BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018833
(350 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AVA|A Chain A, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|1AVA|B Chain B, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|1AMY|A Chain A, Crystal And Molecular Structure Of Barley Alpha-Amylase
pdb|1BG9|A Chain A, Barley Alpha-Amylase With Substrate Analogue Acarbose
Length = 403
Score = 506 bits (1303), Expect = e-144, Method: Compositional matrix adjust.
Identities = 237/351 (67%), Positives = 278/351 (79%), Gaps = 2/351 (0%)
Query: 1 MPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGT 60
MPGRLYDLDASKYG++A LKSLI A KG+K +AD+VINHRTAE KDGRGIYCIFEGGT
Sbjct: 52 MPGRLYDLDASKYGNKAQLKSLIGALHGKGVKAIADIVINHRTAEHKDGRGIYCIFEGGT 111
Query: 61 SDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEI 120
D RLDWGP ICR D+ Y+DG GN DTG DF APDIDHLN RVQKEL +W+NWLK +I
Sbjct: 112 PDARLDWGPHMICRDDRPYADGTGNPDTGADFGAAPDIDHLNLRVQKELVEWLNWLKADI 171
Query: 121 GFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDW 180
GFDGWRFDF KGY+ + K+Y++ + P FAV E W SL+YG DGKP+ NQD HR L +W
Sbjct: 172 GFDGWRFDFAKGYSADVAKIYIDRSEPSFAVAEIWTSLAYGGDGKPNLNQDQHRQELVNW 231
Query: 181 VQAAGGA--VAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTG 238
V GG FDFTTKGIL AV+GELWRL+ ++GK PG IG P AVTF+DNHDTG
Sbjct: 232 VDKVGGKGPATTFDFTTKGILNVAVEGELWRLRGTDGKAPGMIGWWPAKAVTFVDNHDTG 291
Query: 239 STQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASR 298
STQ +WPFPSD+VM GYAYILTHPGTPCIFYDHFFDWGLKE I +L +VR R+GI+ S+
Sbjct: 292 STQHMWPFPSDRVMQGYAYILTHPGTPCIFYDHFFDWGLKEEIDRLVSVRTRHGIHNESK 351
Query: 299 VNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVWEK 349
+ I+ +DAD+Y+A I +VI+K+GP+ D+GNLIP FKVAA G DYAVWEK
Sbjct: 352 LQIIEADADLYLAEIDGKVIVKLGPRYDVGNLIPGGFKVAAHGNDYAVWEK 402
>pdb|2QPU|A Chain A, Sugar Tongs Mutant S378p In Complex With Acarbose
pdb|2QPU|B Chain B, Sugar Tongs Mutant S378p In Complex With Acarbose
pdb|2QPU|C Chain C, Sugar Tongs Mutant S378p In Complex With Acarbose
Length = 405
Score = 479 bits (1233), Expect = e-136, Method: Compositional matrix adjust.
Identities = 223/353 (63%), Positives = 269/353 (76%), Gaps = 3/353 (0%)
Query: 1 MPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGT 60
MPGRLYD+DASKYG+ A+LKSLI A KG++ +AD+VINHR A+ KD RGIYCIFEGGT
Sbjct: 53 MPGRLYDIDASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGT 112
Query: 61 SDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEI 120
SD RLDWGP ICR D +YSDG N DTG DF APDIDHLN RVQ+EL +W+ WLK+++
Sbjct: 113 SDGRLDWGPHMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDL 172
Query: 121 GFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDW 180
GFD WR DF +GY+P + KVY++ TSP AV E WD+++ G DGKP+ +QD HR L +W
Sbjct: 173 GFDAWRLDFARGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNW 232
Query: 181 VQAAGGAVAA---FDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT 237
V GGA +A FDFTTKGIL AAV+GELWRL D GK PG +G P AVTF+DNHDT
Sbjct: 233 VDKVGGAASAGMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPAKAVTFVDNHDT 292
Query: 238 GSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTAS 297
GSTQ +WPFPSDKVM GYAYILTHPG PCIFYDHFF+WG K+ I+ L A+R RNGI S
Sbjct: 293 GSTQAMWPFPSDKVMQGYAYILTHPGIPCIFYDHFFNWGFKDQIAALVAIRKRNGITATS 352
Query: 298 RVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVWEKN 350
+ IL + D Y+A I +V++KIGP+ D+G +IP+ F +A G DYAVWEKN
Sbjct: 353 ALKILMHEGDAYVAEIDGKVVVKIGPRYDVGAVIPAGFVTSAHGNDYAVWEKN 405
>pdb|3BSG|A Chain A, Barley Alpha-Amylase Isozyme 1 (Amy1) H395a Mutant
Length = 414
Score = 477 bits (1227), Expect = e-135, Method: Compositional matrix adjust.
Identities = 222/353 (62%), Positives = 268/353 (75%), Gaps = 3/353 (0%)
Query: 1 MPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGT 60
MPGRLYD+DASKYG+ A+LKSLI A KG++ +AD+VINHR A+ KD RGIYCIFEGGT
Sbjct: 53 MPGRLYDIDASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGT 112
Query: 61 SDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEI 120
SD RLDWGP ICR D +YSDG N DTG DF APDIDHLN RVQ+EL +W+ WLK+++
Sbjct: 113 SDGRLDWGPHMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDL 172
Query: 121 GFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDW 180
GFD WR DF +GY+P + KVY++ TSP AV E WD+++ G DGKP+ +QD HR L +W
Sbjct: 173 GFDAWRLDFARGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNW 232
Query: 181 VQAAGGAVAA---FDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT 237
V GGA +A FDFTTKGIL AAV+GELWRL D GK PG +G P AVTF+DNHDT
Sbjct: 233 VDKVGGAASAGMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPAKAVTFVDNHDT 292
Query: 238 GSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTAS 297
GSTQ +WPFPSDKVM GYAYILTHPG PCIFYDHFF+WG K+ I+ L A+R RNGI S
Sbjct: 293 GSTQAMWPFPSDKVMQGYAYILTHPGIPCIFYDHFFNWGFKDQIAALVAIRKRNGITATS 352
Query: 298 RVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVWEKN 350
+ IL + D Y+A I +V++KIG + D+G +IP+ F +A G DYAVWEKN
Sbjct: 353 ALKILMHEGDAYVAEIDGKVVVKIGSRYDVGAVIPAGFVTSAAGNDYAVWEKN 405
>pdb|2QPS|A Chain A, "sugar Tongs" Mutant Y380a In Complex With Acarbose
Length = 405
Score = 476 bits (1226), Expect = e-135, Method: Compositional matrix adjust.
Identities = 222/353 (62%), Positives = 268/353 (75%), Gaps = 3/353 (0%)
Query: 1 MPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGT 60
MPGRLYD+DASKYG+ A+LKSLI A KG++ +AD+VINHR A+ KD RGIYCIFEGGT
Sbjct: 53 MPGRLYDIDASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGT 112
Query: 61 SDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEI 120
SD RLDWGP ICR D +YSDG N DTG DF APDIDHLN RVQ+EL +W+ WLK+++
Sbjct: 113 SDGRLDWGPHMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDL 172
Query: 121 GFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDW 180
GFD WR DF +GY+P + KVY++ TSP AV E WD+++ G DGKP+ +QD HR L +W
Sbjct: 173 GFDAWRLDFARGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNW 232
Query: 181 VQAAGGAVAA---FDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT 237
V GGA +A FDFTTKGIL AAV+GELWRL D GK PG +G P AVTF+DNHDT
Sbjct: 233 VDKVGGAASAGMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPAKAVTFVDNHDT 292
Query: 238 GSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTAS 297
GSTQ +WPFPSDKVM GYAYILTHPG PCIFYDHFF+WG K+ I+ L A+R RNGI S
Sbjct: 293 GSTQAMWPFPSDKVMQGYAYILTHPGIPCIFYDHFFNWGFKDQIAALVAIRKRNGITATS 352
Query: 298 RVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVWEKN 350
+ IL + D Y+A I +V++KIG + D+G +IP+ F +A G DYAVWEKN
Sbjct: 353 ALKILMHEGDAYVAEIDGKVVVKIGSRADVGAVIPAGFVTSAHGNDYAVWEKN 405
>pdb|1HT6|A Chain A, Crystal Structure At 1.5a Resolution Of The Barley Alpha-
Amylase Isozyme 1
pdb|1P6W|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1 (Amy1)
In Complex With The Substrate Analogue, Methyl
4i,4ii,4iii- Tri-Thiomaltotetraoside (Thio-Dp4)
pdb|1RPK|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1 (Amy1)
In Complex With Acarbose
Length = 405
Score = 476 bits (1225), Expect = e-135, Method: Compositional matrix adjust.
Identities = 222/353 (62%), Positives = 268/353 (75%), Gaps = 3/353 (0%)
Query: 1 MPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGT 60
MPGRLYD+DASKYG+ A+LKSLI A KG++ +AD+VINHR A+ KD RGIYCIFEGGT
Sbjct: 53 MPGRLYDIDASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGT 112
Query: 61 SDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEI 120
SD RLDWGP ICR D +YSDG N DTG DF APDIDHLN RVQ+EL +W+ WLK+++
Sbjct: 113 SDGRLDWGPHMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDL 172
Query: 121 GFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDW 180
GFD WR DF +GY+P + KVY++ TSP AV E WD+++ G DGKP+ +QD HR L +W
Sbjct: 173 GFDAWRLDFARGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNW 232
Query: 181 VQAAGGAVAA---FDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT 237
V GGA +A FDFTTKGIL AAV+GELWRL D GK PG +G P AVTF+DNHDT
Sbjct: 233 VDKVGGAASAGMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPAKAVTFVDNHDT 292
Query: 238 GSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTAS 297
GSTQ +WPFPSDKVM GYAYILTHPG PCIFYDHFF+WG K+ I+ L A+R RNGI S
Sbjct: 293 GSTQAMWPFPSDKVMQGYAYILTHPGIPCIFYDHFFNWGFKDQIAALVAIRKRNGITATS 352
Query: 298 RVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVWEKN 350
+ IL + D Y+A I +V++KIG + D+G +IP+ F +A G DYAVWEKN
Sbjct: 353 ALKILMHEGDAYVAEIDGKVVVKIGSRYDVGAVIPAGFVTSAHGNDYAVWEKN 405
>pdb|3BSH|A Chain A, Barley Alpha-Amylase Isozyme 1 (Amy1) Double Mutant
Y105aY380A IN COMPLEX WITH INHIBITOR ACARBOSE
Length = 414
Score = 474 bits (1221), Expect = e-134, Method: Compositional matrix adjust.
Identities = 221/353 (62%), Positives = 267/353 (75%), Gaps = 3/353 (0%)
Query: 1 MPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGT 60
MPGRLYD+DASKYG+ A+LKSLI A KG++ +AD+VINHR A+ KD RGI CIFEGGT
Sbjct: 53 MPGRLYDIDASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIACIFEGGT 112
Query: 61 SDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEI 120
SD RLDWGP ICR D +YSDG N DTG DF APDIDHLN RVQ+EL +W+ WLK+++
Sbjct: 113 SDGRLDWGPHMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDL 172
Query: 121 GFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDW 180
GFD WR DF +GY+P + KVY++ TSP AV E WD+++ G DGKP+ +QD HR L +W
Sbjct: 173 GFDAWRLDFARGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNW 232
Query: 181 VQAAGGAVAA---FDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT 237
V GGA +A FDFTTKGIL AAV+GELWRL D GK PG +G P AVTF+DNHDT
Sbjct: 233 VDKVGGAASAGMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPAKAVTFVDNHDT 292
Query: 238 GSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTAS 297
GSTQ +WPFPSDKVM GYAYILTHPG PCIFYDHFF+WG K+ I+ L A+R RNGI S
Sbjct: 293 GSTQAMWPFPSDKVMQGYAYILTHPGIPCIFYDHFFNWGFKDQIAALVAIRKRNGITATS 352
Query: 298 RVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVWEKN 350
+ IL + D Y+A I +V++KIG + D+G +IP+ F +A G DYAVWEKN
Sbjct: 353 ALKILMHEGDAYVAEIDGKVVVKIGSRADVGAVIPAGFVTSAHGNDYAVWEKN 405
>pdb|1RP8|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1 (Amy1)
Inactive Mutant D180a In Complex With Maltoheptaose
pdb|1RP9|A Chain A, Crystal Structure Of Barley Alpha-amylase Isozyme 1 (amy1)
Inactive Mutant D180a In Complex With Acarbose
Length = 405
Score = 474 bits (1220), Expect = e-134, Method: Compositional matrix adjust.
Identities = 221/353 (62%), Positives = 267/353 (75%), Gaps = 3/353 (0%)
Query: 1 MPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGT 60
MPGRLYD+DASKYG+ A+LKSLI A KG++ +AD+VINHR A+ KD RGIYCIFEGGT
Sbjct: 53 MPGRLYDIDASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGT 112
Query: 61 SDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEI 120
SD RLDWGP ICR D +YSDG N DTG DF APDIDHLN RVQ+EL +W+ WLK+++
Sbjct: 113 SDGRLDWGPHMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDL 172
Query: 121 GFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDW 180
GFD WR F +GY+P + KVY++ TSP AV E WD+++ G DGKP+ +QD HR L +W
Sbjct: 173 GFDAWRLAFARGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNW 232
Query: 181 VQAAGGAVAA---FDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT 237
V GGA +A FDFTTKGIL AAV+GELWRL D GK PG +G P AVTF+DNHDT
Sbjct: 233 VDKVGGAASAGMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPAKAVTFVDNHDT 292
Query: 238 GSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTAS 297
GSTQ +WPFPSDKVM GYAYILTHPG PCIFYDHFF+WG K+ I+ L A+R RNGI S
Sbjct: 293 GSTQAMWPFPSDKVMQGYAYILTHPGIPCIFYDHFFNWGFKDQIAALVAIRKRNGITATS 352
Query: 298 RVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVWEKN 350
+ IL + D Y+A I +V++KIG + D+G +IP+ F +A G DYAVWEKN
Sbjct: 353 ALKILMHEGDAYVAEIDGKVVVKIGSRYDVGAVIPAGFVTSAHGNDYAVWEKN 405
>pdb|2AMG|A Chain A, Structure Of Hydrolase (Glycosidase)
Length = 418
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 101/331 (30%), Positives = 151/331 (45%), Gaps = 38/331 (11%)
Query: 12 KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWG--P 69
+YGS A L+ A G+K L D+V NH D +G +D D G P
Sbjct: 88 RYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRNDCADPGNYP 147
Query: 70 SFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDF 129
+ GD+ + G + +TG +P+V D L+++ G G+RFDF
Sbjct: 148 NDCDDGDR-FIGGDADLNTG------------HPQVYGMFRDEFTNLRSQYGAGGFRFDF 194
Query: 130 VKGYAPSITKVYMENTSPD-FAVGEKWDSLSYGPDGKPD---ANQDGHRGALKDWVQAAG 185
V+GYAP +M +++ + F VGE W GP P+ N + +KDW A
Sbjct: 195 VRGYAPERVNSWMTDSADNSFCVGELWK----GPSEYPNWDWRNTASWQQIIKDWSDRAK 250
Query: 186 GAVAAFDFTTKGILQAAVQGELWRLKDSNGKP-PGFIGILPQNAVTFIDNHDTGST---- 240
V FDF K +Q + W+ NG P P + + AVTF+DNHDTG +
Sbjct: 251 CPV--FDFALKERMQNGSIAD-WK-HGLNGNPDPRWREV----AVTFVDNHDTGYSPGQN 302
Query: 241 --QRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASR 298
Q W + YAYILT PGTP +++DH +DWG + I +L VR G+ S
Sbjct: 303 GGQHHWALQDGLIRQAYAYILTSPGTPVVYWDHMYDWGYGDFIRQLIQVRRAAGVRADSA 362
Query: 299 VNILASDADVYIAAIGDRVIMKIGPKMDIGN 329
++ + + + G + + + D+GN
Sbjct: 363 ISFHSGYSGLVATVSGSQQTLVVALNSDLGN 393
>pdb|1GCY|A Chain A, High Resolution Crystal Structure Of Maltotetraose-Forming
Exo-Amylase
Length = 527
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 99/330 (30%), Positives = 149/330 (45%), Gaps = 36/330 (10%)
Query: 12 KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSF 71
+YGS A L+ A G+K L D+V NH D +G +D
Sbjct: 88 RYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRND-------- 139
Query: 72 ICRGDKEYSDGQGNDDTGEDFQPA-PDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 130
C Y + + D G+ F D++ +P+V D L+++ G G+RFDFV
Sbjct: 140 -CADPGNYPN---DCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFDFV 195
Query: 131 KGYAPSITKVYMENTSPD-FAVGEKWDSLSYGPDGKPD---ANQDGHRGALKDWVQAAGG 186
+GYAP +M +++ + F VGE W GP P+ N + +KDW A
Sbjct: 196 RGYAPERVNSWMTDSADNSFCVGELWK----GPSEYPNWDWRNTASWQQIIKDWSDRAKC 251
Query: 187 AVAAFDFTTKGILQAAVQGELWRLKDSNGKP-PGFIGILPQNAVTFIDNHDTGST----- 240
V FDF K +Q + W+ NG P P + + AVTF+DNHDTG +
Sbjct: 252 PV--FDFALKERMQNGSIAD-WK-HGLNGNPDPRWREV----AVTFVDNHDTGYSPGQNG 303
Query: 241 -QRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASRV 299
Q W + YAYILT PGTP +++DH +DWG + I +L VR G+ S +
Sbjct: 304 GQHHWALQDGLIRQAYAYILTSPGTPVVYWDHMYDWGYGDFIRQLIQVRRAAGVRADSAI 363
Query: 300 NILASDADVYIAAIGDRVIMKIGPKMDIGN 329
+ + + + G + + + D+GN
Sbjct: 364 SFHSGYSGLVATVSGSQQTLVVALNSDLGN 393
>pdb|1JDA|A Chain A, Maltotetraose-Forming Exo-Amylase
pdb|1JDC|A Chain A, Mutant (E219q) Maltotetraose-Forming Exo-Amylase
Cocrystallized With Maltotetraose (Crystal Type 1)
pdb|1JDD|A Chain A, Mutant (E219q) Maltotetraose-Forming Exo-Amylase
Cocrystallized With Maltotetraose (Crystal Type 2)
Length = 429
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 100/331 (30%), Positives = 151/331 (45%), Gaps = 38/331 (11%)
Query: 12 KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWG--P 69
+YGS A L+ A G+K L D+V NH D +G +D D G P
Sbjct: 88 RYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRNDCADPGNYP 147
Query: 70 SFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDF 129
+ GD+ + G + +TG +P+V D L+++ G G+RFDF
Sbjct: 148 NDCDDGDR-FIGGDADLNTG------------HPQVYGMFRDEFTNLRSQYGAGGFRFDF 194
Query: 130 VKGYAPSITKVYMENTSPD-FAVGEKWDSLSYGPDGKPD---ANQDGHRGALKDWVQAAG 185
V+GYAP +M +++ + F VG+ W GP P+ N + +KDW A
Sbjct: 195 VRGYAPERVNSWMTDSADNSFCVGQLWK----GPSEYPNWDWRNTASWQQIIKDWSDRAK 250
Query: 186 GAVAAFDFTTKGILQAAVQGELWRLKDSNGKP-PGFIGILPQNAVTFIDNHDTGST---- 240
V FDF K +Q + W+ NG P P + + AVTF+DNHDTG +
Sbjct: 251 CPV--FDFALKERMQNGSIAD-WK-HGLNGNPDPRWREV----AVTFVDNHDTGYSPGQN 302
Query: 241 --QRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASR 298
Q W + YAYILT PGTP +++DH +DWG + I +L VR G+ S
Sbjct: 303 GGQHHWALQDGLIRQAYAYILTSPGTPVVYWDHMYDWGYGDFIRQLIQVRRAAGVRADSA 362
Query: 299 VNILASDADVYIAAIGDRVIMKIGPKMDIGN 329
++ + + + G + + + D+GN
Sbjct: 363 ISFHSGYSGLVATVSGSQQTLVVALNSDLGN 393
>pdb|1QI3|A Chain A, Mutant (D193n) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 429
Score = 118 bits (295), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 100/331 (30%), Positives = 151/331 (45%), Gaps = 38/331 (11%)
Query: 12 KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWG--P 69
+YGS A L+ A G+K L D+V NH D +G +D D G P
Sbjct: 88 RYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRNDCADPGNYP 147
Query: 70 SFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDF 129
+ GD+ + G + +TG +P+V D L+++ G G+RF+F
Sbjct: 148 NDCDDGDR-FIGGDADLNTG------------HPQVYGMFRDEFTNLRSQYGAGGFRFNF 194
Query: 130 VKGYAPSITKVYMENTSPD-FAVGEKWDSLSYGPDGKPD---ANQDGHRGALKDWVQAAG 185
V+GYAP +M +++ + F VGE W GP P+ N + +KDW A
Sbjct: 195 VRGYAPERVNSWMTDSADNSFCVGELWK----GPSEYPNWDWRNTASWQQIIKDWSDRAK 250
Query: 186 GAVAAFDFTTKGILQAAVQGELWRLKDSNGKP-PGFIGILPQNAVTFIDNHDTGST---- 240
V FDF K +Q + W+ NG P P + + AVTF+DNHDTG +
Sbjct: 251 CPV--FDFALKERMQNGSIAD-WK-HGLNGNPDPRWREV----AVTFVDNHDTGYSPGQN 302
Query: 241 --QRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASR 298
Q W + YAYILT PGTP +++DH +DWG + I +L VR G+ S
Sbjct: 303 GGQHHWALQDGLIRQAYAYILTSPGTPVVYWDHMYDWGYGDFIRQLIQVRRAAGVRADSA 362
Query: 299 VNILASDADVYIAAIGDRVIMKIGPKMDIGN 329
++ + + + G + + + D+GN
Sbjct: 363 ISFHSGYSGLVATVSGSQQTLVVALNSDLGN 393
>pdb|1QI5|A Chain A, Mutant (D294n) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 429
Score = 118 bits (295), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 100/331 (30%), Positives = 151/331 (45%), Gaps = 38/331 (11%)
Query: 12 KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWG--P 69
+YGS A L+ A G+K L D+V NH D +G +D D G P
Sbjct: 88 RYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRNDCADPGNYP 147
Query: 70 SFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDF 129
+ GD+ + G + +TG +P+V D L+++ G G+RFDF
Sbjct: 148 NDCDDGDR-FIGGDADLNTG------------HPQVYGMFRDEFTNLRSQYGAGGFRFDF 194
Query: 130 VKGYAPSITKVYMENTSPD-FAVGEKWDSLSYGPDGKPD---ANQDGHRGALKDWVQAAG 185
V+GYAP +M +++ + F VGE W GP P+ N + +KDW A
Sbjct: 195 VRGYAPERVNSWMTDSADNSFCVGELWK----GPSEYPNWDWRNTASWQQIIKDWSDRAK 250
Query: 186 GAVAAFDFTTKGILQAAVQGELWRLKDSNGKP-PGFIGILPQNAVTFIDNHDTGST---- 240
V FDF K +Q + W+ NG P P + + AVTF+DNH+TG +
Sbjct: 251 CPV--FDFALKERMQNGSIAD-WK-HGLNGNPDPRWREV----AVTFVDNHNTGYSPGQN 302
Query: 241 --QRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASR 298
Q W + YAYILT PGTP +++DH +DWG + I +L VR G+ S
Sbjct: 303 GGQHHWALQDGLIRQAYAYILTSPGTPVVYWDHMYDWGYGDFIRQLIQVRRAAGVRADSA 362
Query: 299 VNILASDADVYIAAIGDRVIMKIGPKMDIGN 329
++ + + + G + + + D+GN
Sbjct: 363 ISFHSGYSGLVATVSGSQQTLVVALNSDLGN 393
>pdb|1QPK|A Chain A, Mutant (D193g) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 418
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/330 (29%), Positives = 148/330 (44%), Gaps = 36/330 (10%)
Query: 12 KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSF 71
+YGS A L+ A G+K L D+V NH D +G +D
Sbjct: 88 RYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRND-------- 139
Query: 72 ICRGDKEYSDGQGNDDTGEDFQPA-PDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 130
C Y + + D G+ F D++ +P+V D L+++ G G+RF FV
Sbjct: 140 -CADPGNYPN---DCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFGFV 195
Query: 131 KGYAPSITKVYMENTSPD-FAVGEKWDSLSYGPDGKPD---ANQDGHRGALKDWVQAAGG 186
+GYAP +M +++ + F VGE W GP P+ N + +KDW A
Sbjct: 196 RGYAPERVNSWMTDSADNSFCVGELWK----GPSEYPNWDWRNTASWQQIIKDWSDRAKC 251
Query: 187 AVAAFDFTTKGILQAAVQGELWRLKDSNGKP-PGFIGILPQNAVTFIDNHDTGST----- 240
V FDF K +Q + W+ NG P P + + AVTF+DNHDTG +
Sbjct: 252 PV--FDFALKERMQNGSIAD-WK-HGLNGNPDPRWREV----AVTFVDNHDTGYSPGQNG 303
Query: 241 -QRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASRV 299
Q W + YAYILT PGTP +++DH +DWG + I +L VR G+ S +
Sbjct: 304 GQHHWALQDGLIRQAYAYILTSPGTPVVYWDHMYDWGYGDFIRQLIQVRRAAGVRADSAI 363
Query: 300 NILASDADVYIAAIGDRVIMKIGPKMDIGN 329
+ + + + G + + + D+GN
Sbjct: 364 SFHSGYSGLVATVSGSQQTLVVALNSDLGN 393
>pdb|1QI4|A Chain A, Mutant (e219g) Maltotetraose-forming Exo-amylase In
Complex With Maltotetraose
Length = 429
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/331 (30%), Positives = 150/331 (45%), Gaps = 38/331 (11%)
Query: 12 KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWG--P 69
+YGS A L+ A G+K L D+V NH D +G +D D G P
Sbjct: 88 RYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRNDCADPGNYP 147
Query: 70 SFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDF 129
+ GD+ + G + +TG +P+V D L+++ G G+RFDF
Sbjct: 148 NDCDDGDR-FIGGDADLNTG------------HPQVYGMFRDEFTNLRSQYGAGGFRFDF 194
Query: 130 VKGYAPSITKVYMENTSPD-FAVGEKWDSLSYGPDGKPD---ANQDGHRGALKDWVQAAG 185
V+GYAP +M +++ + F VG W GP P+ N + +KDW A
Sbjct: 195 VRGYAPERVNSWMTDSADNSFCVGGLWK----GPSEYPNWDWRNTASWQQIIKDWSDRAK 250
Query: 186 GAVAAFDFTTKGILQAAVQGELWRLKDSNGKP-PGFIGILPQNAVTFIDNHDTGST---- 240
V FDF K +Q + W+ NG P P + + AVTF+DNHDTG +
Sbjct: 251 CPV--FDFALKERMQNGSIAD-WK-HGLNGNPDPRWREV----AVTFVDNHDTGYSPGQN 302
Query: 241 --QRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASR 298
Q W + YAYILT PGTP +++DH +DWG + I +L VR G+ S
Sbjct: 303 GGQHHWALQDGLIRQAYAYILTSPGTPVVYWDHMYDWGYGDFIRQLIQVRRAAGVRADSA 362
Query: 299 VNILASDADVYIAAIGDRVIMKIGPKMDIGN 329
++ + + + G + + + D+GN
Sbjct: 363 ISFHSGYSGLVATVSGSQQTLVVALNSDLGN 393
>pdb|1MWO|A Chain A, Crystal Structure Analysis Of The Hyperthermostable
Pyrocoocus Woesei Alpha-Amylase
pdb|1MXD|A Chain A, Structure Of A (Ca,Zn)-Dependent Alpha-Amylase From The
Hyperthermophilic Archaeon Pyrococcus Woesei
pdb|1MXG|A Chain A, Crystal Strucutre Of A (Ca,Zn)-Dependent Alpha-Amylase
From The Hyperthermophilic Archaeon Pyrococcus Woesei In
Complex With Acarbose
Length = 435
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 91/307 (29%), Positives = 125/307 (40%), Gaps = 79/307 (25%)
Query: 11 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA---ERKDGRGIYC------IFEGGTS 61
+++GS+ +L LIQ GIK +AD+VINHR E G Y + G +
Sbjct: 81 TRFGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNPFVGDYTWTDFSKVASGKYT 140
Query: 62 DDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTE-- 119
+ LD+ P+ + D+ F PDI H KE + W E
Sbjct: 141 ANYLDFHPNELHCCDEG------------TFGGFPDICH-----HKEWDQYWLWKSNESY 183
Query: 120 ------IGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGH 173
IGFDGWRFD+VKGY + + ++ N +AVGE WD+ N D
Sbjct: 184 AAYLRSIGFDGWRFDYVKGYGAWVVRDWL-NWWGGWAVGEYWDT-----------NVD-- 229
Query: 174 RGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGIL--------- 224
AL W +G V FDF + A N P + L
Sbjct: 230 --ALLSWAYESGAKV--FDFPLYYKMDEAFD---------NNNIPALVYALQNGQTVVSR 276
Query: 225 -PQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISK 283
P AVTF+ NHDT +P YA+ILT+ G P IFY F +W K+ +
Sbjct: 277 DPFKAVTFVANHDTDIIWNKYP--------AYAFILTYEGQPVIFYRDFEEWLNKDKLIN 328
Query: 284 LAAVRNR 290
L + +
Sbjct: 329 LIWIHDH 335
>pdb|3QGV|A Chain A, Crystal Structure Of A Thermostable Amylase Variant
Length = 435
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 86/301 (28%), Positives = 127/301 (42%), Gaps = 71/301 (23%)
Query: 11 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA---ERKDGRGIYC------IFEGGTS 61
+++GS+ +L ++I G+K +AD+VINHR E Y + G +
Sbjct: 81 TRFGSKQELVNMINTAHAYGMKVIADIVINHRAGGDLEWNPFVNDYTWTDFSKVASGKYT 140
Query: 62 DDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKEL----SDWMNWLK 117
+ LD+ P+ + GD F PDI H Q L + +L+
Sbjct: 141 ANYLDFHPNELHAGDSG------------TFGGYPDICHDKSWDQYWLWASQESYAAYLR 188
Query: 118 TEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGAL 177
+ IG D WRFD+VKGYAP + K ++ N +AVGE WD+ N D A+
Sbjct: 189 S-IGIDAWRFDYVKGYAPWVVKDWL-NWWGGWAVGEYWDT-----------NVD----AV 231
Query: 178 KDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGIL----------PQN 227
+W ++G V FDF + A N P + L P
Sbjct: 232 LNWAYSSGAKV--FDFALYYKMDEAFD---------NKNIPALVSALQNGQTVVSRDPFK 280
Query: 228 AVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAV 287
AVTF+ NHDT +P YA+ILT+ G P IFY + +W K+ + L +
Sbjct: 281 AVTFVANHDTDIIWNKYP--------AYAFILTYEGQPTIFYRDYEEWLNKDKLKNLIWI 332
Query: 288 R 288
Sbjct: 333 H 333
>pdb|3BC9|A Chain A, Alpha-Amylase B In Complex With Acarbose
pdb|3BCD|A Chain A, Alpha-Amylase B In Complex With Maltotetraose And
Alpha-Cyclodextrin
pdb|3BCF|A Chain A, Alpha-Amylase B From Halothermothrix Orenii
Length = 599
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 91/340 (26%), Positives = 134/340 (39%), Gaps = 63/340 (18%)
Query: 11 SKYGSQADLKSLIQAFRQKGIKCLADMVINHR-------------TAERKDGR------- 50
+KYG++ +L++ I A IK D V+NHR + K G+
Sbjct: 203 TKYGTKGELENAIDALHNNDIKVYFDAVLNHRMGADYAETVLLDENSRDKPGQYIKAWTG 262
Query: 51 -------GIYCIFE-GGTSDDRLDWGPSFICRGDKEYSDGQGNDDT---GEDFQPAPDID 99
G Y F G D DW + K D + D T ED+ D+D
Sbjct: 263 FNFPGRNGEYSNFTWNGQCFDGTDW-DDYSKESGKYLFDEKSWDWTYNWDEDYLMGADVD 321
Query: 100 HLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYM---ENTSPD--FAVGEK 154
+ N VQ ++ DW W+ I FDG+R D VK +M +N+S F VGE
Sbjct: 322 YENEAVQNDVIDWGQWIINNIDFDGFRLDAVKHIDYRFIDKWMSAVQNSSNRDVFFVGEA 381
Query: 155 WDSLSYGPDGKPDANQDGHRGALKDWVQAAGGA-VAAFDFTTKGILQAAVQGELWRLKDS 213
W D + LK ++ G + FDF + + G +
Sbjct: 382 W---------VEDVDD------LKGFLDTVGNPDLRVFDFPLRSFFVDMLNGAYMADLRN 426
Query: 214 NG--KPPGFIGILPQNAVTFIDNHDTGSTQRLWPFP-SDKVMLGYAYILTH-PGTPCIFY 269
G PG+ AVTF+DNHDT + + + YAYILT G P +++
Sbjct: 427 AGLVNSPGY----ENRAVTFVDNHDTDRDEGSYTVSIYSRKYQAYAYILTRAEGVPTVYW 482
Query: 270 DHFFDWGLKEAISKLAAVRNRNGINTASRVNILASDADVY 309
++ W +KE + KL R V+ +DAD+Y
Sbjct: 483 KDYYIWEMKEGLDKLLTARRYYAYGPGYEVD--NNDADIY 520
>pdb|1UD2|A Chain A, Crystal Structure Of Calcium-Free Alpha-Amylase From
Bacillus Sp. Strain Ksm-K38 (Amyk38)
pdb|1UD4|A Chain A, Crystal Structure Of Calcium Free Alpha Amylase From
Bacillus Sp. Strain Ksm-K38 (Amyk38, In Calcium
Containing Solution)
pdb|1UD5|A Chain A, Crystal Structure Of Amyk38 With Rubidium Ion
pdb|1UD6|A Chain A, Crystal Structure Of Amyk38 With Potassium Ion
pdb|1UD8|A Chain A, Crystal Structure Of Amyk38 With Lithium Ion
Length = 480
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 124/310 (40%), Gaps = 64/310 (20%)
Query: 11 SKYGSQADLKSLIQAFRQKGIKCLADMVINHR----------------TAERKDGRGIYC 54
+KYG++A L+ I + + I D+V+NH+ T +D G Y
Sbjct: 75 TKYGTKAQLERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTNRWQDISGAYT 134
Query: 55 I-------FEG---GTSDDRLDWGPSFICRGDKEYSDGQ-------------GNDDTGED 91
I F G SD + W D+ Y + ++ D
Sbjct: 135 IDAWTGFDFSGRNNAYSDFKWRWFHFNGVDWDQRYQENHIFRFANTNWNWRVDEENGNYD 194
Query: 92 FQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPD--- 148
+ +ID +P VQ EL DW +W E+ DG+R D +K T ++ + +
Sbjct: 195 YLLGSNIDFSHPEVQDELKDWGSWFTDELDLDGYRLDAIKHIPFWYTSDWVRHQRNEADQ 254
Query: 149 --FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDF-TTKGILQAAVQG 205
F VGE W K D GAL+ ++ ++ FD +A+ QG
Sbjct: 255 DLFVVGEYW---------KDDV------GALEFYLDEMNWEMSLFDVPLNYNFYRASQQG 299
Query: 206 ELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVM-LGYAYILTHP-G 263
+ ++ N + P +AVTF+DNHDT + L + +D L YA ILT G
Sbjct: 300 GSYDMR--NILRGSLVEAHPMHAVTFVDNHDTQPGESLESWVADWFKPLAYATILTREGG 357
Query: 264 TPCIFYDHFF 273
P +FY ++
Sbjct: 358 YPNVFYGDYY 367
>pdb|1UD3|A Chain A, Crystal Structure Of Amyk38 N289h Mutant
Length = 480
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 124/310 (40%), Gaps = 64/310 (20%)
Query: 11 SKYGSQADLKSLIQAFRQKGIKCLADMVINHR----------------TAERKDGRGIYC 54
+KYG++A L+ I + + I D+V+NH+ T +D G Y
Sbjct: 75 TKYGTKAQLERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTNRWQDISGAYT 134
Query: 55 I-------FEG---GTSDDRLDWGPSFICRGDKEYSDGQ-------------GNDDTGED 91
I F G SD + W D+ Y + ++ D
Sbjct: 135 IDAWTGFDFSGRNNAYSDFKWRWFHFNGVDWDQRYQENHIFRFANTNWNWRVDEENGNYD 194
Query: 92 FQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPD--- 148
+ +ID +P VQ EL DW +W E+ DG+R D +K T ++ + +
Sbjct: 195 YLLGSNIDFSHPEVQDELKDWGSWFTDELDLDGYRLDAIKHIPFWYTSDWVRHQRNEADQ 254
Query: 149 --FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTK-GILQAAVQG 205
F VGE W K D GAL+ ++ ++ FD +A+ QG
Sbjct: 255 DLFVVGEYW---------KDDV------GALEFYLDEMNWEMSLFDVPLHYNFYRASQQG 299
Query: 206 ELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVM-LGYAYILTHP-G 263
+ ++ N + P +AVTF+DNHDT + L + +D L YA ILT G
Sbjct: 300 GSYDMR--NILRGSLVEAHPMHAVTFVDNHDTQPGESLESWVADWFKPLAYATILTREGG 357
Query: 264 TPCIFYDHFF 273
P +FY ++
Sbjct: 358 YPNVFYGDYY 367
>pdb|2GJP|A Chain A, Structure Of Bacillus Halmapalus Alpha-Amylase,
Crystallized With The Substrate Analogue Acarbose And
Maltose
pdb|2GJR|A Chain A, Structure Of Bacillus Halmapalus Alpha-Amylase Without Any
Substrate Analogues
Length = 485
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 125/314 (39%), Gaps = 69/314 (21%)
Query: 11 SKYGSQADLKSLIQAFRQKGIKCLADMVINHR----------------TAERKDGRGIYC 54
+KYG+++ L+S I A + G++ D+V+NH+ ++ G Y
Sbjct: 77 TKYGTRSQLESAIHALKNNGVQVYGDVVMNHKGGADATENVLAVEVNPNNRNQEISGDYT 136
Query: 55 I-------FEGGTSD-----------DRLDWGPS-------FICRGDKEYSDGQGNDDTG 89
I F G + D +DW S + RGD + D + + + G
Sbjct: 137 IEAWTKFDFPGRGNTYSDFKWRWYHFDGVDWDQSRQFQNRIYKFRGDGKAWDWEVDSENG 196
Query: 90 E-DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENT--- 145
D+ D+D +P V EL W W + DG+R D VK S T+ ++ +
Sbjct: 197 NYDYLMYADVDMDHPEVVNELRRWGEWYTNTLNLDGFRIDAVKHIKYSFTRDWLTHVRNA 256
Query: 146 --SPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV 203
FAV E W K D GAL++++ + FD L A
Sbjct: 257 TGKEMFAVAEFW---------KNDL------GALENYLNKTNWNHSVFDVPLHYNLYNAS 301
Query: 204 Q--GELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVM-LGYAYILT 260
G K NG + P +AVTF+DNHD+ + L F + L YA ILT
Sbjct: 302 NSGGNYDMAKLLNGT---VVQKHPMHAVTFVDNHDSQPGESLESFVQEWFKPLAYALILT 358
Query: 261 HP-GTPCIFYDHFF 273
G P +FY ++
Sbjct: 359 REQGYPSVFYGDYY 372
>pdb|1W9X|A Chain A, Bacillus Halmapalus Alpha Amylase
Length = 481
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 125/314 (39%), Gaps = 69/314 (21%)
Query: 11 SKYGSQADLKSLIQAFRQKGIKCLADMVINHR----------------TAERKDGRGIYC 54
+KYG+++ L+S I A + G++ D+V+NH+ ++ G Y
Sbjct: 73 TKYGTRSQLESAIHALKNNGVQVYGDVVMNHKGGADATENVLAVEVNPNNRNQEISGDYT 132
Query: 55 I-------FEGGTSD-----------DRLDWGPS-------FICRGDKEYSDGQGNDDTG 89
I F G + D +DW S + RGD + D + + + G
Sbjct: 133 IEAWTKFDFPGRGNTYSDFKWRWYHFDGVDWDQSRQFQNRIYKFRGDGKAWDWEVDSENG 192
Query: 90 E-DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENT--- 145
D+ D+D +P V EL W W + DG+R D VK S T+ ++ +
Sbjct: 193 NYDYLMYADVDMDHPEVVNELRRWGEWYTNTLNLDGFRIDAVKHIKYSFTRDWLTHVRNA 252
Query: 146 --SPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV 203
FAV E W K D GAL++++ + FD L A
Sbjct: 253 TGKEMFAVAEFW---------KNDL------GALENYLNKTNWNHSVFDVPLHYNLYNAS 297
Query: 204 Q--GELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVM-LGYAYILT 260
G K NG + P +AVTF+DNHD+ + L F + L YA ILT
Sbjct: 298 NSGGNYDMAKLLNGT---VVQKHPMHAVTFVDNHDSQPGESLESFVQEWFKPLAYALILT 354
Query: 261 HP-GTPCIFYDHFF 273
G P +FY ++
Sbjct: 355 REQGYPSVFYGDYY 368
>pdb|1WP6|A Chain A, Crystal Structure Of Maltohexaose-producing Amylase From
Alkalophilic Bacillus Sp.707.
pdb|1WPC|A Chain A, Crystal Structure Of Maltohexaose-Producing Amylase
Complexed With Pseudo-Maltononaose
pdb|2D3L|A Chain A, Crystal Structure Of Maltohexaose-Producing Amylase From
Bacillus Sp.707 Complexed With Maltopentaose.
pdb|2D3N|A Chain A, Crystal Structure Of Maltohexaose-Producing Amylase From
Bacillus Sp.707 Complexed With Maltohexaose
Length = 485
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 82/328 (25%), Positives = 133/328 (40%), Gaps = 77/328 (23%)
Query: 5 LYDLDA--------SKYGSQADLKSLIQAFRQKGIKCLADMVINHR-------------- 42
LYDL +KYG+++ L++ + + + GI+ D+V+NH+
Sbjct: 63 LYDLGEFNQKGTVRTKYGTRSQLQAAVTSLKNNGIQVYGDVVMNHKGGADATEMVRAVEV 122
Query: 43 --TAERKDGRGIYCIF---------EGGTSD---------DRLDWGPS-------FICRG 75
++ G Y I G T D +DW S + RG
Sbjct: 123 NPNNRNQEVTGEYTIEAWTRFDFPGRGNTHSSFKWRWYHFDGVDWDQSRRLNNRIYKFRG 182
Query: 76 DKEYSDGQGNDDTGE-DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA 134
+ D + + + G D+ DID +P V EL +W W +G DG+R D VK
Sbjct: 183 HGKAWDWEVDTENGNYDYLMYADIDMDHPEVVNELRNWGVWYTNTLGLDGFRIDAVKHIK 242
Query: 135 PSITKVYMENTSPD-----FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVA 189
S T+ ++ + FAV E W K D GA+++++Q +
Sbjct: 243 YSFTRDWINHVRSATGKNMFAVAEFW---------KNDL------GAIENYLQKTNWNHS 287
Query: 190 AFDFTTK-GILQAAVQGELWRLKD-SNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFP 247
FD + A+ G + +++ NG + P +AVTF+DNHD+ + L F
Sbjct: 288 VFDVPLHYNLYNASKSGGNYDMRNIFNGT---VVQRHPSHAVTFVDNHDSQPEEALESFV 344
Query: 248 SDKVM-LGYAYILTHP-GTPCIFYDHFF 273
+ L YA LT G P +FY ++
Sbjct: 345 EEWFKPLAYALTLTREQGYPSVFYGDYY 372
>pdb|1HVX|A Chain A, Bacillus Stearothermophilus Alpha-Amylase
Length = 515
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 85/319 (26%), Positives = 125/319 (39%), Gaps = 80/319 (25%)
Query: 11 SKYGSQADLKSLIQAFRQKGIKCLADMVINHR----------------TAERKDGRGIYC 54
+KYG++A IQA G++ AD+V +H+ + ++ G Y
Sbjct: 76 TKYGTKAQYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVNPSDRNQEISGTYQ 135
Query: 55 I-------FEGGTSD-----------DRLDWGPS------FICRGDKEYSDGQGNDDTGE 90
I F G + D +DW S + RG + D + + + G
Sbjct: 136 IQAWTKFDFPGRGNTYSSFKWRWYHFDGVDWDESRKLSRIYKFRGIGKAWDWEVDTENGN 195
Query: 91 -DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPS-----ITKVYMEN 144
D+ D+D +P V EL W W DG+R D VK S ++ V +
Sbjct: 196 YDYLMYADLDMDHPEVVTELKSWGKWYVNTTNIDGFRLDAVKHIKFSFFPDWLSYVRSQT 255
Query: 145 TSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQ 204
P F VGE W SY D N+ L +++ G ++ FD A +
Sbjct: 256 GKPLFTVGEYW---SY------DINK------LHNYIMKTNGTMSLFD--------APLH 292
Query: 205 GELWRLKDSNGK-------PPGFIGILPQNAVTFIDNHDTGSTQRL--WPFPSDKVMLGY 255
+ + S G + P AVTF+DNHDT Q L W P K L Y
Sbjct: 293 NKFYTASKSGGTFDMRTLMTNTLMKDQPTLAVTFVDNHDTEPGQALQSWVDPWFKP-LAY 351
Query: 256 AYILT-HPGTPCIFYDHFF 273
A+ILT G PC+FY ++
Sbjct: 352 AFILTRQEGYPCVFYGDYY 370
>pdb|2DIE|A Chain A, Alkaline Alpha-Amylase Amyk From Bacillus Sp. Ksm-1378
Length = 485
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 128/314 (40%), Gaps = 69/314 (21%)
Query: 11 SKYGSQADLKSLIQAFRQKGIKCLADMVINH----------------RTAERKDGRGIYC 54
+KYG+++ L+ + + + GI+ D+V+NH R+ ++ G Y
Sbjct: 77 TKYGTRSQLQGAVTSLKNNGIQVYGDVVMNHKGGADGTEMVNAVEVNRSNRNQEISGEYT 136
Query: 55 IF---------EGGTSD---------DRLDWGPS-------FICRGDKEYSDGQGNDDTG 89
I G T D DW S + RG + D + + + G
Sbjct: 137 IEAWTKFDFPGRGNTHSNFKWRWYHFDGTDWDQSRQLQNKIYKFRGTGKAWDWEVDIENG 196
Query: 90 E-DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITK---VYMENT 145
D+ DID +P V EL +W W + DG+R D VK S T+ ++ NT
Sbjct: 197 NYDYLMYADIDMDHPEVINELRNWGVWYTNTLNLDGFRIDAVKHIKYSYTRDWLTHVRNT 256
Query: 146 S--PDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTK-GILQAA 202
+ P FAV E W K D A+++++ + FD + A+
Sbjct: 257 TGKPMFAVAEFW---------KNDL------AAIENYLNKTSWNHSVFDVPLHYNLYNAS 301
Query: 203 VQGELWRLKD-SNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVM-LGYAYILT 260
G + +++ NG + P +AVTF+DNHD+ + L F L YA ILT
Sbjct: 302 NSGGYFDMRNILNGS---VVQKHPIHAVTFVDNHDSQPGEALESFVQSWFKPLAYALILT 358
Query: 261 HP-GTPCIFYDHFF 273
G P +FY ++
Sbjct: 359 REQGYPSVFYGDYY 372
>pdb|3BH4|A Chain A, High Resolution Crystal Structure Of Bacillus
Amyloliquefaciens Alpha-Amylase
pdb|3BH4|B Chain B, High Resolution Crystal Structure Of Bacillus
Amyloliquefaciens Alpha-Amylase
Length = 483
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 83/333 (24%), Positives = 131/333 (39%), Gaps = 90/333 (27%)
Query: 2 PGRLYDLDA--------SKYGSQADLKSLIQAFRQKGIKCLADMVINHR----------- 42
P LYDL +KYG++++L+ I + + ++ D+V+NH+
Sbjct: 56 PYDLYDLGEFQQKGTVRTKYGTKSELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTA 115
Query: 43 -----------TAE----------RKDGRG--------IYCIFEGGTSDDRLDWGPSFIC 73
T+E R GRG + F+G D+ F
Sbjct: 116 VEVNPANRNQETSEEYQIKAWTDFRFPGRGNTYSDFKWHWYHFDGADWDESRKISRIFKF 175
Query: 74 RGDKEYSDGQGNDDTGE-DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG 132
RG+ + D + + + G D+ D+D+ +P V E W W E+ DG+R D K
Sbjct: 176 RGEGKAWDWEVSSENGNYDYLMYADVDYDHPDVVAETKKWGIWYANELSLDGFRIDAAKH 235
Query: 133 YAPSITKVYMENTSPD-----FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGA 187
S + +++ F V E W + + G L++++
Sbjct: 236 IKFSFLRDWVQAVRQATGKEMFTVAEYWQN---------------NAGKLENYLNKTSFN 280
Query: 188 VAAFDFTTKGILQAA-VQG---ELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTG----- 238
+ FD LQAA QG ++ RL D + P+ AVTF++NHDT
Sbjct: 281 QSVFDVPLHFNLQAASSQGGGYDMRRLLDGT-----VVSRHPEKAVTFVENHDTQPGQSL 335
Query: 239 -STQRLWPFPSDKVMLGYAYILT-HPGTPCIFY 269
ST + W P L YA+ILT G P +FY
Sbjct: 336 ESTVQTWFKP-----LAYAFILTRESGYPQVFY 363
>pdb|1VJS|A Chain A, Structure Of Alpha-Amylase Precursor
Length = 483
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 124/318 (38%), Gaps = 88/318 (27%)
Query: 11 SKYGSQADLKSLIQAFRQKGIKCLADMVINHR---------TAERKD------------- 48
+KYG++ +L+S I++ + I D+VINH+ TA D
Sbjct: 75 TKYGTKGELQSAIKSLHSRDINVYGDVVINHKGGADATEDVTAVEVDPADRNRVISGEHL 134
Query: 49 ----------GRGI--------YCIFEGGTSDDRLDWGPSFICRG---DKEYSDGQGNDD 87
GRG + F+G D+ + +G D E S+ GN
Sbjct: 135 IKAWTHFHFPGRGSTYSDFKWHWYHFDGTDWDESRKLNRIYKFQGKAWDWEVSNENGN-- 192
Query: 88 TGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSP 147
D+ DID+ +P V E+ W W E+ DG+R D VK S + ++ +
Sbjct: 193 --YDYLMYADIDYDHPDVAAEIKRWGTWYANELQLDGFRLDAVKHIKFSFLRDWVNHVRE 250
Query: 148 D-----FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAA 202
F V E W + GAL++++ + FD AA
Sbjct: 251 KTGKEMFTVAEYWQN---------------DLGALENYLNKTNFNHSVFDVPLHYQFHAA 295
Query: 203 -VQG---ELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTG------STQRLWPFPSDKVM 252
QG ++ +L +S + P AVTF+DNHDT ST + W P
Sbjct: 296 STQGGGYDMRKLLNST-----VVSKHPLKAVTFVDNHDTQPGQSLESTVQTWFKP----- 345
Query: 253 LGYAYILT-HPGTPCIFY 269
L YA+ILT G P +FY
Sbjct: 346 LAYAFILTRESGYPQVFY 363
>pdb|1E3X|A Chain A, Native Structure Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.92a
pdb|1E3Z|A Chain A, Acarbose Complex Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.93a
pdb|1E40|A Chain A, TrisMALTOTRIOSE COMPLEX OF CHIMAERIC AMYLASE FROM B.
Amyloliquefaciens And B. Licheniformis At 2.2a
pdb|1E43|A Chain A, Native Structure Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.7a
Length = 483
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 130/331 (39%), Gaps = 86/331 (25%)
Query: 2 PGRLYDLDA--------SKYGSQADLKSLIQAFRQKGIKCLADMVINHR----------- 42
P LYDL +KYG++++L+ I + + ++ D+V+NH+
Sbjct: 56 PYDLYDLGEFQQKGTVRTKYGTKSELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTA 115
Query: 43 -----------TAE----------RKDGRG--------IYCIFEGGTSDDRLDWGPSFIC 73
T+E R GRG + F+G D+ F
Sbjct: 116 VEVNPANRNQETSEEYQIKAWTDFRFPGRGNTYSDFKWHWYHFDGADWDESRKISRIFKF 175
Query: 74 RGDKEYSDGQGNDDTGE-DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG 132
RG+ + D + + + G D+ D+D+ +P V E W W E+ DG+R D K
Sbjct: 176 RGEGKAWDWEVSSENGNYDYLMYADVDYDHPDVVAETKKWGIWYANELSLDGFRIDAAKH 235
Query: 133 YAPSITKVYMENTSPD-----FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGA 187
S + +++ F V E W + + G L++++
Sbjct: 236 IKFSFLRDWVQAVRQATGKEMFTVAEYWQN---------------NAGKLENYLNKTSFN 280
Query: 188 VAAFDFTTKGILQAA-VQGELWRLKD-SNGKPPGFIGILPQNAVTFIDNHDTG------S 239
+ FD LQAA QG + ++ NG + P +VTF+DNHDT S
Sbjct: 281 QSVFDVPLHFNLQAASSQGGGYDMRKLLNGT---VVSKHPLKSVTFVDNHDTQPGQSLES 337
Query: 240 TQRLWPFPSDKVMLGYAYILT-HPGTPCIFY 269
T + W P L YA+ILT G P +FY
Sbjct: 338 TVQTWFKP-----LAYAFILTRESGYPQVFY 363
>pdb|1BLI|A Chain A, Bacillus Licheniformis Alpha-Amylase
Length = 483
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 86/316 (27%), Positives = 126/316 (39%), Gaps = 84/316 (26%)
Query: 11 SKYGSQADLKSLIQAFRQKGIKCLADMVINHR---------TAERKD------------- 48
+KYG++ +L+S I++ + I D+VINH+ TA D
Sbjct: 75 TKYGTKGELQSAIKSLHSRDINVYGDVVINHKGGADATEDVTAVEVDPADRNRVISGEHL 134
Query: 49 ----------GRGI--------YCIFEGGTSDDRLDWGPSFICRG---DKEYSDGQGNDD 87
GRG + F+G D+ + +G D E S+ GN
Sbjct: 135 IKAWTHFHFPGRGSTYSDFKWHWYHFDGTDWDESRKLNRIYKFQGKAWDWEVSNEFGN-- 192
Query: 88 TGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYM----E 143
D+ DID+ +P V E+ W W E+ DG+R D VK S + ++ E
Sbjct: 193 --YDYLMYADIDYDHPDVAAEIKRWGTWYANELQLDGFRLDAVKHIKFSFLRDWVNHVRE 250
Query: 144 NTSPD-FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAA 202
T + F V E W SY GAL++++ + FD AA
Sbjct: 251 KTGKEMFTVAEYW---SYD------------LGALENYLNKTNFNHSVFDVPLHYQFHAA 295
Query: 203 -VQGELWRLKD-SNGKPPGFIGILPQNAVTFIDNHDTG------STQRLWPFPSDKVMLG 254
QG + ++ NG + P +VTF+DNHDT ST + W P L
Sbjct: 296 STQGGGYDMRKLLNGT---VVSKHPLKSVTFVDNHDTQPGQSLESTVQTWFKP-----LA 347
Query: 255 YAYILT-HPGTPCIFY 269
YA+ILT G P +FY
Sbjct: 348 YAFILTRESGYPQVFY 363
>pdb|1OB0|A Chain A, Kinetic Stabilization Of Bacillus Licheniformis-Amylase
Through Introduction Of Hydrophobic Residues At The
Surface
Length = 483
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 124/316 (39%), Gaps = 84/316 (26%)
Query: 11 SKYGSQADLKSLIQAFRQKGIKCLADMVINHR---------TAERKD------------- 48
+KYG++ +L+S I++ + I D+VINH+ TA D
Sbjct: 75 TKYGTKGELQSAIKSLHSRDINVYGDVVINHKGGADATEDVTAVEVDPADRNRVISGEVL 134
Query: 49 ----------GRGI--------YCIFEGGTSDDRLDWGPSFICRG---DKEYSDGQGNDD 87
GRG + F+G D+ + +G D E S+ GN
Sbjct: 135 IKAWTHFHFPGRGSTYSDFKWHWYHFDGTDWDESRKLNRIYKFQGKAWDWEVSNEFGN-- 192
Query: 88 TGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSP 147
D+ DID+ +P V E+ W W E+ DG+R D VK S + ++ +
Sbjct: 193 --YDYLMYADIDYDHPDVVAEIKRWGTWYANELQLDGFRLDAVKHIKFSFLRDWVNHVRE 250
Query: 148 D-----FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAA 202
F V E W SY GAL++++ + FD AA
Sbjct: 251 KTGKEMFTVAEYW---SYD------------LGALENYLNKTNFNHSVFDVPLHYQFHAA 295
Query: 203 -VQGELWRLKD-SNGKPPGFIGILPQNAVTFIDNHDTG------STQRLWPFPSDKVMLG 254
QG + ++ NG + P +VTF+DNHDT ST + W P L
Sbjct: 296 STQGGGYDMRKLLNGT---VVSKHPLKSVTFVDNHDTQPGQSLESTVQTWFKP-----LA 347
Query: 255 YAYILT-HPGTPCIFY 269
YA+ILT G P +FY
Sbjct: 348 YAFILTRESGYPQVFY 363
>pdb|1BPL|B Chain B, Glycosyltransferase
Length = 294
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 81/195 (41%), Gaps = 41/195 (21%)
Query: 91 DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPD-- 148
D+ DID+ +P V E+ W W E+ DG+R D VK S + ++ +
Sbjct: 5 DYLMYADIDYDHPDVAAEIKRWGTWYANELQLDGFRLDAVKHIKFSFLRDWVNHVREKTG 64
Query: 149 ---FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAA-VQ 204
F V E W + GAL++++ + FD AA Q
Sbjct: 65 KEMFTVAEYWQN---------------DLGALENYLNKTNFNHSVFDVPLHYQFHAASTQ 109
Query: 205 G---ELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTG------STQRLWPFPSDKVMLGY 255
G ++ +L +S + P AVTF+DNHDT ST + W P L Y
Sbjct: 110 GGGYDMRKLLNST-----VVSKHPLKAVTFVDNHDTQPGQSLESTVQTWFKP-----LAY 159
Query: 256 AYILT-HPGTPCIFY 269
A+ILT G P +FY
Sbjct: 160 AFILTRESGYPQVFY 174
>pdb|1SMA|A Chain A, Crystal Structure Of A Maltogenic Amylase
pdb|1SMA|B Chain B, Crystal Structure Of A Maltogenic Amylase
Length = 588
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 104/261 (39%), Gaps = 26/261 (9%)
Query: 13 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFI 72
+G + LK+L++ +KGI+ + D V NH E + + + G + DW F
Sbjct: 219 FGDKETLKTLVKRCHEKGIRVMLDAVFNHCGYEFAPFQD---VLKNGAASRYKDW---FH 272
Query: 73 CRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG 132
R ++ + N DT P ++ +P V++ L D + E DGWR D
Sbjct: 273 IREFPLQTEPRPNYDTFAFVPHMPKLNTAHPEVKRYLLDVATYWIREFDIDGWRLDVANE 332
Query: 133 YAPSITKVY---MENTSPD-FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAV 188
+ + ++ PD + +GE W D P RG D V A
Sbjct: 333 IDHQFWREFRQAVKALKPDVYILGEIWH------DAMP-----WLRGDQFDAVMNYPLAD 381
Query: 189 AAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPS 248
AA F K + A+ + RL P + + A + +HDT +
Sbjct: 382 AALRFFAKEDMSASEFAD--RLMHVLHSYPKQVN---EAAFNLLGSHDTPRLLTVCGGDV 436
Query: 249 DKVMLGYAYILTHPGTPCIFY 269
KV L + + LT G+PCI+Y
Sbjct: 437 RKVKLLFLFQLTFTGSPCIYY 457
>pdb|1J0H|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0H|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0I|A Chain A, Crystal Structure Of Neopullulanase Complex With Panose
pdb|1J0I|B Chain B, Crystal Structure Of Neopullulanase Complex With Panose
Length = 588
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 106/266 (39%), Gaps = 36/266 (13%)
Query: 13 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFI 72
+G + LK+LI +KGI+ + D V NH E + ++ + G S DW F
Sbjct: 219 FGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVW---KNGESSKYKDW---FH 272
Query: 73 CRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG 132
++ + N DT P ++ NP V++ L D + E DGWR D
Sbjct: 273 IHEFPLQTEPRPNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLDVANE 332
Query: 133 YAPSITKVYMENT---SPD-FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA-AGGA 187
+ + + PD + +GE W D P W++ A
Sbjct: 333 IDHEFWREFRQEVKALKPDVYILGEIWH------DAMP-------------WLRGDQFDA 373
Query: 188 VAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQN----AVTFIDNHDTGSTQRL 243
V + F T G+L+ + E+ + +N + + P N A + +HDT +
Sbjct: 374 VMNYPF-TDGVLRFFAKEEISARQFAN-QMMHVLHSYPNNVNEAAFNLLGSHDTSRILTV 431
Query: 244 WPFPSDKVMLGYAYILTHPGTPCIFY 269
KV L + + LT G+PCI+Y
Sbjct: 432 CGGDIRKVKLLFLFQLTFTGSPCIYY 457
>pdb|1J0J|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0J|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0K|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
pdb|1J0K|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
Length = 588
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 106/266 (39%), Gaps = 36/266 (13%)
Query: 13 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFI 72
+G + LK+LI +KGI+ + D V NH E + ++ + G S DW F
Sbjct: 219 FGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVW---KNGESSKYKDW---FH 272
Query: 73 CRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG 132
++ + N DT P ++ NP V++ L D + E DGWR D
Sbjct: 273 IHEFPLQTEPRPNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLDVANE 332
Query: 133 YAPSITKVYMENT---SPD-FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA-AGGA 187
+ + + PD + +G+ W D P W++ A
Sbjct: 333 IDHEFWREFRQEVKALKPDVYILGQIWH------DAMP-------------WLRGDQFDA 373
Query: 188 VAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQN----AVTFIDNHDTGSTQRL 243
V + F T G+L+ + E+ + +N + + P N A + +HDT +
Sbjct: 374 VMNYPF-TDGVLRFFAKEEISARQFAN-QMMHVLHSYPNNVNEAAFNLLGSHDTSRILTV 431
Query: 244 WPFPSDKVMLGYAYILTHPGTPCIFY 269
KV L + + LT G+PCI+Y
Sbjct: 432 CGGDIRKVKLLFLFQLTFTGSPCIYY 457
>pdb|1GVI|A Chain A, Thermus Maltogenic Amylase In Complex With Beta-Cd
pdb|1GVI|B Chain B, Thermus Maltogenic Amylase In Complex With Beta-Cd
Length = 588
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 103/261 (39%), Gaps = 26/261 (9%)
Query: 13 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFI 72
+G + LK+L++ +KGI+ + D V NH E + + + G + DW F
Sbjct: 219 FGDKETLKTLVKRCHEKGIRVMLDAVFNHCGYEFAPFQD---VLKNGAASRYKDW---FH 272
Query: 73 CRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG 132
R ++ + N DT P ++ +P V++ L D + E DGWR D
Sbjct: 273 IREFPLQTEPRPNYDTFAFVPHMPKLNTAHPEVKRYLLDVATYWIREFDIDGWRLDVANE 332
Query: 133 YAPSITKVY---MENTSPD-FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAV 188
+ + ++ PD + +G W D P RG D V A
Sbjct: 333 IDHQFWREFRQAVKALKPDVYILGLIWH------DAMP-----WLRGDQFDAVMNYPLAD 381
Query: 189 AAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPS 248
AA F K + A+ + RL P + + A + +HDT +
Sbjct: 382 AALRFFAKEDMSASEFAD--RLMHVLHSYPKQVN---EAAFNLLGSHDTPRLLTVCGGDV 436
Query: 249 DKVMLGYAYILTHPGTPCIFY 269
KV L + + LT G+PCI+Y
Sbjct: 437 RKVKLLFLFQLTFTGSPCIYY 457
>pdb|1PJ9|A Chain A, Bacillus Circulans Strain 251 Loop Mutant 183-195
Length = 686
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 113/281 (40%), Gaps = 56/281 (19%)
Query: 13 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTSDD 63
YG+ AD ++LI A K IK + D NH + D GR +Y GG ++D
Sbjct: 112 YGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGR-LYDNGTLLGGYTND 170
Query: 64 RLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGF 122
+ F G ++S + D + D++H N V L D + WL ++G
Sbjct: 171 TQNL---FHHNGGTDFSSYE--DGIYRNLYDLADLNHNNSTVDVYLKDAIKMWL--DLGI 223
Query: 123 DGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKD 179
DG R D VK K +M N P F GE + G + + + H+
Sbjct: 224 DGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFL-------GVNEVSPENHK----- 271
Query: 180 WVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNA---------VT 230
+ +G ++ F F K + Q +D+ G +L +A VT
Sbjct: 272 FANESGMSLLDFRFAQK-VRQV--------FRDNTDNMYGLKAMLEGSAADYAQVDDQVT 322
Query: 231 FIDNHDTGSTQRLWPFPSDKVML--GYAYILTHPGTPCIFY 269
FIDNHD +R +++ L A+ LT G P I+Y
Sbjct: 323 FIDNHD---MERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1PEZ|A Chain A, Bacillus Circulans Strain 251 Mutant A230v
Length = 686
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 114/281 (40%), Gaps = 56/281 (19%)
Query: 13 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTSDD 63
YG+ AD ++LI A K IK + D NH + D GR +Y GG ++D
Sbjct: 112 YGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGR-LYDNGTLLGGYTND 170
Query: 64 RLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGF 122
+ F G ++S + + ++ D++H N V L D + WL ++G
Sbjct: 171 TQNL---FHHNGGTDFSTTE--NGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL--DLGI 223
Query: 123 DGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKD 179
DG R D VK K +M N P F GE + G + + + H+
Sbjct: 224 DGIRMDVVKHMPFGWQKSFMAAVNNYKPVFTFGEWFL-------GVNEVSPENHK----- 271
Query: 180 WVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNA---------VT 230
+ +G ++ F F K + Q +D+ G +L +A VT
Sbjct: 272 FANESGMSLLDFRFAQK-VRQV--------FRDNTDNMYGLKAMLEGSAADYAQVDDQVT 322
Query: 231 FIDNHDTGSTQRLWPFPSDKVML--GYAYILTHPGTPCIFY 269
FIDNHD +R +++ L A+ LT G P I+Y
Sbjct: 323 FIDNHD---MERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1TCM|A Chain A, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
pdb|1TCM|B Chain B, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
Length = 686
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 114/281 (40%), Gaps = 56/281 (19%)
Query: 13 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTSDD 63
YG+ AD ++LI A K IK + D NH + D GR +Y GG ++D
Sbjct: 112 YGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGR-LYDNGTLLGGYTND 170
Query: 64 RLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGF 122
+ F G ++S + + ++ D++H N V L D + WL ++G
Sbjct: 171 TQNL---FHHNGGTDFSTTE--NGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL--DLGI 223
Query: 123 DGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKD 179
DG R D VK K +M N P F GE + G + + + H+
Sbjct: 224 DGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFL-------GVNEVSPENHK----- 271
Query: 180 WVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNA---------VT 230
+ +G ++ F F K + Q +D+ G +L +A VT
Sbjct: 272 FANESGMSLLDFRFAQK-VRQV--------FRDNTDNMYGLKAMLEGSAADYAQVDDQVT 322
Query: 231 FIDNHDTGSTQRLWPFPSDKVML--GYAYILTHPGTPCIFY 269
FIDNHD +R +++ L A+ LT G P I+Y
Sbjct: 323 FIDNHD---MERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1CDG|A Chain A, Nucleotide Sequence And X-Ray Structure Of Cyclodextrin
Glycosyltransferase From Bacillus Circulans Strain 251
In A Maltose-Dependent Crystal Form
pdb|1CXE|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.1 Based On Diffraction Data Of A Crystal Soaked
With Alpha-Cyclodextrin
pdb|1CXH|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.6 Based On Diffraction Data Of A Crystal Soaked
With Maltoheptaose
pdb|1CXI|A Chain A, Wild-Type Cgtase From Bacillus Circulans Strain 251 At 120
K And Ph 7.55
pdb|2CXG|A Chain A, Cyclodextrin Glycosyltransferase Complexed To The
Inhibitor Acarbose
Length = 686
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 114/281 (40%), Gaps = 56/281 (19%)
Query: 13 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTSDD 63
YG+ AD ++LI A K IK + D NH + D GR +Y GG ++D
Sbjct: 112 YGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGR-LYDNGTLLGGYTND 170
Query: 64 RLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGF 122
+ F G ++S + + ++ D++H N V L D + WL ++G
Sbjct: 171 TQNL---FHHNGGTDFSTTE--NGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL--DLGI 223
Query: 123 DGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKD 179
DG R D VK K +M N P F GE + G + + + H+
Sbjct: 224 DGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFL-------GVNEVSPENHK----- 271
Query: 180 WVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNA---------VT 230
+ +G ++ F F K + Q +D+ G +L +A VT
Sbjct: 272 FANESGMSLLDFRFAQK-VRQV--------FRDNTDNMYGLKAMLEGSAADYAQVDDQVT 322
Query: 231 FIDNHDTGSTQRLWPFPSDKVML--GYAYILTHPGTPCIFY 269
FIDNHD +R +++ L A+ LT G P I+Y
Sbjct: 323 FIDNHD---MERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1CGX|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 114/281 (40%), Gaps = 56/281 (19%)
Query: 13 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTSDD 63
YG+ AD ++LI A K IK + D NH + D GR +Y GG ++D
Sbjct: 112 YGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGR-LYDNGTLLGGYTND 170
Query: 64 RLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGF 122
+ F G ++S + + ++ D++H N V L D + WL ++G
Sbjct: 171 TQNL---FHHNGGTDFSTTE--NGIYKNLLDLADLNHNNSTVDVYLKDAIKMWL--DLGI 223
Query: 123 DGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKD 179
DG R D VK K +M N P F GE + G + + + H+
Sbjct: 224 DGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFL-------GVNEVSPENHK----- 271
Query: 180 WVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNA---------VT 230
+ +G ++ F F K + Q +D+ G +L +A VT
Sbjct: 272 FANESGMSLLDFRFAQK-VRQV--------FRDNTDNMYGLKAMLEGSAADYAQVDDQVT 322
Query: 231 FIDNHDTGSTQRLWPFPSDKVML--GYAYILTHPGTPCIFY 269
FIDNHD +R +++ L A+ LT G P I+Y
Sbjct: 323 FIDNHD---MERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|2GUY|A Chain A, Orthorhombic Crystal Structure (Space Group P21212) Of
Aspergillus Niger Alpha-Amylase At 1.6 A Resolution
pdb|2GVY|A Chain A, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase
In Complex With Maltose At 1.8 A Resolution
pdb|2GVY|B Chain B, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase
In Complex With Maltose At 1.8 A Resolution
pdb|6TAA|A Chain A, Structure And Molecular Model Refinement Of Aspergillus
Oryzae (Taka) Alpha-Amylase: An Application Of The
Simulated-Annealing Method
pdb|7TAA|A Chain A, Family 13 Alpha Amylase In Complex With Acarbose
pdb|3KWX|A Chain A, Chemically Modified Taka Alpha-Amylase
Length = 478
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 5 LYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDR 64
+Y L+ YG+ DLK+L A ++G+ + D+V NH + Y +F+ +S D
Sbjct: 87 IYSLN-ENYGTADDLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDY 145
Query: 65 LDWGP-SFICRGDKEYSDGQGNDDT--GEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIG 121
P FI + Y D +D G++ PD+D V+ E DW+ L +
Sbjct: 146 FH--PFCFI----QNYEDQTQVEDCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYS 199
Query: 122 FDGWRFDFVK 131
DG R D VK
Sbjct: 200 IDGLRIDTVK 209
>pdb|2TAA|A Chain A, Structure And Possible Catalytic Residues Of Taka-Amylase
A
pdb|2TAA|B Chain B, Structure And Possible Catalytic Residues Of Taka-Amylase
A
pdb|2TAA|C Chain C, Structure And Possible Catalytic Residues Of Taka-Amylase
A
Length = 478
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 5 LYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDR 64
+Y L+ YG+ DLK+L A ++G+ + D+V NH + Y +F+ +S D
Sbjct: 87 IYSLN-ENYGTADDLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDY 145
Query: 65 LDWGP-SFICRGDKEYSDGQGNDDT--GEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIG 121
P FI + Y D +D G++ PD+D V+ E DW+ L +
Sbjct: 146 FH--PFCFI----QNYEDQTQVEDCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYS 199
Query: 122 FDGWRFDFVK 131
DG R D VK
Sbjct: 200 IDGLRIDTVK 209
>pdb|1CGW|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 114/281 (40%), Gaps = 56/281 (19%)
Query: 13 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTSDD 63
YG+ AD ++LI A K IK + D NH + D GR +Y GG ++D
Sbjct: 112 YGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGR-LYDNGTLLGGYTND 170
Query: 64 RLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGF 122
+ F G ++S + + ++ D++H N V L D + WL ++G
Sbjct: 171 TQNL---FHHNGGTDFSTTE--NGIYKNLGDLADLNHNNSTVDVYLKDAIKMWL--DLGI 223
Query: 123 DGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKD 179
DG R D VK K +M N P F GE + G + + + H+
Sbjct: 224 DGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFL-------GVNEVSPENHK----- 271
Query: 180 WVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNA---------VT 230
+ +G ++ F F K + Q +D+ G +L +A VT
Sbjct: 272 FANESGMSLLDFRFAQK-VRQV--------FRDNTDNMYGLKAMLEGSAADYAQVDDQVT 322
Query: 231 FIDNHDTGSTQRLWPFPSDKVML--GYAYILTHPGTPCIFY 269
FIDNHD +R +++ L A+ LT G P I+Y
Sbjct: 323 FIDNHD---MERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1DTU|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase: A Mutant Y89dS146P COMPLEXED TO AN
Hexasaccharide Inhibitor
Length = 686
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 114/281 (40%), Gaps = 56/281 (19%)
Query: 13 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTSDD 63
YG+ AD ++LI A K IK + D NH + D GR +Y GG ++D
Sbjct: 112 YGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASPDQPSFAENGR-LYDNGTLLGGYTND 170
Query: 64 RLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGF 122
+ F G ++S + + ++ D++H N V L D + WL ++G
Sbjct: 171 TQNL---FHHNGGTDFSTTE--NGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL--DLGI 223
Query: 123 DGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKD 179
DG R D VK K +M N P F GE + G + + + H+
Sbjct: 224 DGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFL-------GVNEVSPENHK----- 271
Query: 180 WVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNA---------VT 230
+ +G ++ F F K + Q +D+ G +L +A VT
Sbjct: 272 FANESGMSLLDFRFAQK-VRQV--------FRDNTDNMYGLKAMLEGSAADYAQVDDQVT 322
Query: 231 FIDNHDTGSTQRLWPFPSDKVML--GYAYILTHPGTPCIFY 269
FIDNHD +R +++ L A+ LT G P I+Y
Sbjct: 323 FIDNHD---MERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1CGV|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
pdb|2DIJ|A Chain A, Complex Of A Y195f Mutant Cgtase From B. Circulans Strain
251 Complexed With A Maltononaose Inhibitor At Ph 9.8
Obtained After Soaking The Crystal With Acarbose And
Maltohexaose
Length = 686
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 114/281 (40%), Gaps = 56/281 (19%)
Query: 13 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTSDD 63
YG+ AD ++LI A K IK + D NH + D GR +Y GG ++D
Sbjct: 112 YGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGR-LYDNGTLLGGYTND 170
Query: 64 RLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGF 122
+ F G ++S + + ++ D++H N V L D + WL ++G
Sbjct: 171 TQNL---FHHNGGTDFSTTE--NGIYKNLFDLADLNHNNSTVDVYLKDAIKMWL--DLGI 223
Query: 123 DGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKD 179
DG R D VK K +M N P F GE + G + + + H+
Sbjct: 224 DGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFL-------GVNEVSPENHK----- 271
Query: 180 WVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNA---------VT 230
+ +G ++ F F K + Q +D+ G +L +A VT
Sbjct: 272 FANESGMSLLDFRFAQK-VRQV--------FRDNTDNMYGLKAMLEGSAADYAQVDDQVT 322
Query: 231 FIDNHDTGSTQRLWPFPSDKVML--GYAYILTHPGTPCIFY 269
FIDNHD +R +++ L A+ LT G P I+Y
Sbjct: 323 FIDNHD---MERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1CGY|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 114/281 (40%), Gaps = 56/281 (19%)
Query: 13 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTSDD 63
YG+ AD ++LI A K IK + D NH + D GR +Y GG ++D
Sbjct: 112 YGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGR-LYDNGTLLGGYTND 170
Query: 64 RLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGF 122
+ F G ++S + + ++ D++H N V L D + WL ++G
Sbjct: 171 TQNL---FHHNGGTDFSTTE--NGIYKNLWDLADLNHNNSTVDVYLKDAIKMWL--DLGI 223
Query: 123 DGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKD 179
DG R D VK K +M N P F GE + G + + + H+
Sbjct: 224 DGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFL-------GVNEVSPENHK----- 271
Query: 180 WVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNA---------VT 230
+ +G ++ F F K + Q +D+ G +L +A VT
Sbjct: 272 FANESGMSLLDFRFAQK-VRQV--------FRDNTDNMYGLKAMLEGSAADYAQVDDQVT 322
Query: 231 FIDNHDTGSTQRLWPFPSDKVML--GYAYILTHPGTPCIFY 269
FIDNHD +R +++ L A+ LT G P I+Y
Sbjct: 323 FIDNHD---MERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1KCK|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant N193g
Length = 686
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 112/281 (39%), Gaps = 56/281 (19%)
Query: 13 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTSDD 63
YG+ AD ++LI A K IK + D NH + D GR +Y GG ++D
Sbjct: 112 YGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGR-LYDNGTLLGGYTND 170
Query: 64 RLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGF 122
+ F G ++S + G D++H N V L D + WL ++G
Sbjct: 171 TQNL---FHHNGGTDFSTTENGIYKG--LYDLADLNHNNSTVDVYLKDAIKMWL--DLGI 223
Query: 123 DGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKD 179
DG R D VK K +M N P F GE + G + + + H+
Sbjct: 224 DGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFL-------GVNEVSPENHK----- 271
Query: 180 WVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNA---------VT 230
+ +G ++ F F K + Q +D+ G +L +A VT
Sbjct: 272 FANESGMSLLDFRFAQK-VRQV--------FRDNTDNMYGLKAMLEGSAADYAQVDDQVT 322
Query: 231 FIDNHDTGSTQRLWPFPSDKVML--GYAYILTHPGTPCIFY 269
FIDNHD +R +++ L A+ LT G P I+Y
Sbjct: 323 FIDNHD---MERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1CXL|A Chain A, Complex Between A Covalent Intermediate And Bacillus
Circulans Strain 251 Cgtase E257q
Length = 686
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 114/281 (40%), Gaps = 56/281 (19%)
Query: 13 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTSDD 63
YG+ AD ++LI A K IK + D NH + D GR +Y GG ++D
Sbjct: 112 YGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGR-LYDNGTLLGGYTND 170
Query: 64 RLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGF 122
+ F G ++S + + ++ D++H N V L D + WL ++G
Sbjct: 171 TQNL---FHHNGGTDFSTTE--NGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL--DLGI 223
Query: 123 DGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKD 179
DG R D VK K +M N P F G+ + G + + + H+
Sbjct: 224 DGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGQWFL-------GVNEVSPENHK----- 271
Query: 180 WVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNA---------VT 230
+ +G ++ F F K + Q +D+ G +L +A VT
Sbjct: 272 FANESGMSLLDFRFAQK-VRQV--------FRDNTDNMYGLKAMLEGSAADYAQVDDQVT 322
Query: 231 FIDNHDTGSTQRLWPFPSDKVML--GYAYILTHPGTPCIFY 269
FIDNHD +R +++ L A+ LT G P I+Y
Sbjct: 323 FIDNHD---MERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1OT2|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135n
Length = 686
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 114/281 (40%), Gaps = 56/281 (19%)
Query: 13 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTSDD 63
YG+ AD ++LI A K IK + + NH + D GR +Y GG ++D
Sbjct: 112 YGTIADFQNLIAAAHAKNIKVIINFAPNHTSPASSDQPSFAENGR-LYDNGTLLGGYTND 170
Query: 64 RLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGF 122
+ F G ++S + + ++ D++H N V L D + WL ++G
Sbjct: 171 TQNL---FHHNGGTDFSTTE--NGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL--DLGI 223
Query: 123 DGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKD 179
DG R D VK K +M N P F GE + G + + + H+
Sbjct: 224 DGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFL-------GVNEVSPENHK----- 271
Query: 180 WVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNA---------VT 230
+ +G ++ F F K + Q +D+ G +L +A VT
Sbjct: 272 FANESGMSLLDFRFAQK-VRQV--------FRDNTDNMYGLKAMLEGSAADYAQVDDQVT 322
Query: 231 FIDNHDTGSTQRLWPFPSDKVML--GYAYILTHPGTPCIFY 269
FIDNHD +R +++ L A+ LT G P I+Y
Sbjct: 323 FIDNHD---MERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1EA9|C Chain C, Cyclomaltodextrinase
pdb|1EA9|D Chain D, Cyclomaltodextrinase
Length = 583
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 100/267 (37%), Gaps = 35/267 (13%)
Query: 12 KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRG---IYCIFEGGTSDDRLDWG 68
++G + LK L+ ++GI+ L D V NH GR + + G DW
Sbjct: 214 QFGDKDTLKKLVDLCHERGIRVLLDAVFNH------SGRTFPPFVDVLKNGEKSKYKDW- 266
Query: 69 PSFICRG-DKEYSDGQGNDDTGEDFQP-APDIDHLNPRVQKELSDWMNWLKTEIGFDGWR 126
F R E DG DT F+P P ++ +P V++ L + E G DGWR
Sbjct: 267 --FHIRSLPLEVVDGIPTYDTFA-FEPLMPKLNTEHPDVKEYLLKAAEYWIRETGIDGWR 323
Query: 127 FDFVKGYAPSITKVY---MENTSPD-FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQ 182
D + + + ++ +PD + +GE W S +G D V
Sbjct: 324 LDVANEVSHQFWREFRRVVKQANPDAYILGEVWHESSIWLEGDQ-----------FDAVM 372
Query: 183 AAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQR 242
A DF I A + K G P ++ +D+HDT
Sbjct: 373 NYPFTNAVLDFFIHQIADAE-KFSFMLGKQLAGYPRQASEVM----FNLLDSHDTARLLT 427
Query: 243 LWPFPSDKVMLGYAYILTHPGTPCIFY 269
K+ L + T+ GTPCI+Y
Sbjct: 428 QADGDKRKMKLAVLFQFTYFGTPCIYY 454
>pdb|1QHO|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, MaltoseACARBOSE COMPLEX
pdb|1QHP|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, Maltose Complex
Length = 686
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 105/279 (37%), Gaps = 43/279 (15%)
Query: 13 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFI 72
+G+ +L+ Q GIK + D V NH T + + EGG + + ++
Sbjct: 104 FGNWTTFDTLVNDAHQNGIKVIVDFVPNHSTPFKANDS---TFAEGGALYNNGTYMGNYF 160
Query: 73 CRGDKEYSDGQGNDDTGEDFQPA-------------PDIDHLNPRVQKELSDWMNWLKTE 119
K Y G+ +D A D+ N + + L+D L
Sbjct: 161 DDATKGYFHHNGDISNWDDRYEAQWKNFTDPAGFSLADLSQENGTIAQYLTDAAVQLVAH 220
Query: 120 IGFDGWRFDFVK----GYAPSIT-KVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHR 174
G DG R D VK G++ S+ K+Y + F VGE W YG D G
Sbjct: 221 -GADGLRIDAVKHFNSGFSKSLADKLYQK--KDIFLVGE-W----YGDD-------PGTA 265
Query: 175 GALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNG--KPPGFIGILPQNAVTFI 232
L+ A V DF +++ + D N G +N +TFI
Sbjct: 266 NHLEKVRYANNSGVNVLDFDLNTVIRNVFGTFTQTMYDLNNMVNQTGNEYKYKENLITFI 325
Query: 233 DNHDTGSTQRLWPFPSDKVML--GYAYILTHPGTPCIFY 269
DNHD R S+K L A+ILT GTP I+Y
Sbjct: 326 DNHD---MSRFLSVNSNKANLHQALAFILTSRGTPSIYY 361
>pdb|1LWH|A Chain A, Crystal Structure Of T. Maritima
4-Alpha-Glucanotransferase
pdb|1LWH|B Chain B, Crystal Structure Of T. Maritima
4-Alpha-Glucanotransferase
pdb|1LWJ|A Chain A, Crystal Structure Of T. Maritima 4-Alpha-
GlucanotransferaseACARBOSE COMPLEX
pdb|1LWJ|B Chain B, Crystal Structure Of T. Maritima 4-Alpha-
GlucanotransferaseACARBOSE COMPLEX
Length = 441
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 117/279 (41%), Gaps = 50/279 (17%)
Query: 11 SKYGSQADLKSLIQAFRQKGIKCLADMVINH----RTAERKDGRG-----IYCIFEGGTS 61
++YGS+ + K +I+AF GIK + D+ I+H T +K +G Y ++ +
Sbjct: 64 AEYGSEREFKEMIEAFHDSGIKVVLDLPIHHTGFLHTWFQKALKGDPHYRDYYVWANKET 123
Query: 62 --DDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQP-APDIDHLNPRVQKELSDWMNWLKT 118
D+R +W G+K + + F P +PD+++ NP+V E+ + L
Sbjct: 124 DLDERREWD------GEKIWHPLEDGRFYRGLFGPFSPDLNYDNPQVFDEMKRLVLHL-L 176
Query: 119 EIGFDGWRFDFVKGYAPSIT------KVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDG 172
++G DG+RFD K +I K ++ + F + E W +A
Sbjct: 177 DMGVDGFRFDAAKHMRDTIEQNVRFWKYFLSDLKGIF-LAEIW----------AEARMVD 225
Query: 173 HRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWR-LKDSNGKPPGFIGILPQNAVTF 231
G + ++ +F T ++ AV E R L +S + LP V F
Sbjct: 226 EHGRIFGYM---------LNFDTSHCIKEAVWKENTRVLIESIERAVIAKDYLP---VNF 273
Query: 232 IDNHDTGSTQRLW-PFPSDKVMLGYAYILTHPGTPCIFY 269
NHD F +K+ L + + T PG P +FY
Sbjct: 274 TSNHDMSRLASFEGGFSKEKIKLSISILFTLPGVPLVFY 312
>pdb|1OT1|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135a
Length = 686
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 113/281 (40%), Gaps = 56/281 (19%)
Query: 13 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTSDD 63
YG+ AD ++LI A K IK + NH + D GR +Y GG ++D
Sbjct: 112 YGTIADFQNLIAAAHAKNIKVIIAFAPNHTSPASSDQPSFAENGR-LYDNGTLLGGYTND 170
Query: 64 RLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGF 122
+ F G ++S + + ++ D++H N V L D + WL ++G
Sbjct: 171 TQNL---FHHNGGTDFSTTE--NGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL--DLGI 223
Query: 123 DGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKD 179
DG R D VK K +M N P F GE + G + + + H+
Sbjct: 224 DGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFL-------GVNEVSPENHK----- 271
Query: 180 WVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNA---------VT 230
+ +G ++ F F K + Q +D+ G +L +A VT
Sbjct: 272 FANESGMSLLDFRFAQK-VRQV--------FRDNTDNMYGLKAMLEGSAADYAQVDDQVT 322
Query: 231 FIDNHDTGSTQRLWPFPSDKVML--GYAYILTHPGTPCIFY 269
FIDNHD +R +++ L A+ LT G P I+Y
Sbjct: 323 FIDNHD---MERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1CYG|A Chain A, Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgtase)
Length = 680
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 117/282 (41%), Gaps = 58/282 (20%)
Query: 13 YGSQADLKSLIQAFRQKGIKCLADMVINHRT-------AERKDGRGIY---CIFEGGTSD 62
+G+ +D + L+ A KGIK + D NH + + ++GR +Y + G T+D
Sbjct: 108 FGTLSDFQRLVDAAHAKGIKVIIDFAPNHTSPASETNPSYMENGR-LYDNGTLLGGYTND 166
Query: 63 DRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIG 121
+ F G +S + D + D++H NP + + L D + W+ ++G
Sbjct: 167 ANM----YFHHNGGTTFSSLE--DGIYRNLFDLADLNHQNPVIDRYLKDAVKMWI--DMG 218
Query: 122 FDGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALK 178
DG R D VK K M +N P F GE W + + + DAN
Sbjct: 219 IDGIRMDAVKHMPFGWQKSLMDEIDNYRPVFTFGE-W----FLSENEVDANN-------H 266
Query: 179 DWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNA---------V 229
+ +G ++ F F K + Q L++++ GF ++ A V
Sbjct: 267 YFANESGMSLLDFRFGQK-LRQV--------LRNNSDNWYGFNQMIQDTASAYDEVLDQV 317
Query: 230 TFIDNHDTGSTQRLWPFPSD--KVMLGYAYILTHPGTPCIFY 269
TFIDNHD R D KV + A +LT G P I+Y
Sbjct: 318 TFIDNHD---MDRFMIDGGDPRKVDMALAVLLTSRGVPNIYY 356
>pdb|1CXK|A Chain A, Complex Between A Maltononaose Substrate And Bacillus
Circulans Strain 251 Cgtase E257qD229N
pdb|1D3C|A Chain A, Michaelis Complex Of Bacillus Circulans Strain 251
Cyclodextrin Glycosyltransferase With Gamma-Cyclodextrin
pdb|1CXF|A Chain A, Complex Of A (D229nE257Q) DOUBLE MUTANT CGTASE FROM
Bacillus Circulans Strain 251 With Maltotetraose At 120
K And Ph 9.1 Obtained After Soaking The Crystal With
Alpha- Cyclodextrin
Length = 686
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 114/281 (40%), Gaps = 56/281 (19%)
Query: 13 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTSDD 63
YG+ AD ++LI A K IK + D NH + D GR +Y GG ++D
Sbjct: 112 YGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGR-LYDNGTLLGGYTND 170
Query: 64 RLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGF 122
+ F G ++S + + ++ D++H N V L D + WL ++G
Sbjct: 171 TQNL---FHHNGGTDFSTTE--NGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL--DLGI 223
Query: 123 DGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKD 179
DG R + VK K +M N P F G+ + G + + + H+
Sbjct: 224 DGIRMNAVKHMPFGWQKSFMAAVNNYKPVFTFGQWFL-------GVNEVSPENHK----- 271
Query: 180 WVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNA---------VT 230
+ +G ++ F F K + Q +D+ G +L +A VT
Sbjct: 272 FANESGMSLLDFRFAQK-VRQV--------FRDNTDNMYGLKAMLEGSAADYAQVDDQVT 322
Query: 231 FIDNHDTGSTQRLWPFPSDKVML--GYAYILTHPGTPCIFY 269
FIDNHD +R +++ L A+ LT G P I+Y
Sbjct: 323 FIDNHD---MERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1D7F|A Chain A, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1D7F|B Chain B, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1DED|A Chain A, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
pdb|1DED|B Chain B, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
Length = 686
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 112/275 (40%), Gaps = 44/275 (16%)
Query: 13 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTSDD 63
YG+ D K+LI IK + D NH + D GR +Y GG ++D
Sbjct: 112 YGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGR-LYDNGNLLGGYTND 170
Query: 64 RLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGF 122
+ F G ++S + + ++ D++H N V L D + WL ++G
Sbjct: 171 TQNL---FHHYGGTDFSTIE--NGIYKNLYDLADLNHNNSSVDVYLKDAIKMWL--DLGV 223
Query: 123 DGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLS-YGPDGKPDANQDGHRGALK 178
DG R D VK K +M N P F GE + ++ P+ AN+ G +L
Sbjct: 224 DGIRVDAVKNMPFGWQKSFMATINNYKPVFTFGEWFLGVNEISPEYHQFANESGM--SLL 281
Query: 179 DWVQAAGGAVAAFDFTTKGI--LQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHD 236
D+ + A A F T + L+A ++G N + VTFIDNHD
Sbjct: 282 DF-RFAQKARQVFRDNTDNMYGLKAMLEGSEVDYAQVNDQ------------VTFIDNHD 328
Query: 237 TGSTQRLWPFPSDKVML--GYAYILTHPGTPCIFY 269
+R D+ L A+ LT G P I+Y
Sbjct: 329 ---MERFHTSNGDRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1V3K|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3K|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3M|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
pdb|1V3M|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
Length = 686
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 112/275 (40%), Gaps = 44/275 (16%)
Query: 13 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTSDD 63
YG+ D K+LI IK + D NH + D GR +Y GG ++D
Sbjct: 112 YGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGR-LYDNGNLLGGYTND 170
Query: 64 RLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGF 122
+ F G ++S + + ++ D++H N V L D + WL ++G
Sbjct: 171 TQNL---FHHYGGTDFSTIE--NGIYKNLYDLADLNHNNSSVDVYLKDAIKMWL--DLGV 223
Query: 123 DGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLS-YGPDGKPDANQDGHRGALK 178
DG R D VK K +M N P F GE + ++ P+ AN+ G +L
Sbjct: 224 DGIRVDAVKHMPFGWQKSFMATINNYKPVFTFGEWFLGVNEISPEYHQFANESGM--SLL 281
Query: 179 DWVQAAGGAVAAFDFTTKGI--LQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHD 236
D+ + A A F T + L+A ++G N + VTFIDNHD
Sbjct: 282 DY-RFAQKARQVFRDNTDNMYGLKAMLEGSEVDYAQVNDQ------------VTFIDNHD 328
Query: 237 TGSTQRLWPFPSDKVML--GYAYILTHPGTPCIFY 269
+R D+ L A+ LT G P I+Y
Sbjct: 329 ---MERFHTSNGDRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1KCL|A Chain A, Bacillus Ciruclans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant G179l
Length = 686
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 112/286 (39%), Gaps = 66/286 (23%)
Query: 13 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY---CIFEGGTSD 62
YG+ AD ++LI A K IK + D NH + D GR +Y + G T+D
Sbjct: 112 YGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGR-LYDNGTLLGGYTND 170
Query: 63 DR----LDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLK 117
+ + G F + Y ++ D++H N V L D + WL
Sbjct: 171 TQNLFHHNLGTDFSTTENGIY----------KNLYDLADLNHNNSTVDVYLKDAIKMWL- 219
Query: 118 TEIGFDGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLSYGPDGKPDANQDGHR 174
++G DG R D VK K +M N P F GE + G + + + H+
Sbjct: 220 -DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWF-------LGVNEVSPENHK 271
Query: 175 GALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNA------ 228
+ +G ++ F F K + Q +D+ G +L +A
Sbjct: 272 -----FANESGMSLLDFRFAQK-VRQV--------FRDNTDNMYGLKAMLEGSAADYAQV 317
Query: 229 ---VTFIDNHDTGSTQRLWPFPSDKVML--GYAYILTHPGTPCIFY 269
VTFIDNHD +R +++ L A+ LT G P I+Y
Sbjct: 318 DDQVTFIDNHD---MERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1UKT|A Chain A, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
pdb|1UKT|B Chain B, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
Length = 686
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 112/275 (40%), Gaps = 44/275 (16%)
Query: 13 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTSDD 63
YG+ D K+LI IK + D NH + D GR +Y GG ++D
Sbjct: 112 YGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGR-LYDNGNLLGGYTND 170
Query: 64 RLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGF 122
+ F G ++S + + ++ D++H N V L D + WL ++G
Sbjct: 171 TQNL---FHHYGGTDFSTIE--NGIYKNLYDLADLNHNNSSVDVYLKDAIKMWL--DLGV 223
Query: 123 DGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLS-YGPDGKPDANQDGHRGALK 178
DG R D VK K +M N P F GE + ++ P+ AN+ G +L
Sbjct: 224 DGIRVDAVKHMPFGWQKSFMATINNYKPVFTFGEWFLGVNEISPEYHQFANESGM--SLL 281
Query: 179 DWVQAAGGAVAAFDFTTKGI--LQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHD 236
D+ + A A F T + L+A ++G N + VTFIDNHD
Sbjct: 282 DF-RFAQKARQVFRDNTDNMYGLKAMLEGSEVDYAQVNDQ------------VTFIDNHD 328
Query: 237 TGSTQRLWPFPSDKVML--GYAYILTHPGTPCIFY 269
+R D+ L A+ LT G P I+Y
Sbjct: 329 ---MERFHTSNGDRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1V3J|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3J|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3L|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
pdb|1V3L|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
Length = 686
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 112/275 (40%), Gaps = 44/275 (16%)
Query: 13 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTSDD 63
YG+ D K+LI IK + D NH + D GR +Y GG ++D
Sbjct: 112 YGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGR-LYDNGNLLGGYTND 170
Query: 64 RLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGF 122
+ F G ++S + + ++ D++H N V L D + WL ++G
Sbjct: 171 TQNL---FHHYGGTDFSTIE--NGIYKNLYDLADLNHNNSSVDVYLKDAIKMWL--DLGV 223
Query: 123 DGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLS-YGPDGKPDANQDGHRGALK 178
DG R D VK K +M N P F GE + ++ P+ AN+ G +L
Sbjct: 224 DGIRVDAVKHMPFGWQKSFMATINNYKPVFTFGEWFLGVNEISPEYHQFANESGM--SLL 281
Query: 179 DWVQAAGGAVAAFDFTTKGI--LQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHD 236
D ++ A A F T + L+A ++G N + VTFIDNHD
Sbjct: 282 D-LRFAQKARQVFRDNTDNMYGLKAMLEGSEVDYAQVNDQ------------VTFIDNHD 328
Query: 237 TGSTQRLWPFPSDKVML--GYAYILTHPGTPCIFY 269
+R D+ L A+ LT G P I+Y
Sbjct: 329 ---MERFHTSNGDRRKLEQALAFTLTSRGVPAIYY 360
>pdb|4CGT|A Chain A, Deletion Mutant Delta(145-150), F151d Of Cyclodextrin
Glycosyltransferase
Length = 678
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 110/266 (41%), Gaps = 32/266 (12%)
Query: 13 YGSQADLKSLIQAFRQKGIKCLADMVINHRT-AERKDGRGIY--CIFEGGTSDDRLDWGP 69
+G+ AD ++LI KGIK + D NH + A+ ++GR +Y GG ++D +
Sbjct: 112 FGTMADFQNLITTAHAKGIKIVIDFAPNHTSPADAENGR-LYDNGTLVGGYTNDTNGY-- 168
Query: 70 SFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGFDGWRFD 128
F G ++S + + ++ D +H N + K D + WL ++G DG R D
Sbjct: 169 -FHHNGGSDFSSLE--NGIYKNLYDLADFNHNNATIDKYFKDAIKLWL--DMGVDGIRVD 223
Query: 129 FVKGYAPSITKVYMENT---SPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAG 185
VK K +M + P F GE W + DA+ D+ +G
Sbjct: 224 AVKHMPLGWQKSWMSSIYAHKPVFTFGE-W----FLGSAASDADN-------TDFANKSG 271
Query: 186 GAVAAFDFTT--KGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRL 243
++ F F + + + + N + + Q VTFIDNHD +
Sbjct: 272 MSLLDFRFNSAVRNVFRDNTSNMYALDSMINSTATDYNQVNDQ--VTFIDNHDMDRF-KT 328
Query: 244 WPFPSDKVMLGYAYILTHPGTPCIFY 269
+ ++ A+ LT G P I+Y
Sbjct: 329 SAVNNRRLEQALAFTLTSRGVPAIYY 354
>pdb|1PAM|A Chain A, Cyclodextrin Glucanotransferase
pdb|1PAM|B Chain B, Cyclodextrin Glucanotransferase
pdb|1I75|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1I75|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1UKQ|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
pdb|1UKQ|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
Length = 686
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 112/275 (40%), Gaps = 44/275 (16%)
Query: 13 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTSDD 63
YG+ D K+LI IK + D NH + D GR +Y GG ++D
Sbjct: 112 YGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGR-LYDNGNLLGGYTND 170
Query: 64 RLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGF 122
+ F G ++S + + ++ D++H N V L D + WL ++G
Sbjct: 171 TQNL---FHHYGGTDFSTIE--NGIYKNLYDLADLNHNNSSVDVYLKDAIKMWL--DLGV 223
Query: 123 DGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLS-YGPDGKPDANQDGHRGALK 178
DG R D VK K +M N P F GE + ++ P+ AN+ G +L
Sbjct: 224 DGIRVDAVKHMPFGWQKSFMATINNYKPVFTFGEWFLGVNEISPEYHQFANESGM--SLL 281
Query: 179 DWVQAAGGAVAAFDFTTKGI--LQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHD 236
D+ + A A F T + L+A ++G N + VTFIDNHD
Sbjct: 282 DF-RFAQKARQVFRDNTDNMYGLKAMLEGSEVDYAQVNDQ------------VTFIDNHD 328
Query: 237 TGSTQRLWPFPSDKVML--GYAYILTHPGTPCIFY 269
+R D+ L A+ LT G P I+Y
Sbjct: 329 ---MERFHTSNGDRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1WZA|A Chain A, Crystal Structure Of Alpha-Amylase From H.Orenii
Length = 488
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 107/282 (37%), Gaps = 48/282 (17%)
Query: 13 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFI 72
YG+ D L++A Q+GIK + D+ INH T+ER + F + D ++ ++
Sbjct: 78 YGTLEDFHKLVEAAHQRGIKVIIDLPINH-TSER------HPWFLKASRDKNSEYRDYYV 130
Query: 73 CRG-DKEYSDGQGNDDTGEDFQPA-----------PDIDHLNPRVQKELSDWMN-WLKTE 119
G D + + + + + P PD+++ NP VQ+++ WLK
Sbjct: 131 WAGPDTDTKETKLDGGRVWHYSPTGMYYGYFWSGMPDLNYNNPEVQEKVIGIAKYWLKQ- 189
Query: 120 IGFDGWRFDFVKGYAPSIT-----------KVYMENTSPDFAVGEKWD-SLSYGPDGKPD 167
G DG+R D P + +E P + VGE WD S + P K
Sbjct: 190 -GVDGFRLDGAMHIFPPAQYDKNFTWWEKFRQEIEEVKPVYLVGEVWDISETVAPYFKYG 248
Query: 168 ANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQN 227
+ L + V A A F F K ++ + D +G
Sbjct: 249 FDST-FNFKLAEAVIATAKAGFPFGFNKKA-------KHIYGVYDRE------VGFGNYI 294
Query: 228 AVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFY 269
F+ NHD +K + + LT PG P I+Y
Sbjct: 295 DAPFLTNHDQNRILDQLGQDRNKARVAASIYLTLPGNPFIYY 336
>pdb|1EO5|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltoheptaose
pdb|1EO7|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltohexaose
Length = 686
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 112/281 (39%), Gaps = 56/281 (19%)
Query: 13 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTSDD 63
YG+ AD ++LI A K IK + D NH + D GR +Y GG ++D
Sbjct: 112 YGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGR-LYDNGTLLGGYTND 170
Query: 64 RLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGF 122
+ F G ++S + + ++ D++H N V L D + WL ++G
Sbjct: 171 TQNL---FHHNGGTDFSTTE--NGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL--DLGI 223
Query: 123 DGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKD 179
DG R VK K +M N P F G + G + + + H+
Sbjct: 224 DGIRMAAVKHMPFGWQKSFMAAVNNYKPVFTFGAWF-------LGVNEVSPENHK----- 271
Query: 180 WVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNA---------VT 230
+ +G ++ F F K + Q +D+ G +L +A VT
Sbjct: 272 FANESGMSLLDFRFAQK-VRQV--------FRDNTDNMYGLKAMLEGSAADYAQVDDQVT 322
Query: 231 FIDNHDTGSTQRLWPFPSDKVML--GYAYILTHPGTPCIFY 269
FIDNHD +R +++ L A+ LT G P I+Y
Sbjct: 323 FIDNHD---MERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1UKS|A Chain A, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
pdb|1UKS|B Chain B, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
Length = 686
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 110/275 (40%), Gaps = 44/275 (16%)
Query: 13 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-------GRGIY--CIFEGGTSDD 63
YG+ D K+LI IK + D NH + D GR +Y GG ++D
Sbjct: 112 YGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGR-LYDNGNLLGGYTND 170
Query: 64 RLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGF 122
+ F G + S + + ++ D++H N V L D + WL ++G
Sbjct: 171 TQNL---FHHYGGTDLSTIE--NGIYKNLYDLADLNHNNSSVDVYLKDAIKMWL--DLGV 223
Query: 123 DGWRFDFVKGYAPSITKVYM---ENTSPDFAVGEKWDSLS-YGPDGKPDANQDGHRGALK 178
DG R D VK K +M N P F GE ++ P+ AN+ G +L
Sbjct: 224 DGIRVDAVKHMPFGWQKSFMATINNYKPVFTFGEWLLGVNEISPEYHQFANESGM--SLL 281
Query: 179 DWVQAAGGAVAAFDFTTKGI--LQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHD 236
D+ + A A F T + L+A ++G N + VTFIDNHD
Sbjct: 282 DF-RFAQKARQVFRDNTDNMYGLKAMLEGSEVDYAQVNDQ------------VTFIDNHD 328
Query: 237 TGSTQRLWPFPSDKVML--GYAYILTHPGTPCIFY 269
+R D+ L A+ LT G P I+Y
Sbjct: 329 ---MERFHTSNGDRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Refined At
2.0 Angstroms Resolution
Length = 684
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 109/272 (40%), Gaps = 38/272 (13%)
Query: 13 YGSQADLKSLIQAFRQKGIKCLADMVINHR-------TAERKDGRGIY--CIFEGGTSDD 63
+G+ AD ++LI KGIK + D NH T+ ++GR +Y GG ++D
Sbjct: 112 FGTMADFQNLITTAHAKGIKIVIDFAPNHTSPAMETDTSFAENGR-LYDNGTLVGGYTND 170
Query: 64 RLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGF 122
+ F G ++S + + ++ D +H N + K D + WL ++G
Sbjct: 171 TNGY---FHHNGGSDFSSLE--NGIYKNLYDLADFNHNNATIDKYFKDAIKLWL--DMGV 223
Query: 123 DGWRFDFVKGYAPSITKVYMENT---SPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKD 179
DG R D VK K +M + P F GE W + DA+ D
Sbjct: 224 DGIRVDAVKHMPLGWQKSWMSSIYAHKPVFTFGE-W----FLGSAASDADN-------TD 271
Query: 180 WVQAAGGAVAAFDFTT--KGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT 237
+ +G ++ F F + + + + N + + Q VTFIDNHD
Sbjct: 272 FANKSGMSLLDFRFNSAVRNVFRDNTSNMYALDSMINSTATDYNQVNDQ--VTFIDNHDM 329
Query: 238 GSTQRLWPFPSDKVMLGYAYILTHPGTPCIFY 269
+ + ++ A+ LT G P I+Y
Sbjct: 330 -DRFKTSAVNNRRLEQALAFTLTSRGVPAIYY 360
>pdb|6CGT|A Chain A, Hoxa Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 107/280 (38%), Gaps = 54/280 (19%)
Query: 13 YGSQADLKSLIQAFRQKGIKCLADMVINHR-------TAERKDGRGIYCIFEGGTSDDRL 65
+G+ AD ++LI KGIK + D NH T+ ++GR +++ GT
Sbjct: 112 FGTMADFQNLITTAHAKGIKIVIDFAPNHTSPAMETDTSFAENGR----LYDNGT----- 162
Query: 66 DWGPSFICRGDKEYSDGQGNDDTGEDFQP-----------APDIDHLNPRVQKELSDWMN 114
+ G ++G + + G DF D +H N + K D +
Sbjct: 163 ------LVGGYTNDTNGYFHHNGGSDFSSLENGIYKNTYDLADFNHNNATIDKYFKDAIK 216
Query: 115 -WLKTEIGFDGWRFDFVKGYAPSITKVYMENT---SPDFAVGEKW-DSLSYGPDGKPDAN 169
WL ++G DG R D VK K +M + P F GE + S + D AN
Sbjct: 217 LWL--DMGVDGIRVDAVKHMPLGWQKSWMSSIYAHKPVFTFGEWFLGSAASDADNTDFAN 274
Query: 170 QDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAV 229
+ G +L D+ F+ + + + N + + Q V
Sbjct: 275 KSGM--SLLDF---------RFNSAVRNVFRDNTSNMYALDSMINSTATDYNQVNDQ--V 321
Query: 230 TFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFY 269
TFIDNHD + + ++ A+ LT G P I+Y
Sbjct: 322 TFIDNHDMDRF-KTSAVNNRRLEQALAFTLTSRGVPAIYY 360
>pdb|1M53|A Chain A, Crystal Structure Of Isomaltulose Synthase (Pali) From
Klebsiella Sp. Lx3
Length = 570
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 70/309 (22%), Positives = 122/309 (39%), Gaps = 70/309 (22%)
Query: 12 KYGSQADLKSLIQAFRQKGIKCLADMVINHRT----------AERKDGRGIYCIFEGGTS 61
+YG+ D SL+ +++ ++ + D+VINH + +++ + Y + G
Sbjct: 88 EYGTMEDFDSLVAEMKKRNMRLMIDVVINHTSDQHPWFIQSKSDKNNPYRDYYFWRDGKD 147
Query: 62 DDRLDWGPSFICRGDKEYSDGQGNDDTGEDF-QPAPDIDHLNPRVQKELSDWMN-WLKTE 119
+ + PSF G D + F + PD++ NP+V+++L + WL +
Sbjct: 148 NQPPNNYPSFFG-GSAWQKDAKSGQYYLHYFARQQPDLNWDNPKVREDLYAMLRFWL--D 204
Query: 120 IGFDGWRFDFVKGYA-----PSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDAN---QD 171
G G RFD V Y+ P++T +N + + +G P+ + Q+
Sbjct: 205 KGVSGMRFDTVATYSKIPGFPNLTPEQQKNFAEQYTMG-------------PNIHRYIQE 251
Query: 172 GHRGALKDWVQAAGGAV--------AAFDFTTKGILQAAVQGELWRL-KDSNGK------ 216
+R L + A G + + F + L A +L RL +DSN +
Sbjct: 252 MNRKVLSRYDVATAGEIFGVPLDRSSQFFDRRRHELNMAFMFDLIRLDRDSNERWRHKSW 311
Query: 217 -PPGFIGILPQNAVT---------FIDNHDT-------GSTQRLWPFPSDKVMLGYAYIL 259
F I+ + VT F+DNHD G + W S K + L
Sbjct: 312 SLSQFRQIISKMDVTVGKYGWNTFFLDNHDNPRAVSHFGDDRPQWREASAKALA--TITL 369
Query: 260 THPGTPCIF 268
T TP I+
Sbjct: 370 TQRATPFIY 378
>pdb|3GBD|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum
pdb|3GBE|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum In Complex With The Inhibitor
Deoxynojirimycin
Length = 558
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 4 RLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINH---------RTAERKDG--RGI 52
R Y +YG+ D LI +++ ++ + D+VINH ++ KD RG
Sbjct: 66 RDYRKIMKEYGTMEDFDRLISEMKKRNMRLMIDVVINHTSDQNEWFVKSKSSKDNPYRG- 124
Query: 53 YCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF-QPAPDIDHLNPRVQKELSD 111
Y ++ + PSF G D + N F + PD++ NP+V+++L
Sbjct: 125 YYFWKDAKEGQAPNNYPSFFG-GSAWQKDEKTNQYYLHYFAKQQPDLNWDNPKVRQDLYA 183
Query: 112 WMN-WLKTEIGFDGWRFDFVKGYA-----PSITKVYMENTSPDFAVG 152
+ WL + G G RFD V Y+ P++T+ ++N + ++ G
Sbjct: 184 MLRFWL--DKGVSGLRFDTVATYSKIPDFPNLTQQQLKNFAAEYTKG 228
>pdb|2WC7|A Chain A, Crystal Structure Of Nostoc Punctiforme Debranching
Enzyme( Npde)(Acarbose Soaked)
pdb|2WCS|A Chain A, Crystal Structure Of Debranching Enzyme From Nostoc
Punctiforme (Npde)
pdb|2WKG|A Chain A, Nostoc Punctiforme Debranching Enzyme (Npde)(Native Form)
Length = 488
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 117/297 (39%), Gaps = 66/297 (22%)
Query: 6 YDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYC---IFEGGTSD 62
Y +D G++A K L+ A Q+ IK + D V NH + RG + + E G
Sbjct: 93 YQVDPMLGGNEA-FKELLDAAHQRNIKVVLDGVFNHSS------RGFFFFHDVLENGPHS 145
Query: 63 DRLDW-----GPSFICRGD--KEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN- 114
++W P G+ Y GN + P+ +H NP V++ + +
Sbjct: 146 PWVNWFKIEGWPLSPYNGEFPANYVGWAGN-------RALPEFNHDNPEVREYIMEIAEY 198
Query: 115 WLKTEIGFDGWRFDF-VKGYAPSITKVYMENT---SPD-FAVGEKW-DS----------- 157
WLK G DGWR D + P + + + T +P+ + VGE W DS
Sbjct: 199 WLK--FGIDGWRLDVPFEIKTPGFWQEFRDRTKAINPEAYIVGEVWGDSRQWLDGTQFDG 256
Query: 158 -LSYGPDGKPDANQDGHRGALKDWVQAAG----GAVAAFDFTTKGILQAAVQGELWRLKD 212
++Y G A G R L+ VQ+ + A ++ TK +Q +Q W ++
Sbjct: 257 VMNYLFAGPTIAFAAGDRVVLEQ-VQSRDYQPYPPLFAAEYATK--IQEVLQLYPWEIQL 313
Query: 213 SNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFY 269
+ + + +HDT + V L +LT PG P I+Y
Sbjct: 314 TQ--------------LNLLASHDTARLMTIAGGDIASVELSTLLLLTFPGAPSIYY 356
>pdb|8CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltohexaose
pdb|9CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltopentaose
pdb|3CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With Its Main Product Beta-Cyclodextrin
Length = 684
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 108/272 (39%), Gaps = 38/272 (13%)
Query: 13 YGSQADLKSLIQAFRQKGIKCLADMVINHR-------TAERKDGRGIY--CIFEGGTSDD 63
+G+ AD ++LI KGIK + D NH T+ ++GR +Y GG ++D
Sbjct: 112 FGTMADFQNLITTAHAKGIKIVIDFAPNHTSPAMETDTSFAENGR-LYDNGTLVGGYTND 170
Query: 64 RLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGF 122
+ F G ++S + + ++ D +H N + K D + WL ++G
Sbjct: 171 TNGY---FHHNGGSDFSSLE--NGIYKNLYDLADFNHNNATIDKYFKDAIKLWL--DMGV 223
Query: 123 DGWRFDFVKGYAPSITKVYMENT---SPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKD 179
DG R D VK K +M + P F G W + DA+ D
Sbjct: 224 DGIRVDAVKHMPLGWQKSWMSSIYAHKPVFTFGA-W----FLGSAASDADN-------TD 271
Query: 180 WVQAAGGAVAAFDFTT--KGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT 237
+ +G ++ F F + + + + N + + Q VTFIDNHD
Sbjct: 272 FANKSGMSLLDFRFNSAVRNVFRDNTSNMYALDSMINSTATDYNQVNDQ--VTFIDNHDM 329
Query: 238 GSTQRLWPFPSDKVMLGYAYILTHPGTPCIFY 269
+ + ++ A+ LT G P I+Y
Sbjct: 330 -DRFKTSAVNNRRLEQALAFTLTSRGVPAIYY 360
>pdb|1CGU|A Chain A, Catalytic Center Of Cyclodextrin Glycosyltransferase
Derived From X-Ray Structure Analysis Combined With
Site- Directed Mutagenesis
pdb|5CGT|A Chain A, Maltotriose Complex Of Preconditioned Cyclodextrin
Glycosyltransferase Mutant
pdb|7CGT|A Chain A, Rameb Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 108/271 (39%), Gaps = 36/271 (13%)
Query: 13 YGSQADLKSLIQAFRQKGIKCLADMVINHR-------TAERKDGRGIY--CIFEGGTSDD 63
+G+ AD ++LI KGIK + D NH T+ ++GR +Y GG ++D
Sbjct: 112 FGTMADFQNLITTAHAKGIKIVIDFAPNHTSPAMETDTSFAENGR-LYDNGTLVGGYTND 170
Query: 64 RLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGF 122
+ F G ++S + + ++ D +H N + K D + WL ++G
Sbjct: 171 TNGY---FHHNGGSDFSSLE--NGIYKNLYDLADFNHNNATIDKYFKDAIKLWL--DMGV 223
Query: 123 DGWRFDFVKGYAPSITKVYMENT---SPDFAVGEKW-DSLSYGPDGKPDANQDGHRGALK 178
DG R VK K +M + P F GE + S + D AN+ G +L
Sbjct: 224 DGIRVAAVKHMPLGWQKSWMSSIYAHKPVFTFGEWFLGSAASDADNTDFANKSGM--SLL 281
Query: 179 DWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTG 238
D+ F+ + + + N + + Q VTFIDNHD
Sbjct: 282 DF---------RFNSAVRNVFRDNTSNMYALDSMINSTATDYNQVNDQ--VTFIDNHDMD 330
Query: 239 STQRLWPFPSDKVMLGYAYILTHPGTPCIFY 269
+ + ++ A+ LT G P I+Y
Sbjct: 331 RF-KTSAVNNRRLEQALAFTLTSRGVPAIYY 360
>pdb|1BF2|A Chain A, Structure Of Pseudomonas Isoamylase
Length = 750
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 19/135 (14%)
Query: 2 PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGG-- 59
P R Y + + G A+ ++++QAF GIK D+V NH EGG
Sbjct: 258 PDRRYAYNKAAGGPTAEFQAMVQAFHNAGIKVYMDVVYNHTA-------------EGGTW 304
Query: 60 TSDDRLDWGPSFICRG---DKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWL 116
TS D + RG Y GN ++ + + N Q + D + +
Sbjct: 305 TSSDPTT-ATIYSWRGLDNATYYELTSGNQYFYDNTGIGANFNTYNTVAQNLIVDSLAYW 363
Query: 117 KTEIGFDGWRFDFVK 131
+G DG+RFD
Sbjct: 364 ANTMGVDGFRFDLAS 378
>pdb|4GIN|A Chain A, Crystal Structure Of The Mutb R284c Mutant From Crystals
Soaked With The Inhibitor Deoxynojirimycin
Length = 584
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 18/157 (11%)
Query: 12 KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER---KDGRGI-------YCIFEGGTS 61
+YG+ D L+ +++G++ + D+VINH + + K R Y + G
Sbjct: 102 EYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKD 161
Query: 62 DDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEI 120
+ PSF E G + PD++ P++++EL + WL +
Sbjct: 162 GHEPNNYPSFFGGSAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLREELYAMLRFWL--DK 219
Query: 121 GFDGWRFDFVKGYA-----PSITKVYMENTSPDFAVG 152
G G RFD V Y+ P +T M+N + + G
Sbjct: 220 GVSGMRFDTVATYSKTPGFPDLTPEQMKNFAEAYTQG 256
>pdb|2PWG|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWG|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWH|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
pdb|2PWH|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
Length = 556
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 18/157 (11%)
Query: 12 KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER---KDGRGI-------YCIFEGGTS 61
+YG+ D L+ +++G++ + D+VINH + + K R Y + G
Sbjct: 74 EYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKD 133
Query: 62 DDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEI 120
+ PSF E G + PD++ P++++EL + WL +
Sbjct: 134 GHEPNNYPSFFGGSAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLREELYAMLRFWL--DK 191
Query: 121 GFDGWRFDFVKGYA-----PSITKVYMENTSPDFAVG 152
G G RFD V Y+ P +T M+N + + G
Sbjct: 192 GVSGMRFDTVATYSKTPGFPDLTPEQMKNFAEAYTQG 228
>pdb|4H2C|A Chain A, Trehalulose Synthase Mutb R284c Mutant
Length = 557
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 18/157 (11%)
Query: 12 KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER---KDGRGI-------YCIFEGGTS 61
+YG+ D L+ +++G++ + D+VINH + + K R Y + G
Sbjct: 75 EYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKD 134
Query: 62 DDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEI 120
+ PSF E G + PD++ P++++EL + WL +
Sbjct: 135 GHEPNNYPSFFGGSAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLREELYAMLRFWL--DK 192
Query: 121 GFDGWRFDFVKGYA-----PSITKVYMENTSPDFAVG 152
G G RFD V Y+ P +T M+N + + G
Sbjct: 193 GVSGMRFDTVATYSKTPGFPDLTPEQMKNFAEAYTQG 229
>pdb|4GI6|A Chain A, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI6|B Chain B, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI8|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI8|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI9|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GI9|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GIA|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
pdb|4GIA|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
Length = 557
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 18/157 (11%)
Query: 12 KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER---KDGRGI-------YCIFEGGTS 61
+YG+ D L+ +++G++ + D+VINH + + K R Y + G
Sbjct: 75 EYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKD 134
Query: 62 DDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEI 120
+ PSF E G + PD++ P++++EL + WL +
Sbjct: 135 GHEPNNYPSFFGGSAWEKDPVTGQYYLHYLGRQQPDLNWDTPKLREELYAMLRFWL--DK 192
Query: 121 GFDGWRFDFVKGYA-----PSITKVYMENTSPDFAVG 152
G G RFD V Y+ P +T M+N + + G
Sbjct: 193 GVSGMRFDTVATYSKTPGFPDLTPEQMKNFAEAYTQG 229
>pdb|2PWE|A Chain A, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
pdb|2PWE|B Chain B, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
Length = 556
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 18/157 (11%)
Query: 12 KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER---KDGRGI-------YCIFEGGTS 61
+YG+ D L+ +++G++ + D+VINH + + K R Y + G
Sbjct: 74 EYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKD 133
Query: 62 DDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEI 120
+ PSF E G + PD++ P++++EL + WL +
Sbjct: 134 GHEPNNYPSFFGGSAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLREELYAMLRFWL--DK 191
Query: 121 GFDGWRFDFVKGYA-----PSITKVYMENTSPDFAVG 152
G G RFD V Y+ P +T M+N + + G
Sbjct: 192 GVSGMRFDTVATYSKTPGFPDLTPEQMKNFAEAYTQG 228
>pdb|1ZJA|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJA|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJB|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|1ZJB|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|2PWD|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
pdb|2PWD|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
Length = 557
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 18/157 (11%)
Query: 12 KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER---KDGRGI-------YCIFEGGTS 61
+YG+ D L+ +++G++ + D+VINH + + K R Y + G
Sbjct: 75 EYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKD 134
Query: 62 DDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEI 120
+ PSF E G + PD++ P++++EL + WL +
Sbjct: 135 GHEPNNYPSFFGGSAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLREELYAMLRFWL--DK 192
Query: 121 GFDGWRFDFVKGYA-----PSITKVYMENTSPDFAVG 152
G G RFD V Y+ P +T M+N + + G
Sbjct: 193 GVSGMRFDTVATYSKTPGFPDLTPEQMKNFAEAYTQG 229
>pdb|2VNC|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VNC|B Chain B, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VR5|A Chain A, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VR5|B Chain B, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VUY|A Chain A, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
pdb|2VUY|B Chain B, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
Length = 718
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 19/134 (14%)
Query: 14 GSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFIC 73
G K ++ GI+ + D+V NH TAE + G F G +D ++
Sbjct: 264 GQVLSFKKMVNELHNAGIEVIIDVVYNH-TAE-GNHLGPTLSFRG------IDNTAYYML 315
Query: 74 RGDKE--YSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVK 131
+ D + Y D G +T ++ +PRV + + D + + TE+ DG+RFD
Sbjct: 316 QPDNKRYYLDFTGTGNT---------LNLSHPRVIQMVLDSLRYWVTEMHVDGFRFDLAA 366
Query: 132 GYAPSITKVYMENT 145
A + V M NT
Sbjct: 367 ALARELYSVNMLNT 380
>pdb|1UOK|A Chain A, Crystal Structure Of B. Cereus Oligo-1,6-Glucosidase
Length = 558
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 25/137 (18%)
Query: 11 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER---------KDG--RGIYCIFEGG 59
+++G+ D L+ ++ +K + D+V+NH + E KD R Y G
Sbjct: 73 NEFGTMEDWDELLHEMHERNMKLMMDLVVNHTSDEHNWFIESRKSKDNKYRDYYIWRPGK 132
Query: 60 TSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF-----QPAPDIDHLNPRVQKELSDWMN 114
+ +WG +F S Q ++ T E + + PD++ N +V++++ + M
Sbjct: 133 EGKEPNNWGAAFSG------SAWQYDEMTDEYYLHLFSKKQPDLNWDNEKVRQDVYEMMK 186
Query: 115 -WLKTEIGFDGWRFDFV 130
WL E G DG+R D +
Sbjct: 187 FWL--EKGIDGFRMDVI 201
>pdb|4AMC|A Chain A, Crystal Structure Of Lactobacillus Reuteri 121
N-Terminally Truncated Glucansucrase Gtfa
Length = 1049
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 89 GEDFQPAPDIDHLNPRVQKELSDWMNWL----KTEIGFDGWRFDFVKGYAPSITKVYMEN 144
G++F A DID+ NP VQ E +W+ +L D FD V+ AP + N
Sbjct: 238 GQEFLLANDIDNSNPVVQAEQLNWLYYLLNFGTITANNDQANFDSVRVDAPDNIDADLMN 297
Query: 145 TSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA 183
+ D+ + +YG D DA + H L+DW A
Sbjct: 298 IAQDYF------NAAYGMDS--DAVSNKHINILEDWNHA 328
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 23/97 (23%)
Query: 6 YDLDAS---KYGSQADLKSLIQAFRQKGIKCLADMVINH---------RTAERKDGRG-- 51
YDL S KYG+ DL++ IQA + G++ +AD V + T R D RG
Sbjct: 738 YDLGMSEPNKYGTDEDLRNAIQALHKAGLQVMADWVPDQIYNLPGKEVATVTRVDDRGNV 797
Query: 52 ---------IYCIFEGGTSDDRLDWGPSFICRGDKEY 79
+Y + G + + +G +F+ + K Y
Sbjct: 798 WKDAIINNNLYVVNTIGGGEYQKKYGGAFLDKLQKLY 834
>pdb|2WAN|A Chain A, Pullulanase From Bacillus Acidopullulyticus
Length = 921
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 27/117 (23%)
Query: 17 ADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSD-DRLDWGPSFICRG 75
+LK LIQ+ Q+ I D+V NH F+ SD D++ P + R
Sbjct: 532 TELKQLIQSLHQQRIGVNMDVVYNH-------------TFDVMVSDFDKI--VPQYYYRT 576
Query: 76 DKE--YSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 130
D Y++G G G +F +P QK + D +N+ E DG+RFD +
Sbjct: 577 DSNGNYTNGSG---XGNEFATE------HPMAQKFVLDSVNYWVNEYHVDGFRFDLM 624
>pdb|1JF5|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
pdb|1JF5|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
Length = 585
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 98/271 (36%), Gaps = 44/271 (16%)
Query: 12 KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSF 71
++G + L+ ++GIK + D V NH + R + + G DW F
Sbjct: 215 QFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRD---VLQKGEQSRYKDW---F 268
Query: 72 ICRGDKEYSDGQGNDDTGEDFQPA-PDIDHLNPRVQKELSD----WMNWLKTEIGFDGWR 126
+ N +T PA P + NP V++ L D WM E G DGWR
Sbjct: 269 FIEDFPVSKTSRTNYETAAVQVPAMPKLRTENPEVKEYLFDVARFWM-----EQGIDGWR 323
Query: 127 FDFVKGYAPSITKVY---MENTSPD-FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQ 182
D + + + +++ +PD VGE W S G D + +
Sbjct: 324 LDVANEVDHAFWREFRRLVKSLNPDALIVGEIWHDASGWLMG------DQFDSVMNYLFR 377
Query: 183 AAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAV----TFIDNHDTG 238
+V F F T I EL R + + P+ A +D+HDT
Sbjct: 378 E---SVIRF-FATGEIHAERFDAELTRAR----------MLYPEQAAQGLWNLLDSHDTE 423
Query: 239 STQRLWPFPSDKVMLGYAYILTHPGTPCIFY 269
K L + +T+ GTP I+Y
Sbjct: 424 RFLTSCGGNEAKFRLAVLFQMTYLGTPLIYY 454
>pdb|2PWF|A Chain A, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|B Chain B, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|C Chain C, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|D Chain D, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
Length = 556
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 65/157 (41%), Gaps = 18/157 (11%)
Query: 12 KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER---KDGRGI-------YCIFEGGTS 61
+YG+ D L+ +++G++ + D+VINH + + K R Y + G
Sbjct: 74 EYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKD 133
Query: 62 DDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEI 120
+ PSF E G + PD++ P++++EL + WL +
Sbjct: 134 GHEPNNYPSFFGGSAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLREELYAMLRFWL--DK 191
Query: 121 GFDGWRFDFVKGYA-----PSITKVYMENTSPDFAVG 152
G G RF V Y+ P +T M+N + + G
Sbjct: 192 GVSGMRFATVATYSKTPGFPDLTPEQMKNFAEAYTQG 228
>pdb|3EDE|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDE|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 100/280 (35%), Gaps = 46/280 (16%)
Query: 12 KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER---KDGRGIYCIFEGG----TSDDR 64
+YGS D L R++G+ + D+V++H KD I GG T R
Sbjct: 194 RYGSNEDFVRLSTEARKRGMGLIQDVVLSHIGKHHWWMKDLPTPDWINYGGKFVPTQHHR 253
Query: 65 LDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDG 124
+ + + D E N G + PD++ NP V L W G G
Sbjct: 254 VAVQDPYAAQADSE------NFTKGWFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSG 307
Query: 125 WRFDFVKGYA-----PSITKVYMENTSPDFAVGEKWDS----LSYGPDGKPDANQDGHRG 175
R D GY+ T+ M VGE+W + ++ GK AN DG+
Sbjct: 308 LRID-TYGYSDGAFLTEYTRRLMAEYPRLNMVGEEWSTRVPVVARWQRGK--ANFDGYTS 364
Query: 176 ALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGIL-------PQNA 228
L + DF L A++ L + + NG + + PQN
Sbjct: 365 HLP----------SLMDFP----LVDAMRNALSKTGEENGLNEVYETLSLDYLYPEPQNL 410
Query: 229 VTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIF 268
V F NHD D+ + +++T P P +
Sbjct: 411 VLFGGNHDMARMFSAAGEDFDRWRMNLVFLMTMPRIPQFY 450
>pdb|2ZE0|A Chain A, Alpha-glucosidase Gsj
Length = 555
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 84/205 (40%), Gaps = 42/205 (20%)
Query: 12 KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDD--RLDWGP 69
++G+ D L+ ++G+K + D+VINH + E E +S D + DW
Sbjct: 74 EFGTMDDFDELLAQAHRRGLKVILDLVINHTSDEHP------WFIESRSSRDNPKRDW-- 125
Query: 70 SFICRGDKE------------YSDGQGNDDTGEDFQ-----PAPDIDHLNPRVQKELSDW 112
+I R K+ S Q ++ TG+ + PD++ N V++ L +
Sbjct: 126 -YIWRDGKDGREPNNWESIFGGSAWQYDERTGQYYLHIFDVKQPDLNWENSEVRQALYEM 184
Query: 113 MNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDG 172
+NW + G DG+R D +I+ + + PD + L Y P NQ G
Sbjct: 185 VNWW-LDKGIDGFRID-------AISHIKKKPGLPDLPNPK---GLKYVPSFAGHMNQPG 233
Query: 173 HRGALKDWVQAAGGAVAAFDFTTKG 197
L++ + A +D T G
Sbjct: 234 IMEYLRELKEQ---TFARYDIMTVG 255
>pdb|1WZM|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
pdb|1WZM|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
Length = 585
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 98/271 (36%), Gaps = 44/271 (16%)
Query: 12 KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSF 71
++G + L+ ++GIK + D V NH + R + + G DW F
Sbjct: 215 QFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRD---VLQKGEQSRYKDW---F 268
Query: 72 ICRGDKEYSDGQGNDDTGEDFQPA-PDIDHLNPRVQKELSD----WMNWLKTEIGFDGWR 126
+ N +T PA P + NP V++ L D WM E G DGWR
Sbjct: 269 FIEDFPVSKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWM-----EQGIDGWR 323
Query: 127 FDFVKGYAPSITKVY---MENTSPD-FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQ 182
D + + + +++ +PD VGE W S G D + +
Sbjct: 324 LDVANEVDHAFWREFRRLVKSLNPDALIVGEIWHDASGWLMG------DQFDSVMNYLFR 377
Query: 183 AAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAV----TFIDNHDTG 238
+V F F T I EL R + + P+ A +D+HDT
Sbjct: 378 E---SVIRF-FATGEIHAERFDAELTRAR----------MLYPEQAAQGLWNLLDSHDTE 423
Query: 239 STQRLWPFPSDKVMLGYAYILTHPGTPCIFY 269
K L + +T+ GTP I+Y
Sbjct: 424 RFLTSCGGNEAKFRLAVLFQMTYLGTPLIYY 454
>pdb|1WZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
pdb|1WZK|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
Length = 585
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 98/271 (36%), Gaps = 44/271 (16%)
Query: 12 KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSF 71
++G + L+ ++GIK + D V NH + R + + G DW F
Sbjct: 215 QFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRD---VLQKGEQSRYKDW---F 268
Query: 72 ICRGDKEYSDGQGNDDTGEDFQPA-PDIDHLNPRVQKELSD----WMNWLKTEIGFDGWR 126
+ N +T PA P + NP V++ L D WM E G DGWR
Sbjct: 269 FIEDFPVSKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWM-----EQGIDGWR 323
Query: 127 FDFVKGYAPSITKVY---MENTSPD-FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQ 182
D + + + +++ +PD VGE W S G D + +
Sbjct: 324 LDVANEVDHAFWREFRRLVKSLNPDALIVGEIWHDASGWLMG------DQFDSVMNYLFR 377
Query: 183 AAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAV----TFIDNHDTG 238
+V F F T I EL R + + P+ A +D+HDT
Sbjct: 378 E---SVIRF-FATGEIHAERFDAELTRAR----------MLYPEQAAQGLWNLLDSHDTE 423
Query: 239 STQRLWPFPSDKVMLGYAYILTHPGTPCIFY 269
K L + +T+ GTP I+Y
Sbjct: 424 RFLTSCGGNEAKFRLAVLFQMTYLGTPLIYY 454
>pdb|1BVZ|A Chain A, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1BVZ|B Chain B, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1JI2|A Chain A, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|1JI2|B Chain B, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|3A6O|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
pdb|3A6O|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
Length = 585
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 98/271 (36%), Gaps = 44/271 (16%)
Query: 12 KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSF 71
++G + L+ ++GIK + D V NH + R + + G DW F
Sbjct: 215 QFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRD---VLQKGEQSRYKDW---F 268
Query: 72 ICRGDKEYSDGQGNDDTGEDFQPA-PDIDHLNPRVQKELSD----WMNWLKTEIGFDGWR 126
+ N +T PA P + NP V++ L D WM E G DGWR
Sbjct: 269 FIEDFPVSKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWM-----EQGIDGWR 323
Query: 127 FDFVKGYAPSITKVY---MENTSPD-FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQ 182
D + + + +++ +PD VGE W S G D + +
Sbjct: 324 LDVANEVDHAFWREFRRLVKSLNPDALIVGEIWHDASGWLMG------DQFDSVMNYLFR 377
Query: 183 AAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAV----TFIDNHDTG 238
+V F F T I EL R + + P+ A +D+HDT
Sbjct: 378 E---SVIRF-FATGEIHAERFDAELTRAR----------MLYPEQAAQGLWNLLDSHDTE 423
Query: 239 STQRLWPFPSDKVMLGYAYILTHPGTPCIFY 269
K L + +T+ GTP I+Y
Sbjct: 424 RFLTSCGGNEAKFRLAVLFQMTYLGTPLIYY 454
>pdb|1JF6|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
pdb|1JF6|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
Length = 585
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 98/271 (36%), Gaps = 44/271 (16%)
Query: 12 KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSF 71
++G + L+ ++GIK + D V NH + R + + G DW F
Sbjct: 215 QFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRD---VLQKGEQSRYKDW---F 268
Query: 72 ICRGDKEYSDGQGNDDTGEDFQPA-PDIDHLNPRVQKELSD----WMNWLKTEIGFDGWR 126
+ N +T PA P + NP V++ L D WM E G DGWR
Sbjct: 269 FIEDFPVSKTSRTNYETYAVQVPAMPKLRTENPEVKEYLFDVARFWM-----EQGIDGWR 323
Query: 127 FDFVKGYAPSITKVY---MENTSPD-FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQ 182
D + + + +++ +PD VGE W S G D + +
Sbjct: 324 LDVANEVDHAFWREFRRLVKSLNPDALIVGEIWHDASGWLMG------DQFDSVMNYLFR 377
Query: 183 AAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAV----TFIDNHDTG 238
+V F F T I EL R + + P+ A +D+HDT
Sbjct: 378 E---SVIRF-FATGEIHAERFDAELTRAR----------MLYPEQAAQGLWNLLDSHDTE 423
Query: 239 STQRLWPFPSDKVMLGYAYILTHPGTPCIFY 269
K L + +T+ GTP I+Y
Sbjct: 424 RFLTSCGGNEAKFRLAVLFQMTYLGTPLIYY 454
>pdb|1WZL|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
pdb|1WZL|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
Length = 585
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 98/271 (36%), Gaps = 44/271 (16%)
Query: 12 KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSF 71
++G + L+ ++GIK + D V NH + R + + G DW F
Sbjct: 215 QFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRD---VLQKGEQSRYKDW---F 268
Query: 72 ICRGDKEYSDGQGNDDTGEDFQPA-PDIDHLNPRVQKELSD----WMNWLKTEIGFDGWR 126
+ N +T PA P + NP V++ L D WM E G DGWR
Sbjct: 269 FIEDFPVSKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWM-----EQGIDGWR 323
Query: 127 FDFVKGYAPSITKVY---MENTSPD-FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQ 182
D + + + +++ +PD VGE W S G D + +
Sbjct: 324 LDVANEVDHAFWREFRRLVKSLNPDALIVGEIWHDASGWLMG------DQFDSVMNYLFR 377
Query: 183 AAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAV----TFIDNHDTG 238
+V F F T I EL R + + P+ A +D+HDT
Sbjct: 378 E---SVIRF-FATGEIHAERFDAELTRAR----------MLYPEQAAQGLWNLLDSHDTE 423
Query: 239 STQRLWPFPSDKVMLGYAYILTHPGTPCIFY 269
K L + +T+ GTP I+Y
Sbjct: 424 RFLTSCGGNEAKFRLAVLFQMTYLGTPLIYY 454
>pdb|3FAW|A Chain A, Crystal Structure Of The Group B Streptococcus Pullulanase
Sap
pdb|3FAX|A Chain A, The Crystal Structure Of Gbs Pullulanase Sap In Complex
With Maltotetraose
Length = 877
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 110/283 (38%), Gaps = 67/283 (23%)
Query: 17 ADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGD 76
A+LK LI ++G+ + D+V NH TA+ +FE D P++ +
Sbjct: 370 AELKQLIHDIHKRGMGVILDVVYNH-TAKT-------YLFE--------DIEPNYYHFMN 413
Query: 77 KEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY-AP 135
+ DG + G + + ++ L D + +L +E DG+RFD + + A
Sbjct: 414 E---DGSPRESFG-----GGRLGTTHAMSRRVLVDSIKYLTSEFKVDGFRFDMMGDHDAA 465
Query: 136 SITKVYMENTSPD---FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFD 192
+I Y E + + +GE W + G GKP + A +DW+++ V F
Sbjct: 466 AIELAYKEAKAINPNMIMIGEGWRTFQ-GDQGKP------VKPADQDWMKST-DTVGVFS 517
Query: 193 FTTKGILQA----------------AVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHD 236
+ L++ ++QG +K +P F P + V +I HD
Sbjct: 518 DDIRNSLKSGFPNEGTPAFITGGPQSLQGIFKNIK---AQPGNFEADSPGDVVQYIAAHD 574
Query: 237 TGSTQRLWPFPSDK------------VMLGYAYILTHPGTPCI 267
+ + +K + LG ILT GT I
Sbjct: 575 NLTLHDVIAKSINKDPKVAEEDIHRRLRLGNVMILTSQGTAFI 617
>pdb|2ZIC|A Chain A, Crystal Structure Of Streptococcus Mutans Dextran
Glucosidase
Length = 543
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 20/137 (14%)
Query: 6 YDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRL 65
Y+ A +G+ AD+ +L+ + +GIK + D+V+NH + E E D
Sbjct: 68 YEAIADIFGNMADMDNLLTQAKMRGIKIIMDLVVNHTSDEHA------WFIEAREHPDSS 121
Query: 66 DWGPSFICRGDKEYSDGQGN-----DDTGEDF------QPAPDIDHLNPRVQKELSDWMN 114
+ C + G DD + + + PD++ N +++++ D MN
Sbjct: 122 ERDYYIWCDQPNDLESIFGGSAWQYDDKSDQYYLHFFSKKQPDLNWENANLRQKIYDMMN 181
Query: 115 -WLKTEIGFDGWRFDFV 130
W+ IG G+R D +
Sbjct: 182 FWIDKGIG--GFRMDVI 196
>pdb|2ZID|A Chain A, Crystal Structure Of Dextran Glucosidase E236q Complex
With Isomaltotriose
Length = 543
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 20/137 (14%)
Query: 6 YDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRL 65
Y+ A +G+ AD+ +L+ + +GIK + D+V+NH + E E D
Sbjct: 68 YEAIADIFGNMADMDNLLTQAKMRGIKIIMDLVVNHTSDEHA------WFIEAREHPDSS 121
Query: 66 DWGPSFICRGDKEYSDGQGN-----DDTGEDF------QPAPDIDHLNPRVQKELSDWMN 114
+ C + G DD + + + PD++ N +++++ D MN
Sbjct: 122 ERDYYIWCDQPNDLESIFGGSAWQYDDKSDQYYLHFFSKKQPDLNWENANLRQKIYDMMN 181
Query: 115 -WLKTEIGFDGWRFDFV 130
W+ IG G+R D +
Sbjct: 182 FWIDKGIG--GFRMDVI 196
>pdb|3EDD|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDD|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 100/280 (35%), Gaps = 46/280 (16%)
Query: 12 KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER---KDGRGIYCIFEGG----TSDDR 64
+YGS D L R++G+ + D+V++H KD I GG T R
Sbjct: 194 RYGSNEDFVRLSTEARKRGMGLIQDVVLSHIGKHHWWMKDLPTPDWINYGGKFVPTQHHR 253
Query: 65 LDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDG 124
+ + + D E N G + PD++ NP V L W G G
Sbjct: 254 VAVQDPYAAQADSE------NFTKGWFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSG 307
Query: 125 WRFDFVKGYA-----PSITKVYMENTSPDFAVGEKWDS----LSYGPDGKPDANQDGHRG 175
R D GY+ T+ M VG++W + ++ GK AN DG+
Sbjct: 308 LRID-TYGYSDGAFLTEYTRRLMAEYPRLNMVGQEWSTRVPVVARWQRGK--ANFDGYTS 364
Query: 176 ALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGIL-------PQNA 228
L + DF L A++ L + + NG + + PQN
Sbjct: 365 HLP----------SLMDFP----LVDAMRNALSKTGEENGLNEVYETLSLDYLYPEPQNL 410
Query: 229 VTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIF 268
V F NHD D+ + +++T P P +
Sbjct: 411 VLFGGNHDMARMFSAAGEDFDRWRMNLVFLMTMPRIPQFY 450
>pdb|3EDF|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDF|B Chain B, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDJ|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDJ|B Chain B, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDK|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDK|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 100/280 (35%), Gaps = 46/280 (16%)
Query: 12 KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER---KDGRGIYCIFEGG----TSDDR 64
+YGS D L R++G+ + D+V++H KD I GG T R
Sbjct: 194 RYGSNEDFVRLSTEARKRGMGLIQDVVLSHIGKHHWWMKDLPTPDWINYGGKFVPTQHHR 253
Query: 65 LDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDG 124
+ + + D E N G + PD++ NP V L W G G
Sbjct: 254 VAVQDPYAAQADSE------NFTKGWFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSG 307
Query: 125 WRFDFVKGYA-----PSITKVYMENTSPDFAVGEKWDS----LSYGPDGKPDANQDGHRG 175
R D GY+ T+ M VG++W + ++ GK AN DG+
Sbjct: 308 LRID-TYGYSDGAFLTEYTRRLMAEYPRLNMVGQEWSTRVPVVARWQRGK--ANFDGYTS 364
Query: 176 ALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGIL-------PQNA 228
L + DF L A++ L + + NG + + PQN
Sbjct: 365 HLP----------SLMDFP----LVDAMRNALSKTGEENGLNEVYETLSLDYLYPEPQNL 410
Query: 229 VTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIF 268
V F NHD D+ + +++T P P +
Sbjct: 411 VLFGGNHDMARMFSAAGEDFDRWRMNLVFLMTMPRIPQFY 450
>pdb|2AAA|A Chain A, Calcium Binding In Alpha-Amylases: An X-Ray Diffraction
Study At 2.1 Angstroms Resolution Of Two Enzymes From
Aspergillus
Length = 484
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 59/157 (37%), Gaps = 19/157 (12%)
Query: 4 RLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDD 63
++YD++ S +G+ +LKSL A +G+ + D+V +H Y +F+ S
Sbjct: 86 KIYDVN-SNFGTADNLKSLSDALHARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSS 144
Query: 64 RL-------DWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWL 116
DW + E G+ PD+D V+ DW+ L
Sbjct: 145 YFHPYCLITDWDNLTMVEDCWE----------GDTIVSLPDLDTTETAVRTIWYDWVADL 194
Query: 117 KTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGE 153
+ DG R D V P Y S + VGE
Sbjct: 195 VSNYSVDGLRIDSVLEVQPDFFPGY-NKASGVYCVGE 230
>pdb|1TMQ|A Chain A, Structure Of Tenebrio Molitor Larval Alpha-Amylase In
Complex With Ragi Bifunctional Inhibitor
pdb|1CLV|A Chain A, Yellow Meal Worm Alpha-Amylase In Complex With The
Amaranth Alpha-Amylase Inhibitor
pdb|1JAE|A Chain A, Structure Of Tenebrio Molitor Larval Alpha-Amylase
Length = 471
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 107/264 (40%), Gaps = 28/264 (10%)
Query: 11 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSD-DRLDWGP 69
++ G ++ + + G++ D VINH T G G ++D D +++
Sbjct: 69 TRSGDESAFTDMTRRCNDAGVRIYVDAVINHMTGMNGVGT------SGSSADHDGMNYPA 122
Query: 70 SFICRGD----KEYSDGQGNDDTGE-DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDG 124
GD E ++ Q D+ + D++ + V+ L D+MN + ++G G
Sbjct: 123 VPYGSGDFHSPCEVNNYQDADNVRNCELVGLRDLNQGSDYVRGVLIDYMNHM-IDLGVAG 181
Query: 125 WRFDFVKGYAP---SITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWV 181
+R D K +P S+ ++N + D+ + Y + + G A+
Sbjct: 182 FRVDAAKHMSPGDLSVIFSGLKNLNTDYGFADGARPFIY----QEVIDLGGE--AISKNE 235
Query: 182 QAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHD---TG 238
G V F F L A QG +LK+ P + + +AV F+DNHD TG
Sbjct: 236 YTGFGCVLEFQFGVS--LGNAFQGGN-QLKNLANWGPEWGLLEGLDAVVFVDNHDNQRTG 292
Query: 239 STQRLWPFPSDKVMLGYAYILTHP 262
+Q L + A++L HP
Sbjct: 293 GSQILTYKNPKPYKMAIAFMLAHP 316
>pdb|4AEE|A Chain A, Crystal Structure Of Maltogenic Amylase From S.Marinus
pdb|4AEE|B Chain B, Crystal Structure Of Maltogenic Amylase From S.Marinus
Length = 696
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 103/284 (36%), Gaps = 52/284 (18%)
Query: 14 GSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSD-----DRLDWG 68
G+ D + L+Q + IK + D+ ++H + + + EG S L
Sbjct: 309 GTMEDFEKLVQVLHSRKIKIVLDITMHHTNP--CNELFVKALREGENSPYWEMFSFLSPP 366
Query: 69 PSFICRGDKEYSDGQ--------------GNDDTGEDFQP---APDIDHLNPRVQKELSD 111
P I +Y DG+ N E F +H NPR D
Sbjct: 367 PKEIVELMLKYIDGEECRSRELYKLDYFRNNKPFYEAFFNIWLMAKFNHDNPRTVDYFID 426
Query: 112 WMN-WLKTEIGFDGWRFDFVKGYAPSITKVYME---NTSPDFAV-GEKWDSLSYGPDGKP 166
W+ G DG+R D G S K Y E NT PDF V GE ++ P
Sbjct: 427 ITKFWIDK--GIDGFRIDVAMGIHYSWMKQYYEYIKNTYPDFLVLGELAEN--------P 476
Query: 167 DANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQ 226
D A+ +++ A + + + + + R+ + P + +
Sbjct: 477 RIYMDYFDSAMNYYLRKAILELLIYK-------RIDLNEFISRINNVYAYIPHYKALSLY 529
Query: 227 NAVTFIDNHDTGSTQRLWPFPSDKVM-LGYAYILTHPGTPCIFY 269
N + +HD + + ++K++ L Y I PG+P I+Y
Sbjct: 530 NM---LGSHDVPRIKSM--VQNNKLLKLMYVLIFALPGSPVIYY 568
>pdb|4AIE|A Chain A, Structure Of Glucan-1,6-Alpha-Glucosidase From
Lactobacillus Acidophilus Ncfm
Length = 549
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 12 KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERK 47
+YG+ AD+ LI ++ IK + D+V+NH + + K
Sbjct: 75 QYGTMADMDELISKAKEHHIKIVMDLVVNHTSDQHK 110
>pdb|1VIW|A Chain A, Tenebrio Molitor Alpha-Amylase-Inhibitor Complex
Length = 471
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 107/264 (40%), Gaps = 28/264 (10%)
Query: 11 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSD-DRLDWGP 69
++ G+++ + + G++ D VINH T G G ++D D +++
Sbjct: 69 TRSGNESAFTDMTRRCNDAGVRIYVDAVINHMTGMNGVGT------SGSSADHDGMNYPA 122
Query: 70 SFICRGD----KEYSDGQGNDDTGE-DFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDG 124
GD E ++ Q D+ + D++ + V+ L D+MN + ++G G
Sbjct: 123 VPYGSGDFHSPCEVNNYQDADNVRNCELVGLRDLNAGSDYVRGVLIDYMNHM-IDLGVAG 181
Query: 125 WRFDFVKGYAPSITKVY---MENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWV 181
+R D K +P V ++N + D+ + Y + + G A+
Sbjct: 182 FRVDAAKHMSPGDLSVIFDGLKNLNTDYGFADGARPFIY----QEVIDLGGE--AISKNE 235
Query: 182 QAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHD---TG 238
G V F F L A QG +LK+ P + + +AV F+DNHD TG
Sbjct: 236 YTGFGCVLEFQFGVS--LGNAFQGGN-QLKNLANWGPEWGLLEGLDAVVFVDNHDNQRTG 292
Query: 239 STQRLWPFPSDKVMLGYAYILTHP 262
+Q L + A++L HP
Sbjct: 293 GSQILTYKNPKPYKMAIAFMLAHP 316
>pdb|1IZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase 1 Mutant
Enzyme W398v
Length = 637
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 30/139 (21%)
Query: 136 SITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTT 195
+I Y+ N +P A G +WD+ + N DG + +W+ D+
Sbjct: 392 AIIGEYVGNANPWTAQGNQWDAAT---------NFDGFTQPVSEWITGK-------DYQN 435
Query: 196 KGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHD-----TGSTQRLWPFPSDK 250
+ Q + W L+ + P + Q+ + F+ NHD T S LW K
Sbjct: 436 NSASISTTQFDSW-LRGTRANYPTNV---QQSMMNFLSNHDITRFATRSGGDLW-----K 486
Query: 251 VMLGYAYILTHPGTPCIFY 269
L + +T+ GTP I+Y
Sbjct: 487 TYLALIFQMTYVGTPTIYY 505
>pdb|1JL8|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JL8|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JIB|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1JIB|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1VB9|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|1VB9|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|2D2O|A Chain A, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
pdb|2D2O|B Chain B, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
Length = 585
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 98/271 (36%), Gaps = 44/271 (16%)
Query: 12 KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSF 71
++G + L+ ++GIK + D V NH + R + + G DW F
Sbjct: 215 QFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRD---VLQKGEQSRYKDW---F 268
Query: 72 ICRGDKEYSDGQGNDDTGEDFQPA-PDIDHLNPRVQKELSD----WMNWLKTEIGFDGWR 126
+ N +T PA P + NP V++ L D WM E G DGWR
Sbjct: 269 FIEDFPVSKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWM-----EQGIDGWR 323
Query: 127 FDFVKGYAPSITKVY---MENTSPD-FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQ 182
+ + + + +++ +PD VGE W S G D + +
Sbjct: 324 LNVANEVDHAFWREFRRLVKSLNPDALIVGEIWHDASGWLMG------DQFDSVMNYLFR 377
Query: 183 AAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAV----TFIDNHDTG 238
+V F F T I EL R + + P+ A +D+HDT
Sbjct: 378 E---SVIRF-FATGEIHAERFDAELTRAR----------MLYPEQAAQGLWNLLDSHDTE 423
Query: 239 STQRLWPFPSDKVMLGYAYILTHPGTPCIFY 269
K L + +T+ GTP I+Y
Sbjct: 424 RFLTSCGGNEAKFRLAVLFQMTYLGTPLIYY 454
>pdb|1A47|A Chain A, Cgtase From Thermoanaerobacterium Thermosulfurigenes Em1
In Complex With A Maltohexaose Inhibitor
pdb|1CIU|A Chain A, Thermostable Cgtase From Thermoanaerobacterium
Thermosulfurigenes Em1 At Ph 8.0
Length = 683
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 106/276 (38%), Gaps = 47/276 (17%)
Query: 13 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAER-------KDGRGIY--CIFEGGTSDD 63
+GS D ++LI IK + D NH + ++GR +Y GG ++D
Sbjct: 113 FGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGR-LYDNGTLLGGYTND 171
Query: 64 RLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGF 122
+ F G ++S + D + D++ N + L + WL ++G
Sbjct: 172 TNGY---FHHYGGTDFSSYE--DGIYRNLFDLADLNQQNSTIDSYLKSAIKVWL--DMGI 224
Query: 123 DGWRFDFVKGYAPSITKVYMENT---SPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKD 179
DG R D VK K +M++ P F GE W + + D N
Sbjct: 225 DGIRLDAVKHMPFGWQKNFMDSILSYRPVFTFGE-W----FLGTNEIDVNN-------TY 272
Query: 180 WVQAAGGAVAAFDFTTKGILQAAVQGE-----LWRLKDSNGKPPGFIGILPQNAVTFIDN 234
+ +G ++ F F+ K + Q L + S FI + VTFIDN
Sbjct: 273 FANESGMSLLDFRFSQK-VRQVFRDNTDTMYGLDSMIQSTASDYNFI----NDMVTFIDN 327
Query: 235 HDTGSTQRLWPFPSDK-VMLGYAYILTHPGTPCIFY 269
HD R + S + V A+ LT G P I+Y
Sbjct: 328 HD---MDRFYNGGSTRPVEQALAFTLTSRGVPAIYY 360
>pdb|3BMV|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
pdb|3BMW|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
Complexed With A Maltoheptaose Inhibitor
Length = 683
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 109/281 (38%), Gaps = 57/281 (20%)
Query: 13 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAER-------KDGRGIY--CIFEGGTSDD 63
+GS D ++LI IK + D NH + ++GR +Y GG ++D
Sbjct: 113 FGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGR-LYDNGTLLGGYTND 171
Query: 64 RLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGF 122
+ F G ++S + D + D++ N + L + WL ++G
Sbjct: 172 TNGY---FHHYGGTDFSSYE--DGIYRNLFDLADLNQQNSTIDSYLKSAIKVWL--DMGI 224
Query: 123 DGWRFDFVKGYAPSITKVYMENT---SPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKD 179
DG R D VK K +M++ P F GE W + + D N
Sbjct: 225 DGIRLDAVKHMPFGWQKNFMDSILSYRPVFTFGE-W----FLGTNEIDVNN-------TY 272
Query: 180 WVQAAGGAVAAFDFTTKGILQAAVQGE-----LWRLKDSNGKPPGFIGILPQNAVTFIDN 234
+ +G ++ F F+ K + Q L + S FI + VTFIDN
Sbjct: 273 FANESGMSLLDFRFSQK-VRQVFRDNTDTMYGLDSMIQSTASDYNFI----NDMVTFIDN 327
Query: 235 HDT------GSTQRLWPFPSDKVMLGYAYILTHPGTPCIFY 269
HD GST+ P ++ + A+ LT G P I+Y
Sbjct: 328 HDMDRFYNGGSTR-----PVEQAL---AFTLTSRGVPAIYY 360
>pdb|1BPL|A Chain A, Glycosyltransferase
Length = 189
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 11 SKYGSQADLKSLIQAFRQKGIKCLADMVINHR 42
+KYG++ +L+S I++ + I D+VINH+
Sbjct: 75 TKYGTKGELQSAIKSLHSRDINVYGDVVINHK 106
>pdb|1VFM|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFM|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFO|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFO|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFU|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
pdb|1VFU|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
Length = 585
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 62/157 (39%), Gaps = 20/157 (12%)
Query: 12 KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSF 71
++G + L+ ++GIK + D V NH + R + + G DW F
Sbjct: 215 QFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRD---VLQKGEQSRYKDW---F 268
Query: 72 ICRGDKEYSDGQGNDDTGEDFQPA-PDIDHLNPRVQKELSD----WMNWLKTEIGFDGWR 126
+ N +T PA P + NP V++ L D WM E G DGWR
Sbjct: 269 FIEDFPVSKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWM-----EQGIDGWR 323
Query: 127 FDFVKGYAPSITKVY---MENTSPD-FAVGEKWDSLS 159
+ + + + +++ +PD VGE W S
Sbjct: 324 LNVANEVDHAFWREFRRLVKSLNPDALIVGEIWHDAS 360
>pdb|1G1Y|A Chain A, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
pdb|1G1Y|B Chain B, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
Length = 585
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 97/271 (35%), Gaps = 44/271 (16%)
Query: 12 KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSF 71
++G + L+ ++GIK + D V NH + R + + G DW F
Sbjct: 215 QFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRD---VLQKGEQSRYKDW---F 268
Query: 72 ICRGDKEYSDGQGNDDTGEDFQPA-PDIDHLNPRVQKELSD----WMNWLKTEIGFDGWR 126
+ N +T PA P + NP V++ L D WM E G DGWR
Sbjct: 269 FIEDFPVSKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWM-----EQGIDGWR 323
Query: 127 FDFVKGYAPSITKVY---MENTSPD-FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQ 182
D + + + +++ +PD VG W S G D + +
Sbjct: 324 LDVANEVDHAFWREFRRLVKSLNPDALIVGAIWHDASGWLMG------DQFDSVMNYLFR 377
Query: 183 AAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAV----TFIDNHDTG 238
+V F F T I EL R + + P+ A +D+HDT
Sbjct: 378 E---SVIRF-FATGEIHAERFDAELTRAR----------MLYPEQAAQGLWNLLDSHDTE 423
Query: 239 STQRLWPFPSDKVMLGYAYILTHPGTPCIFY 269
K L + +T+ GTP I+Y
Sbjct: 424 RFLTSCGGNEAKFRLAVLFQMTYLGTPLIYY 454
>pdb|1UH2|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-AmylaseMALTO-Hexaose
Complex
pdb|1UH4|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase 1MALTO-
Tridecaose Complex
pdb|2D0G|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 1 (Tvai) Mutant D356nE396Q COMPLEXED WITH
P5, A Pullulan Model Oligosaccharide
pdb|2D0H|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 1 (Tvai) Mutant D356nE396Q COMPLEXED WITH
P2, A Pullulan Model Oligosaccharide
Length = 637
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 55/139 (39%), Gaps = 30/139 (21%)
Query: 136 SITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTT 195
+I Y N +P A G +WD+ + N DG + +W+ D+
Sbjct: 392 AIIGQYWGNANPWTAQGNQWDAAT---------NFDGFTQPVSEWITGK-------DYQN 435
Query: 196 KGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHD-----TGSTQRLWPFPSDK 250
+ Q + W L+ + P + Q+ + F+ NHD T S LW K
Sbjct: 436 NSASISTTQFDSW-LRGTRANYPTNV---QQSMMNFLSNHDITRFATRSGGDLW-----K 486
Query: 251 VMLGYAYILTHPGTPCIFY 269
L + +T+ GTP I+Y
Sbjct: 487 TYLALIFQMTYVGTPTIYY 505
>pdb|1JI1|A Chain A, Crystal Structure Analysis Of Thermoactinomyces Vulgaris
R- 47 Alpha-amylase 1
pdb|1JI1|B Chain B, Crystal Structure Analysis Of Thermoactinomyces Vulgaris
R- 47 Alpha-amylase 1
pdb|1UH3|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-AmylaseACARBOSE
Complex
Length = 637
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 55/139 (39%), Gaps = 30/139 (21%)
Query: 136 SITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTT 195
+I Y N +P A G +WD+ + N DG + +W+ D+
Sbjct: 392 AIIGEYWGNANPWTAQGNQWDAAT---------NFDGFTQPVSEWITGK-------DYQN 435
Query: 196 KGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHD-----TGSTQRLWPFPSDK 250
+ Q + W L+ + P + Q+ + F+ NHD T S LW K
Sbjct: 436 NSASISTTQFDSW-LRGTRANYPTNV---QQSMMNFLSNHDITRFATRSGGDLW-----K 486
Query: 251 VMLGYAYILTHPGTPCIFY 269
L + +T+ GTP I+Y
Sbjct: 487 TYLALIFQMTYVGTPTIYY 505
>pdb|1IZJ|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase 1 Mutant
Enzyme F313a
Length = 637
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 55/139 (39%), Gaps = 30/139 (21%)
Query: 136 SITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTT 195
+I Y N +P A G +WD+ + N DG + +W+ D+
Sbjct: 392 AIIGEYWGNANPWTAQGNQWDAAT---------NFDGFTQPVSEWITGK-------DYQN 435
Query: 196 KGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHD-----TGSTQRLWPFPSDK 250
+ Q + W L+ + P + Q+ + F+ NHD T S LW K
Sbjct: 436 NSASISTTQFDSW-LRGTRANYPTNV---QQSMMNFLSNHDITRFATRSGGDLW-----K 486
Query: 251 VMLGYAYILTHPGTPCIFY 269
L + +T+ GTP I+Y
Sbjct: 487 TYLALIFQMTYVGTPTIYY 505
>pdb|2D0F|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 1 (Tvai) Mutant D356n Complexed With P2,
A Pullulan Model Oligosaccharide
Length = 637
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 55/139 (39%), Gaps = 30/139 (21%)
Query: 136 SITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTT 195
+I Y N +P A G +WD+ + N DG + +W+ D+
Sbjct: 392 AIIGEYWGNANPWTAQGNQWDAAT---------NFDGFTQPVSEWITGK-------DYQN 435
Query: 196 KGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHD-----TGSTQRLWPFPSDK 250
+ Q + W L+ + P + Q+ + F+ NHD T S LW K
Sbjct: 436 NSASISTTQFDSW-LRGTRANYPTNV---QQSMMNFLSNHDITRFATRSGGDLW-----K 486
Query: 251 VMLGYAYILTHPGTPCIFY 269
L + +T+ GTP I+Y
Sbjct: 487 TYLALIFQMTYVGTPTIYY 505
>pdb|3AMK|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 702
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 21/154 (13%)
Query: 10 ASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGP 69
+S+ G+ DLK L+ G++ L D+V +H + DG Y + G + +
Sbjct: 244 SSRSGTPEDLKYLVDKAHSLGLRVLMDVVHSHASNNVTDGLNGYDV--GQNTHE------ 295
Query: 70 SFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDF 129
S+ GD+ Y + ++ N V + L + + E FDG+RFD
Sbjct: 296 SYFHTGDRGY----------HKLWDSRLFNYANWEVLRFLLSNLRYWMDEFMFDGFRFDG 345
Query: 130 VKG---YAPSITKVYMENTSPDFAVGEKWDSLSY 160
V + I K + N F++ D++ Y
Sbjct: 346 VTSMLYHHHGINKGFTGNYKEYFSLDTDVDAIVY 379
>pdb|3AML|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 755
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 21/154 (13%)
Query: 10 ASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGP 69
+S+ G+ DLK L+ G++ L D+V +H + DG Y + G + +
Sbjct: 244 SSRSGTPEDLKYLVDKAHSLGLRVLMDVVHSHASNNVTDGLNGYDV--GQNTHE------ 295
Query: 70 SFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDF 129
S+ GD+ Y + ++ N V + L + + E FDG+RFD
Sbjct: 296 SYFHTGDRGY----------HKLWDSRLFNYANWEVLRFLLSNLRYWMDEFMFDGFRFDG 345
Query: 130 VKG---YAPSITKVYMENTSPDFAVGEKWDSLSY 160
V + I K + N F++ D++ Y
Sbjct: 346 VTSMLYHHHGINKGFTGNYKEYFSLDTDVDAIVY 379
>pdb|2YA0|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 714
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 107/282 (37%), Gaps = 63/282 (22%)
Query: 17 ADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGD 76
A+ K+LI ++G+ + D+V NH TA+ +FE D P++
Sbjct: 255 AEFKNLINEIHKRGMGAILDVVYNH-TAK-------VDLFE--------DLEPNYY---- 294
Query: 77 KEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY-AP 135
+ D G T H+ R+ L D + +L DG+RFD + + A
Sbjct: 295 -HFMDADGTPRTSFGGGRLGTTHHMTKRL---LIDSIKYLVDTYKVDGFRFDMMGDHDAA 350
Query: 136 SITKVY--MENTSPDF-AVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFD 192
SI + Y +P+ +GE W + + G + P + A +DW++ VA F
Sbjct: 351 SIEEAYKAARALNPNLIMLGEGWRTYA-GDENMPT------KAADQDWMKHT-DTVAVFS 402
Query: 193 FTTKGILQAAVQGE-------------LWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGS 239
+ L++ E K+ +P F P + + +I HD +
Sbjct: 403 DDIRNNLKSGYPNEGQPAFITGGKRDVNTIFKNLIAQPTNFEADSPGDVIQYIAAHDNLT 462
Query: 240 -----TQRLWPFPSD---------KVMLGYAYILTHPGTPCI 267
Q + PS ++ LG +LT GTP I
Sbjct: 463 LFDIIAQSIKKDPSKAENYAEIHRRLRLGNLMVLTAQGTPFI 504
>pdb|3AXH|A Chain A, Crystal Structure Of Isomaltase In Complex With Isomaltose
pdb|3AXI|A Chain A, Crystal Structure Of Isomaltase In Complex With Maltose
Length = 589
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 13 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAERK 47
YG+ D +LI+ + G+K + D+VINH ++E +
Sbjct: 84 YGTNEDCFALIEKTHKLGMKFITDLVINHCSSEHE 118
>pdb|3A47|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3A4A|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3AJ7|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
Length = 589
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 13 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAERK 47
YG+ D +LI+ + G+K + D+VINH ++E +
Sbjct: 84 YGTNEDCFALIEKTHKLGMKFITDLVINHCSSEHE 118
>pdb|3HZ3|A Chain A, Lactobacillus Reuteri N-Terminally Truncated Glucansucrase
Gtf180(D1025n)-Sucrose Complex
Length = 1039
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 23/102 (22%)
Query: 89 GEDFQPAPDIDHLNPRVQKELSDWMNWLKT---------EIGFDGWRFDFVKGYAPSITK 139
G +F A DID+ NP VQ E +W+ +L E FDG R + V
Sbjct: 238 GAEFLLANDIDNSNPVVQAEELNWLYYLMNFGTITGNNPEANFDGIRVNAV--------- 288
Query: 140 VYMENTSPD-FAVGEKWDSLSYGPDGKPDANQDGHRGALKDW 180
+N D ++ + + +Y + + DA+ + H L+DW
Sbjct: 289 ---DNVDVDLLSIARDYFNAAYNME-QSDASANKHINILEDW 326
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 6 YDLDAS---KYGSQADLKSLIQAFRQKGIKCLADMV 38
YDL S KYGS DL++ +QA + G++ +AD V
Sbjct: 732 YDLGMSTPNKYGSDEDLRNALQALHKAGLQAIADWV 767
>pdb|3DC0|A Chain A, Crystal Structure Of Native Alpha-Amylase From Bacillus
Sp. Kr-8104
Length = 422
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 106/286 (37%), Gaps = 70/286 (24%)
Query: 6 YDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRL 65
Y + GS+ + K + A + G+K + D VINH T++ I S
Sbjct: 64 YQIGNRYLGSEEEFKEMCAAAEEYGVKVIVDAVINHTTSDYA------AISNEIKSISNW 117
Query: 66 DWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGW 125
G + I K +SD D T D + N +VQ L ++ + G DG+
Sbjct: 118 THGNTQI----KNWSDRW--DVTQNSLLGLYDWNTQNTQVQSYLKRFLERALND-GADGF 170
Query: 126 RFDFVKG------------YAPSITKVYMENTSPDFAVGEKW-DSLS----YGPDGKPDA 168
R+D K + P+IT NTS +F GE DS S Y A
Sbjct: 171 RYDAAKHIELPDDGNYGSQFWPNIT-----NTSAEFQYGEILQDSASRDAAYANYMNVTA 225
Query: 169 NQDGH--RGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQ 226
+ GH R ALK+ + + I A +
Sbjct: 226 SNYGHSIRSALKN-----------RNLSVSNISHYASD------------------VSAD 256
Query: 227 NAVTFIDNHDTGST---QRLWPFPSDKVMLGYAYILTHPGTPCIFY 269
VT++++HDT + + W D + LG+A I + G+ +F+
Sbjct: 257 KLVTWVESHDTYANDDEESTW-MSDDDIRLGWAVIASRSGSTPLFF 301
>pdb|2YA1|A Chain A, Product Complex Of A Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 1014
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 107/282 (37%), Gaps = 63/282 (22%)
Query: 17 ADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGD 76
A+ K+LI ++G+ + D+V NH TA+ +FE D P++
Sbjct: 562 AEFKNLINEIHKRGMGAILDVVYNH-TAK-------VDLFE--------DLEPNYY---- 601
Query: 77 KEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY-AP 135
+ D G T H+ R+ L D + +L DG+RFD + + A
Sbjct: 602 -HFMDADGTPRTSFGGGRLGTTHHMTKRL---LIDSIKYLVDTYKVDGFRFDMMGDHDAA 657
Query: 136 SITKVY--MENTSPDF-AVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFD 192
SI + Y +P+ +GE W + + G + P + A +DW++ VA F
Sbjct: 658 SIEEAYKAARALNPNLIMLGEGWRTYA-GDENMPT------KAADQDWMKHT-DTVAVFS 709
Query: 193 FTTKGILQAAVQGE-------------LWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGS 239
+ L++ E K+ +P F P + + +I HD +
Sbjct: 710 DDIRNNLKSGYPNEGQPAFITGGKRDVNTIFKNLIAQPTNFEADSPGDVIQYIAAHDNLT 769
Query: 240 -----TQRLWPFPSD---------KVMLGYAYILTHPGTPCI 267
Q + PS ++ LG +LT GTP I
Sbjct: 770 LFDIIAQSIKKDPSKAENYAEIHRRLRLGNLMVLTAQGTPFI 811
>pdb|2YA2|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua In Complex With An
Inhibitor
Length = 708
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 107/282 (37%), Gaps = 63/282 (22%)
Query: 17 ADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGD 76
A+ K+LI ++G+ + D+V NH TA+ +FE D P++
Sbjct: 256 AEFKNLINEIHKRGMGAILDVVYNH-TAK-------VDLFE--------DLEPNYY---- 295
Query: 77 KEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY-AP 135
+ D G T H+ R+ L D + +L DG+RFD + + A
Sbjct: 296 -HFMDADGTPRTSFGGGRLGTTHHMTKRL---LIDSIKYLVDTYKVDGFRFDMMGDHDAA 351
Query: 136 SITKVY--MENTSPDF-AVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFD 192
SI + Y +P+ +GE W + + G + P + A +DW++ VA F
Sbjct: 352 SIEEAYKAARALNPNLIMLGEGWRTYA-GDENMPT------KAADQDWMKHT-DTVAVFS 403
Query: 193 FTTKGILQAAVQGE-------------LWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGS 239
+ L++ E K+ +P F P + + +I HD +
Sbjct: 404 DDIRNNLKSGYPNEGQPAFITGGKRDVNTIFKNLIAQPTNFEADSPGDVIQYIAAHDDLT 463
Query: 240 -----TQRLWPFPSD---------KVMLGYAYILTHPGTPCI 267
Q + PS ++ LG +LT GTP I
Sbjct: 464 LFDIIAQSIKKDPSKAENYAEIHRRLRLGNLMVLTAQGTPFI 505
>pdb|2E8Y|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Y|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Z|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E8Z|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E9B|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
pdb|2E9B|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
Length = 718
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 27/164 (16%)
Query: 16 QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRG 75
+ +LK +I Q G++ + D+V NH +R++ FE P + R
Sbjct: 315 KTELKQMINTLHQHGLRVILDVVFNH-VYKRENSP-----FEKTV--------PGYFFRH 360
Query: 76 DKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP 135
D+ G+ ++ TG DI +K ++D + + E DG+RFD + G
Sbjct: 361 DE---CGKPSNGTG----VGNDIASERRMARKFIADCVVYWLEEYNVDGFRFDLL-GILD 412
Query: 136 SITKVYMENTSPD-----FAVGEKWDSLSYGPDGKPDANQDGHR 174
T +YM+ + GE WD + P + A + R
Sbjct: 413 IDTVLYMKEKATKAKPGILLFGEGWDLATPLPHEQKAALANAPR 456
>pdb|3KLL|A Chain A, Crystal Structure Of Lactobacillus Reuteri N-Terminally
Truncated Glucansucrase Gtf180-Maltose Complex
Length = 1039
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 6 YDLDAS---KYGSQADLKSLIQAFRQKGIKCLADMV 38
YDL S KYGS DL++ +QA + G++ +AD V
Sbjct: 732 YDLGXSTPNKYGSDEDLRNALQALHKAGLQAIADWV 767
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 9/47 (19%)
Query: 89 GEDFQPAPDIDHLNPRVQKELSDWMNWLKT---------EIGFDGWR 126
G +F A DID+ NP VQ E +W+ +L E FDG R
Sbjct: 238 GAEFLLANDIDNSNPVVQAEELNWLYYLXNFGTITGNNPEANFDGIR 284
>pdb|3KLK|A Chain A, Crystal Structure Of Lactobacillus Reuteri N-Terminally
Truncated Glucansucrase Gtf180 In Triclinic Apo- Form
Length = 1039
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 6 YDLDAS---KYGSQADLKSLIQAFRQKGIKCLADMV 38
YDL S KYGS DL++ +QA + G++ +AD V
Sbjct: 732 YDLGMSTPNKYGSDEDLRNALQALHKAGLQAIADWV 767
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 9/47 (19%)
Query: 89 GEDFQPAPDIDHLNPRVQKELSDWMNWLKT---------EIGFDGWR 126
G +F A DID+ NP VQ E +W+ +L E FDG R
Sbjct: 238 GAEFLLANDIDNSNPVVQAEELNWLYYLMNFGTITGNNPEANFDGIR 284
>pdb|2Z1K|A Chain A, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|B Chain B, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|C Chain C, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|D Chain D, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
Length = 475
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 62/162 (38%), Gaps = 31/162 (19%)
Query: 14 GSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYC---IFEGGTSDDRLDWG-- 68
G L+ L++ G++ + D V NH GRG + + E G DW
Sbjct: 94 GGNEALRHLLEVAHAHGVRVILDGVFNH------TGRGFFAFQHLXENGEQSPYRDWYHV 147
Query: 69 ---PSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKE-LSDWMNWLKTEIGFDG 124
P Y GN + P + P V++ L+ +W++ G DG
Sbjct: 148 KGFPLKAYTAHPNYEAWWGNPEL-------PKLKVETPAVREYLLAVAEHWIR--FGVDG 198
Query: 125 WRFDFVKGYAPSIT-----KVYMENTSPD-FAVGEKWDSLSY 160
WR D V P T + ++ +P+ + VGE W+ +
Sbjct: 199 WRLD-VPNEIPDPTFWREFRQRVKGANPEAYIVGEIWEEADF 239
>pdb|3TTO|A Chain A, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Triclinic Form
pdb|3TTO|B Chain B, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Triclinic Form
pdb|3TTO|C Chain C, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Triclinic Form
pdb|3TTO|D Chain D, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Triclinic Form
pdb|3TTQ|A Chain A, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Orthorhombic Apo-Form At 1.9 Angstrom Resolution
Length = 1108
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 11 SKYGSQADLKSLIQAFRQKGIKCLADMVINH 41
+KYG+ DL++ IQA ++ +AD+V N
Sbjct: 907 TKYGTDGDLRATIQALHHANMQVMADVVDNQ 937
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 9/49 (18%)
Query: 91 DFQPAPDIDHLNPRVQKELSDWMNWL---------KTEIGFDGWRFDFV 130
DF A D+D+ NP VQ E +W+++L + + FD R D V
Sbjct: 407 DFLLANDVDNSNPVVQAENLNWLHYLMNFGTITAGQDDANFDSIRIDAV 455
>pdb|1G94|A Chain A, Crystal Structure Analysis Of The Ternary Complex Between
Psychrophilic Alpha Amylase From Pseudoalteromonas
Haloplanctis In Complex With A Hepta-Saccharide And A
Tris Molecule
pdb|1G9H|A Chain A, Ternary Complex Between Psychrophilic Alpha-Amylase, Comii
(Pseudo Tri-Saccharide From Bayer) And Tris (2-Amino-2-
Hydroxymethyl-Propane-1,3-Diol)
pdb|1L0P|A Chain A, Crystal Structure Analysis Of The Complex Between
Psychrophilic Alpha Amylase From Pseudoalteromonas
Haloplanctis And Nitrate
Length = 448
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 112/284 (39%), Gaps = 47/284 (16%)
Query: 6 YDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRL 65
Y+L S+ G++A ++ G+ D +INH A G G GT+ +
Sbjct: 55 YELQ-SRGGNRAQFIDMVNRCSAAGVDIYVDTLINHMAA----GSGT------GTAGNSF 103
Query: 66 DWGPSFICRGDKEYSDGQ--GNDDTGED--------FQPAPDIDHLNPRVQKELSDWMNW 115
SF +++ + N D G D D+D + VQ ++ ++N
Sbjct: 104 G-NKSFPIYSPQDFHESCTINNSDYGNDRYRVQNCELVGLADLDTASNYVQNTIAAYIND 162
Query: 116 LKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRG 175
L+ IG G+RFD K A S + M + V ++ +Q G
Sbjct: 163 LQA-IGVKGFRFDASKHVAASDIQSLMAKVNGSPVVFQE------------VIDQGGEAV 209
Query: 176 ALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNH 235
+++ G V F ++T+ + G L L + G+ GF+ +AV F+DNH
Sbjct: 210 GASEYLST--GLVTEFKYSTE-LGNTFRNGSLAWLSNF-GEGWGFM--PSSSAVVFVDNH 263
Query: 236 DT----GSTQRLWPFPSDKVM-LGYAYILTHP-GTPCIFYDHFF 273
D G + F ++ L ++L +P G P + + F
Sbjct: 264 DNQRGHGGAGNVITFEDGRLYDLANVFMLAYPYGYPKVMSSYDF 307
>pdb|3UCQ|A Chain A, Crystal Structure Of Amylosucrase From Deinococcus
Geothermalis
pdb|3UER|A Chain A, Crystal Structure Of Amylosucrase From Deinococcus
Geothermalis In Complex With Turanose
Length = 655
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 14 GSQADLKSLIQAFRQKGIKCLADMVINHRTAE 45
G+ DL +L +A R +GI + D+V+NH E
Sbjct: 158 GTMDDLSALARALRGRGISLVLDLVLNHVARE 189
>pdb|1JD9|A Chain A, Crystal Structure Analysis Of The Mutant K300q Of
Pseudoalteromonas Haloplanctis Alpha-amylase
Length = 453
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 112/284 (39%), Gaps = 47/284 (16%)
Query: 6 YDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRL 65
Y+L S+ G++A ++ G+ D +INH A G G GT+ +
Sbjct: 55 YELQ-SRGGNRAQFIDMVNRCSAAGVDIYVDTLINHMAA----GSGT------GTAGNSF 103
Query: 66 DWGPSFICRGDKEYSDGQ--GNDDTGED--------FQPAPDIDHLNPRVQKELSDWMNW 115
SF +++ + N D G D D+D + VQ ++ ++N
Sbjct: 104 G-NKSFPIYSPQDFHESCTINNSDYGNDRYRVQNCELVGLADLDTASNYVQNTIAAYIND 162
Query: 116 LKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRG 175
L+ IG G+RFD K A S + M + V ++ +Q G
Sbjct: 163 LQA-IGVKGFRFDASKHVAASDIQSLMAKVNGSPVVFQE------------VIDQGGEAV 209
Query: 176 ALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNH 235
+++ G V F ++T+ + G L L + G+ GF+ +AV F+DNH
Sbjct: 210 GASEYLST--GLVTEFKYSTE-LGNTFRNGSLAWLSNF-GEGWGFM--PSSSAVVFVDNH 263
Query: 236 DT----GSTQRLWPFPSDKVM-LGYAYILTHP-GTPCIFYDHFF 273
D G + F ++ L ++L +P G P + + F
Sbjct: 264 DNQRGHGGAGNVITFEDGRLYDLANVFMLAYPYGYPQVMSSYDF 307
>pdb|1JD7|A Chain A, Crystal Structure Analysis Of The Mutant K300r Of
Pseudoalteromonas Haloplanctis Alpha-Amylase
Length = 453
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 112/284 (39%), Gaps = 47/284 (16%)
Query: 6 YDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRL 65
Y+L S+ G++A ++ G+ D +INH A G G GT+ +
Sbjct: 55 YELQ-SRGGNRAQFIDMVNRCSAAGVDIYVDTLINHMAA----GSGT------GTAGNSF 103
Query: 66 DWGPSFICRGDKEYSDGQ--GNDDTGED--------FQPAPDIDHLNPRVQKELSDWMNW 115
SF +++ + N D G D D+D + VQ ++ ++N
Sbjct: 104 G-NKSFPIYSPQDFHESCTINNSDYGNDRYRVQNCELVGLADLDTASNYVQNTIAAYIND 162
Query: 116 LKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRG 175
L+ IG G+RFD K A S + M + V ++ +Q G
Sbjct: 163 LQA-IGVKGFRFDASKHVAASDIQSLMAKVNGSPVVFQE------------VIDQGGEAV 209
Query: 176 ALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNH 235
+++ G V F ++T+ + G L L + G+ GF+ +AV F+DNH
Sbjct: 210 GASEYLST--GLVTEFKYSTE-LGNTFRNGSLAWLSNF-GEGWGFM--PSSSAVVFVDNH 263
Query: 236 DT----GSTQRLWPFPSDKVM-LGYAYILTHP-GTPCIFYDHFF 273
D G + F ++ L ++L +P G P + + F
Sbjct: 264 DNQRGHGGAGNVITFEDGRLYDLANVFMLAYPYGYPRVMSSYDF 307
>pdb|1B0I|A Chain A, Alpha-Amylase From Alteromonas Haloplanctis
pdb|1AQH|A Chain A, Alpha-Amylase From Alteromonas Haloplanctis
pdb|1AQM|A Chain A, Alpha-Amylase From Alteromonas Haloplanctis Complexed With
Tris
Length = 453
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 112/284 (39%), Gaps = 47/284 (16%)
Query: 6 YDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRL 65
Y+L S+ G++A ++ G+ D +INH A G G GT+ +
Sbjct: 55 YELQ-SRGGNRAQFIDMVNRCSAAGVDIYVDTLINHMAA----GSGT------GTAGNSF 103
Query: 66 DWGPSFICRGDKEYSDGQ--GNDDTGED--------FQPAPDIDHLNPRVQKELSDWMNW 115
SF +++ + N D G D D+D + VQ ++ ++N
Sbjct: 104 G-NKSFPIYSPQDFHESCTINNSDYGNDRYRVQNCELVGLADLDTASNYVQNTIAAYIND 162
Query: 116 LKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRG 175
L+ IG G+RFD K A S + M + V ++ +Q G
Sbjct: 163 LQA-IGVKGFRFDASKHVAASDIQSLMAKVNGSPVVFQE------------VIDQGGEAV 209
Query: 176 ALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNH 235
+++ G V F ++T+ + G L L + G+ GF+ +AV F+DNH
Sbjct: 210 GASEYLST--GLVTEFKYSTE-LGNTFRNGSLAWLSNF-GEGWGFM--PSSSAVVFVDNH 263
Query: 236 DT----GSTQRLWPFPSDKVM-LGYAYILTHP-GTPCIFYDHFF 273
D G + F ++ L ++L +P G P + + F
Sbjct: 264 DNQRGHGGAGNVITFEDGRLYDLANVFMLAYPYGYPKVMSSYDF 307
>pdb|3UEQ|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With Turanose
Length = 632
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 18/132 (13%)
Query: 14 GSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGR----------GIYCIFEGGTSDD 63
G+ DL+ +I A + GI + D + NH + E + + Y IF D
Sbjct: 164 GTIGDLREVIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPD 223
Query: 64 RLDWG-----PSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKT 118
+ D P G + DG+ T FQ D+++ NP V + ++ M +L
Sbjct: 224 QYDRTLREIFPDQHPGGFSQLEDGRWVWTTFNSFQ--WDLNYSNPWVFRAMAGEMLFL-A 280
Query: 119 EIGFDGWRFDFV 130
+G D R D V
Sbjct: 281 NLGVDILRMDAV 292
>pdb|1G5A|A Chain A, Amylosucrase From Neisseria Polysaccharea
pdb|1JG9|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With D-glucose
pdb|1MW1|A Chain A, Amylosucrase Soaked With 14mm Sucrose.
pdb|1MW2|A Chain A, Amylosucrase Soaked With 100mm Sucrose
pdb|1MW3|A Chain A, Amylosucrase Soaked With 1m Sucrose
Length = 628
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 18/132 (13%)
Query: 14 GSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGR----------GIYCIFEGGTSDD 63
G+ DL+ +I A + GI + D + NH + E + + Y IF D
Sbjct: 160 GTIGDLREVIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPD 219
Query: 64 RLDWG-----PSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKT 118
+ D P G + DG+ T FQ D+++ NP V + ++ M +L
Sbjct: 220 QYDRTLREIFPDQHPGGFSQLEDGRWVWTTFNSFQ--WDLNYSNPWVFRAMAGEMLFL-A 276
Query: 119 EIGFDGWRFDFV 130
+G D R D V
Sbjct: 277 NLGVDILRMDAV 288
>pdb|1MVY|A Chain A, Amylosucrase Mutant E328q Co-Crystallized With
Maltoheptaose.
pdb|1MW0|A Chain A, Amylosucrase Mutant E328q Co-crystallized With
Maltoheptaose Then Soaked With Maltoheptaose.
pdb|1S46|A Chain A, Covalent Intermediate Of The E328q Amylosucrase Mutant
pdb|1ZS2|A Chain A, Amylosucrase Mutant E328q In A Ternary Complex With
Sucrose And Maltoheptaose
Length = 628
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 18/132 (13%)
Query: 14 GSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGR----------GIYCIFEGGTSDD 63
G+ DL+ +I A + GI + D + NH + E + + Y IF D
Sbjct: 160 GTIGDLREVIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPD 219
Query: 64 RLDWG-----PSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKT 118
+ D P G + DG+ T FQ D+++ NP V + ++ M +L
Sbjct: 220 QYDRTLREIFPDQHPGGFSQLEDGRWVWTTFNSFQ--WDLNYSNPWVFRAMAGEMLFL-A 276
Query: 119 EIGFDGWRFDFV 130
+G D R D V
Sbjct: 277 NLGVDILRMDAV 288
>pdb|4FLR|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290l From Neisseria Polysaccharea
Length = 628
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 18/132 (13%)
Query: 14 GSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGR----------GIYCIFEGGTSDD 63
G+ DL+ +I A + GI + D + NH + E + + Y IF D
Sbjct: 160 GTIGDLREVIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPD 219
Query: 64 RLDWG-----PSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKT 118
+ D P G + DG+ T FQ D+++ NP V + ++ M +L
Sbjct: 220 QYDRTLREIFPDQHPGGFSQLEDGRWVWTTFNSFQ--WDLNYSNPWVFRAMAGEMLFL-A 276
Query: 119 EIGFDGWRFDFV 130
+G D R D V
Sbjct: 277 NLGVDILRMDAV 288
>pdb|4FLQ|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290i From Neisseria Polysaccharea
Length = 628
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 18/132 (13%)
Query: 14 GSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGR----------GIYCIFEGGTSDD 63
G+ DL+ +I A + GI + D + NH + E + + Y IF D
Sbjct: 160 GTIGDLREVIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPD 219
Query: 64 RLDWG-----PSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKT 118
+ D P G + DG+ T FQ D+++ NP V + ++ M +L
Sbjct: 220 QYDRTLREIFPDQHPGGFSQLEDGRWVWTTFNSFQ--WDLNYSNPWVFRAMAGEMLFL-A 276
Query: 119 EIGFDGWRFDFV 130
+G D R D V
Sbjct: 277 NLGVDILRMDAV 288
>pdb|1JGI|A Chain A, Crystal Structure Of The Active Site Mutant Glu328gln Of
Amylosucrase From Neisseria Polysaccharea In Complex
With The Natural Substrate Sucrose
Length = 628
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 18/132 (13%)
Query: 14 GSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGR----------GIYCIFEGGTSDD 63
G+ DL+ +I A + GI + D + NH + E + + Y IF D
Sbjct: 160 GTIGDLREVIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPD 219
Query: 64 RLDWG-----PSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKT 118
+ D P G + DG+ T FQ D+++ NP V + ++ M +L
Sbjct: 220 QYDRTLREIFPDQHPGGFSQLEDGRWVWTTFNSFQ--WDLNYSNPWVFRAMAGEMLFL-A 276
Query: 119 EIGFDGWRFDFV 130
+G D R D V
Sbjct: 277 NLGVDILRMDAV 288
>pdb|4FLO|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290c From Neisseria Polysaccharea
Length = 628
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 18/132 (13%)
Query: 14 GSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGR----------GIYCIFEGGTSDD 63
G+ DL+ +I A + GI + D + NH + E + + Y IF D
Sbjct: 160 GTIGDLREVIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPD 219
Query: 64 RLDWG-----PSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKT 118
+ D P G + DG+ T FQ D+++ NP V + ++ M +L
Sbjct: 220 QYDRTLREIFPDQHPGGFSQLEDGRWVWTTFNSFQ--WDLNYSNPWVFRAMAGEMLFL-A 276
Query: 119 EIGFDGWRFDFV 130
+G D R D V
Sbjct: 277 NLGVDILRMDAV 288
>pdb|4FLS|A Chain A, Crystal Structure Of Amylosucrase Inactive Double Mutant
F290k-E328q From Neisseria Polysaccharea In Complex With
Sucrose
Length = 628
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 18/132 (13%)
Query: 14 GSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGR----------GIYCIFEGGTSDD 63
G+ DL+ +I A + GI + D + NH + E + + Y IF D
Sbjct: 160 GTIGDLREVIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPD 219
Query: 64 RLDWG-----PSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKT 118
+ D P G + DG+ T FQ D+++ NP V + ++ M +L
Sbjct: 220 QYDRTLREIFPDQHPGGFSQLEDGRWVWTTFNSFQ--WDLNYSNPWVFRAMAGEMLFL-A 276
Query: 119 EIGFDGWRFDFV 130
+G D R D V
Sbjct: 277 NLGVDILRMDAV 288
>pdb|1UA7|A Chain A, Crystal Structure Analysis Of Alpha-Amylase From Bacillus
Subtilis Complexed With Acarbose
Length = 422
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 6 YDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 43
Y + G++ + K + A + GIK + D VINH T
Sbjct: 64 YQIGNRYLGTEQEFKEMCAAAEEYGIKVIVDAVINHTT 101
>pdb|1BAG|A Chain A, Alpha-Amylase From Bacillus Subtilis Complexed With
Maltopentaose
Length = 425
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 6 YDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 43
Y + G++ + K + A + GIK + D VINH T
Sbjct: 67 YQIGNRYLGTEQEFKEMCAAAEEYGIKVIVDAVINHTT 104
>pdb|3AIB|A Chain A, Crystal Structure Of Glucansucrase
pdb|3AIB|B Chain B, Crystal Structure Of Glucansucrase
pdb|3AIB|C Chain C, Crystal Structure Of Glucansucrase
pdb|3AIB|D Chain D, Crystal Structure Of Glucansucrase
pdb|3AIB|G Chain G, Crystal Structure Of Glucansucrase
pdb|3AIB|E Chain E, Crystal Structure Of Glucansucrase
pdb|3AIB|F Chain F, Crystal Structure Of Glucansucrase
pdb|3AIB|H Chain H, Crystal Structure Of Glucansucrase
pdb|3AIC|A Chain A, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIC|B Chain B, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIC|C Chain C, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIC|D Chain D, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIC|E Chain E, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIC|F Chain F, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIC|G Chain G, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIC|H Chain H, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIE|A Chain A, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIE|B Chain B, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIE|C Chain C, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIE|D Chain D, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIE|E Chain E, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIE|F Chain F, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIE|G Chain G, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIE|H Chain H, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
Length = 844
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 6 YDLDASK---YGSQADLKSLIQAFRQKGIKCLADMV 38
YDL SK YG+ DL I+A KGIK +AD V
Sbjct: 679 YDLGISKPNKYGTADDLVKAIKALHSKGIKVMADWV 714
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Query: 89 GEDFQPAPDIDHLNPRVQKELSDWMNWLKT---------EIGFDGWRFDFV 130
G +F A D+D+ NP VQ E +W+++L + FD R D V
Sbjct: 186 GYEFLLANDVDNSNPVVQAEQLNWLHFLMNFGNIYANDPDANFDSIRVDAV 236
>pdb|3DHP|A Chain A, Probing The Role Of Aromatic Residues At The Secondary
Saccharide Binding Sites Of Human Salivary Alpha-Amylase
In Substrate Hydrolysis And Bacterial Binding
Length = 496
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 112/283 (39%), Gaps = 50/283 (17%)
Query: 10 ASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER-KDGRGIYC--IFEGGTSDDRLD 66
++ G++ + ++++ G++ D VINH G C F G+ D
Sbjct: 70 CTRSGNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRD---- 125
Query: 67 WGPSFICRGDKEYSDGQGNDDTG--EDFQPAPDIDHLNPR-----------VQKELSDWM 113
P+ G +++DG+ +G E++ A + V+ +++++M
Sbjct: 126 -FPAVPYSG-ADFNDGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYM 183
Query: 114 NWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSL--SYGPDG-KPDANQ 170
N L +IG G+R D K AP K A+ +K +L ++ P+G KP Q
Sbjct: 184 NHL-IDIGVAGFRIDASKHMAPGDIK----------AILDKLHNLNSNWFPEGSKPFIYQ 232
Query: 171 ---DGHRGALKDWVQAAGGAVAAFDFTTK-GILQAAVQGELWRLKDSNGKPPGFIGILPQ 226
D +K G V F + K G + GE + G+ GF +P
Sbjct: 233 EVIDLGGEPIKSSDYFGNGRVTEFKYGAKLGTVIRKWNGEKMSALKNWGEGAGF---MPS 289
Query: 227 N-AVTFIDNHDT------GSTQRLWPFPSDKVMLGYAYILTHP 262
+ A+ F+DNHD G L + + ++L HP
Sbjct: 290 DRALVFVDNHDNQRGHGAGGASILTFADARLYKMAVGFMLAHP 332
>pdb|2DH2|A Chain A, Crystal Structure Of Human Ed-4f2hc
Length = 424
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 13 YGSQADLKSLIQAFRQKGIKCLADMVINHR 42
+GS+ D SL+Q+ ++K I+ + D+ N+R
Sbjct: 78 FGSKEDFDSLLQSAKKKSIRVILDLTPNYR 107
>pdb|2DH3|A Chain A, Crystal Structure Of Human Ed-4f2hc
pdb|2DH3|B Chain B, Crystal Structure Of Human Ed-4f2hc
Length = 424
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 13 YGSQADLKSLIQAFRQKGIKCLADMVINHR 42
+GS+ D SL+Q+ ++K I+ + D+ N+R
Sbjct: 78 FGSKEDFDSLLQSAKKKSIRVILDLTPNYR 107
>pdb|1H3G|A Chain A, Cyclomaltodextrinase From Flavobacterium Sp. No. 92: From
Dna Sequence To Protein Structure
pdb|1H3G|B Chain B, Cyclomaltodextrinase From Flavobacterium Sp. No. 92: From
Dna Sequence To Protein Structure
Length = 601
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 58/158 (36%), Gaps = 19/158 (12%)
Query: 12 KYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER---KDGRGIYCIFEGG----TSDDR 64
+YGS D L R++G + D+V++H KD I GG T R
Sbjct: 194 RYGSNEDFVRLSTEARKRGXGLIQDVVLSHIGKHHWWXKDLPTPDWINYGGKFVPTQHHR 253
Query: 65 LDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDG 124
+ + + D E N G + PD++ NP V L W G G
Sbjct: 254 VAVQDPYAAQADSE------NFTKGWFVEGXPDLNQTNPLVANYLIQNNIWWIEYAGLSG 307
Query: 125 WRFDFVKGYAP-SITKVYMENTSPDF----AVGEKWDS 157
R D GY+ + Y ++ VGE+W +
Sbjct: 308 LRID-TYGYSDGAFLTEYTRRLXAEYPRLNXVGEEWST 344
>pdb|1KXH|A Chain A, Crystal Structure Of The Complex Between An Inactive
Mutant Of Psychrophilic Alpha-Amylase (D174n) And
Acarbose
Length = 448
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 112/284 (39%), Gaps = 47/284 (16%)
Query: 6 YDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRL 65
Y+L S+ G++A ++ G+ D +INH A G G GT+ +
Sbjct: 55 YELQ-SRGGNRAQFIDMVNRCSAAGVDIYVDTLINHMAA----GSGT------GTAGNSF 103
Query: 66 DWGPSFICRGDKEYSDGQ--GNDDTGED--------FQPAPDIDHLNPRVQKELSDWMNW 115
SF +++ + N D G D D+D + VQ ++ ++N
Sbjct: 104 G-NKSFPIYSPQDFHESCTINNSDYGNDRYRVQNCELVGLADLDTASNYVQNTIAAYIND 162
Query: 116 LKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRG 175
L+ IG G+RF+ K A S + M + V ++ +Q G
Sbjct: 163 LQA-IGVKGFRFNASKHVAASDIQSLMAKVNGSPVVFQE------------VIDQGGEAV 209
Query: 176 ALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNH 235
+++ G V F ++T+ + G L L + G+ GF+ +AV F+DNH
Sbjct: 210 GASEYLST--GLVTEFKYSTE-LGNTFRNGSLAWLSNF-GEGWGFM--PSSSAVVFVDNH 263
Query: 236 DT----GSTQRLWPFPSDKVM-LGYAYILTHP-GTPCIFYDHFF 273
D G + F ++ L ++L +P G P + + F
Sbjct: 264 DNQRGHGGAGNVITFEDGRLYDLANVFMLAYPYGYPKVMSSYDF 307
>pdb|1JXK|A Chain A, Role Of Ethe Mobile Loop In The Mehanism Of Human Salivary
Amylase
pdb|1MFU|A Chain A, Probing The Role Of A Mobile Loop In Human Salivary
Amylase: Structural Studies On The Loop-Deleted Mutant
Length = 491
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 112/278 (40%), Gaps = 45/278 (16%)
Query: 10 ASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER-KDGRGIYC--IFEGGTSDDRLD 66
++ G++ + ++++ G++ D VINH G C F G+ D
Sbjct: 70 CTRSGNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRD---- 125
Query: 67 WGPSFICRGDKEYSDGQGNDDTG--EDFQPAPDIDHLNPR-----------VQKELSDWM 113
P+ G +++DG+ +G E++ A + V+ +++++M
Sbjct: 126 -FPAVPYSG-WDFNDGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYM 183
Query: 114 NWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSL--SYGPDG-KPDANQ 170
N L +IG G+R D K P K A+ +K +L ++ P+G KP Q
Sbjct: 184 NHL-IDIGVAGFRIDASKHMWPGDIK----------AILDKLHNLNSNWFPEGSKPFIYQ 232
Query: 171 ---DGHRGALKDWVQAAGGAVAAFDFTTK-GILQAAVQGELWRLKDSNGKPPGFIGILPQ 226
D +K G V F + K G + GE + G+ GF +P
Sbjct: 233 EVIDLGGEPIKSSDYFGNGRVTEFKYGAKLGTVIRKWNGEKMSYLKNWGEGWGF---MPS 289
Query: 227 N-AVTFIDNHDTGSTQRLWPFPSDKVM-LGYAYILTHP 262
+ A+ F+DNHD + F ++ + ++L HP
Sbjct: 290 DRALVFVDNHDNQRGHSILTFWDARLYKMAVGFMLAHP 327
>pdb|3DHU|A Chain A, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|B Chain B, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|C Chain C, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|D Chain D, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
Length = 449
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 12 KYGSQADLKSLIQAFRQKGIKCLADMVINHRT 43
+YG+ AD K+L + G+K + D+V NH +
Sbjct: 79 EYGTLADFKALTDRAHELGMKVMLDIVYNHTS 110
>pdb|3S9A|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V
(Closed-Form)
pdb|3S9B|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V (Open-Form)
pdb|3S9C|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V In Complex
With The Fragment (Residues 1533-1546) Of Human Factor V
pdb|3SBK|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V
(Ppack-Bound Form)
Length = 234
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 55 IFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN 114
I +GG D G IC G+ G++ G+ HL P V ++ D+ N
Sbjct: 168 ILKGGRDTCHGDSGGPLICNGEMHGIVAGGSEPCGQ---------HLKPAVYTKVFDYNN 218
Query: 115 WLKTEIG 121
W+++ I
Sbjct: 219 WIQSIIA 225
>pdb|4AEF|A Chain A, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
pdb|4AEF|B Chain B, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
Length = 645
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 69/181 (38%), Gaps = 33/181 (18%)
Query: 96 PDIDHLNPRVQKELSD-WMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPD-FAVGE 153
P ++H NP+V++ + + + W T G DG+R D G P + K E + + +GE
Sbjct: 380 PRLNHDNPKVREFIKNVILFW--TNKGVDGFRMDVAHGVPPEVWKEVREALPKEKYLIGE 437
Query: 154 KWDSLSYGPDGKPDANQ---DGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRL 210
D DA D G + + A ++ T A L
Sbjct: 438 VMD----------DARLWLFDKFHGVMNYRLYDAILRFFGYEEIT-----AEEFLNELEL 482
Query: 211 KDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSD--KVMLGYAYILTHPGTPCIF 268
S P ++ F+DNHD +R D K + +++T+ G P +F
Sbjct: 483 LSSYYGPAEYL------MYNFLDNHD---VERFLDIVGDKRKYVCALVFLMTYKGIPSLF 533
Query: 269 Y 269
Y
Sbjct: 534 Y 534
>pdb|3B0G|A Chain A, Assimilatory Nitrite Reductase (Nii3) From Tobbaco Leaf
pdb|3VKP|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With Low X-Ray Dose
pdb|3VKQ|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With Middle X-Ray Dose
pdb|3VKR|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With High X-Ray Dose
pdb|3VKS|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No Complex From
Tobbaco Leaf
pdb|3VKT|A Chain A, Assimilatory Nitrite Reductase (Nii3) - Nh2oh Complex From
Tobbaco Leaf
Length = 591
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 113 MNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSY 160
M WL E+G +G+R + K + + +E SP+ V ++W+ Y
Sbjct: 339 MMWLIDELGVEGFRAEVEK----RMPQQQLERASPEDLVQKQWERRDY 382
>pdb|2WPN|A Chain A, Structure Of The Oxidised, As-Isolated Nifese Hydrogenase
From D. Vulgaris Hildenborough
Length = 317
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 179 DWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTG 238
DW+ G V A D K L+ + E+ ++ DS+G+P F G ++D +D G
Sbjct: 198 DWI--VGTVVLALDAIKKNGLEGGL-AEVVKVLDSDGRPTPFFGRNIHENCPYLDKYDEG 254
Query: 239 STQRLWPFPSDKVMLGY 255
+ +DKV Y
Sbjct: 255 VMSATF---TDKVGCRY 268
>pdb|3B0M|A Chain A, M175k Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 113 MNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSY 160
M WL E+G +G+R + K + + +E SP+ V ++W+ Y
Sbjct: 339 MMWLIDELGVEGFRAEVEK----RMPQQQLERASPEDLVQKQWERRDY 382
>pdb|3B0L|A Chain A, M175g Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 113 MNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSY 160
M WL E+G +G+R + K + + +E SP+ V ++W+ Y
Sbjct: 339 MMWLIDELGVEGFRAEVEK----RMPQQQLERASPEDLVQKQWERRDY 382
>pdb|3B0J|A Chain A, M175e Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 113 MNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSY 160
M WL E+G +G+R + K + + +E SP+ V ++W+ Y
Sbjct: 339 MMWLIDELGVEGFRAEVEK----RMPQQQLERASPEDLVQKQWERRDY 382
>pdb|3VLX|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant -
Ligand Free Form From Tobacco Leaf
pdb|3VLY|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - So3
Partial Complex From Tobacco Leaf
pdb|3VLZ|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - So3
Full Complex From Tobacco Leaf
pdb|3VM0|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - No2
Complex From Tobacco Leaf
pdb|3VM1|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant -
Hco3 Complex From Tobacco Leaf
Length = 584
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 113 MNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSY 160
M WL E+G +G+R + K + + +E SP+ V ++W+ Y
Sbjct: 339 MMWLIDELGVEGFRAEVEK----RMPQQQLERASPEDLVQKQWERRDY 382
>pdb|3M07|A Chain A, 1.4 Angstrom Resolution Crystal Structure Of Putative
Alpha Amylase From Salmonella Typhimurium
Length = 618
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 11 SKYGSQADLKSLIQAFRQKGIKCLADMVINH 41
S YG+ D K+ I A G+ + D+V+NH
Sbjct: 197 SAYGTPDDFKAFIDAAHGYGLSVVLDIVLNH 227
>pdb|3B0N|A Chain A, Q448k Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 113 MNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSY 160
M WL E+G +G+R + K + + +E SP+ V ++W+ Y
Sbjct: 339 MMWLIDELGVEGFRAEVEK----RMPQQQLERASPEDLVQKQWERRDY 382
>pdb|3K8K|A Chain A, Crystal Structure Of Susg
pdb|3K8K|B Chain B, Crystal Structure Of Susg
pdb|3K8M|A Chain A, Crystal Structure Of Susg With Acarbose
pdb|3K8M|B Chain B, Crystal Structure Of Susg With Acarbose
Length = 669
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 229 VTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFY 269
T + NHD T +DK L A +LT G P I+Y
Sbjct: 468 ATKLSNHDEDRTSSKLGKSADKCKLAAAVLLTSAGHPYIYY 508
>pdb|1B2Y|A Chain A, Structure Of Human Pancreatic Alpha-Amylase In Complex
With The Carbohydrate Inhibitor Acarbose
Length = 496
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 109/286 (38%), Gaps = 56/286 (19%)
Query: 10 ASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER-KDGRGIYC--IFEGGTSDDRLD 66
++ G++ + ++++ G++ D VINH G C F G+ D
Sbjct: 70 CTRSGNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRD---- 125
Query: 67 WGPSFICRGDKEYSDGQGNDDTG--EDFQPAP-----------DIDHLNPRVQKELSDWM 113
P+ G +++DG+ +G E++ A D+ V+ +++++M
Sbjct: 126 -FPAVPYSG-WDFNDGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYM 183
Query: 114 NWLKTEIGFDGWRFDFVKGYAPSITKVYMEN----TSPDFAVGEK----WDSLSYGPDGK 165
N L +IG G+R D K P K ++ S F G K + + G G+
Sbjct: 184 NHL-IDIGVAGFRLDASKHMWPGDIKAILDKLHNLNSNWFPAGSKPFIYQEVIDLG--GE 240
Query: 166 PDANQDGHRGALKDWVQAAGGAVAAFDFTTK-GILQAAVQGELWRLKDSNGKPPGFIGIL 224
P + D G V F + K G + GE + G+ GF+
Sbjct: 241 PIKSSD----------YFGNGRVTEFKYGAKLGTVIRKWNGEKMSYLKNWGEGWGFVP-- 288
Query: 225 PQNAVTFIDNHDT--------GSTQRLWPFPSDKVMLGYAYILTHP 262
A+ F+DNHD S W K+ +G ++L HP
Sbjct: 289 SDRALVFVDNHDNQRGHGAGGASILTFWDARLYKMAVG--FMLAHP 332
>pdb|1KGU|A Chain A, Three Dimensional Structure Analysis Of The R337a Variant
Of Human Pancreatic Alpha-Amylase
Length = 496
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 109/286 (38%), Gaps = 56/286 (19%)
Query: 10 ASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER-KDGRGIYC--IFEGGTSDDRLD 66
++ G++ + ++++ G++ D VINH G C F G+ D
Sbjct: 70 CTRSGNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRD---- 125
Query: 67 WGPSFICRGDKEYSDGQGNDDTG--EDFQPAP-----------DIDHLNPRVQKELSDWM 113
P+ G +++DG+ +G E++ A D+ V+ +++++M
Sbjct: 126 -FPAVPYSG-WDFNDGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYM 183
Query: 114 NWLKTEIGFDGWRFDFVKGYAPSITKVYMEN----TSPDFAVGEK----WDSLSYGPDGK 165
N L +IG G+R D K P K ++ S F G K + + G G+
Sbjct: 184 NHL-IDIGVAGFRLDASKHMWPGDIKAILDKLHNLNSNWFPAGSKPFIYQEVIDLG--GE 240
Query: 166 PDANQDGHRGALKDWVQAAGGAVAAFDFTTK-GILQAAVQGELWRLKDSNGKPPGFIGIL 224
P + D G V F + K G + GE + G+ GF+
Sbjct: 241 PIKSSD----------YFGNGRVTEFKYGAKLGTVIRKWNGEKMSYLKNWGEGWGFVP-- 288
Query: 225 PQNAVTFIDNHDT--------GSTQRLWPFPSDKVMLGYAYILTHP 262
A+ F+DNHD S W K+ +G ++L HP
Sbjct: 289 SDRALVFVDNHDNQRGHGAGGASILTFWDARLYKMAVG--FMLAHP 332
>pdb|1KGW|A Chain A, Three Dimensional Structure Analysis Of The R337q Variant
Of Human Pancreatic Alpha-Mylase
Length = 496
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 109/286 (38%), Gaps = 56/286 (19%)
Query: 10 ASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER-KDGRGIYC--IFEGGTSDDRLD 66
++ G++ + ++++ G++ D VINH G C F G+ D
Sbjct: 70 CTRSGNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRD---- 125
Query: 67 WGPSFICRGDKEYSDGQGNDDTG--EDFQPAP-----------DIDHLNPRVQKELSDWM 113
P+ G +++DG+ +G E++ A D+ V+ +++++M
Sbjct: 126 -FPAVPYSG-WDFNDGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYM 183
Query: 114 NWLKTEIGFDGWRFDFVKGYAPSITKVYMEN----TSPDFAVGEK----WDSLSYGPDGK 165
N L +IG G+R D K P K ++ S F G K + + G G+
Sbjct: 184 NHL-IDIGVAGFRLDASKHMWPGDIKAILDKLHNLNSNWFPAGSKPFIYQEVIDLG--GE 240
Query: 166 PDANQDGHRGALKDWVQAAGGAVAAFDFTTK-GILQAAVQGELWRLKDSNGKPPGFIGIL 224
P + D G V F + K G + GE + G+ GF+
Sbjct: 241 PIKSSD----------YFGNGRVTEFKYGAKLGTVIRKWNGEKMSYLKNWGEGWGFVP-- 288
Query: 225 PQNAVTFIDNHDT--------GSTQRLWPFPSDKVMLGYAYILTHP 262
A+ F+DNHD S W K+ +G ++L HP
Sbjct: 289 SDRALVFVDNHDNQRGHGAGGASILTFWDARLYKMAVG--FMLAHP 332
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,539,188
Number of Sequences: 62578
Number of extensions: 595847
Number of successful extensions: 1468
Number of sequences better than 100.0: 179
Number of HSP's better than 100.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 1208
Number of HSP's gapped (non-prelim): 253
length of query: 350
length of database: 14,973,337
effective HSP length: 100
effective length of query: 250
effective length of database: 8,715,537
effective search space: 2178884250
effective search space used: 2178884250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)