)
T ss_dssp E-EEEEE-------ETHHHHHHHH-HHHHHH-TTCCCCBTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCCC
T ss_pred c-HHHHH-------hhHHHHHHHH-HHHHHH-cCCCCcccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCCC
Confidence 1 11222 3456899999 899999 33555 466542 55 89999995337
Q ss_pred hcccEEEEEecCCeEeecCCccccccCCC
Q 018829 287 SLTDRARIRTYLGELLGIPPAKQIFDIPE 315 (350)
Q Consensus 287 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~ 315 (350)
.+||++. +|.+|+|+..++..++...|.
T Consensus 231 ~i~d~v~-~i~dG~Ivl~~~l~~~~~~Pa 258 (347)
T 2obl_A 231 PIGDEVR-SILDGHIVLTRELAEENHFPA 258 (347)
T ss_dssp HHHHHHH-HHCSEEEEBCHHHHTTTCSSC
T ss_pred hhhhheE-EeeCcEEEEeCCHHHcCCCCC
Confidence 7899996 599999999999888766553
No 78
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.68 E-value=8.1e-19 Score=171.66 Aligned_cols=157 Identities=12% Similarity=0.082 Sum_probs=104.6
Q ss_pred eEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCcc-cccccc-CCCccceeecccc-c
Q 018829 98 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF-LQEYTI-PRGSNSFSLYDTR-S 174 (350)
Q Consensus 98 ~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~-~~~~~~-~~~~~~~~~~d~~-~ 174 (350)
.+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.|+..... .|...+ .+..+++++|+.. .
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~-----~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~ 223 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK-----NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 223 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSC
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc-----ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEeccccc
Confidence 4899999999999999999999999999999999 999999999988642100 000011 0123445544432 1
Q ss_pred cccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHH
Q 018829 175 LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 254 (350)
Q Consensus 175 ~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGq 254 (350)
+ ...++.+++.++... ..+ ..+++.+|+.+ ..++++.+||
T Consensus 224 ~----------p~~tv~e~l~~~~~~--~~d--------~~lldt~Gl~~-----------------~~~~~~~eLS--- 263 (359)
T 2og2_A 224 K----------AATVLSKAVKRGKEE--GYD--------VVLCDTSGRLH-----------------TNYSLMEELI--- 263 (359)
T ss_dssp C----------HHHHHHHHHHHHHHT--TCS--------EEEEECCCCSS-----------------CCHHHHHHHH---
T ss_pred C----------hhhhHHHHHHHHHhC--CCH--------HHHHHhcCCCh-----------------hhhhHHHHHH---
Confidence 1 122555666543221 000 12344566655 2356777899
Q ss_pred HHHHHHHHHh-----------chhhcCCCC-----------CceEEEEec-h----------HHHhcccEEEEEecCCeE
Q 018829 255 QYNQIVATTF-----------NCPYLSFRD-----------DKPVVVVTH-G----------DLLSLTDRARIRTYLGEL 301 (350)
Q Consensus 255 rQRvaIArAL-----------DEPts~Ld~-----------g~TVIiiTH-~----------~~~~~aDri~v~l~~G~i 301 (350)
+||++||||| | ||+++|. +.|+|++|| + .+...+..|. ++..|+.
T Consensus 264 kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~-~ig~Ge~ 341 (359)
T 2og2_A 264 ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVK-FIGVGEA 341 (359)
T ss_dssp HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEE-EEECSSS
T ss_pred HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHHHHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEE-EEeCCCC
Confidence 9999999998 8 9999863 899999999 3 2234566784 4777764
No 79
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.67 E-value=4.7e-16 Score=166.46 Aligned_cols=88 Identities=19% Similarity=0.192 Sum_probs=72.9
Q ss_pred HHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh-----------chhhcCCCC-----
Q 018829 210 RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD----- 273 (350)
Q Consensus 210 ~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-----------DEPts~Ld~----- 273 (350)
.+++. .+..+|+... .+++.+.+|||||+||++||+|| ||||++|++
T Consensus 357 ~~rl~-~L~~vGL~~l----------------~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~ 419 (842)
T 2vf7_A 357 VKRLD-VLLHLGLGYL----------------GLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEA 419 (842)
T ss_dssp HHHHH-HHHHTTCTTS----------------BTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHH
T ss_pred HHHHH-HHHhCCCCcC----------------CccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHH
Confidence 34444 5778888752 14889999999999999999999 999999963
Q ss_pred -----------CceEEEEec-hHHHhcccEEEEEe------cCCeEeecCCccccccCCC
Q 018829 274 -----------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPE 315 (350)
Q Consensus 274 -----------g~TVIiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~ 315 (350)
|.|||+|+| -.+...||+|+ +| ++|+++..|+++++...+.
T Consensus 420 L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii-~lgpgaG~~~G~iv~~g~~~~~~~~~~ 478 (842)
T 2vf7_A 420 LLSALENLKRGGNSLFVVEHDLDVIRRADWLV-DVGPEAGEKGGEILYSGPPEGLKHVPE 478 (842)
T ss_dssp HHHHHHHHHTTTCEEEEECCCHHHHTTCSEEE-EECSSSGGGCCSEEEEECGGGGGGCTT
T ss_pred HHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEE-EeCCCcccCCCEEEEecCHHHHHhchH
Confidence 899999999 34556899996 59 7999999999999987654
No 80
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.66 E-value=2.5e-20 Score=179.09 Aligned_cols=172 Identities=11% Similarity=-0.068 Sum_probs=111.6
Q ss_pred CCcEEEEEEEEEECCCceEEecCCCeeEeEE-----------------------EeCCcEEEEEcCCCChHHHHHHHHHh
Q 018829 72 GSLTDAKNKILSYTPGAWIENVGGMTLSDYD-----------------------VPKTTSLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 72 ~~~l~i~~l~~~y~~~~~~~~l~~L~~is~~-----------------------I~~Ge~iaIvGpnGsGKSTLl~~I~g 128 (350)
...|++++|++.|.+ . +++++|. +++|+++||+||||||||||+++|+|
T Consensus 41 ~~~i~~~~v~~~y~p---~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 41 GEQIDLLEVEEVYLP---L-----ARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp TCCCCHHHHHHTHHH---H-----HHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEeeehhhhhhh---H-----HHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHh
Confidence 346899999999952 2 3445553 89999999999999999999999999
Q ss_pred ccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHH
Q 018829 129 VFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSS 208 (350)
Q Consensus 129 l~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~ 208 (350)
+++ |..|. ..+++++|+...+ +.++.+|+.+... ...+...
T Consensus 113 ll~-----~~~G~---------------------~~v~~v~qd~~~~-----------~~t~~e~~~~~~~--~g~~~~~ 153 (312)
T 3aez_A 113 LLA-----RWDHH---------------------PRVDLVTTDGFLY-----------PNAELQRRNLMHR--KGFPESY 153 (312)
T ss_dssp HHH-----TSTTC---------------------CCEEEEEGGGGBC-----------CHHHHHHTTCTTC--TTSGGGB
T ss_pred hcc-----ccCCC---------------------CeEEEEecCccCC-----------cccHHHHHHHHHh--cCCChHH
Confidence 999 86553 0235666654332 2244455443110 1112223
Q ss_pred HHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh---------chhhcCCC---C---
Q 018829 209 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR---D--- 273 (350)
Q Consensus 209 ~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPts~Ld---~--- 273 (350)
..+.+.++++.++ ... .+..+..|||||+||+++|+|+ |||++.++ .
T Consensus 154 d~~~~~~~L~~l~-~~~-----------------~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~~l~ 215 (312)
T 3aez_A 154 NRRALMRFVTSVK-SGS-----------------DYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTLMVS 215 (312)
T ss_dssp CHHHHHHHHHHHH-TTC-----------------SCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSCCGG
T ss_pred HHHHHHHHHHHhC-CCc-----------------ccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchHHHH
Confidence 3456667777777 431 2456679999999999999998 99999874 1
Q ss_pred ---CceEEEEec--h-HHHhcccEEEEEecCCeEeecCCccccccC
Q 018829 274 ---DKPVVVVTH--G-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 313 (350)
Q Consensus 274 ---g~TVIiiTH--~-~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 313 (350)
+.+ |+|+| + ...+..+|.. .+.+++ ..+++.++.+
T Consensus 216 ~~~D~~-I~V~a~~~~~~~R~i~R~~-~~rd~~---~r~~~~~~~~ 256 (312)
T 3aez_A 216 DLFDFS-LYVDARIEDIEQWYVSRFL-AMRTTA---FADPESHFHH 256 (312)
T ss_dssp GGCSEE-EEEEECHHHHHHHHHHHHH-HHTTTG---GGSTTSTTGG
T ss_pred HhcCcE-EEEECCHHHHHHHHHHHHH-HHHhcc---ccCcchhhhc
Confidence 444 55566 3 3345677773 355654 2344455543
No 81
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.66 E-value=7.2e-20 Score=187.01 Aligned_cols=64 Identities=17% Similarity=0.170 Sum_probs=51.9
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeE-EEeCCcEEEEEcCCCChHHHHHHH--HHhccCCCCCCCcccEEEECCEe
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDY-DVPKTTSLLLIGPKGSGKSSLVNR--ISKVFENDKFASERAQVTYNSSV 148 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~-~I~~Ge~iaIvGpnGsGKSTLl~~--I~gl~~~~~~~p~~G~I~i~G~~ 148 (350)
+++.+++.+ |..+ +++ |+++|| .|++|++++|+||||||||||+++ ++|+++ |++|.|+++|.+
T Consensus 12 ~~~~~~~~~-~~~g--~~~---Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~-----~~~g~i~v~g~~ 78 (525)
T 1tf7_A 12 NSEHQAIAK-MRTM--IEG---FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE-----FDEPGVFVTFEE 78 (525)
T ss_dssp --CCSSCCE-ECCC--CTT---HHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH-----HCCCEEEEESSS
T ss_pred Ccccccccc-ccCC--chh---HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-----CCCCEEEEEEeC
Confidence 455566644 4433 345 666999 999999999999999999999999 789999 999999999876
No 82
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.65 E-value=1.4e-17 Score=147.44 Aligned_cols=49 Identities=8% Similarity=-0.051 Sum_probs=40.6
Q ss_pred hccCCCCCCHHHHHHHHHHHH-----h---------ch--hhcCCCC-------------CceEEEEec-----hHHHhc
Q 018829 243 LKSMEGDSDVEKQYNQIVATT-----F---------NC--PYLSFRD-------------DKPVVVVTH-----GDLLSL 288 (350)
Q Consensus 243 ~~~~~~~LSGGqrQRvaIArA-----L---------DE--Pts~Ld~-------------g~TVIiiTH-----~~~~~~ 288 (350)
.++++..||||||||++|||| + || |++++|+ +.|+|++|| ..+..+
T Consensus 70 ~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i 149 (178)
T 1ye8_A 70 VGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEI 149 (178)
T ss_dssp ETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHH
T ss_pred ccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHH
Confidence 477888999999999999996 6 99 9999763 667999996 466677
Q ss_pred ccE
Q 018829 289 TDR 291 (350)
Q Consensus 289 aDr 291 (350)
|+|
T Consensus 150 ~~r 152 (178)
T 1ye8_A 150 RRL 152 (178)
T ss_dssp HTC
T ss_pred Hhc
Confidence 776
No 83
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.61 E-value=4.4e-15 Score=145.23 Aligned_cols=62 Identities=8% Similarity=-0.055 Sum_probs=54.1
Q ss_pred cCCC-CCCHHHHHHHHHHHHh------------------chhhcCCCC-------------CceEEEEec-hHHHhcccE
Q 018829 245 SMEG-DSDVEKQYNQIVATTF------------------NCPYLSFRD-------------DKPVVVVTH-GDLLSLTDR 291 (350)
Q Consensus 245 ~~~~-~LSGGqrQRvaIArAL------------------DEPts~Ld~-------------g~TVIiiTH-~~~~~~aDr 291 (350)
+.+. .||||||||++||++| |||+++||+ +.|+|++|| +. .||+
T Consensus 260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~~~---~~~~ 336 (359)
T 2o5v_A 260 FPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTELAP---GAAL 336 (359)
T ss_dssp EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSCCT---TCSE
T ss_pred cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEeccc---cCCE
Confidence 4455 6999999999999998 999999984 579999999 43 8999
Q ss_pred EEEEecCCeEeecCCcccc
Q 018829 292 ARIRTYLGELLGIPPAKQI 310 (350)
Q Consensus 292 i~v~l~~G~iv~~g~~~~l 310 (350)
++ +|++|+++..|+++++
T Consensus 337 i~-~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 337 TL-RAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EE-EEETTEEEECCCTTTS
T ss_pred EE-EEECCEEEecCCHHHH
Confidence 95 5999999999999877
No 84
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.60 E-value=1.4e-17 Score=161.07 Aligned_cols=48 Identities=15% Similarity=0.325 Sum_probs=44.7
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEe
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 148 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 148 (350)
++++||++++|++++|+||||||||||+++|+|+++ |++|.|.++|.+
T Consensus 161 l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~-----~~~g~i~i~~~~ 208 (330)
T 2pt7_A 161 ISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP-----KEERIISIEDTE 208 (330)
T ss_dssp HHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC-----TTSCEEEEESSC
T ss_pred HhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCCcEEEECCee
Confidence 556999999999999999999999999999999999 999999998743
No 85
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.55 E-value=1.5e-15 Score=143.26 Aligned_cols=46 Identities=13% Similarity=0.201 Sum_probs=41.6
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCccc-EEEECC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNS 146 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G-~I~i~G 146 (350)
|+++++.+++|++++|+||||||||||+++|+|.+. |++| .|.+.+
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~-----~~~G~~v~~~~ 71 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG-----TAMGKKVGLAM 71 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH-----HTSCCCEEEEE
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH-----HHcCCeEEEEe
Confidence 777999999999999999999999999999999998 8878 676543
No 86
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.51 E-value=6e-15 Score=159.16 Aligned_cols=92 Identities=16% Similarity=0.147 Sum_probs=75.9
Q ss_pred HHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh-----------chhhcCCCC--------
Q 018829 213 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD-------- 273 (350)
Q Consensus 213 i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-----------DEPts~Ld~-------- 273 (350)
..++|..+|+... .+++.+.+||||||||++||||| ||||++||+
T Consensus 444 ~~~~L~~vgL~~l----------------~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~ 507 (916)
T 3pih_A 444 RLEFLVDVGLEYL----------------TLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIK 507 (916)
T ss_dssp HHHHHHTTTCTTC----------------BTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHH
T ss_pred HHHHHHHcCCccc----------------cccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHH
Confidence 4567888999752 14789999999999999999999 999999874
Q ss_pred --------CceEEEEec-hHHHhcccEEEEEe------cCCeEeecCCccccccCCCCCChHH
Q 018829 274 --------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPEN 321 (350)
Q Consensus 274 --------g~TVIiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~ 321 (350)
|.|||+||| ..+...||+|+ +| ++|++++.|++++++..+..+.+..
T Consensus 508 ~L~~L~~~G~TvivVtHd~~~~~~aD~ii-~lgpgag~~~G~iv~~G~~~e~~~~~~~~~~~~ 569 (916)
T 3pih_A 508 TLKKLRDLGNTVIVVEHDEEVIRNADHII-DIGPGGGTNGGRVVFQGTVDELLKNPDSSLTGE 569 (916)
T ss_dssp HHHHTTTTTCEEEEECCCHHHHHTCSEEE-EEESSSGGGCSEEEEEECHHHHHHSCTTCHHHH
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHhCCEEE-EEcCCcccCCCEEEEeechhhhhcCchhcchhh
Confidence 899999999 34445699996 59 9999999999999988776554433
No 87
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.51 E-value=1.8e-15 Score=165.25 Aligned_cols=54 Identities=17% Similarity=0.242 Sum_probs=41.5
Q ss_pred CCcEEEEE-----EEEEECCCceEEecCCCeeEeEEEeC-------CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 72 GSLTDAKN-----KILSYTPGAWIENVGGMTLSDYDVPK-------TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 72 ~~~l~i~~-----l~~~y~~~~~~~~l~~L~~is~~I~~-------Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++|++++ |++.|.++..+ ++|++|++++ |++++|+||||||||||+|+| |++.
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v-----~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFI-----PNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCC-----CEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred CceEEEEeccccEEEEEecCCceE-----eeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH
Confidence 35799999 99999433334 7779999987 999999999999999999999 9987
No 88
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.50 E-value=2.1e-13 Score=131.75 Aligned_cols=55 Identities=11% Similarity=0.011 Sum_probs=44.5
Q ss_pred hhccCCCCCCHHHHHH------HHHHHHh---------chhhcCCCC----------------CceEEEEec-hHHHhcc
Q 018829 242 VLKSMEGDSDVEKQYN------QIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSLT 289 (350)
Q Consensus 242 ~~~~~~~~LSGGqrQR------vaIArAL---------DEPts~Ld~----------------g~TVIiiTH-~~~~~~a 289 (350)
..++++.+|||||||| +++|+|| ||||++||+ +.|||+||| ..+...|
T Consensus 241 ~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~ 320 (339)
T 3qkt_A 241 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAA 320 (339)
T ss_dssp TEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGC
T ss_pred cCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhC
Confidence 3477889999999994 5666666 999999874 679999999 5667889
Q ss_pred cEEEEEec
Q 018829 290 DRARIRTY 297 (350)
Q Consensus 290 Dri~v~l~ 297 (350)
|++++ |.
T Consensus 321 d~~~~-l~ 327 (339)
T 3qkt_A 321 DHVIR-IS 327 (339)
T ss_dssp SEEEE-EE
T ss_pred CEEEE-EE
Confidence 99954 64
No 89
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.50 E-value=1.5e-14 Score=147.55 Aligned_cols=126 Identities=14% Similarity=0.190 Sum_probs=86.4
Q ss_pred eEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccE-E-EECCEeCCCCccccccccCCCccceeecccccccc
Q 018829 100 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQ-V-TYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSD 177 (350)
Q Consensus 100 s~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~-I-~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 177 (350)
+..|++|++++|+||||||||||+++|+|+.. +. |+ + .+ .+++...
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~-----~~-G~~vi~~-----------------------~~ee~~~--- 322 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENAC-----AN-KERAILF-----------------------AYEESRA--- 322 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHH-----TT-TCCEEEE-----------------------ESSSCHH---
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-----hC-CCCEEEE-----------------------EEeCCHH---
Confidence 34899999999999999999999999999998 64 53 2 22 2222110
Q ss_pred chhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHH
Q 018829 178 DASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYN 257 (350)
Q Consensus 178 ~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQR 257 (350)
.+.... . .++ .+ . .+ +...|+.. +.+.+|.+|||||+||
T Consensus 323 ------~l~~~~--~--~~g------~~---~----~~-~~~~g~~~-----------------~~~~~p~~LS~g~~q~ 361 (525)
T 1tf7_A 323 ------QLLRNA--Y--SWG------MD---F----EE-MERQNLLK-----------------IVCAYPESAGLEDHLQ 361 (525)
T ss_dssp ------HHHHHH--H--TTS------CC---H----HH-HHHTTSEE-----------------ECCCCGGGSCHHHHHH
T ss_pred ------HHHHHH--H--HcC------CC---H----HH-HHhCCCEE-----------------EEEeccccCCHHHHHH
Confidence 000000 0 010 11 0 11 22344443 3467788999999999
Q ss_pred HHHHHHh---------chhhcCCCC---------------------CceEEEEechH------------HHhcccEEEEE
Q 018829 258 QIVATTF---------NCPYLSFRD---------------------DKPVVVVTHGD------------LLSLTDRARIR 295 (350)
Q Consensus 258 vaIArAL---------DEPts~Ld~---------------------g~TVIiiTH~~------------~~~~aDri~v~ 295 (350)
+++|+++ | |+++||. |+|||++||+. +..+||+|+ +
T Consensus 362 ~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi-~ 439 (525)
T 1tf7_A 362 IIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTII-L 439 (525)
T ss_dssp HHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEE-E
T ss_pred HHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEE-E
Confidence 9999998 9 9998652 89999999943 357899996 5
Q ss_pred ecCCe
Q 018829 296 TYLGE 300 (350)
Q Consensus 296 l~~G~ 300 (350)
|++|+
T Consensus 440 L~~ge 444 (525)
T 1tf7_A 440 LQYVE 444 (525)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88886
No 90
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.49 E-value=7e-16 Score=147.59 Aligned_cols=41 Identities=17% Similarity=0.397 Sum_probs=39.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
+|++++|+||||||||||+++|+|+++ |++|+|.+.|.|+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~-----~~~g~V~l~g~D~~ 141 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-----NLGKKVMFCAGDTF 141 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH-----TTTCCEEEECCCCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-----hcCCEEEEEeecCC
Confidence 689999999999999999999999999 99999999998874
No 91
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.47 E-value=3.9e-16 Score=152.18 Aligned_cols=176 Identities=9% Similarity=0.016 Sum_probs=98.8
Q ss_pred CeeEeEEEeC--CcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcc----cEEEECC----EeCCCCccccccccCCCcc
Q 018829 96 MTLSDYDVPK--TTSLLLIGPKGSGKSSLVNRISKVFENDKFASER----AQVTYNS----SVGDGTYFLQEYTIPRGSN 165 (350)
Q Consensus 96 L~~is~~I~~--Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~----G~I~i~G----~~i~~~~~~~~~~~~~~~~ 165 (350)
.+.|+++|++ |+.++|+||||||||||+++|+|++. |++ |++.+++ .++.
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~-----~~~~~e~G~i~i~~~~~~~~~~--------------- 217 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN-----TTSAWEYGREFVFEKLGGDEQA--------------- 217 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT-----CEEECCTTHHHHHHSSSSCTTS---------------
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC-----CCcchhhHHHHHHhhcCCCccc---------------
Confidence 3459999999 99999999999999999999999999 998 8877642 2110
Q ss_pred ceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHH---------HHHHHHHHHHcCCCCccccccceeeee
Q 018829 166 SFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSL---------RNRMRCKAHKIGCEPSVIRKVNFVIFV 236 (350)
Q Consensus 166 ~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~---------~~~i~~~l~~~gl~~~~~~~~~~~~~v 236 (350)
+...+. ..+.+++|+..++..++.+|+.++..... .... ...+..++.. ...+ +.+
T Consensus 218 -~~~~~~-~~I~~~~q~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~--~~~~--------lll 282 (365)
T 1lw7_A 218 -MQYSDY-PQMALGHQRYIDYAVRHSHKIAFIDTDFI---TTQAFCIQYEGKAHPFLDSMIKE--YPFD--------VTI 282 (365)
T ss_dssp -SCTTTH-HHHHHHHHHHHHHHHHHCSSEEEESSCHH---HHHHHHHHHHSCCCHHHHHHHHH--SCCS--------EEE
T ss_pred -CChhHH-HHHHHHHHHHHHHHHhccCCEEEEeCCch---HHHHHHHHHcCCCCHHHHHHHhh--cCCC--------EEE
Confidence 111111 11334556655555566777765321000 0000 0011111111 1111 133
Q ss_pred cchhhh-hccCCCCCCHHHHHHHHHHHHhchhhcCCCCCceEEEEec-hHHHhcccEEEEEecCCeEeecCCccccc
Q 018829 237 VDGLAV-LKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIF 311 (350)
Q Consensus 237 v~~~~~-~~~~~~~LSGGqrQRvaIArALDEPts~Ld~g~TVIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~ 311 (350)
+|++.. .......+|+||+||.+|+++|.+-.. ..+.+||+++| ....++++++.+ +++ ++..++++++.
T Consensus 283 LdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~--~~~~~ililde~~~~~r~~~~i~~-i~~--~l~~~~~~~~~ 354 (365)
T 1lw7_A 283 LLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLD--KYKVPYIEIESPSYLDRYNQVKAV-IEK--VLNEEEISELQ 354 (365)
T ss_dssp EEECCCC-----------CCSHHHHHHHHHHHHH--GGGCCCEEEECSSHHHHHHHHHHH-HHH--HTSCCCCSSCC
T ss_pred ECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHH--HcCCCEEEeCCCCHHHHHHHHHHH-HHH--HhcccchhHhh
Confidence 454210 001223589999999999999943321 02567999999 677788888843 553 56666666653
No 92
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.46 E-value=3.3e-16 Score=149.38 Aligned_cols=144 Identities=11% Similarity=0.103 Sum_probs=62.8
Q ss_pred EEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhc-cCCCCCCCcccEEEECCEeCCCCcccc
Q 018829 78 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV-FENDKFASERAQVTYNSSVGDGTYFLQ 156 (350)
Q Consensus 78 ~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl-~~~~~~~p~~G~I~i~G~~i~~~~~~~ 156 (350)
+||+++|+. ..+ +++++|+| +|+||||||||||+++|.|. .. |++| +.++|.++..+
T Consensus 2 ~~l~~~~~~---~~~---l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~-----~~~g-i~~~g~~~~~t---- 59 (301)
T 2qnr_A 2 SNLPNQVHR---KSV---KKGFEFTL------MVVGESGLGKSTLINSLFLTDLY-----PERV-ISGAAEKIERT---- 59 (301)
T ss_dssp ----------------------CEEE------EEEEETTSSHHHHHHHHHC-----------------------------
T ss_pred CCCcceECC---EEE---EcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc-----CCCC-cccCCcccCCc----
Confidence 478899964 245 56699998 99999999999999999997 77 8889 88888765411
Q ss_pred ccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeee
Q 018829 157 EYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIF 235 (350)
Q Consensus 157 ~~~~~~~~~~~~~~d~~~~~~~-v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~ 235 (350)
......++.++.......+ +.+++.+.... . . .+..+..+.. + .+
T Consensus 60 ---~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~--~----------~--~e~~~~l~~~-l-----~~----------- 105 (301)
T 2qnr_A 60 ---VQIEASTVEIEERGVKLRLTVVDTPGYGDAI--N----------C--RDCFKTIISY-I-----DE----------- 105 (301)
T ss_dssp --------CEEEEC---CCEEEEEEEEC-------------------------CTTHHHH-H-----HH-----------
T ss_pred ---ceEeeEEEEecCCCcccCcchhhhhhhhhhc--C----------c--HHHHHHHHHH-H-----HH-----------
Confidence 1112234555543333232 44443331100 0 0 0000000111 1 11
Q ss_pred ecchhhhhccCCCCCCHHHHHHHHHHHHh-----chhhcC-CCC-------------CceEEEEech
Q 018829 236 VVDGLAVLKSMEGDSDVEKQYNQIVATTF-----NCPYLS-FRD-------------DKPVVVVTHG 283 (350)
Q Consensus 236 vv~~~~~~~~~~~~LSGGqrQRvaIArAL-----DEPts~-Ld~-------------g~TVIiiTH~ 283 (350)
..++++.++|||||||+++|||+ |||+++ |++ +.++|+.+||
T Consensus 106 ------~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~~~~~iilV~~K~D 166 (301)
T 2qnr_A 106 ------QFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKAD 166 (301)
T ss_dssp ------HHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHTTTSCEEEEECCGG
T ss_pred ------HHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHHhcCCEEEEEEeCC
Confidence 23566778999999999999975 999875 653 5677777774
No 93
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.46 E-value=1.1e-14 Score=136.40 Aligned_cols=48 Identities=19% Similarity=0.213 Sum_probs=44.4
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCc-ccEEEECCEeCC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNSSVGD 150 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~-~G~I~i~G~~i~ 150 (350)
|+++| +++|++++|+||||||||||+++|+|+++ |+ +|+|.++|.++.
T Consensus 17 l~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~-----~~~~G~I~~~g~~i~ 65 (261)
T 2eyu_A 17 VLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN-----QTKSYHIITIEDPIE 65 (261)
T ss_dssp HHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH-----HHCCCEEEEEESSCC
T ss_pred HHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC-----CCCCCEEEEcCCcce
Confidence 67798 89999999999999999999999999999 98 999999987764
No 94
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.45 E-value=3.1e-15 Score=137.66 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=26.8
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
|+++||++++|+++||+||||||||||+++|+|++.
T Consensus 15 l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 15 TENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp --------CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 566999999999999999999999999999999873
No 95
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.45 E-value=6.6e-14 Score=125.56 Aligned_cols=164 Identities=10% Similarity=0.052 Sum_probs=83.8
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCC-----cccEEEECCEeCCCCccccccccCCCccceeeccccccc
Q 018829 102 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-----ERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLS 176 (350)
Q Consensus 102 ~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p-----~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~ 176 (350)
-|++|++++|+||||||||||+++|+|++... + ..+.+++++.+.. .. ...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~---~~~g~~~~~~i~~~~~~~~----------~~-----------~~i 76 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLP---PEEGGLNGSVIWIDTENTF----------RP-----------ERI 76 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSC---GGGTCCSCEEEEEESSSCC----------CH-----------HHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcc---cccCCCCCEEEEEECCCCC----------CH-----------HHH
Confidence 58999999999999999999999999976510 2 3336666653321 00 011
Q ss_pred cchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCH----
Q 018829 177 DDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV---- 252 (350)
Q Consensus 177 ~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSG---- 252 (350)
..+.|+..+.+.++.+|+.+....... ......+.+.+++..+--. ..+.-++++|+++.. ....+|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~llilDe~~~~--l~~~~~~~~~~ 148 (231)
T 4a74_A 77 REIAQNRGLDPDEVLKHIYVARAFNSN-HQMLLVQQAEDKIKELLNT-----DRPVKLLIVDSLTSH--FRSEYIGRGAL 148 (231)
T ss_dssp HHHHHHTTSCHHHHHHTEEEEECCSHH-HHHHHHHHHHHHHHHHTTS-----SSCEEEEEEETSSHH--HHHHSCSTTHH
T ss_pred HHHHHHcCCCHHHHhhcEEEEecCChH-HHHHHHHHHHHHHHHhccc-----CCceeEEEECChHHH--hccccCCCcch
Confidence 223444444444666776553221100 0011122333333321100 012235678887542 2334554
Q ss_pred HHHHHH--HHHHHhchhhcCCCCCceEEEEec--hH----HHhcccEEEEEecCCe
Q 018829 253 EKQYNQ--IVATTFNCPYLSFRDDKPVVVVTH--GD----LLSLTDRARIRTYLGE 300 (350)
Q Consensus 253 GqrQRv--aIArALDEPts~Ld~g~TVIiiTH--~~----~~~~aDri~v~l~~G~ 300 (350)
+|||+. .+.+.|-+-. -..|+|||++|| .. +...||+++ +|++|+
T Consensus 149 ~~r~~~~~~~~~~l~~~~--~~~g~tvi~vtH~~~~~g~~~~~~~d~~l-~l~~~~ 201 (231)
T 4a74_A 149 AERQQKLAKHLADLHRLA--NLYDIAVFVTNQVQANGGHILAHSATLRV-YLRKGK 201 (231)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHTCEEEEEEECC---------CCSEEE-EEEECT
T ss_pred hHHHHHHHHHHHHHHHHH--HHCCCeEEEEeecccCcchhhHhhceEEE-EEEecC
Confidence 344332 3333331100 013789999999 33 678899995 587753
No 96
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.44 E-value=7e-14 Score=151.33 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=29.9
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHH
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRI 126 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I 126 (350)
++|++|++++|++++|+||||||||||+|+|
T Consensus 652 ~ndisl~~~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 652 PNDVYFEKDKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp CEEEEEETTTBCEEEEECCTTSSHHHHHHHH
T ss_pred cccceeecCCCeEEEEECCCCCCHHHHHHHH
Confidence 6779999999999999999999999999999
No 97
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.43 E-value=2e-14 Score=127.31 Aligned_cols=62 Identities=10% Similarity=0.132 Sum_probs=35.5
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEE
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 144 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i 144 (350)
+|+++|++|.|+. .+ +++ |.+++|+.++|+|+||||||||+|.|+|........|+.|.+.+
T Consensus 3 ~l~~~~~~~~~~~----~~---l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~ 64 (210)
T 1pui_A 3 NLNYQQTHFVMSA----PD---IRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL 64 (210)
T ss_dssp --------CEEEE----SS---GGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred chhhhhhhheeec----CC---HhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence 5899999999952 22 666 88999999999999999999999999998710000177787654
No 98
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.41 E-value=2.2e-13 Score=146.84 Aligned_cols=90 Identities=18% Similarity=0.285 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh-----------chhhcCCCC---
Q 018829 208 SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD--- 273 (350)
Q Consensus 208 ~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-----------DEPts~Ld~--- 273 (350)
++.+++ ++|..+||... .+++.+.+|||||+||++||++| ||||++|++
T Consensus 480 ei~~Rl-~~L~~vGL~~l----------------~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~ 542 (972)
T 2r6f_A 480 EIRDRL-GFLQNVGLDYL----------------TLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDN 542 (972)
T ss_dssp HHHHHH-HHHHHHTCTTS----------------BSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGH
T ss_pred HHHHHH-HHhhhCCCCcc----------------ccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHH
Confidence 445555 46899999752 14889999999999999999998 999999874
Q ss_pred -------------CceEEEEec-hHHHhcccEEEEEe------cCCeEeecCCccccccCCC
Q 018829 274 -------------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPE 315 (350)
Q Consensus 274 -------------g~TVIiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~ 315 (350)
|.|||+|+| .+....||+|+ +| ++|++++.|++++++..+.
T Consensus 543 ~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi-~LgpgaG~~gG~iv~~G~~~e~~~~~~ 603 (972)
T 2r6f_A 543 DRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLI-DIGPGAGIHGGEVVAAGTPEEVMNDPN 603 (972)
T ss_dssp HHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEE-EECSSSGGGCCSEEEEECTTTTTTCTT
T ss_pred HHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEE-EeCCCccCCCCEEEEecCHHHHHhhhH
Confidence 899999999 33456799996 58 7999999999999987643
No 99
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.40 E-value=1.8e-13 Score=139.40 Aligned_cols=56 Identities=13% Similarity=0.055 Sum_probs=46.1
Q ss_pred ccCCCCC-CHHHHHHHHHHHHh-----------chhhcCCCC---------------CceEEEEec-hHHHhcccEEEEE
Q 018829 244 KSMEGDS-DVEKQYNQIVATTF-----------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIR 295 (350)
Q Consensus 244 ~~~~~~L-SGGqrQRvaIArAL-----------DEPts~Ld~---------------g~TVIiiTH-~~~~~~aDri~v~ 295 (350)
.+++..| |||||||++||||| |||+++||. +.|||+||| -.+...||+++ +
T Consensus 391 ~~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~-~ 469 (517)
T 4ad8_A 391 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHY-K 469 (517)
T ss_dssp CCBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEE-E
T ss_pred cccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEE-E
Confidence 3566777 99999999999998 999999985 799999999 34455799996 5
Q ss_pred ecCCe
Q 018829 296 TYLGE 300 (350)
Q Consensus 296 l~~G~ 300 (350)
|+++.
T Consensus 470 ~~~~~ 474 (517)
T 4ad8_A 470 VEKQV 474 (517)
T ss_dssp EECCE
T ss_pred Eeccc
Confidence 86653
No 100
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.40 E-value=5.7e-14 Score=127.55 Aligned_cols=60 Identities=17% Similarity=0.184 Sum_probs=43.7
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeE--EEeCCcEEEEEcCCCChHHHHHHHHH--hccCCCCCCCcccEEEECCEe
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDY--DVPKTTSLLLIGPKGSGKSSLVNRIS--KVFENDKFASERAQVTYNSSV 148 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~--~I~~Ge~iaIvGpnGsGKSTLl~~I~--gl~~~~~~~p~~G~I~i~G~~ 148 (350)
++++++++..|+. |+.+ + .|++|++++|+||||||||||+++|+ |+.. +..|.+.+++..
T Consensus 6 ~~~~~~i~tg~~~---------lD~~-l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~-----~~~~~~~~~~~~ 69 (251)
T 2ehv_A 6 YQPVRRVKSGIPG---------FDEL-IEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE-----YGEPGVFVTLEE 69 (251)
T ss_dssp --CCCEECCSCTT---------TGGG-TTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHH-----HCCCEEEEESSS
T ss_pred ccccceeecCCHh---------HHHH-hcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-----CCCeEEEEEccC
Confidence 4566666655543 3223 2 68999999999999999999999999 7756 667777776643
No 101
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.36 E-value=3.6e-12 Score=126.70 Aligned_cols=52 Identities=12% Similarity=0.035 Sum_probs=43.3
Q ss_pred cCCCCCCHHHHHHHHHHHHh-------------chhhcCCCC----------------CceEEEEec-hHHHhcccEEEE
Q 018829 245 SMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARI 294 (350)
Q Consensus 245 ~~~~~LSGGqrQRvaIArAL-------------DEPts~Ld~----------------g~TVIiiTH-~~~~~~aDri~v 294 (350)
+.+..||||||||++||++| |||+++||+ +.++|++|| ......||++++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~ 408 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVG 408 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEE
Confidence 44556999999999999998 999999874 569999999 556678999965
Q ss_pred Eec
Q 018829 295 RTY 297 (350)
Q Consensus 295 ~l~ 297 (350)
+.
T Consensus 409 -~~ 410 (430)
T 1w1w_A 409 -VY 410 (430)
T ss_dssp -EE
T ss_pred -EE
Confidence 53
No 102
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.35 E-value=3.5e-13 Score=131.63 Aligned_cols=122 Identities=11% Similarity=-0.019 Sum_probs=75.8
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEEC-CEeCCCCccccccccCCCccceeeccccc
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN-SSVGDGTYFLQEYTIPRGSNSFSLYDTRS 174 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~-G~~i~~~~~~~~~~~~~~~~~~~~~d~~~ 174 (350)
++++++. .+|++++|+||||||||||+|+|+|+... |..|+|.++ |.... ......+++++++...
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~----~~~G~I~~~~G~g~~--------tt~~~~i~~v~q~~~l 272 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE----ILTNDVSNVSGLGQH--------TTTAARLYHFPHGGDV 272 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC----CCCC---------------------CCCEEEECTTSCEE
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc----cccCCccccCCCCcc--------ceEEEEEEEECCCCEe
Confidence 4557764 48999999999999999999999998851 678999886 65432 0111123444443322
Q ss_pred cccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHH
Q 018829 175 LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 254 (350)
Q Consensus 175 ~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGq 254 (350)
+. . .++.++. + ...+..+..+.+.++++.+++.. +.+..+.+|| ||
T Consensus 273 ~d-----t-----pgv~e~~---l---~~l~~~e~~~~~~e~l~~~gl~~-----------------f~~~~~~~lS-G~ 318 (358)
T 2rcn_A 273 ID-----S-----PGVREFG---L---WHLEPEQITQGFVEFHDYLGHCK-----------------YRDCKHDADP-GC 318 (358)
T ss_dssp EE-----C-----HHHHTCC---C---CCCCHHHHHHTSGGGGGGTTCSS-----------------STTCCSSSCT-TC
T ss_pred cC-----c-----ccHHHhh---h---cCCCHHHHHHHHHHHHHHcCCch-----------------hcCCCcccCC-HH
Confidence 11 1 1222221 1 11233455667778888899987 4588999999 99
Q ss_pred HHHHHHHHHh
Q 018829 255 QYNQIVATTF 264 (350)
Q Consensus 255 rQRvaIArAL 264 (350)
+||++||+++
T Consensus 319 ~~r~ala~gl 328 (358)
T 2rcn_A 319 AIREAVENGA 328 (358)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHhcC
Confidence 9999999998
No 103
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.34 E-value=1.7e-14 Score=128.74 Aligned_cols=29 Identities=24% Similarity=0.470 Sum_probs=26.4
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++|++++|+||||||||||+++|+|++.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999999999999998
No 104
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.32 E-value=5.6e-13 Score=144.00 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=33.1
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++|+||++++|++++|+||||||||||+|+|+++..
T Consensus 663 ~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~ 698 (918)
T 3thx_B 663 PNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITI 698 (918)
T ss_dssp CEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH
T ss_pred cccccccCCCCeEEEEECCCCCchHHHHHHHHHHHH
Confidence 677999999999999999999999999999987643
No 105
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.32 E-value=8.2e-15 Score=152.37 Aligned_cols=195 Identities=17% Similarity=0.173 Sum_probs=86.5
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeE----------eEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCC-cccE
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLS----------DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQ 141 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~i----------s~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p-~~G~ 141 (350)
+.++++|+++.|+... .+. |+.+ +|+++. +||+||||||||||+++|+|++. | ++|.
T Consensus 9 ~~i~~~~l~~~~~~~~-r~l---l~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~-----P~~sG~ 76 (608)
T 3szr_A 9 GSVAENNLCSQYEEKV-RPC---IDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVAL-----PRGSGI 76 (608)
T ss_dssp -----------CHHHH-HHH---HHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC------------
T ss_pred chhhhhhhhHHHHHHH-HHH---HHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCC-----CCCCCe
Confidence 4688999999996321 111 2212 477764 99999999999999999999998 8 7999
Q ss_pred EEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcC
Q 018829 142 VTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG 221 (350)
Q Consensus 142 I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~g 221 (350)
|.++|.++...... .....+..+++++|+...+. ..++.+|+.++....... ..+
T Consensus 77 vt~~g~~i~~~~~~-~~~~~~~~i~~v~Q~~~l~~----------~~tv~e~i~~~~~~~~~~--------------~~~ 131 (608)
T 3szr_A 77 VTRCPLVLKLKKLV-NEDKWRGKVSYQDYEIEISD----------ASEVEKEINKAQNAIAGE--------------GMG 131 (608)
T ss_dssp CCCSCEEEEEEECS-SSSCCEEEESCC---CCCCC----------HHHHHTTHHHHHHHHHCS--------------SSC
T ss_pred EEEcCEEEEEecCC-ccccceeEEeeecccccCCC----------HHHHHHHHHHHHHHhcCC--------------ccc
Confidence 99999886310000 00111223445555433322 124555554322111100 011
Q ss_pred CCCccc-ccc----ceeeeecchhhhhccCCCCCCHH-HHHHHHHHHHh-chhhcCCCCCceEEEEec--h----HHHhc
Q 018829 222 CEPSVI-RKV----NFVIFVVDGLAVLKSMEGDSDVE-KQYNQIVATTF-NCPYLSFRDDKPVVVVTH--G----DLLSL 288 (350)
Q Consensus 222 l~~~~~-~~~----~~~~~vv~~~~~~~~~~~~LSGG-qrQRvaIArAL-DEPts~Ld~g~TVIiiTH--~----~~~~~ 288 (350)
+..... ... .--+.++|++++.......|+.+ ++|...+++.+ .+|. +.+++++|| + .+.++
T Consensus 132 ~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~-----~iil~vvt~~~d~a~~~~l~l 206 (608)
T 3szr_A 132 ISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQE-----TISLVVVPSNVDIATTEALSM 206 (608)
T ss_dssp CCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSS-----CCEEEEEESSSCTTTCHHHHH
T ss_pred cchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCC-----CCceEEEeccchhccHHHHHH
Confidence 111000 000 01257889997766656666654 55777777774 3332 346677777 2 11111
Q ss_pred c-------cEEEEEecCCeEeecCCccc
Q 018829 289 T-------DRARIRTYLGELLGIPPAKQ 309 (350)
Q Consensus 289 a-------Dri~v~l~~G~iv~~g~~~~ 309 (350)
+ .+.++++.++.++..|+.++
T Consensus 207 a~~v~~~g~rtI~VlTK~Dlv~~g~~~~ 234 (608)
T 3szr_A 207 AQEVDPEGDRTIGILTKPDLVDKGTEDK 234 (608)
T ss_dssp HHHHCSSCCSEEEEEECGGGSSSSSTTC
T ss_pred HHHHhhcCCceEEEecchhhcCcccHHH
Confidence 1 23334577777666666543
No 106
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.31 E-value=2.5e-12 Score=114.92 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=40.8
Q ss_pred CeeEeE-EEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCE
Q 018829 96 MTLSDY-DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 147 (350)
Q Consensus 96 L~~is~-~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~ 147 (350)
|+++.+ .+++|++++|+||||||||||++.|++... +..|.|.+.+.
T Consensus 12 Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~-----~~~~~v~~~~~ 59 (235)
T 2w0m_A 12 FDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL-----RDGDPCIYVTT 59 (235)
T ss_dssp HHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH-----HHTCCEEEEES
T ss_pred HHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH-----HCCCeEEEEEc
Confidence 455777 799999999999999999999999999988 77888877553
No 107
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.31 E-value=2.2e-14 Score=137.64 Aligned_cols=153 Identities=19% Similarity=0.187 Sum_probs=84.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhcc--------CCCCCCCcccEEEECCEeCCCCccccccccCCCccceeec-ccccccc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVF--------ENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLY-DTRSLSD 177 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~--------~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~-d~~~~~~ 177 (350)
++++|+|+||||||||+|+|.|+. . |+.|+|.++|.++.... .+...+...++..... +......
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~-----~d~G~i~idg~~l~~~~-~~~~el~~gCicc~~~~~~~~~l~ 78 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIE-----NEFGEVSVDDQLIGDRA-TQIKTLTNGCICCSRSNELEDALL 78 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEEC-----SSCCSCCEEEEEECTTS-CEEEEETTSCEEECTTSCHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEE-----ecCcccCccHHHHhCCC-CCEEEECCCceEEcccHHHHHHHH
Confidence 689999999999999999999997 5 89999999998875210 0000111101111100 1111111
Q ss_pred ch---hhhhHhh-HHHHHhhhhhhhhhhcCCCcHHHHHHH---HHHHHHcCCCCccccccceeeeecchhhhhccCCCCC
Q 018829 178 DA---SDNINMI-KLWIMEGVRHGELVIRRSDSSSLRNRM---RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS 250 (350)
Q Consensus 178 ~v---~q~~~l~-~~~v~~~v~~~~~~~~~~~~~~~~~~i---~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~L 250 (350)
.+ +|+..+. ..++.+++.++.. ....... ...-.. .+...++.+||...+.++.. +|
T Consensus 79 ~l~~~~q~~~~~~~~~v~E~~~l~~p-------~~~~~~~~~~~~~~~~--------~~l~~~l~~vd~~~~~~~~~-~l 142 (318)
T 1nij_A 79 DLLDNLDKGNIQFDRLVIECTGMADP-------GPIIQTFFSHEVLCQR--------YLLDGVIALVDAVHADEQMN-QF 142 (318)
T ss_dssp HHHHHHHHTSCCCSEEEEEEETTCCH-------HHHHHHHHHSHHHHHH--------EEEEEEEEEEETTTHHHHHH-HC
T ss_pred HHHhHHhcCCCCCCEEEEeCCCCCCH-------HHHHHHHhcCccccCe--------EEECCEEEEEEHHHHHHHHh-hc
Confidence 11 1211110 0012222221110 1100000 000111 13455778889887765555 89
Q ss_pred CHHHHHHHHHHHHh-------chhhcC-------CCCCceEEEEec
Q 018829 251 DVEKQYNQIVATTF-------NCPYLS-------FRDDKPVVVVTH 282 (350)
Q Consensus 251 SGGqrQRvaIArAL-------DEPts~-------Ld~g~TVIiiTH 282 (350)
|+||+||+..++++ ||| .. +.++.||+++||
T Consensus 143 s~g~~Q~~~ad~ill~k~dl~de~-~~l~~~l~~l~~~~~ii~~sh 187 (318)
T 1nij_A 143 TIAQSQVGYADRILLTKTDVAGEA-EKLHERLARINARAPVYTVTH 187 (318)
T ss_dssp HHHHHHHHTCSEEEEECTTTCSCT-HHHHHHHHHHCSSSCEEECCS
T ss_pred hHHHHHHHhCCEEEEECcccCCHH-HHHHHHHHHhCCCCeEEEecc
Confidence 99999999988887 676 22 346899999999
No 108
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.30 E-value=5.3e-13 Score=135.06 Aligned_cols=49 Identities=16% Similarity=0.310 Sum_probs=45.4
Q ss_pred eeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 97 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 97 ~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
+++||++++|++++|+|+||||||||+++|+|+++ ++.|+|.++|.+..
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~-----~~~G~V~l~g~D~~ 332 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE-----QQGKSVMLAAGDTF 332 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEECCCTT
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh-----hcCCeEEEecCccc
Confidence 45999999999999999999999999999999999 99999999877754
No 109
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.30 E-value=2.2e-14 Score=128.05 Aligned_cols=54 Identities=22% Similarity=0.396 Sum_probs=41.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCCCCccccccccCCCccceeeccc
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDT 172 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~~~~~~~~~d~ 172 (350)
|++++|+||||||||||+++|+|+++ ++| |.++|.+.. .....++.+++.+|+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~------~~G-i~~~g~~~~------~~~~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK------SSG-VPVDGFYTE------EVRQGGRRIGFDVVTL 54 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH------HTT-CCCEEEECC------EEETTSSEEEEEEEET
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc------cCC-EEEcCEecc------hhHhhhceEEEEEEec
Confidence 78999999999999999999999986 468 888887763 1122244567777764
No 110
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.30 E-value=2.2e-12 Score=139.51 Aligned_cols=89 Identities=17% Similarity=0.227 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCCHHHHHHHHHHHHh-----------chhhcCCCC----
Q 018829 209 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD---- 273 (350)
Q Consensus 209 ~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-----------DEPts~Ld~---- 273 (350)
+.+++ ++|..+||... .+++.+.+|||||+||++||++| ||||++|++
T Consensus 498 i~~Rl-~~L~~vGL~~l----------------~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~ 560 (993)
T 2ygr_A 498 IRSRL-GFLLDVGLEYL----------------SLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNR 560 (993)
T ss_dssp HHHHH-HHHHHHTGGGS----------------CTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHH
T ss_pred HHHHH-HHHhhCCCCcc----------------ccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHH
Confidence 44444 45788898741 14889999999999999999998 999999974
Q ss_pred ------------CceEEEEec-hHHHhcccEEEEEe------cCCeEeecCCccccccCCC
Q 018829 274 ------------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPE 315 (350)
Q Consensus 274 ------------g~TVIiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~ 315 (350)
|.|||+|+| ......||+|+ +| ++|++++.|++++++..+.
T Consensus 561 ~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi-~Lgp~aG~~gG~iv~~G~~~e~~~~~~ 620 (993)
T 2ygr_A 561 RLIETLTRLRDLGNTLIVVEHDEDTIEHADWIV-DIGPGAGEHGGRIVHSGPYDELLRNKD 620 (993)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEE-EECSSSGGGCCSCCEEECHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEE-EecCccccCCCEEEEeeCHHHhhhhhH
Confidence 899999999 33456799996 58 7999999999999887643
No 111
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.29 E-value=1.9e-14 Score=126.62 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=31.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccCCCCCCCc---ccEEEECCEeCC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNSSVGD 150 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~---~G~I~i~G~~i~ 150 (350)
++++|+|+||||||||+++|+|+++ |+ .|.|.++|.++.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~-----~~g~~~G~I~~dg~~i~ 44 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR-----ERGLRVAVVKRHAHGDF 44 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH-----HTTCCEEEEEC------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh-----hcCCceEEEEEcCcccc
Confidence 5899999999999999999999999 87 899999998753
No 112
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.29 E-value=1e-13 Score=132.09 Aligned_cols=131 Identities=14% Similarity=0.022 Sum_probs=78.6
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEE---CCEeCCCCccccccccCCCccceeecccccc--
Q 018829 101 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY---NSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL-- 175 (350)
Q Consensus 101 ~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i---~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~-- 175 (350)
+++.+|++++|+||||||||||+|+|. +.. |++|+|.+ +|++++... +.... ...++++|.+...
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~-----~~~G~i~~~~~~G~~~t~~~--~~~~~--~~~g~v~d~pg~~~~ 229 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEE-----LRTQEVSEKTERGRHTTTGV--RLIPF--GKGSFVGDTPGFSKV 229 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCC-----CCCSCC---------CCCCE--EEEEE--TTTEEEESSCCCSSC
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-Hhh-----CcccccccccCCCCCceeeE--EEEEc--CCCcEEEECcCcCcC
Confidence 345679999999999999999999999 998 99999999 888765211 11111 1457777765322
Q ss_pred ---ccc-hhhhhH-hhHHHHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCC
Q 018829 176 ---SDD-ASDNIN-MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS 250 (350)
Q Consensus 176 ---~~~-v~q~~~-l~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~L 250 (350)
..+ + +++. .++.. ... ...........+...++.++++.++|.+. .+++++..|
T Consensus 230 ~l~~~lt~-e~l~~~f~~~--~~~--~c~~~~~~~~~e~~~~v~~~l~~~~L~~~----------------~~~~~~~~l 288 (302)
T 2yv5_A 230 EATMFVKP-REVRNYFREF--LRY--QCKYPDCTHTNEPGCAVKEAVKNGEISCE----------------RYKSYLKII 288 (302)
T ss_dssp CGGGTSCG-GGGGGGCGGG--HHH--HHHSTTCCSSSCTTCHHHHHHHTTSSCHH----------------HHHHHHHHT
T ss_pred cccccCCH-HHHHHHHHHH--HHc--cCCCCCCCCCCCCCCHHHHHHHcCCCCHH----------------HHHHHHHHH
Confidence 122 2 3331 11100 000 00001101122334568889999999852 358899999
Q ss_pred CHHHHHHHHHHH
Q 018829 251 DVEKQYNQIVAT 262 (350)
Q Consensus 251 SGGqrQRvaIAr 262 (350)
||.+++++.|||
T Consensus 289 s~~~~R~~~~~~ 300 (302)
T 2yv5_A 289 KVYLEEIKELCR 300 (302)
T ss_dssp TCCCTTHHHHSS
T ss_pred HHHHHHHHHHhc
Confidence 998899999987
No 113
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.25 E-value=1.9e-13 Score=132.03 Aligned_cols=43 Identities=19% Similarity=0.318 Sum_probs=40.6
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
.++|++++|+||||||||||+++|+|+++ |+.|+|.+.|.++.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~-----~~~g~V~l~g~D~~ 168 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLK-----NHGFSVVIAASDTF 168 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEECCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH-----hcCCEEEEEeeccc
Confidence 47899999999999999999999999999 99999999999875
No 114
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.25 E-value=1.6e-13 Score=130.62 Aligned_cols=122 Identities=12% Similarity=-0.045 Sum_probs=76.2
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEE---CCEeCCCCccccccccCCCccceeeccccc-cc
Q 018829 101 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY---NSSVGDGTYFLQEYTIPRGSNSFSLYDTRS-LS 176 (350)
Q Consensus 101 ~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i---~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~-~~ 176 (350)
|++.+|++++|+||||||||||+|+|+|+.. |++|+|.+ +|++++... +... .+.+++++|.+.. ..
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~-----~~~G~i~~~~~~g~~~t~~~--~~~~--~~~~g~v~q~p~~~~~ 234 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK-----LRVSEVSEKLQRGRHTTTTA--QLLK--FDFGGYVVDTPGFANL 234 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC-----CC-------------CCCSC--CEEE--CTTSCEEESSCSSTTC
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccc-----ccccceecccCCCCCceeee--EEEE--cCCCCEEEECcCCCcc
Confidence 5567899999999999999999999999999 99999999 888875311 1111 1246788887643 22
Q ss_pred cchhhh----hHhhHH-HHHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCCccccccceeeeecchhhhhccCCCCCC
Q 018829 177 DDASDN----INMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSD 251 (350)
Q Consensus 177 ~~v~q~----~~l~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LS 251 (350)
++++++ ..+++. ++ +|+.++...+ ..+...++.++|+.++|... .++++|.+||
T Consensus 235 ~~~~~~~~~~~~l~~~~~~-~n~~~~~~~~----~~e~~~~v~~~l~~~~L~~~----------------~~~~~~~~ls 293 (301)
T 1u0l_A 235 EINDIEPEELKHYFKEFGD-KQCFFSDCNH----VDEPECGVKEAVENGEIAES----------------RYENYVKMFY 293 (301)
T ss_dssp CCCSSCHHHHGGGSTTSSS-CCCSSTTCCS----SSCSSCHHHHHHHHTSSCHH----------------HHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHhccc-ccCcCCCCcC----CCCCCcHHHHHHHcCCCCHH----------------HHHHHHHHHH
Confidence 334433 344554 56 8888764222 12334568889999999632 4688888888
Q ss_pred H
Q 018829 252 V 252 (350)
Q Consensus 252 G 252 (350)
+
T Consensus 294 e 294 (301)
T 1u0l_A 294 E 294 (301)
T ss_dssp H
T ss_pred H
Confidence 5
No 115
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.20 E-value=1.1e-12 Score=113.89 Aligned_cols=61 Identities=16% Similarity=0.165 Sum_probs=50.2
Q ss_pred EEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 78 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 78 ~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
+++++.|+. ..+ ++++||+|++|++++|+||||||||||+|+|+|++ |++|+|.++|.++.
T Consensus 11 ~~~~~~~g~---~~~---l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l------~~~G~V~~~g~~i~ 71 (158)
T 1htw_A 11 EFSMLRFGK---KFA---EILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI------GHQGNVKSPTYTLV 71 (158)
T ss_dssp HHHHHHHHH---HHH---HHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT------TCCSCCCCCTTTCE
T ss_pred HHHHHHHHH---HHH---HhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC------CCCCeEEECCEeee
Confidence 455666643 234 56699999999999999999999999999999998 36799999987663
No 116
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.19 E-value=2.3e-13 Score=119.21 Aligned_cols=41 Identities=29% Similarity=0.352 Sum_probs=35.5
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC
Q 018829 102 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 102 ~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 149 (350)
.+++|++++|+||||||||||+++|++.+ ..|.|.++|.++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~-------~~g~i~i~~d~~ 45 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLP-------GVPKVHFHSDDL 45 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCS-------SSCEEEECTTHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhcc-------CCCeEEEcccch
Confidence 47899999999999999999999999963 468999998654
No 117
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.19 E-value=3.7e-13 Score=134.06 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=36.4
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++|+++||+++|+.. .+ ++++||+| +|+||||||||||+|+|+|+..
T Consensus 10 ~~l~~~~l~~~y~~~---~v---l~~vsf~I------~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 10 GYVGFANLPNQVYRK---SV---KRGFEFTL------MVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp -----CCCCCCTTTT---TC---C-CCCEEE------EEECCTTSSHHHHHHHHTTCCC
T ss_pred CcEEEEecceeECCE---EE---ecCCCEEE------EEECCCCCcHHHHHHHHhCCCC
Confidence 579999999999753 34 66699998 9999999999999999999987
No 118
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.18 E-value=7.4e-12 Score=133.14 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=30.7
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++|+||+ |++++|+||||||||||+|+|+|+..
T Consensus 569 l~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~ 601 (765)
T 1ewq_A 569 PNDLEMA---HELVLITGPNMAGKSTFLRQTALIAL 601 (765)
T ss_dssp CEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred eeeccCC---CcEEEEECCCCCChHHHHHHHHhhhh
Confidence 6779999 99999999999999999999999873
No 119
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.13 E-value=1.6e-11 Score=124.11 Aligned_cols=49 Identities=14% Similarity=0.274 Sum_probs=46.8
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
|+++||+|++ ++++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 20 l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 20 FFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI-----PDLTLLNFRNTTEA 68 (483)
T ss_dssp EEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC-----CCTTTCCCCCTTSC
T ss_pred ccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC-----CCCCEEEECCEEcc
Confidence 7779999999 9999999999999999999999999 99999999998774
No 120
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.13 E-value=1.1e-11 Score=132.49 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=32.8
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++|++|+ ++|++++|+||||||||||+|+|+|+..
T Consensus 598 lndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~ 632 (800)
T 1wb9_A 598 ANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIAL 632 (800)
T ss_dssp CEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 7779999 9999999999999999999999999864
No 121
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.13 E-value=2.6e-11 Score=117.80 Aligned_cols=178 Identities=12% Similarity=0.087 Sum_probs=87.9
Q ss_pred CeeE-eEEEeCCcEEEEEcCCCChHHHHHHHHHhcc--CCCCCCCcc----cE-EEECCEeCCCCccccccccCCCccce
Q 018829 96 MTLS-DYDVPKTTSLLLIGPKGSGKSSLVNRISKVF--ENDKFASER----AQ-VTYNSSVGDGTYFLQEYTIPRGSNSF 167 (350)
Q Consensus 96 L~~i-s~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~--~~~~~~p~~----G~-I~i~G~~i~~~~~~~~~~~~~~~~~~ 167 (350)
|+.+ ++.|++|++++|+||||||||||++.|++.. + |++ |. |++++.+.. .+.++++
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~-----~~~Gg~~G~vi~i~~e~~~----------~~~~i~~ 184 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLP-----PEEGGLNGSVIWIDTENTF----------RPERIRE 184 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSC-----GGGTSCSCEEEEEESSSCC----------CHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccc-----hhcCCCCCeEEEEeCCCCC----------CHHHHHH
Confidence 3334 6899999999999999999999999999998 5 676 67 788775421 0011122
Q ss_pred eeccccccccchhhhhHhhHHHHHhhhhhhhhhhcCCCcHHH---HHHHHHHHHHcCCCCccccccceeeeecchhhhhc
Q 018829 168 SLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSL---RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLK 244 (350)
Q Consensus 168 ~~~d~~~~~~~v~q~~~l~~~~v~~~v~~~~~~~~~~~~~~~---~~~i~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~ 244 (350)
+.|+..+...++.+|+.+.... ..... -+.+..++..+--. +.+.-++|+|+++-.-
T Consensus 185 -----------i~q~~~~~~~~v~~ni~~~~~~----~~~~~~~~l~~~~~~~~~lS~G-----~~~~~llIlDs~ta~l 244 (349)
T 1pzn_A 185 -----------IAQNRGLDPDEVLKHIYVARAF----NSNHQMLLVQQAEDKIKELLNT-----DRPVKLLIVDSLTSHF 244 (349)
T ss_dssp -----------HHHTTTCCHHHHGGGEEEEECC----SHHHHHHHHHHHHHHHHHSSSS-----SSCEEEEEEETSSTTH
T ss_pred -----------HHHHcCCCHHHHhhCEEEEecC----ChHHHHHHHHHHHHHHHHhccc-----cCCCCEEEEeCchHhh
Confidence 3333333334566666553211 11111 12223333332000 0123457888886432
Q ss_pred cCC--CCCCHHHHH--HHHHHHHhchhhcCCCCCceEEEEec--hHHHhcccEEEEEecCCeEeecCCccccc
Q 018829 245 SME--GDSDVEKQY--NQIVATTFNCPYLSFRDDKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIF 311 (350)
Q Consensus 245 ~~~--~~LSGGqrQ--RvaIArALDEPts~Ld~g~TVIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~ 311 (350)
... ..=+-+++| ...+.+.|-.=. -..++|||+++| .......+... +...|++++.+.+..++
T Consensus 245 d~~~~~~~~~~~r~~~~~~~l~~L~~la--~~~~~tvii~~h~~~~~~~~~~~~~-~~~~G~~l~~~~~~rL~ 314 (349)
T 1pzn_A 245 RSEYIGRGALAERQQKLAKHLADLHRLA--NLYDIAVFVTNQVQARPDAFFGDPT-RPIGGHILAHSATLRVY 314 (349)
T ss_dssp HHHCCSTTTHHHHHHHHHHHHHHHHHHH--HHTTCEEEEEEECC----------------CCCCCTTCSEEEE
T ss_pred hhhhcccccHHHHHHHHHHHHHHHHHHH--HHcCcEEEEEcccccccccccCCcc-ccCCcceEeecCcEEEE
Confidence 111 111223432 223333331000 013789999999 32222223332 37778888887766554
No 122
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.12 E-value=8.9e-11 Score=109.68 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=27.6
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 102 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 102 ~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+++|++++|+||||||||||++.|++...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 378999999999999999999999999665
No 123
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.11 E-value=9.1e-13 Score=131.23 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=39.1
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
.+|++++|+||||||||||+++|+|++. |++|.|.+.+.++.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~-----~~~g~I~~~ed~ie 206 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN-----SSERNILTVEDPIE 206 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC-----CTTSCEEEEESSCC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC-----CCCCEEEEecccch
Confidence 6899999999999999999999999999 89999999887764
No 124
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.11 E-value=4.7e-11 Score=102.56 Aligned_cols=54 Identities=15% Similarity=0.062 Sum_probs=45.7
Q ss_pred hccCCCCCCHHHHHHHHHH------HHh---------chhhcCCCC----------------CceEEEEec-hHHHhccc
Q 018829 243 LKSMEGDSDVEKQYNQIVA------TTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTD 290 (350)
Q Consensus 243 ~~~~~~~LSGGqrQRvaIA------rAL---------DEPts~Ld~----------------g~TVIiiTH-~~~~~~aD 290 (350)
.++++.+||||||||++|| ||| ||||++||. +.|||++|| ..+..+||
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d 130 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAAD 130 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCS
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCC
Confidence 3678899999999999886 777 999999874 789999999 45668999
Q ss_pred EEEEEec
Q 018829 291 RARIRTY 297 (350)
Q Consensus 291 ri~v~l~ 297 (350)
+++ +|+
T Consensus 131 ~ii-~l~ 136 (148)
T 1f2t_B 131 HVI-RIS 136 (148)
T ss_dssp EEE-EEE
T ss_pred EEE-EEE
Confidence 996 473
No 125
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.09 E-value=1.4e-11 Score=120.20 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=44.9
Q ss_pred EEEEEEECCCceEEecCCCeeEeE-------EEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCc-ccEEEECC
Q 018829 78 KNKILSYTPGAWIENVGGMTLSDY-------DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNS 146 (350)
Q Consensus 78 ~~l~~~y~~~~~~~~l~~L~~is~-------~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~-~G~I~i~G 146 (350)
..++++|-+.. ... |+++.+ .+.+|++++|+||||||||||+++|+|+++ |+ .|.|...+
T Consensus 92 ~~~~iR~~~~~-~~~---l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~-----~~~~~~i~t~e 159 (356)
T 3jvv_A 92 AGAVFRTIPSK-VLT---MEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLN-----NTKYHHILTIE 159 (356)
T ss_dssp EEEEEEEECCS-CCC---TTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHH-----HHCCCEEEEEE
T ss_pred cEEEEEECCCC-CCC---HHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhccc-----CCCCcEEEEcc
Confidence 46677774332 234 344665 678899999999999999999999999998 87 56665443
No 126
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.08 E-value=2.5e-12 Score=128.21 Aligned_cols=49 Identities=18% Similarity=0.308 Sum_probs=38.9
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcE--EEEEcCCCChHHHHHHHHHhcc
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTS--LLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~--iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.+++++ ++.|++ .+ |+++||+|++|++ ++|+||||||||||+|+|+|+.
T Consensus 16 ~l~~~~-~~~y~~---~~----L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP----DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp -CCCCC-CC-CC-----C----HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred eEEEee-EEEECC---ee----cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 467777 888864 22 4559999999999 9999999999999999999985
No 127
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.04 E-value=8.1e-11 Score=117.08 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=32.7
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
-++++|+++.|+.++|+|+||||||||+++|++..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 45699999999999999999999999999999984
No 128
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.03 E-value=7.4e-12 Score=122.16 Aligned_cols=46 Identities=17% Similarity=0.320 Sum_probs=44.0
Q ss_pred eeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCE
Q 018829 97 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 147 (350)
Q Consensus 97 ~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~ 147 (350)
+++||+|++|++++|+||||||||||+++|+|+++ |++|.|.++|.
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~-----~~~g~I~ie~~ 211 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP-----FDQRLITIEDV 211 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC-----TTSCEEEEESS
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC-----CCceEEEECCc
Confidence 66999999999999999999999999999999999 99999999874
No 129
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.03 E-value=5.2e-10 Score=100.90 Aligned_cols=42 Identities=10% Similarity=0.174 Sum_probs=35.6
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHHh--ccCCCCCCC-----cccEEEECCEe
Q 018829 102 DVPKTTSLLLIGPKGSGKSSLVNRISK--VFENDKFAS-----ERAQVTYNSSV 148 (350)
Q Consensus 102 ~I~~Ge~iaIvGpnGsGKSTLl~~I~g--l~~~~~~~p-----~~G~I~i~G~~ 148 (350)
-|++|++++|+||||||||||++.|++ +.+ | ..|.+++++.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~-----~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLP-----IDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSC-----GGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCc-----hhcCCCCCeEEEEECCC
Confidence 489999999999999999999999999 454 4 56788887754
No 130
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.03 E-value=1.9e-12 Score=125.23 Aligned_cols=66 Identities=11% Similarity=0.133 Sum_probs=58.1
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
++++++++++|+. . .+ |+++||++++|++++|+||||||||||+++|+|++. |++|+|.+.|.++.
T Consensus 29 ~ie~~~~~~~~~~-~--~~---l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~-----~~~g~v~i~~~d~~ 94 (337)
T 2qm8_A 29 LAESRRADHRAAV-R--DL---IDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT-----AAGHKVAVLAVDPS 94 (337)
T ss_dssp HHTCSSHHHHHHH-H--HH---HHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEEEECGG
T ss_pred HHeeCCcccccCh-H--HH---HHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh-----hCCCEEEEEEEcCc
Confidence 5778888888853 1 33 667999999999999999999999999999999999 99999999998864
No 131
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.02 E-value=4.6e-10 Score=99.76 Aligned_cols=41 Identities=17% Similarity=0.107 Sum_probs=33.1
Q ss_pred EeE-EEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECC
Q 018829 99 SDY-DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 146 (350)
Q Consensus 99 is~-~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G 146 (350)
+.. .+++|++++|+||||||||||++.|++ . +..+.++++.
T Consensus 12 ~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-----~~~~v~~i~~ 53 (220)
T 2cvh_A 12 LLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-----SGKKVAYVDT 53 (220)
T ss_dssp HTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-----HCSEEEEEES
T ss_pred hhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-----cCCcEEEEEC
Confidence 443 589999999999999999999999999 4 4445555544
No 132
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.01 E-value=2.9e-10 Score=100.06 Aligned_cols=63 Identities=10% Similarity=-0.039 Sum_probs=51.4
Q ss_pred eeeeecchhhhhccCCCCCCHHHHHHHHHHHHh-------------chhhcCCCC---------------CceEEEEec-
Q 018829 232 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH- 282 (350)
Q Consensus 232 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-------------DEPts~Ld~---------------g~TVIiiTH- 282 (350)
++.+.+.++....+.+..||||||||++||++| |||+++||+ +.++|+|||
T Consensus 47 gl~i~~~~~~~~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~ 126 (173)
T 3kta_B 47 GLEIEAKPAGKDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLR 126 (173)
T ss_dssp CEEEEEETTSSSCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSC
T ss_pred CceEEecCCCccccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEec
Confidence 444455555556677889999999999999998 999999874 678999999
Q ss_pred hHHHhcccEEEE
Q 018829 283 GDLLSLTDRARI 294 (350)
Q Consensus 283 ~~~~~~aDri~v 294 (350)
..+...||+++.
T Consensus 127 ~~~~~~ad~i~~ 138 (173)
T 3kta_B 127 DVMMANADKIIG 138 (173)
T ss_dssp HHHHTTCSEEEE
T ss_pred HHHHHhCCEEEE
Confidence 666789999964
No 133
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.01 E-value=4.9e-11 Score=116.86 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=38.2
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCc-ccEEEECCEeC
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNSSVG 149 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~-~G~I~i~G~~i 149 (350)
+++|++++|+||||||||||+++|+|+++ |+ +|+|.+.+.++
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~-----~~~~g~I~~~e~~~ 175 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYIN-----QTKSYHIITIEDPI 175 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHH-----HHSCCEEEEEESSC
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcC-----cCCCcEEEEecccH
Confidence 78999999999999999999999999999 88 89998766554
No 134
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.97 E-value=1.9e-10 Score=100.74 Aligned_cols=36 Identities=19% Similarity=0.359 Sum_probs=31.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 149 (350)
|++++|+||||||||||+++|++ +.+|.+.++|.++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~--------~~~g~~~i~~d~~ 37 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA--------QLDNSAYIEGDII 37 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH--------HSSSEEEEEHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc--------ccCCeEEEcccch
Confidence 67999999999999999999986 3458899988654
No 135
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.96 E-value=2.3e-11 Score=116.51 Aligned_cols=109 Identities=12% Similarity=0.063 Sum_probs=52.9
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEE---CCEeCCCCccccccccCCCccceeeccccccc-
Q 018829 101 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY---NSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLS- 176 (350)
Q Consensus 101 ~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i---~G~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~- 176 (350)
+++.+|++++|+||||||||||+|+|.|+.. |..|+|.+ +|+.++.. .+.... ..+++++.+....
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~-----~~~G~I~~~~~~G~~tt~~--~~~~~~---~~g~v~dtpg~~~~ 237 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG-----LRTNEISEHLGRGKHTTRH--VELIHT---SGGLVADTPGFSSL 237 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC------------------------CCC--CCEEEE---TTEEEESSCSCSSC
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc-----ccccceeeecCCCcccccH--HHHhhc---CCEEEecCCCcccc
Confidence 5677999999999999999999999999999 99999998 78766421 111111 1467777654322
Q ss_pred ---cc-hhhhhH-hhHHH--HHhhhhhhhhhhcCCCcHHHHHHHHHHHHHcCCCC
Q 018829 177 ---DD-ASDNIN-MIKLW--IMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 224 (350)
Q Consensus 177 ---~~-v~q~~~-l~~~~--v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~ 224 (350)
.+ + +++. .++.. ..+...|.. .....+....+.++++.+++.+
T Consensus 238 ~l~~lt~-e~l~~~f~~~~~~~~~C~f~~----c~h~~e~~~~v~~aLe~~~L~~ 287 (307)
T 1t9h_A 238 EFTDIEE-EELGYTFPDIREKSSSCKFRG----CLHLKEPKCAVKQAVEDGELKQ 287 (307)
T ss_dssp CCTTCCH-HHHGGGSHHHHHHGGGCSSTT----CCSSSCSSCHHHHHHHHTSSCH
T ss_pred ccccCCH-HHHHHHHHHHHHHhhhccccC----CCCccCHHHHHHHHHHhCCChH
Confidence 22 3 4442 22211 111111110 0111223356788899999986
No 136
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.93 E-value=8.9e-13 Score=123.87 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=40.8
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
+++++|.+++| ++|+||||||||||+++|+|.+. + +.|.++|.++.
T Consensus 36 l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~-----~--~~i~i~g~~l~ 81 (274)
T 2x8a_A 36 FKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG-----L--NFISVKGPELL 81 (274)
T ss_dssp HHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT-----C--EEEEEETTTTC
T ss_pred HHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC-----C--CEEEEEcHHHH
Confidence 56699999999 99999999999999999999987 5 78999887654
No 137
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.90 E-value=1.2e-09 Score=96.25 Aligned_cols=42 Identities=24% Similarity=0.434 Sum_probs=32.3
Q ss_pred eEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 100 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 100 s~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
|+++++|++++|+||||||||||+++|+|++ | .+.+.+..+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~------~---~~~~~~~~~~ 42 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL------A---EIKISISHTT 42 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS------S---SEEECCCEEC
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC------C---CeEEeceecc
Confidence 5778899999999999999999999999996 3 3666665543
No 138
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.89 E-value=4.6e-09 Score=103.93 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=33.9
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHH--HHhccCCCCCCCccc-----EEEECCEe
Q 018829 102 DVPKTTSLLLIGPKGSGKSSLVNR--ISKVFENDKFASERA-----QVTYNSSV 148 (350)
Q Consensus 102 ~I~~Ge~iaIvGpnGsGKSTLl~~--I~gl~~~~~~~p~~G-----~I~i~G~~ 148 (350)
-|++|++++|+||||||||||++. +.++.+ ++.| .+++++.+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p-----~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIP-----LDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSC-----GGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccC-----cccCCCCCcEEEEeCCC
Confidence 489999999999999999999994 456666 5444 77887754
No 139
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.89 E-value=4.7e-13 Score=128.80 Aligned_cols=68 Identities=16% Similarity=0.180 Sum_probs=49.3
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCC-------cEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECC
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKT-------TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 146 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~G-------e~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G 146 (350)
+++.++++..|+.. .+ ++++++.|.+| +.++|+||||+|||||+++|++.+... +.+.+|.+..++
T Consensus 18 ~lr~~~l~~~~g~~---~~---~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~-~~~~sg~~~~~~ 90 (334)
T 1in4_A 18 FLRPKSLDEFIGQE---NV---KKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVKQ 90 (334)
T ss_dssp TTSCSSGGGCCSCH---HH---HHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC-EEEEETTTCCSH
T ss_pred HcCCccHHHccCcH---HH---HHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-EEEEechHhcCH
Confidence 35666777777642 23 66699999876 899999999999999999999998210 006677666555
Q ss_pred Ee
Q 018829 147 SV 148 (350)
Q Consensus 147 ~~ 148 (350)
.+
T Consensus 91 ~~ 92 (334)
T 1in4_A 91 GD 92 (334)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 140
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.86 E-value=6.9e-10 Score=101.01 Aligned_cols=47 Identities=21% Similarity=0.302 Sum_probs=35.0
Q ss_pred eeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCC--cccEEEECCEe
Q 018829 97 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS--ERAQVTYNSSV 148 (350)
Q Consensus 97 ~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p--~~G~I~i~G~~ 148 (350)
++-.-..++|++++|+||||||||||+++|+|+++ | ..|.|.+.+.+
T Consensus 7 ~~~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~-----p~~~~g~v~~ttr~ 55 (219)
T 1s96_A 7 HHHHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQP-----LYDTQVSVSHTTRQ 55 (219)
T ss_dssp --------CCCEEEEECCTTSCHHHHHHHHHHHSC-----TTTEEECCCEECSC
T ss_pred ccccccCCCCcEEEEECCCCCCHHHHHHHHhccCC-----CCceEEEEEecCCC
Confidence 33455789999999999999999999999999998 6 67888777644
No 141
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.86 E-value=5.3e-10 Score=101.33 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=22.9
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHH-hccC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS-KVFE 131 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~-gl~~ 131 (350)
.+++||++++|++++|+||||||||||+++|+ |+++
T Consensus 17 ~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 17 QGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -----CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 55699999999999999999999999999999 9985
No 142
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.84 E-value=3.5e-11 Score=114.69 Aligned_cols=66 Identities=14% Similarity=0.193 Sum_probs=55.3
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEE-------------------eCCcEEEEEcCCCChHHHHHHHHHhccCCC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDV-------------------PKTTSLLLIGPKGSGKSSLVNRISKVFEND 133 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I-------------------~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~ 133 (350)
.+|++++|++.|.+ . +++++|.+ .+|+++||+||||||||||+++|+|++..
T Consensus 36 ~~i~~~~v~~~y~~---~-----~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~- 106 (308)
T 1sq5_A 36 EDLSLEEVAEIYLP---L-----SRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSR- 106 (308)
T ss_dssp TTCCHHHHHHTHHH---H-----HHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTT-
T ss_pred cccchHhHHHHHHH---H-----HHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhh-
Confidence 46899999999942 3 66799988 89999999999999999999999998751
Q ss_pred CCCCcccEEEE---CCEeC
Q 018829 134 KFASERAQVTY---NSSVG 149 (350)
Q Consensus 134 ~~~p~~G~I~i---~G~~i 149 (350)
.|++|+|.+ +|...
T Consensus 107 --~~~~G~i~vi~~d~~~~ 123 (308)
T 1sq5_A 107 --WPEHRRVELITTDGFLH 123 (308)
T ss_dssp --STTCCCEEEEEGGGGBC
T ss_pred --CCCCCeEEEEecCCccC
Confidence 167899999 77553
No 143
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.81 E-value=1.1e-10 Score=110.61 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=26.0
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++.+++|+||+|||||||+++|.+++.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3578999999999999999999999998
No 144
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.80 E-value=4.8e-11 Score=109.38 Aligned_cols=39 Identities=23% Similarity=0.398 Sum_probs=35.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHH---hccCCCCCCCcccEEEECCEe
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRIS---KVFENDKFASERAQVTYNSSV 148 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~---gl~~~~~~~p~~G~I~i~G~~ 148 (350)
++++++|+||||||||||+++|+ |+.. |+.|+|.++|.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~-----~~~G~i~~~~~~ 67 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH-----LSSGHFLRENIK 67 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC-----EEHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE-----ecHHHHHHHHHh
Confidence 47899999999999999999999 9998 999998877643
No 145
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.77 E-value=1.9e-10 Score=105.58 Aligned_cols=58 Identities=14% Similarity=0.189 Sum_probs=41.2
Q ss_pred cEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 74 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 74 ~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
.|+++|+...|+ -+|++.+ ++++|+||||||||||+++|+|++. |++|.|.++|.++.
T Consensus 9 ~l~l~~~~~~~~-------------~~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~-----~~~G~i~~~g~~~~ 66 (227)
T 1qhl_A 9 SLTLINWNGFFA-------------RTFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI-----PDLTLLHFRNTTEA 66 (227)
T ss_dssp EEEEEEETTEEE-------------EEECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS-----CCTTTC--------
T ss_pred EEEEEeeecccC-------------CEEEEcC-cEEEEECCCCCCHHHHHHHHhcccc-----cCCCeEEECCEEcc
Confidence 477777765442 1445556 8999999999999999999999999 99999999998873
No 146
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.73 E-value=4.6e-10 Score=104.35 Aligned_cols=54 Identities=17% Similarity=0.278 Sum_probs=34.9
Q ss_pred CcEEEEEE-EEEECCCceEEecCCCeeEeEEEeC---CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 73 SLTDAKNK-ILSYTPGAWIENVGGMTLSDYDVPK---TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 73 ~~l~i~~l-~~~y~~~~~~~~l~~L~~is~~I~~---Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++++++|+ +++|+.+. ++ |+++||+|++ |++++|+|++||||||+.++|++.+.
T Consensus 16 ~~l~~~~~~~~~~~~~~--~~---l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQ--QI---LKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp ----------------C--HH---HHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CceEEcceeeEEecCcc--hh---hhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57999999 99993232 34 6779999999 99999999999999999999999765
No 147
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.68 E-value=3.9e-09 Score=94.24 Aligned_cols=42 Identities=26% Similarity=0.327 Sum_probs=36.1
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCC---cccEEEECCEeC
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS---ERAQVTYNSSVG 149 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p---~~G~I~i~G~~i 149 (350)
.++|++++|+||||||||||+++|+|+++ | ..|.|.++|..+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~-----~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS-----AQGLPAEVVPMDGFHL 63 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH-----HTTCCEEEEESGGGBC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh-----hcCCceEEEecCCCcC
Confidence 46899999999999999999999999998 6 367787777544
No 148
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.68 E-value=7.1e-09 Score=99.02 Aligned_cols=47 Identities=17% Similarity=0.312 Sum_probs=41.3
Q ss_pred EeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 99 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 99 is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
++|+.++|++++|+|||||||||+++.|++.+. +..|+|.+.+.|..
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~-----~~g~kV~lv~~D~~ 143 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-----DEGKSVVLAAADTF 143 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEECTT
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH-----hcCCEEEEEccccc
Confidence 556678899999999999999999999999999 88889998776653
No 149
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.63 E-value=2.8e-08 Score=86.16 Aligned_cols=34 Identities=26% Similarity=0.292 Sum_probs=32.1
Q ss_pred eeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 97 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 97 ~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++++|++.+| +++|+||||||||||+++|.+++.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 5699999999 999999999999999999999987
No 150
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.58 E-value=5.7e-09 Score=106.32 Aligned_cols=48 Identities=17% Similarity=0.269 Sum_probs=44.3
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEe
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 148 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 148 (350)
+++++|.+++|+.++|+||||||||||+++|+|+++ |++|.|.+.|.+
T Consensus 250 l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~-----~~~giitied~~ 297 (511)
T 2oap_1 250 LAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP-----PDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC-----TTCCEEEEESSC
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC-----CCCCEEEEcCcc
Confidence 345889999999999999999999999999999999 999999998854
No 151
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.57 E-value=6.8e-09 Score=105.67 Aligned_cols=48 Identities=25% Similarity=0.299 Sum_probs=40.7
Q ss_pred eEeEEEeCCcEEEEEcCCCChHHHHHHHHHh--ccCCCCCCCcccEEEECCEeCC
Q 018829 98 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISK--VFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 98 ~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~g--l~~~~~~~p~~G~I~i~G~~i~ 150 (350)
.+++++.++..++|.|++||||||++++|.. ++. ++.|++.+.+.|..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~-----~~p~~v~l~liDpK 208 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYK-----AQPEDVRFIMIDPK 208 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTT-----CCTTTEEEEEECCS
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHh-----CCCceEEEEEECCc
Confidence 4889999999999999999999999999886 555 66688887777754
No 152
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.54 E-value=1.6e-08 Score=89.93 Aligned_cols=28 Identities=29% Similarity=0.593 Sum_probs=24.2
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++|++++|+||||||||||+++|+|+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5799999999999999999999999985
No 153
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.52 E-value=4.4e-08 Score=86.10 Aligned_cols=31 Identities=32% Similarity=0.432 Sum_probs=27.4
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 101 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 101 ~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++|++|++++|+||||||||||+++|++++.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4788999999999999999999999999997
No 154
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.47 E-value=2e-07 Score=88.34 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=50.4
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
+.++++++.|+.. .++++|+ +|++++|+|+|||||||++..|++++. +..|+|.+.+.|..
T Consensus 77 ~~~~~l~~~~~~~--------~~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~-----~~~~~v~l~~~d~~ 137 (295)
T 1ls1_A 77 TVYEALKEALGGE--------ARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK-----GKGRRPLLVAADTQ 137 (295)
T ss_dssp HHHHHHHHHTTSS--------CCCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH-----HTTCCEEEEECCSS
T ss_pred HHHHHHHHHHCCC--------CceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEecCCcc
Confidence 4567788888542 1338888 999999999999999999999999999 88899999876654
No 155
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.45 E-value=6.9e-08 Score=85.36 Aligned_cols=46 Identities=13% Similarity=0.160 Sum_probs=25.7
Q ss_pred EECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 83 SYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 83 ~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+|.++....+ ++|+||++++|++++|+||+||||||+.+.|++.+.
T Consensus 5 ~~~~~~~~~~---~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 5 HHHSSGVDLG---TENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp ----------------------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCCCCCCCCC---CCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4544433344 666999999999999999999999999999998774
No 156
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.44 E-value=8.9e-09 Score=91.24 Aligned_cols=61 Identities=16% Similarity=0.215 Sum_probs=42.8
Q ss_pred EEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEE--EECCEeCC
Q 018829 78 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV--TYNSSVGD 150 (350)
Q Consensus 78 ~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I--~i~G~~i~ 150 (350)
+|++..++. +.+ .+..++..++|++++|+||||||||||+++|++.+. ..|.+ +++|.++.
T Consensus 3 ~~~~~~~~~---~~~---~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~------~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 3 TNIKWHECS---VEK---VDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY------QKGKLCYILDGDNVR 65 (200)
T ss_dssp -------CC---CCH---HHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEEHHHHT
T ss_pred CCCcccccc---cCH---HHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH------hcCceEEEecCchhh
Confidence 355555543 333 344777789999999999999999999999999985 35777 88876653
No 157
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.39 E-value=9.6e-08 Score=83.63 Aligned_cols=26 Identities=27% Similarity=0.703 Sum_probs=24.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
|++++|+||||||||||+++|+|+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999997
No 158
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.38 E-value=1.2e-07 Score=82.57 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+|++++|+||||||||||+++|.+.++
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 689999999999999999999999886
No 159
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.36 E-value=4.8e-08 Score=90.08 Aligned_cols=42 Identities=14% Similarity=0.197 Sum_probs=38.8
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHH---hccCCCCCCCcccEEE--------ECCEeCC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRIS---KVFENDKFASERAQVT--------YNSSVGD 150 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~---gl~~~~~~~p~~G~I~--------i~G~~i~ 150 (350)
++|++++|+|||||||||++++|+ |+.. +++|.+. .+|.++.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~-----~d~g~i~r~~~~~~~~~g~~~~ 77 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL-----LDSGAIYRVLALAALHHQVDIS 77 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE-----EEHHHHHHHHHHHHHHTTCCSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc-----CCCCceehHhHHHHHHcCCCcc
Confidence 789999999999999999999999 9998 9999998 8887763
No 160
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.36 E-value=2.4e-07 Score=88.34 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=27.1
Q ss_pred EEEEEcCCCChHHHHHHHHHh-ccCCCCCCCcccEEEECCEeCC
Q 018829 108 SLLLIGPKGSGKSSLVNRISK-VFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g-l~~~~~~~p~~G~I~i~G~~i~ 150 (350)
.+.|+||||+|||||+++|++ ++. |+.|.+.++|.+..
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~-----~~~g~i~~~~~~~~ 76 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFG-----PGVYRLKIDVRQFV 76 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSC-----TTCCC---------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcC-----CCCCeEEecceeec
Confidence 389999999999999999999 788 89999999987653
No 161
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.34 E-value=7.8e-07 Score=86.53 Aligned_cols=52 Identities=13% Similarity=0.161 Sum_probs=41.7
Q ss_pred cCCCCCCHHHHHHHH------HHHHh----------chhhcCCCC---------------CceEEEEec-hHHHhcccEE
Q 018829 245 SMEGDSDVEKQYNQI------VATTF----------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRA 292 (350)
Q Consensus 245 ~~~~~LSGGqrQRva------IArAL----------DEPts~Ld~---------------g~TVIiiTH-~~~~~~aDri 292 (350)
.++..|||||+||++ +|+|| |||+++||. +.+||++|| ..+..+||++
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~ 355 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVI 355 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEE
Confidence 566789999999984 55655 999999873 469999999 4567899999
Q ss_pred EEEec
Q 018829 293 RIRTY 297 (350)
Q Consensus 293 ~v~l~ 297 (350)
++ |+
T Consensus 356 ~~-l~ 359 (371)
T 3auy_A 356 IN-VK 359 (371)
T ss_dssp EE-EE
T ss_pred EE-EE
Confidence 65 65
No 162
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.33 E-value=1.8e-07 Score=82.77 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=31.9
Q ss_pred EeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC
Q 018829 99 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 99 is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 149 (350)
..+..++|++++|+||||||||||+++|++.+ |.+.+++.++
T Consensus 22 ~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~---------g~~~i~~d~~ 63 (200)
T 4eun_A 22 SMMTGEPTRHVVVMGVSGSGKTTIAHGVADET---------GLEFAEADAF 63 (200)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHH---------CCEEEEGGGG
T ss_pred hhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh---------CCeEEccccc
Confidence 34667899999999999999999999999876 5677877554
No 163
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.26 E-value=1.3e-06 Score=87.30 Aligned_cols=46 Identities=11% Similarity=0.190 Sum_probs=37.9
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCccc-EEEECC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNS 146 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G-~I~i~G 146 (350)
|+++..-+++|+++.|.|++|+|||||+..|++... +..| .|.+.+
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~-----~~~g~~Vl~~s 239 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA-----TKTNENVAIFS 239 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH-----HHSSCCEEEEE
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-----HhCCCcEEEEE
Confidence 555777799999999999999999999999999886 6545 566544
No 164
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.26 E-value=2.1e-07 Score=82.55 Aligned_cols=42 Identities=21% Similarity=0.213 Sum_probs=36.9
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 149 (350)
.++|++++|+|+||||||||+++|++++. +..|.|.+.+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~-----~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLR-----EQGISVCVFHMDD 60 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHH-----HTTCCEEEEEGGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHh-----hcCCeEEEeccCc
Confidence 56789999999999999999999999998 8888888766553
No 165
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.22 E-value=1.6e-07 Score=81.34 Aligned_cols=36 Identities=19% Similarity=0.404 Sum_probs=32.0
Q ss_pred eEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCccc
Q 018829 100 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA 140 (350)
Q Consensus 100 s~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G 140 (350)
+|++++|+.++|+||||||||||+++|++.+. |.+|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~-----~~~g 67 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY-----EKKG 67 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH-----HHSC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHH-----HHcC
Confidence 45667899999999999999999999999997 6665
No 166
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.21 E-value=2.1e-07 Score=89.29 Aligned_cols=49 Identities=14% Similarity=0.281 Sum_probs=45.0
Q ss_pred eeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 97 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 97 ~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
++++|++++|++++|+|+|||||||++..|++.+. +..|+|.+.+.|+.
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~-----~~g~kVllid~D~~ 144 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA-----ELGYKVLIAAADTF 144 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH-----HTTCCEEEEECCCS
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEEeCCCc
Confidence 45999999999999999999999999999999999 88899999887764
No 167
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.19 E-value=1.2e-07 Score=92.29 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=34.1
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEE-EECC
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV-TYNS 146 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I-~i~G 146 (350)
+++|+++.|.||+|||||||+..++.... +..|.+ ++++
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~-----~~gg~VlyId~ 97 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQ-----KMGGVAAFIDA 97 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHH-----HTTCCEEEEES
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH-----hcCCeEEEEec
Confidence 88999999999999999999999999987 766766 5544
No 168
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.19 E-value=4.3e-07 Score=77.39 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=32.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCccc--EEEECCEe
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA--QVTYNSSV 148 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G--~I~i~G~~ 148 (350)
+|+.++|+||||||||||+++|++.+. + +| .+++++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~-----~-~g~~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL-----E-AGKNAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH-----T-TTCCEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-----h-cCCcEEEEcHHH
Confidence 899999999999999999999999998 6 47 66666543
No 169
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.18 E-value=1.1e-06 Score=76.81 Aligned_cols=42 Identities=26% Similarity=0.338 Sum_probs=33.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhccCCCCCCC------cccEEEECCEeC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFENDKFAS------ERAQVTYNSSVG 149 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p------~~G~I~i~G~~i 149 (350)
.++|+|+||||||||++.+.|........| ..|+|.++|.++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence 689999999999999999999876211112 578999998765
No 170
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.15 E-value=1.1e-06 Score=78.42 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=26.7
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++|++++|+||||||||||+++|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999999999987
No 171
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.14 E-value=6.4e-07 Score=81.13 Aligned_cols=42 Identities=19% Similarity=0.272 Sum_probs=34.9
Q ss_pred EeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC
Q 018829 99 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 99 is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 149 (350)
-+.+.++|++++|+|+||||||||+++|+++ . |+|.+.+.+.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-~--------g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-K--------NDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG-T--------TTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc-c--------CCeEEEecCH
Confidence 3345578999999999999999999999987 3 7788887654
No 172
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.08 E-value=8.9e-07 Score=90.94 Aligned_cols=43 Identities=19% Similarity=0.287 Sum_probs=37.9
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCccc-EEE-ECCEeC
Q 018829 102 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVT-YNSSVG 149 (350)
Q Consensus 102 ~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G-~I~-i~G~~i 149 (350)
.+++|++++|+|+||||||||+++|++.+. |++| ++. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~-----~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM-----EMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH-----TTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc-----ccCCceEEEECCcHH
Confidence 467999999999999999999999999999 8886 674 888654
No 173
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.05 E-value=6.4e-07 Score=81.78 Aligned_cols=45 Identities=27% Similarity=0.359 Sum_probs=38.9
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 149 (350)
++++++++++| ++|+||||||||||+++|++... .|.+.+++.++
T Consensus 41 ~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-------~~~i~~~~~~~ 85 (254)
T 1ixz_A 41 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSDF 85 (254)
T ss_dssp HHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-------CCEEEEEHHHH
T ss_pred HHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-------CCEEEeeHHHH
Confidence 66699999999 99999999999999999999875 57888877554
No 174
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.05 E-value=7.1e-07 Score=87.53 Aligned_cols=36 Identities=28% Similarity=0.507 Sum_probs=33.2
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
|+++++.+++|++++|+||||||||||+++|++.+.
T Consensus 159 l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 159 LKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp HHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred HHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 566999999999999999999999999999998654
No 175
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.03 E-value=2.5e-06 Score=84.08 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=36.2
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHHhccC-------CCCCCCcccEEEECCE
Q 018829 102 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE-------NDKFASERAQVTYNSS 147 (350)
Q Consensus 102 ~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~-------~~~~~p~~G~I~i~G~ 147 (350)
.+++|..++|+|+||||||||+|+|+|... .....|+.|.+.+.|.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~ 68 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDE 68 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCc
Confidence 457899999999999999999999999211 0111289999999874
No 176
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.03 E-value=2.9e-06 Score=74.20 Aligned_cols=42 Identities=26% Similarity=0.338 Sum_probs=31.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhccCCCCCCC------cccEEEECCEeC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFENDKFAS------ERAQVTYNSSVG 149 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p------~~G~I~i~G~~i 149 (350)
.++|+|+||||||||++.|.|........| ..|.|.++|.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 589999999999999999999753111112 367899998764
No 177
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.02 E-value=4.7e-07 Score=87.03 Aligned_cols=48 Identities=13% Similarity=0.196 Sum_probs=37.3
Q ss_pred CeeEeEEEeCCc------EEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECC
Q 018829 96 MTLSDYDVPKTT------SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 146 (350)
Q Consensus 96 L~~is~~I~~Ge------~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G 146 (350)
|++++..+.+++ ++||+||||||||||+++|.+++... |+.|.+.+-+
T Consensus 76 l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~---~~~~~v~~i~ 129 (321)
T 3tqc_A 76 LQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRW---PDHPNVEVIT 129 (321)
T ss_dssp HHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTS---TTCCCEEEEE
T ss_pred HHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhccc---CCCCeEEEEe
Confidence 555777777776 99999999999999999999998721 3556655433
No 178
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.02 E-value=8.2e-07 Score=82.45 Aligned_cols=45 Identities=27% Similarity=0.359 Sum_probs=39.1
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 149 (350)
+++++|++++| ++|+||||||||||+++|++... .|.|.+++.++
T Consensus 65 l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-------~~~i~~~~~~~ 109 (278)
T 1iy2_A 65 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSDF 109 (278)
T ss_dssp HHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-------CCEEEEEHHHH
T ss_pred HHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-------CCEEEecHHHH
Confidence 66699999999 89999999999999999999875 57888887654
No 179
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.01 E-value=1.4e-05 Score=77.94 Aligned_cols=42 Identities=24% Similarity=0.349 Sum_probs=30.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhccCCC------CCCCcccEEEECCEeC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFEND------KFASERAQVTYNSSVG 149 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~~~------~~~p~~G~I~i~G~~i 149 (350)
+++|+|++|||||||+|.|+|..... ..-+..|.+.++|.++
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v 228 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI 228 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence 49999999999999999999976410 0114568888887553
No 180
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.00 E-value=2.5e-06 Score=76.40 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=27.0
Q ss_pred eEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 100 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 100 s~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
|+...+|++++|+||||||||||+++|.+.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45556899999999999999999999999876
No 181
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.96 E-value=2.8e-06 Score=72.91 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=30.6
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 149 (350)
.+|++++|+||||||||||+++|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~---------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL---------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH---------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh---------CcEEEeCccc
Confidence 468999999999999999999999865 4567766444
No 182
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.96 E-value=3.3e-06 Score=72.08 Aligned_cols=27 Identities=26% Similarity=0.692 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999886
No 183
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.92 E-value=1.1e-06 Score=86.62 Aligned_cols=54 Identities=15% Similarity=0.116 Sum_probs=47.3
Q ss_pred CcEEEEEEEEEECCCceEEecCCCe--------------eEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMT--------------LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~--------------~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.-+.|+||++.|+..... |+ |+.+.|.+|+.++|+||+|+|||||++.|++...
T Consensus 132 ~ri~Fe~ltp~yP~er~~-----Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 132 NKILFENLTPLHANSRLR-----MERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TSCCTTTSCEESCCSBCC-----CCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred CCceeccccccCCCCccc-----cccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 357899999999865433 66 7999999999999999999999999999999874
No 184
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.89 E-value=1.2e-05 Score=68.22 Aligned_cols=34 Identities=32% Similarity=0.379 Sum_probs=27.2
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
+.+.++++.+| +.+|+|||||||||++.+|.-.+
T Consensus 14 ~~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcceEEEcCCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 33466666666 89999999999999999998544
No 185
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.89 E-value=2.4e-06 Score=76.23 Aligned_cols=37 Identities=16% Similarity=0.383 Sum_probs=29.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEE
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 144 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i 144 (350)
+.+++|+||+||||||++++|++.+.-. .++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~--~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWH--LLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCE--EEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC--cccCcceee
Confidence 5689999999999999999999877200 177888776
No 186
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.87 E-value=4.7e-06 Score=71.89 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=32.8
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCccc--EEEECCEeC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA--QVTYNSSVG 149 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G--~I~i~G~~i 149 (350)
++|++++|+|++||||||++++|++.+. + .| .+.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~-----~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV-----C-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH-----H-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh-----h-CCCcEEEECChHH
Confidence 4689999999999999999999999887 5 46 666666444
No 187
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.87 E-value=3.9e-06 Score=79.48 Aligned_cols=40 Identities=15% Similarity=0.423 Sum_probs=34.7
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCccc-EEEECCEe
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSSV 148 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G-~I~i~G~~ 148 (350)
.+|++++|+|||||||||+++.|++.+. +++| +|.+-+.|
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~-----~~~G~~V~lv~~D 143 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM-----LEKHKKIAFITTD 143 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH-----HTTCCCEEEEECC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH-----HhcCCEEEEEecC
Confidence 4789999999999999999999999998 8778 67665544
No 188
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.85 E-value=5e-06 Score=73.41 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=27.9
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 101 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 101 ~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
=++++|.+++|+|++|||||||+++|++.++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3567899999999999999999999999874
No 189
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.85 E-value=1.6e-06 Score=83.43 Aligned_cols=64 Identities=14% Similarity=0.110 Sum_probs=49.7
Q ss_pred EEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC
Q 018829 75 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 75 l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 149 (350)
++.+++.+.|.. ..+ ++++++.+.+|.+++|+|++|||||||++.|++.+. +..++|.+-+.+.
T Consensus 31 ie~~~~~~~~~~---~~~---~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~-----~~~~~v~v~~~d~ 94 (341)
T 2p67_A 31 VESRHPRHQALS---TQL---LDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI-----REGLKVAVIAVDP 94 (341)
T ss_dssp HHCCCHHHHHHH---HHH---HHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH-----HTTCCEEEEEECC
T ss_pred hhcCCchhhhHH---HHH---HHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH-----hcCCeEEEEeecC
Confidence 444555555532 123 566899999999999999999999999999999998 7778887766655
No 190
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.83 E-value=5.4e-06 Score=80.19 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=36.2
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
+++.+++|+|++|||||||+|.|.|.+. +..|+|.+.+.+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~-----~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT-----ERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh-----hcCCeEEEEeecCC
Confidence 3467899999999999999999999998 88888888776654
No 191
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.78 E-value=5e-06 Score=87.13 Aligned_cols=46 Identities=20% Similarity=0.264 Sum_probs=34.3
Q ss_pred eEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC
Q 018829 100 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 100 s~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 149 (350)
|++++++..++|+|++|||||||++.|.+..... +..|+| .+|..+
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~---~~~G~V-~~g~~~ 48 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK---ERRGRV-EEGTTT 48 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS---SSCCCG-GGTCCS
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC---Ccccee-cCCccc
Confidence 4677889999999999999999999999876510 366877 555443
No 192
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.77 E-value=1.1e-05 Score=73.22 Aligned_cols=43 Identities=19% Similarity=0.356 Sum_probs=31.7
Q ss_pred CeeEeEEEe---CCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEE
Q 018829 96 MTLSDYDVP---KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 144 (350)
Q Consensus 96 L~~is~~I~---~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i 144 (350)
|.++||.+. +|.+++|.|++||||||+++.|...+. + .+.+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~-----~-~~~~~~ 58 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV-----K-DYDVIM 58 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT-----T-TSCEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh-----c-CCCcee
Confidence 556888887 899999999999999999999999998 6 555544
No 193
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.73 E-value=1e-05 Score=71.86 Aligned_cols=44 Identities=18% Similarity=0.238 Sum_probs=37.9
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCccc--EEEECCEeC
Q 018829 101 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA--QVTYNSSVG 149 (350)
Q Consensus 101 ~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G--~I~i~G~~i 149 (350)
+.+++|.+++|+|++||||||+++.|.+.+. |..| .+.+++..+
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~-----~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV-----RDRRVHAYRLDGDNI 65 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH-----HHHCCCEEEECHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc-----cccCCcEEEECChHH
Confidence 3457899999999999999999999999998 8888 888876443
No 194
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.66 E-value=4.3e-05 Score=68.07 Aligned_cols=34 Identities=32% Similarity=0.379 Sum_probs=27.2
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
+.+.++++.+| +.+|+|||||||||++.+|.-.+
T Consensus 14 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEeCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 33466677665 99999999999999999987544
No 195
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.64 E-value=6.6e-06 Score=85.08 Aligned_cols=49 Identities=20% Similarity=0.336 Sum_probs=43.2
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcc-cEEEECCEeC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER-AQVTYNSSVG 149 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~-G~I~i~G~~i 149 (350)
++++++.+.+|+.++|+||||||||||+++|++++. +.. |.+.+++.+.
T Consensus 50 l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~-----~~~~~~~~~~~~~~ 99 (604)
T 3k1j_A 50 VEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP-----TETLEDILVFPNPE 99 (604)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC-----CSSCEEEEEECCTT
T ss_pred HhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC-----cccCCeEEEeCCcc
Confidence 566999999999999999999999999999999998 766 7787776544
No 196
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.64 E-value=7.7e-06 Score=83.68 Aligned_cols=46 Identities=26% Similarity=0.388 Sum_probs=39.5
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCE
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 147 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~ 147 (350)
+.++++++ +|++++|+||||+|||||+++|++.+. +..|.|.+.|.
T Consensus 99 l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~-----~~~~~i~~~~~ 144 (543)
T 3m6a_A 99 VQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG-----RKFVRISLGGV 144 (543)
T ss_dssp HHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT-----CEEEEECCCC-
T ss_pred HHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC-----CCeEEEEeccc
Confidence 44477777 899999999999999999999999998 78888887763
No 197
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.60 E-value=4.6e-05 Score=66.10 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=20.7
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHh
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~g 128 (350)
++++++..++. .++|+|++|+|||||++.+.+
T Consensus 14 l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 14 LASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 56699998887 778999999999999999987
No 198
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.60 E-value=1.7e-05 Score=78.93 Aligned_cols=59 Identities=12% Similarity=0.162 Sum_probs=47.8
Q ss_pred EEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 77 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 77 i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
.+++++.|+.. -++++|+ ++++++++|++||||||++..|++.+. +..++|.+.+.|..
T Consensus 79 ~~~L~~~~~~~--------~~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~-----~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 79 YEALKEALGGE--------ARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK-----GKGRRPLLVAADTQ 137 (425)
T ss_dssp HHHHHHHTTSS--------CCCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH-----TTTCCEEEEECCSS
T ss_pred HHHHHHHhCCC--------cccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEeecccc
Confidence 34566677542 1237787 899999999999999999999999999 88889998877764
No 199
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.59 E-value=5.1e-05 Score=64.86 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=23.3
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
++|..++|+|++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367889999999999999999999864
No 200
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.57 E-value=4.3e-05 Score=68.37 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=30.4
Q ss_pred eEEEeCCcEEEEEcCCCChHHHHHHHH-HhccCCCCCCCcccEEEECC
Q 018829 100 DYDVPKTTSLLLIGPKGSGKSSLVNRI-SKVFENDKFASERAQVTYNS 146 (350)
Q Consensus 100 s~~I~~Ge~iaIvGpnGsGKSTLl~~I-~gl~~~~~~~p~~G~I~i~G 146 (350)
.--+++|++++|+||||||||||+..+ ....+ ...+.++++.
T Consensus 17 ~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~-----~~~~v~~~~~ 59 (247)
T 2dr3_A 17 HGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLK-----MGEPGIYVAL 59 (247)
T ss_dssp TTSEETTCEEEEEECTTSSHHHHHHHHHHHHHH-----TTCCEEEEES
T ss_pred CCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh-----cCCeEEEEEc
Confidence 446899999999999999999996555 45544 3334445544
No 201
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.55 E-value=3.7e-05 Score=67.62 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
+++|+||+||||||+.++|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999998
No 202
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.54 E-value=3.2e-05 Score=67.22 Aligned_cols=31 Identities=29% Similarity=0.576 Sum_probs=26.8
Q ss_pred EeEEEeCCcEEEEEcCCCChHHHHHHHHHhc
Q 018829 99 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 99 is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl 129 (350)
+||+.++|..++|+|++||||||+.+.|+..
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 3 GSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ---CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 8899999999999999999999999999876
No 203
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.54 E-value=2.3e-05 Score=75.58 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=31.1
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHh--ccCCCCCCCcccEEEE
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK--VFENDKFASERAQVTY 144 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~g--l~~~~~~~p~~G~I~i 144 (350)
|++++++++ .++|+|++|||||||++.|.| +++ +..|.+.-
T Consensus 27 l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp-----~~~~~vT~ 69 (360)
T 3t34_A 27 LPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLP-----RGSGIVTR 69 (360)
T ss_dssp C----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSC-----CCSSSCCC
T ss_pred cccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCC-----CCCCcccC
Confidence 666999998 899999999999999999999 666 55565543
No 204
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.53 E-value=3.6e-05 Score=67.97 Aligned_cols=30 Identities=27% Similarity=0.659 Sum_probs=26.2
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 102 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 102 ~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
...+|.+++|+||||||||||++.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 345789999999999999999999998775
No 205
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.51 E-value=4.1e-05 Score=66.32 Aligned_cols=39 Identities=26% Similarity=0.504 Sum_probs=32.2
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEE-EECC
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV-TYNS 146 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I-~i~G 146 (350)
..+|.+++|+|++||||||+++.|+..+. +..+.+ .+++
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~-----~~~~~~~~~~~ 49 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQ-----KEGYRVEVLDG 49 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHH-----hcCCeEEEeeH
Confidence 45789999999999999999999999987 665655 3444
No 206
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.50 E-value=1.2e-05 Score=70.36 Aligned_cols=32 Identities=16% Similarity=0.368 Sum_probs=27.9
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHh
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~g 128 (350)
++++||..++. .++|+|++|+|||||++.+.+
T Consensus 16 l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 16 LQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 56688888777 578999999999999999986
No 207
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.48 E-value=1.3e-05 Score=75.85 Aligned_cols=60 Identities=12% Similarity=0.117 Sum_probs=47.3
Q ss_pred EEEEEEEECCCceEEecCCCee-EeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 77 AKNKILSYTPGAWIENVGGMTL-SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 77 i~~l~~~y~~~~~~~~l~~L~~-is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
.+++...|++. .++ ++|+.+ +++++++|++|+||||++..|++.+. +..++|.+.+.|..
T Consensus 77 ~~~l~~~~~~~--------~~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~-----~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 77 YDELSNLFGGD--------KEPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK-----KKGFKVGLVGADVY 137 (297)
T ss_dssp HHHHHHHTTCS--------CCCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH-----HTTCCEEEEECCCS
T ss_pred HHHHHHHhccc--------cccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEEecCCC
Confidence 44556666532 234 677766 99999999999999999999999998 88889998777654
No 208
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.44 E-value=0.00013 Score=70.65 Aligned_cols=32 Identities=31% Similarity=0.364 Sum_probs=27.8
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHh
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~g 128 (350)
+++..+++.+| +.+|+|||||||||++.+|.=
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 55578888776 899999999999999999974
No 209
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.43 E-value=9.1e-05 Score=63.26 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.++|+|++|+|||||++.|.+.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 210
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.43 E-value=5.8e-05 Score=66.14 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
+++|+|++||||||++++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 211
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.40 E-value=0.00014 Score=61.40 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|++|+|||||++.+.|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 212
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.39 E-value=3.3e-05 Score=78.31 Aligned_cols=45 Identities=27% Similarity=0.359 Sum_probs=38.2
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 149 (350)
++++++.+++| ++|+||+|+|||||+++|++... .+.+.+++.++
T Consensus 56 ~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-------~~~i~i~g~~~ 100 (499)
T 2dhr_A 56 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSDF 100 (499)
T ss_dssp TTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-------CCEEEEEGGGG
T ss_pred hhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-------CCEEEEehhHH
Confidence 45588999999 89999999999999999999875 46788887665
No 213
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.38 E-value=0.00011 Score=72.78 Aligned_cols=43 Identities=19% Similarity=0.177 Sum_probs=31.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC-------CCCCCCcccEEEECCEeC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE-------NDKFASERAQVTYNSSVG 149 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~-------~~~~~p~~G~I~i~G~~i 149 (350)
-.++|+|+||||||||+|.|.|... ...-.+..|.+.++|.++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 3799999999999999999999753 000115568899998754
No 214
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.27 E-value=0.00014 Score=63.60 Aligned_cols=40 Identities=13% Similarity=0.172 Sum_probs=29.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEe
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 148 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 148 (350)
.+++|+|+||||||||++.|.+.+.... ..-|.|..++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g--~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARG--IRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccC--CceeEEeeCCCc
Confidence 5799999999999999999999875111 123667765543
No 215
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.26 E-value=0.0001 Score=64.68 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..+++|+|++|||||||++.|++.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998763
No 216
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.21 E-value=0.00014 Score=71.64 Aligned_cols=46 Identities=13% Similarity=0.190 Sum_probs=32.9
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHHhccC------CCCCCCcccEEEECCE
Q 018829 102 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE------NDKFASERAQVTYNSS 147 (350)
Q Consensus 102 ~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~------~~~~~p~~G~I~i~G~ 147 (350)
.+..+..++|+|++|+|||||+|+|.|.-. .....|..|.+.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 346778899999999999999999999721 0111277888887663
No 217
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.21 E-value=0.00014 Score=62.41 Aligned_cols=27 Identities=22% Similarity=0.613 Sum_probs=23.3
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999998644
No 218
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.18 E-value=0.00011 Score=69.47 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
++.+++|+|++|||||||+|.|.|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 34489999999999999999999864
No 219
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.17 E-value=0.00018 Score=61.86 Aligned_cols=24 Identities=33% Similarity=0.704 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++|+|++|||||||++.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~ 27 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKK 27 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999999754
No 220
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.17 E-value=0.00017 Score=60.72 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++|+|++||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987764
No 221
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.14 E-value=0.0004 Score=67.00 Aligned_cols=36 Identities=14% Similarity=0.078 Sum_probs=30.0
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
|+.+.--+++|+++.|.|++|+|||||+..++....
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 433544589999999999999999999999887665
No 222
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.13 E-value=0.00026 Score=60.38 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998775
No 223
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.11 E-value=2.8e-05 Score=75.46 Aligned_cols=47 Identities=17% Similarity=0.165 Sum_probs=33.5
Q ss_pred CcEEEEEEEEEECCCceEEecCCCeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 73 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 73 ~~l~i~~l~~~y~~~~~~~~l~~L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..+.+.++...|... .+ +++++|.| +|+|++|+|||||++.|.+...
T Consensus 16 ~~v~~~~l~~~~~~k---~~---~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 16 GYVGFANLPNQVHRK---SV---KKGFEFTL------MVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp -----CCHHHHHHTH---HH---HHCCEECE------EECCCTTSCHHHHHHHHTTCCC
T ss_pred ceEEeccchHHhCCe---ee---cCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC
Confidence 457888888888542 23 45588876 9999999999999999988654
No 224
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.09 E-value=0.00026 Score=63.82 Aligned_cols=29 Identities=41% Similarity=0.565 Sum_probs=24.5
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 102 DVPKTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 102 ~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
+=.+|.+++|+|++||||||+.++|++.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34578899999999999999999999744
No 225
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.06 E-value=0.00024 Score=65.05 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=32.0
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeC
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 149 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 149 (350)
.+++.++.|+|++||||||+.+.|+..+. . +.+.+++..+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~-----~--~~~~~~~D~~ 68 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ-----G--NIVIIDGDSF 68 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT-----T--CCEEECGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC-----C--CcEEEecHHH
Confidence 45677899999999999999999998775 2 4577777443
No 226
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.04 E-value=0.00019 Score=65.22 Aligned_cols=31 Identities=32% Similarity=0.594 Sum_probs=24.2
Q ss_pred EeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 99 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 99 is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++.+++| +.|+||+|+|||||+++|++.+.
T Consensus 40 ~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 40 LGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp ---CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 44444555 88999999999999999999875
No 227
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.04 E-value=0.00087 Score=57.68 Aligned_cols=41 Identities=22% Similarity=0.255 Sum_probs=26.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhccCCCCCCCccc----EEEECCEe
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFENDKFASERA----QVTYNSSV 148 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G----~I~i~G~~ 148 (350)
.++|+|++|+|||||++.+.+-.-.....|+.+ .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 588999999999999976554321111226655 45555543
No 228
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.04 E-value=0.00013 Score=63.96 Aligned_cols=24 Identities=33% Similarity=0.641 Sum_probs=22.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++|+|++||||||+++.|...+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999886
No 229
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.00 E-value=0.00037 Score=59.68 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999998654
No 230
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.00 E-value=0.00033 Score=58.59 Aligned_cols=19 Identities=37% Similarity=0.634 Sum_probs=18.3
Q ss_pred EEEEEcCCCChHHHHHHHH
Q 018829 108 SLLLIGPKGSGKSSLVNRI 126 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I 126 (350)
+++|+||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 231
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.99 E-value=6.7e-05 Score=72.92 Aligned_cols=36 Identities=25% Similarity=0.586 Sum_probs=31.4
Q ss_pred CeeEeEEEeCCcE--EEEEcCCCChHHHHHHHHHhccC
Q 018829 96 MTLSDYDVPKTTS--LLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 96 L~~is~~I~~Ge~--iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++.+++.+++|++ ++|+|++||||||+.++|++.+.
T Consensus 12 l~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 12 LQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4457788888988 99999999999999999999764
No 232
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.95 E-value=3.2e-05 Score=73.70 Aligned_cols=36 Identities=28% Similarity=0.400 Sum_probs=32.6
Q ss_pred CeeEeEEEeCCcE--EEEEcCCCChHHHHHHHHHhccC
Q 018829 96 MTLSDYDVPKTTS--LLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 96 L~~is~~I~~Ge~--iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++.++..|..|++ +.+.||+|+||||+++++++.+.
T Consensus 34 ~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 34 ITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 5558888899988 99999999999999999999886
No 233
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.94 E-value=0.00037 Score=60.34 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++|+|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998665
No 234
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.93 E-value=0.00051 Score=61.79 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=22.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++|+|++|+|||||++.|.|...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 589999999999999999999766
No 235
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.92 E-value=0.00037 Score=63.78 Aligned_cols=25 Identities=28% Similarity=0.570 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.-+++|+||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999544
No 236
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.89 E-value=0.00045 Score=59.43 Aligned_cols=28 Identities=14% Similarity=0.373 Sum_probs=24.1
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3567899999999999999999987553
No 237
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.88 E-value=0.00046 Score=66.66 Aligned_cols=30 Identities=20% Similarity=0.416 Sum_probs=26.5
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 102 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 102 ~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
-+++|+++.|.||+|||||||+..++....
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999888876655
No 238
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.88 E-value=0.00053 Score=60.72 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHh
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~g 128 (350)
.+-+++|+|++||||||++++|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 239
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.87 E-value=0.00055 Score=58.74 Aligned_cols=26 Identities=35% Similarity=0.588 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+..+.|+|++||||||+.+.|+..+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999987654
No 240
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.86 E-value=0.00048 Score=63.18 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++|+||+|||||||.+.|++-+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 689999999999999999998664
No 241
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.85 E-value=0.00054 Score=59.38 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhc
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl 129 (350)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999875
No 242
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.84 E-value=0.0004 Score=59.31 Aligned_cols=24 Identities=38% Similarity=0.665 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++|+|++||||||+.+.|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998664
No 243
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.83 E-value=0.00067 Score=58.94 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
+|-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999866
No 244
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.82 E-value=0.00061 Score=57.75 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHh
Q 018829 107 TSLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~g 128 (350)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999987
No 245
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.81 E-value=0.0004 Score=69.18 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=35.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEeCC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 150 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 150 (350)
++.+++++||+||||||++..|++.+. +..++|.+-+.|..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~-----~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK-----KRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH-----HTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEEecCcc
Confidence 578999999999999999999999998 87788888666653
No 246
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.79 E-value=0.00059 Score=60.26 Aligned_cols=23 Identities=30% Similarity=0.769 Sum_probs=20.3
Q ss_pred EEEEcCCCChHHHHHHHHHhccC
Q 018829 109 LLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 109 iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+.|+||||||||||++.|..-++
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999876654
No 247
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.77 E-value=0.00061 Score=58.36 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++.++.|+|++||||||+.+.|+..+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 4567899999999999999999986553
No 248
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.76 E-value=0.00039 Score=74.28 Aligned_cols=31 Identities=26% Similarity=0.491 Sum_probs=28.7
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 101 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 101 ~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
|.+++++.++|+||+|||||||+++|++.+.
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 4678999999999999999999999999876
No 249
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.75 E-value=0.00077 Score=58.66 Aligned_cols=27 Identities=33% Similarity=0.379 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+|.+++|.|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998776
No 250
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.73 E-value=0.00069 Score=65.79 Aligned_cols=36 Identities=14% Similarity=0.112 Sum_probs=30.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEEC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 145 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~ 145 (350)
.+..++|+||+|||||||++.|...+. +..+.|.+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~-----~~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY-----MQGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH-----TTTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH-----HCCCEEEEE
Confidence 567899999999999999999999887 666777764
No 251
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.72 E-value=0.0008 Score=58.81 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=24.7
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+|.+++|.|+.||||||+.+.|+..+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999987654
No 252
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.71 E-value=0.00083 Score=57.87 Aligned_cols=27 Identities=30% Similarity=0.594 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++.+++|+|+.||||||+.+.|+..+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 567899999999999999999987654
No 253
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.70 E-value=0.00071 Score=58.85 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++|.|++||||||+.+.|+..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999998654
No 254
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.69 E-value=0.0012 Score=64.13 Aligned_cols=41 Identities=20% Similarity=0.168 Sum_probs=30.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhcc------CCCCCCCcccEEEECC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVF------ENDKFASERAQVTYNS 146 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~------~~~~~~p~~G~I~i~G 146 (350)
|-.++|+|.+|+|||||+|.|.+-. +.....|+.|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 3568999999999999999999832 1111237778888766
No 255
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.68 E-value=0.001 Score=56.96 Aligned_cols=23 Identities=26% Similarity=0.619 Sum_probs=20.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl 129 (350)
-.++|+|++|+|||||++.+.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999875
No 256
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.68 E-value=0.00087 Score=58.60 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=25.1
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..+|-+++|+|+.||||||+.+.|+..+.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999999997654
No 257
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.67 E-value=0.00093 Score=57.22 Aligned_cols=26 Identities=23% Similarity=0.509 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+.+++|+|+.||||||+.+.|+..+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999986553
No 258
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.66 E-value=0.00084 Score=57.41 Aligned_cols=24 Identities=21% Similarity=0.535 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++.|.|++||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998765
No 259
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.61 E-value=0.00073 Score=63.33 Aligned_cols=30 Identities=27% Similarity=0.545 Sum_probs=26.0
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 102 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 102 ~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++++..+.|.||+|+|||||+++|++...
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 345677899999999999999999998765
No 260
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.60 E-value=0.00093 Score=61.52 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++|+|++|||||||++.|.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999998753
No 261
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.60 E-value=0.00096 Score=58.08 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=22.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+++|+|++|||||||++.|.+.+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4789999999999999999999875
No 262
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.60 E-value=0.0028 Score=55.52 Aligned_cols=23 Identities=39% Similarity=0.726 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|++|+|||||++.+.+-.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999887643
No 263
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.59 E-value=0.00082 Score=57.34 Aligned_cols=27 Identities=19% Similarity=0.437 Sum_probs=19.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++.++.|.|++||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 567899999999999999999987654
No 264
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.58 E-value=0.00089 Score=62.70 Aligned_cols=35 Identities=31% Similarity=0.405 Sum_probs=27.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 146 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G 146 (350)
.+.++.|.||+||||||+.+.|..-++ .+.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~-------~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ-------GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT-------TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-------CCeEEEec
Confidence 356899999999999999999987553 24566654
No 265
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.58 E-value=0.0011 Score=57.13 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++|.|+.||||||+.+.|...+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998774
No 266
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.0011 Score=56.63 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=22.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
-.++|+|++|||||||++.|.+-..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3689999999999999999998653
No 267
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.57 E-value=0.0016 Score=56.56 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 68999999999999999997654
No 268
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.55 E-value=0.0019 Score=53.33 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|||||||++.+.+-.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
No 269
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.55 E-value=0.0034 Score=54.35 Aligned_cols=23 Identities=52% Similarity=0.663 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998744
No 270
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.50 E-value=0.0014 Score=53.89 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 271
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.49 E-value=0.0014 Score=56.64 Aligned_cols=29 Identities=24% Similarity=0.530 Sum_probs=24.8
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++.+.+++|+|+.||||||+.+.|+..+.
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34567899999999999999999987654
No 272
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.48 E-value=0.0026 Score=52.65 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998765
No 273
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.48 E-value=0.003 Score=52.13 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998743
No 274
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.48 E-value=0.0026 Score=52.55 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|||||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 275
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.47 E-value=0.0014 Score=53.83 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++++|+.|||||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998754
No 276
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.47 E-value=0.0015 Score=53.72 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999988643
No 277
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.47 E-value=0.0013 Score=60.87 Aligned_cols=31 Identities=26% Similarity=0.558 Sum_probs=26.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEE
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV 142 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I 142 (350)
..+.|+||+|+|||||+++|++.+. +..+.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~-----~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLF-----DTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHH-----SCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHc-----CCCcce
Confidence 5789999999999999999999987 655544
No 278
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.46 E-value=0.0026 Score=60.67 Aligned_cols=45 Identities=22% Similarity=0.265 Sum_probs=34.7
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHh----ccCCCCCCCcccEEEECC
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK----VFENDKFASERAQVTYNS 146 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~g----l~~~~~~~p~~G~I~i~G 146 (350)
++...+++ .|.-++|+|+||+|||||+..|.+ +.. .+...|...+
T Consensus 135 ~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~-----dD~~~i~~~~ 183 (314)
T 1ko7_A 135 LHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVA-----DDNVEIREIS 183 (314)
T ss_dssp EESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEE-----SSEEEEEESS
T ss_pred eeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceec-----CCeEEEEEcC
Confidence 44488888 788999999999999999999987 554 4445555443
No 279
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.46 E-value=0.0015 Score=54.52 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999998754
No 280
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.46 E-value=0.0016 Score=54.01 Aligned_cols=22 Identities=45% Similarity=0.573 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 281
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.45 E-value=0.0014 Score=57.60 Aligned_cols=24 Identities=29% Similarity=0.645 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++|+||+||||||+.+.|+.-+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999976553
No 282
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.44 E-value=0.0019 Score=54.14 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
+.-.++|+|++|||||||++.+.+-.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 44578999999999999999998743
No 283
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.43 E-value=0.0016 Score=53.59 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|||||||++.+.+-.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998743
No 284
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.43 E-value=0.0013 Score=54.62 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++|+|++|+|||||++.+.+...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 578999999999999999987543
No 285
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.43 E-value=0.0017 Score=57.49 Aligned_cols=27 Identities=30% Similarity=0.679 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+|-+++|+|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 567899999999999999999987664
No 286
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.42 E-value=0.0016 Score=55.85 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++|.|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998663
No 287
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.42 E-value=0.0017 Score=54.87 Aligned_cols=25 Identities=44% Similarity=0.635 Sum_probs=22.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++++|+|+.||||||+.+.|+..+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999987654
No 288
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.41 E-value=0.0017 Score=54.47 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|||||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999988754
No 289
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.41 E-value=0.0017 Score=53.91 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998654
No 290
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.40 E-value=0.0017 Score=54.01 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++|+|++|+|||||++.+.+...
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~~ 27 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQG 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHhccC
Confidence 478999999999999999986443
No 291
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.40 E-value=0.0014 Score=55.36 Aligned_cols=25 Identities=12% Similarity=0.569 Sum_probs=21.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+++|+|++||||||+.+.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999987654
No 292
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.40 E-value=0.0016 Score=58.02 Aligned_cols=28 Identities=32% Similarity=0.637 Sum_probs=23.0
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++.+++|+|+.||||||+.+.|+.-+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3567899999999999999999986553
No 293
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.39 E-value=0.0019 Score=56.28 Aligned_cols=27 Identities=26% Similarity=0.596 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+-+++|+|+.||||||+.+.|+..+.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999987654
No 294
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.38 E-value=0.0016 Score=53.88 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
No 295
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.38 E-value=0.0018 Score=54.47 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987554
No 296
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.37 E-value=0.0018 Score=54.18 Aligned_cols=23 Identities=43% Similarity=0.625 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|||||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998654
No 297
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.35 E-value=0.0016 Score=55.34 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|||||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999998764
No 298
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.35 E-value=0.0016 Score=55.68 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHhcc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
-.++|+|+.|+|||||++.|.+-.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998753
No 299
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.35 E-value=0.0018 Score=57.08 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++|+||+||||||+.+.|+.-+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999976554
No 300
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.35 E-value=0.0018 Score=54.26 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 301
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.35 E-value=0.0016 Score=54.47 Aligned_cols=23 Identities=48% Similarity=0.673 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998754
No 302
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.34 E-value=0.0018 Score=58.96 Aligned_cols=25 Identities=36% Similarity=0.476 Sum_probs=21.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
-.++|+|++|+|||||+|.|.|--.
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSCC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3689999999999999999998554
No 303
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.33 E-value=0.0018 Score=55.37 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..+++|+|+.||||||+.+.|+..+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999987553
No 304
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.33 E-value=0.002 Score=54.79 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999999864
No 305
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.32 E-value=0.0018 Score=58.91 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
-+++|.|++||||||+.+.|+..+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4799999999999999999988554
No 306
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.31 E-value=0.0016 Score=55.80 Aligned_cols=25 Identities=36% Similarity=0.624 Sum_probs=21.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+++|+|++||||||+.+.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999987654
No 307
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.30 E-value=0.0016 Score=57.75 Aligned_cols=27 Identities=19% Similarity=0.398 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+.++.|+|++||||||+.+.|+.-+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999987664
No 308
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.30 E-value=0.0033 Score=53.11 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 309
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.30 E-value=0.0021 Score=53.07 Aligned_cols=22 Identities=50% Similarity=0.631 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 310
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.29 E-value=0.002 Score=56.06 Aligned_cols=27 Identities=19% Similarity=0.551 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
...+++|+|+.||||||+.+.|+..+.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 345799999999999999999986553
No 311
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.28 E-value=0.0022 Score=54.19 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.|.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48899999999999999998744
No 312
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.26 E-value=0.0019 Score=54.76 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999998753
No 313
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.26 E-value=0.0023 Score=53.15 Aligned_cols=23 Identities=26% Similarity=0.621 Sum_probs=20.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl 129 (350)
-.++|+|+.|+|||||++.+.+-
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999763
No 314
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.26 E-value=0.0021 Score=59.80 Aligned_cols=23 Identities=43% Similarity=0.523 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|++|||||||++.|.|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 315
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.25 E-value=0.0025 Score=54.15 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++|+|+.|+|||||++.+.+...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 578999999999999999998775
No 316
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.24 E-value=0.0014 Score=58.92 Aligned_cols=26 Identities=19% Similarity=0.475 Sum_probs=22.0
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHh
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~g 128 (350)
+.+|+.++|+||+||||||++.++..
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 35689999999999999998887653
No 317
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.24 E-value=0.0022 Score=56.56 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=21.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhcc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
-+++|+|+.||||||+.+.|...+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999998754
No 318
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.23 E-value=0.0024 Score=54.70 Aligned_cols=23 Identities=35% Similarity=0.670 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998744
No 319
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.22 E-value=0.0025 Score=52.68 Aligned_cols=22 Identities=18% Similarity=0.533 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.++|+|++|+|||||++.+.+-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999763
No 320
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.22 E-value=0.0026 Score=53.32 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 47999999999999999998643
No 321
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.20 E-value=0.0023 Score=53.42 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
No 322
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.20 E-value=0.00086 Score=67.55 Aligned_cols=32 Identities=31% Similarity=0.556 Sum_probs=26.9
Q ss_pred eEeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 98 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 98 ~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++++.+++| +.|+||+|+|||||+++|++...
T Consensus 43 ~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 43 RIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp TTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC
Confidence 356667777 78999999999999999998664
No 323
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.20 E-value=0.0027 Score=55.81 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+..+.|.||+|+|||||++.++..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999998776
No 324
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.18 E-value=0.0026 Score=53.07 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 325
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.18 E-value=0.0026 Score=53.47 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 58999999999999999998643
No 326
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.17 E-value=0.0027 Score=53.31 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998744
No 327
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.17 E-value=0.0038 Score=59.85 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=25.9
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHHhc
Q 018829 102 DVPKTTSLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 102 ~I~~Ge~iaIvGpnGsGKSTLl~~I~gl 129 (350)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999998875
No 328
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.17 E-value=0.0029 Score=54.96 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..+.|.||+|+|||||+++|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999998776
No 329
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.16 E-value=0.0045 Score=58.70 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=26.2
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 102 DVPKTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 102 ~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
-+++|+++.|.||+|||||||+..++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 48999999999999999999999888754
No 330
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.16 E-value=0.0027 Score=54.08 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++++|+.|||||||++.|.+-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 331
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.15 E-value=0.006 Score=52.38 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998644
No 332
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.14 E-value=0.0013 Score=61.64 Aligned_cols=27 Identities=22% Similarity=0.530 Sum_probs=20.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++-+++|.||+||||||+.+.|...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345899999999999999999988654
No 333
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.14 E-value=0.0015 Score=55.09 Aligned_cols=23 Identities=26% Similarity=0.651 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHh
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~g 128 (350)
.-.++|+|++|||||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999998873
No 334
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.14 E-value=0.0029 Score=53.15 Aligned_cols=23 Identities=52% Similarity=0.661 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 335
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.13 E-value=0.0029 Score=58.02 Aligned_cols=27 Identities=26% Similarity=0.538 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999998653
No 336
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.11 E-value=0.0023 Score=59.06 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|++|+|||||+|.|.+--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999987644
No 337
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.11 E-value=0.0029 Score=55.34 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=21.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
-.++|+|++|+|||||++.|.+-..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~~ 37 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDSV 37 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3689999999999999999998653
No 338
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.10 E-value=0.0021 Score=60.73 Aligned_cols=27 Identities=22% Similarity=0.508 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+..+.|.||+|+|||||++.+++.+.
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999999886
No 339
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.10 E-value=0.003 Score=57.37 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++-+++|+||+||||||+.+.|+.-+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 455799999999999999999986553
No 340
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.08 E-value=0.0029 Score=53.52 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998654
No 341
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.08 E-value=0.0054 Score=52.23 Aligned_cols=23 Identities=48% Similarity=0.650 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 342
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.07 E-value=0.0065 Score=51.20 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 57899999999999999998643
No 343
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.06 E-value=0.0051 Score=52.44 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 344
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.06 E-value=0.0052 Score=52.72 Aligned_cols=23 Identities=39% Similarity=0.589 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 345
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.06 E-value=0.0028 Score=59.02 Aligned_cols=23 Identities=43% Similarity=0.536 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHHh
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~g 128 (350)
.-+++|+|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999984
No 346
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.05 E-value=0.0033 Score=54.22 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 347
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.05 E-value=0.0059 Score=51.90 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|++|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
No 348
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.05 E-value=0.0063 Score=51.96 Aligned_cols=23 Identities=43% Similarity=0.560 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCcHHHHHHHHHcCC
Confidence 58999999999999999998743
No 349
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.05 E-value=0.0026 Score=61.15 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.-.++|+|++|+|||||++.|.+..
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999999865
No 350
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.04 E-value=0.003 Score=57.36 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhcc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
-.++|+|++|||||||++.|.|-.
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998754
No 351
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.04 E-value=0.0018 Score=56.71 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=21.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhcc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
-.++|+|++|||||||++.|.+-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998864
No 352
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.03 E-value=0.0035 Score=57.88 Aligned_cols=26 Identities=35% Similarity=0.641 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+..+.|.||+|+|||||+++|++.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 45689999999999999999998765
No 353
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.02 E-value=0.0033 Score=56.12 Aligned_cols=24 Identities=33% Similarity=0.709 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++|+|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999986553
No 354
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.02 E-value=0.0038 Score=52.38 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+..+.|.||.|+|||||++.++..+.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999998775
No 355
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.02 E-value=0.0067 Score=51.05 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 588999999999999999984
No 356
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.01 E-value=0.0063 Score=52.60 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=21.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
-.++|+|+.|+|||||++.+.+-..
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~~ 49 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGEF 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC
Confidence 4689999999999999999998553
No 357
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.01 E-value=0.0033 Score=53.33 Aligned_cols=26 Identities=19% Similarity=0.466 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
+.-.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578999999999999999998754
No 358
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.00 E-value=0.0033 Score=59.25 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
+++|+|++|+|||||+|.|.|--
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 69999999999999999999853
No 359
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.99 E-value=0.0047 Score=58.64 Aligned_cols=24 Identities=21% Similarity=0.555 Sum_probs=22.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+.|.||+|+|||||++.+.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 789999999999999999999887
No 360
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.99 E-value=0.0041 Score=52.21 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=20.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhcc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
-.++|+|+.|+|||||++.+.+-.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998643
No 361
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.99 E-value=0.0037 Score=52.63 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.++|+|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999853
No 362
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.98 E-value=0.0032 Score=57.83 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|||||||+|.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 363
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.97 E-value=0.0038 Score=53.28 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
No 364
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.96 E-value=0.0035 Score=59.06 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
+++|+|+.|+|||||+|.|.|--
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 89999999999999999999853
No 365
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.96 E-value=0.0067 Score=51.51 Aligned_cols=23 Identities=43% Similarity=0.654 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998754
No 366
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.93 E-value=0.0078 Score=51.51 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 367
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.92 E-value=0.0037 Score=54.86 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=21.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
-.++|+|+.|||||||++.|.+-..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3689999999999999999987654
No 368
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.92 E-value=0.0041 Score=53.62 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 369
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.91 E-value=0.0041 Score=53.26 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58899999999999999998744
No 370
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.91 E-value=0.0041 Score=53.83 Aligned_cols=22 Identities=45% Similarity=0.727 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 371
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.90 E-value=0.0038 Score=55.35 Aligned_cols=27 Identities=41% Similarity=0.634 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+|-+++|+|+.||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356799999999999999999987654
No 372
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.90 E-value=0.0038 Score=53.44 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 373
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.90 E-value=0.0037 Score=55.12 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++|+|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987553
No 374
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.88 E-value=0.0037 Score=55.04 Aligned_cols=26 Identities=27% Similarity=0.572 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+.+++|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999988653
No 375
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.87 E-value=0.0036 Score=60.89 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|++|+|||||+++|.+..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999999864
No 376
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.87 E-value=0.004 Score=55.27 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl 129 (350)
-.++|+|++|+|||||++.+.+-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 377
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.87 E-value=0.0058 Score=58.86 Aligned_cols=27 Identities=37% Similarity=0.596 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++.++.|+||+|||||||...|+.-+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 456899999999999999999998665
No 378
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.86 E-value=0.004 Score=60.01 Aligned_cols=25 Identities=32% Similarity=0.652 Sum_probs=22.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999998764
No 379
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.85 E-value=0.0042 Score=52.89 Aligned_cols=22 Identities=18% Similarity=0.545 Sum_probs=20.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHh
Q 018829 107 TSLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~g 128 (350)
-.++|+|+.|+|||||++.+.+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999985
No 380
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.85 E-value=0.0039 Score=53.24 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=21.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
-.++|+|+.|+|||||++.+.+-..
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~~ 42 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQS 42 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC-
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3689999999999999999987543
No 381
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.84 E-value=0.0046 Score=52.90 Aligned_cols=23 Identities=39% Similarity=0.484 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
No 382
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.84 E-value=0.004 Score=57.93 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|||||||++.|.|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999864
No 383
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.84 E-value=0.0043 Score=57.43 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.++.|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999863
No 384
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.83 E-value=0.0039 Score=53.60 Aligned_cols=23 Identities=35% Similarity=0.717 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998643
No 385
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.83 E-value=0.0047 Score=53.10 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=21.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHhcc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
-.++|+|+.|+|||||++.+.+-.
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 368999999999999999998743
No 386
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.83 E-value=0.0046 Score=53.37 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
+.-.++|+|+.|+|||||++.+.+-.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 34468999999999999999998754
No 387
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.82 E-value=0.0032 Score=53.83 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=21.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhcc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
-.++|+|+.|+|||||++.+.+-.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998765
No 388
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.82 E-value=0.0047 Score=53.46 Aligned_cols=24 Identities=42% Similarity=0.574 Sum_probs=21.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHhcc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
-.++|+|+.|+|||||++.+.+-.
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999998643
No 389
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.80 E-value=0.0039 Score=52.94 Aligned_cols=23 Identities=17% Similarity=0.489 Sum_probs=20.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl 129 (350)
-.++|+|+.|+|||||++.+.+-
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999863
No 390
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.80 E-value=0.0043 Score=57.38 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|||||||+|.|.|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 391
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.80 E-value=0.0047 Score=56.71 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|||||||++.|.|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999854
No 392
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.80 E-value=0.0038 Score=52.46 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 393
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.78 E-value=0.0045 Score=53.69 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
No 394
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.76 E-value=0.0048 Score=53.72 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998744
No 395
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.73 E-value=0.0055 Score=52.54 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 58999999999999998887643
No 396
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.73 E-value=0.0094 Score=52.20 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|++|+|||||++.+.+-.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999854
No 397
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.73 E-value=0.0058 Score=54.73 Aligned_cols=27 Identities=33% Similarity=0.636 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+..+.|+|+.||||||+.+.|+..+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999987664
No 398
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.72 E-value=0.0041 Score=62.44 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=28.0
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 101 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 101 ~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+.+-+|+.++|+|++|+|||||++.|+.-..
T Consensus 146 ~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 146 APYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 5677899999999999999999999988765
No 399
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.72 E-value=0.0054 Score=53.53 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
No 400
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.71 E-value=0.0055 Score=53.36 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=20.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhcc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
-.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998644
No 401
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.70 E-value=0.0055 Score=52.71 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhc
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.-.++|+|+.|+|||||++.+.+-
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999864
No 402
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.68 E-value=0.0054 Score=56.14 Aligned_cols=27 Identities=30% Similarity=0.573 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++..+.|.||+|+|||||++.|+..+.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 345688999999999999999998765
No 403
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.67 E-value=0.0051 Score=56.43 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++++|++|+|||||++.|.+-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999754
No 404
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.66 E-value=0.0037 Score=52.78 Aligned_cols=22 Identities=45% Similarity=0.694 Sum_probs=9.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998754
No 405
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.66 E-value=0.0053 Score=56.12 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|++|+|||||++.|.|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999854
No 406
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.65 E-value=0.0051 Score=51.67 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+..+.|.||.|+|||||++.++..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999998775
No 407
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.64 E-value=0.0055 Score=60.27 Aligned_cols=28 Identities=21% Similarity=0.385 Sum_probs=23.9
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
-++..++.|+|++||||||+.+.|+.-+
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3567899999999999999999987543
No 408
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.64 E-value=0.0055 Score=53.76 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.++|+|+.|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 409
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.63 E-value=0.0044 Score=58.18 Aligned_cols=25 Identities=20% Similarity=0.476 Sum_probs=22.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..+.|.||+|+|||||++.|+..+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHH
Confidence 4588999999999999999999876
No 410
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.61 E-value=0.0052 Score=56.59 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|..|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999864
No 411
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.61 E-value=0.0058 Score=52.89 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998743
No 412
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.60 E-value=0.0065 Score=52.37 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++|+|++|+|||||++.+.+-+.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 689999999999999999888554
No 413
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.60 E-value=0.0067 Score=54.35 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=25.1
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
-+|-+++|.|+.||||||+++.|...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999998776
No 414
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.59 E-value=0.0061 Score=52.08 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999865
No 415
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.58 E-value=0.009 Score=53.50 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=26.0
Q ss_pred eeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhc
Q 018829 97 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 97 ~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl 129 (350)
+..-+++ .|..++|+||+|||||||...|+.-
T Consensus 26 Ha~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 26 HGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp ESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3355565 5788999999999999999988753
No 416
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.56 E-value=0.0065 Score=56.13 Aligned_cols=25 Identities=24% Similarity=0.547 Sum_probs=22.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..++++|.+|+|||||+|.|.|-..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 5789999999999999999998665
No 417
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.54 E-value=0.0064 Score=58.17 Aligned_cols=25 Identities=24% Similarity=0.634 Sum_probs=22.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..++|+||+|||||||.+.|+.-+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3789999999999999999998664
No 418
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.54 E-value=0.0063 Score=53.54 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++|+|+.|+|||||++.+..-..
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhc
Confidence 588999999999999999887643
No 419
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.53 E-value=0.0056 Score=52.78 Aligned_cols=23 Identities=17% Similarity=0.548 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHh
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~g 128 (350)
.-.++|+|+.|+|||||++.+.+
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999864
No 420
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.52 E-value=0.007 Score=52.49 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+.|.||+|+|||||++.++..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 688999999999999999988765
No 421
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.51 E-value=0.0036 Score=54.72 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.++|+|+.|+|||||++.|.+-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998854
No 422
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.49 E-value=0.0073 Score=55.14 Aligned_cols=27 Identities=19% Similarity=0.466 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+|.+++|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999998776
No 423
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.46 E-value=0.0075 Score=54.21 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
|.+++|.|+.||||||+++.|+..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999998775
No 424
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.46 E-value=0.006 Score=55.34 Aligned_cols=28 Identities=14% Similarity=0.327 Sum_probs=22.7
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+|-++.|.|+.||||||+++.|...+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999998775
No 425
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.45 E-value=0.0076 Score=54.17 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=22.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.-+.|.||+|+|||||++.|+..+.
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578999999999999999998664
No 426
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.45 E-value=0.0085 Score=57.27 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+.+++|+||+|||||||...|+.-+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45789999999999999999987664
No 427
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.42 E-value=0.006 Score=55.69 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=24.7
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..++-+++|.|+.||||||+++.|+..+.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35678999999999999999999988775
No 428
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.36 E-value=0.0081 Score=52.15 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 58999999999999999997643
No 429
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.36 E-value=0.0088 Score=53.61 Aligned_cols=27 Identities=22% Similarity=0.502 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+|.++.+-|+.||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999998876
No 430
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.35 E-value=0.0091 Score=56.19 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=24.7
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHHh
Q 018829 102 DVPKTTSLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 102 ~I~~Ge~iaIvGpnGsGKSTLl~~I~g 128 (350)
-+++|+++.|.||+|||||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999999988875
No 431
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.35 E-value=0.0085 Score=53.28 Aligned_cols=23 Identities=43% Similarity=0.694 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|++|+|||||++.+.|..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
No 432
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.35 E-value=0.0037 Score=53.73 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=4.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998875
No 433
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.31 E-value=0.0067 Score=60.23 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhcc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
-.++|+|++|+|||||+|.|.|-.
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~ 47 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGER 47 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 379999999999999999999854
No 434
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.30 E-value=0.0085 Score=52.13 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHh
Q 018829 107 TSLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~g 128 (350)
-.++|+|+.|+|||||++.+.+
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 4689999999999999988875
No 435
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.30 E-value=0.0093 Score=52.56 Aligned_cols=23 Identities=43% Similarity=0.699 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|+.|+|||||++.+.+-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 436
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.27 E-value=0.0098 Score=53.83 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=25.6
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+|-+++|.|++||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998776
No 437
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.27 E-value=0.009 Score=53.76 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=26.0
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+|.++.+-|+.||||||+++.|...+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3688999999999999999999999887
No 438
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.26 E-value=0.0054 Score=52.19 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=19.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHh
Q 018829 107 TSLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~g 128 (350)
-.++|+|+.|+|||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999999854
No 439
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.23 E-value=0.01 Score=52.25 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl 129 (350)
-.++|+|+.|+|||||++.+.+-
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999998764
No 440
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.19 E-value=0.0029 Score=67.59 Aligned_cols=33 Identities=24% Similarity=0.531 Sum_probs=30.0
Q ss_pred EeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 99 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 99 is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.++.+.++..++|+||+|+|||||+++|++.+.
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 366788999999999999999999999999886
No 441
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.17 E-value=0.011 Score=57.11 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=26.0
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++|.++.|.||+|||||||+..++.-..
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 88999999999999999999988876554
No 442
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.14 E-value=0.014 Score=51.69 Aligned_cols=25 Identities=32% Similarity=0.660 Sum_probs=22.4
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHH
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRIS 127 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~ 127 (350)
+++|+++.|.|++|+|||||+--++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 8999999999999999999976543
No 443
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.14 E-value=0.01 Score=51.50 Aligned_cols=22 Identities=14% Similarity=0.247 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 444
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.05 E-value=0.012 Score=52.95 Aligned_cols=31 Identities=23% Similarity=0.529 Sum_probs=25.8
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 101 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 101 ~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
-.+++..++.|+||.||||+|..+.|+.-|.
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3445667899999999999999999997664
No 445
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.03 E-value=0.012 Score=56.17 Aligned_cols=26 Identities=31% Similarity=0.694 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..+++|+||+|||||||...|+.-+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 34789999999999999999987665
No 446
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.98 E-value=0.012 Score=48.86 Aligned_cols=27 Identities=15% Similarity=0.278 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+.-+.|.||+|+|||++++.|.....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 345688999999999999999998764
No 447
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.90 E-value=0.014 Score=55.21 Aligned_cols=35 Identities=14% Similarity=0.263 Sum_probs=28.7
Q ss_pred CeeEeEEEeCCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 96 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 96 L~~is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
|+.+.--+++|+++.|.|++|+|||||+..++.-.
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44455458999999999999999999988887544
No 448
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.89 E-value=0.014 Score=58.10 Aligned_cols=27 Identities=41% Similarity=0.786 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++.+++++|++||||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999999887
No 449
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.88 E-value=0.012 Score=58.31 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+..+.|.||+|+|||||+++|++.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999998774
No 450
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.88 E-value=0.013 Score=50.19 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.8
Q ss_pred EEEEcCCCChHHHHHHHHHhccC
Q 018829 109 LLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 109 iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+.|.||.|+|||||++.++..+.
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 88999999999999999987653
No 451
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.87 E-value=0.011 Score=51.86 Aligned_cols=24 Identities=42% Similarity=0.854 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHH-HHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNR-ISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~-I~gl~~ 131 (350)
.++|+|+.|+|||||++. +.+-..
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~~~ 41 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGEFE 41 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC
Confidence 478999999999999998 666543
No 452
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.86 E-value=0.014 Score=54.46 Aligned_cols=26 Identities=38% Similarity=0.525 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+-.++|+|.+|+|||||+|.|.|-..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCce
Confidence 34789999999999999999998653
No 453
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.84 E-value=0.013 Score=54.08 Aligned_cols=27 Identities=19% Similarity=0.455 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++..+.|.||+|+|||||++.|+..+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 345689999999999999999988775
No 454
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.81 E-value=0.015 Score=51.77 Aligned_cols=24 Identities=33% Similarity=0.652 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
++.|+||.||||+|..+.|+.-+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999997765
No 455
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.81 E-value=0.023 Score=49.81 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=23.6
Q ss_pred EeEEEeCCcEEEEEcCCCChHHHHHHHHHh
Q 018829 99 SDYDVPKTTSLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 99 is~~I~~Ge~iaIvGpnGsGKSTLl~~I~g 128 (350)
.-+++ .|.-++|.|+||+|||||.-.+..
T Consensus 10 s~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 10 NFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 55554 577899999999999999887764
No 456
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.78 E-value=0.014 Score=54.78 Aligned_cols=24 Identities=33% Similarity=0.642 Sum_probs=21.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+.|.||+|+|||||+++|++.+.
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 388999999999999999999864
No 457
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.75 E-value=0.0071 Score=54.90 Aligned_cols=28 Identities=36% Similarity=0.723 Sum_probs=23.0
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 102 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 102 ~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..+.| +.|.||+|+|||||+++|+....
T Consensus 42 ~~~~~--vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 42 KIPKG--VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCCSC--CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred CCCce--EEEECCCCCcHHHHHHHHHHHhC
Confidence 33445 77999999999999999998664
No 458
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.71 E-value=0.016 Score=55.51 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=22.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
-+++|+|+.|+|||||++.|++.+.
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999998775
No 459
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.68 E-value=0.0079 Score=59.70 Aligned_cols=37 Identities=19% Similarity=0.407 Sum_probs=29.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccCCCCCCCcccEEEECCEe
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 148 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 148 (350)
.+++|+|++|+||||++..|++.+. .....|.+-..|
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~-----~~G~kVllv~~D 136 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQ-----KRGLKPALIAAD 136 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHH-----HHHCCEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEEecc
Confidence 5899999999999999999999887 554456654444
No 460
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.65 E-value=0.013 Score=55.23 Aligned_cols=27 Identities=30% Similarity=0.544 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+..+.|.||+|+|||||++.+...+.
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 345789999999999999999998775
No 461
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.62 E-value=0.017 Score=57.01 Aligned_cols=25 Identities=28% Similarity=0.582 Sum_probs=22.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+++|+||+|||||||.+.|+.-+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 3789999999999999999987665
No 462
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.60 E-value=0.02 Score=49.76 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCChHHHHH-HHHHhcc
Q 018829 105 KTTSLLLIGPKGSGKSSLV-NRISKVF 130 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl-~~I~gl~ 130 (350)
+|.++.|.||.||||||++ +++..+.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999997 5555544
No 463
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.59 E-value=0.0062 Score=52.70 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHh
Q 018829 107 TSLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~g 128 (350)
-.++|+|+.|+|||||++.+.+
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 4689999999999999988864
No 464
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.56 E-value=0.031 Score=49.87 Aligned_cols=21 Identities=33% Similarity=0.651 Sum_probs=18.5
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 018829 108 SLLLIGPKGSGKSSLVNRISK 128 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~g 128 (350)
.++|+|.+|+|||||++.+..
T Consensus 15 KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHHHh
Confidence 588999999999999988763
No 465
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=94.55 E-value=0.016 Score=54.30 Aligned_cols=24 Identities=46% Similarity=0.587 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhc
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl 129 (350)
+-.++|+|+.|+|||||++.+.+-
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999998765
No 466
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.48 E-value=0.017 Score=55.12 Aligned_cols=25 Identities=40% Similarity=0.898 Sum_probs=22.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..+.|.||+|+||||++++|+..+.
T Consensus 52 ~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4588999999999999999998774
No 467
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=94.46 E-value=0.018 Score=55.76 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
++..++++|++|+|||||+|.|.+..
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~~ 186 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEEA 186 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhhc
Confidence 45679999999999999999999873
No 468
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.43 E-value=0.025 Score=53.49 Aligned_cols=27 Identities=19% Similarity=0.490 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+|..+.|.||.|+|||||++.++..+.
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 346789999999999999999999886
No 469
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=94.41 E-value=0.013 Score=55.97 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|..|+|||||++.|.|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
No 470
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.41 E-value=0.019 Score=52.31 Aligned_cols=24 Identities=42% Similarity=0.627 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+.|.||+|+|||||++.|+....
T Consensus 66 ~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Confidence 578999999999999999998654
No 471
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=94.40 E-value=0.0041 Score=53.70 Aligned_cols=22 Identities=50% Similarity=0.712 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl 129 (350)
.++|+|++|+|||||++.|.+-
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~ 56 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADD 56 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999988763
No 472
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=94.39 E-value=0.016 Score=57.04 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|++|+|||||+|.|.|-.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
No 473
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.32 E-value=0.018 Score=51.75 Aligned_cols=29 Identities=28% Similarity=0.494 Sum_probs=25.2
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+++.-.+.|.||.|+||||++.+|+..+.
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45555789999999999999999999876
No 474
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.32 E-value=0.018 Score=52.76 Aligned_cols=25 Identities=36% Similarity=0.818 Sum_probs=22.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..+.|.||+|+|||||++.|+..+.
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578999999999999999998775
No 475
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.31 E-value=0.024 Score=50.27 Aligned_cols=26 Identities=27% Similarity=0.592 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
|.+++|=|+-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999998775
No 476
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=94.23 E-value=0.024 Score=54.43 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=25.4
Q ss_pred EeEEEeCCcEEEEEcCCCChHHHHHHHHHhc
Q 018829 99 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 99 is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl 129 (350)
+.++++---.++|+|.++||||||++.|++-
T Consensus 151 ~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 151 IVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred HhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 5566655556899999999999999998864
No 477
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=94.20 E-value=0.019 Score=55.62 Aligned_cols=26 Identities=31% Similarity=0.567 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
++..++++|.+|+|||||+|.|.+-.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhh
Confidence 46789999999999999999999875
No 478
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.18 E-value=0.027 Score=53.25 Aligned_cols=24 Identities=38% Similarity=0.670 Sum_probs=21.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhcc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.-+.|.||.|+|||||++.++...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 458899999999999999999876
No 479
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.16 E-value=0.023 Score=52.91 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=21.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..+.|.||.|+|||+|+++|+..+.
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3577889999999999999998764
No 480
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=94.16 E-value=0.022 Score=55.75 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
.++|+|.+++|||||+|.|.+--
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999854
No 481
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=94.15 E-value=0.018 Score=57.59 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
+|-.++|+|+.|+|||||+|.|.+-.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 34469999999999999999999853
No 482
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.09 E-value=0.029 Score=52.80 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+..+.|.||+|+|||+|+++|+....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999987653
No 483
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.06 E-value=0.017 Score=61.37 Aligned_cols=29 Identities=21% Similarity=0.402 Sum_probs=24.8
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+..|+.+.|+||+||||||++.++.+...
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~~~~ 134 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVLFDE 134 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 45688999999999999999999876554
No 484
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.02 E-value=0.029 Score=51.07 Aligned_cols=25 Identities=36% Similarity=0.632 Sum_probs=21.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
-.+||+|+.||||||+.+.|+.-+.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999987554
No 485
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.99 E-value=0.021 Score=57.88 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=25.5
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 104 PKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 104 ~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+.|-++.|+|.+||||||+.+.|+..+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 4677899999999999999999999886
No 486
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.99 E-value=0.031 Score=52.54 Aligned_cols=25 Identities=36% Similarity=0.655 Sum_probs=21.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.-+.|.||.|+|||+|++.|+....
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHC
Confidence 3588999999999999999998654
No 487
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.95 E-value=0.027 Score=57.90 Aligned_cols=27 Identities=19% Similarity=0.381 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.|-++.|+|++||||||+.+.|...+.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 456899999999999999999998765
No 488
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=93.93 E-value=0.024 Score=57.89 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhcc
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
-.++|+|..|+|||||+|.|.|--
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 479999999999999999999854
No 489
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.91 E-value=0.032 Score=53.44 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
....+.|.||+|+|||||++.|+....
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 345789999999999999999998664
No 490
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.89 E-value=0.018 Score=47.65 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhc
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl 129 (350)
+.-+.|.||+|+|||++++.|...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 345889999999999999988753
No 491
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.89 E-value=0.031 Score=52.93 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=22.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..+.|.||.|+|||||++.++..+.
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999998764
No 492
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.87 E-value=0.032 Score=54.15 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=24.8
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 103 VPKTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 103 I~~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
+++|.++.|.||.|+|||||+..++.-.
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 7899999999999999999997776544
No 493
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.87 E-value=0.042 Score=49.72 Aligned_cols=26 Identities=27% Similarity=0.592 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+..+.|.||+|+|||+|++.|.....
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 35688999999999999999998765
No 494
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=93.85 E-value=0.033 Score=53.33 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=24.8
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHHhc
Q 018829 102 DVPKTTSLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 102 ~I~~Ge~iaIvGpnGsGKSTLl~~I~gl 129 (350)
-+++|..+.|.||.|+|||||+..++.-
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 5788889999999999999999998753
No 495
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.84 E-value=0.029 Score=52.62 Aligned_cols=24 Identities=42% Similarity=0.659 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+.|.||+|+|||||++.|+....
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECcCCCCHHHHHHHHHHHhC
Confidence 378999999999999999987664
No 496
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.83 E-value=0.034 Score=55.25 Aligned_cols=24 Identities=38% Similarity=0.733 Sum_probs=22.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 018829 108 SLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 108 ~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
.+.|.||+|+|||||+++|+....
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Confidence 488999999999999999998876
No 497
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.79 E-value=0.032 Score=58.00 Aligned_cols=26 Identities=19% Similarity=0.451 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 018829 105 KTTSLLLIGPKGSGKSSLVNRISKVF 130 (350)
Q Consensus 105 ~Ge~iaIvGpnGsGKSTLl~~I~gl~ 130 (350)
+|.++.|+|.+||||||+.+.|...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999876
No 498
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=93.73 E-value=0.037 Score=51.37 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhc
Q 018829 106 TTSLLLIGPKGSGKSSLVNRISKV 129 (350)
Q Consensus 106 Ge~iaIvGpnGsGKSTLl~~I~gl 129 (350)
|..+.|.||.|+|||||++.+..-
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHH
Confidence 578999999999999999998753
No 499
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.72 E-value=0.03 Score=53.65 Aligned_cols=25 Identities=40% Similarity=0.836 Sum_probs=22.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 018829 107 TSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 107 e~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
..+.|.||+|+|||||++.|+..+.
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578999999999999999998774
No 500
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.69 E-value=0.03 Score=55.28 Aligned_cols=33 Identities=9% Similarity=0.016 Sum_probs=28.4
Q ss_pred EeEEEeCCcEEEEEcCCCChHHHHHHHHHhccC
Q 018829 99 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 131 (350)
Q Consensus 99 is~~I~~Ge~iaIvGpnGsGKSTLl~~I~gl~~ 131 (350)
+.--+++|+++.|.|++|+|||||+..++.-..
T Consensus 193 ~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 193 LIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 443489999999999999999999998887664
Done!