Query 018833
Match_columns 350
No_of_seqs 121 out of 1559
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 04:25:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018833.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018833hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00196 alpha-amylase; Provis 100.0 1.5E-67 3.3E-72 496.8 36.5 348 2-349 77-427 (428)
2 PLN02361 alpha-amylase 100.0 1.5E-63 3.2E-68 464.2 34.0 336 1-349 61-401 (401)
3 PLN02784 alpha-amylase 100.0 6.3E-58 1.4E-62 447.7 35.8 341 1-350 553-894 (894)
4 PRK09441 cytoplasmic alpha-amy 100.0 3.4E-50 7.3E-55 389.2 33.1 300 2-324 58-429 (479)
5 PRK10785 maltodextrin glucosid 100.0 5E-50 1.1E-54 395.6 20.3 296 2-324 212-559 (598)
6 TIGR02403 trehalose_treC alpha 100.0 1.2E-48 2.6E-53 382.2 25.2 303 2-325 61-501 (543)
7 PRK09505 malS alpha-amylase; R 100.0 1E-48 2.2E-53 385.8 24.0 293 2-323 278-681 (683)
8 TIGR02456 treS_nterm trehalose 100.0 1.6E-48 3.4E-53 382.1 25.2 303 2-325 62-490 (539)
9 PRK10933 trehalose-6-phosphate 100.0 9.3E-47 2E-51 368.4 26.5 302 2-325 67-507 (551)
10 TIGR02104 pulA_typeI pullulana 100.0 2.5E-42 5.5E-47 342.0 21.8 309 2-343 207-600 (605)
11 PRK12313 glycogen branching en 100.0 1.1E-41 2.3E-46 339.5 25.2 303 2-343 206-585 (633)
12 TIGR01515 branching_enzym alph 100.0 4.6E-41 9.9E-46 332.9 24.6 302 2-342 192-571 (613)
13 PRK14706 glycogen branching en 100.0 2E-40 4.3E-45 326.7 25.7 301 2-342 203-579 (639)
14 PF00128 Alpha-amylase: Alpha 100.0 9.6E-43 2.1E-47 320.7 6.5 251 2-274 38-309 (316)
15 TIGR02402 trehalose_TreZ malto 100.0 1.1E-40 2.5E-45 325.0 21.0 274 2-325 146-536 (542)
16 PRK05402 glycogen branching en 100.0 5.8E-40 1.3E-44 330.7 25.7 303 2-343 301-681 (726)
17 TIGR02100 glgX_debranch glycog 100.0 1.8E-39 3.9E-44 322.7 24.0 306 2-342 228-661 (688)
18 PRK14510 putative bifunctional 100.0 3.7E-39 8E-44 336.8 20.9 265 2-302 231-580 (1221)
19 PRK03705 glycogen debranching 100.0 8.9E-39 1.9E-43 315.5 21.9 301 2-340 223-632 (658)
20 PRK12568 glycogen branching en 100.0 7.7E-38 1.7E-42 307.8 25.3 302 2-342 305-685 (730)
21 PRK13840 sucrose phosphorylase 100.0 1.7E-36 3.7E-41 287.4 25.0 288 2-323 55-466 (495)
22 TIGR03852 sucrose_gtfA sucrose 100.0 3.9E-37 8.5E-42 290.1 18.2 289 2-324 50-461 (470)
23 TIGR02102 pullulan_Gpos pullul 100.0 3.9E-36 8.4E-41 307.4 25.7 305 2-341 533-971 (1111)
24 PRK14705 glycogen branching en 100.0 3.4E-36 7.3E-41 309.6 22.6 303 2-343 801-1180(1224)
25 PLN02960 alpha-amylase 100.0 4.7E-35 1E-39 288.6 26.1 302 2-343 452-847 (897)
26 TIGR02455 TreS_stutzeri trehal 100.0 2.1E-34 4.6E-39 274.4 26.1 300 3-324 118-631 (688)
27 PLN02447 1,4-alpha-glucan-bran 100.0 6E-34 1.3E-38 280.9 24.6 301 2-343 286-687 (758)
28 PLN03244 alpha-amylase; Provis 100.0 7E-33 1.5E-37 268.5 23.1 299 2-343 427-822 (872)
29 TIGR02103 pullul_strch alpha-1 100.0 4E-33 8.6E-38 280.3 20.4 136 2-157 383-529 (898)
30 COG0366 AmyA Glycosidases [Car 100.0 8.7E-31 1.9E-35 257.0 19.3 311 2-324 63-484 (505)
31 KOG0471 Alpha-amylase [Carbohy 100.0 4.1E-30 8.9E-35 250.3 21.5 317 2-324 74-504 (545)
32 PLN02877 alpha-amylase/limit d 100.0 3E-30 6.6E-35 259.0 20.7 138 2-158 445-601 (970)
33 KOG2212 Alpha-amylase [Carbohy 100.0 1.7E-28 3.7E-33 214.9 18.4 309 6-341 85-463 (504)
34 COG0296 GlgB 1,4-alpha-glucan 100.0 1.2E-28 2.5E-33 237.9 17.4 279 2-323 200-558 (628)
35 COG1523 PulA Type II secretory 100.0 1.4E-28 3E-33 241.0 13.4 251 2-296 244-593 (697)
36 TIGR02401 trehalose_TreY malto 99.9 4.2E-26 9E-31 226.5 21.1 155 2-157 51-287 (825)
37 KOG0470 1,4-alpha-glucan branc 99.9 1.6E-23 3.5E-28 200.7 15.1 111 2-133 291-407 (757)
38 PRK14511 maltooligosyl trehalo 99.8 5.6E-20 1.2E-24 183.8 14.8 72 84-155 256-330 (879)
39 smart00642 Aamy Alpha-amylase 99.4 5.6E-13 1.2E-17 110.7 5.2 41 2-43 56-96 (166)
40 TIGR01531 glyc_debranch glycog 99.3 4.6E-10 1E-14 116.8 21.1 191 93-313 474-711 (1464)
41 PRK14507 putative bifunctional 99.2 5.7E-11 1.2E-15 126.8 12.6 72 84-155 1030-1114(1693)
42 COG3280 TreY Maltooligosyl tre 99.0 1.9E-09 4.2E-14 104.6 11.7 71 85-155 260-333 (889)
43 PF02324 Glyco_hydro_70: Glyco 98.9 5.2E-08 1.1E-12 94.1 14.2 206 88-313 136-422 (809)
44 PF14872 GHL5: Hypothetical gl 98.7 8.1E-08 1.8E-12 92.1 9.5 90 10-133 299-393 (811)
45 smart00810 Alpha-amyl_C2 Alpha 98.6 2.9E-07 6.3E-12 61.7 7.9 55 295-349 7-61 (61)
46 PF07821 Alpha-amyl_C2: Alpha- 98.2 5.7E-06 1.2E-10 55.1 6.2 51 295-349 7-59 (59)
47 PF14871 GHL6: Hypothetical gl 98.2 1.5E-05 3.2E-10 63.4 9.5 97 6-129 35-132 (132)
48 PF11941 DUF3459: Domain of un 97.9 2.4E-05 5.2E-10 57.9 5.8 47 280-326 1-54 (89)
49 PF02638 DUF187: Glycosyl hydr 97.8 0.00011 2.3E-09 67.6 9.4 91 16-129 69-162 (311)
50 PLN02635 disproportionating en 97.6 0.00034 7.5E-09 68.3 9.6 24 17-40 224-247 (538)
51 cd06593 GH31_xylosidase_YicI Y 97.5 0.00048 1E-08 63.4 8.6 98 9-135 61-163 (308)
52 PRK14508 4-alpha-glucanotransf 97.4 0.0074 1.6E-07 59.0 15.9 29 17-46 198-226 (497)
53 cd06592 GH31_glucosidase_KIAA1 97.2 0.0014 3E-08 60.2 8.2 91 18-132 71-166 (303)
54 cd06597 GH31_transferase_CtsY 97.2 0.0018 4E-08 60.3 8.8 37 96-132 152-188 (340)
55 PF14701 hDGE_amylase: glucano 96.9 0.0011 2.4E-08 62.5 4.8 45 3-48 57-108 (423)
56 TIGR00217 malQ 4-alpha-glucano 96.9 0.016 3.4E-07 56.9 12.9 29 17-46 212-240 (513)
57 PF02065 Melibiase: Melibiase; 96.8 0.0051 1.1E-07 58.2 8.3 94 11-133 100-195 (394)
58 KOG3625 Alpha amylase [Carbohy 96.8 0.039 8.5E-07 56.1 14.4 66 92-159 495-569 (1521)
59 cd06591 GH31_xylosidase_XylS X 96.8 0.0062 1.4E-07 56.3 8.7 87 18-131 67-159 (319)
60 PF02324 Glyco_hydro_70: Glyco 96.8 0.0011 2.4E-08 64.9 3.6 34 10-43 640-673 (809)
61 cd06594 GH31_glucosidase_YihQ 96.7 0.0074 1.6E-07 55.7 8.5 99 7-133 64-168 (317)
62 PF13199 Glyco_hydro_66: Glyco 96.6 0.0049 1.1E-07 60.6 6.7 99 15-131 168-268 (559)
63 PF02446 Glyco_hydro_77: 4-alp 96.6 0.01 2.2E-07 58.3 8.6 29 17-46 192-220 (496)
64 cd06599 GH31_glycosidase_Aec37 96.5 0.012 2.6E-07 54.4 8.3 90 18-131 74-168 (317)
65 PF13200 DUF4015: Putative gly 96.4 0.016 3.4E-07 53.1 8.1 87 16-132 60-148 (316)
66 COG1649 Uncharacterized protei 96.4 0.0087 1.9E-07 56.4 6.6 97 14-130 112-208 (418)
67 PRK11052 malQ 4-alpha-glucanot 96.2 0.034 7.3E-07 56.5 10.4 24 17-40 355-380 (695)
68 cd06602 GH31_MGAM_SI_GAA This 96.2 0.016 3.5E-07 54.0 7.3 35 98-132 132-166 (339)
69 cd06600 GH31_MGAM-like This fa 96.1 0.025 5.4E-07 52.2 8.0 36 97-132 126-161 (317)
70 PRK10658 putative alpha-glucos 96.1 0.021 4.5E-07 58.0 7.9 90 18-133 326-420 (665)
71 cd06598 GH31_transferase_CtsZ 96.0 0.025 5.4E-07 52.3 7.7 88 18-131 71-164 (317)
72 PRK14510 putative bifunctional 95.9 0.05 1.1E-06 59.0 10.4 29 17-46 932-962 (1221)
73 smart00632 Aamy_C Aamy_C domai 95.6 0.037 8.1E-07 39.9 5.5 37 304-340 6-48 (81)
74 PF01055 Glyco_hydro_31: Glyco 95.5 0.02 4.2E-07 55.5 5.0 98 18-133 84-182 (441)
75 cd06604 GH31_glucosidase_II_Ma 95.4 0.051 1.1E-06 50.7 7.4 33 98-131 127-159 (339)
76 cd06542 GH18_EndoS-like Endo-b 95.2 0.094 2E-06 46.8 8.2 63 16-129 50-112 (255)
77 COG1640 MalQ 4-alpha-glucanotr 95.1 0.17 3.6E-06 49.4 9.7 24 17-40 210-233 (520)
78 cd06595 GH31_xylosidase_XylS-l 95.0 0.062 1.3E-06 49.0 6.3 83 18-130 75-158 (292)
79 PF05913 DUF871: Bacterial pro 94.8 0.046 9.9E-07 51.1 5.1 27 16-42 46-72 (357)
80 COG1501 Alpha-glucosidases, fa 94.7 0.072 1.6E-06 54.8 6.6 95 10-133 317-417 (772)
81 PRK14507 putative bifunctional 94.6 0.091 2E-06 58.0 7.5 43 2-45 793-835 (1693)
82 PLN02763 hydrolase, hydrolyzin 94.3 0.092 2E-06 55.0 6.4 101 7-130 234-335 (978)
83 PRK10426 alpha-glucosidase; Pr 94.2 0.17 3.7E-06 51.2 8.0 90 18-133 270-365 (635)
84 COG3589 Uncharacterized conser 93.9 0.072 1.6E-06 48.4 4.1 26 16-41 48-73 (360)
85 cd06601 GH31_lyase_GLase GLase 93.8 0.22 4.8E-06 46.2 7.4 32 98-130 101-132 (332)
86 cd02875 GH18_chitobiase Chitob 93.8 0.15 3.1E-06 48.0 6.1 31 100-130 91-121 (358)
87 cd06545 GH18_3CO4_chitinase Th 93.0 0.47 1E-05 42.2 8.0 64 16-130 45-108 (253)
88 cd02871 GH18_chitinase_D-like 92.9 0.59 1.3E-05 43.1 8.7 62 15-130 58-119 (312)
89 cd06603 GH31_GANC_GANAB_alpha 92.6 0.39 8.6E-06 44.8 7.0 89 18-130 65-161 (339)
90 KOG1065 Maltase glucoamylase a 92.4 0.59 1.3E-05 47.6 8.3 99 10-130 347-447 (805)
91 COG3280 TreY Maltooligosyl tre 92.4 0.11 2.4E-06 52.0 3.1 42 3-45 55-96 (889)
92 cd06562 GH20_HexA_HexB-like Be 91.7 0.87 1.9E-05 42.6 8.3 81 15-121 68-149 (348)
93 PF02806 Alpha-amylase_C: Alph 91.7 0.43 9.2E-06 35.3 5.1 45 302-346 5-60 (95)
94 cd06570 GH20_chitobiase-like_1 91.5 0.65 1.4E-05 42.7 7.1 78 15-118 66-144 (311)
95 TIGR01370 cysRS possible cyste 91.0 0.83 1.8E-05 41.9 7.1 37 96-133 136-172 (315)
96 cd06563 GH20_chitobiase-like T 90.9 1.2 2.6E-05 41.9 8.3 80 15-120 84-164 (357)
97 PF14701 hDGE_amylase: glucano 90.9 0.55 1.2E-05 44.7 6.0 52 92-145 360-416 (423)
98 cd02742 GH20_hexosaminidase Be 90.7 0.36 7.7E-06 44.3 4.5 77 15-120 70-147 (303)
99 cd06564 GH20_DspB_LnbB-like Gl 90.4 0.62 1.3E-05 43.2 5.8 75 15-121 80-155 (326)
100 cd06589 GH31 The enzymes of gl 90.0 0.81 1.8E-05 41.1 6.1 22 18-39 67-88 (265)
101 cd06568 GH20_SpHex_like A subg 89.6 1.5 3.2E-05 40.8 7.6 80 15-120 73-153 (329)
102 PLN03236 4-alpha-glucanotransf 87.9 1.2 2.6E-05 45.6 6.2 29 17-46 274-302 (745)
103 PF00150 Cellulase: Cellulase 86.7 0.78 1.7E-05 41.1 3.8 25 16-40 61-85 (281)
104 KOG3625 Alpha amylase [Carbohy 86.5 0.43 9.3E-06 49.0 2.2 43 4-47 178-227 (1521)
105 COG2342 Predicted extracellula 86.3 9.9 0.00021 34.0 10.2 36 97-133 116-151 (300)
106 PF07745 Glyco_hydro_53: Glyco 85.8 2.1 4.6E-05 39.6 6.2 30 13-42 54-83 (332)
107 PF00728 Glyco_hydro_20: Glyco 85.6 0.95 2.1E-05 42.3 3.9 93 13-127 69-162 (351)
108 PLN02950 4-alpha-glucanotransf 84.3 2.6 5.6E-05 44.6 6.7 29 17-46 461-489 (909)
109 cd06565 GH20_GcnA-like Glycosy 84.1 2.8 6.2E-05 38.3 6.2 73 15-121 58-131 (301)
110 cd06569 GH20_Sm-chitobiase-lik 83.7 2.5 5.5E-05 40.9 5.9 30 15-44 95-125 (445)
111 cd02931 ER_like_FMN Enoate red 83.6 25 0.00054 33.4 12.6 28 16-45 82-110 (382)
112 PF00724 Oxidored_FMN: NADH:fl 83.2 16 0.00034 34.1 10.9 29 16-46 79-107 (341)
113 cd02874 GH18_CFLE_spore_hydrol 82.4 5.2 0.00011 36.7 7.3 31 101-131 83-113 (313)
114 cd04735 OYE_like_4_FMN Old yel 81.7 27 0.0006 32.7 12.0 29 16-46 77-105 (353)
115 cd00598 GH18_chitinase-like Th 80.6 10 0.00023 32.2 8.2 31 101-131 84-114 (210)
116 cd02929 TMADH_HD_FMN Trimethyl 80.5 40 0.00088 31.8 12.7 28 16-45 82-109 (370)
117 PF09260 DUF1966: Domain of un 78.9 4.5 9.7E-05 29.8 4.5 23 302-324 2-27 (91)
118 cd06547 GH85_ENGase Endo-beta- 77.0 2.6 5.7E-05 39.2 3.5 31 103-133 85-115 (339)
119 cd04734 OYE_like_3_FMN Old yel 76.9 57 0.0012 30.4 12.4 29 16-46 76-104 (343)
120 COG1306 Uncharacterized conser 76.8 10 0.00022 34.2 6.8 94 17-130 124-218 (400)
121 COG1902 NemA NADH:flavin oxido 76.5 53 0.0012 31.0 12.0 28 16-45 82-109 (363)
122 cd06546 GH18_CTS3_chitinase GH 76.2 21 0.00046 31.8 9.0 31 102-132 93-123 (256)
123 cd04733 OYE_like_2_FMN Old yel 75.3 48 0.001 30.8 11.5 28 16-45 81-108 (338)
124 PF01212 Beta_elim_lyase: Beta 74.5 3 6.6E-05 37.9 3.2 23 16-38 144-166 (290)
125 PF11852 DUF3372: Domain of un 74.4 2.3 5.1E-05 35.1 2.2 49 277-325 43-115 (168)
126 COG0520 csdA Selenocysteine ly 74.1 6.1 0.00013 37.8 5.3 53 6-59 169-223 (405)
127 PRK15452 putative protease; Pr 73.5 16 0.00034 35.5 7.9 24 15-40 44-67 (443)
128 cd04747 OYE_like_5_FMN Old yel 73.5 75 0.0016 30.0 12.2 28 16-45 77-104 (361)
129 PF10438 Cyc-maltodext_C: Cycl 73.0 4.7 0.0001 28.8 3.2 23 303-325 6-31 (78)
130 PLN02411 12-oxophytodienoate r 71.6 96 0.0021 29.6 12.8 29 16-46 86-114 (391)
131 cd02877 GH18_hevamine_XipI_cla 70.2 18 0.00038 32.8 7.0 20 17-36 59-78 (280)
132 PRK10605 N-ethylmaleimide redu 70.2 49 0.0011 31.2 10.3 29 16-46 78-106 (362)
133 PF01120 Alpha_L_fucos: Alpha- 69.9 26 0.00057 32.7 8.4 51 105-155 190-245 (346)
134 COG1242 Predicted Fe-S oxidore 69.0 24 0.00053 31.7 7.3 58 15-133 166-223 (312)
135 PF07555 NAGidase: beta-N-acet 68.9 20 0.00044 32.9 7.1 56 16-127 55-110 (306)
136 KOG2499 Beta-N-acetylhexosamin 68.5 29 0.00063 33.6 8.2 30 15-44 248-278 (542)
137 PRK14582 pgaB outer membrane N 67.2 24 0.00051 36.2 7.8 32 98-129 435-466 (671)
138 COG3867 Arabinogalactan endo-1 67.2 9.6 0.00021 34.4 4.5 24 16-39 103-126 (403)
139 PRK13523 NADPH dehydrogenase N 65.6 52 0.0011 30.7 9.3 28 16-45 80-107 (337)
140 cd00615 Orn_deC_like Ornithine 64.5 5.6 0.00012 36.1 2.7 28 11-38 164-191 (294)
141 PF01791 DeoC: DeoC/LacD famil 64.3 6.3 0.00014 34.6 2.9 25 16-40 111-135 (236)
142 COG1441 MenC O-succinylbenzoat 63.5 7.8 0.00017 33.6 3.1 30 10-39 237-266 (321)
143 PF13378 MR_MLE_C: Enolase C-t 62.7 3.1 6.8E-05 31.6 0.6 33 3-35 19-51 (111)
144 cd02932 OYE_YqiM_FMN Old yello 62.5 1.3E+02 0.0029 27.8 11.9 28 16-45 76-103 (336)
145 cd02933 OYE_like_FMN Old yello 61.6 66 0.0014 30.0 9.3 28 16-45 76-103 (338)
146 PF02449 Glyco_hydro_42: Beta- 61.5 13 0.00028 35.1 4.7 88 16-130 46-137 (374)
147 cd02803 OYE_like_FMN_family Ol 60.8 28 0.0006 32.1 6.7 29 16-46 76-104 (327)
148 TIGR03356 BGL beta-galactosida 60.4 26 0.00056 33.9 6.5 23 16-38 93-115 (427)
149 COG0134 TrpC Indole-3-glycerol 60.3 12 0.00026 33.2 3.8 22 16-37 142-163 (254)
150 COG0041 PurE Phosphoribosylcar 59.2 13 0.00028 30.1 3.4 24 14-37 41-64 (162)
151 COG1891 Uncharacterized protei 58.7 4.6 9.9E-05 33.4 0.9 24 14-37 164-187 (235)
152 PF15640 Tox-MPTase4: Metallop 57.9 12 0.00025 29.1 2.9 27 11-37 16-42 (132)
153 smart00812 Alpha_L_fucos Alpha 57.9 89 0.0019 29.7 9.5 47 103-149 172-226 (384)
154 cd02930 DCR_FMN 2,4-dienoyl-Co 57.5 1.7E+02 0.0036 27.4 12.3 28 16-45 76-103 (353)
155 cd07944 DRE_TIM_HOA_like 4-hyd 56.9 85 0.0018 28.1 8.9 38 107-145 138-176 (266)
156 PRK05939 hypothetical protein; 56.8 16 0.00035 34.9 4.4 29 11-39 142-170 (397)
157 PF14488 DUF4434: Domain of un 56.8 17 0.00038 30.0 4.1 28 14-41 62-89 (166)
158 PRK09028 cystathionine beta-ly 55.8 16 0.00036 34.8 4.3 30 11-40 157-186 (394)
159 PF01276 OKR_DC_1: Orn/Lys/Arg 55.1 4.2 9.1E-05 38.9 0.2 29 10-38 177-205 (417)
160 PF10566 Glyco_hydro_97: Glyco 54.5 38 0.00083 30.5 6.1 36 105-141 104-139 (273)
161 PRK05967 cystathionine beta-ly 54.5 16 0.00035 34.8 4.0 30 11-40 160-189 (395)
162 TIGR01928 menC_lowGC/arch o-su 54.0 14 0.00031 34.1 3.5 33 3-35 247-279 (324)
163 PRK05692 hydroxymethylglutaryl 53.1 86 0.0019 28.4 8.3 38 107-145 155-193 (287)
164 cd00308 enolase_like Enolase-s 53.0 19 0.00041 31.3 3.9 33 3-35 169-201 (229)
165 PRK08255 salicylyl-CoA 5-hydro 52.2 2.6E+02 0.0056 29.3 12.7 29 16-46 474-503 (765)
166 cd03174 DRE_TIM_metallolyase D 52.2 67 0.0015 28.3 7.5 39 107-146 146-185 (265)
167 PF01301 Glyco_hydro_35: Glyco 52.0 11 0.00023 34.9 2.3 26 15-40 61-86 (319)
168 TIGR01324 cysta_beta_ly_B cyst 51.9 21 0.00047 33.7 4.4 30 11-40 146-175 (377)
169 cd07938 DRE_TIM_HMGL 3-hydroxy 51.8 1E+02 0.0022 27.8 8.5 73 17-145 114-187 (274)
170 cd03315 MLE_like Muconate lact 51.5 16 0.00034 32.6 3.3 34 3-36 204-237 (265)
171 cd07940 DRE_TIM_IPMS 2-isoprop 51.0 1.1E+02 0.0024 27.2 8.7 38 107-145 143-181 (268)
172 cd06502 TA_like Low-specificit 49.8 19 0.00041 33.0 3.6 24 15-38 144-167 (338)
173 cd07937 DRE_TIM_PC_TC_5S Pyruv 49.5 1.4E+02 0.0031 26.8 9.1 40 107-147 149-189 (275)
174 PLN02509 cystathionine beta-ly 48.3 25 0.00054 34.4 4.3 29 11-39 228-256 (464)
175 PRK00278 trpC indole-3-glycero 48.3 24 0.00051 31.6 3.9 23 15-37 145-167 (260)
176 PRK13957 indole-3-glycerol-pho 48.1 24 0.00051 31.3 3.7 22 16-37 137-158 (247)
177 PRK07050 cystathionine beta-ly 48.0 24 0.00053 33.6 4.2 31 11-41 161-191 (394)
178 PRK08195 4-hyroxy-2-oxovalerat 47.9 1.2E+02 0.0026 28.3 8.6 38 107-145 144-182 (337)
179 cd03317 NAAAR N-acylamino acid 46.7 21 0.00045 33.4 3.4 33 3-35 252-284 (354)
180 PF00218 IGPS: Indole-3-glycer 46.7 25 0.00054 31.3 3.7 22 16-37 144-165 (254)
181 cd05014 SIS_Kpsf KpsF-like pro 46.4 23 0.00049 27.3 3.1 24 12-35 56-79 (128)
182 cd00614 CGS_like CGS_like: Cys 46.4 19 0.0004 33.9 3.1 29 11-39 136-164 (369)
183 cd06543 GH18_PF-ChiA-like PF-C 46.3 88 0.0019 28.5 7.3 20 16-35 53-72 (294)
184 TIGR01927 menC_gamma/gm+ o-suc 46.0 20 0.00043 32.9 3.1 33 4-36 231-263 (307)
185 cd04795 SIS SIS domain. SIS (S 45.8 24 0.00052 24.9 3.0 24 12-35 56-79 (87)
186 PRK08247 cystathionine gamma-s 45.5 31 0.00067 32.4 4.4 29 11-39 147-175 (366)
187 TIGR03217 4OH_2_O_val_ald 4-hy 45.4 1.4E+02 0.0031 27.7 8.6 38 107-145 143-181 (333)
188 cd06454 KBL_like KBL_like; thi 45.3 17 0.00036 33.6 2.5 29 11-39 143-171 (349)
189 PRK15029 arginine decarboxylas 45.1 17 0.00036 37.8 2.6 28 10-37 321-348 (755)
190 PF09196 DUF1953: Domain of un 45.1 16 0.00035 23.9 1.6 45 299-343 2-50 (66)
191 PRK07269 cystathionine gamma-s 44.9 20 0.00043 33.8 3.0 29 11-39 147-175 (364)
192 PLN02460 indole-3-glycerol-pho 44.8 28 0.00062 32.3 3.8 22 16-37 216-237 (338)
193 cd03320 OSBS o-Succinylbenzoat 44.8 23 0.0005 31.6 3.3 34 3-36 200-233 (263)
194 PF00682 HMGL-like: HMGL-like 44.6 1.4E+02 0.003 25.9 8.2 38 107-145 137-175 (237)
195 cd07939 DRE_TIM_NifV Streptomy 44.5 1.6E+02 0.0035 26.0 8.7 39 107-146 139-178 (259)
196 cd00609 AAT_like Aspartate ami 44.5 24 0.00052 32.2 3.5 28 15-42 150-177 (350)
197 PRK05968 hypothetical protein; 44.3 31 0.00068 32.7 4.3 29 11-39 158-186 (389)
198 cd03319 L-Ala-DL-Glu_epimerase 43.4 22 0.00048 32.6 3.0 34 3-36 252-285 (316)
199 COG1105 FruK Fructose-1-phosph 43.3 29 0.00062 31.9 3.6 23 16-38 145-167 (310)
200 COG1168 MalY Bifunctional PLP- 43.3 28 0.0006 32.7 3.5 22 15-36 176-197 (388)
201 cd06452 SepCysS Sep-tRNA:Cys-t 43.2 20 0.00044 33.4 2.8 30 11-40 150-179 (361)
202 TIGR01140 L_thr_O3P_dcar L-thr 43.2 25 0.00053 32.4 3.3 28 16-43 144-171 (330)
203 cd01494 AAT_I Aspartate aminot 42.7 17 0.00037 29.0 2.0 31 13-43 105-135 (170)
204 PRK09331 Sep-tRNA:Cys-tRNA syn 42.6 26 0.00056 33.2 3.4 30 11-40 169-198 (387)
205 cd00958 DhnA Class I fructose- 42.2 31 0.00068 30.0 3.7 23 17-39 109-131 (235)
206 PRK12581 oxaloacetate decarbox 41.8 1.3E+02 0.0028 29.4 8.0 41 105-146 161-202 (468)
207 PRK07811 cystathionine gamma-s 41.7 24 0.00051 33.6 3.0 30 11-40 157-186 (388)
208 COG3934 Endo-beta-mannanase [C 41.6 55 0.0012 31.8 5.2 34 13-46 62-98 (587)
209 TIGR01814 kynureninase kynuren 41.6 22 0.00047 33.9 2.8 30 8-38 180-209 (406)
210 cd05017 SIS_PGI_PMI_1 The memb 41.1 31 0.00066 26.5 3.0 25 11-35 51-75 (119)
211 TIGR01329 cysta_beta_ly_E cyst 41.1 24 0.00051 33.4 2.9 29 11-39 142-170 (378)
212 KOG2584 Dihydroorotase and rel 41.0 33 0.00071 32.8 3.6 85 16-131 85-169 (522)
213 PLN02651 cysteine desulfurase 40.9 25 0.00053 32.9 3.0 31 8-39 147-177 (364)
214 PRK00125 pyrF orotidine 5'-pho 40.8 30 0.00066 31.2 3.4 25 16-40 72-96 (278)
215 cd06548 GH18_chitinase The GH1 40.7 37 0.00081 31.3 4.1 29 101-129 105-133 (322)
216 PRK07812 O-acetylhomoserine am 40.7 25 0.00054 34.1 3.0 29 11-39 166-194 (436)
217 PF12905 Glyco_hydro_101: Endo 40.6 16 0.00034 34.7 1.5 36 3-39 82-117 (425)
218 PLN00145 tyrosine/nicotianamin 40.6 35 0.00076 32.9 4.0 28 16-43 209-236 (430)
219 cd00617 Tnase_like Tryptophana 40.5 33 0.00071 33.2 3.7 23 16-38 172-194 (431)
220 cd03318 MLE Muconate Lactonizi 40.0 28 0.00062 32.7 3.2 33 3-35 263-295 (365)
221 PRK08960 hypothetical protein; 39.9 38 0.00081 32.0 4.1 28 16-43 184-211 (387)
222 PRK04366 glycine dehydrogenase 39.9 34 0.00075 33.5 3.9 29 10-38 217-246 (481)
223 COG0826 Collagenase and relate 39.8 32 0.0007 32.2 3.5 24 15-38 47-70 (347)
224 cd02876 GH18_SI-CLP Stabilin-1 39.6 38 0.00082 31.1 3.9 29 101-129 88-116 (318)
225 COG0436 Aspartate/tyrosine/aro 39.4 33 0.00072 32.7 3.6 32 15-46 181-212 (393)
226 PRK15129 L-Ala-D/L-Glu epimera 39.4 29 0.00062 32.0 3.1 33 4-36 242-274 (321)
227 TIGR02539 SepCysS Sep-tRNA:Cys 39.2 30 0.00065 32.5 3.3 32 8-40 155-186 (370)
228 TIGR01325 O_suc_HS_sulf O-succ 39.1 26 0.00056 33.2 2.8 30 11-40 150-179 (380)
229 cd02879 GH18_plant_chitinase_c 39.1 38 0.00083 30.9 3.8 30 101-130 88-117 (299)
230 PLN03059 beta-galactosidase; P 39.0 30 0.00066 36.1 3.4 27 13-39 94-120 (840)
231 cd05013 SIS_RpiR RpiR-like pro 38.9 34 0.00073 26.4 3.1 24 12-35 69-92 (139)
232 cd06549 GH18_trifunctional GH1 38.9 40 0.00086 30.7 3.9 31 100-130 83-113 (298)
233 TIGR02127 pyrF_sub2 orotidine 38.6 37 0.0008 30.4 3.5 25 16-40 72-96 (261)
234 PHA00450 host dGTPase inhibito 38.5 52 0.0011 23.4 3.4 27 14-40 7-33 (85)
235 cd07943 DRE_TIM_HOA 4-hydroxy- 38.4 2.3E+02 0.005 25.2 8.7 39 107-146 141-180 (263)
236 PRK14012 cysteine desulfurase; 38.3 40 0.00087 32.0 4.0 29 11-39 155-183 (404)
237 COG3469 Chitinase [Carbohydrat 38.3 1.4E+02 0.0031 26.5 6.8 27 11-37 79-105 (332)
238 cd06596 GH31_CPE1046 CPE1046 i 38.2 36 0.00077 30.4 3.3 32 1-33 59-91 (261)
239 TIGR01437 selA_rel uncharacter 38.1 28 0.0006 32.7 2.8 29 12-40 161-189 (363)
240 smart00636 Glyco_18 Glycosyl h 37.9 43 0.00094 30.9 4.1 30 101-130 87-116 (334)
241 PRK13237 tyrosine phenol-lyase 37.8 37 0.00081 33.0 3.6 23 16-38 197-219 (460)
242 PRK07324 transaminase; Validat 37.8 44 0.00096 31.4 4.2 28 15-42 171-198 (373)
243 PLN00175 aminotransferase fami 37.7 43 0.00093 32.0 4.1 28 16-43 206-233 (413)
244 TIGR01265 tyr_nico_aTase tyros 37.5 44 0.00096 31.7 4.2 32 12-43 181-215 (403)
245 PF02679 ComA: (2R)-phospho-3- 37.5 1.1E+02 0.0025 27.0 6.3 49 106-155 83-134 (244)
246 PRK08776 cystathionine gamma-s 37.5 30 0.00064 33.1 3.0 30 11-40 156-185 (405)
247 PRK05367 glycine dehydrogenase 37.5 25 0.00054 37.7 2.6 31 10-40 215-245 (954)
248 PRK05958 8-amino-7-oxononanoat 37.4 29 0.00062 32.5 2.8 29 11-39 179-207 (385)
249 PF00704 Glyco_hydro_18: Glyco 37.2 42 0.00092 30.8 3.9 33 102-134 96-128 (343)
250 KOG0259 Tyrosine aminotransfer 37.1 33 0.00071 32.3 2.9 32 15-46 217-248 (447)
251 PF00266 Aminotran_5: Aminotra 37.1 17 0.00038 34.0 1.3 32 6-38 146-177 (371)
252 TIGR03849 arch_ComA phosphosul 37.0 1.8E+02 0.0039 25.6 7.4 50 105-155 69-121 (237)
253 cd07945 DRE_TIM_CMS Leptospira 37.0 2.7E+02 0.0058 25.1 8.9 38 107-145 147-185 (280)
254 cd05008 SIS_GlmS_GlmD_1 SIS (S 36.8 38 0.00082 26.0 3.0 24 12-35 55-78 (126)
255 PRK07568 aspartate aminotransf 36.7 39 0.00085 31.9 3.6 29 15-43 180-208 (397)
256 COG1103 Archaea-specific pyrid 36.6 36 0.00078 30.6 3.0 34 5-39 162-195 (382)
257 cd03322 rpsA The starvation se 36.5 39 0.00085 31.7 3.6 33 3-35 238-270 (361)
258 PRK07777 aminotransferase; Val 36.3 46 0.001 31.3 4.1 28 16-43 178-205 (387)
259 PRK15447 putative protease; Pr 36.0 41 0.00089 30.8 3.5 21 15-35 46-66 (301)
260 PTZ00376 aspartate aminotransf 36.0 44 0.00095 31.8 3.9 30 15-44 194-223 (404)
261 PRK08134 O-acetylhomoserine am 36.0 32 0.0007 33.3 2.9 29 11-39 160-188 (433)
262 PRK07671 cystathionine beta-ly 35.8 35 0.00076 32.3 3.1 30 11-40 145-174 (377)
263 cd08577 PI-PLCc_GDPD_SF_unchar 35.6 43 0.00093 29.3 3.4 20 16-35 184-203 (228)
264 PLN02746 hydroxymethylglutaryl 35.4 2.8E+02 0.0061 26.0 8.9 38 107-145 197-235 (347)
265 PRK07810 O-succinylhomoserine 35.4 34 0.00073 32.7 3.0 30 11-40 166-195 (403)
266 TIGR01822 2am3keto_CoA 2-amino 35.4 35 0.00075 32.2 3.0 29 11-39 181-209 (393)
267 PF07894 DUF1669: Protein of u 35.3 35 0.00075 30.8 2.8 23 16-39 136-158 (284)
268 PLN02656 tyrosine transaminase 35.3 42 0.00091 32.0 3.6 28 16-43 188-215 (409)
269 TIGR00474 selA seryl-tRNA(sec) 35.2 28 0.0006 34.0 2.3 23 15-37 230-252 (454)
270 PRK06939 2-amino-3-ketobutyrat 35.2 35 0.00075 32.1 3.0 30 11-40 185-214 (397)
271 PF02347 GDC-P: Glycine cleava 35.2 34 0.00073 33.0 2.8 26 10-35 206-231 (429)
272 TIGR00858 bioF 8-amino-7-oxono 35.1 29 0.00063 32.0 2.4 28 12-39 158-185 (360)
273 TIGR02618 tyr_phenol_ly tyrosi 35.0 45 0.00097 32.4 3.7 23 16-38 190-212 (450)
274 PF01565 FAD_binding_4: FAD bi 34.8 52 0.0011 25.8 3.6 21 15-35 9-29 (139)
275 cd02872 GH18_chitolectin_chito 34.8 47 0.001 31.1 3.8 29 101-129 92-120 (362)
276 PRK14017 galactonate dehydrata 34.8 47 0.001 31.5 3.8 33 3-35 252-284 (382)
277 TIGR01976 am_tr_V_VC1184 cyste 34.7 35 0.00075 32.2 2.9 30 8-38 165-194 (397)
278 PRK08064 cystathionine beta-ly 34.6 38 0.00082 32.2 3.1 29 11-39 149-177 (390)
279 PRK08133 O-succinylhomoserine 34.5 37 0.0008 32.3 3.1 30 11-40 157-186 (390)
280 PRK06348 aspartate aminotransf 34.5 48 0.0011 31.2 3.9 29 15-43 180-208 (384)
281 PRK08056 threonine-phosphate d 34.5 51 0.0011 30.7 4.0 29 15-43 160-188 (356)
282 cd05710 SIS_1 A subgroup of th 34.5 46 0.001 25.6 3.1 24 12-35 56-79 (120)
283 cd03316 MR_like Mandelate race 34.4 47 0.001 31.0 3.7 33 3-35 264-296 (357)
284 TIGR02006 IscS cysteine desulf 34.3 36 0.00077 32.4 3.0 29 11-39 153-181 (402)
285 PRK06108 aspartate aminotransf 34.1 43 0.00093 31.3 3.5 29 15-43 176-204 (382)
286 PRK07503 methionine gamma-lyas 34.0 36 0.00077 32.6 2.9 30 11-40 161-190 (403)
287 TIGR03392 FeS_syn_CsdA cystein 34.0 32 0.00068 32.6 2.5 32 7-39 165-196 (398)
288 PRK09082 methionine aminotrans 33.9 41 0.00089 31.7 3.3 33 11-43 174-209 (386)
289 cd06450 DOPA_deC_like DOPA dec 33.8 33 0.00073 31.5 2.6 31 11-41 159-189 (345)
290 PRK13238 tnaA tryptophanase/L- 33.7 48 0.001 32.4 3.7 23 15-37 196-218 (460)
291 PRK05764 aspartate aminotransf 33.7 46 0.001 31.3 3.6 27 16-42 183-209 (393)
292 TIGR03127 RuMP_HxlB 6-phospho 33.7 46 0.001 27.5 3.2 24 12-35 81-104 (179)
293 TIGR01328 met_gam_lyase methio 33.6 41 0.00088 32.0 3.2 30 11-40 155-184 (391)
294 cd06453 SufS_like Cysteine des 33.5 36 0.00077 31.8 2.8 29 11-39 150-178 (373)
295 TIGR03235 DNA_S_dndA cysteine 33.5 37 0.0008 31.5 2.8 33 11-43 149-183 (353)
296 PRK08175 aminotransferase; Val 33.4 46 0.001 31.5 3.5 29 15-43 182-210 (395)
297 PRK06225 aspartate aminotransf 33.4 48 0.001 31.1 3.6 25 16-40 176-200 (380)
298 PRK07582 cystathionine gamma-l 33.2 43 0.00094 31.5 3.3 29 11-39 143-171 (366)
299 KOG0053 Cystathionine beta-lya 33.2 38 0.00083 32.3 2.8 30 11-40 173-202 (409)
300 TIGR02171 Fb_sc_TIGR02171 Fibr 33.0 53 0.0011 34.6 4.0 28 16-43 807-834 (912)
301 PRK05957 aspartate aminotransf 33.0 55 0.0012 30.9 4.0 33 11-43 171-206 (389)
302 TIGR03539 DapC_actino succinyl 32.9 47 0.001 30.9 3.5 29 15-43 160-188 (357)
303 PRK13520 L-tyrosine decarboxyl 32.9 32 0.0007 32.0 2.4 29 11-39 162-190 (371)
304 TIGR00666 PBP4 D-alanyl-D-alan 32.9 92 0.002 29.1 5.4 35 9-45 64-99 (345)
305 PF03711 OKR_DC_1_C: Orn/Lys/A 32.8 30 0.00064 27.6 1.8 33 262-294 87-122 (136)
306 PRK11658 UDP-4-amino-4-deoxy-L 32.8 33 0.00072 32.4 2.4 30 12-41 130-159 (379)
307 PLN02721 threonine aldolase 32.7 51 0.0011 30.4 3.6 24 16-39 157-180 (353)
308 PRK06176 cystathionine gamma-s 32.5 42 0.00091 31.8 3.0 30 11-40 145-174 (380)
309 PF04914 DltD_C: DltD C-termin 32.4 67 0.0014 25.4 3.7 24 16-39 35-58 (130)
310 TIGR01264 tyr_amTase_E tyrosin 32.4 51 0.0011 31.2 3.7 28 16-43 187-214 (401)
311 PLN02368 alanine transaminase 32.2 62 0.0013 31.0 4.2 30 15-44 228-257 (407)
312 TIGR01210 conserved hypothetic 32.1 60 0.0013 29.9 3.9 31 8-40 148-178 (313)
313 cd03325 D-galactonate_dehydrat 32.0 48 0.001 31.0 3.4 32 3-34 251-282 (352)
314 PRK01278 argD acetylornithine 32.0 66 0.0014 30.3 4.3 29 15-43 194-222 (389)
315 PF04343 DUF488: Protein of un 32.0 56 0.0012 25.2 3.2 26 19-44 2-27 (122)
316 KOG4730 D-arabinono-1, 4-lacto 31.8 51 0.0011 31.8 3.4 27 15-42 58-84 (518)
317 PRK08248 O-acetylhomoserine am 31.4 47 0.001 32.1 3.2 29 11-39 160-188 (431)
318 PRK08249 cystathionine gamma-s 31.3 43 0.00094 31.9 3.0 30 11-40 160-189 (398)
319 cd00378 SHMT Serine-glycine hy 31.2 40 0.00087 31.9 2.7 28 11-38 170-197 (402)
320 TIGR00461 gcvP glycine dehydro 31.1 43 0.00093 35.7 3.1 37 10-46 637-676 (939)
321 TIGR03812 tyr_de_CO2_Arch tyro 31.1 34 0.00075 31.8 2.2 29 11-39 164-192 (373)
322 cd02878 GH18_zymocin_alpha Zym 31.1 59 0.0013 30.3 3.8 29 102-130 88-116 (345)
323 PLN02187 rooty/superroot1 31.0 58 0.0013 31.8 3.8 28 16-43 223-250 (462)
324 PF09081 DUF1921: Domain of un 31.0 1.4E+02 0.0031 18.9 5.2 42 307-348 5-51 (51)
325 KOG0496 Beta-galactosidase [Ca 31.0 48 0.0011 33.4 3.2 29 12-40 83-111 (649)
326 PRK05105 O-succinylbenzoate sy 31.0 54 0.0012 30.3 3.5 33 4-36 232-264 (322)
327 PRK08861 cystathionine gamma-s 31.0 45 0.00098 31.7 3.0 32 8-40 147-178 (388)
328 cd07941 DRE_TIM_LeuA3 Desulfob 30.8 3.2E+02 0.007 24.4 8.4 38 107-145 151-189 (273)
329 PF10922 DUF2745: Protein of u 30.8 78 0.0017 22.7 3.3 24 14-37 7-30 (85)
330 TIGR02326 transamin_PhnW 2-ami 30.7 38 0.00082 31.5 2.5 28 11-38 140-167 (363)
331 PRK05942 aspartate aminotransf 30.7 54 0.0012 31.0 3.5 28 16-43 189-216 (394)
332 TIGR01979 sufS cysteine desulf 30.6 41 0.00088 31.8 2.7 31 8-39 168-198 (403)
333 PLN02242 methionine gamma-lyas 30.5 51 0.0011 31.7 3.3 29 11-39 174-202 (418)
334 cd03321 mandelate_racemase Man 30.2 44 0.00096 31.3 2.8 32 3-34 261-292 (355)
335 PRK07683 aminotransferase A; V 30.1 56 0.0012 30.8 3.5 28 15-42 179-206 (387)
336 COG2730 BglC Endoglucanase [Ca 30.0 48 0.001 31.8 3.0 21 18-38 117-137 (407)
337 TIGR03531 selenium_SpcS O-phos 29.9 55 0.0012 31.8 3.4 28 15-42 220-247 (444)
338 PRK09295 bifunctional cysteine 29.9 43 0.00092 31.8 2.7 32 7-39 172-203 (406)
339 PRK10874 cysteine sulfinate de 29.8 44 0.00096 31.6 2.8 32 7-39 168-199 (401)
340 TIGR00288 conserved hypothetic 29.7 57 0.0012 26.8 3.0 23 15-37 114-136 (160)
341 PLN02855 Bifunctional selenocy 29.7 43 0.00092 32.1 2.7 32 7-39 181-212 (424)
342 COG0821 gcpE 1-hydroxy-2-methy 29.7 48 0.001 30.6 2.7 39 4-44 97-135 (361)
343 PRK08574 cystathionine gamma-s 29.6 48 0.001 31.5 2.9 29 11-39 148-176 (385)
344 PF01380 SIS: SIS domain SIS d 29.5 62 0.0014 24.7 3.2 21 13-33 63-83 (131)
345 PRK06084 O-acetylhomoserine am 29.5 47 0.001 32.0 2.9 30 11-40 154-183 (425)
346 cd00616 AHBA_syn 3-amino-5-hyd 29.5 42 0.00092 30.9 2.5 30 11-40 114-143 (352)
347 PRK04311 selenocysteine syntha 29.4 39 0.00085 33.0 2.3 24 14-37 234-257 (464)
348 PRK00468 hypothetical protein; 29.4 85 0.0018 22.2 3.4 23 16-38 52-75 (75)
349 PRK05994 O-acetylhomoserine am 29.4 50 0.0011 31.9 3.0 30 11-40 159-188 (427)
350 PRK07337 aminotransferase; Val 29.4 77 0.0017 29.8 4.3 28 16-43 182-209 (388)
351 PRK11706 TDP-4-oxo-6-deoxy-D-g 29.4 48 0.0011 31.2 2.9 32 12-43 128-159 (375)
352 PLN00143 tyrosine/nicotianamin 29.3 69 0.0015 30.6 4.0 28 16-43 189-216 (409)
353 TIGR03301 PhnW-AepZ 2-aminoeth 29.3 66 0.0014 29.6 3.8 28 11-38 136-163 (355)
354 PRK09257 aromatic amino acid a 29.2 72 0.0016 30.2 4.1 30 15-44 190-219 (396)
355 PF04476 DUF556: Protein of un 29.1 42 0.00092 29.3 2.2 22 15-36 165-186 (235)
356 TIGR03588 PseC UDP-4-keto-6-de 29.1 41 0.0009 31.6 2.4 30 12-41 130-159 (380)
357 PRK09427 bifunctional indole-3 29.1 65 0.0014 31.4 3.7 22 16-37 145-166 (454)
358 PRK07504 O-succinylhomoserine 28.8 45 0.00097 31.8 2.6 30 11-40 161-190 (398)
359 PRK00077 eno enolase; Provisio 28.8 64 0.0014 31.2 3.6 40 3-46 329-368 (425)
360 TIGR01825 gly_Cac_T_rel pyrido 28.7 51 0.0011 30.9 2.9 31 11-41 174-204 (385)
361 cd04726 KGPDC_HPS 3-Keto-L-gul 28.7 82 0.0018 26.5 4.0 28 15-42 88-115 (202)
362 TIGR02379 ECA_wecE TDP-4-keto- 28.6 48 0.001 31.3 2.7 33 11-43 127-159 (376)
363 TIGR02617 tnaA_trp_ase tryptop 28.6 64 0.0014 31.4 3.5 23 16-38 203-225 (467)
364 PLN02397 aspartate transaminas 28.5 79 0.0017 30.4 4.2 30 15-44 212-241 (423)
365 cd03327 MR_like_2 Mandelate ra 28.4 62 0.0013 30.1 3.4 33 3-35 246-278 (341)
366 PRK02227 hypothetical protein; 28.4 49 0.0011 29.1 2.5 21 15-35 165-185 (238)
367 PRK06767 methionine gamma-lyas 28.4 53 0.0011 31.1 3.0 30 11-40 157-186 (386)
368 PRK10534 L-threonine aldolase; 28.4 65 0.0014 29.5 3.6 23 16-38 146-168 (333)
369 cd00613 GDC-P Glycine cleavage 28.1 53 0.0011 30.9 3.0 26 13-38 171-197 (398)
370 PRK12414 putative aminotransfe 28.1 60 0.0013 30.6 3.3 28 16-43 181-208 (384)
371 PTZ00433 tyrosine aminotransfe 28.0 75 0.0016 30.3 4.0 33 11-43 188-223 (412)
372 cd03313 enolase Enolase: Enola 28.0 75 0.0016 30.5 3.9 40 3-46 329-368 (408)
373 TIGR01326 OAH_OAS_sulfhy OAH/O 28.0 55 0.0012 31.4 3.1 29 11-39 153-181 (418)
374 TIGR03540 DapC_direct LL-diami 28.0 62 0.0013 30.4 3.4 28 16-43 183-210 (383)
375 PRK12566 glycine dehydrogenase 28.0 58 0.0012 34.8 3.3 28 11-38 651-679 (954)
376 PF03537 Glyco_hydro_114: Glyc 27.9 52 0.0011 23.0 2.2 32 3-39 27-58 (74)
377 PRK06207 aspartate aminotransf 27.9 79 0.0017 30.1 4.1 28 16-43 197-224 (405)
378 TIGR03537 DapC succinyldiamino 27.8 83 0.0018 29.1 4.2 32 11-42 147-181 (350)
379 PRK08912 hypothetical protein; 27.8 60 0.0013 30.6 3.3 27 16-42 178-204 (387)
380 PF01041 DegT_DnrJ_EryC1: DegT 27.7 49 0.0011 31.0 2.6 33 11-43 121-153 (363)
381 PRK05613 O-acetylhomoserine am 27.5 54 0.0012 31.8 2.9 29 12-40 167-195 (437)
382 PRK09276 LL-diaminopimelate am 27.5 66 0.0014 30.2 3.5 28 16-43 185-212 (385)
383 PRK09148 aminotransferase; Val 27.3 67 0.0015 30.5 3.5 29 15-43 183-211 (405)
384 TIGR01977 am_tr_V_EF2568 cyste 27.1 54 0.0012 30.5 2.8 29 11-39 148-176 (376)
385 COG3345 GalA Alpha-galactosida 27.1 90 0.002 31.0 4.2 42 18-59 356-399 (687)
386 cd02873 GH18_IDGF The IDGF's ( 27.1 77 0.0017 30.4 3.9 28 101-128 101-128 (413)
387 PRK05839 hypothetical protein; 27.1 75 0.0016 29.8 3.8 28 16-43 174-201 (374)
388 PRK11113 D-alanyl-D-alanine ca 27.0 1.2E+02 0.0027 29.7 5.3 36 9-46 108-144 (477)
389 PF13653 GDPD_2: Glycerophosph 27.0 80 0.0017 17.9 2.4 18 111-129 11-28 (30)
390 PF14307 Glyco_tran_WbsX: Glyc 27.0 3.2E+02 0.0069 25.4 7.9 38 99-140 53-90 (345)
391 cd06451 AGAT_like Alanine-glyo 27.0 62 0.0013 29.9 3.2 28 11-38 135-162 (356)
392 PLN02822 serine palmitoyltrans 26.9 59 0.0013 31.9 3.1 31 11-41 256-286 (481)
393 PLN02483 serine palmitoyltrans 26.9 52 0.0011 32.4 2.7 29 11-39 251-279 (489)
394 PTZ00445 p36-lilke protein; Pr 26.7 72 0.0016 27.6 3.1 19 17-35 78-96 (219)
395 cd05005 SIS_PHI Hexulose-6-pho 26.7 72 0.0016 26.4 3.2 24 12-35 84-107 (179)
396 TIGR03402 FeS_nifS cysteine de 26.7 51 0.0011 30.9 2.6 29 11-39 147-175 (379)
397 PTZ00081 enolase; Provisional 26.7 74 0.0016 30.9 3.6 40 3-46 349-388 (439)
398 smart00052 EAL Putative diguan 26.6 47 0.001 28.5 2.2 39 2-41 168-214 (241)
399 cd01171 YXKO-related B.subtili 26.6 61 0.0013 28.5 2.9 32 6-38 81-112 (254)
400 PRK15407 lipopolysaccharide bi 26.6 72 0.0016 30.9 3.6 33 11-43 167-199 (438)
401 PF10096 DUF2334: Uncharacteri 26.6 1.1E+02 0.0024 26.9 4.5 37 7-45 8-44 (243)
402 COG0269 SgbH 3-hexulose-6-phos 26.5 1.2E+02 0.0026 26.2 4.5 107 15-157 91-197 (217)
403 COG0403 GcvP Glycine cleavage 26.5 75 0.0016 30.5 3.5 28 10-37 219-247 (450)
404 PRK05937 8-amino-7-oxononanoat 26.5 61 0.0013 30.4 3.0 33 7-40 151-183 (370)
405 PRK09250 fructose-bisphosphate 26.4 64 0.0014 30.1 3.0 21 16-36 178-198 (348)
406 cd01830 XynE_like SGNH_hydrola 26.3 75 0.0016 26.8 3.3 20 16-35 105-124 (204)
407 TIGR00461 gcvP glycine dehydro 26.3 50 0.0011 35.3 2.5 33 10-42 203-235 (939)
408 cd07354 HN_L-delphilin-R1_like 26.3 36 0.00078 24.2 1.1 46 102-147 19-64 (80)
409 PRK06358 threonine-phosphate d 26.3 88 0.0019 29.1 4.1 29 15-43 159-187 (354)
410 TIGR03542 DAPAT_plant LL-diami 26.1 74 0.0016 30.2 3.6 28 16-43 192-219 (402)
411 PRK09265 aminotransferase AlaT 26.1 77 0.0017 30.0 3.7 29 15-43 186-214 (404)
412 PRK08363 alanine aminotransfer 26.0 63 0.0014 30.6 3.1 29 15-43 184-212 (398)
413 PRK08057 cobalt-precorrin-6x r 25.8 75 0.0016 28.2 3.3 24 11-37 49-72 (248)
414 TIGR00106 uncharacterized prot 25.8 1.1E+02 0.0025 22.7 3.8 29 14-42 46-79 (97)
415 COG0148 Eno Enolase [Carbohydr 25.8 79 0.0017 29.9 3.5 34 10-47 335-368 (423)
416 TIGR02080 O_succ_thio_ly O-suc 25.7 60 0.0013 30.7 2.8 30 11-40 147-176 (382)
417 TIGR02534 mucon_cyclo muconate 25.6 74 0.0016 29.9 3.4 32 3-34 262-293 (368)
418 TIGR01162 purE phosphoribosyla 25.5 92 0.002 25.5 3.4 24 14-37 37-60 (156)
419 TIGR00441 gmhA phosphoheptose 25.5 78 0.0017 25.6 3.1 24 12-35 88-111 (154)
420 PRK06107 aspartate aminotransf 25.5 72 0.0016 30.3 3.4 32 11-42 177-212 (402)
421 TIGR00612 ispG_gcpE 1-hydroxy- 25.4 76 0.0016 29.4 3.2 36 7-44 98-133 (346)
422 PLN03227 serine palmitoyltrans 25.3 69 0.0015 30.4 3.2 29 12-40 150-178 (392)
423 PRK07865 N-succinyldiaminopime 25.2 88 0.0019 29.1 3.9 29 15-43 166-194 (364)
424 PRK00011 glyA serine hydroxyme 25.2 64 0.0014 30.7 3.0 28 11-38 174-201 (416)
425 COG2200 Rtn c-di-GMP phosphodi 25.2 1E+02 0.0022 27.3 4.1 25 16-40 192-216 (256)
426 PF01053 Cys_Met_Meta_PP: Cys/ 25.2 68 0.0015 30.5 3.1 28 12-39 152-180 (386)
427 PRK08354 putative aminotransfe 25.2 77 0.0017 28.8 3.4 29 15-43 135-163 (311)
428 TIGR03403 nifS_epsilon cystein 25.0 65 0.0014 30.2 2.9 28 11-38 151-178 (382)
429 PLN02379 pfkB-type carbohydrat 25.0 82 0.0018 29.7 3.6 24 15-38 189-212 (367)
430 PRK08227 autoinducer 2 aldolas 24.8 86 0.0019 28.1 3.5 20 16-35 126-145 (264)
431 PRK06460 hypothetical protein; 24.8 75 0.0016 30.0 3.3 29 11-39 141-169 (376)
432 PRK06702 O-acetylhomoserine am 24.6 59 0.0013 31.5 2.6 24 17-40 164-187 (432)
433 PRK08573 phosphomethylpyrimidi 24.6 91 0.002 30.3 3.9 33 12-44 79-111 (448)
434 PRK12858 tagatose 1,6-diphosph 24.5 92 0.002 29.1 3.7 24 16-39 142-165 (340)
435 PRK07550 hypothetical protein; 24.4 82 0.0018 29.6 3.5 28 15-42 181-208 (386)
436 TIGR03576 pyridox_MJ0158 pyrid 24.4 80 0.0017 29.4 3.4 25 16-40 154-178 (346)
437 PLN02414 glycine dehydrogenase 24.4 69 0.0015 34.5 3.2 28 11-38 677-704 (993)
438 PF15614 WHIM3: WSTF, HB1, Itc 24.4 51 0.0011 20.9 1.4 19 14-32 5-24 (46)
439 PRK10886 DnaA initiator-associ 24.4 84 0.0018 26.8 3.2 24 12-35 118-141 (196)
440 PRK07681 aspartate aminotransf 24.3 83 0.0018 29.8 3.6 29 15-43 184-212 (399)
441 TIGR03128 RuMP_HxlA 3-hexulose 24.3 1E+02 0.0022 26.1 3.8 22 16-37 88-109 (206)
442 TIGR01502 B_methylAsp_ase meth 24.1 95 0.0021 29.8 3.8 34 3-36 321-354 (408)
443 PLN00191 enolase 24.0 92 0.002 30.4 3.7 39 4-46 362-400 (457)
444 PRK08068 transaminase; Reviewe 24.0 83 0.0018 29.6 3.5 27 16-42 186-212 (389)
445 cd03329 MR_like_4 Mandelate ra 23.9 99 0.0021 29.1 3.9 33 3-35 265-297 (368)
446 cd07948 DRE_TIM_HCS Saccharomy 23.8 5.2E+02 0.011 23.0 8.9 39 107-146 141-180 (262)
447 TIGR01060 eno phosphopyruvate 23.8 88 0.0019 30.2 3.6 40 3-46 330-369 (425)
448 PRK13307 bifunctional formalde 23.7 1.1E+02 0.0024 29.2 4.1 30 13-42 259-288 (391)
449 TIGR01821 5aminolev_synth 5-am 23.6 74 0.0016 30.1 3.1 30 11-40 188-217 (402)
450 cd03328 MR_like_3 Mandelate ra 23.6 80 0.0017 29.5 3.2 33 3-35 259-291 (352)
451 PF07021 MetW: Methionine bios 23.6 1.9E+02 0.0041 24.6 5.1 38 2-43 134-172 (193)
452 cd03323 D-glucarate_dehydratas 23.6 91 0.002 29.7 3.6 33 3-35 285-317 (395)
453 PRK07309 aromatic amino acid a 23.5 91 0.002 29.4 3.6 29 15-43 184-212 (391)
454 cd08571 GDPD_SHV3_plant Glycer 23.4 65 0.0014 29.4 2.5 16 20-35 241-256 (302)
455 PRK13802 bifunctional indole-3 23.3 96 0.0021 32.0 3.9 22 16-37 146-167 (695)
456 PRK13355 bifunctional HTH-doma 23.2 88 0.0019 31.0 3.6 29 15-43 299-327 (517)
457 cd08580 GDPD_Rv2277c_like Glyc 23.2 71 0.0015 28.6 2.7 16 20-35 219-235 (263)
458 TIGR02826 RNR_activ_nrdG3 anae 23.2 92 0.002 25.1 3.1 20 17-36 75-94 (147)
459 TIGR01212 radical SAM protein, 23.0 1.1E+02 0.0025 27.8 4.1 28 15-42 161-188 (302)
460 cd08560 GDPD_EcGlpQ_like_1 Gly 23.0 71 0.0015 30.0 2.7 17 19-35 280-296 (356)
461 PRK05664 threonine-phosphate d 23.0 98 0.0021 28.4 3.7 26 15-40 142-167 (330)
462 PRK08636 aspartate aminotransf 23.0 94 0.002 29.5 3.7 29 15-43 193-221 (403)
463 PRK02948 cysteine desulfurase; 23.0 79 0.0017 29.6 3.1 30 8-38 147-176 (381)
464 PRK05093 argD bifunctional N-s 22.9 1.1E+02 0.0024 29.0 4.1 31 15-45 203-233 (403)
465 PTZ00094 serine hydroxymethylt 22.7 70 0.0015 31.0 2.7 28 11-38 191-218 (452)
466 PRK15072 bifunctional D-altron 22.7 98 0.0021 29.6 3.7 33 3-35 281-313 (404)
467 PF02113 Peptidase_S13: D-Ala- 22.7 82 0.0018 30.6 3.2 35 11-46 92-127 (444)
468 TIGR02660 nifV_homocitr homoci 22.7 6.2E+02 0.013 23.8 9.0 38 107-145 142-180 (365)
469 PRK08045 cystathionine gamma-s 22.7 77 0.0017 30.1 2.9 30 11-40 148-177 (386)
470 cd08555 PI-PLCc_GDPD_SF Cataly 22.7 79 0.0017 26.2 2.7 17 19-35 138-154 (179)
471 PRK13937 phosphoheptose isomer 22.6 94 0.002 26.1 3.2 25 11-35 114-138 (188)
472 PF02110 HK: Hydroxyethylthiaz 22.6 1E+02 0.0023 27.3 3.5 26 16-41 65-90 (246)
473 PRK07682 hypothetical protein; 22.6 95 0.0021 29.0 3.6 28 16-43 173-200 (378)
474 PRK13393 5-aminolevulinate syn 22.5 97 0.0021 29.4 3.6 29 11-39 188-216 (406)
475 PRK08114 cystathionine beta-ly 22.4 71 0.0015 30.5 2.6 29 11-39 158-188 (395)
476 cd05006 SIS_GmhA Phosphoheptos 22.4 92 0.002 25.7 3.1 24 12-35 110-133 (177)
477 PF03644 Glyco_hydro_85: Glyco 22.4 53 0.0012 30.2 1.7 19 21-39 46-64 (311)
478 PF03198 Glyco_hydro_72: Gluca 22.3 72 0.0016 29.3 2.5 36 6-46 73-108 (314)
479 PRK13479 2-aminoethylphosphona 22.2 80 0.0017 29.4 2.9 32 11-43 142-173 (368)
480 PF14542 Acetyltransf_CG: GCN5 22.2 1.1E+02 0.0023 21.6 2.9 30 5-35 27-60 (78)
481 PF02571 CbiJ: Precorrin-6x re 22.1 1E+02 0.0022 27.4 3.4 24 11-37 50-73 (249)
482 PRK13125 trpA tryptophan synth 22.0 1.1E+02 0.0024 26.9 3.6 26 15-40 114-139 (244)
483 PF07287 DUF1446: Protein of u 21.9 88 0.0019 29.5 3.0 21 16-36 57-77 (362)
484 PRK00414 gmhA phosphoheptose i 21.9 95 0.002 26.2 3.0 25 11-35 119-143 (192)
485 cd00610 OAT_like Acetyl ornith 21.9 1E+02 0.0022 29.1 3.6 28 15-42 210-237 (413)
486 TIGR03368 cellulose_yhjU cellu 21.9 1.2E+02 0.0026 29.7 3.9 29 16-44 379-407 (518)
487 COG0626 MetC Cystathionine bet 21.8 80 0.0017 30.2 2.8 30 11-40 160-189 (396)
488 PLN02231 alanine transaminase 21.5 1.1E+02 0.0023 30.6 3.8 30 15-44 289-318 (534)
489 PRK11596 cyclic-di-GMP phospho 21.4 1E+02 0.0022 27.2 3.3 38 2-40 174-219 (255)
490 PRK13938 phosphoheptose isomer 21.4 1E+02 0.0022 26.3 3.1 24 12-35 122-145 (196)
491 TIGR03470 HpnH hopanoid biosyn 21.3 4.6E+02 0.01 24.0 7.7 21 107-128 178-198 (318)
492 PF12683 DUF3798: Protein of u 21.1 2.9E+02 0.0063 24.8 5.9 54 102-158 180-233 (275)
493 PRK00366 ispG 4-hydroxy-3-meth 20.8 1.1E+02 0.0023 28.7 3.3 36 7-44 106-142 (360)
494 PTZ00377 alanine aminotransfer 20.8 92 0.002 30.5 3.1 29 15-43 236-264 (481)
495 PLN02450 1-aminocyclopropane-1 20.7 1.1E+02 0.0024 29.9 3.7 27 16-42 210-236 (468)
496 TIGR03849 arch_ComA phosphosul 20.7 1.1E+02 0.0023 27.0 3.1 23 16-38 99-121 (237)
497 PF11658 DUF3260: Protein of u 20.6 1.3E+02 0.0028 29.5 3.9 30 16-45 382-411 (518)
498 PLN02607 1-aminocyclopropane-1 20.6 1.1E+02 0.0025 29.6 3.7 32 11-42 211-245 (447)
499 COG2873 MET17 O-acetylhomoseri 20.6 90 0.002 29.4 2.8 30 11-40 158-187 (426)
500 COG2008 GLY1 Threonine aldolas 20.4 96 0.0021 28.9 2.9 27 11-37 141-170 (342)
No 1
>PLN00196 alpha-amylase; Provisional
Probab=100.00 E-value=1.5e-67 Score=496.82 Aligned_cols=348 Identities=65% Similarity=1.233 Sum_probs=308.2
Q ss_pred CCcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCCCCCC
Q 018833 2 PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSD 81 (350)
Q Consensus 2 p~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 81 (350)
|.|||++||++|||++||++||++||++||+||+|+|+||++.++......|..+.++.+.++..|+....+.....|.+
T Consensus 77 ~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 156 (428)
T PLN00196 77 PGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSD 156 (428)
T ss_pred ccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCcccccccCCCceEECCCCCCCCccccccccCCCCcccccC
Confidence 78999999349999999999999999999999999999999988875555676677666666788887666665566777
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcCCCcEEEeecCCCCCC
Q 018833 82 GQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYG 161 (350)
Q Consensus 82 ~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~p~~~~~E~~~~~~~~ 161 (350)
+.+++..+.++..+||||++||+|+++|+++++||++++||||||+|+|++++.+|+++++++.+|.|+|||.|.+..+.
T Consensus 157 ~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~wl~~~~GiDG~RlD~ak~~~~~f~~~~v~~~~p~f~VGE~W~~~~~~ 236 (428)
T PLN00196 157 GTGNLDTGADFAAAPDIDHLNKRVQRELIGWLLWLKSDIGFDAWRLDFAKGYSAEVAKVYIDGTEPSFAVAEIWTSMAYG 236 (428)
T ss_pred CCCceeCCCCCCCCCccCCCCHHHHHHHHHHHHHHhhCCCCCEEEeehhhhCCHHHHHHHHHccCCcEEEEEEecccccc
Confidence 77778888999999999999999999999999999878999999999999999999999999889999999999886666
Q ss_pred CCCCCCCCCCcchhHHHHHHHhcCC---ceeEecccchHHHHHhhcccccccccccCCCCCcccCCCCcccccccCCCCC
Q 018833 162 PDGKPDANQDGHRGALKDWVQAAGG---AVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTG 238 (350)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~ 238 (350)
+.+..+|.++.+++.+..|++..++ ..++|||++...+..++.++.+++.+.....+++....|..+|+|++|||++
T Consensus 237 ~~~~~~~~~~~~r~~l~~~l~~~g~~~~~~~~fDF~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~~aVtFvdNHDT~ 316 (428)
T PLN00196 237 GDGKPEYDQNAHRQELVNWVDRVGGAASPATVFDFTTKGILNVAVEGELWRLRGADGKAPGVIGWWPAKAVTFVDNHDTG 316 (428)
T ss_pred ccCCccccchhhHHHHHHHHHhcCCccCcceeecccchHHHHHHhcCCchhhhhhcccCcchhhcChhhceeeccCCCCc
Confidence 6677888887788899999986653 3468999998877777777777776665545566777899999999999999
Q ss_pred cCCCCCCCCcchHHHHHHHHHcCCCceeEecCCCCCCchHHHHHHHHHHHHhcCccCCcceEEEecCCCEEEEEECCEEE
Q 018833 239 STQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAIGDRVI 318 (350)
Q Consensus 239 r~~~~~~~~~~~~~~a~a~ll~~pG~P~iy~G~~~~w~l~~~~~~L~~lR~~~~~l~~g~~~~~~~~~~~~~~~r~~~~l 318 (350)
|+.+......++.++|+|++||+||+|+||||+-++|++.+.|++|+++|+++++++.|+++++..++++|++.|+++++
T Consensus 317 r~~~~~~~~~~~~~lAyA~iLT~pG~P~IyYg~~~~~~~~~~i~~Li~~Rk~~~~~~~g~~~~~~a~~d~yv~~~~~~~~ 396 (428)
T PLN00196 317 STQHMWPFPSDKVMQGYAYILTHPGNPCIFYDHFFDWGLKEEIAALVSIRNRNGITPTSELRIMEADADLYLAEIDGKVI 396 (428)
T ss_pred cccccCCCccchHHHHHHHHHcCCCcceEeeCCCcCccHHHHHHHHHHHHHhCCCcCCccEEEEEecCCEEEEEECCEEE
Confidence 99888776677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCCcCCCCcEEEEcCCceEEEec
Q 018833 319 MKIGPKMDIGNLIPSDFKVAADGTDYAVWEK 349 (350)
Q Consensus 319 v~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (350)
|+||.+++.+.+.|.+|++.++|++|+||+|
T Consensus 397 ~~i~~~~~~~~~~~~~~~~~~~g~~~~~w~~ 427 (428)
T PLN00196 397 VKIGSRYDVSHLIPEGFQVVAHGNGYAVWEK 427 (428)
T ss_pred EEECCCCCccccCcccceEEEecCCeEEEec
Confidence 9999999999999999999999999999997
No 2
>PLN02361 alpha-amylase
Probab=100.00 E-value=1.5e-63 Score=464.23 Aligned_cols=336 Identities=48% Similarity=0.948 Sum_probs=285.4
Q ss_pred CCCcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCCCCC
Q 018833 1 MPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYS 80 (350)
Q Consensus 1 ~p~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 80 (350)
.|.|||++| ++|||++||++||++||++||+||+|+|+||++...+.....|..+.+. +..|.....+...
T Consensus 61 ~~~d~y~~~-~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~~g~~~~~~~~y~~~~g~----~~~wd~~~~~~~~---- 131 (401)
T PLN02361 61 LPQNLYSLN-SAYGSEHLLKSLLRKMKQYNVRAMADIVINHRVGTTQGHGGMYNRYDGI----PLPWDEHAVTSCT---- 131 (401)
T ss_pred CcccccccC-cccCCHHHHHHHHHHHHHcCCEEEEEEccccccCCCCCCCCCcccCCCC----cCCCCcccccccc----
Confidence 378999999 9999999999999999999999999999999976554333434333221 1234432222111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcCCCcEEEeecCCCCC
Q 018833 81 DGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSY 160 (350)
Q Consensus 81 ~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~p~~~~~E~~~~~~~ 160 (350)
.+.+.+..+.++..+||||++||+||++++++++||++++||||||+|+|++++.+||++++++.+|.|+|||+|.++.+
T Consensus 132 ~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~wl~~~~GiDGfRlDavk~~~~~f~~~~~~~~~p~f~VGE~w~~~~~ 211 (401)
T PLN02361 132 GGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDFAKGYSAKFVKEYIEAAKPLFSVGEYWDSCNY 211 (401)
T ss_pred CCCCCccCCCCCccCCccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEeccccCCHHHHHHHHHhhCCeEEEEEEecCCCc
Confidence 12234455667889999999999999999999998888899999999999999999999999998999999999987554
Q ss_pred CC-CCCCCCCCCcchhHHHHHHHhcCCceeEecccchHHHHHhhcccccccccccCCCCCcccCCCCcccccccCCCCCc
Q 018833 161 GP-DGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGS 239 (350)
Q Consensus 161 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r 239 (350)
.+ ++.++|+++.+++.+..|+..+++..++|||+++..+++++.++.+++.+.....+++.+..|.++|+|++|||++|
T Consensus 212 ~~~d~~~~y~~~~~~~~l~~~~~~~~~~~~~fDF~l~~~l~~a~~~~~~~l~~~~~~~~~~~~~~p~~aVTFvdNHDt~r 291 (401)
T PLN02361 212 SGPDYRLDYNQDSHRQRIVNWIDGTGGLSAAFDFTTKGILQEAVKGQWWRLRDAQGKPPGVMGWWPSRAVTFIDNHDTGS 291 (401)
T ss_pred CCcccccchhhhhHHHHHHHHHHhcCCcceeecHHHHHHHHHHHhhhHHHHhhhhcCCcchhhcChhhceEecccCcCcc
Confidence 33 45588998888899999999888889999999999999999777777777665556777778999999999999999
Q ss_pred CCCCCCCCcchHHHHHHHHHcCCCceeEecCCCCCCc--hHHHHHHHHHHHHhcCccCCcceEEEecCCCEEEEEECCEE
Q 018833 240 TQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWG--LKEAISKLAAVRNRNGINTASRVNILASDADVYIAAIGDRV 317 (350)
Q Consensus 240 ~~~~~~~~~~~~~~a~a~ll~~pG~P~iy~G~~~~w~--l~~~~~~L~~lR~~~~~l~~g~~~~~~~~~~~~~~~r~~~~ 317 (350)
+.+.......+.++|+|++||.||+|+||||+-++|+ +.+.|++|+++||++++++.|.++++..++++|+-..++++
T Consensus 292 ~~~~~~~~~~~~~~AyA~iLT~pG~P~Vyyg~~~~~~~~~~~~I~~Li~lRk~~~~~~~s~~~i~~a~~~~y~a~i~~~~ 371 (401)
T PLN02361 292 TQAHWPFPSDHIMEGYAYILTHPGIPTVFYDHFYDWGGSIHDQIVKLIDIRKRQDIHSRSSIRILEAQSNLYSAIIDEKL 371 (401)
T ss_pred hhhccCCchHHHHHHHHHHHCCCCcCeEeeccccCCChHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCeEEEEECCeE
Confidence 9888777777899999999999999999999999995 99999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCCcCCC--CcEEEEcCCceEEEec
Q 018833 318 IMKIGPKMDIGNLIPS--DFKVAADGTDYAVWEK 349 (350)
Q Consensus 318 lv~~n~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 349 (350)
+|.|+.+ .+.|. +|+++++|.+|+||+|
T Consensus 372 ~~k~g~~----~~~p~~~~~~~~~~g~~~~~w~~ 401 (401)
T PLN02361 372 CMKIGDG----SWCPSGREWTLATSGHRYAVWHK 401 (401)
T ss_pred EEEecCC----CCCCCCCCceEEEecCceEEeeC
Confidence 9999994 44444 5999999999999997
No 3
>PLN02784 alpha-amylase
Probab=100.00 E-value=6.3e-58 Score=447.74 Aligned_cols=341 Identities=49% Similarity=0.933 Sum_probs=290.7
Q ss_pred CCCcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCCCCC
Q 018833 1 MPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYS 80 (350)
Q Consensus 1 ~p~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 80 (350)
.|.|||++| ++|||++||++||++||++||+||+|+|+||++..+......|..|.+ ...|.....+.....|.
T Consensus 553 ~p~D~y~ld-s~yGT~~ELk~LI~a~H~~GIkVIlDiViNH~ag~f~~~~g~~~~f~g-----~~dW~d~~i~~ddp~F~ 626 (894)
T PLN02784 553 MPKDLYNLN-SRYGTIDELKDLVKSFHEVGIKVLGDAVLNHRCAHFQNQNGVWNIFGG-----RLNWDDRAVVADDPHFQ 626 (894)
T ss_pred CcccccccC-cCcCCHHHHHHHHHHHHHCCCEEEEEECcccccccccCCCCcccccCC-----eecCCCCcccCCCcccC
Confidence 489999999 999999999999999999999999999999998765433333443432 34565544444433343
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcCCCcEEEeecCCCCC
Q 018833 81 DGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSY 160 (350)
Q Consensus 81 ~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~p~~~~~E~~~~~~~ 160 (350)
+.++.+.+.++..+||||+.||.||++|+++++||++++||||||+|+|+++...|+++++++.+|.|++||.|.+..+
T Consensus 627 -GrG~~~sgddf~~lPDLDh~npeVR~eL~~WlkWL~~e~G~DGfRLDaVKgf~~~Fvkeyv~a~kp~F~VGEyWd~~~~ 705 (894)
T PLN02784 627 -GRGNKSSGDNFHAAPNIDHSQDFVRKDLKEWLCWMRKEVGYDGWRLDFVRGFWGGYVKDYMEASEPYFAVGEYWDSLSY 705 (894)
T ss_pred -CcCCcCcccccCcCCcCCCCCHHHHHHHHHHHHHHHhccCCCEEEEeccCCCCHHHHHHHHhccCCcEEEEEecccccc
Confidence 5566777788999999999999999999999999998899999999999999999999999999999999999987543
Q ss_pred CCCCCCCCCCCcchhHHHHHHHhcCCceeEecccchHHHHHhhc-ccccccccccCCCCCcccCCCCcccccccCCCCCc
Q 018833 161 GPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQ-GELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGS 239 (350)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r 239 (350)
. .+.++|+++.++..+..|+..+++..+.|||+++..+..++. ++.+++.+.....+++.++.|.++|+|++||||.+
T Consensus 706 ~-~g~~~Ynqd~~rq~l~dwi~~tgg~~saFDfplk~~L~~A~~~~e~wrL~d~~g~~~glv~~~P~~AVTFVDNHDTg~ 784 (894)
T PLN02784 706 T-YGEMDYNQDAHRQRIVDWINATNGTAGAFDVTTKGILHSALERCEYWRLSDQKGKPPGVVGWWPSRAVTFIENHDTGS 784 (894)
T ss_pred c-cCccccCchhHHHHHHHHHHhCCCceeeechhHHHHHHHHHhccchhhhhhccCCCCCeeccccCceEEEecCCCCCC
Confidence 2 467899999999999999999888899999999999999985 57888887776677889999999999999999999
Q ss_pred CCCCCCCCcchHHHHHHHHHcCCCceeEecCCCCCCchHHHHHHHHHHHHhcCccCCcceEEEecCCCEEEEEECCEEEE
Q 018833 240 TQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAIGDRVIM 319 (350)
Q Consensus 240 ~~~~~~~~~~~~~~a~a~ll~~pG~P~iy~G~~~~w~l~~~~~~L~~lR~~~~~l~~g~~~~~~~~~~~~~~~r~~~~lv 319 (350)
.++...+...+..+|+|++||.||+|+||||+.+ |.+.+.|++|+.+|++.-.-.+...+++..+.++|+-..+++++|
T Consensus 785 ~Q~~w~~p~~k~~~AYAyILthpG~PcVFy~h~y-~~~~~~I~~Li~iRk~~gI~~~S~v~i~~a~~~~Y~a~i~~k~~~ 863 (894)
T PLN02784 785 TQGHWRFPEGKEMQGYAYILTHPGTPAVFYDHIF-SHYHPEIASLISLRNRQKIHCRSEVKITKAERDVYAAIIDEKVAM 863 (894)
T ss_pred CcccCCCCccchhhHHHHHHcCCCcceEEehhhh-hhhHHHHHHHHHHHHHcCCCCCCceeEEEecCCcEEEEeCCeeEE
Confidence 8776666677888999999999999999999977 577888999999999988778888999999999999999999999
Q ss_pred EeCCCCCCCCcCCCCcEEEEcCCceEEEecC
Q 018833 320 KIGPKMDIGNLIPSDFKVAADGTDYAVWEKN 350 (350)
Q Consensus 320 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (350)
.|+...-.....+..|+++++|++|+||+|.
T Consensus 864 kiG~~~~~p~~~~~~~~~~~sG~~yavW~k~ 894 (894)
T PLN02784 864 KIGPGHYEPPNGPQNWSVALEGQDYKVWETS 894 (894)
T ss_pred EECCcccCCCCCCCceEEEEecCCeEEEeCC
Confidence 9999532211112369999999999999984
No 4
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=100.00 E-value=3.4e-50 Score=389.21 Aligned_cols=300 Identities=26% Similarity=0.424 Sum_probs=215.3
Q ss_pred CCccc---------CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCCCc---------------ccce---
Q 018833 2 PGRLY---------DLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGR---------------GIYC--- 54 (350)
Q Consensus 2 p~d~~---------~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~~~---------------~~~~--- 54 (350)
|.||+ +|| |+|||++|||+||++||++||+||+|+|+||||..+..+. ..++
T Consensus 58 ~~D~~~~~~~~~~~~id-~~fGt~~dl~~Li~~~H~~Gi~vi~D~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (479)
T PRK09441 58 VYDLFDLGEFDQKGTVR-TKYGTKEELLNAIDALHENGIKVYADVVLNHKAGADEKETFRVVEVDPDDRTQIISEPYEIE 136 (479)
T ss_pred eecccccccccccCCcC-cCcCCHHHHHHHHHHHHHCCCEEEEEECcccccCCCcceeeeeeeeCccccccccCCceeec
Confidence 57888 799 9999999999999999999999999999999997542100 0011
Q ss_pred eecC---C-C--CCCC--CCCCCCccccCC-----------------CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q 018833 55 IFEG---G-T--SDDR--LDWGPSFICRGD-----------------KEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKEL 109 (350)
Q Consensus 55 ~~~~---~-~--~~~~--~~w~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l 109 (350)
.|.. . . +... ..|+.. +..+ ..|.+........+.+..+||||++||+|+++|
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~lpDLn~~np~V~~~l 214 (479)
T PRK09441 137 GWTRFTFPGRGGKYSDFKWHWYHF--SGTDYDENPDESGIFKIVGDGKGWDDQVDDENGNFDYLMGADIDFRHPEVREEL 214 (479)
T ss_pred ccccccCCCCCCcCCcceeCCcCC--CCcccccccCcCceEEecCCCCCCccccccccCCcccccccccccCCHHHHHHH
Confidence 1110 0 0 0000 011100 0000 001100001112234566999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhc---C-C-CcEEEeecCCCCCCCCCCCCCCCCcchhHHHHHHHhc
Q 018833 110 SDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENT---S-P-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAA 184 (350)
Q Consensus 110 ~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~---~-p-~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (350)
++++++|++++||||||+|+|++++.++|+++.+++ . | .+++||+|... ...+..|+...
T Consensus 215 ~~~~~~w~~~~giDGfRlDavk~v~~~f~~~~~~~~~~~~~~~~~~vGE~~~~~---------------~~~~~~y~~~~ 279 (479)
T PRK09441 215 KYWAKWYMETTGFDGFRLDAVKHIDAWFIKEWIEHVREVAGKDLFIVGEYWSHD---------------VDKLQDYLEQV 279 (479)
T ss_pred HHHHHHHHHhcCCCEEEEhhhcCCCHHHHHHHHHHHHHhcCCCeEEEEeecCCC---------------hHHHHHHHHhc
Confidence 999999999899999999999999999999996653 2 3 78999999642 34566777655
Q ss_pred CCceeEecccchHHHHHhhcc-cccccccccCCCCCcccCCCCcccccccCCCCCcCCCCCCCCcc-hHHHHHHHHHcCC
Q 018833 185 GGAVAAFDFTTKGILQAAVQG-ELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSD-KVMLGYAYILTHP 262 (350)
Q Consensus 185 ~~~~~~~d~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~~-~~~~a~a~ll~~p 262 (350)
....++|||++...++.++.+ ....+..... .......+..+++|++|||++|+.+....... ..++|++++||+|
T Consensus 280 ~~~~~~~Df~~~~~l~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~FldNHD~~R~~~~~~~~~~~~~~lA~a~llT~p 357 (479)
T PRK09441 280 EGKTDLFDVPLHYNFHEASKQGRDYDMRNIFD--GTLVEADPFHAVTFVDNHDTQPGQALESPVEPWFKPLAYALILLRE 357 (479)
T ss_pred CCCceEecHHHHHHHHHHHhcCCccchHhhhC--cchhhcCcccceeeeccccCCCcccccccccccchHHHHHHHHhCC
Confidence 456689999999889888753 2222222211 11112245677899999999999876543222 3689999999999
Q ss_pred -CceeEecCCCCCCc-------hHHHHHHHHHHHHhcCccCCcceEEEecCCCEEEEEE-C----CEEEEEeCCC
Q 018833 263 -GTPCIFYDHFFDWG-------LKEAISKLAAVRNRNGINTASRVNILASDADVYIAAI-G----DRVIMKIGPK 324 (350)
Q Consensus 263 -G~P~iy~G~~~~w~-------l~~~~~~L~~lR~~~~~l~~g~~~~~~~~~~~~~~~r-~----~~~lv~~n~~ 324 (350)
|+|+||||+|+++. ++++|++|+++|++++ .|.+..+..++++++|.| + +.++|+||++
T Consensus 358 ~GiP~IYYGdE~g~~g~~~~~~l~~~i~~Li~lRk~~~---~G~~~~~~~~~~~~~~~R~~~~~~~~vvvvinn~ 429 (479)
T PRK09441 358 EGYPCVFYGDYYGASGYYIDMPFKEKLDKLLLARKNFA---YGEQTDYFDHPNCIGWTRSGDEENPGLAVVISNG 429 (479)
T ss_pred CCceeeEeccccCCCCCcccchHHHHHHHHHHHHHHhC---CCCeeEeecCCCEEEEEEecCCCCccEEEEEECC
Confidence 99999999999874 8999999999999854 788888889999999999 2 3588888875
No 5
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=5e-50 Score=395.60 Aligned_cols=296 Identities=20% Similarity=0.310 Sum_probs=203.5
Q ss_pred CCcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCCCcccceeec-C---CCCCCCCCCCCCccccCCC
Q 018833 2 PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFE-G---GTSDDRLDWGPSFICRGDK 77 (350)
Q Consensus 2 p~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~-~---~~~~~~~~w~~~~~~~~~~ 77 (350)
+.||++|| |+|||+++|++||++||++|||||||+|+||||.+|++-.. ..... + +...++.+|+..
T Consensus 212 ~~Dy~~iD-p~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~~~~~f~~-~~~~~~ga~~~~~spy~dwf~~------- 282 (598)
T PRK10785 212 TEDYRHVD-PQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGDSHPWFDR-HNRGTGGACHHPDSPWRDWYSF------- 282 (598)
T ss_pred cccccccC-cccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCCCCHHHHH-hhccccccccCCCCCcceeeEE-------
Confidence 68999999 99999999999999999999999999999999998862100 00000 0 001122234321
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH----HHHHHHHh-cCCCeEEecccCCCC--------HHHHHHH---
Q 018833 78 EYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSD----WMNWLKTE-IGFDGWRFDFVKGYA--------PSITKVY--- 141 (350)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~----~~~~w~~~-~gvDGfR~D~a~~~~--------~~~~~~~--- 141 (350)
...+.+..+.....+|+||++||+|+++|++ ++++|+++ +||||||+|+|+.++ .+||+++
T Consensus 283 ---~~~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~~~~~~~~f~~~~~~~ 359 (598)
T PRK10785 283 ---SDDGRALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHMLGEGGGARNNLQHVAGITQA 359 (598)
T ss_pred ---CCCCCcCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHhccccCccccHHHHHHHHHH
Confidence 1112233445567899999999999999995 79999986 899999999999884 5899998
Q ss_pred HHhcCC-CcEEEeecCCCC-CCC----CCCCCCCCCcchhHHHHHHHhcCCceeEecc-cc-hHHHHHhhcccccccccc
Q 018833 142 MENTSP-DFAVGEKWDSLS-YGP----DGKPDANQDGHRGALKDWVQAAGGAVAAFDF-TT-KGILQAAVQGELWRLKDS 213 (350)
Q Consensus 142 ~~~~~p-~~~~~E~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~-~~~~~~~~~g~~~~~~~~ 213 (350)
+++.+| .+++||+|.... +.+ ++.++|. .+...+..++.... ..+.- .. ...+...+ ....
T Consensus 360 vk~~~pd~~ligE~~~~~~~~l~~~~~d~~mny~--~f~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l----~~~~-- 428 (598)
T PRK10785 360 AKEENPEAYVLGEHFGDARQWLQADVEDAAMNYR--GFAFPLRAFLANTD---IAYHPQQIDAQTCAAWM----DEYR-- 428 (598)
T ss_pred HHhhCCCeEEEEeccCChhhhccCccccccccch--hhhhHHHHHhhccc---cccCccCCCHHHHHHHH----HHHH--
Confidence 455677 779999997532 111 1222220 11111222221000 00000 00 00000000 0000
Q ss_pred cCCCCCcccCCCCcccccccCCCCCcCCCCCCCCcchHHHHHHHHHcCCCceeEecCCC--------------CCC----
Q 018833 214 NGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHF--------------FDW---- 275 (350)
Q Consensus 214 ~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~~~~~~a~a~ll~~pG~P~iy~G~~--------------~~w---- 275 (350)
...+.. ....+++|++|||++|+.+..+.+..++++|++++||+||+|+|||||| |.|
T Consensus 429 -~~~~~~---~~~~~~n~l~nHD~~R~~~~~~~~~~~~kla~~ll~t~pGiP~IYYGdE~G~~g~~dp~~R~~m~W~~~~ 504 (598)
T PRK10785 429 -AGLPHQ---QQLRQFNQLDSHDTARFKTLLGGDKARMPLALVWLFTWPGVPCIYYGDEVGLDGGNDPFCRKPFPWDEAK 504 (598)
T ss_pred -HhCCHH---HHHHhhhccCCCccchhhhhhCCCHHHHHHHHHHHHhCCCCcEEEeeeeccccCCCCCCccCCcCCCccc
Confidence 000000 0012468999999999988877666789999999999999999999996 446
Q ss_pred ---chHHHHHHHHHHHHhcCccCCcceEEEecCCCEEEEEE---CCEEEEEeCCC
Q 018833 276 ---GLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAI---GDRVIMKIGPK 324 (350)
Q Consensus 276 ---~l~~~~~~L~~lR~~~~~l~~g~~~~~~~~~~~~~~~r---~~~~lv~~n~~ 324 (350)
++++++|+|++||+++|+|+.|.++.+..++++++|.| +++++|++|.+
T Consensus 505 ~~~~l~~~~r~Li~lRk~~~aL~~G~~~~l~~~~~v~af~R~~~~~~vlVviN~s 559 (598)
T PRK10785 505 QDGALLALYQRMIALRKKSQALRRGGCQVLYAEGNVVVFARVLQQQRVLVAINRG 559 (598)
T ss_pred CchHHHHHHHHHHHHHhhCcccccCcEEEEEeCCCEEEEEEECCCCEEEEEEECC
Confidence 38999999999999999999999999998899999999 78999999996
No 6
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=1.2e-48 Score=382.24 Aligned_cols=303 Identities=20% Similarity=0.276 Sum_probs=217.7
Q ss_pred CCcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCC---------CcccceeecCCCCCCCCCCCCCcc
Q 018833 2 PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD---------GRGIYCIFEGGTSDDRLDWGPSFI 72 (350)
Q Consensus 2 p~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~---------~~~~~~~~~~~~~~~~~~w~~~~~ 72 (350)
+.||++|| |+|||+++|++||++||++||+||||+|+||||.+|++ +..+|+.|.+.....+.+|...+
T Consensus 61 ~~d~~~id-~~~Gt~~~~~~lv~~ah~~gi~vilD~v~NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~- 138 (543)
T TIGR02403 61 VSDYYAIN-PLFGTMADFEELVSEAKKRNIKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKF- 138 (543)
T ss_pred ccccCccC-cccCCHHHHHHHHHHHHHCCCEEEEEECccccccchHHHHHhhcCCCcccCceEecCCCCCCCCcccccC-
Confidence 68999999 99999999999999999999999999999999999862 23466666543222234454332
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC------------------
Q 018833 73 CRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA------------------ 134 (350)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~------------------ 134 (350)
+...+.+....+.++...+...+||||++||+|+++|.++++||++ .||||||||+|++++
T Consensus 139 ~~~~w~~~~~~~~~y~~~f~~~~pdln~~np~v~~~i~~~~~~W~~-~giDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~ 217 (543)
T TIGR02403 139 GGSAWEYFGDTGQYYLHLFDKTQADLNWENPEVREELKDVVNFWRD-KGVDGFRLDVINLISKDQFFEDDEIGDGRRFYT 217 (543)
T ss_pred CCcCccccCCCCceEEeccCCcCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEeeehhhccCcccCCCCCCCCccccC
Confidence 1223444444566677778889999999999999999999999998 899999999999985
Q ss_pred -----HHHHHHHHHhc--CC-CcEEEeecCCCCCCCCCCCCCCCCcchhHHHHHHHh-cCCceeEecccchHHHHHhhcc
Q 018833 135 -----PSITKVYMENT--SP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA-AGGAVAAFDFTTKGILQAAVQG 205 (350)
Q Consensus 135 -----~~~~~~~~~~~--~p-~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~g 205 (350)
.+||+++.+.+ +| ++++||+|... ...+..|... ...++++|+|.. .......+
T Consensus 218 ~~~~~~~f~~~~~~~~~~~~~~~lvgE~~~~~---------------~~~~~~y~~~~~~~~d~~~nf~~--~~~~~~~~ 280 (543)
T TIGR02403 218 DGPRVHEYLQEMNQEVFGDNDSVTVGEMSSTT---------------IENCIRYSNPENKELSMVFTFHH--LKVDYPNG 280 (543)
T ss_pred CChHHHHHHHHHHHHhhccCCeEEEEEeCCCC---------------HHHHHhhhCCCCCeeCeEEChhh--hhchhccc
Confidence 35888884433 45 78999998631 2334455432 234677777742 11111111
Q ss_pred c--------ccccccccC-CCCCcccCCCCcccccccCCCCCcCCCCCCCCc----chHHHHHHHHHcCCCceeEecCCC
Q 018833 206 E--------LWRLKDSNG-KPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPS----DKVMLGYAYILTHPGTPCIFYDHF 272 (350)
Q Consensus 206 ~--------~~~~~~~~~-~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~----~~~~~a~a~ll~~pG~P~iy~G~~ 272 (350)
. ...+..... ...... ......++|++|||++|+.+.++... ..+++++++++|+||+|+||||||
T Consensus 281 ~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~fl~NHD~~R~~s~~g~~~~~~~~~~k~~a~ll~tlpG~P~IYYGdE 359 (543)
T TIGR02403 281 EKWTLAKFDFAKLKEIFSTWQTGMQ-AGGGWNALFWNNHDQPRAVSRFGDDGEYRVESAKMLAAAIHLLRGTPYIYQGEE 359 (543)
T ss_pred cccccCCCCHHHHHHHHHHHHHhcc-ccCcceeeecCCCChhhHHHhcCCchhhHHHHHHHHHHHHHHCCCCeEEEeccc
Confidence 1 011111000 000000 01122356999999999988886432 247788899999999999999984
Q ss_pred ---------------------------------------------------CCC--------------------------
Q 018833 273 ---------------------------------------------------FDW-------------------------- 275 (350)
Q Consensus 273 ---------------------------------------------------~~w-------------------------- 275 (350)
|+|
T Consensus 360 iGm~~~~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~rd~~RtPm~W~~~~~aGFs~~~pwl~~~~~~~~~nv 439 (543)
T TIGR02403 360 IGMTNPKFTNIEDYRDVESLNAYDILLKKGKSEEEALAILKQKSRDNSRTPMQWNNEKNAGFTTGKPWLGVATNYKEINV 439 (543)
T ss_pred cCCCCCCCCCHHHhcCHHHHHHHHHHhhcCCCHHHHHHhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCCCccccCH
Confidence 234
Q ss_pred --------chHHHHHHHHHHHHhcCccCCcceEEEecC-CCEEEEEE---CCEEEEEeCCCC
Q 018833 276 --------GLKEAISKLAAVRNRNGINTASRVNILASD-ADVYIAAI---GDRVIMKIGPKM 325 (350)
Q Consensus 276 --------~l~~~~~~L~~lR~~~~~l~~g~~~~~~~~-~~~~~~~r---~~~~lv~~n~~~ 325 (350)
+++++||+|++||+++|+|+.|.++.+..+ ++|++|.| +++++|++|.+.
T Consensus 440 ~~q~~~~~Sll~~yr~Li~lRk~~~aL~~G~~~~~~~~~~~v~a~~R~~~~~~~lVv~N~s~ 501 (543)
T TIGR02403 440 EKALADDNSIFYFYQKLIALRKSEPVITDGDYQFLLPDDPSVWAYTRTYKNQKLLVINNFYG 501 (543)
T ss_pred HHHhhCCccHHHHHHHHHHHHhhcccccCccEEEeecCCCcEEEEEEEcCCcEEEEEEECCC
Confidence 278999999999999999999999988765 47999999 789999999864
No 7
>PRK09505 malS alpha-amylase; Reviewed
Probab=100.00 E-value=1e-48 Score=385.81 Aligned_cols=293 Identities=21% Similarity=0.277 Sum_probs=203.9
Q ss_pred CCcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCC--------------------CcccceeecCCCC
Q 018833 2 PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD--------------------GRGIYCIFEGGTS 61 (350)
Q Consensus 2 p~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~--------------------~~~~~~~~~~~~~ 61 (350)
+.||++|| ++|||++||++||++||++||+||||+|+||+|..+.. ....|..|.+..
T Consensus 278 ~~D~~~id-~~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~~~~~~~~~~~~~~~~~~~w~~~~- 355 (683)
T PRK09505 278 TLDWTKLD-ANMGTEADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEFQFGALYLSGDENKKTLGERWSDWQPAA- 355 (683)
T ss_pred ccccccCC-CCCCCHHHHHHHHHHHHHCCCEEEEEECcCCCcccccccccccchhhhhhhccccccccCcccccccccc-
Confidence 57999999 99999999999999999999999999999999964321 011122221100
Q ss_pred CCCCCCCCCcc---ccCCCCCCCC---------------CCCCCCCCCCCCCCCCCCC----------------------
Q 018833 62 DDRLDWGPSFI---CRGDKEYSDG---------------QGNDDTGEDFQPAPDIDHL---------------------- 101 (350)
Q Consensus 62 ~~~~~w~~~~~---~~~~~~~~~~---------------~~~~~~~~~~~~~~dln~~---------------------- 101 (350)
..+|++... ......|.+. .+..........+||||++
T Consensus 356 --~~~~~~~~~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~te~~~~~~lp~f~~~~p~~~~~~~ 433 (683)
T PRK09505 356 --GQNWHSFNDYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTQASGLPVFYANKPDTRAKAI 433 (683)
T ss_pred --cccccccccccccCCccccccccccccccccccccccccccccccccccCCcccccCccccccchhhhcCcccccccc
Confidence 111211100 0000111110 0011112233567888776
Q ss_pred -CHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhc----------C--------CCcEEEeecCCCCCCC
Q 018833 102 -NPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENT----------S--------PDFAVGEKWDSLSYGP 162 (350)
Q Consensus 102 -n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~----------~--------p~~~~~E~~~~~~~~~ 162 (350)
||+|+++|++++++|++++||||||+|+|+|++.+||+++.+++ + +++++||+|+...
T Consensus 434 ~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaakhV~~~FW~~~~~~~~~~l~~~k~~~~d~~~~~~~~~~vGEvw~~~~--- 510 (683)
T PRK09505 434 DGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVELPAWQQLKQEASAALAEWKKANPDKALDDAPFWMTGEAWGHGV--- 510 (683)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCEEEEechHhCCHHHHHHHHHHHHHHHHHHHHhccccccccCCeEEEEEecCCch---
Confidence 45999999999999999899999999999999999999984322 1 3679999996421
Q ss_pred CCCCCCCCCcchhHHHHHHHhcCCceeEecccchHHHHHhhc--ccccccccccCCCCCcccCCCCcccccccCCCCCcC
Q 018833 163 DGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQ--GELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGST 240 (350)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~ 240 (350)
....|.. .+++++++|++...+..++. ..+..+..... ... ....+++|++|||++|+
T Consensus 511 -------------~~~~y~~--~~fDsv~NF~~~~~~~~~~~~~~~l~~~~~~~~---~~~--~~~~~l~FLdNHDt~Rf 570 (683)
T PRK09505 511 -------------MKSDYYR--HGFDAMINFDYQEQAAKAVDCLAQMDPTYQQMA---EKL--QDFNVLSYLSSHDTRLF 570 (683)
T ss_pred -------------hhHHHHh--hcCccccCchHHHHHHHHHHHHHHHHHHHHHHh---hhc--CccceeecccCCChhhh
Confidence 1123433 35889999988766554432 11222111111 000 11235689999999998
Q ss_pred CCCCCCCcchHHHHHHHHHcCCCceeEecCCCC-------------------CC--------chHHHHHHHHHHHHhcCc
Q 018833 241 QRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFF-------------------DW--------GLKEAISKLAAVRNRNGI 293 (350)
Q Consensus 241 ~~~~~~~~~~~~~a~a~ll~~pG~P~iy~G~~~-------------------~w--------~l~~~~~~L~~lR~~~~~ 293 (350)
.+.... .+++++|++++||+||+|+||||+|. .| +++++||+|++||+++|+
T Consensus 571 ~s~~~~-~~~~klAaall~tlpGiP~IYYGdEiGm~gg~~g~DP~~~~R~~M~W~~~~~~~~~Ll~~~kkLi~LRk~~pA 649 (683)
T PRK09505 571 FEGGQS-YAKQRRAAELLLLAPGAVQIYYGDESARPFGPTGSDPLQGTRSDMNWQEVSGKSAALLAHWQKLGQFRARHPA 649 (683)
T ss_pred hhhcCc-hHHHHHHHHHHHhCCCCcEEEechhhCccCCCCCCCCcccccccCCccccccchHHHHHHHHHHHHHHhhCHH
Confidence 877653 36889999999999999999999853 46 389999999999999999
Q ss_pred cCCcceEEEecCCCEEEEEE---CCEEEEEeCC
Q 018833 294 NTASRVNILASDADVYIAAI---GDRVIMKIGP 323 (350)
Q Consensus 294 l~~g~~~~~~~~~~~~~~~r---~~~~lv~~n~ 323 (350)
|+.|.++.+. .+++++|.| ++++|||+|.
T Consensus 650 L~~G~~~~l~-~~~~~aF~R~~~~d~vlVv~~~ 681 (683)
T PRK09505 650 IGAGKQTTLS-LKQYYAFVREHGDDKVMVVWAG 681 (683)
T ss_pred hhCCceEEec-cCCEEEEEEEeCCCEEEEEEeC
Confidence 9999998874 568999999 7889999986
No 8
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=1.6e-48 Score=382.09 Aligned_cols=303 Identities=18% Similarity=0.267 Sum_probs=213.7
Q ss_pred CCcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCC----------CcccceeecCCCCCCCCCCCCCc
Q 018833 2 PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD----------GRGIYCIFEGGTSDDRLDWGPSF 71 (350)
Q Consensus 2 p~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~----------~~~~~~~~~~~~~~~~~~w~~~~ 71 (350)
+.||++|| |+|||+++|++||++||++||+||||+|+||+|.+|++ +..+|+.|.+... .+......+
T Consensus 62 ~~dy~~vd-~~~Gt~~df~~Lv~~ah~~Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 139 (539)
T TIGR02456 62 VSDYRAIL-PEFGTIDDFKDFVDEAHARGMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDE-KYKDTRIIF 139 (539)
T ss_pred cccccccC-hhhCCHHHHHHHHHHHHHCCCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCc-ccccccccc
Confidence 68999999 99999999999999999999999999999999999852 2345665543211 000000000
Q ss_pred c--ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC-------------CHH
Q 018833 72 I--CRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY-------------APS 136 (350)
Q Consensus 72 ~--~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~-------------~~~ 136 (350)
. ....+.+....+.++...+...+|+||++||+||++|++++++|++ +||||||||+++++ ..+
T Consensus 140 ~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~np~vr~~l~~~~~~w~~-~GvDGfRlDav~~~~~~~~~~~~~~p~~~~ 218 (539)
T TIGR02456 140 VDTEKSNWTFDPVAKQYYWHRFFSHQPDLNYDNPAVHDAVHDVMRFWLD-LGVDGFRLDAVPYLYEREGTSCENLPETHE 218 (539)
T ss_pred cccCCCCccccCCcCeeEEecccCCCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEecHHhhhccCCCccCCCchHHH
Confidence 0 0111222233334444456789999999999999999999999998 99999999999876 357
Q ss_pred HHHHHH---HhcCC-CcEEEeecCCCCCCCCCCCCCCCCcchhHHHHHHHh-cC-CceeEecccchHHHHHhh-cccccc
Q 018833 137 ITKVYM---ENTSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA-AG-GAVAAFDFTTKGILQAAV-QGELWR 209 (350)
Q Consensus 137 ~~~~~~---~~~~p-~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~d~~~~~~~~~~~-~g~~~~ 209 (350)
||+++. ++.+| .+++||++.. ...+..|... .. +++++|+|++...+..++ .++...
T Consensus 219 f~~~~~~~v~~~~p~~~~iaE~~~~----------------~~~~~~y~~~~~~~~~d~~f~f~l~~~~~~~l~~~~~~~ 282 (539)
T TIGR02456 219 FLKRLRKMVDREYPGRMLLAEANQW----------------PEEVVAYFGDEGDPECHMAFNFPVMPRIFMALRREDRSP 282 (539)
T ss_pred HHHHHHHHHHHhCCCeEEEEEeCCC----------------HHHHHHhhCCCCCCeeeeEEChhhhhhhhcccccCCHHH
Confidence 998884 44467 7799998532 3445566533 12 588899998865554433 222222
Q ss_pred cccccCCCCCcccCCCCcccccccCCCCCc-------------------------------CCCCCCCCcchHHHHHHHH
Q 018833 210 LKDSNGKPPGFIGILPQNAVTFIDNHDTGS-------------------------------TQRLWPFPSDKVMLGYAYI 258 (350)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r-------------------------------~~~~~~~~~~~~~~a~a~l 258 (350)
+.......... ..+...++|++|||+.| +.+..+...+++++|++++
T Consensus 283 l~~~l~~~~~~--~~~~~~~~fl~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~s~~~~~~~~~kla~~~l 360 (539)
T TIGR02456 283 IIDILKETPDI--PDSCQWCIFLRNHDELTLEMVTDEERDFMYAAYAPDPRMRINLGIRRRLAPLLDNDRRRIELLTALL 360 (539)
T ss_pred HHHHHHHhhhc--cCCCceeeecCCCCccCccccChhhhhhhhhhccCCcchhcccchhhhhhhcccccHHHHHHHHHHH
Confidence 21111100110 01233467999999954 2233333345789999999
Q ss_pred HcCCCceeEecCCCC------------------CCc-----------------------------------------hHH
Q 018833 259 LTHPGTPCIFYDHFF------------------DWG-----------------------------------------LKE 279 (350)
Q Consensus 259 l~~pG~P~iy~G~~~------------------~w~-----------------------------------------l~~ 279 (350)
||+||+|+||||+|+ +|+ +++
T Consensus 361 ~tlpG~P~IYYG~EiGm~~~~~~~~~~~~R~pm~W~~~~~~gfs~~~~~~~~~p~~~~~~~~~~~~nv~~q~~~~~sll~ 440 (539)
T TIGR02456 361 LSLPGSPILYYGDEIGMGDNIWLGDRNGVRTPMQWSPDRNAGFSSADPGQLFLPPVQDPVYGYQQVNVEAQLRDPSSLLH 440 (539)
T ss_pred HhCCCceEEEechhhcCcCCCccCCCcCccCCcCcCCCCCCCCCCCCCcccccccccccccccchhhHHHHhhCcccHHH
Confidence 999999999999854 341 688
Q ss_pred HHHHHHHHHHhcCccCCcceEEEecC-CCEEEEEE---CCEEEEEeCCCC
Q 018833 280 AISKLAAVRNRNGINTASRVNILASD-ADVYIAAI---GDRVIMKIGPKM 325 (350)
Q Consensus 280 ~~~~L~~lR~~~~~l~~g~~~~~~~~-~~~~~~~r---~~~~lv~~n~~~ 325 (350)
+||+|++||+++++|+.|+++.+..+ +++++|.| +++++|++|.+.
T Consensus 441 ~yr~Li~lRk~~~aL~~G~~~~l~~~~~~v~~f~R~~~~~~vlVv~N~s~ 490 (539)
T TIGR02456 441 WTRRVLHVRKAHPAFGRGSLTFLPTGNRRVLAFLREYEGERVLCVFNFSR 490 (539)
T ss_pred HHHHHHHHHhcCcccccCceEEEecCCCCEEEEEEEcCCcEEEEEEeCCC
Confidence 99999999999999999999988764 57999998 789999999863
No 9
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=9.3e-47 Score=368.36 Aligned_cols=302 Identities=19% Similarity=0.266 Sum_probs=216.1
Q ss_pred CCcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCC---------CcccceeecCCCCC-CCCCCCCCc
Q 018833 2 PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD---------GRGIYCIFEGGTSD-DRLDWGPSF 71 (350)
Q Consensus 2 p~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~---------~~~~~~~~~~~~~~-~~~~w~~~~ 71 (350)
|.||++|| |+|||++||++||++||++||+||+|+|+||+|.+|++ +..+|+.|.++.+. .+.+|...+
T Consensus 67 ~~d~~~id-~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~ 145 (551)
T PRK10933 67 VANYTAID-PTYGTLDDFDELVAQAKSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKF 145 (551)
T ss_pred cccCCCcC-cccCCHHHHHHHHHHHHHCCCEEEEEECCCCccCchhHHHhhcCCCCCCcCceEecCCCCCCCCCcccccC
Confidence 68999999 99999999999999999999999999999999999863 34567777653321 234554333
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCH----------------
Q 018833 72 ICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP---------------- 135 (350)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~---------------- 135 (350)
+...+.|....+.++...+...+||||++||+|+++|++++++|++ +||||||+|+|++++.
T Consensus 146 -~~~~w~~~~~~~~~y~~~f~~~~pdLn~~np~V~~~l~~~~~~W~~-~GvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~ 223 (551)
T PRK10933 146 -GGSAWRWHAESEQYYLHLFAPEQADLNWENPAVRAELKKVCEFWAD-RGVDGLRLDVVNLISKDQDFPDDLDGDGRRFY 223 (551)
T ss_pred -CCccccccCCCCceEeecccccCCccCCCCHHHHHHHHHHHHHHHH-CCCcEEEEcchhhcCcCCCCCCCccccccccc
Confidence 2334556666667777777889999999999999999999999997 9999999999999863
Q ss_pred -------HHHHHHHHhc-CC--CcEEEeecCCCCCCCCCCCCCCCCcchhHHHHHHHh-cCCceeEecccchHHHHHhhc
Q 018833 136 -------SITKVYMENT-SP--DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA-AGGAVAAFDFTTKGILQAAVQ 204 (350)
Q Consensus 136 -------~~~~~~~~~~-~p--~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~ 204 (350)
++++++.+.+ ++ .+++||++... ...+..|... ...+.+.|+|.. .......
T Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~vgE~~~~~---------------~~~~~~y~~~~~~~~~~~fnf~~--~~~~~~~ 286 (551)
T PRK10933 224 TDGPRAHEFLQEMNRDVFTPRGLMTVGEMSSTS---------------LEHCQRYAALTGSELSMTFNFHH--LKVDYPN 286 (551)
T ss_pred CCChHHHHHHHHHHHHhhcccCcEEEEeecCCC---------------HHHHHHhhcccCCeeeeEecHHH--hhhhhcc
Confidence 4666665432 22 57999998531 2344455432 233566676632 2222222
Q ss_pred cccc--------ccccccCC-CCCcccCCCCcccccccCCCCCcCCCCCCCCcc----hHHHHHHHHHcCCCceeEecCC
Q 018833 205 GELW--------RLKDSNGK-PPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSD----KVMLGYAYILTHPGTPCIFYDH 271 (350)
Q Consensus 205 g~~~--------~~~~~~~~-~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~~----~~~~a~a~ll~~pG~P~iy~G~ 271 (350)
+..+ .+...... ..... .......|++|||++|..+.++.... .++++++++||+||+|+||||+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~fl~NHD~~R~~sr~g~~~~~~~~~aklla~ll~tlpG~P~IYyGe 364 (551)
T PRK10933 287 GEKWTLAKPDFVALKTLFRHWQQGMH--NVAWNALFWCNHDQPRIVSRFGDEGEYRVPAAKMLAMVLHGMQGTPYIYQGE 364 (551)
T ss_pred CCcccccccCHHHHHHHHHHHHHhhc--ccCeeccccCCCCcccHHHHcCCchhHHHHHHHHHHHHHHhCCCceEEEeec
Confidence 2111 00000000 00000 01123568999999999888864322 3567888999999999999998
Q ss_pred CC---------------------------------------------------CC-------------------------
Q 018833 272 FF---------------------------------------------------DW------------------------- 275 (350)
Q Consensus 272 ~~---------------------------------------------------~w------------------------- 275 (350)
|. +|
T Consensus 365 EiGm~~~~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~Rd~~RtPMqW~~~~~~GFs~~~pwl~~~~~~~~in 444 (551)
T PRK10933 365 EIGMTNPHFTRITDYRDVESLNMFAELRNDGRDADELLAILASKSRDNSRTPMQWDNGDNAGFTQGEPWIGLCDNYQEIN 444 (551)
T ss_pred ccCCCCCCCCCHHHhcCHHHHHHHHHHhhcCCCHHHHHhhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCccccccc
Confidence 52 24
Q ss_pred ---------chHHHHHHHHHHHHhcCccCCcceEEEec-CCCEEEEEE---CCEEEEEeCCCC
Q 018833 276 ---------GLKEAISKLAAVRNRNGINTASRVNILAS-DADVYIAAI---GDRVIMKIGPKM 325 (350)
Q Consensus 276 ---------~l~~~~~~L~~lR~~~~~l~~g~~~~~~~-~~~~~~~~r---~~~~lv~~n~~~ 325 (350)
+++++||+|++||+++|+|..|.+..+.. ++.|++|.| +++++|++|.+.
T Consensus 445 v~~Q~~~~~Sll~~yk~Li~lRk~~~aL~~G~~~~~~~~~~~v~af~R~~~~~~~lvv~N~s~ 507 (551)
T PRK10933 445 VEAALADEDSVFYTYQKLIALRKQEPVLTWGDYQDLLPNHPSLWCYRREWQGQTLLVIANLSR 507 (551)
T ss_pred HHHHhcCcccHHHHHHHHHHHhhcChhhccceeEEeccCCCcEEEEEEEcCCcEEEEEEECCC
Confidence 17799999999999999999999997754 467999999 789999999964
No 10
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=100.00 E-value=2.5e-42 Score=342.02 Aligned_cols=309 Identities=19% Similarity=0.245 Sum_probs=201.7
Q ss_pred CCcccCCCCCCCCC--------HHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCCCcccceeecCCCCCCCCCCCCCccc
Q 018833 2 PGRLYDLDASKYGS--------QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFIC 73 (350)
Q Consensus 2 p~d~~~id~~~~Gt--------~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 73 (350)
|.||++++ ++||+ ++|||+||++||++||+||||+|+||++..... .|.+..+ .|+..
T Consensus 207 ~~~y~~~~-~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~~------~f~~~~~----~~~~~--- 272 (605)
T TIGR02104 207 PLNYNVPE-GSYSTNPYDPATRIRELKQMIQALHENGIRVIMDVVYNHTYSREES------PFEKTVP----GYYYR--- 272 (605)
T ss_pred CccCCCcC-hhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEEEEcCCccCCCCC------cccCCCC----CeeEE---
Confidence 68999999 88887 599999999999999999999999999753210 0111000 01000
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHH---HhcCC-Cc
Q 018833 74 RGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYM---ENTSP-DF 149 (350)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~---~~~~p-~~ 149 (350)
. +..+.+..+ .....++|+++|+||++|++++++|++++||||||+|++++++.++|+++. +.++| .+
T Consensus 273 ~------~~~g~~~~~--~g~~~~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~~~~~~~~~p~~~ 344 (605)
T TIGR02104 273 Y------NEDGTLSNG--TGVGNDTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMGIHDIETMNEIRKALNKIDPNIL 344 (605)
T ss_pred E------CCCCCccCC--CcccCCcccCCHHHHHHHHHHHHHHHHHcCCCEEEEechhcCCHHHHHHHHHHHHhhCCCeE
Confidence 0 000011001 111247999999999999999999999999999999999999999999984 45566 67
Q ss_pred EEEeecCCCCCCCCCCCCCCCCcchhHHHHHHHh-cCCceeEecccchHHHHHhh---------ccc---ccccccccCC
Q 018833 150 AVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA-AGGAVAAFDFTTKGILQAAV---------QGE---LWRLKDSNGK 216 (350)
Q Consensus 150 ~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~---------~g~---~~~~~~~~~~ 216 (350)
++||.|...+.. ..+ ........ .....+.+++.+...++... .|. ...+......
T Consensus 345 ligE~w~~~~~~----~~~-------~~~~~~~~~~~~~~~~~n~~~rd~i~~~~~~~~~~~f~~g~~~~~~~l~~~l~~ 413 (605)
T TIGR02104 345 LYGEGWDLGTPL----PPE-------QKATKANAYQMPGIAFFNDEFRDALKGSVFHLKKKGFVSGNPGTEETVKKGILG 413 (605)
T ss_pred EEEccCCCCCCc----chh-------hhhhhhccCCCCceEEECCcchhhhcCCccccccCceecCCCCcHHHHHhheeC
Confidence 999999753210 000 00000000 00124567777776665221 111 0111111100
Q ss_pred C---C--CcccCCCCcccccccCCCCCcCCCCCC----C-----CcchHHHHHHHHHcCCCceeEecCCCC---------
Q 018833 217 P---P--GFIGILPQNAVTFIDNHDTGSTQRLWP----F-----PSDKVMLGYAYILTHPGTPCIFYDHFF--------- 273 (350)
Q Consensus 217 ~---~--~~~~~~~~~~v~f~~nHD~~r~~~~~~----~-----~~~~~~~a~a~ll~~pG~P~iy~G~~~--------- 273 (350)
. . ......|..+|+|++|||+.|+...+. . ..++.++|++++|++||+||||||||+
T Consensus 414 ~~~~~~~~~~~~~p~~~vnyl~~HD~~~l~d~l~~~~~~~~~~~~~~r~rla~alllts~GiP~iy~GdE~g~s~~g~~n 493 (605)
T TIGR02104 414 SIELDAVKPSALDPSQSINYVECHDNHTLWDKLSLANPDETEEQLKKRQKLATAILLLSQGIPFLHAGQEFMRTKQGDEN 493 (605)
T ss_pred ChhhcccccccCChhheEEEEEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCceeecchhhhccCCCCCC
Confidence 0 0 011225668899999999988643321 1 134789999999999999999999965
Q ss_pred -----------CC-------chHHHHHHHHHHHHhcCccCCcceE-------EEe-cCCCEEEEEEC--------CEEEE
Q 018833 274 -----------DW-------GLKEAISKLAAVRNRNGINTASRVN-------ILA-SDADVYIAAIG--------DRVIM 319 (350)
Q Consensus 274 -----------~w-------~l~~~~~~L~~lR~~~~~l~~g~~~-------~~~-~~~~~~~~~r~--------~~~lv 319 (350)
.| ++++++|+|++||+++|+|+.|.+. .+. .++.+++|.|. ++++|
T Consensus 494 ~y~~~d~~~~ldW~~~~~~~~~~~~~~~Li~lRk~~pal~~~~~~~i~~~~~~~~~~~~~vla~~r~~~~~~~~~~~llV 573 (605)
T TIGR02104 494 SYNSPDSINQLDWDRKATFKDDVNYIKGLIALRKAHPAFRLSSAEDIRKHLEFLPAEPSGVIAYRLKDHANGDPWKDIIV 573 (605)
T ss_pred CccCCCcccccCccccccchHHHHHHHHHHHHHhhCccccCCChhhhcceeEEccCCCCcEEEEEEeCCcCCCCcCeEEE
Confidence 35 3899999999999999999988753 222 24679999982 36899
Q ss_pred EeCCCCCC---CCcCCCCcEEEEcCCc
Q 018833 320 KIGPKMDI---GNLIPSDFKVAADGTD 343 (350)
Q Consensus 320 ~~n~~~~~---~~~~~~~~~~~~~~~~ 343 (350)
++|.+... .-..+..|+.+++++.
T Consensus 574 v~N~s~~~~~v~lp~~~~w~~~~~~~~ 600 (605)
T TIGR02104 574 IHNANPEPVDIQLPSDGTWNVVVDNKN 600 (605)
T ss_pred EEeCCCCCeEEECCCCCCEEEEECCCc
Confidence 99986421 1111357888887654
No 11
>PRK12313 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.1e-41 Score=339.50 Aligned_cols=303 Identities=19% Similarity=0.242 Sum_probs=192.6
Q ss_pred CCcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCCCCCC
Q 018833 2 PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSD 81 (350)
Q Consensus 2 p~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 81 (350)
|.||++|+ ++|||++|||+||++||++||+||||+|+||++.++.. +..|.+. + . + .+.+
T Consensus 206 ~~~y~~i~-~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~nH~~~~~~~----~~~~~~~-~--~--~----------~~~~ 265 (633)
T PRK12313 206 LTGYFAPT-SRYGTPEDFMYLVDALHQNGIGVILDWVPGHFPKDDDG----LAYFDGT-P--L--Y----------EYQD 265 (633)
T ss_pred CcCcCcCC-CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCccc----ccccCCC-c--c--e----------eecC
Confidence 67999999 99999999999999999999999999999999976421 0111110 0 0 0 0011
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC-----------------------CHHHH
Q 018833 82 GQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY-----------------------APSIT 138 (350)
Q Consensus 82 ~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~-----------------------~~~~~ 138 (350)
+...+. ..| +.++||+.||+||++|++++++|++++||||||+|++.++ +.+||
T Consensus 266 ~~~~~~--~~w-~~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~fl 342 (633)
T PRK12313 266 PRRAEN--PDW-GALNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTPNKYGGRENLEAIYFL 342 (633)
T ss_pred CCCCcC--CCC-CCcccCCCCHHHHHHHHHHHHHHHHHhCCcEEEEcChhhhhhcccccccCcCCcccCCCCCcHHHHHH
Confidence 100000 011 2368999999999999999999999999999999988644 15788
Q ss_pred HHH---HHhcCC-CcEEEeecCCCCCCCCCCCCCCCCcchhHHHHHHHhcCCceeEecccchHHHHHhhccc-ccccccc
Q 018833 139 KVY---MENTSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE-LWRLKDS 213 (350)
Q Consensus 139 ~~~---~~~~~p-~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~-~~~~~~~ 213 (350)
+++ +++.+| +++|||.+...+... .......-+++..++..++..+...+..+ ..+-...
T Consensus 343 ~~~~~~v~~~~p~~~liaE~~~~~~~~~---------------~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~~~~~~ 407 (633)
T PRK12313 343 QKLNEVVYLEHPDVLMIAEESTAWPKVT---------------GPVEVGGLGFDYKWNMGWMNDTLRYFEEDPIYRKYHH 407 (633)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCcccc---------------ccccCCCCCcCceeCcHHHHHHHHHhhhCcccccccc
Confidence 888 556677 779999874321000 00000011233333333333333333211 1110000
Q ss_pred cCCCCCcccCCCCcccccccCCCCC-----cCCCCCCCCc----chHHHHHHHHHcCCCceeEecCCCCC----------
Q 018833 214 NGKPPGFIGILPQNAVTFIDNHDTG-----STQRLWPFPS----DKVMLGYAYILTHPGTPCIFYDHFFD---------- 274 (350)
Q Consensus 214 ~~~~~~~~~~~~~~~v~f~~nHD~~-----r~~~~~~~~~----~~~~~a~a~ll~~pG~P~iy~G~~~~---------- 274 (350)
......+...... ...+++|||+. |+........ ++++++++++||+||+||||||+|++
T Consensus 408 ~~~~~~~~~~~~e-~~~l~~sHD~~~~g~~~~~~~~~g~~~~~~~~~r~~~~~~~t~pG~Plif~G~E~g~~~~~~~~~~ 486 (633)
T PRK12313 408 NLLTFSFMYAFSE-NFVLPFSHDEVVHGKKSLMHKMPGDRWQQFANLRLLYTYMITHPGKKLLFMGSEFGQFLEWKHDES 486 (633)
T ss_pred ccchHHHhhhhhc-ccccCCCCcccccCCccHHHhcCCCHHHHHHHHHHHHHHHHhCCCCcEeecccccccCccCCccCC
Confidence 0000000000111 12466899994 4433333232 57899999999999999999999754
Q ss_pred --C---------chHHHHHHHHHHHHhcCccCC-----cceEEEecC---CCEEEEEE-----CCEEEEEeCCCCC----
Q 018833 275 --W---------GLKEAISKLAAVRNRNGINTA-----SRVNILASD---ADVYIAAI-----GDRVIMKIGPKMD---- 326 (350)
Q Consensus 275 --w---------~l~~~~~~L~~lR~~~~~l~~-----g~~~~~~~~---~~~~~~~r-----~~~~lv~~n~~~~---- 326 (350)
| ++.+++|+|++||+++|+|+. +.++++..+ +++++|.| ++.++||+|.+..
T Consensus 487 l~W~~~~~~~~~~l~~~~r~Li~LRr~~paL~~~d~~~~~~~~l~~~~~~~~vlaf~R~~~~~~~~llvv~N~s~~~~~~ 566 (633)
T PRK12313 487 LEWHLLEDPMNAGMQRFTSDLNQLYKDEPALWELDFSPDGFEWIDADDADQSVLSFIRKGKNKGDFLVVVFNFTPVERED 566 (633)
T ss_pred CCccccCChhHHHHHHHHHHHHHHHHhChHhhcccCCCCCcEEEECcCCCCCEEEEEEeCCCCCceEEEEEeCCCCcccc
Confidence 5 378899999999999999974 456777643 46999998 2578899998642
Q ss_pred --CCCcCCCCcEEEEcCCc
Q 018833 327 --IGNLIPSDFKVAADGTD 343 (350)
Q Consensus 327 --~~~~~~~~~~~~~~~~~ 343 (350)
++-...+.|+..++++.
T Consensus 567 y~i~~p~~g~~~~ilnsd~ 585 (633)
T PRK12313 567 YRIGVPVAGIYEEILNTDS 585 (633)
T ss_pred eeECCCCCCeEEEEEcCCc
Confidence 12222357888877643
No 12
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=100.00 E-value=4.6e-41 Score=332.87 Aligned_cols=302 Identities=16% Similarity=0.179 Sum_probs=192.8
Q ss_pred CCcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCCCCCC
Q 018833 2 PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSD 81 (350)
Q Consensus 2 p~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 81 (350)
|.||++++ ++|||.+|||+||++||++||+||||+|+||++.++.. +..+.+. ..|+ +.+
T Consensus 192 ~~~y~~~~-~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~~----~~~~~~~-----~~y~----------~~~ 251 (613)
T TIGR01515 192 VTGYYAPT-SRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDDHG----LAEFDGT-----PLYE----------HKD 251 (613)
T ss_pred cccCcccc-cccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCccch----hhccCCC-----ccee----------ccC
Confidence 68999999 99999999999999999999999999999999976421 1111110 0000 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC------------------------HHH
Q 018833 82 GQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA------------------------PSI 137 (350)
Q Consensus 82 ~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~------------------------~~~ 137 (350)
..... ...+ +.+++|++||+||++|++++++|++++||||||+|++.++- .+|
T Consensus 252 ~~~~~--~~~w-~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 328 (613)
T TIGR01515 252 PRDGE--HWDW-GTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGRENLEAVDF 328 (613)
T ss_pred CccCc--CCCC-CCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhhhhccccccccccccccCCcCChHHHHH
Confidence 00000 1112 35689999999999999999999999999999999986542 478
Q ss_pred HHHH---HHhcCC-CcEEEeecCCCCCCCCCCCCCCCCcchhHHHHHHHhcCCceeEecccchHHHHHhhcc-ccccccc
Q 018833 138 TKVY---MENTSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG-ELWRLKD 212 (350)
Q Consensus 138 ~~~~---~~~~~p-~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g-~~~~~~~ 212 (350)
|+++ +++.+| +++|||.+.... ...........+++..+++.++..+...+.. ...+...
T Consensus 329 l~~~~~~v~~~~p~~~liaE~~~~~~---------------~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~~~~~ 393 (613)
T TIGR01515 329 LRKLNQTVYEAFPGVVTIAEESTEWP---------------GVTRPTDEGGLGFHYKWNMGWMHDTLDYMSTDPVERQYH 393 (613)
T ss_pred HHHHHHHHHHHCCCeEEEEEeCCCCc---------------cccccccCCcCCcCeeeCchHHHHHHHHHhhChhhHhhc
Confidence 9888 455667 779999864311 0000111111234455555555444443311 1111100
Q ss_pred ccCCCCCcccCCCCcccccccCCCCC-----cCCCCCCCC----cchHHHHHHHHHcCCCceeEecCCCC----------
Q 018833 213 SNGKPPGFIGILPQNAVTFIDNHDTG-----STQRLWPFP----SDKVMLGYAYILTHPGTPCIFYDHFF---------- 273 (350)
Q Consensus 213 ~~~~~~~~~~~~~~~~v~f~~nHD~~-----r~~~~~~~~----~~~~~~a~a~ll~~pG~P~iy~G~~~---------- 273 (350)
............... ..+++|||+. |+.....+. .+++++++++++|+||+||||||+|+
T Consensus 394 ~~~~~~~~~~~~~e~-~~~~~sHD~~~~g~~~i~~~~~g~~~~~~~~~r~~~~~~~t~pG~plif~G~E~g~~~~~~~~~ 472 (613)
T TIGR01515 394 HQLITFSMLYAFSEN-FVLPLSHDEVVHGKKSLLNKMPGDYWQKFANYRALLGYMWAHPGKKLLFMGSEFAQGSEWNDTE 472 (613)
T ss_pred cccccHHHHHHhhhc-cccCCCCCCcccCcccHHHhCCCchHHHHHHHHHHHHHHHhCCCCCEEEcchhcCcCCCCCCCc
Confidence 000000000001111 2367899993 333333322 25789999999999999999999964
Q ss_pred --CC---------chHHHHHHHHHHHHhcCccCCc-----ceEEEec---CCCEEEEEEC-----CEEEEEeCCCCC---
Q 018833 274 --DW---------GLKEAISKLAAVRNRNGINTAS-----RVNILAS---DADVYIAAIG-----DRVIMKIGPKMD--- 326 (350)
Q Consensus 274 --~w---------~l~~~~~~L~~lR~~~~~l~~g-----~~~~~~~---~~~~~~~~r~-----~~~lv~~n~~~~--- 326 (350)
.| ++.+++|+|++||+++|+|..| .++++.. ++.+++|.|. ++++|++|.+..
T Consensus 473 ~l~W~~~~~~~~~~l~~~~k~L~~Lr~~~paL~~~~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~~~vv~N~~~~~~~ 552 (613)
T TIGR01515 473 QLDWHLLSFPMHQGVSVFVRDLNRTYQKSKALYEHDFDPQGFEWIDVDDDEQSVFSFIRRAKKHGEALVIICNFTPVVRH 552 (613)
T ss_pred cCCCccccCcccHHHHHHHHHHHHHHhhCHHhhccCCCCCceEEEEcccCCCCEEEEEEecCCCCCeEEEEEeCCCCCcc
Confidence 35 3788999999999999999644 4555643 3579999982 368999999643
Q ss_pred ---CCCcCCCCcEEEEcCC
Q 018833 327 ---IGNLIPSDFKVAADGT 342 (350)
Q Consensus 327 ---~~~~~~~~~~~~~~~~ 342 (350)
++-..++.|+.+++++
T Consensus 553 ~Y~i~~p~~g~~~~il~Sd 571 (613)
T TIGR01515 553 QYRVGVPQPGQYREVLNSD 571 (613)
T ss_pred ceEeCCCCCCeEEEEEeCC
Confidence 2212245788877654
No 13
>PRK14706 glycogen branching enzyme; Provisional
Probab=100.00 E-value=2e-40 Score=326.70 Aligned_cols=301 Identities=18% Similarity=0.167 Sum_probs=194.6
Q ss_pred CCcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCCCCCC
Q 018833 2 PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSD 81 (350)
Q Consensus 2 p~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 81 (350)
|.+|++++ ++|||.+|||+||++||++||+||||+|+||++.++.. +..+++ ++ +. .+.+
T Consensus 203 ~~~~~~~~-~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~----l~~~dg-~~-----~y---------~~~~ 262 (639)
T PRK14706 203 VTGYYAPT-SRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESG----LAHFDG-GP-----LY---------EYAD 262 (639)
T ss_pred cccccccc-cccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhh----hhccCC-Cc-----ce---------eccC
Confidence 57999999 99999999999999999999999999999999876421 111111 00 00 0011
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC----------------------CHHHHH
Q 018833 82 GQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY----------------------APSITK 139 (350)
Q Consensus 82 ~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~----------------------~~~~~~ 139 (350)
+...+ ...|.+ ..+|+.+++||++|++++++|++|+||||||+|++.+| ...||+
T Consensus 263 ~~~g~--~~~w~~-~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~ 339 (639)
T PRK14706 263 PRKGY--HYDWNT-YIFDYGRNEVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLK 339 (639)
T ss_pred CcCCc--CCCCCC-cccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCcccccccccCCcccHHHHHHHH
Confidence 10000 112222 23899999999999999999999999999999998886 135777
Q ss_pred HH---HHhcCC-CcEEEeecCCCCCCCCCCCCCCCCcchhHHHHHHHhcCCceeEecccchHHHHHhh-ccccccccccc
Q 018833 140 VY---MENTSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV-QGELWRLKDSN 214 (350)
Q Consensus 140 ~~---~~~~~p-~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~g~~~~~~~~~ 214 (350)
.+ +++.+| +++|||.+..-+- ....... ..+++..++..+++.+...+ .....+.....
T Consensus 340 ~ln~~v~~~~p~~~~iAE~~~~~~~---------------v~~~~~~-G~gFD~~w~~~w~~~~l~~~~~~~~~r~~~~~ 403 (639)
T PRK14706 340 RLNEVTHHMAPGCMMIAEESTSFPG---------------VTVPTPY-GLGFDYKWAMGWMNDTLAYFEQDPLWRKYHHH 403 (639)
T ss_pred HHHHHHHHhCCCeEEEEECCCCCcC---------------cccccCC-CCccccEeccHHHHHHHHHhccCchhhhhchh
Confidence 77 555677 7899999863110 0000101 22344444444444333322 22222211110
Q ss_pred CCCCCcccCCCCcccccccCCCCCcCCC--C---CCCC----cchHHHHHHHHHcCCCceeEecCCCCC-----------
Q 018833 215 GKPPGFIGILPQNAVTFIDNHDTGSTQR--L---WPFP----SDKVMLGYAYILTHPGTPCIFYDHFFD----------- 274 (350)
Q Consensus 215 ~~~~~~~~~~~~~~v~f~~nHD~~r~~~--~---~~~~----~~~~~~a~a~ll~~pG~P~iy~G~~~~----------- 274 (350)
............+ ..+++|||+.+... + ..+. .+++++++++++|+||+|+||||+|++
T Consensus 404 ~lt~~~~y~~~e~-~il~~SHDev~~~k~sl~~k~~g~~~~~~a~~r~~~~~~~t~PG~pLiFmG~EfG~~~ew~~~~~l 482 (639)
T PRK14706 404 KLTFFNVYRTSEN-YVLAISHDEVVHLKKSMVMKMPGDWYTQRAQYRAFLAMMWTTPGKKLLFMGQEFAQGTEWNHDASL 482 (639)
T ss_pred ccchhhhhhcccc-EecCCCCccccCCccchHhHcCCCHHHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCCcccCC
Confidence 0000000001112 23789999977532 1 1111 256889999999999999999999875
Q ss_pred -C---------chHHHHHHHHHHHHhcCccCCcc-----eEEEec---CCCEEEEEEC-----CEEEEEeCCCCC-----
Q 018833 275 -W---------GLKEAISKLAAVRNRNGINTASR-----VNILAS---DADVYIAAIG-----DRVIMKIGPKMD----- 326 (350)
Q Consensus 275 -w---------~l~~~~~~L~~lR~~~~~l~~g~-----~~~~~~---~~~~~~~~r~-----~~~lv~~n~~~~----- 326 (350)
| ++.+++++|++||+++|+|..|+ ++++.. +++|+||.|. +++|||+|.+..
T Consensus 483 ~W~l~~~~~~~~l~~~~k~L~~L~k~~paL~~gd~~~~~f~wi~~~d~~~~VlaF~R~~~~~~~~vlvV~Nfs~~~~~~y 562 (639)
T PRK14706 483 PWYLTDVPDHRGVMNLVRRLNQLYRERPDWHRGDKREEGLYWVSADDTDNSVYAYVRRDSESGAWSLAVANLTPVYREQY 562 (639)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHhCHHHhhCCCCCCCeEEEEeecCCCCEEEEEEecCCCCeeEEEEEeCCCCCcCCe
Confidence 4 27889999999999999997665 455443 3579999992 248999999742
Q ss_pred -CCCcCCCCcEEEEcCC
Q 018833 327 -IGNLIPSDFKVAADGT 342 (350)
Q Consensus 327 -~~~~~~~~~~~~~~~~ 342 (350)
++-..++.|+.++|++
T Consensus 563 ~ig~p~~g~~~~i~nsd 579 (639)
T PRK14706 563 RIGVPQGGEYRVLLSTD 579 (639)
T ss_pred EECCCCCCeEEEEEcCC
Confidence 2333455888887765
No 14
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=100.00 E-value=9.6e-43 Score=320.67 Aligned_cols=251 Identities=25% Similarity=0.447 Sum_probs=171.7
Q ss_pred CCcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCC----------CcccceeecCCCCCCCCCCCCCc
Q 018833 2 PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD----------GRGIYCIFEGGTSDDRLDWGPSF 71 (350)
Q Consensus 2 p~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~----------~~~~~~~~~~~~~~~~~~w~~~~ 71 (350)
|.||++|| |+|||++||++||++||++||+||||+|+||+|.+|++ +.++|+.|.++...++.+|....
T Consensus 38 ~~d~~~vd-~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (316)
T PF00128_consen 38 PSDYYAVD-PRFGTMEDFKELVDAAHKRGIKVILDVVPNHTSDDHPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYF 116 (316)
T ss_dssp ESEEEEES-TTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEETTSHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCST
T ss_pred ceeeeccc-cccchhhhhhhhhhccccccceEEEeeeccccccccccccccccccccccccceeeccccccccccccccc
Confidence 68999999 99999999999999999999999999999999999863 24556665433223333332110
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcC---C-
Q 018833 72 ICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTS---P- 147 (350)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~---p- 147 (350)
....|...... ....++..+++||++||+||++|++++++|++ .||||||+|+|++++.++|+++.++++ |
T Consensus 117 ---~~~~~~~~~~~-~~~~~~~~~~dln~~n~~v~~~i~~~~~~w~~-~giDGfR~D~~~~~~~~~~~~~~~~~~~~~~~ 191 (316)
T PF00128_consen 117 ---GGSNWEYDDWG-DEYQFWSDLPDLNYENPEVREYIIDVLKFWIE-EGIDGFRLDAAKHIPKEFWKEFRDEVKEEKPD 191 (316)
T ss_dssp ---TTSSEESCHHT-HCHSSSTTSEEBETTSHHHHHHHHHHHHHHHH-TTESEEEETTGGGSSHHHHHHHHHHHHHHHTT
T ss_pred ---ccccccccccc-cccccccccchhhhhhhhhhhhhcccccchhh-ceEeEEEEccccccchhhHHHHhhhhhhhccc
Confidence 00111110000 00357899999999999999999999999998 889999999999999999999955543 5
Q ss_pred CcEEEeecCCCCCCCCCCCCCCCCcchhHHHHHH-HhcCCceeEecccchHHHHHhh---c-cc--ccccccccCCCCCc
Q 018833 148 DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWV-QAAGGAVAAFDFTTKGILQAAV---Q-GE--LWRLKDSNGKPPGF 220 (350)
Q Consensus 148 ~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~---~-g~--~~~~~~~~~~~~~~ 220 (350)
.+++||++... ...+..+. .........+++.......... . +. ...+..........
T Consensus 192 ~~~i~E~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (316)
T PF00128_consen 192 FFLIGEVWGGD---------------NEDLRQYAYDGYFDLDSVFDFPDYGLRSSFFDFWRHGDGDASDLANWLSSWQSS 256 (316)
T ss_dssp SEEEEEESSSS---------------HHHHHHHHHHGTTSHSEEEHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHH
T ss_pred cceeeeeccCC---------------ccccchhhhccccccchhhcccccccccchhhhhccccchhhhhhhhhhhhhhh
Confidence 77999999752 12222222 2222233456665544444332 1 11 11111110000000
Q ss_pred ccCCCCcccccccCCCCCcCCCCCCCCcchHHHHHHHHHcCCCceeEecCCCCC
Q 018833 221 IGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFD 274 (350)
Q Consensus 221 ~~~~~~~~v~f~~nHD~~r~~~~~~~~~~~~~~a~a~ll~~pG~P~iy~G~~~~ 274 (350)
. ..+...++|++|||++|..+..+....++++|++++||+||+|+||||||++
T Consensus 257 ~-~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~~~ll~~pG~P~iy~G~E~g 309 (316)
T PF00128_consen 257 Y-PDPYRAVNFLENHDTPRFASRFGNNRDRLKLALAFLLTSPGIPMIYYGDEIG 309 (316)
T ss_dssp S-TTGGGEEEESSHTTSSTHHHHTTTHHHHHHHHHHHHHHSSSEEEEETTGGGT
T ss_pred h-cccceeeecccccccccchhhhcccchHHHHHHHHHHcCCCccEEEeChhcc
Confidence 0 0134678999999999988777644448999999999999999999999986
No 15
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=100.00 E-value=1.1e-40 Score=324.99 Aligned_cols=274 Identities=21% Similarity=0.233 Sum_probs=184.3
Q ss_pred CCcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCCCCCC
Q 018833 2 PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSD 81 (350)
Q Consensus 2 p~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 81 (350)
|.||++|+ ++|||+++||+||++||++||+||||+|+||++.++.. ... ..+ |+.. .
T Consensus 146 ~~~~~~~~-~~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~~~-----~~~-----~~~--y~~~---~------- 202 (542)
T TIGR02402 146 GVLPYAPH-NAYGGPDDLKALVDAAHGLGLGVILDVVYNHFGPEGNY-----LPR-----YAP--YFTD---R------- 202 (542)
T ss_pred ccCccccc-cccCCHHHHHHHHHHHHHCCCEEEEEEccCCCCCcccc-----ccc-----cCc--cccC---C-------
Confidence 67999999 99999999999999999999999999999999866431 100 000 1110 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCH---HHHHHHHHHHHHHHHhcCCCeEEecccCCCCH----HHHHHH---HHhcCC----
Q 018833 82 GQGNDDTGEDFQPAPDIDHLNP---RVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP----SITKVY---MENTSP---- 147 (350)
Q Consensus 82 ~~~~~~~~~~~~~~~dln~~n~---~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~----~~~~~~---~~~~~p---- 147 (350)
. .....+++|+.+| +||++|++++++|++++||||||+|+++++.. .||+++ +++++|
T Consensus 203 ----~----~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~ 274 (542)
T TIGR02402 203 ----Y----STPWGAAINFDGPGSDEVRRYILDNALYWLREYHFDGLRLDAVHAIADTSAKHILEELAREVHELAAELRP 274 (542)
T ss_pred ----C----CCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhccccHHHHHHHHHHHHHHHCCCCce
Confidence 0 0111246999999 99999999999999999999999999998853 488887 455555
Q ss_pred CcEEEeecCCCC-CCCCCCCCCCCCcchhHHHHHHHhcCCceeEecccchHHHHHhhcccc-------------------
Q 018833 148 DFAVGEKWDSLS-YGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGEL------------------- 207 (350)
Q Consensus 148 ~~~~~E~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~------------------- 207 (350)
+++|||.+...+ +.... .....++++.++..++..++..+.|+.
T Consensus 275 ~~li~E~~~~~~~~~~~~----------------~~~~~~~d~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~l~~~l~ 338 (542)
T TIGR02402 275 VHLIAESDLNDPSLVTPR----------------EDGGYGLDAQWNDDFHHALHVLLTGERQGYYADFGDPLAALAKTLR 338 (542)
T ss_pred EEEEEecCCCCCcccccc----------------cCCccceEEEECchHHHHHHHHhcCCcceeecccCcCHHHHHHHHH
Confidence 469999885321 11000 000011233333333333333332211
Q ss_pred ---------cccccccCCCCCcccCCCCcccccccCCCC-------CcCCCCCCCCcchHHHHHHHHHcCCCceeEecCC
Q 018833 208 ---------WRLKDSNGKPPGFIGILPQNAVTFIDNHDT-------GSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDH 271 (350)
Q Consensus 208 ---------~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~-------~r~~~~~~~~~~~~~~a~a~ll~~pG~P~iy~G~ 271 (350)
..........+. ....+.+.++|++|||+ +|+..... .++.++|.+++||+||+|||||||
T Consensus 339 ~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~vnfl~nHD~~gn~~~~~Rl~~~~~--~~~~~la~alllt~pGiP~Iy~Gq 415 (542)
T TIGR02402 339 DGFVYDGEYSPFRGRPHGRPS-GDLPPHRFVVFIQNHDQIGNRALGERLSQLLS--PGSLKLAAALLLLSPYTPLLFMGE 415 (542)
T ss_pred HhcccCccccccccccCCCCC-CCCCHHHEEEEccCcccccccchhhhhhhcCC--HHHHHHHHHHHHHcCCCceeeccH
Confidence 000000000000 00124567999999997 56655443 368999999999999999999998
Q ss_pred CC-----------------------------------------------------CC---------chHHHHHHHHHHHH
Q 018833 272 FF-----------------------------------------------------DW---------GLKEAISKLAAVRN 289 (350)
Q Consensus 272 ~~-----------------------------------------------------~w---------~l~~~~~~L~~lR~ 289 (350)
|+ +| ++++++|+|++|||
T Consensus 416 E~g~~~~~~ff~d~~~~~l~~~v~~gr~~e~~~~~~~~~~~pdp~~~~~~~~~~~~W~~~~~~~~~~~~~~yr~Li~lRk 495 (542)
T TIGR02402 416 EYGATTPFQFFTDHPDPELAQAVREGRKKEFARFGWDPEDVPDPQDEETFLRSKLDWAEAESGEHARWLAFYRDLLALRR 495 (542)
T ss_pred hhcCCCCCccccCCCCHHHHHHHHHhHHHHHHhcccccccCCCCCchhhHhhccCCcccccccchHHHHHHHHHHHHHhc
Confidence 42 36 27899999999999
Q ss_pred hcCccCCcceEEEe----cCCCEEEEEE-CCEEEEEeCCCC
Q 018833 290 RNGINTASRVNILA----SDADVYIAAI-GDRVIMKIGPKM 325 (350)
Q Consensus 290 ~~~~l~~g~~~~~~----~~~~~~~~~r-~~~~lv~~n~~~ 325 (350)
++++|+.+..+.+. .++.++++.. +++++|++|.+.
T Consensus 496 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~N~~~ 536 (542)
T TIGR02402 496 ELPVLLLPGARALEVVVDEDPGWVAVRFGRGELVLAANLST 536 (542)
T ss_pred cCccccCCCcccceeeecCCCCEEEEEECCCeEEEEEeCCC
Confidence 99999877654432 3456887776 678999999853
No 16
>PRK05402 glycogen branching enzyme; Provisional
Probab=100.00 E-value=5.8e-40 Score=330.74 Aligned_cols=303 Identities=16% Similarity=0.204 Sum_probs=188.7
Q ss_pred CCcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCCCCCC
Q 018833 2 PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSD 81 (350)
Q Consensus 2 p~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 81 (350)
|.||++|+ ++|||++|||+||++||++||+||||+|+||++.++.. +..+++. + .+. +.+
T Consensus 301 ~~~y~ai~-~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~~~~----~~~~~~~-~----~y~----------~~~ 360 (726)
T PRK05402 301 PTGYYAPT-SRFGTPDDFRYFVDACHQAGIGVILDWVPAHFPKDAHG----LARFDGT-A----LYE----------HAD 360 (726)
T ss_pred cccCCCcC-cccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCccc----hhccCCC-c----cee----------ccC
Confidence 67999999 99999999999999999999999999999999876421 1111110 0 000 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC------------------------CHHH
Q 018833 82 GQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY------------------------APSI 137 (350)
Q Consensus 82 ~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~------------------------~~~~ 137 (350)
..... ...+. ..++|+.||+||++|++++++|++++||||||+|++.++ +.+|
T Consensus 361 ~~~~~--~~~w~-~~~~n~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f 437 (726)
T PRK05402 361 PREGE--HPDWG-TLIFNYGRNEVRNFLVANALYWLEEFHIDGLRVDAVASMLYLDYSRKEGEWIPNIYGGRENLEAIDF 437 (726)
T ss_pred CcCCc--cCCCC-CccccCCCHHHHHHHHHHHHHHHHHhCCcEEEECCHHHhhhccccccccccccccccCcCCHHHHHH
Confidence 00000 01111 236899999999999999999999999999999987654 2468
Q ss_pred HHHH---HHhcCC-CcEEEeecCCCCCCCCCCCCCCCCcchhHHHHHHHhcCCceeEecccchHHHHHhh-ccccccccc
Q 018833 138 TKVY---MENTSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV-QGELWRLKD 212 (350)
Q Consensus 138 ~~~~---~~~~~p-~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~g~~~~~~~ 212 (350)
|+++ +++.+| +++|||........ ..+ ......+++..+++.++..+...+ .....+...
T Consensus 438 l~~~~~~~~~~~p~~~liaE~~~~~~~~--~~~-------------~~~~G~gfd~~wn~~~~~~~l~~~~~~~~~~~~~ 502 (726)
T PRK05402 438 LRELNAVVHEEFPGALTIAEESTAWPGV--TRP-------------TEEGGLGFGYKWNMGWMHDTLDYMERDPIYRKYH 502 (726)
T ss_pred HHHHHHHHHHHCCCeEEEEECCCCCcCc--ccc-------------ccCCCCCCCceecCCcchHHHHHHhhCccccccc
Confidence 8888 555677 77999965421100 000 000011123333333333222221 111111000
Q ss_pred ccCCCCCcccCCCCcccccccCCCCCc-----CCCCCCCC----cchHHHHHHHHHcCCCceeEecCCCC----------
Q 018833 213 SNGKPPGFIGILPQNAVTFIDNHDTGS-----TQRLWPFP----SDKVMLGYAYILTHPGTPCIFYDHFF---------- 273 (350)
Q Consensus 213 ~~~~~~~~~~~~~~~~v~f~~nHD~~r-----~~~~~~~~----~~~~~~a~a~ll~~pG~P~iy~G~~~---------- 273 (350)
..............+ ..+++|||+.+ +....... .+++++++++++|+||+||||||+|+
T Consensus 503 ~~~~~~~~~~~~~e~-~~l~~sHD~~~~g~~~l~~~~~g~~~~~~~~lrl~~~~~~t~pG~Plif~G~E~g~~~~~~~~~ 581 (726)
T PRK05402 503 HNELTFSLLYAYSEN-FVLPLSHDEVVHGKGSLLGKMPGDDWQKFANLRAYYGYMWAHPGKKLLFMGGEFGQGREWNHDA 581 (726)
T ss_pred ccchhHHHhHhhhcc-ccCCCCCceeeeCcccHHhhCCCCHHHHHHHHHHHHHHHHHCCCcCEeeCchhcCCCCCCCccC
Confidence 000000000001111 34678999953 22222222 24688999999999999999999964
Q ss_pred --CC---------chHHHHHHHHHHHHhcCccCCc-----ceEEEec---CCCEEEEEEC-----CEEEEEeCCCCCC--
Q 018833 274 --DW---------GLKEAISKLAAVRNRNGINTAS-----RVNILAS---DADVYIAAIG-----DRVIMKIGPKMDI-- 327 (350)
Q Consensus 274 --~w---------~l~~~~~~L~~lR~~~~~l~~g-----~~~~~~~---~~~~~~~~r~-----~~~lv~~n~~~~~-- 327 (350)
+| ++.+++|+|++||+++|+|+.| .++++.. ++.|++|.|. ++++||+|.+...
T Consensus 582 ~l~W~~~~~~~~~~l~~~~k~Li~Lr~~~~aL~~g~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~vlvv~N~~~~~~~ 661 (726)
T PRK05402 582 SLDWHLLDFPWHRGVQRLVRDLNHLYRAEPALHELDFDPEGFEWIDADDAENSVLSFLRRGKDDGEPLLVVCNFTPVPRH 661 (726)
T ss_pred cCCccccCCcchHHHHHHHHHHHHHHHhChhhhccccCcCCeeEEecccCCCCEEEEEEecCCCCCeEEEEEeCCCCccc
Confidence 46 3888999999999999999755 4555543 3579999992 5799999986421
Q ss_pred ----CCcCCCCcEEEEcCCc
Q 018833 328 ----GNLIPSDFKVAADGTD 343 (350)
Q Consensus 328 ----~~~~~~~~~~~~~~~~ 343 (350)
+-...+.|+..++++.
T Consensus 662 ~y~i~~p~~g~~~~ilnsd~ 681 (726)
T PRK05402 662 DYRLGVPQAGRWREVLNTDA 681 (726)
T ss_pred ceEECCCCCCeEEEEEcCcc
Confidence 2122357888887653
No 17
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=100.00 E-value=1.8e-39 Score=322.73 Aligned_cols=306 Identities=19% Similarity=0.299 Sum_probs=196.9
Q ss_pred CCcccCCCCCCC---CCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCCC
Q 018833 2 PGRLYDLDASKY---GSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKE 78 (350)
Q Consensus 2 p~d~~~id~~~~---Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 78 (350)
|.||++++ ++| |+++|||+||++||++||+||||+|+|||+..+.... ...+.+- . ...|+....
T Consensus 228 ~~~y~a~d-~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~--~~~~~~~--d-~~~yy~~~~------ 295 (688)
T TIGR02100 228 TLGFFAPE-PRYLASGQVAEFKTMVRALHDAGIEVILDVVYNHTAEGNELGP--TLSFRGI--D-NASYYRLQP------ 295 (688)
T ss_pred cccccccC-hhhcCCCCHHHHHHHHHHHHHCCCEEEEEECcCCccCcCCCCC--cccccCC--C-CCcceEecC------
Confidence 78999999 999 6799999999999999999999999999997764211 0111110 0 011111000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCH---------HHHHHHHHh-cCC-
Q 018833 79 YSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP---------SITKVYMEN-TSP- 147 (350)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~---------~~~~~~~~~-~~p- 147 (350)
+..+.+. ......+++|+++|.|+++|++++++|++++||||||+|++..+.. ++++++.+. +.|
T Consensus 296 --~~~~~~~--~~~g~gn~ln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~d~~~~~ 371 (688)
T TIGR02100 296 --DDKRYYI--NDTGTGNTLNLSHPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQDPVLAQ 371 (688)
T ss_pred --CCCceec--CCCCccccccCCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHhCcccCC
Confidence 0000110 1123346899999999999999999999989999999999998753 577777553 345
Q ss_pred CcEEEeecCCCC--CCCCCCCCCCCCcchhHHHHHHHhcCCceeEecccchHHHHHhhcccc---cccccccCCCCCcc-
Q 018833 148 DFAVGEKWDSLS--YGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGEL---WRLKDSNGKPPGFI- 221 (350)
Q Consensus 148 ~~~~~E~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~- 221 (350)
+++|||.|.... +..+..+ ...+.++..+...++..+.|.. ..+.........++
T Consensus 372 ~~ligE~W~~~~~~~~~~~~~-------------------~~~~~~Nd~frd~ir~f~~g~~~~~~~~~~~l~gs~~~~~ 432 (688)
T TIGR02100 372 VKLIAEPWDIGPGGYQVGNFP-------------------PGWAEWNDRYRDDMRRFWRGDAGMIGELANRLTGSSDLFE 432 (688)
T ss_pred eEEEEeeecCCCCcccccCCC-------------------CceEEecHHHHHHHHHHHcCCCCcHHHHHHHHhCCHhhcc
Confidence 679999997532 1111111 0123455555555655554431 11111111100011
Q ss_pred --cCCCCcccccccCCCCCcCCCCCC----------C----------------------------CcchHHHHHHHHHcC
Q 018833 222 --GILPQNAVTFIDNHDTGSTQRLWP----------F----------------------------PSDKVMLGYAYILTH 261 (350)
Q Consensus 222 --~~~~~~~v~f~~nHD~~r~~~~~~----------~----------------------------~~~~~~~a~a~ll~~ 261 (350)
...|..+|+|+++||+-++...+. . ..++++++++++|++
T Consensus 433 ~~~~~~~~~iNyv~~HD~~tl~D~~~~~~khn~~nge~n~dg~~~N~S~n~g~eG~~~~~~~~~~r~~~~r~~~a~l~~s 512 (688)
T TIGR02100 433 HNGRRPWASINFVTAHDGFTLRDLVSYNEKHNEANGENNRDGHNDNYSWNCGVEGPTDDPAINALRRRQQRNLLATLLLS 512 (688)
T ss_pred ccCCCcCEEEEEEeCCCCchHHHHHHhhccchhhccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 124567899999999955322100 0 123688999999999
Q ss_pred CCceeEecCCCCC--------------------C-------chHHHHHHHHHHHHhcCccCCcce-------------EE
Q 018833 262 PGTPCIFYDHFFD--------------------W-------GLKEAISKLAAVRNRNGINTASRV-------------NI 301 (350)
Q Consensus 262 pG~P~iy~G~~~~--------------------w-------~l~~~~~~L~~lR~~~~~l~~g~~-------------~~ 301 (350)
||+||||||||++ | ++++++|+|++||++||+|+.+.+ ++
T Consensus 513 ~GiP~i~~GdE~g~t~~G~~n~y~~~~~~~~~dW~~~~~~~~l~~~~k~Li~lRk~~~~l~~~~~~~~~~~~~~~~~v~~ 592 (688)
T TIGR02100 513 QGTPMLLAGDEFGRTQQGNNNAYCQDNEIGWVDWSLDEGDDELLAFTKKLIALRKAHPVLRRERFFDGRNEADGLKDVTW 592 (688)
T ss_pred CCCceeeecHhhccCCCCCCCCccCCCcccccCcccccccHHHHHHHHHHHHHHHhCchhcccccccCCcccCCCCceEE
Confidence 9999999999653 5 489999999999999999976543 33
Q ss_pred Eec-------------CCCEEEEEE-C----------CEEEEEeCCCCCC-CCcCC---CCcEEEEcCC
Q 018833 302 LAS-------------DADVYIAAI-G----------DRVIMKIGPKMDI-GNLIP---SDFKVAADGT 342 (350)
Q Consensus 302 ~~~-------------~~~~~~~~r-~----------~~~lv~~n~~~~~-~~~~~---~~~~~~~~~~ 342 (350)
+.. ...+++|.. + +.++|++|.+... ....| ..|++++++.
T Consensus 593 ~~~~G~~~~~~~w~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~~N~~~~~~~~~lP~~~~~w~~~~dt~ 661 (688)
T TIGR02100 593 LNADGEPMTEEDWENPETRLLCMVLSDMDPGGDPGADDSLLLLLNAGPEPVPFKLPGGGGRWELVLDTA 661 (688)
T ss_pred eCCCCCcCChhhcCCCCCCEEEEEEeCCccCCCCCCCCeEEEEECCCCCCeEEECCCCCCcEEEEecCC
Confidence 321 236788875 1 3689999986431 11122 3788887763
No 18
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=3.7e-39 Score=336.81 Aligned_cols=265 Identities=16% Similarity=0.227 Sum_probs=178.1
Q ss_pred CCcccCCCCCCCC--CHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCCCC
Q 018833 2 PGRLYDLDASKYG--SQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEY 79 (350)
Q Consensus 2 p~d~~~id~~~~G--t~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 79 (350)
|.||+++| |+|| +.+|||+||++||++||+||||+|+|||+.++... +.+ .+.+. ....|+... ..
T Consensus 231 ~~~yfa~d-p~yg~~~~~efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~-p~~-~~~~~---d~~~yy~~~-~~----- 298 (1221)
T PRK14510 231 TVAFLAPD-PRLAPGGEEEFAQAIKEAQSAGIAVILDVVFNHTGESNHYG-PTL-SAYGS---DNSPYYRLE-PG----- 298 (1221)
T ss_pred CCCCCCcC-hhhccCcHHHHHHHHHHHHHCCCEEEEEEccccccCCCCCC-Ccc-cccCC---CCCCceEec-CC-----
Confidence 68999999 9999 99999999999999999999999999999775421 000 00000 000111000 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC---CHHHHHHH---HHhcCC-Cc---
Q 018833 80 SDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY---APSITKVY---MENTSP-DF--- 149 (350)
Q Consensus 80 ~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~---~~~~~~~~---~~~~~p-~~--- 149 (350)
....+........ .+|+++|.|++++++++++|++ +||||||||+|+++ +.+||+.+ +++++| .+
T Consensus 299 --~~~~y~~~~G~gn--~~n~~~p~v~~~i~d~lr~Wv~-~gVDGfRfDla~~l~r~~~~f~~~~~~~l~ai~~d~~l~~ 373 (1221)
T PRK14510 299 --NPKEYENWWGCGN--LPNLERPFILRLPMDVLRSWAK-RGVDGFRLDLADELAREPDGFIDEFRQFLKAMDQDPVLRR 373 (1221)
T ss_pred --CCCcccCCCCCCC--ccccCCHHHHHHHHHHHHHHHH-hCCCEEEEechhhhccCccchHHHHHHHHHHhCCCcCccc
Confidence 0011111112222 3566799999999999999999 99999999999999 88898876 666665 33
Q ss_pred --EEEeecCCCC--CCCCCCCCCCCCcchhHHHHHHHhcCCceeEecccchHHHHHhhccccc---ccccccCCCCCcc-
Q 018833 150 --AVGEKWDSLS--YGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELW---RLKDSNGKPPGFI- 221 (350)
Q Consensus 150 --~~~E~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~- 221 (350)
+|||.|...+ +..+..+. ..+.+++.+...++..+.|+.. .+..........+
T Consensus 374 ~~ligE~Wd~~~~~~~~g~f~~-------------------~~~~~N~~frd~vr~f~~g~~~~~~~~a~~l~gs~d~~~ 434 (1221)
T PRK14510 374 LKMIAEVWDDGLGGYQYGKFPQ-------------------YWGEWNDPLRDIMRRFWLGDIGMAGELATRLAGSADIFP 434 (1221)
T ss_pred CcEEEecccCCCCccccCCCCc-------------------ceeeeccHHHHHHHHHhcCCCchHHHHHHHHhCcHhhcC
Confidence 4999997532 11111111 1234666777777776655421 1111111101111
Q ss_pred --cCCCCcccccccCCCCCcCCCCCCC--------------------------------------CcchHHHHHHHHHcC
Q 018833 222 --GILPQNAVTFIDNHDTGSTQRLWPF--------------------------------------PSDKVMLGYAYILTH 261 (350)
Q Consensus 222 --~~~~~~~v~f~~nHD~~r~~~~~~~--------------------------------------~~~~~~~a~a~ll~~ 261 (350)
...+..+++|++|||+.|+...... ...+++++++++|++
T Consensus 435 ~~~~~~~~~iNfi~~HD~~rl~dl~~y~~khN~ange~nrdg~~~n~s~n~g~eg~t~~~~~~~~r~~~~r~a~~~l~~s 514 (1221)
T PRK14510 435 HRRRNFSRSINFITAHDGFTLLDLVSFNHKHNEANGEDNRDGTPDNQSWNCGVEGYTLDAAIRSLRRRRLRLLLLTLMSF 514 (1221)
T ss_pred ccCCCcccceEEEeeCCchHHHHHhhhccccchhccccccCCCCccccccccccCCCCchHHHHHHHHHHHHHHHHHHhC
Confidence 1235678999999999775443220 023578999999999
Q ss_pred CCceeEecCCCCC--------------------C-----chHHHHHHHHHHHHhcCccCCcceEEE
Q 018833 262 PGTPCIFYDHFFD--------------------W-----GLKEAISKLAAVRNRNGINTASRVNIL 302 (350)
Q Consensus 262 pG~P~iy~G~~~~--------------------w-----~l~~~~~~L~~lR~~~~~l~~g~~~~~ 302 (350)
||+||||||||++ | ++++++++|++||++||+|+.|.+...
T Consensus 515 ~GiP~Iy~GdE~g~tq~Gn~n~y~~~~~r~~~~W~~~~~~l~~f~k~Li~lRk~~~~L~~g~~~~~ 580 (1221)
T PRK14510 515 PGVPMLYYGDEAGRSQNGNNNGYAQDNNRGTYPWGNEDEELLSFFRRLIKLRREYGVLRQGEFSSG 580 (1221)
T ss_pred CCCcEEecchhcccccCCCCCCCCCCCccccCCcccccHHHHHHHHHHHHHHHhChhhccCccccC
Confidence 9999999999865 4 489999999999999999998887654
No 19
>PRK03705 glycogen debranching enzyme; Provisional
Probab=100.00 E-value=8.9e-39 Score=315.54 Aligned_cols=301 Identities=19% Similarity=0.272 Sum_probs=189.1
Q ss_pred CCcccCCCCCCCCCH-----HHHHHHHHHHHHCCCEEEEEEeccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCC
Q 018833 2 PGRLYDLDASKYGSQ-----ADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGD 76 (350)
Q Consensus 2 p~d~~~id~~~~Gt~-----~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 76 (350)
|.||++++ ++|||. +|||+||++||++||+||||+|+|||+..+.. ..+..+.+-.. ....|
T Consensus 223 ~~~yfa~d-~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~--~~~~~~~~~d~-~~yy~--------- 289 (658)
T PRK03705 223 PLAMFALD-PAYASGPETALDEFRDAVKALHKAGIEVILDVVFNHSAELDLD--GPTLSLRGIDN-RSYYW--------- 289 (658)
T ss_pred cccccccc-cccCCCCcchHHHHHHHHHHHHHCCCEEEEEEcccCccCcCCC--CcchhcccCCC-ccceE---------
Confidence 78999999 999994 79999999999999999999999999864321 00111111000 00001
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCH--HHHHH--HHHh-----cCC
Q 018833 77 KEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP--SITKV--YMEN-----TSP 147 (350)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~--~~~~~--~~~~-----~~p 147 (350)
.+..+.+.. .....++||++||.|+++|++++++|++++||||||+|+|.++.. .+++. ++++ +.+
T Consensus 290 ---~~~~g~~~~--~~g~g~~ln~~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a~~l~~~~~~~~~~~~~~ai~~d~vl~ 364 (658)
T PRK03705 290 ---IREDGDYHN--WTGCGNTLNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLATVLGRTPEFRQDAPLFTAIQNDPVLS 364 (658)
T ss_pred ---ECCCCCcCC--CCCccCcccCCCHHHHHHHHHHHHHHHHHhCCCEEEEEcHhhhCcCcccchhhHHHHHHhhCcccc
Confidence 111111111 112346899999999999999999999999999999999998862 23322 2222 223
Q ss_pred -CcEEEeecCCCC--CCCCCCCCCCCCcchhHHHHHHHhcCCceeEecccchHHHHHhhcc-c--c----cccccccCCC
Q 018833 148 -DFAVGEKWDSLS--YGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG-E--L----WRLKDSNGKP 217 (350)
Q Consensus 148 -~~~~~E~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g-~--~----~~~~~~~~~~ 217 (350)
++++||.|.... +..+..+. ..+.++..+...++..+.+ . . .++.......
T Consensus 365 ~~~ligE~Wd~~~~~~~~g~~~~-------------------~~~~~Nd~fRd~ir~f~~~~~~~~~~~~~~l~gs~~~~ 425 (658)
T PRK03705 365 QVKLIAEPWDIGPGGYQVGNFPP-------------------PFAEWNDHFRDAARRFWLHGDLPLGEFAGRFAASSDVF 425 (658)
T ss_pred ceEEEEecccCCCChhhhcCCCc-------------------ceEEEchHHHHHHHHHHccCCCcHHHHHHHHhcchhhc
Confidence 669999997532 11111110 1234444444444444321 1 0 1111111000
Q ss_pred CCcccCCCCcccccccCCCCCcCCCCC-----------------------------CC---------CcchHHHHHHHHH
Q 018833 218 PGFIGILPQNAVTFIDNHDTGSTQRLW-----------------------------PF---------PSDKVMLGYAYIL 259 (350)
Q Consensus 218 ~~~~~~~~~~~v~f~~nHD~~r~~~~~-----------------------------~~---------~~~~~~~a~a~ll 259 (350)
. ..+..|..+|+|+++||+-++.... +. ..++.+++++++|
T Consensus 426 ~-~~~~~p~~siNyv~~HD~~TL~D~~~~~~~hn~~nge~n~dg~~~n~s~n~g~eg~~~~~~~~~~r~~~~r~~~a~l~ 504 (658)
T PRK03705 426 K-RNGRLPSASINLVTAHDGFTLRDCVCFNQKHNEANGEENRDGTNNNYSNNHGKEGLGADLDLVERRRASIHALLTTLL 504 (658)
T ss_pred c-ccCCCCCeEEEEEEeCCCccHHHHHhhhccchhhcccccccccccccccccCccCCCccHHHHHHHHHHHHHHHHHHH
Confidence 0 0112567889999999984332210 00 1135688999999
Q ss_pred cCCCceeEecCCCCC--------------------C-----chHHHHHHHHHHHHhcCccCCcce--------EEEecC-
Q 018833 260 THPGTPCIFYDHFFD--------------------W-----GLKEAISKLAAVRNRNGINTASRV--------NILASD- 305 (350)
Q Consensus 260 ~~pG~P~iy~G~~~~--------------------w-----~l~~~~~~L~~lR~~~~~l~~g~~--------~~~~~~- 305 (350)
+++|+||||+|||++ | ++++++|+|++||++||+|+...+ +++..+
T Consensus 505 ~sqG~P~i~~GdE~grtq~G~nN~y~~~~~i~~~dW~~~~~~l~~f~k~Li~lRk~~~~l~~~~~~~~~~~~~~w~~~~~ 584 (658)
T PRK03705 505 LSQGTPMLLAGDEHGHSQHGNNNAYCQDNALTWLDWSQADRGLTAFTAALIHLRQRIPALTQNRWWEEGDGNVRWLNRQA 584 (658)
T ss_pred HcCCchHHHhhHHhccCCCCCCCCccCCCCccccccchhhhHHHHHHHHHHHHHHhChhhcccccccCCCCCeEEeCCCC
Confidence 999999999999653 4 499999999999999999965443 343322
Q ss_pred -----------CCEEEEEECCEEEEEeCCCCC-CCC-cCCCCcEEEEc
Q 018833 306 -----------ADVYIAAIGDRVIMKIGPKMD-IGN-LIPSDFKVAAD 340 (350)
Q Consensus 306 -----------~~~~~~~r~~~~lv~~n~~~~-~~~-~~~~~~~~~~~ 340 (350)
...+++...+.++|++|.+.. ..- ++...|+++++
T Consensus 585 ~~~~~~~w~~~~~~~~~~~~~~~~v~~N~~~~~~~~~lp~~~w~~~~~ 632 (658)
T PRK03705 585 QPLSADEWQQGPKQLQILLSDRWLIAINATLEVTEIVLPEGEWHAIPP 632 (658)
T ss_pred CcCChhHhCCcceEEEEEECCCEEEEECCCCCCeEEECCCcceEEEEc
Confidence 245667667789999998642 111 22257888853
No 20
>PRK12568 glycogen branching enzyme; Provisional
Probab=100.00 E-value=7.7e-38 Score=307.81 Aligned_cols=302 Identities=16% Similarity=0.184 Sum_probs=196.1
Q ss_pred CCcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCCCCCC
Q 018833 2 PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSD 81 (350)
Q Consensus 2 p~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 81 (350)
|.+||+++ ++|||.++||+||++||++||+||||+|+||++.+... +..|++... |. ..+
T Consensus 305 ~~~~~a~~-~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d~~~----l~~fdg~~~-----Ye----------~~d 364 (730)
T PRK12568 305 PLGLYAPT-ARHGSPDGFAQFVDACHRAGIGVILDWVSAHFPDDAHG----LAQFDGAAL-----YE----------HAD 364 (730)
T ss_pred CCcCCccC-cccCCHHHHHHHHHHHHHCCCEEEEEeccccCCccccc----cccCCCccc-----cc----------cCC
Confidence 67899999 99999999999999999999999999999999976421 111221100 00 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC------------------------HHH
Q 018833 82 GQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA------------------------PSI 137 (350)
Q Consensus 82 ~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~------------------------~~~ 137 (350)
+. .....+|..+ .+|+.+|+|+++|++++++|++++||||||+|++..|- .+|
T Consensus 365 ~~--~g~~~~W~~~-~~N~~~peVr~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~gg~en~ea~~F 441 (730)
T PRK12568 365 PR--EGMHRDWNTL-IYNYGRPEVTAYLLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHGGRENLEAVAF 441 (730)
T ss_pred Cc--CCccCCCCCe-ecccCCHHHHHHHHHHHHHHHHHhCceEEEEcCHhHhhhhccccccccccccccCCccChHHHHH
Confidence 00 0011223333 58999999999999999999999999999999986541 358
Q ss_pred HHHH---HHhcCC-CcEEEeecCCCCCCCCCCCCCCCCcchhHHHHHHHhcCCceeEecccchHHHHHhhcc-ccccccc
Q 018833 138 TKVY---MENTSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG-ELWRLKD 212 (350)
Q Consensus 138 ~~~~---~~~~~p-~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g-~~~~~~~ 212 (350)
|+++ +++.+| +++|||....-+ ...........+++..+++..++.....+.. ...+-..
T Consensus 442 l~~ln~~v~~~~P~~~~IAEest~~p---------------~vt~p~~~gGlGFd~kwn~gwm~d~l~y~~~dp~~r~~~ 506 (730)
T PRK12568 442 LRQLNREIASQFPGVLTIAEESTAWP---------------GVTAPISDGGLGFTHKWNMGWMHDTLHYMQRDPAERAHH 506 (730)
T ss_pred HHHHHHHHHHHCCCeEEEEEcCCCCc---------------cccccccCCCCCcCcEeCChhHHHHHHHHhhCchhhhhh
Confidence 8887 556678 779999754211 0000111112235555555555555544432 2222111
Q ss_pred ccCCCCCcccCCCCcccccccCCCCC-----cCCCCCCCC----cchHHHHHHHHHcCCCceeEecCCCCC---------
Q 018833 213 SNGKPPGFIGILPQNAVTFIDNHDTG-----STQRLWPFP----SDKVMLGYAYILTHPGTPCIFYDHFFD--------- 274 (350)
Q Consensus 213 ~~~~~~~~~~~~~~~~v~f~~nHD~~-----r~~~~~~~~----~~~~~~a~a~ll~~pG~P~iy~G~~~~--------- 274 (350)
......++......+ +.+..|||+- ++...+.++ .+.+|..++++++.||.||||||+|++
T Consensus 507 h~~ltf~~~y~~~e~-fvlp~SHDEvvhgk~sl~~kmpGd~~~k~a~lR~~~~~~~~~PGkkLlFmG~Efgq~~ew~~~~ 585 (730)
T PRK12568 507 HSQLTFGLVYAFSER-FVLPLSHDEVVHGTGGLLGQMPGDDWRRFANLRAYLALMWAHPGDKLLFMGAEFGQWADWNHDQ 585 (730)
T ss_pred hhhhhhhhhhhhhcc-EeccCCCcccccCchhhhhcCCCCHHHHHHHHHHHHHHHHhCCCcceeeCchhhCCcccccCCC
Confidence 100001111111122 3467899992 332223322 236788999999999999999999764
Q ss_pred ---C---------chHHHHHHHHHHHHhcCccCC-----cceEEEecC---CCEEEEEE-C-----CEEEEEeCCCCC--
Q 018833 275 ---W---------GLKEAISKLAAVRNRNGINTA-----SRVNILASD---ADVYIAAI-G-----DRVIMKIGPKMD-- 326 (350)
Q Consensus 275 ---w---------~l~~~~~~L~~lR~~~~~l~~-----g~~~~~~~~---~~~~~~~r-~-----~~~lv~~n~~~~-- 326 (350)
| ++..+++.|++||+++|||.. ..++|+..+ ++|++|.| + +.++||+|.+..
T Consensus 586 ~ldW~ll~~~~h~~~~~~~~dLn~ly~~~paL~~~d~~~~gf~wi~~~d~~~sv~af~R~~~~~~~~~v~vV~Nft~~~~ 665 (730)
T PRK12568 586 SLDWHLLDGARHRGMQQLVGDLNAALRRTPALYRGTHRADGFDWSVADDARNSVLAFIRHDPDGGGVPLLAVSNLTPQPH 665 (730)
T ss_pred CccccccCChhHHHHHHHHHHHHHHHHhChhhhcccCCCCCeEEEeCCCCCCcEEEEEEecCCCCCCeEEEEECCCCCCc
Confidence 4 277899999999999999943 346676543 47999999 2 348999998642
Q ss_pred ----CCCcCCCCcEEEEcCC
Q 018833 327 ----IGNLIPSDFKVAADGT 342 (350)
Q Consensus 327 ----~~~~~~~~~~~~~~~~ 342 (350)
+|-..++.|+..+|++
T Consensus 666 ~~Y~ig~p~~G~~~eilNsd 685 (730)
T PRK12568 666 HDYRVGVPRAGGWREILNTD 685 (730)
T ss_pred cCeEECCCCCCeEEEEEcCc
Confidence 3444456888888765
No 21
>PRK13840 sucrose phosphorylase; Provisional
Probab=100.00 E-value=1.7e-36 Score=287.44 Aligned_cols=288 Identities=16% Similarity=0.124 Sum_probs=201.6
Q ss_pred CCcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCC-----------CcccceeecCC-CC--CCCCCC
Q 018833 2 PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-----------GRGIYCIFEGG-TS--DDRLDW 67 (350)
Q Consensus 2 p~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~-----------~~~~~~~~~~~-~~--~~~~~w 67 (350)
+.||++|| |+|||++||++|++ ||+||+|+|+||||.+|++ +..+||.|.+. .+ .++.+|
T Consensus 55 v~DY~~VD-P~fGt~eDf~~L~~-----giklmlDlV~NHtS~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~ 128 (495)
T PRK13840 55 PIDHTKVD-PRLGDWDDVKALGK-----THDIMADLIVNHMSAESPQFQDVLAKGEASEYWPMFLTKDKVFPDGATEEDL 128 (495)
T ss_pred CcChhhcC-cccCCHHHHHHHHh-----CCeEEEEECCCcCCCCcHHHHHHHHhCCCCCccCeEEECCCCCcCCCCCccc
Confidence 57999999 99999999999984 9999999999999999973 34566665431 01 122334
Q ss_pred CCCccc--cC---CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC--------
Q 018833 68 GPSFIC--RG---DKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA-------- 134 (350)
Q Consensus 68 ~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~-------- 134 (350)
...+.. .. .+.+.++...++...+...+||||++||+|+++|.+++++|++ .||||||+||+.++.
T Consensus 129 ~~if~~~~g~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~NP~V~~~i~~il~fwl~-~GVDgfRLDAv~~l~K~~gt~c~ 207 (495)
T PRK13840 129 AGIYRPRPGLPFTTYTLADGKTRLVWTTFTPQQIDIDVHSAAGWEYLMSILDRFAA-SHVTLIRLDAAGYAIKKAGTSCF 207 (495)
T ss_pred ccccCCCCCCcccceEecCCCceEEeccCCcccceeCCCCHHHHHHHHHHHHHHHH-CCCCEEEEechhhhhcCCCCCcC
Confidence 322211 11 1223445445555567889999999999999999999999998 999999999986542
Q ss_pred -----HHHHHHHHHhcC--CCcEEEeecCCCCCCCCCCCCCCCCcchhHHHHHHHhcCCceeEecccchHHHHHhh-ccc
Q 018833 135 -----PSITKVYMENTS--PDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV-QGE 206 (350)
Q Consensus 135 -----~~~~~~~~~~~~--p~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~g~ 206 (350)
.++|+.+.+.++ ...+++|++..-. ... ++ .....++|+|++...+..++ .++
T Consensus 208 ~~pe~~~~l~~lr~~~~~~~~~ll~Ei~~y~~---------------~~~-~~---~~e~~~vYnF~Lp~ll~~aL~~~~ 268 (495)
T PRK13840 208 MIPETFEFIDRLAKEARARGMEVLVEIHSYYK---------------TQI-EI---AKKVDRVYDFALPPLILHTLFTGD 268 (495)
T ss_pred CChHHHHHHHHHHHHhhhcCCEEEEeCccccC---------------ccc-cc---cccccEEecchhhHHHHHHHHhCC
Confidence 346666633332 2458899875210 000 01 12478999999988777665 676
Q ss_pred ccccccccCCCCCcccCCCCcccccccCCCCCcC----------CCCC--------------------------------
Q 018833 207 LWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGST----------QRLW-------------------------------- 244 (350)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~----------~~~~-------------------------------- 244 (350)
...+..+.... |...++|++|||.-.+ ..+.
T Consensus 269 ~~~L~~~l~~~-------p~~~~n~L~~HDgIgl~d~~~~~~~~~gll~~~e~~~l~~~~~~~~~~~~~~~~~~~as~~~ 341 (495)
T PRK13840 269 VEALAHWLEIR-------PRNAVTVLDTHDGIGIIDVGADDRGLAGLLPDEQIDNLVETIHANSHGESRQATGAAASNLD 341 (495)
T ss_pred chHHHHHHHhC-------CCccEEeeecCCCCCcccccccccccccCCCHHHHHHHHHHHHHhccCceeecCCccccccc
Confidence 66666554321 4444799999998543 1100
Q ss_pred ------------CCCcchHHHHHHHHHcCCCceeEecCCCCC-----------------------C---------chHHH
Q 018833 245 ------------PFPSDKVMLGYAYILTHPGTPCIFYDHFFD-----------------------W---------GLKEA 280 (350)
Q Consensus 245 ------------~~~~~~~~~a~a~ll~~pG~P~iy~G~~~~-----------------------w---------~l~~~ 280 (350)
+...++..+|.+++|++||||+||||++++ | .+++.
T Consensus 342 ~Y~in~~~~~Al~~~d~r~lla~ai~~~~~GiP~iY~~~ll~~~ND~~~~~~t~~~R~inR~~~~~~~~~~~l~~~v~~~ 421 (495)
T PRK13840 342 LYQVNCTYYDALGRNDQDYLAARAIQFFAPGIPQVYYVGLLAGPNDMELLARTNVGRDINRHYYSTAEIDEALERPVVKA 421 (495)
T ss_pred chhhhccHHHHhcCCcHHHHHHHHHHHcCCCcceeeechhhccCccHHHHHhcCCCcccCCCCCCHHHHHHHHHHHHHHH
Confidence 011236788999999999999999998653 2 27888
Q ss_pred HHHHHHHHHhcCccCCcceEEEecCCCEEEEEE---CCEEEEEeCC
Q 018833 281 ISKLAAVRNRNGINTASRVNILASDADVYIAAI---GDRVIMKIGP 323 (350)
Q Consensus 281 ~~~L~~lR~~~~~l~~g~~~~~~~~~~~~~~~r---~~~~lv~~n~ 323 (350)
+++|+++|+++||+ .|.++....+++.+++.+ +.++.+.+|.
T Consensus 422 l~~li~~R~~~~aF-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (495)
T PRK13840 422 LNALIRFRNEHPAF-DGAFSYAADGDTSLTLSWTAGDSSASLTLDF 466 (495)
T ss_pred HHHHHHHHhcCccc-CceEEEecCCCCeEEEEEecCCceEEEEEEc
Confidence 99999999999999 578887666666777765 3455566665
No 22
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=100.00 E-value=3.9e-37 Score=290.09 Aligned_cols=289 Identities=17% Similarity=0.211 Sum_probs=201.4
Q ss_pred CCcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCC-----------Cccccee-----ecCCCCCCCC
Q 018833 2 PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-----------GRGIYCI-----FEGGTSDDRL 65 (350)
Q Consensus 2 p~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~-----------~~~~~~~-----~~~~~~~~~~ 65 (350)
+.||++|| |+|||.+||++|+++ |+||+|+|+||||.+|++ +..+||. |.++.+ +..
T Consensus 50 v~DY~~VD-P~~Gt~~Df~~L~~~-----~kvmlDlV~NHtS~~h~WFq~~~~~~~~s~y~d~fi~~~~~w~~~~~-~~~ 122 (470)
T TIGR03852 50 PMDYTEVD-PAFGDWSDVEALSEK-----YYLMFDFMINHISRQSEYYQDFLEKKDNSKYKDLFIRYKDFWPNGRP-TQE 122 (470)
T ss_pred chhhceeC-cccCCHHHHHHHHHh-----hhHHhhhcccccccchHHHHHHHhcCCCCCccceEEecccccCCCCc-ccc
Confidence 47999999 999999999999997 899999999999999962 2345554 221111 001
Q ss_pred CCCCCcccc-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC-------
Q 018833 66 DWGPSFICR-----GDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY------- 133 (350)
Q Consensus 66 ~w~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~------- 133 (350)
++..-+... ..+.+.++...++...+...+||||+.||.|++++.+++++|++ .||||||+||+.++
T Consensus 123 d~~~v~~~~~~~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~np~v~e~i~~il~fwl~-~GvdgfRLDAv~~l~K~~Gt~ 201 (470)
T TIGR03852 123 DVDLIYKRKDRAPYQEVTFADGSTEKVWNTFGEEQIDLDVTSETTKRFIRDNLENLAE-HGASIIRLDAFAYAVKKLGTN 201 (470)
T ss_pred ccccccCCCCCCCCCceEEcCCCCeEEEccCCccccccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEecchhhcccCCCC
Confidence 111000000 11233445555666778899999999999999999999999997 99999999999443
Q ss_pred ----CHH---HHHHHHHhc-CC-CcEEEeecCCCCCCCCCCCCCCCCcchhHHHHHHHhcCCceeEecccchHHHHHhh-
Q 018833 134 ----APS---ITKVYMENT-SP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV- 203 (350)
Q Consensus 134 ----~~~---~~~~~~~~~-~p-~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~- 203 (350)
.++ +++.+.+.+ .| +++++|++..-.+ .+ .......++|+|.+...+-.++
T Consensus 202 c~~l~pet~~~l~~~r~~~~~~~~~ll~E~~~~~~~------------------~~-~~gde~~mvY~F~lppl~l~al~ 262 (470)
T TIGR03852 202 DFFVEPEIWELLDEVRDILAPTGAEILPEIHEHYTI------------------QF-KIAEHGYYVYDFALPMLVLYSLY 262 (470)
T ss_pred cccCChhHHHHHHHHHHHhccCCCEEEeHhhhhccc------------------cc-ccccceeEEccCccchhhHHHhh
Confidence 233 344443322 34 7799999642111 00 0013478899999987766654
Q ss_pred cccccccccccCCCCCcccCCCCcccccccCCCCCc--------------------------CC---------C------
Q 018833 204 QGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGS--------------------------TQ---------R------ 242 (350)
Q Consensus 204 ~g~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r--------------------------~~---------~------ 242 (350)
+++...+..+.... |...++|++|||.-. .. .
T Consensus 263 ~~~~~~l~~wl~~~-------p~~~~nfL~sHDgigl~~~~glL~~~ei~~l~~~~~~~g~~~s~~~~~~~~~~~~~Y~i 335 (470)
T TIGR03852 263 SGKTNRLADWLRKS-------PMKQFTTLDTHDGIGVVDVKDLLTDEEIDYTSEELYKVGANVKKIYSTAAYNNLDIYQI 335 (470)
T ss_pred ccCHHHHHHHHHhC-------cccceEEeecCCCCCCccccccCCHHHHHHHHHHHHhcCCCccccccccccCCcCceee
Confidence 77766666665432 223369999999910 00 0
Q ss_pred ------CCCCCcchHHHHHHHHHcCCCceeEecCCCCCC--------------------------------chHHHHHHH
Q 018833 243 ------LWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDW--------------------------------GLKEAISKL 284 (350)
Q Consensus 243 ------~~~~~~~~~~~a~a~ll~~pG~P~iy~G~~~~w--------------------------------~l~~~~~~L 284 (350)
.++.+.++..+|.|++|++||+|.||||++++= .+.+.+.+|
T Consensus 336 n~t~~~aL~~~~~r~~~a~ai~~~lpGiP~iYy~~llg~~nD~~~~~rt~~~R~Inr~~~~~~~i~~~l~~~v~~~L~~l 415 (470)
T TIGR03852 336 NCTYYSALGDDDQAYLLARAIQFFAPGIPQVYYVGLLAGKNDIELLEETKEGRNINRHYYTLEEIAEEVKRPVVAKLLNL 415 (470)
T ss_pred ehhhHHHhCCCHHHHHHHHHHHHcCCCCceEEechhhcCCchHHHHHhcCCCCCCCCCCCCHHHHHHHHhhHHHHHHHHH
Confidence 011234578899999999999999999986542 256667779
Q ss_pred HHHHHhcCccCC-cceEEEecCCCEEEEEE-----CCEEEEEeCCC
Q 018833 285 AAVRNRNGINTA-SRVNILASDADVYIAAI-----GDRVIMKIGPK 324 (350)
Q Consensus 285 ~~lR~~~~~l~~-g~~~~~~~~~~~~~~~r-----~~~~lv~~n~~ 324 (350)
+++|+++||+.. |.+.....++.++++.| +.++++++|.+
T Consensus 416 i~~R~~~~aF~~~g~~~~~~~~~~~~~~~r~~~~~~~~~~~~~n~~ 461 (470)
T TIGR03852 416 LRFRNTSKAFDLDGSIDIETPSENQIEIVRTNKDGGNKAILTANLK 461 (470)
T ss_pred HHHHhhCcccCCCCceEecCCCCcEEEEEEEcCCCCceEEEEEecC
Confidence 999999999975 88887778889999987 34677777764
No 23
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=100.00 E-value=3.9e-36 Score=307.38 Aligned_cols=305 Identities=20% Similarity=0.315 Sum_probs=197.9
Q ss_pred CCcccCCCCCCCCC--------HHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCC--CcccceeecCCCCCCCCCCCCCc
Q 018833 2 PGRLYDLDASKYGS--------QADLKSLIQAFRQKGIKCLADMVINHRTAERKD--GRGIYCIFEGGTSDDRLDWGPSF 71 (350)
Q Consensus 2 p~d~~~id~~~~Gt--------~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~--~~~~~~~~~~~~~~~~~~w~~~~ 71 (350)
|.+|++++ +.||+ ++|||+||++||++||+||||+|+|||+..+.- ..+.|+.+..
T Consensus 533 p~~yfape-~~Ygtdp~dp~~ri~EfK~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~------------- 598 (1111)
T TIGR02102 533 PQNYFALS-GMYSEDPKDPELRIAEFKNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMD------------- 598 (1111)
T ss_pred cCcCcccc-cccccCCcCccccHHHHHHHHHHHHHCCCEEEEecccccccccccccccCCCceEeeC-------------
Confidence 78999999 99998 589999999999999999999999999876531 1111221110
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHH---HhcCC-
Q 018833 72 ICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYM---ENTSP- 147 (350)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~---~~~~p- 147 (350)
..+.... . ....+++.+++.||++|++++++|++++||||||||++.+++.++++.+. ++++|
T Consensus 599 ----------~~G~~~~--~-~~g~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~d~~~~~~~~~~l~~~dP~ 665 (1111)
T TIGR02102 599 ----------ADGTPRT--S-FGGGRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDHDAASIEIAYKEAKAINPN 665 (1111)
T ss_pred ----------CCCCccc--c-cCCCCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccCCHHHHHHHHHHHHHhCcC
Confidence 0011100 0 11346899999999999999999999999999999999999999888874 45677
Q ss_pred CcEEEeecCCCCCCCCCCCCCCCCcchhHHHHHHHhcCCceeEecccchHHHHHhh---------cccc---cccccccC
Q 018833 148 DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV---------QGEL---WRLKDSNG 215 (350)
Q Consensus 148 ~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---------~g~~---~~~~~~~~ 215 (350)
.+++||.|.... +...+... .....++.... ..+.|+..+...++..+ +|.. ..+.....
T Consensus 666 ~~liGE~W~~~~----g~~~~~~~---~~~~~~~~~~~-~ig~FnD~~Rd~irg~~~~~~~~gfi~G~~~~~~~l~~~i~ 737 (1111)
T TIGR02102 666 IIMIGEGWRTYA----GDEGDPVQ---AADQDWMKYTE-TVGVFSDDIRNELKSGFPNEGQPAFITGGARNVQGIFKNIK 737 (1111)
T ss_pred EEEEEecccccC----CCCccccc---ccchhhHhcCC-cccEecHHHHHHHhcccccccccccccCCcccHHHHHHhhc
Confidence 679999997411 00000000 01112322211 24566665555555321 1111 11111111
Q ss_pred -CCCCcccCCCCcccccccCCCCCcCCCCCCC--------C------cchHHHHHHHHHcCCCceeEecCCCCC------
Q 018833 216 -KPPGFIGILPQNAVTFIDNHDTGSTQRLWPF--------P------SDKVMLGYAYILTHPGTPCIFYDHFFD------ 274 (350)
Q Consensus 216 -~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~--------~------~~~~~~a~a~ll~~pG~P~iy~G~~~~------ 274 (350)
.........|.+.|+|+++||+.++...+.. . ..|.+++.+++|+++|+|||++||||+
T Consensus 738 g~~~~~~~~~P~~~VnYV~aHDn~TL~D~l~~~~~~~~~~~e~~~~~~~r~rla~~llllSQGiPfi~aGqEf~RTK~gn 817 (1111)
T TIGR02102 738 AQPHNFEADSPGDVVQYIAAHDNLTLHDVIAQSIKKDPKVAENQEEIHRRIRLGNLMVLTSQGTAFIHSGQEYGRTKQFR 817 (1111)
T ss_pred CCccccccCCcccEEEEEecCCCCchHhhhhhccccCcccccchHHHHHHHHHHHHHHHHhCcHhhhhcchhhhcccCCC
Confidence 1111112367889999999999876322210 1 126789999999999999999998531
Q ss_pred ------------------------------------------------C-------------chHHHHHHHHHHHHhcCc
Q 018833 275 ------------------------------------------------W-------------GLKEAISKLAAVRNRNGI 293 (350)
Q Consensus 275 ------------------------------------------------w-------------~l~~~~~~L~~lR~~~~~ 293 (350)
| +++++++.||+||+++|+
T Consensus 818 nn~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nSY~s~d~iN~lDW~~~~~~~~~~~~~~~~~y~~~LI~lRk~~~~ 897 (1111)
T TIGR02102 818 NPDYRTPVSEDKVPNKSTLMTDVDGNPFRYPYFIHDSYDSSDAINRFDWEKATDADAYPINNKTRDYTAGLIELRRSTDA 897 (1111)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCccceecccccccccccchhHHHHHHHHHHHHHHhcCcc
Confidence 2 258999999999999999
Q ss_pred cCCcce-------EEEecC--------CCEEEEEE----CCEEEEEeCCCCCC-CCcCCC------CcEEEEcC
Q 018833 294 NTASRV-------NILASD--------ADVYIAAI----GDRVIMKIGPKMDI-GNLIPS------DFKVAADG 341 (350)
Q Consensus 294 l~~g~~-------~~~~~~--------~~~~~~~r----~~~~lv~~n~~~~~-~~~~~~------~~~~~~~~ 341 (350)
|+.++. .++... ..+++|.. ++.++|++|.+... ....|. .|++++++
T Consensus 898 fr~~~~~~i~~~v~~~~~~g~~~~~~~~~~ia~~~~~~~~~~~~V~~Na~~~~~~~~lp~~~~~~~~~~v~~~~ 971 (1111)
T TIGR02102 898 FRLGSKALVDRKVTLITIPGQNEIEEEDLVVAYQIVATNGDIYAVFVNADDKARTLTLGEDYAHLTVGEVVVDA 971 (1111)
T ss_pred ccccchhhhcCcEEEECCCCCcccccCCcEEEEEEecCCCCeEEEEECCCCCCEEEECCCCcccccceEEEEcc
Confidence 965543 333322 46788875 46789999986421 111222 57776664
No 24
>PRK14705 glycogen branching enzyme; Provisional
Probab=100.00 E-value=3.4e-36 Score=309.55 Aligned_cols=303 Identities=17% Similarity=0.166 Sum_probs=187.2
Q ss_pred CCcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCCCCCC
Q 018833 2 PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSD 81 (350)
Q Consensus 2 p~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 81 (350)
|.+||+++ ++|||.+|||+||++||++||+||||+|+||++.+... ...|++. + .+. +.+
T Consensus 801 ~~~y~ap~-~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~~----l~~fdg~-~----~y~----------~~d 860 (1224)
T PRK14705 801 VTSYFAPT-SRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSWA----LAQFDGQ-P----LYE----------HAD 860 (1224)
T ss_pred ccccCCcC-cccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcchhh----hhhcCCC-c----ccc----------cCC
Confidence 68999999 99999999999999999999999999999999865310 0012211 0 000 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC------------------------CHHH
Q 018833 82 GQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY------------------------APSI 137 (350)
Q Consensus 82 ~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~------------------------~~~~ 137 (350)
... ..+.+|.. ..+|+.+++|+++|+++++||++++||||||+|++.+| ..+|
T Consensus 861 ~~~--g~~~~Wg~-~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en~~ai~f 937 (1224)
T PRK14705 861 PAL--GEHPDWGT-LIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGRENLEAISF 937 (1224)
T ss_pred ccc--CCCCCCCC-ceecCCCHHHHHHHHHHHHHHHHHhCCCcEEEeehhhhhhcccccccccccccccCCccChHHHHH
Confidence 000 00112222 35999999999999999999999999999999999776 2458
Q ss_pred HHHH---HHhcCC-CcEEEeecCCCCCCCCCCCCCCCCcchhHHHHHHHhcCCceeEecccchHHHHHhh-ccccccccc
Q 018833 138 TKVY---MENTSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV-QGELWRLKD 212 (350)
Q Consensus 138 ~~~~---~~~~~p-~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~g~~~~~~~ 212 (350)
++++ +++..| +++|||....-+-. .........+++..++..+++.....+ .....+...
T Consensus 938 l~~ln~~v~~~~p~~~~IAEest~~p~v---------------t~p~~~GGlGFd~kWnmgwmhd~l~Y~~~dp~~r~~~ 1002 (1224)
T PRK14705 938 LQEVNATVYKTHPGAVMIAEESTAFPGV---------------TAPTSHGGLGFGLKWNMGWMHDSLKYASEDPINRKWH 1002 (1224)
T ss_pred HHHHHHHHHHHCCCeEEEEEcCCCCcCc---------------cccccCCCccCCcEecchhhHHHHHHhhhCcchhhcc
Confidence 8887 444567 78999987632100 000000111222223323333221211 122211111
Q ss_pred ccCCCCCcccCCCCcccccccCCCCCc-C-CC---CCCC----CcchHHHHHHHHHcCCCceeEecCCCCC---------
Q 018833 213 SNGKPPGFIGILPQNAVTFIDNHDTGS-T-QR---LWPF----PSDKVMLGYAYILTHPGTPCIFYDHFFD--------- 274 (350)
Q Consensus 213 ~~~~~~~~~~~~~~~~v~f~~nHD~~r-~-~~---~~~~----~~~~~~~a~a~ll~~pG~P~iy~G~~~~--------- 274 (350)
......++......+ +.+..|||+-. . .+ ...+ ..+.++.+++++++.||+|+||||+|++
T Consensus 1003 ~~~ltf~~~ya~~e~-fvl~~SHDevvhgk~sl~~km~Gd~~~k~a~lR~~~a~~~~~PGk~LlFMG~Efgq~~ew~~~~ 1081 (1224)
T PRK14705 1003 HGTITFSLVYAFTEN-FLLPISHDEVVHGKGSMLRKMPGDRWQQLANLRAFLAYQWAHPGKQLIFMGTEFGQEAEWSEQH 1081 (1224)
T ss_pred cchHHHHHHHHhhcC-EecccccccccccchhHHHhCCCcHHHHHHHHHHHHHHHHhcCCcCEEECccccCCCCCccccc
Confidence 000000000001111 23456899742 1 11 1111 1235788999999999999999999765
Q ss_pred ---C---------chHHHHHHHHHHHHhcCccCC-----cceEEEe---cCCCEEEEEE----CCEEEEEeCCCCC----
Q 018833 275 ---W---------GLKEAISKLAAVRNRNGINTA-----SRVNILA---SDADVYIAAI----GDRVIMKIGPKMD---- 326 (350)
Q Consensus 275 ---w---------~l~~~~~~L~~lR~~~~~l~~-----g~~~~~~---~~~~~~~~~r----~~~~lv~~n~~~~---- 326 (350)
| .+..+++.|++||+++|+|.. ..++++. .+++|++|.| ++.++|++|.+..
T Consensus 1082 ~LdW~ll~~~~h~~~~~~~rdLn~ly~~~paL~~~d~~~~gf~wi~~~d~~~~vlaf~R~~~~~~~vlvv~Nftp~~~~~ 1161 (1224)
T PRK14705 1082 GLDWFLADIPAHRGIQLLTKDLNELYTSTPALYQRDNEPGGFQWINGGDADRNVLSFIRWDGDGNPLVCAINFSGGPHKG 1161 (1224)
T ss_pred cCCCcccCChhhHHHHHHHHHHHHHHhcChhhhccCCCCCceEEeecCCCCCcEEEEEEeCCCCCEEEEEEcCCCCCccC
Confidence 4 267799999999999999953 3466764 3357999998 2468899998642
Q ss_pred --CCCcCCCCcEEEEcCCc
Q 018833 327 --IGNLIPSDFKVAADGTD 343 (350)
Q Consensus 327 --~~~~~~~~~~~~~~~~~ 343 (350)
+|-...+.|+.++|++.
T Consensus 1162 y~igvp~~G~y~eilnsd~ 1180 (1224)
T PRK14705 1162 YTLGVPAAGAWTEVLNTDH 1180 (1224)
T ss_pred ceECCCCCCeEEEEEeCch
Confidence 23333468888887654
No 25
>PLN02960 alpha-amylase
Probab=100.00 E-value=4.7e-35 Score=288.65 Aligned_cols=302 Identities=14% Similarity=0.165 Sum_probs=181.8
Q ss_pred CCcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCCCCCC
Q 018833 2 PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSD 81 (350)
Q Consensus 2 p~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 81 (350)
|.+|++++ ++|||.++||+||++||++||+||||+|+||++.++...- ..|++ ++ ..++ ..
T Consensus 452 ~~~yfa~~-~~yGtp~dfk~LVd~aH~~GI~VILDvV~NH~~~d~~~~L---~~FDG-~~---~~Yf-----------~~ 512 (897)
T PLN02960 452 VTNFFAVS-SRFGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGL---SLFDG-SN---DCYF-----------HS 512 (897)
T ss_pred cccCCCcc-cccCCHHHHHHHHHHHHHCCCEEEEEecccccCCccccch---hhcCC-Cc---ccee-----------ec
Confidence 58999999 9999999999999999999999999999999998752110 11221 00 0011 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC-------------------------HH
Q 018833 82 GQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA-------------------------PS 136 (350)
Q Consensus 82 ~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~-------------------------~~ 136 (350)
+...+. ..| +...+|+.+++|+++|++++++|++++||||||+|++..|- ..
T Consensus 513 ~~~g~~--~~W-G~~~fNy~~~eVr~fLlsna~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n~~~d~~Ai~ 589 (897)
T PLN02960 513 GKRGHH--KRW-GTRMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYCNQYVDRDALI 589 (897)
T ss_pred CCCCcc--CCC-CCcccCCCCHHHHHHHHHHHHHHHHHHCCCceeecccceeeeeccCccccCCcccccCCccCCchHHH
Confidence 000000 112 23568999999999999999999999999999999996631 12
Q ss_pred HHHHH---HHhcCC-CcEEEeecCCCCCCCCCCCCCCCCcchhHHHHHHHhcCCceeEecccchHHHHHhhcccccc---
Q 018833 137 ITKVY---MENTSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWR--- 209 (350)
Q Consensus 137 ~~~~~---~~~~~p-~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~--- 209 (350)
|++.+ ++...| +++|||....-+-. +..-.....+++-..++.....+..++.....+
T Consensus 590 fL~~lN~~v~~~~P~vilIAEdss~~P~v---------------t~P~~~GGLGFDYkwnmG~~~d~l~~l~~~~~r~~~ 654 (897)
T PLN02960 590 YLILANEMLHQLHPNIITIAEDATFYPGL---------------CEPTSQGGLGFDYYVNLSPSEMWLSLLENVPDQEWS 654 (897)
T ss_pred HHHHHHHHHHhhCCCeEEEEECCCCCCCc---------------cccCCCCCCCcccccCCCcHHHHHHHHHhCcCCCCC
Confidence 44444 444456 78999987532110 000000011122222333333333333111100
Q ss_pred cccccCCCCCcccCCCCcccccccCCCC-----CcCCCCCCCC-------cc----------hHHHHHHHHHcCCCceeE
Q 018833 210 LKDSNGKPPGFIGILPQNAVTFIDNHDT-----GSTQRLWPFP-------SD----------KVMLGYAYILTHPGTPCI 267 (350)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~v~f~~nHD~-----~r~~~~~~~~-------~~----------~~~~a~a~ll~~pG~P~i 267 (350)
.......+.. ....+.+.+.|++|||+ .++...+... .. .+..+++++++ ||+||+
T Consensus 655 ~~~l~~s~~~-~~~~~~~~v~Y~EnHDQVv~Gkrsl~~rL~g~~~~k~~~~~~~~lRa~al~~~~rllt~~~~-Pg~pLl 732 (897)
T PLN02960 655 MSKIVSTLVK-NKENADKMLSYAENHNQSISGGKSFAEILLGKNKESSPAVKELLLRGVSLHKMIRLITFTLG-GSAYLN 732 (897)
T ss_pred hhccEeeecc-CcCCcceEEEEecCcCccccCcccHHHHCCCchhhhhcccChhhhhhhhHHHHHHHHHHHhC-CCCCEe
Confidence 0000000000 01234567899999999 1111111111 01 11123455554 899999
Q ss_pred ecCCCCC----------------------C---------chHHHHHHHHHHHHhcCccCCcceEEEe--cCCCEEEEEEC
Q 018833 268 FYDHFFD----------------------W---------GLKEAISKLAAVRNRNGINTASRVNILA--SDADVYIAAIG 314 (350)
Q Consensus 268 y~G~~~~----------------------w---------~l~~~~~~L~~lR~~~~~l~~g~~~~~~--~~~~~~~~~r~ 314 (350)
|||+|++ | .+.+++|.|++||+++|+|..|...... .++.|++|.|+
T Consensus 733 FMG~EFGh~e~~~~PdP~n~~tf~~s~LdW~Ll~~~~h~~l~~f~rdL~~Lr~~~paL~~g~~~i~~~d~~~~Viaf~R~ 812 (897)
T PLN02960 733 FMGNEFGHPERVEFPRASNNFSFSLANRRWDLLEDGVHAHLFSFDKALMALDEKYLILSRGLPNIHHVNDTSMVISFTRG 812 (897)
T ss_pred eCccccCChhhhhCcCCCCccccccccCCcccccChhHHHHHHHHHHHHHHHhcChhhcCCcceeeeecCCCCEEEEEeC
Confidence 9998643 4 2778999999999999999877655543 34579999995
Q ss_pred CEEEEEeCCCCC-------CCCcCCCCcEEEEcCCc
Q 018833 315 DRVIMKIGPKMD-------IGNLIPSDFKVAADGTD 343 (350)
Q Consensus 315 ~~~lv~~n~~~~-------~~~~~~~~~~~~~~~~~ 343 (350)
.+|+|+|.+.. ++-..++.|+.+++++.
T Consensus 813 -~llvV~NFsp~~~~~~Y~vgvP~~G~y~eilNSD~ 847 (897)
T PLN02960 813 -PLLFAFNFHPTNSYEEYEVGVEEAGEYELILNTDE 847 (897)
T ss_pred -CeEEEEeCCCCCcCcCceECCCCCCcEEEEEeCch
Confidence 68899998742 11122357888887643
No 26
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=100.00 E-value=2.1e-34 Score=274.42 Aligned_cols=300 Identities=16% Similarity=0.175 Sum_probs=215.7
Q ss_pred CcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCC--------CCcccce-----------eecCCCCC-
Q 018833 3 GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERK--------DGRGIYC-----------IFEGGTSD- 62 (350)
Q Consensus 3 ~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~--------~~~~~~~-----------~~~~~~~~- 62 (350)
.| ++|| |+|||++||++||++||++||+||+|+|+||||..|+ .+.+.|| .|.+..+.
T Consensus 118 ~d-~~Id-p~~GT~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~ghdF~lAr~~~~~Y~g~Y~mvei~~~~W~vwpd~~~~~ 195 (688)
T TIGR02455 118 IS-FDID-PLLGSEEELIQLSRMAAAHNAITIDDIIPAHTGKGADFRLAELAHGDYPGLYHMVEIREEDWALLPEVPAGR 195 (688)
T ss_pred cc-CccC-cccCCHHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcchHHHhhcCCCCCCceeeccccccccccCCCCCccc
Confidence 46 5999 9999999999999999999999999999999999986 2334444 55442111
Q ss_pred --------------------C---CCCCCCCccccCCCCCC--------CCCCCCCCCCCCCCCCCCCCCCHH--HHHHH
Q 018833 63 --------------------D---RLDWGPSFICRGDKEYS--------DGQGNDDTGEDFQPAPDIDHLNPR--VQKEL 109 (350)
Q Consensus 63 --------------------~---~~~w~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~dln~~n~~--v~~~l 109 (350)
. +.-|+........|.|. .....++.+.++..+|+|||.||. |++.|
T Consensus 196 ~~~~l~~~~~~~L~~~g~i~~~l~rviF~~pg~e~s~Wt~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~ 275 (688)
T TIGR02455 196 DAVNLLPAQCDELKAKHYIVGQLQRVIFFEPGIKDTDWSATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLI 275 (688)
T ss_pred ccccccHHHHHHHhhccCcccccccceecCCCcccCCceecccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHH
Confidence 0 01111111122334444 344577788999999999999999 99999
Q ss_pred H-HHHHHHHHhcCCCeEEecccCCC-------------CHHHHHHH---HH--hcCC-CcEEEeecCCCCCCCCCCCCCC
Q 018833 110 S-DWMNWLKTEIGFDGWRFDFVKGY-------------APSITKVY---ME--NTSP-DFAVGEKWDSLSYGPDGKPDAN 169 (350)
Q Consensus 110 ~-~~~~~w~~~~gvDGfR~D~a~~~-------------~~~~~~~~---~~--~~~p-~~~~~E~~~~~~~~~~~~~~~~ 169 (350)
+ +++.+|.+ +|+||||+|++.++ ++++.+.. +. ..++ .++++|.-..
T Consensus 276 ~gdal~~w~~-lG~~GfRLDAvpfLg~e~~~~~~~~~e~h~ll~~~r~~l~~~~r~~Gg~ll~E~nl~------------ 342 (688)
T TIGR02455 276 IGDALHAIDC-LGARGLRLDANGFLGVERRAEGTAWSEGHPLSLTGNQLIAGAIRKAGGFSFQELNLT------------ 342 (688)
T ss_pred HHHHHHHHHH-hccccceeccccceeeecCCCCCCCCccCHHHHHHHHHHHHhhhcCCeeEeeeccCC------------
Confidence 9 89999998 99999999998776 23454444 33 2245 7899998643
Q ss_pred CCcchhHHHHHHHhcCCceeEecccchHHHHHhh-cccccccccccCCCCCcccCCCCcccccccCCCCCcCC-------
Q 018833 170 QDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV-QGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQ------- 241 (350)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~------- 241 (350)
...+..|+. ++.++.|||..+..+..++ .|+..-+......... .+-.+.+++.|+.|||+-...
T Consensus 343 ----~~d~~~~~g--~~~dl~~dF~t~p~~~~AL~tgda~pLr~~L~~~~~-~gid~~~~~~~LrNHDELtlelvh~~~~ 415 (688)
T TIGR02455 343 ----IDDIAAMSH--GGADLSYDFITRPAYHHALLTGDTEFLRLMLKEMHA-FGIDPASLIHALQNHDELTLELVHFWTL 415 (688)
T ss_pred ----HHHHHHHhC--CCcceeecccccHHHHHHHHcCCHHHHHHHHHhhhc-CCCCchhhhhhccCccccchhhhhhccc
Confidence 677888887 3789999999988887776 5654333322211111 111346778999999991000
Q ss_pred ----------------------------------------------------------------CCCCCCcchHHHHHHH
Q 018833 242 ----------------------------------------------------------------RLWPFPSDKVMLGYAY 257 (350)
Q Consensus 242 ----------------------------------------------------------------~~~~~~~~~~~~a~a~ 257 (350)
.....+.++++++.++
T Consensus 416 ~~~~~~~~~g~~~~g~~l~e~~R~~m~~~~a~d~~p~~m~~~~~gi~~t~a~~ia~~~GIRrLap~~~~d~~~I~~~h~L 495 (688)
T TIGR02455 416 HAHDHYHYKGQTLPGGHLREHIREEIYERLSGEHAPYNLKFVTNGIACTTASLIAAALGIRDLDAIGPADIELIKKLHIL 495 (688)
T ss_pred ccccccccccccCCccccCHHHHHHHHHHhcCCCccccceEEeccccccchhhhhhhcCCccchhhCCCCHHHHHHHHHH
Confidence 0111233468899999
Q ss_pred HHc----CCCceeEecC--------------CCCC-----C---------------------------------------
Q 018833 258 ILT----HPGTPCIFYD--------------HFFD-----W--------------------------------------- 275 (350)
Q Consensus 258 ll~----~pG~P~iy~G--------------~~~~-----w--------------------------------------- 275 (350)
|++ +||+|+|||| +|++ |
T Consensus 496 L~s~na~lPG~p~L~ygdl~GalpL~~~~v~deigmGD~~wl~rggfs~~~~~p~~~~s~~~lP~~~~~Ygnv~~Ql~dp 575 (688)
T TIGR02455 496 LVMFNAMQPGVFALSGWDLVGALPLAAEAVAELMGDGDTRWIHRGGYDLADLAPEAEASAEGLPKARALYGSLAEQLDEP 575 (688)
T ss_pred HHHhhccCCCceEeecccccccccccccchhhhhccCccccccCCCcccCCCCchhhhccCCCCCCcCCCCCHHHHhhCC
Confidence 999 9999999999 4332 2
Q ss_pred -chHHHHHHHHHHHHhcCccCCcceEEEecC-CCEEEEEE---C--CEEEEEeCCC
Q 018833 276 -GLKEAISKLAAVRNRNGINTASRVNILASD-ADVYIAAI---G--DRVIMKIGPK 324 (350)
Q Consensus 276 -~l~~~~~~L~~lR~~~~~l~~g~~~~~~~~-~~~~~~~r---~--~~~lv~~n~~ 324 (350)
++...+++|++.|++++++..|.+..+.++ +.++++.+ + +..|++.|.+
T Consensus 576 ~S~l~~l~~il~vR~~~~i~~~~~~~~~~~~~~gvLa~v~~l~~~~~~~L~v~Nfs 631 (688)
T TIGR02455 576 DSFACKLKKILAVRQAYDIAASKQILIPDVQAPGLLVMVHELPAGKGIQITALNFG 631 (688)
T ss_pred ccHHHHHHHHHHHHHhCCcccCceeeecCCCCCcEEEEEEEcCCCCceEEEeeccC
Confidence 488999999999999999999999988765 58999876 3 5677777775
No 27
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=100.00 E-value=6e-34 Score=280.91 Aligned_cols=301 Identities=18% Similarity=0.253 Sum_probs=186.8
Q ss_pred CCcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCCCCCC
Q 018833 2 PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSD 81 (350)
Q Consensus 2 p~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 81 (350)
|.||++++ ++|||.++||+||++||++||+||||+|+||++.++... ...|++ +. ..|+. .
T Consensus 286 ~~~~fa~~-~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~~~~~g---l~~fDg-~~---~~Yf~-----------~ 346 (758)
T PLN02447 286 VTNFFAVS-SRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASKNTLDG---LNGFDG-TD---GSYFH-----------S 346 (758)
T ss_pred cccCcccc-cccCCHHHHHHHHHHHHHCCCEEEEEecccccccccccc---ccccCC-CC---ccccc-----------c
Confidence 67999999 999999999999999999999999999999999765211 111221 00 11111 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC--------------------------H
Q 018833 82 GQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA--------------------------P 135 (350)
Q Consensus 82 ~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~--------------------------~ 135 (350)
....+ ...+ +...+|+.+++|+++|++++++|++++||||||+|+|++|- .
T Consensus 347 ~~~g~--~~~w-~~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~~~~g~~~d~~a~ 423 (758)
T PLN02447 347 GPRGY--HWLW-DSRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFGMATDVDAV 423 (758)
T ss_pred CCCCC--cCcC-CCceecCCCHHHHHHHHHHHHHHHHHhCcccccccchhhhhccccCcccccccCcccccCCccChHHH
Confidence 00000 0111 22359999999999999999999999999999999998772 1
Q ss_pred HHHHHH---HHhcCC-CcEEEeecCCCCCCCCCCCCCCCCcchhHHHHHHHhcCCceeEecccchHHHHHhhccc---cc
Q 018833 136 SITKVY---MENTSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE---LW 208 (350)
Q Consensus 136 ~~~~~~---~~~~~p-~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~---~~ 208 (350)
.+++.+ +++..| +++|||.....+-. ........-+++.-++..........+... .+
T Consensus 424 ~fL~~~N~~i~~~~p~~~~IAEd~s~~p~l---------------~~p~~~GGlGFDykw~Mg~~~~~l~~l~~~~d~~~ 488 (758)
T PLN02447 424 VYLMLANDLLHGLYPEAVTIAEDVSGMPTL---------------CRPVQEGGVGFDYRLAMAIPDKWIELLKEKRDEDW 488 (758)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCCCc---------------cccCCCCcCCcceEECCccchHHHHHHhhCCCccc
Confidence 134444 455677 78999987542210 000000011122222222233322232211 11
Q ss_pred ccccccCCCCCccc-CCCCcccccccCCCCCcCC--CC----C------CCCc--------ch----HHHHHHHHHcCCC
Q 018833 209 RLKDSNGKPPGFIG-ILPQNAVTFIDNHDTGSTQ--RL----W------PFPS--------DK----VMLGYAYILTHPG 263 (350)
Q Consensus 209 ~~~~~~~~~~~~~~-~~~~~~v~f~~nHD~~r~~--~~----~------~~~~--------~~----~~~a~a~ll~~pG 263 (350)
.+.... .++.. ....+.|.|.+|||+.... ++ . .+.. .| .|+..++++++||
T Consensus 489 ~~~~l~---~sl~~r~~~E~~I~y~eSHDevv~Gkksl~~~l~d~~my~~m~~~~~~~~~~~R~~~lhkmirl~~~~~pG 565 (758)
T PLN02447 489 SMGDIV---HTLTNRRYTEKCVAYAESHDQALVGDKTIAFWLMDKEMYDGMSTLTPATPVVDRGIALHKMIRLITMALGG 565 (758)
T ss_pred CHHHHH---HHHhcccccCceEeccCCcCeeecCcchhHhhhcchhhhhcCCCChhhhhhHHHHHHHHHHHHHHHHhCCC
Confidence 111110 01111 1335668899999995431 10 1 0110 11 1345578999999
Q ss_pred c-eeEecCCCCC----------------------Cc-----------hHHHHHHHHHHHHhcCccCCcceEEE--ecCCC
Q 018833 264 T-PCIFYDHFFD----------------------WG-----------LKEAISKLAAVRNRNGINTASRVNIL--ASDAD 307 (350)
Q Consensus 264 ~-P~iy~G~~~~----------------------w~-----------l~~~~~~L~~lR~~~~~l~~g~~~~~--~~~~~ 307 (350)
. +++|||.|++ |+ +.++.+.|++|++++++|..|...+. ..++.
T Consensus 566 ~g~L~FMGnEFg~~ew~Dfpr~~n~ws~~~~~~~W~L~d~~~l~~~~l~~f~~~L~~l~~~~~~L~~~~~~i~~~d~~~~ 645 (758)
T PLN02447 566 EGYLNFMGNEFGHPEWIDFPREGNGWSYDKCRRRWDLADADHLRYKFLNAFDRAMMHLDEKYGFLTSEHQYVSRKDEGDK 645 (758)
T ss_pred CcceeecccccCCchhccCcccccccCcccccCCccccCCCchhhhHHHHHHHHHHHHHhcCccccCCCceeeeecCCCC
Confidence 9 7999998654 32 56799999999999999986643332 24468
Q ss_pred EEEEEECCEEEEEeCCCCC-------CCCcCCCCcEEEEcCCc
Q 018833 308 VYIAAIGDRVIMKIGPKMD-------IGNLIPSDFKVAADGTD 343 (350)
Q Consensus 308 ~~~~~r~~~~lv~~n~~~~-------~~~~~~~~~~~~~~~~~ 343 (350)
|++|.|++ +|+|+|.+.. +|-..++.|++++|++.
T Consensus 646 Viaf~R~~-ll~V~NF~p~~s~~~Y~igvp~~G~y~~ilnSD~ 687 (758)
T PLN02447 646 VIVFERGD-LVFVFNFHPTNSYSDYRVGCDKPGKYKIVLDSDA 687 (758)
T ss_pred EEEEEeCC-eEEEEeCCCCCCCCCcEECCCCCCeEEEEECCCc
Confidence 99999974 8899998642 33334568888888753
No 28
>PLN03244 alpha-amylase; Provisional
Probab=100.00 E-value=7e-33 Score=268.53 Aligned_cols=299 Identities=16% Similarity=0.223 Sum_probs=180.2
Q ss_pred CCcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCCCCCC
Q 018833 2 PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSD 81 (350)
Q Consensus 2 p~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 81 (350)
.++||+++ ++|||.+|||+||++||++||+||||+|+||++.+....- ..|++ ++. .|+ ..
T Consensus 427 vt~fFAps-sRYGTPeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL---~~fDG-t~~---~Yf-----------~~ 487 (872)
T PLN03244 427 VTNFFAAS-SRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGL---SLFDG-SND---CYF-----------HT 487 (872)
T ss_pred cCcccccC-cccCCHHHHHHHHHHHHHCCCEEEEEecCccCCCccccch---hhcCC-Ccc---cee-----------cc
Confidence 46899999 9999999999999999999999999999999997642110 01111 110 111 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC-------------------------HH
Q 018833 82 GQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA-------------------------PS 136 (350)
Q Consensus 82 ~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~-------------------------~~ 136 (350)
+...+. ..| +...+|+.+++|+++|+++++||++++||||||+|++..|- ..
T Consensus 488 ~~~g~~--~~W-Gs~~fnyg~~EVr~FLLsna~yWleEyhIDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~~~d~dAv~ 564 (872)
T PLN03244 488 GKRGHH--KHW-GTRMFKYGDLDVLHFLISNLNWWITEYQIDGFQFHSLASMIYTHNGFASFNGDLDDYCNQYVDKDALM 564 (872)
T ss_pred CCCCcc--CCC-CCceecCCCHHHHHHHHHHHHHHHHHhCcCcceeecchhheeeccccccccCCccccccccCCchHHH
Confidence 000000 111 22458999999999999999999999999999999983331 11
Q ss_pred HHHH---HHHhcCC-CcEEEeecCCCCCCCCCCCCCCCCcchhHHHHHHHhcCCceeEecccch----HHHHHhh-cccc
Q 018833 137 ITKV---YMENTSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTK----GILQAAV-QGEL 207 (350)
Q Consensus 137 ~~~~---~~~~~~p-~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~-~g~~ 207 (350)
+++. ++.+..| +++|||....-+-.. .-.. .+ ...||+.+. ......+ ....
T Consensus 565 fL~laN~~ih~~~P~~itIAEDsS~~P~vt----------------~Pv~-~G--GLGFDYKWnMgwmdd~lkylk~~pd 625 (872)
T PLN03244 565 YLILANEILHALHPKIITIAEDATYYPGLC----------------EPTS-QG--GLGFDYYVNLSAPDMWLDFLDNIPD 625 (872)
T ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCCcCcc----------------ccCC-CC--CCCccceecCcchHHHHHHHHhCCC
Confidence 2333 3556678 679999875321100 0000 01 112333322 1111121 1111
Q ss_pred --cccccccCCCCCcccCCCCcccccccCCCCCcCC----CC-C-------CC--------CcchHHHHHHHHHcCCCce
Q 018833 208 --WRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQ----RL-W-------PF--------PSDKVMLGYAYILTHPGTP 265 (350)
Q Consensus 208 --~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~----~~-~-------~~--------~~~~~~~a~a~ll~~pG~P 265 (350)
+.+........ .........+.|.||||..-.. .. + .. ..+-.|++-++++++||.|
T Consensus 626 erw~~~~ItfsL~-~nrr~~ek~~aYsESHDqaLvGdKTlaf~l~d~~~y~~~~~~~vv~Rg~aLhKMiRllt~~~~G~k 704 (872)
T PLN03244 626 HEWSMSKIVSTLI-ANKEYADKMLSYAENHNQSISGGRSFAEILFGAIDEDPLGGKELLDRGCSLHKMIRLITFTIGGHA 704 (872)
T ss_pred cccCHHHHhhhhh-cccCCcceEEEEecccceeccccchHHhhhcccccccccccchhhhhhhHHHHHHHHHHHHccCcc
Confidence 11111100000 0001123568899999993221 00 0 00 0011244456788899987
Q ss_pred -eEecCCCCC----------------------Cc---------hHHHHHHHHHHHHhcCccCCcceEEE--ecCCCEEEE
Q 018833 266 -CIFYDHFFD----------------------WG---------LKEAISKLAAVRNRNGINTASRVNIL--ASDADVYIA 311 (350)
Q Consensus 266 -~iy~G~~~~----------------------w~---------l~~~~~~L~~lR~~~~~l~~g~~~~~--~~~~~~~~~ 311 (350)
++|||+|++ |+ +..+++.|++|++++++|..|...+. ..++.|+||
T Consensus 705 kLnFMGNEFGhpe~~dfPr~gN~~s~~~arrdW~Lld~~~hk~L~~FdrdLn~Ly~~~~aL~~gf~wI~~~d~e~kVIAF 784 (872)
T PLN03244 705 YLNFMGNEFGHPERIEFPMPSNNFSFSLANRCWDLLENEVHHHLFSFDKDLMDLDENEGILSRGLPNIHHVKDAAMVISF 784 (872)
T ss_pred ceeecccccCCchheeccccCCCccccccccCccccCChhHHHHHHHHHHHHHHHhcCcccccCCcEEeeecCCCCEEEE
Confidence 799998654 32 67799999999999999977654333 344689999
Q ss_pred EECCEEEEEeCCCCC-------CCCcCCCCcEEEEcCCc
Q 018833 312 AIGDRVIMKIGPKMD-------IGNLIPSDFKVAADGTD 343 (350)
Q Consensus 312 ~r~~~~lv~~n~~~~-------~~~~~~~~~~~~~~~~~ 343 (350)
.|+ .+|+|+|.+.. +|-..++.|++++|++.
T Consensus 785 ~R~-~LLfVfNF~P~~sy~dYrIGVp~~G~Y~eILNSD~ 822 (872)
T PLN03244 785 MRG-PFLFIFNFHPSNSYEGYDVGVEEAGEYQIILNSDE 822 (872)
T ss_pred Eec-CEEEEEeCCCCCCccCCEECCCCCCeEEEEEeCCh
Confidence 997 58889998642 23334568888887654
No 29
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=100.00 E-value=4e-33 Score=280.32 Aligned_cols=136 Identities=18% Similarity=0.331 Sum_probs=99.9
Q ss_pred CCcccCCCCCCCCC-------HHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCCCcccceeecCCCCCCCCCCCCCcccc
Q 018833 2 PGRLYDLDASKYGS-------QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICR 74 (350)
Q Consensus 2 p~d~~~id~~~~Gt-------~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 74 (350)
|..|+.+. ..|+| ..|||+||++||++||+||||+|+|||+..++..... ++.-. ..|+.+.
T Consensus 383 P~~y~aPe-gSYatdp~g~~Ri~Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~---ld~~~----P~YY~r~--- 451 (898)
T TIGR02103 383 PFHYTVPE-GSYATDPEGPARIKEFREMVQALNKTGLNVVMDVVYNHTNASGPNDRSV---LDKIV----PGYYHRL--- 451 (898)
T ss_pred CcccCCcC-hhhccCCCCchHHHHHHHHHHHHHHCCCEEEEEeecccccccCccCccc---ccccC----cHhhEee---
Confidence 67777777 77777 4799999999999999999999999999876422110 11000 0011000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHH---HHhcCC-CcE
Q 018833 75 GDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVY---MENTSP-DFA 150 (350)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~---~~~~~p-~~~ 150 (350)
+..+.. .......+++.+|+.|+++|++++++|++++||||||||++++++.++|+++ +++++| +++
T Consensus 452 ------~~~G~~---~n~~~~~d~a~e~~~Vrk~iiDsl~~W~~ey~VDGFRfDlm~~~~~~f~~~~~~~l~~i~pdi~l 522 (898)
T TIGR02103 452 ------NEDGGV---ENSTCCSNTATEHRMMAKLIVDSLVVWAKDYKVDGFRFDLMGHHPKAQMLAAREAIKALTPEIYF 522 (898)
T ss_pred ------CCCCCe---ecCCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEEechhhCCHHHHHHHHHHHHHhCCCEEE
Confidence 000111 1112335689999999999999999999999999999999999999999999 556677 679
Q ss_pred EEeecCC
Q 018833 151 VGEKWDS 157 (350)
Q Consensus 151 ~~E~~~~ 157 (350)
+||.|..
T Consensus 523 ~GEgW~~ 529 (898)
T TIGR02103 523 YGEGWDF 529 (898)
T ss_pred EecCCCc
Confidence 9999974
No 30
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=99.97 E-value=8.7e-31 Score=256.98 Aligned_cols=311 Identities=21% Similarity=0.290 Sum_probs=188.4
Q ss_pred CCcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCC----------Cc-ccceeecCCCC--CCCCCCC
Q 018833 2 PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD----------GR-GIYCIFEGGTS--DDRLDWG 68 (350)
Q Consensus 2 p~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~----------~~-~~~~~~~~~~~--~~~~~w~ 68 (350)
+.||++|| |.|||++||++||++||++||+||+|+|+||+|.+|++ .. .+|+.|..... ..+.+|.
T Consensus 63 ~~Dy~~id-~~~Gt~~d~~~li~~~H~~gi~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~ 141 (505)
T COG0366 63 VSDYTKVD-PHFGTEEDFKELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPDPDGTPPNNWF 141 (505)
T ss_pred ccchhhcC-cccCCHHHHHHHHHHHHHCCCEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCcccCCCCCcch
Confidence 57999999 99999999999999999999999999999999999962 12 26776654221 1233443
Q ss_pred CCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCH-----------HH
Q 018833 69 PSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP-----------SI 137 (350)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~-----------~~ 137 (350)
..+. ...+.+ ...+.+..+.+...+|+||+.||+|++++.+++++|++ +||||||+|++++++. .+
T Consensus 142 ~~~~-~~~~~~-~~~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~~~W~~-~gvDGfRlDa~~~~~~~~~~~~~~~~~~~ 218 (505)
T COG0366 142 SVFG-GDAWTW-GNTGEYYLHLFSSEQPDLNWENPEVREELLDVVKFWLD-KGVDGFRLDAAKHISKDFGLPPSEENLTF 218 (505)
T ss_pred hhcC-CCCCCc-CCCCceEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHH-cCCCeEEeccHhhhccccCCCCccccccc
Confidence 2222 222222 33456777788899999999999999999999999999 9999999999999987 55
Q ss_pred HHHHHH---hcCC-CcEEEeecCCCC-CCCCCCCCCCCCcchhHHHHHHHhcCCceeEecccchHHHHHhh-cccccccc
Q 018833 138 TKVYME---NTSP-DFAVGEKWDSLS-YGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV-QGELWRLK 211 (350)
Q Consensus 138 ~~~~~~---~~~p-~~~~~E~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~g~~~~~~ 211 (350)
+..+.+ +..+ ++..+|.+.... ..+ ....+. ... .........+.+++.....-.... ......+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (505)
T COG0366 219 LEEIHEYLREENPDVLIYGEAITDVGEAPG-AVKEDF----ADN---TSFTNPELSMLFDFSHVGLDFEALAPLDAEELK 290 (505)
T ss_pred HHHHHHHHHHHHHHHHhcCcceeeeecccc-ccchhh----hhc---cchhhhhHhhccccccccccccccCcccHHHHH
Confidence 555532 2222 222223222110 000 000000 000 000001122233332221100000 00000000
Q ss_pred cccCCCCCcccCCCCcccccccCCCCCcCCCCCCCCc----chHHHHHHHHHcCCCceeEecCCCC--------------
Q 018833 212 DSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPS----DKVMLGYAYILTHPGTPCIFYDHFF-------------- 273 (350)
Q Consensus 212 ~~~~~~~~~~~~~~~~~v~f~~nHD~~r~~~~~~~~~----~~~~~a~a~ll~~pG~P~iy~G~~~-------------- 273 (350)
...................|..|||++|..+...... ..++.+.++++++||+|+||||+|.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~hD~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~iy~G~e~g~~~~~~~~~~~~~ 370 (505)
T COG0366 291 EILADWPLAVNLNDGWNNLFLSNHDQPRLLSRFGDDVGGRDASAKLLAALLFLLPGTPFIYYGDELGLTNFKDPPIKYYD 370 (505)
T ss_pred HHHHHHHhhhccccCchhhhhhhcCccceeeeccCCccchHHHHHHHHHHHHhCCCCcEEecccccCCCCCCCcchhhhc
Confidence 0000000000000112234799999999888775444 5678888889999999999999732
Q ss_pred -------------------CC--------------------------------------chHHHHHHHHHHHHhc-CccC
Q 018833 274 -------------------DW--------------------------------------GLKEAISKLAAVRNRN-GINT 295 (350)
Q Consensus 274 -------------------~w--------------------------------------~l~~~~~~L~~lR~~~-~~l~ 295 (350)
.| +++.++++|+++|+.+ +.+.
T Consensus 371 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~~~~~~l~~~r~~~~~~~~ 450 (505)
T COG0366 371 DVELDSIILLSRDGCRTPMPWDENGLNAGFTGGKPWLSVNPNDLLGINVEAQLADELPESLFNFYRRLIALRKQHSALLA 450 (505)
T ss_pred hhhhhhhhhccccCCCCCcCCCCCCCCCCccCCCcCcccChhhhhhhhHHHHhcccCcccHHHHHHHHHHHHHhhhhhhc
Confidence 12 2678899999999999 4556
Q ss_pred Ccce-EEEe-cCCCEEEEEE---CCEEEEEeCCC
Q 018833 296 ASRV-NILA-SDADVYIAAI---GDRVIMKIGPK 324 (350)
Q Consensus 296 ~g~~-~~~~-~~~~~~~~~r---~~~~lv~~n~~ 324 (350)
.|.. .... .+..+++|.| ++.++|++|.+
T Consensus 451 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 484 (505)
T COG0366 451 NGEDFVLLADDDPSLLAFLRESGGETLLVVNNLS 484 (505)
T ss_pred CcccceecCCCCceEEEEecccCCceEEEEEcCC
Confidence 6743 3333 3347899998 33467777765
No 31
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=4.1e-30 Score=250.30 Aligned_cols=317 Identities=27% Similarity=0.376 Sum_probs=213.2
Q ss_pred CCcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCC------C---cccceeecCCC------CCCCCC
Q 018833 2 PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD------G---RGIYCIFEGGT------SDDRLD 66 (350)
Q Consensus 2 p~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~------~---~~~~~~~~~~~------~~~~~~ 66 (350)
+.||++|+ |+|||+|||++||+++|++||++|+|+|+||++.+|++ . ..+|+.|.++. ..++.+
T Consensus 74 ~~d~~~l~-p~fGt~edf~~Li~~~h~~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~n 152 (545)
T KOG0471|consen 74 ASDLEQLR-PRFGTEEDFKELILAMHKLGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLN 152 (545)
T ss_pred ccchhhhc-ccccHHHHHHHHHHHHhhcceEEEEeeccccCCccccccccCccccccceeeeeccCcccccccCCCCccc
Confidence 78999999 99999999999999999999999999999999987763 1 22355555432 334677
Q ss_pred CCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHHHhcCCCeEEecccCCCCHHHHHHHHHhc
Q 018833 67 WGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGFDGWRFDFVKGYAPSITKVYMENT 145 (350)
Q Consensus 67 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~-~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~ 145 (350)
|.+.+. ...+.+..++..++.+.+...+||+|++||+|++.+.++++ +|.+ .||||||+|+++++..+++. .....
T Consensus 153 w~~~~~-~s~~~~~e~~~~~~l~~~~~~~pDln~~n~~V~~~~~~~l~~~~~~-~gvdGfRiD~v~~~~~~~~~-~~~~~ 229 (545)
T KOG0471|consen 153 WLSVFG-GSAWPFDEGRQKYYLGQFAVLQPDLNYENPDVRKAIKEWLRDFWLE-KGVDGFRIDAVKGYAGENFK-NMWPD 229 (545)
T ss_pred hHhhhc-cccCcccccccceeccchhhcCCCCCCCCHHHHHHHHHHHHHHHhh-cCCCeEEEEccccccccccc-ccccC
Confidence 766544 34466777788999999999999999999999999999999 7776 99999999999999988877 44445
Q ss_pred CCCcEEEeecCCCCCCCCCCCCCCCCcchhHHHHHH--HhcCCceeEecccchHHHHHhhccc---ccccccccCCC---
Q 018833 146 SPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWV--QAAGGAVAAFDFTTKGILQAAVQGE---LWRLKDSNGKP--- 217 (350)
Q Consensus 146 ~p~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~g~---~~~~~~~~~~~--- 217 (350)
.|.+..||.+.+.++.......|..+........+. .........+.+.-...+....... +.++.......
T Consensus 230 ~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~~~ 309 (545)
T KOG0471|consen 230 EPVFDVGEKLQDDNYVAYQYNDYGEDQPEIHDLIRAERFLLDDYSAAFGFGDKRILQTEAYSSLEQLLRLLENSSKPRGS 309 (545)
T ss_pred CCcccceeEecCcchhhcccccccccchhhhhHHHHHHhhhhhhhhcccccchhhhhhhhhccHHHHHhhhccCCCCccc
Confidence 678889999887665433334443332222221111 1111222333322211111111000 00000000000
Q ss_pred ----------------CCc--------ccC-C--CCcccccccCCCCCcCCCCCCCCcchHHHHHHHHHcCCCceeEecC
Q 018833 218 ----------------PGF--------IGI-L--PQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYD 270 (350)
Q Consensus 218 ----------------~~~--------~~~-~--~~~~v~f~~nHD~~r~~~~~~~~~~~~~~a~a~ll~~pG~P~iy~G 270 (350)
.+. ... . ...+...++|||..|..++++.. ..++..++++++||+|.+|+|
T Consensus 310 ~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~a~W~~~~~~~~r~~sr~~~~--~~~~~~~l~~tlpG~~~~y~g 387 (545)
T KOG0471|consen 310 DLPFNFDTLSDLGLTVASIYKEVEVDWLSNHDTENRWAHWVLGNHDQARLASRFGSD--SVDLLNVLLLTLPGTPVTYYG 387 (545)
T ss_pred cccchhhhhhhhhccchHHHHHHHHHHHhcCCccCCceeeeecCccchhhHHHhcch--hHHHHhHHhcccCCCceEEEe
Confidence 000 000 0 01123355666667766665533 366777999999999999999
Q ss_pred CCC------------------------CC-----------------------------------chHHHHHHHHHHHHhc
Q 018833 271 HFF------------------------DW-----------------------------------GLKEAISKLAAVRNRN 291 (350)
Q Consensus 271 ~~~------------------------~w-----------------------------------~l~~~~~~L~~lR~~~ 291 (350)
+|+ .| ++...++++..+|+.+
T Consensus 388 ~e~g~~~~~~~~~~~~~~~~~~~rt~~~w~~~~~~gfs~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~lr~~~ 467 (545)
T KOG0471|consen 388 EEIGMDDVAISGEDGEDPKLMQSRTPMQWDESTNAGFSEASKTWLPVNADYTVINVKMQSGDPQSTLKLFKRLLDLRKSE 467 (545)
T ss_pred EEeeccceeeccCCCcCcHHhccCCccccccccccCCCCccCcceeccccchhheeeccccCCccHHHHHHHHHHHhhhc
Confidence 843 23 2788999999999998
Q ss_pred CccCCcceEEEecCCCEEEEEE----CCEEEEEeCCC
Q 018833 292 GINTASRVNILASDADVYIAAI----GDRVIMKIGPK 324 (350)
Q Consensus 292 ~~l~~g~~~~~~~~~~~~~~~r----~~~~lv~~n~~ 324 (350)
..+..|....-..++.+++|.| .+..++++|..
T Consensus 468 ~~~~~g~~~~~~~~~~if~~~r~~~~~~~~~~~~~~~ 504 (545)
T KOG0471|consen 468 RSYLHGSFVLFAATPGLFSFSRNWDGNERFIAVLNFG 504 (545)
T ss_pred ccccccceeeecCCCceEEEEeccCCCceEEEEEecC
Confidence 7788888888888899999998 45666666664
No 32
>PLN02877 alpha-amylase/limit dextrinase
Probab=99.97 E-value=3e-30 Score=258.98 Aligned_cols=138 Identities=17% Similarity=0.227 Sum_probs=97.4
Q ss_pred CCcccCCCCCCCCC-------HHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCCCcccceeecCCCCCCCCCCCCCcccc
Q 018833 2 PGRLYDLDASKYGS-------QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICR 74 (350)
Q Consensus 2 p~d~~~id~~~~Gt-------~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 74 (350)
|..|+.+. ..|+| ..|||+||++||++||+||||+|+|||+..++..... .++.-.+ .|+.+ .
T Consensus 445 P~~YfaPE-gSYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s--~ld~~vP----~YY~r---~ 514 (970)
T PLN02877 445 PVLWGVPK-GSYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHSSGPFDENS--VLDKIVP----GYYLR---R 514 (970)
T ss_pred ccccCCCC-cccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccCCCCcchhh--cccCCCC----CceEE---E
Confidence 77899999 99998 4689999999999999999999999998655421000 0000000 00000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHH---HHhcC-----
Q 018833 75 GDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVY---MENTS----- 146 (350)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~---~~~~~----- 146 (350)
+..+.... .....+.+.+++.||++|++.+++|++|+||||||||.+.+++.+.+.++ ++++.
T Consensus 515 ------~~~G~~~n---s~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i~~~tm~~~~~~L~~i~~~~~~ 585 (970)
T PLN02877 515 ------NSDGFIEN---STCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGHLMKRTMVRAKDALQSLTLERDG 585 (970)
T ss_pred ------CCCCCccc---CCccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEccccccHHHHHHHHHHHHHHhhhhcc
Confidence 00111100 11223467889999999999999999999999999999999999977776 55552
Q ss_pred ---C-CcEEEeecCCC
Q 018833 147 ---P-DFAVGEKWDSL 158 (350)
Q Consensus 147 ---p-~~~~~E~~~~~ 158 (350)
| ++++||.|...
T Consensus 586 ~dg~~i~lyGEgW~~g 601 (970)
T PLN02877 586 VDGSSIYLYGEGWDFG 601 (970)
T ss_pred cCCCceEEEEeCCCCC
Confidence 4 67999999743
No 33
>KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.7e-28 Score=214.93 Aligned_cols=309 Identities=19% Similarity=0.295 Sum_probs=204.6
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCC-----CcccceeecCCCC---CCCCCCCCCc-cccCC
Q 018833 6 YDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-----GRGIYCIFEGGTS---DDRLDWGPSF-ICRGD 76 (350)
Q Consensus 6 ~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~-----~~~~~~~~~~~~~---~~~~~w~~~~-~~~~~ 76 (350)
|+++ .|-|.+++|+.||.+|.+.|.|+++|+|+|||+..... ..+.+ .+++... -++..|+... .|...
T Consensus 85 YKL~-tRSGNE~eF~dMV~RCN~VGVRiyVDvv~NHM~g~~~~G~~vGt~Gs~-~~p~s~SfPGVPYs~~DFn~~kc~~~ 162 (504)
T KOG2212|consen 85 YKLC-TRSGNEDEFRDMVTRCNNVGVRIYVDAVINHMCGNAVSGGTVGTCGSY-FNPGSRSFPGVPYSGWDFNDGKCKTG 162 (504)
T ss_pred EEee-ccCCCHHHHHHHHHHhhccceEEEehhhhhhhccccccCCccccccCc-cCCCCCCCCCCCcccccCCCcccCCC
Confidence 6789 99999999999999999999999999999999863210 00000 0111000 1122332211 11111
Q ss_pred ----CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcC------
Q 018833 77 ----KEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTS------ 146 (350)
Q Consensus 77 ----~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~------ 146 (350)
..|.+. .........++.|||..+..||..+++.+..+++ +||.|||+||+|||.++-++.|+..++
T Consensus 163 ~~~i~~~Nda--~~V~~C~LVGL~DL~Q~s~~Vr~Kive~L~hLid-lGVAGFRvDAsKHMwp~Di~~I~~~l~nLnsD~ 239 (504)
T KOG2212|consen 163 SGDIENYNDA--TQVRDCRLVGLLDLAQGSDYVRSKIAEYLNHLID-IGVAGFRVDASKHMWPGDIKAILDKLHNLNSDW 239 (504)
T ss_pred ccccccccch--hhhhcceEeecchhhhcchHHHHHHHHHHHHHHH-hccceeeechhhccChHHHHHHHHHHhhccccc
Confidence 111111 1223445578899999999999999999999998 999999999999999988777743321
Q ss_pred -----CCcEEEeecCCCCCCCCCCCCCCCCcchhHHHHHHHhcCCceeEecccchHHHHHhhccc-ccccccccCCCCCc
Q 018833 147 -----PDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE-LWRLKDSNGKPPGF 220 (350)
Q Consensus 147 -----p~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~-~~~~~~~~~~~~~~ 220 (350)
..|++-|++.... +... -.+|. +...+..|.+...+-.++++. .+.++..+...-++
T Consensus 240 f~s~srpfi~qEVID~Gg------E~v~-------~~dY~----g~G~~TeF~f~~~ig~~~r~~~~~kyL~nwG~~wGf 302 (504)
T KOG2212|consen 240 FPSGSKPFIYQEVIDLGG------EPIK-------SSDYF----GNGRVTEFKFGAKLGTVIRKWNKMKYLKNWGEGWGF 302 (504)
T ss_pred ccCCCCceehhhhhhcCC------ceee-------ccccc----CCceeeeeechHHHHHHHhcchhHHHHHhcCCccCc
Confidence 1467777775321 1111 11333 255667777788888888664 33333333322222
Q ss_pred ccCCCCcccccccCCCCCcCCCCC-----C-CCcchHHHHHHHHHcCC-CceeEecCCC---------------------
Q 018833 221 IGILPQNAVTFIDNHDTGSTQRLW-----P-FPSDKVMLGYAYILTHP-GTPCIFYDHF--------------------- 272 (350)
Q Consensus 221 ~~~~~~~~v~f~~nHD~~r~~~~~-----~-~~~~~~~~a~a~ll~~p-G~P~iy~G~~--------------------- 272 (350)
. ...++++|++|||+.|..+-- . ....+.++|.+|+|..| |+|-+...--
T Consensus 303 ~--~s~~~L~FvDNHDNQR~~gagga~VltYK~~~~YkmA~~FmLA~PyG~~RVMSSFaF~~~D~~PP~~~~~~i~SP~F 380 (504)
T KOG2212|consen 303 M--PSDRALVFVDNHDNQRGHGAGGASVLTYKDARLYKMAVGFMLAHPYGFTRVMSSFAFDVNDWVPPPNNNGVIKSPTF 380 (504)
T ss_pred C--CCcceEEEeccCcccccCCCCcceEEEecchhhhhhhhhhheecccCcchhheeeeeecCCCCCCCCCCcceeccee
Confidence 2 235889999999999876531 1 13457999999999999 9999887531
Q ss_pred -------CCC---chHHHHHHHHHHHHhcCccCCcceEEEe-cCCCEEEEEECCEEEEEeCCC-CCC-----CCcCCCCc
Q 018833 273 -------FDW---GLKEAISKLAAVRNRNGINTASRVNILA-SDADVYIAAIGDRVIMKIGPK-MDI-----GNLIPSDF 335 (350)
Q Consensus 273 -------~~w---~l~~~~~~L~~lR~~~~~l~~g~~~~~~-~~~~~~~~~r~~~~lv~~n~~-~~~-----~~~~~~~~ 335 (350)
-+| .....|+.|.++|++ .+...++-.+ ...+.++|.|+++.++++|+. ++. +.++-++|
T Consensus 381 n~D~tC~~GWvCEHRWrqI~~Mv~FrnA---V~~t~~~~w~d~g~nqIaF~Rg~kGF~A~Nn~~~d~s~~l~T~LPAGtY 457 (504)
T KOG2212|consen 381 NPDTTCGNGWVCEHRWRQIRNMVNFRNA---VDGTPFTNWYDNGSNQIAFGRGNRGFIAFNNDDWDFSLTLQTGLPAGTY 457 (504)
T ss_pred CCCCcccCceeeechHHHHHHHHhhhhh---cCCccccceeeCCCcEEEEecCCccEEEEeCcchhHHHHHhcCCCCCce
Confidence 134 468999999999986 4444555444 447899999999999999985 232 22233477
Q ss_pred EEEEcC
Q 018833 336 KVAADG 341 (350)
Q Consensus 336 ~~~~~~ 341 (350)
+++++|
T Consensus 458 CDviSG 463 (504)
T KOG2212|consen 458 CDVISG 463 (504)
T ss_pred eeeecc
Confidence 777776
No 34
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.2e-28 Score=237.87 Aligned_cols=279 Identities=19% Similarity=0.237 Sum_probs=159.3
Q ss_pred CCcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCCCCCC
Q 018833 2 PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSD 81 (350)
Q Consensus 2 p~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 81 (350)
|.-||++. .+|||.+|||+||++||++||.||||+|+||++.+... ...|++..-..+.++. ....+.|.
T Consensus 200 ~~g~yAp~-sryGtPedfk~fVD~aH~~GIgViLD~V~~HF~~d~~~----L~~fdg~~~~e~~~~~----~~~~~~Wg- 269 (628)
T COG0296 200 GTGYYAPT-SRYGTPEDFKALVDAAHQAGIGVILDWVPNHFPPDGNY----LARFDGTFLYEHEDPR----RGEHTDWG- 269 (628)
T ss_pred cceecccc-ccCCCHHHHHHHHHHHHHcCCEEEEEecCCcCCCCcch----hhhcCCccccccCCcc----cccCCCcc-
Confidence 56799999 99999999999999999999999999999999986531 0011210000000000 00001111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC------------------------HHH
Q 018833 82 GQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA------------------------PSI 137 (350)
Q Consensus 82 ~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~------------------------~~~ 137 (350)
... .|+..++||++|++...+|+++|+|||+|+|||..|. .++
T Consensus 270 ------------~~i-~~~gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV~smly~d~~~~~~~~~~n~~ggr~n~~a~ef 336 (628)
T COG0296 270 ------------TAI-FNYGRNEVRNFLLANALYWLEEYHIDGLRVDAVASMLYLDYSRAEGEWVPNEYGGRENLEAAEF 336 (628)
T ss_pred ------------cch-hccCcHHHHHHHHHHHHHHHHHhCCcceeeehhhhhhccchhhhhhcccccccCCcccHHHHHH
Confidence 111 4455899999999999999999999999999997772 112
Q ss_pred HHHH---HHhcCC-CcEEEeecCCCCCCCCCCCCCCCCcchhHHHHHHHhcCCceeEecccch-HHHHHhh--ccc--cc
Q 018833 138 TKVY---MENTSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTK-GILQAAV--QGE--LW 208 (350)
Q Consensus 138 ~~~~---~~~~~p-~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~--~g~--~~ 208 (350)
.+.. +....| .+.|+|.|.+-.... +.... ....|++... ..+.+.+ .+. ..
T Consensus 337 l~~~n~~i~~~~pg~~~iaeestd~~~~t--------------~~~~~-----gG~gf~yk~nmg~m~D~~~y~~~~~~~ 397 (628)
T COG0296 337 LRNLNSLIHEEEPGAMTIAEESTDDPHVT--------------LPVAI-----GGLGFGYKWNMGWMHDTLFYFGKDPVY 397 (628)
T ss_pred hhhhhhhhcccCCCceeeeeeccCCCCce--------------eeecc-----cccchhhhhhhhhHhhHHHhcccCccc
Confidence 2222 222345 678999987532110 00000 0111222111 1122221 111 11
Q ss_pred ccccccCCCCCcccCCCCcccccccCCCCC--cCCCCC-------CCCcchHHHHHHHHHcCCCceeEecCCCCC-----
Q 018833 209 RLKDSNGKPPGFIGILPQNAVTFIDNHDTG--STQRLW-------PFPSDKVMLGYAYILTHPGTPCIFYDHFFD----- 274 (350)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~--r~~~~~-------~~~~~~~~~a~a~ll~~pG~P~iy~G~~~~----- 274 (350)
+-.......-++. ..+...+.++-|||+- -..++. -...+.++.++++|++.||+|++|||+|++
T Consensus 398 r~~~h~~~tf~~~-y~~se~~~l~~sHDevvhGk~sl~~rm~g~~~~~~a~lr~~~a~~~~~Pgk~LLFMG~Efgq~~e~ 476 (628)
T COG0296 398 RKYHHGELTFGLL-YAFSENVVLPLSHDEVVHGKRSLGERMPGDAWQKFANLRALAAYMWLHPGKPLLFMGEEFGQGREW 476 (628)
T ss_pred cccccCCCccccc-cccceeEeccccccceeecccchhccCCcchhhhHHHHHHHHHHHHhCCCceeeecchhhccCCCC
Confidence 1111111001111 1234557899999994 222211 113346889999999999999999999875
Q ss_pred -------C-------------chHHHHHHHHHHHHhcCcc-----CCcceEEEecC---CCEEEEEE-----CCEEEEEe
Q 018833 275 -------W-------------GLKEAISKLAAVRNRNGIN-----TASRVNILASD---ADVYIAAI-----GDRVIMKI 321 (350)
Q Consensus 275 -------w-------------~l~~~~~~L~~lR~~~~~l-----~~g~~~~~~~~---~~~~~~~r-----~~~~lv~~ 321 (350)
| ++..+.+.|.++-+..+++ ....+.|+..+ +++++|.| +++.+|++
T Consensus 477 ~~~~~~~w~~L~~~~~~g~~~~~~~~~~~ln~~y~~~~~l~~~~~~~~~~~W~~~~~~~~~v~af~R~l~~~~~~~lv~~ 556 (628)
T COG0296 477 NFFSSLDWLLLDQAVREGRHKEFRRLVRDLNALYRIPDPLHEQDFQPEGFEWIDADDAENSVLAFYRRLLALRHEHLVVV 556 (628)
T ss_pred cccCCCChhhhhhccccchHHHHHHHHHhhHHhhccCCccchhhhcccCCceeecCchhhhHHHHHHHHhhcCCceEEEE
Confidence 2 1233334444355555555 34456676543 36888877 45556566
Q ss_pred CC
Q 018833 322 GP 323 (350)
Q Consensus 322 n~ 323 (350)
|+
T Consensus 557 ~n 558 (628)
T COG0296 557 NN 558 (628)
T ss_pred eC
Confidence 55
No 35
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.4e-28 Score=241.03 Aligned_cols=251 Identities=21% Similarity=0.283 Sum_probs=150.9
Q ss_pred CCcccCCCCCCCCC-------HHHHHHHHHHHHHCCCEEEEEEeccCCCCCCC--------CCcccceeecCCCCCCCCC
Q 018833 2 PGRLYDLDASKYGS-------QADLKSLIQAFRQKGIKCLADMVINHRTAERK--------DGRGIYCIFEGGTSDDRLD 66 (350)
Q Consensus 2 p~d~~~id~~~~Gt-------~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~--------~~~~~~~~~~~~~~~~~~~ 66 (350)
|..|++++ ++|-+ ..|||.||+++|++||.||||||+|||+.... .-.+.||.+....
T Consensus 244 P~~fFAp~-~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~~~g~t~~f~~id~~~Yyr~~~d------ 316 (697)
T COG1523 244 PLNFFAPE-GRYASNPEPATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGNELGPTLSFRGIDPNYYYRLDPD------ 316 (697)
T ss_pred cccccCCC-ccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeccCcccccCcCcccccccCCcCceEEECCC------
Confidence 67788888 77765 45999999999999999999999999975321 1111122111100
Q ss_pred CCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHH-HH----H
Q 018833 67 WGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSIT-KV----Y 141 (350)
Q Consensus 67 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~-~~----~ 141 (350)
..|.+ ..+....||.++|.||++|+++++||++|++|||||||.+..+..+.. .. +
T Consensus 317 ----------g~~~N---------~TGcGNtln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l~r~~~~~~~~~~l 377 (697)
T COG1523 317 ----------GYYSN---------GTGCGNTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVLGRETMLFDINANL 377 (697)
T ss_pred ----------CCeec---------CCccCcccccCChHHHHHHHHHHHHHHHHhCCCceeecchhhccccccccccCcch
Confidence 01111 112223599999999999999999999999999999999988876544 11 1
Q ss_pred HHhc--CC----CcEEEeecCCCC--CCCCCCCCCCCCcchhHHHHHHHhcCCceeEecccchHHHHHhhcccc------
Q 018833 142 MENT--SP----DFAVGEKWDSLS--YGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGEL------ 207 (350)
Q Consensus 142 ~~~~--~p----~~~~~E~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~------ 207 (350)
+..+ .| .-++||.|+... |+-+..|. ...|... +-.+...++..+.|..
T Consensus 378 ~~~~~~~p~l~~~kliAepwD~g~~gyqvG~Fpd---------~~~~aew--------ng~~rD~vr~F~~G~~~~~~~~ 440 (697)
T COG1523 378 FLAGEGDPVLSGVKLIAEPWDIGPGGYQVGNFPD---------SPRWAEW--------NGRFRDDVRRFWRGDAGLVGEF 440 (697)
T ss_pred hhhccCCccccCceeeecchhhcCCCcccccCCC---------ccchhhh--------CCcccccccceeeCCCccHHHH
Confidence 1111 22 237888885432 22122221 1111110 1111222222222221
Q ss_pred -cccccccCCCCCcccCCCCcccccccCCCCCcC-------------------------C----CCCC---------CCc
Q 018833 208 -WRLKDSNGKPPGFIGILPQNAVTFIDNHDTGST-------------------------Q----RLWP---------FPS 248 (350)
Q Consensus 208 -~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~r~-------------------------~----~~~~---------~~~ 248 (350)
.++..+.. .-...+..|.++|+|+..||.-.+ . ...+ ...
T Consensus 441 a~rl~gS~d-~~~~~~~~p~~sINyv~aHDgfTL~D~vsy~~khneange~nrdg~~~n~s~N~g~eg~t~~p~i~~~re 519 (697)
T COG1523 441 AKRLAGSSD-LYKRNGRRPSQSINYVTAHDGFTLWDLVSYNHKHNEANGENNRDGHNDNYSWNHGVEGPTGDPFIHAGRE 519 (697)
T ss_pred HHHhhcCcc-hhhccCCCccceeeEEeecCCCcHhHhhhhccCCChhhcchhhhhhhhhhccccccccCCCCHHHHHhHH
Confidence 12222110 001122457889999999999111 0 0011 012
Q ss_pred chHHHHHHHHHcCCCceeEecCCCCC--------------------Cc------hHHHHHHHHHHHHhcCccCC
Q 018833 249 DKVMLGYAYILTHPGTPCIFYDHFFD--------------------WG------LKEAISKLAAVRNRNGINTA 296 (350)
Q Consensus 249 ~~~~~a~a~ll~~pG~P~iy~G~~~~--------------------w~------l~~~~~~L~~lR~~~~~l~~ 296 (350)
...+..++.+++..|+||+-.|||++ |+ ++++.++|++||+++++|+.
T Consensus 520 ~~~~~~~~tlllsqG~pml~~gDe~~rtq~gnnNsYcqdn~inwlDW~~~~~~~l~~f~~~lIaLRk~~~af~~ 593 (697)
T COG1523 520 RQRTNLLATLLLSQGTPMLLAGDEFGRTQYGNNNAYCQDNEINWLDWSTEANNDLVEFTKGLIALRKAHPAFRR 593 (697)
T ss_pred HHHHHHHHHHHhhcCCcccccccccccccccccccccCCcccceeccCccccHHHHHHHHHHHHHhhhcchhcc
Confidence 23445556677789999999999753 53 79999999999999999976
No 36
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=99.94 E-value=4.2e-26 Score=226.53 Aligned_cols=155 Identities=18% Similarity=0.178 Sum_probs=113.0
Q ss_pred CCcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCC---CCC-----------Cccccee--ecCCCC----
Q 018833 2 PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE---RKD-----------GRGIYCI--FEGGTS---- 61 (350)
Q Consensus 2 p~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~---~~~-----------~~~~~~~--~~~~~~---- 61 (350)
+.||++|| |+|||+++|++||++||++||+||+|+|+||+|.+ +++ +..+|+. |.++.+
T Consensus 51 v~D~~~id-p~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a~~~~~n~wf~dvl~~g~~S~y~~~Fdidw~~~~~~gkv 129 (825)
T TIGR02401 51 VVDHSEIN-PELGGEEGLRRLSEAARARGLGLIVDIVPNHMAVHLEQNPWWWDVLKNGPSSAYAEYFDIDWDPLGGDGKL 129 (825)
T ss_pred CCCCCCcC-CCCCCHHHHHHHHHHHHHCCCEEEEEecccccccccccChHHHHHHHhCCCCCccCceEEeCCCCCCCCce
Confidence 57999999 99999999999999999999999999999999987 321 1223332 221100
Q ss_pred C------------------------C--CC-CCCCCccccCCC-----------------------------CCC--CCC
Q 018833 62 D------------------------D--RL-DWGPSFICRGDK-----------------------------EYS--DGQ 83 (350)
Q Consensus 62 ~------------------------~--~~-~w~~~~~~~~~~-----------------------------~~~--~~~ 83 (350)
. . .. .++..++....+ .|. +..
T Consensus 130 llP~Lg~~y~~~l~~g~l~l~~d~~~~~~l~y~~~~~Pi~p~ty~~il~~~~~~~~~~~l~~ll~~Q~yRL~~Wr~a~~~ 209 (825)
T TIGR02401 130 LLPILGDQYGAVLDRGEIKLRFDGDGTLALRYYDHRLPLAPGTLPELEVLEDVPGDGDALKKLLERQHYRLTWWRVAAGE 209 (825)
T ss_pred eecccCchhhhHHhcCceeeeecCCCceeEEecCccCCcCccchhhhhhhccccCChhhHHHHHHHHHHHhhhhhccccc
Confidence 0 0 00 000111111000 121 233
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC--CHHHHHHHHHhcCC-CcEEEe-ecCC
Q 018833 84 GNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY--APSITKVYMENTSP-DFAVGE-KWDS 157 (350)
Q Consensus 84 ~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~--~~~~~~~~~~~~~p-~~~~~E-~~~~ 157 (350)
.+|..+.+..+++.++.++|+|.+...+.+..|+++.-|||+|||+++++ |..+|+.+.+...| .+++.| ++..
T Consensus 210 inYRrFf~i~~L~~lr~E~~~Vf~~~h~~i~~lv~~g~vdGlRIDh~dGL~dP~~Yl~rLr~~~~~~~yivvEKIl~~ 287 (825)
T TIGR02401 210 INYRRFFDINDLAGVRVEDPAVFDATHRLVLELVAEGLVDGLRIDHIDGLADPEGYLRRLRELVGPARYLVVEKILAP 287 (825)
T ss_pred cCcccccCccccccccCCCHHHHHHHHHHHHHHHHcCCCceEEeccccccCChHHHHHHHHHhcCCCceEEEEEeccC
Confidence 56777778899999999999999999999999998444999999999999 88899999888887 778888 5554
No 37
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=99.91 E-value=1.6e-23 Score=200.74 Aligned_cols=111 Identities=26% Similarity=0.433 Sum_probs=80.5
Q ss_pred CCcccCCCCCCCCCHH------HHHHHHHHHHHCCCEEEEEEeccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccC
Q 018833 2 PGRLYDLDASKYGSQA------DLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRG 75 (350)
Q Consensus 2 p~d~~~id~~~~Gt~~------d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 75 (350)
|.+|++.. .+|||.+ |||.||++||..||-|+||||.||++.+..+. ...|++-.+.-
T Consensus 291 ~~nFFaps-srYgt~~s~~ri~efK~lVd~aHs~GI~VlLDVV~sHaa~n~~d~---l~~fdGid~~~------------ 354 (757)
T KOG0470|consen 291 VTNFFAPS-SRYGTPESPCRINEFKELVDKAHSLGIEVLLDVVHSHAAKNSKDG---LNMFDGIDNSV------------ 354 (757)
T ss_pred eeEeeccc-ccccCCCcccchHHHHHHHHHHhhCCcEEehhhhhhhcccCcCCc---chhccCcCCce------------
Confidence 67899999 9999999 99999999999999999999999999843211 11122210000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC
Q 018833 76 DKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY 133 (350)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~ 133 (350)
.|..+. ..........-+|+.++.|+++|++.++||+.|++|||||+|.+..|
T Consensus 355 --Yf~~~~---r~~h~~~~~r~fn~~~~~V~rflL~nLr~WVtEY~vDGFRFD~~ssm 407 (757)
T KOG0470|consen 355 --YFHSGP---RGYHNSWCSRLFNYNHPVVLRFLLSNLRWWVTEYHVDGFRFDLVSSM 407 (757)
T ss_pred --EEEeCC---cccccccccccccCCCHHHHHHHHHHHHHHHHheeccceEEcchhhh
Confidence 000000 00011122234899999999999999999999999999999998666
No 38
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=99.83 E-value=5.6e-20 Score=183.81 Aligned_cols=72 Identities=22% Similarity=0.146 Sum_probs=57.7
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC--CHHHHHHHHHhcC-CCcEEEeec
Q 018833 84 GNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY--APSITKVYMENTS-PDFAVGEKW 155 (350)
Q Consensus 84 ~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~--~~~~~~~~~~~~~-p~~~~~E~~ 155 (350)
.+|..+.+.+++.-+.-++|+|-+..-..+..|+++=-|||+|||.+..+ |...++.+-+... |.+++.|-+
T Consensus 256 iNYRRFFdIn~L~~lRvE~~~VF~~tH~li~~L~~~G~vdGlRIDHiDGL~DP~~Yl~rLr~~~~~~~yivvEKI 330 (879)
T PRK14511 256 INYRRFFDVNTLAAVRVEDPEVFEETHALILRLLREGLVDGLRIDHPDGLADPRGYLRRLRRRTGRGAYIVVEKI 330 (879)
T ss_pred cCcceeecchhheeeecCCHHHHHHHHHHHHHHHHCCCCCeEEeCCCccccCHHHHHHHHHhccCCCCeEEEEec
Confidence 36666677788999999999999999999999999777999999999998 4556666644444 566777765
No 39
>smart00642 Aamy Alpha-amylase domain.
Probab=99.37 E-value=5.6e-13 Score=110.74 Aligned_cols=41 Identities=34% Similarity=0.656 Sum_probs=40.1
Q ss_pred CCcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 2 PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 2 p~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
|.||++++ |+|||+++|++||++||++||+||+|+|+||+|
T Consensus 56 ~~d~~~i~-~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~ 96 (166)
T smart00642 56 ISDYKQID-PRFGTMEDFKELVDAAHARGIKVILDVVINHTS 96 (166)
T ss_pred ccccCCCC-cccCCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Confidence 68999999 999999999999999999999999999999998
No 40
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=99.27 E-value=4.6e-10 Score=116.75 Aligned_cols=191 Identities=15% Similarity=0.167 Sum_probs=108.7
Q ss_pred CCCCCCCCC-----CHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHH---HhcCC-CcEEEeecCCCCCCCC
Q 018833 93 QPAPDIDHL-----NPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYM---ENTSP-DFAVGEKWDSLSYGPD 163 (350)
Q Consensus 93 ~~~~dln~~-----n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~---~~~~p-~~~~~E~~~~~~~~~~ 163 (350)
+++..|+|. ||.+|++|+++.+-..+ =.+|||+|.++.-|...-+.++ ++++| .+++||.+.+++
T Consensus 474 GDcVKLRYG~~peDsP~LW~~M~~Y~~~~Ak--iF~G~RiDNCHSTPlhVaeylLd~AR~vnPnLyV~AELFTGSe---- 547 (1464)
T TIGR01531 474 GDSVKLRYGNKPEDSPYLWQHMKEYTEMTAR--IFDGVRIDNCHSTPIHVAEYLLDAARKYNPNLYVVAELFTGSE---- 547 (1464)
T ss_pred cceeeeccCCCCcCCHHHHHHHHHHHHHHHH--hhcceeeecccCCcHHHHHHHHHHHhhcCCCeEEEeeecCCcH----
Confidence 566666664 58999999999998876 7899999999999988777774 55688 669999998643
Q ss_pred CCCCCCCCcchhHHH-HHHHhcCCceeEecccchHHHHHhhc----ccccccccccCC---------CCCcccCCCCccc
Q 018833 164 GKPDANQDGHRGALK-DWVQAAGGAVAAFDFTTKGILQAAVQ----GELWRLKDSNGK---------PPGFIGILPQNAV 229 (350)
Q Consensus 164 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~----g~~~~~~~~~~~---------~~~~~~~~~~~~v 229 (350)
++. .|... ......|++|.+ +++.++....+. ....+...+.+++
T Consensus 548 ------------e~D~~Fv~r---------LGInsLIREAm~a~~~~El~rlv~r~GG~PIGs~~~~~~~~l~~~~~hAL 606 (1464)
T TIGR01531 548 ------------TLDNVFVNR---------LGISSLIREAMSAWDSHEEGRLVYRYGGRPVGSFKQVSPRILTASIAHAL 606 (1464)
T ss_pred ------------HHHHHHHHH---------hhHHHHHHHHHhcCCHHHhhhHHHHhCCcccccccccccccccCCCCCce
Confidence 111 22221 112344555532 223333221110 0011111223444
Q ss_pred ccccCCCCCcCCCCCCCCcchHHHHHHHHHcCCCceeEecCCCC---------------CC-------chHHHHHHHHHH
Q 018833 230 TFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFF---------------DW-------GLKEAISKLAAV 287 (350)
Q Consensus 230 ~f~~nHD~~r~~~~~~~~~~~~~~a~a~ll~~pG~P~iy~G~~~---------------~w-------~l~~~~~~L~~l 287 (350)
-+=-+||++.-..... ..+.+-.|+...|+...+=..+-=||+ .| ++...=+.|++|
T Consensus 607 fmD~THDNe~P~qkRt-~~DtLp~aAlVam~~~aiGS~~GyDE~~P~~i~vV~E~R~Y~~~~~~~~~~GI~~~k~~LN~l 685 (1464)
T TIGR01531 607 FMDCTHDNESPIEKRS-VYDTLPSAALVSMASCAIGSNRGYDELVPHHIHVVSEERYYISWPTGSPSSGIIKAKAALNKL 685 (1464)
T ss_pred eeecCCCCCCccccCC-ccccchHHHHHHHhcCccccccCcccccCCcccccCCccccCcCCCCCCCCcHHHHHHHHHHH
Confidence 3334999986543333 234566665555655554444322321 12 356666677778
Q ss_pred HHhcCccCCcc-eEEEe-cCCCEEEEEE
Q 018833 288 RNRNGINTASR-VNILA-SDADVYIAAI 313 (350)
Q Consensus 288 R~~~~~l~~g~-~~~~~-~~~~~~~~~r 313 (350)
|..-. ..|- ...++ .+++++++.|
T Consensus 686 H~~l~--~~g~~e~~vh~~~~~~itv~R 711 (1464)
T TIGR01531 686 HTSLG--EKGFIQVYVDQMDGDIVAVTR 711 (1464)
T ss_pred HHHHH--HcCCCeEeEeccCCCEEEEEE
Confidence 77632 2222 22233 3789999998
No 41
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.24 E-value=5.7e-11 Score=126.80 Aligned_cols=72 Identities=19% Similarity=0.124 Sum_probs=54.9
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC--CHHHHHHHHH------h-----cCCCcE
Q 018833 84 GNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY--APSITKVYME------N-----TSPDFA 150 (350)
Q Consensus 84 ~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~--~~~~~~~~~~------~-----~~p~~~ 150 (350)
.+|..+.+.+++.-+.-++|+|-+..-..+..|+++=-|||.|||.+..+ |...++.+-+ . ..|.++
T Consensus 1030 iNYRRFFdIn~L~~lRvE~~~VF~~tH~li~~L~~~G~vdGlRIDHiDGL~dP~~Yl~rLr~~~~~~~~~~~~~~~~~yi 1109 (1693)
T PRK14507 1030 INYRRFFDINSLAALRMERPDVFEATHALLFRLIAEGRIDGLRIDHPDGLADPAGYFRRLQAAVGAGPGPAGRPPPGLYI 1109 (1693)
T ss_pred cCcceeecchhheeeeccCHHHHHHHHHHHHHHHHCCCCCeEEeCCCccccCHHHHHHHHHHHhhhhhcccccCCCCceE
Confidence 35555666688888889999999999999999999788999999999998 4555666521 1 245667
Q ss_pred EEeec
Q 018833 151 VGEKW 155 (350)
Q Consensus 151 ~~E~~ 155 (350)
+.|-+
T Consensus 1110 vvEKI 1114 (1693)
T PRK14507 1110 VVEKI 1114 (1693)
T ss_pred EEEec
Confidence 77765
No 42
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=99.03 E-value=1.9e-09 Score=104.63 Aligned_cols=71 Identities=21% Similarity=0.187 Sum_probs=52.9
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC--CHHHHHHHHHhcCC-CcEEEeec
Q 018833 85 NDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY--APSITKVYMENTSP-DFAVGEKW 155 (350)
Q Consensus 85 ~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~--~~~~~~~~~~~~~p-~~~~~E~~ 155 (350)
+|..+....++.-+.-+.+.|-+.--..+..|+.+==|||.|+|.+..+ |...++.+-++..| .+++-|-+
T Consensus 260 nyRRFF~Vn~L~glRvEd~~VF~~tH~li~~L~~eglidGlRIDHiDGLaDP~gYl~rLR~~~G~~~~I~VEKI 333 (889)
T COG3280 260 NYRRFFDVNSLAGLRVEDPAVFEATHRLIFELLREGLIDGLRIDHIDGLADPKGYLRRLRQLVGPDRYIVVEKI 333 (889)
T ss_pred CeeeeeeccchheeeeccHHHHHHHHHHHHHHHHhccccceeecccccccCHHHHHHHHHHhcCCCcEEEEehh
Confidence 4444555577777777888888888888888888666999999999998 45577777677765 56666654
No 43
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=98.86 E-value=5.2e-08 Score=94.10 Aligned_cols=206 Identities=21% Similarity=0.340 Sum_probs=122.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH---------hcCCCeEEecccCCCCHHHHHHH---HHhc----------
Q 018833 88 TGEDFQPAPDIDHLNPRVQKELSDWMNWLKT---------EIGFDGWRFDFVKGYAPSITKVY---MENT---------- 145 (350)
Q Consensus 88 ~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~---------~~gvDGfR~D~a~~~~~~~~~~~---~~~~---------- 145 (350)
.+..+.--.|.|-+||.||.+.+.|+.|+++ +..+||||+|||.++..+.++-. .++.
T Consensus 136 gGyEfLLaNDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNVdADlLqia~dyfkaaYgv~~~~a~A 215 (809)
T PF02324_consen 136 GGYEFLLANDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNVDADLLQIAGDYFKAAYGVDKNDANA 215 (809)
T ss_dssp SS-S--SSEEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS-THHHHHHHHHHHHHH-TTTBHHHH
T ss_pred CcceeEEeccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeecccccCHHHHHHHHHHHHHHhCCCcChhhH
Confidence 3455566668899999999999999999997 56799999999999998866554 3322
Q ss_pred CCCcEEEeecCCCCCCCCCCCCCCCCcchhHHHHHHHhcCCceeEecccchHHHHHhhcc------cccccccccC--CC
Q 018833 146 SPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG------ELWRLKDSNG--KP 217 (350)
Q Consensus 146 ~p~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g------~~~~~~~~~~--~~ 217 (350)
...+.|-|.|... =+.|....+.....+|..++..+..++.. .+..+..... +.
T Consensus 216 n~HlSilE~ws~n------------------d~~y~~~~g~~qL~mD~~~~~~l~~sL~~~~~~R~~l~~li~~slvnR~ 277 (809)
T PF02324_consen 216 NKHLSILEAWSSN------------------DPDYVKDTGNPQLTMDNGLRLALLYSLTRPSNNRSGLEPLITNSLVNRS 277 (809)
T ss_dssp CTC--EESSSTTT------------------HHHHHHHTTSSSBEEEHHHHHHHHHHTSS-TTC---CTHHHHSSSSECS
T ss_pred hhhheeeeccccC------------------ChHHHhcCCCceeeecHHHHHHHHHHhcCCccccccHHHHhhhhhcccc
Confidence 3477889999742 13677777777778888888877776532 1222222111 00
Q ss_pred CCcccCCCCcccccccCCCCCc-----------C-CCCCC-------------------------CCcchHHHHHHHHHc
Q 018833 218 PGFIGILPQNAVTFIDNHDTGS-----------T-QRLWP-------------------------FPSDKVMLGYAYILT 260 (350)
Q Consensus 218 ~~~~~~~~~~~v~f~~nHD~~r-----------~-~~~~~-------------------------~~~~~~~~a~a~ll~ 260 (350)
............+|+.+||.+- . ....+ +..--+-.++|+||+
T Consensus 278 ~d~~en~a~pNYsFvrAHDsevQ~vI~~II~~~i~~~~dg~t~t~d~l~qAf~iYnaD~~~~~K~Yt~yNiPsaYAllLt 357 (809)
T PF02324_consen 278 NDSTENEAQPNYSFVRAHDSEVQTVIAQIIKDKINPNSDGLTFTLDQLKQAFEIYNADQKKTDKKYTQYNIPSAYALLLT 357 (809)
T ss_dssp EE--SSESS-EEEES-BSSTTTHHHHHHHHHHHT-TTTCTTC--HHHHHHHHHHHHHHHTSSS-SSS-S-HHHHHHHHHH
T ss_pred cCCcCCcccCceeeeecccHHHHHHHHHHHHhhcCCcccCccCCHHHHHHHHHHHHHHHHHhhhhhhccccHHHHHHHHh
Confidence 0000111223467999999941 0 00000 111135579999999
Q ss_pred C-CCceeEecCCCC-------CC--chHHHHHHHHHHHHhcCccCCcc-eEE--Eec-CCCEEEEEE
Q 018833 261 H-PGTPCIFYDHFF-------DW--GLKEAISKLAAVRNRNGINTASR-VNI--LAS-DADVYIAAI 313 (350)
Q Consensus 261 ~-pG~P~iy~G~~~-------~w--~l~~~~~~L~~lR~~~~~l~~g~-~~~--~~~-~~~~~~~~r 313 (350)
= .-+|-|||||-+ .- --++.|..|++-|.++.+. |. +.. +.. ..+++.-.|
T Consensus 358 NKDTVPRVYYGDLYtDdGQYMa~KSpYyDaI~tLLKaRikYvaG--GQtM~~~~~~~~~~~vLtSVR 422 (809)
T PF02324_consen 358 NKDTVPRVYYGDLYTDDGQYMATKSPYYDAITTLLKARIKYVAG--GQTMAVTYLNGDNSGVLTSVR 422 (809)
T ss_dssp -SSSEEEEEHHHHBESSSSTTTSB-TTHHHHHHHHHHHHHH--S---EEEEE--EEETTTSEEEEEE
T ss_pred CCCCCceEEecccccccchhhhhcCchHHHHHHHHHHHHHhhcC--CceeeeecccCCCCceEEEEe
Confidence 6 599999999833 21 2589999999999998633 32 222 222 346877666
No 44
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=98.69 E-value=8.1e-08 Score=92.08 Aligned_cols=90 Identities=21% Similarity=0.310 Sum_probs=66.4
Q ss_pred CCCCCC--HHHHHHHHHHHHH---CCCEEEEEEeccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCCCCCCCCC
Q 018833 10 ASKYGS--QADLKSLIQAFRQ---KGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQG 84 (350)
Q Consensus 10 ~~~~Gt--~~d~~~lv~~aH~---~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 84 (350)
|.-++| .+++-.||..+|. ..|+||.|+|+.|.-..+..- ....|-.+.+
T Consensus 299 PalL~TlRPDElVdfiatLHnFp~gPIqvIyDlVyGHADNQ~~~L-------------------------Ln~~flkGPn 353 (811)
T PF14872_consen 299 PALLETLRPDELVDFIATLHNFPTGPIQVIYDLVYGHADNQALDL-------------------------LNRRFLKGPN 353 (811)
T ss_pred HHHHhcCCcHHHHHHHHHHhcCCCCCeEEEEeeecccccchhhHh-------------------------hhhhhccCCc
Confidence 444555 6899999999997 679999999999986543210 0001112221
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC
Q 018833 85 NDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY 133 (350)
Q Consensus 85 ~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~ 133 (350)
.| .-|||++||.||..+.+.-+.=++ +|+||+|+|.++-.
T Consensus 354 MY--------GQdlnhq~P~VRAILLEmQRRK~n-~GaDGIRVDGgQDF 393 (811)
T PF14872_consen 354 MY--------GQDLNHQNPVVRAILLEMQRRKIN-TGADGIRVDGGQDF 393 (811)
T ss_pred cc--------cccccccChHHHHHHHHHHHhhcc-cCCceeEecccccc
Confidence 21 135999999999999999998888 99999999999665
No 45
>smart00810 Alpha-amyl_C2 Alpha-amylase C-terminal beta-sheet domain. This entry represents the beta-sheet domain that is found in several alpha-amylases, usually at the C-terminus. This domain is organised as a five-stranded anti-parallel beta-sheet.
Probab=98.62 E-value=2.9e-07 Score=61.74 Aligned_cols=55 Identities=62% Similarity=1.111 Sum_probs=51.2
Q ss_pred CCcceEEEecCCCEEEEEECCEEEEEeCCCCCCCCcCCCCcEEEEcCCceEEEec
Q 018833 295 TASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVWEK 349 (350)
Q Consensus 295 ~~g~~~~~~~~~~~~~~~r~~~~lv~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (350)
.+...+++..+.++|+-..++++++-|+..++.+.+.|.+|+++++|++|+||+|
T Consensus 7 ~~S~v~I~~Ae~dlY~A~Id~kv~~KiGp~~~~~~~~P~~w~~a~sG~~yaVWek 61 (61)
T smart00810 7 SRSSLKILAAEADLYVAMIDEKVIMKIGPRYDVGNLIPSGFHLAASGNDYAVWEK 61 (61)
T ss_pred CCCceEEEEecCCcEEEEeCCeEEEEECCCCCcCccCCCCCEEEEECCCEEEEeC
Confidence 4567888889999999999999999999999999999999999999999999997
No 46
>PF07821 Alpha-amyl_C2: Alpha-amylase C-terminal beta-sheet domain; InterPro: IPR012850 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the beta-sheet domain that is found in several alpha-amylases, usually at the C terminus. This domain is organised as a five-stranded anti-parallel beta-sheet [, ]. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0005975 carbohydrate metabolic process; PDB: 1AVA_B 1BG9_A 1AMY_A 1RP8_A 2QPU_A 3BSG_A 2QPS_A 3BSH_A 1RP9_A 1HT6_A ....
Probab=98.20 E-value=5.7e-06 Score=55.11 Aligned_cols=51 Identities=61% Similarity=1.021 Sum_probs=43.2
Q ss_pred CCcceEEEecCCCEEEEEECCEEEEEeCCCCCCCCcCC--CCcEEEEcCCceEEEec
Q 018833 295 TASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIP--SDFKVAADGTDYAVWEK 349 (350)
Q Consensus 295 ~~g~~~~~~~~~~~~~~~r~~~~lv~~n~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 349 (350)
.+...+++..+.++|+-..+++++|-|+.. .+.| ..|+++.+|++|+||+|
T Consensus 7 ~~S~v~I~~Ae~d~YaA~Id~kv~~KiGp~----~~~P~~~~w~~a~~G~dyaVWek 59 (59)
T PF07821_consen 7 CRSKVKILAAEADLYAAIIDDKVIMKIGPR----DWSPSGSGWKLAASGDDYAVWEK 59 (59)
T ss_dssp TT--EEEEEEETTEEEEEETTTEEEEESS-----GGS---TTEEEEEEETTEEEEEE
T ss_pred CCCceEEEEecCCcEEEEECCeEEEEECCC----ccccCCCCcEEEeECCcEEEEeC
Confidence 456788899999999999999999999994 6666 79999999999999997
No 47
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=98.19 E-value=1.5e-05 Score=63.45 Aligned_cols=97 Identities=12% Similarity=0.120 Sum_probs=60.8
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCCCcccceeecC-CCCCCCCCCCCCccccCCCCCCCCCC
Q 018833 6 YDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEG-GTSDDRLDWGPSFICRGDKEYSDGQG 84 (350)
Q Consensus 6 ~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~ 84 (350)
-... |.++ .+-|+++|++||++||+|+.=+.++ .-...-..+++|..... |++.....+
T Consensus 35 ~~~h-p~L~-~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPeW~~~~~~G~~~~~~~~----------------- 94 (132)
T PF14871_consen 35 GPRH-PGLK-RDLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPEWFVRDADGRPMRGERF----------------- 94 (132)
T ss_pred CcCC-CCCC-cCHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCceeeECCCCCCcCCCCc-----------------
Confidence 3446 7777 7889999999999999999666655 22211224566766543 222100000
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecc
Q 018833 85 NDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDF 129 (350)
Q Consensus 85 ~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~ 129 (350)
...+...+...++ -++++.+.++..++.+.+||+=+|.
T Consensus 95 ------~~~~~~~~c~ns~-Y~e~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 95 ------GYPGWYTCCLNSP-YREFLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred ------CCCCceecCCCcc-HHHHHHHHHHHHHHcCCCCEEEecC
Confidence 0001122444344 5589999999999889999998873
No 48
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=97.93 E-value=2.4e-05 Score=57.88 Aligned_cols=47 Identities=13% Similarity=0.203 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhcCccCCcceEEEe----cCCCEEEEEE---CCEEEEEeCCCCC
Q 018833 280 AISKLAAVRNRNGINTASRVNILA----SDADVYIAAI---GDRVIMKIGPKMD 326 (350)
Q Consensus 280 ~~~~L~~lR~~~~~l~~g~~~~~~----~~~~~~~~~r---~~~~lv~~n~~~~ 326 (350)
+||+|++||+++|+|..|.+..+. .++.++++.| +++++|++|.+..
T Consensus 1 ~yr~Li~LRr~~PaL~~~~~~~~~~~~~~~~~l~~~~r~~~~~~l~v~~Nls~~ 54 (89)
T PF11941_consen 1 FYRRLIALRRQHPALRDGDFRFLEVERDAPDALLAFRRTGGGERLLVAFNLSDE 54 (89)
T ss_dssp HHHHHHHHHHHHTHHCCSEEEEEEEEEEEETTEEEEEEEETTEEEEEEEE-SSS
T ss_pred CHHHHHHHHhhCccccCCCcccEEEEecCCCEEEEEEEEcCCceEEEEEecCCC
Confidence 589999999999999999887665 3457777887 5799999999753
No 49
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.82 E-value=0.00011 Score=67.59 Aligned_cols=91 Identities=14% Similarity=0.191 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCCCCCC---CCcccceeecCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRTAERK---DGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF 92 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~---~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (350)
-+=|+.+|++||++||+|..=+.+...+.... ..++.|.... ...|.. .+.+ ..
T Consensus 69 ~DpL~~~I~eaHkrGlevHAW~~~~~~~~~~~~~~~~~p~~~~~~------~~~~~~--------~~~~---------~~ 125 (311)
T PF02638_consen 69 FDPLEFMIEEAHKRGLEVHAWFRVGFNAPDVSHILKKHPEWFAVN------HPGWVR--------TYED---------AN 125 (311)
T ss_pred ccHHHHHHHHHHHcCCEEEEEEEeecCCCchhhhhhcCchhheec------CCCcee--------eccc---------CC
Confidence 67899999999999999996664433322100 0111111000 000100 0000 00
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecc
Q 018833 93 QPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDF 129 (350)
Q Consensus 93 ~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~ 129 (350)
....=||..+|+||+++++.++..++.+.|||+-+|-
T Consensus 126 ~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGIhlDd 162 (311)
T PF02638_consen 126 GGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDGIHLDD 162 (311)
T ss_pred CCceEECCCCHHHHHHHHHHHHHHHhcCCCCeEEecc
Confidence 1122389999999999999999999889999999993
No 50
>PLN02635 disproportionating enzyme
Probab=97.60 E-value=0.00034 Score=68.34 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHCCCEEEEEEecc
Q 018833 17 ADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 17 ~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
++++++-+.||++||+||-|+.+-
T Consensus 224 ~Qw~~l~~yA~~~Gi~L~gDlpi~ 247 (538)
T PLN02635 224 RQWQAVRSYANEKGISIIGDMPIY 247 (538)
T ss_pred HHHHHHHHHHHHCCCEEEEEeecc
Confidence 578899999999999999999963
No 51
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=97.49 E-value=0.00048 Score=63.40 Aligned_cols=98 Identities=19% Similarity=0.219 Sum_probs=63.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCC----CcccceeecC-CCCCCCCCCCCCccccCCCCCCCCC
Q 018833 9 DASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD----GRGIYCIFEG-GTSDDRLDWGPSFICRGDKEYSDGQ 83 (350)
Q Consensus 9 d~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~----~~~~~~~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~ 83 (350)
|+.+|. +.++||+++|++|++|++-+.| +.+.+++. ....|..... +++.....|.
T Consensus 61 d~~~FP---d~~~~i~~l~~~G~~~~~~~~P-~i~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~--------------- 121 (308)
T cd06593 61 DPDRFP---DPEGMLSRLKEKGFKVCLWINP-YIAQKSPLFKEAAEKGYLVKKPDGSVWQWDLWQ--------------- 121 (308)
T ss_pred CcccCC---CHHHHHHHHHHCCCeEEEEecC-CCCCCchhHHHHHHCCeEEECCCCCeeeecccC---------------
Confidence 334554 4689999999999999999987 56555431 1112222111 0000000010
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCH
Q 018833 84 GNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP 135 (350)
Q Consensus 84 ~~~~~~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~ 135 (350)
....-+|+.||++++...+.++.+.+ .|||||-+|....+|.
T Consensus 122 ---------g~~~~~Dftnp~a~~w~~~~~~~~~~-~Gid~~~~D~~e~~p~ 163 (308)
T cd06593 122 ---------PGMGIIDFTNPDACKWYKDKLKPLLD-MGVDCFKTDFGERIPT 163 (308)
T ss_pred ---------CCcccccCCCHHHHHHHHHHHHHHHH-hCCcEEecCCCCCCCc
Confidence 11233899999999999999999888 9999999998766543
No 52
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=97.40 E-value=0.0074 Score=58.96 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHCCCEEEEEEeccCCCCCC
Q 018833 17 ADLKSLIQAFRQKGIKCLADMVINHRTAER 46 (350)
Q Consensus 17 ~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~ 46 (350)
++++++.+.||++||++|.|+.+- ++.++
T Consensus 198 ~Q~~~~~~yA~~~Gi~L~gDLpig-V~~ds 226 (497)
T PRK14508 198 RQWKALKAYANDKGIEIIGDLPIY-VAYDS 226 (497)
T ss_pred HHHHHHHHHHHHCCCEEEEeeecc-cCCCC
Confidence 578889999999999999999975 44444
No 53
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.21 E-value=0.0014 Score=60.19 Aligned_cols=91 Identities=16% Similarity=0.203 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHCCCEEEEEEeccCCCCCCCC----CcccceeecCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCC-
Q 018833 18 DLKSLIQAFRQKGIKCLADMVINHRTAERKD----GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF- 92 (350)
Q Consensus 18 d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~----~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~- 92 (350)
+.++||+++|++|+|+++=+.| +.+.+++. .+..|........ .+.....+
T Consensus 71 dp~~mi~~l~~~G~k~~l~i~P-~i~~~s~~~~e~~~~g~~vk~~~g~-----------------------~~~~~~~w~ 126 (303)
T cd06592 71 DPKGMIDQLHDLGFRVTLWVHP-FINTDSENFREAVEKGYLVSEPSGD-----------------------IPALTRWWN 126 (303)
T ss_pred CHHHHHHHHHHCCCeEEEEECC-eeCCCCHHHHhhhhCCeEEECCCCC-----------------------CCcccceec
Confidence 4889999999999999998888 45444321 1111221111000 00000001
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCC
Q 018833 93 QPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG 132 (350)
Q Consensus 93 ~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~ 132 (350)
....-+|+.||++++.+.+.++.++.+.|||||-+|....
T Consensus 127 g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~ 166 (303)
T cd06592 127 GTAAVLDFTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGEA 166 (303)
T ss_pred CCcceEeCCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCCc
Confidence 1123489999999999999999988669999999998643
No 54
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.19 E-value=0.0018 Score=60.30 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=32.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCC
Q 018833 96 PDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG 132 (350)
Q Consensus 96 ~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~ 132 (350)
.-+|+.||++++...+.++.++++.|||||-+|+...
T Consensus 152 ~~~Dftnp~a~~Ww~~~~~~~~~~~Gidg~w~D~~E~ 188 (340)
T cd06597 152 LMLDFTNPEAAQWWMEKRRYLVDELGIDGFKTDGGEH 188 (340)
T ss_pred eeecCCCHHHHHHHHHHHHHHHHhcCCcEEEecCCCc
Confidence 3489999999999999999988779999999998743
No 55
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=96.93 E-value=0.0011 Score=62.54 Aligned_cols=45 Identities=18% Similarity=0.313 Sum_probs=37.6
Q ss_pred CcccCCCCCCCCC------HHHHHHHHHHHH-HCCCEEEEEEeccCCCCCCCC
Q 018833 3 GRLYDLDASKYGS------QADLKSLIQAFR-QKGIKCLADMVINHRTAERKD 48 (350)
Q Consensus 3 ~d~~~id~~~~Gt------~~d~~~lv~~aH-~~Gi~VilD~V~NH~s~~~~~ 48 (350)
.|..++| |.+.. .++++++|.+++ +.||.+|.|+|+||||.++++
T Consensus 57 ~Dql~~~-~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~DvV~NHtA~nS~W 108 (423)
T PF14701_consen 57 YDQLKFD-PDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDVVLNHTANNSPW 108 (423)
T ss_pred cchhhcC-hhhcCCCccccHHHHHHHHHHHHHHcCceEEEEEeeccCcCCChH
Confidence 4667778 66544 379999999995 799999999999999999874
No 56
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=96.92 E-value=0.016 Score=56.86 Aligned_cols=29 Identities=14% Similarity=0.213 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHCCCEEEEEEeccCCCCCC
Q 018833 17 ADLKSLIQAFRQKGIKCLADMVINHRTAER 46 (350)
Q Consensus 17 ~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~ 46 (350)
++++++-+.|+.+||++|-|+.+- ++.++
T Consensus 212 ~Q~~~l~~yA~~~~I~L~gDlpi~-v~~ds 240 (513)
T TIGR00217 212 SQFQALKRYANDMGIGLYGDLPVF-VAYDS 240 (513)
T ss_pred HHHHHHHHHHhcCCcEEEEeCcce-eCCCc
Confidence 578888999999999999999875 44444
No 57
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=96.82 E-value=0.0051 Score=58.23 Aligned_cols=94 Identities=20% Similarity=0.235 Sum_probs=60.8
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCC--CcccceeecCCCCCCCCCCCCCccccCCCCCCCCCCCCCC
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD--GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDT 88 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~--~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 88 (350)
.+|. ..|+.|++.+|++||+.-|=+-|--++.+++. .+++|....++... ...
T Consensus 100 ~kFP--~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~S~l~~~hPdw~l~~~~~~~----------~~~------------- 154 (394)
T PF02065_consen 100 KKFP--NGLKPLADYIHSLGMKFGLWFEPEMVSPDSDLYREHPDWVLRDPGRPP----------TLG------------- 154 (394)
T ss_dssp TTST--THHHHHHHHHHHTT-EEEEEEETTEEESSSCHCCSSBGGBTCCTTSE-----------ECB-------------
T ss_pred hhhC--CcHHHHHHHHHHCCCeEEEEeccccccchhHHHHhCccceeecCCCCC----------cCc-------------
Confidence 4554 46999999999999999998877766666542 23344322111000 000
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC
Q 018833 89 GEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY 133 (350)
Q Consensus 89 ~~~~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~ 133 (350)
..+--||+.+|+|++++.+.+.-++++.|||.+-+|.-..+
T Consensus 155 ----r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~ 195 (394)
T PF02065_consen 155 ----RNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDI 195 (394)
T ss_dssp ----TTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-T
T ss_pred ----ccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCC
Confidence 01112999999999999999988877899999999986554
No 58
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=96.80 E-value=0.039 Score=56.11 Aligned_cols=66 Identities=15% Similarity=0.238 Sum_probs=49.4
Q ss_pred CCCCCCCCCCC-----HHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHH---HHhcCC-CcEEEeecCCCC
Q 018833 92 FQPAPDIDHLN-----PRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVY---MENTSP-DFAVGEKWDSLS 159 (350)
Q Consensus 92 ~~~~~dln~~n-----~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~---~~~~~p-~~~~~E~~~~~~ 159 (350)
|++...|++.| |.+|++|+++..-=. .=+||+|+|.++.-|.-.-+.+ .++++| .+++||.+.+++
T Consensus 495 WGDsVKLryG~kpeDsPyLWq~M~kY~e~tA--riFdG~RlDNcHsTPlHVaEylLd~ARk~nPnlYVvAELFtgSe 569 (1521)
T KOG3625|consen 495 WGDSVKLRYGNKPEDSPYLWQHMKKYTEITA--RIFDGVRLDNCHSTPLHVAEYLLDAARKLNPNLYVVAELFTGSE 569 (1521)
T ss_pred ecceeeeccCCCcccChHHHHHHHHHHHHHH--HHhcceeeccCCCCchhHHHHHHHHHHhcCCCeEEEeeeccCCc
Confidence 46677788865 678888888776544 3579999999988886655555 556788 669999998754
No 59
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=96.80 E-value=0.0062 Score=56.29 Aligned_cols=87 Identities=15% Similarity=0.210 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHCCCEEEEEEeccCCCCCCCC----CcccceeecC-CCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCC
Q 018833 18 DLKSLIQAFRQKGIKCLADMVINHRTAERKD----GRGIYCIFEG-GTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF 92 (350)
Q Consensus 18 d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~----~~~~~~~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (350)
+.++||+++|++|+||++-+.+. ++.+++. .+..|+.... +... ...| -
T Consensus 67 dp~~mi~~L~~~G~kv~~~i~P~-v~~~~~~y~e~~~~g~~v~~~~g~~~-~~~w------------------------~ 120 (319)
T cd06591 67 DPKAMVRELHEMNAELMISIWPT-FGPETENYKEMDEKGYLIKTDRGPRV-TMQF------------------------G 120 (319)
T ss_pred CHHHHHHHHHHCCCEEEEEecCC-cCCCChhHHHHHHCCEEEEcCCCCee-eeeC------------------------C
Confidence 46799999999999999966543 4433321 0111111111 0000 0000 0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHH-HHHHhcCCCeEEecccC
Q 018833 93 QPAPDIDHLNPRVQKELSDWMN-WLKTEIGFDGWRFDFVK 131 (350)
Q Consensus 93 ~~~~dln~~n~~v~~~l~~~~~-~w~~~~gvDGfR~D~a~ 131 (350)
....-+|+.||++++...+.++ .+.+ .|||||=+|...
T Consensus 121 g~~~~~Dftnp~a~~w~~~~~~~~~~~-~Gvdg~w~D~~E 159 (319)
T cd06591 121 GNTRFYDATNPEAREYYWKQLKKNYYD-KGVDAWWLDAAE 159 (319)
T ss_pred CCccccCCCCHHHHHHHHHHHHHHhhc-CCCcEEEecCCC
Confidence 1123489999999999888776 4555 999999999974
No 60
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=96.78 E-value=0.0011 Score=64.93 Aligned_cols=34 Identities=38% Similarity=0.608 Sum_probs=28.3
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 10 ASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 10 ~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
|..|||.+||+..|+++|+.||+||-|.||+.+-
T Consensus 640 ptKYGs~~dL~~AikALH~~GiqviaDwVpdQiY 673 (809)
T PF02324_consen 640 PTKYGSVEDLRNAIKALHAAGIQVIADWVPDQIY 673 (809)
T ss_dssp -BTTB-HHHHHHHHHHHHHTT-EEEEEE-TSEE-
T ss_pred CCCCCCHHHHHHHHHHHHHcCcchhhhhchHhhh
Confidence 7899999999999999999999999999999873
No 61
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=96.72 E-value=0.0074 Score=55.71 Aligned_cols=99 Identities=18% Similarity=0.271 Sum_probs=59.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCCC-----cccceeecCCCCCCCCCCCCCccccCCCCCCC
Q 018833 7 DLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDG-----RGIYCIFEGGTSDDRLDWGPSFICRGDKEYSD 81 (350)
Q Consensus 7 ~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~~-----~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 81 (350)
..|+.+|- +.++||+++|++|++|++-+.|- +..+++.. ...|.....
T Consensus 64 ~~d~~~FP---dp~~mi~~Lh~~G~~~~~~i~P~-v~~~~~~~y~~~~~~g~~vk~~----------------------- 116 (317)
T cd06594 64 EWDPERYP---GLDELIEELKARGIRVLTYINPY-LADDGPLYYEEAKDAGYLVKDA----------------------- 116 (317)
T ss_pred EEChhhCC---CHHHHHHHHHHCCCEEEEEecCc-eecCCchhHHHHHHCCeEEECC-----------------------
Confidence 34433554 47899999999999999966543 33332110 011111110
Q ss_pred CCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC
Q 018833 82 GQGNDDTGEDF-QPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY 133 (350)
Q Consensus 82 ~~~~~~~~~~~-~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~ 133 (350)
.+.......+ ....-+|+.||++++...+.++....+.|||||=+|+-..+
T Consensus 117 -~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~~ 168 (317)
T cd06594 117 -DGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEMLLDLGLSGWMADFGEYL 168 (317)
T ss_pred -CCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHHhhhcCCcEEEecCCCCC
Confidence 0000000011 11234889999999999999987644599999999986543
No 62
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=96.60 E-value=0.0049 Score=60.63 Aligned_cols=99 Identities=20% Similarity=0.291 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCC--CCcccceeecCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVINHRTAERK--DGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF 92 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~--~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (350)
..+-.|.+|++||+.||++|.=.-+.-...+-. ...++|..|..+.... +..... . ..|.
T Consensus 168 ~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~~~~~~gv~~eW~ly~d~~~~~---~~~~~l-~--~~w~------------ 229 (559)
T PF13199_consen 168 STSTVKDYINAAHKYGMKAMAYNMIYAANNNYEEDGVSPEWGLYKDDSHSN---QDTYDL-P--DGWP------------ 229 (559)
T ss_dssp EHHHHHHHHHHHHHTT-EEEEEEESSEEETT--S--SS-GGBEEESSSBTS---B-EEEE-T--T-E-------------
T ss_pred hHHHHHHHHHHHHHcCcceehhHhhhccccCcccccCCchhhhhhccCCCc---cceeec-C--cccc------------
Confidence 367899999999999999996544333322211 2445577766532211 000000 0 0000
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccC
Q 018833 93 QPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVK 131 (350)
Q Consensus 93 ~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~ 131 (350)
..+-=+|..|+.-|++|++.++..++.+|+|||-+|...
T Consensus 230 s~lyl~dP~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G 268 (559)
T PF13199_consen 230 SDLYLMDPGNPEWQNYIINQMNKAIQNFGFDGWHLDQLG 268 (559)
T ss_dssp -EEEEB-TT-HHHHHHHHHHHHHHHHHHT--EEEEE-S-
T ss_pred cceEEecCCCHHHHHHHHHHHHHHHHccCCceEeeeccC
Confidence 001127888999999999999999999999999999874
No 63
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=96.56 E-value=0.01 Score=58.28 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHCCCEEEEEEeccCCCCCC
Q 018833 17 ADLKSLIQAFRQKGIKCLADMVINHRTAER 46 (350)
Q Consensus 17 ~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~ 46 (350)
++++++.+.|+++||+||.|+.+- ++.++
T Consensus 192 ~Q~~~~~~~A~~~gI~L~gDlpig-v~~ds 220 (496)
T PF02446_consen 192 KQWKAAKEYAREMGIGLIGDLPIG-VSPDS 220 (496)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEESS---SSS
T ss_pred HHHHHHHHHHHHCCCEEEEeccce-ECCCc
Confidence 578999999999999999999975 44444
No 64
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.49 E-value=0.012 Score=54.35 Aligned_cols=90 Identities=16% Similarity=0.189 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHCCCEEEEEEeccCCCCCCCC----CcccceeecCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCC
Q 018833 18 DLKSLIQAFRQKGIKCLADMVINHRTAERKD----GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQ 93 (350)
Q Consensus 18 d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~----~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (350)
+.++||+++|++|++|++-+.+- ++.+++. ....|+.... ++. .+..+..+.
T Consensus 74 dp~~mi~~L~~~g~k~~~~i~P~-i~~~~~~y~e~~~~g~~v~~~----------------------~g~-~~~~~~~w~ 129 (317)
T cd06599 74 DPAAFVAKFHERGIRLAPNIKPG-LLQDHPRYKELKEAGAFIKPP----------------------DGR-EPSIGQFWG 129 (317)
T ss_pred CHHHHHHHHHHCCCEEEEEeCCc-ccCCCHHHHHHHHCCcEEEcC----------------------CCC-CcceecccC
Confidence 57799999999999999977654 3333321 0111111110 000 001111111
Q ss_pred C-CCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccC
Q 018833 94 P-APDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVK 131 (350)
Q Consensus 94 ~-~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~ 131 (350)
+ ..-+|+.||+.++...+.++..+.+.|||||=+|...
T Consensus 130 g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E 168 (317)
T cd06599 130 GVGSFVDFTNPEGREWWKEGVKEALLDLGIDSTWNDNNE 168 (317)
T ss_pred CCeEeecCCChHHHHHHHHHHHHHHhcCCCcEEEecCCC
Confidence 1 1238899999999999999544344999999999764
No 65
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=96.39 E-value=0.016 Score=53.08 Aligned_cols=87 Identities=20% Similarity=0.359 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCCCCCC--CCcccceeecCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRTAERK--DGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQ 93 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~--~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (350)
..|+++|++.||++||.+|.=+|.=- |.. ..+++|.... .....|.+..+
T Consensus 60 i~D~~~l~~~l~e~gIY~IARIv~Fk---D~~la~~~pe~av~~----------------~~G~~w~d~~~--------- 111 (316)
T PF13200_consen 60 IKDLKALVKKLKEHGIYPIARIVVFK---DPVLAEAHPEWAVKT----------------KDGSVWRDNEG--------- 111 (316)
T ss_pred ccCHHHHHHHHHHCCCEEEEEEEEec---ChHHhhhChhhEEEC----------------CCCCcccCCCC---------
Confidence 46899999999999999999998631 110 1133343311 11111222111
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCC
Q 018833 94 PAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG 132 (350)
Q Consensus 94 ~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~ 132 (350)
..=+|.-+++||+|+++..+...+ .|+|.+-+|-+..
T Consensus 112 -~~WvnP~~~evw~Y~i~IA~Eaa~-~GFdEIqfDYIRF 148 (316)
T PF13200_consen 112 -EAWVNPYSKEVWDYNIDIAKEAAK-LGFDEIQFDYIRF 148 (316)
T ss_pred -CccCCCCCHHHHHHHHHHHHHHHH-cCCCEEEeeeeec
Confidence 112778899999999999999997 9999999997644
No 66
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.37 E-value=0.0087 Score=56.42 Aligned_cols=97 Identities=15% Similarity=0.115 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCC
Q 018833 14 GSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQ 93 (350)
Q Consensus 14 Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (350)
++-+=|..+|++||+|||+|+-=+-+--++....... .....|...- ...+-+. .+..+.
T Consensus 112 ~g~DpLa~~I~~AHkr~l~v~aWf~~~~~a~~~s~~~-----------~~~p~~~~~~--~~~~~~~-------~~~~~~ 171 (418)
T COG1649 112 PGYDPLAFVIAEAHKRGLEVHAWFNPYRMAPPTSPLT-----------KRHPHWLTTK--RPGWVYV-------RHQGWG 171 (418)
T ss_pred CCCChHHHHHHHHHhcCCeeeechhhcccCCCCChhH-----------hhCCCCcccC--CCCeEEE-------ecCCce
Confidence 3457799999999999999985444433333211000 0001111000 0000000 001100
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 018833 94 PAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 130 (350)
Q Consensus 94 ~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a 130 (350)
...=||-.+|+||++|.+.+...+..|.|||+-+|--
T Consensus 172 ~~~~ldPg~Pevq~~i~~lv~evV~~YdvDGIQfDd~ 208 (418)
T COG1649 172 KRVWLDPGIPEVQDFITSLVVEVVRNYDVDGIQFDDY 208 (418)
T ss_pred eeeEeCCCChHHHHHHHHHHHHHHhCCCCCceeccee
Confidence 2233888899999999999999999999999999953
No 67
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=96.23 E-value=0.034 Score=56.51 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHCCC--EEEEEEecc
Q 018833 17 ADLKSLIQAFRQKGI--KCLADMVIN 40 (350)
Q Consensus 17 ~d~~~lv~~aH~~Gi--~VilD~V~N 40 (350)
++++++-+.|+++|| ++|-|+.+-
T Consensus 355 ~Ql~~~~~~A~~~Gm~igL~gDLpvg 380 (695)
T PRK11052 355 SQFAACWQLSQQLGMPIGLYRDLAVG 380 (695)
T ss_pred HHHHHHHHHHHHCCCceeEEEeeece
Confidence 578889999999999 679999874
No 68
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=96.18 E-value=0.016 Score=53.98 Aligned_cols=35 Identities=29% Similarity=0.412 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCC
Q 018833 98 IDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG 132 (350)
Q Consensus 98 ln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~ 132 (350)
+|+.||++++...+.++.++++.|||||=+|....
T Consensus 132 ~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~Ep 166 (339)
T cd06602 132 PDFLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNEP 166 (339)
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCCCcEEEecCCCC
Confidence 68999999999999999877778999999998654
No 69
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=96.08 E-value=0.025 Score=52.25 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=31.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCC
Q 018833 97 DIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG 132 (350)
Q Consensus 97 dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~ 132 (350)
-+|+.||++++...+.++..+.+.|||||=+|....
T Consensus 126 ~~Dftnp~a~~ww~~~~~~~~~~~gvdg~w~D~~Ep 161 (317)
T cd06600 126 YPDFTNPDTREWWAGLFSEWLNSQGVDGIWLDMNEP 161 (317)
T ss_pred ccCCCChHHHHHHHHHHHHHhhcCCCceEEeeCCCC
Confidence 379999999999999999887569999999998653
No 70
>PRK10658 putative alpha-glucosidase; Provisional
Probab=96.05 E-value=0.021 Score=57.96 Aligned_cols=90 Identities=18% Similarity=0.191 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHCCCEEEEEEeccCCCCCCCC----CcccceeecCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCC-
Q 018833 18 DLKSLIQAFRQKGIKCLADMVINHRTAERKD----GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF- 92 (350)
Q Consensus 18 d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~----~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~- 92 (350)
+.+.||+++|++|+||++=+.|. .+.+++. ....|+.... .+..+.+..|
T Consensus 326 dp~~mi~~L~~~G~k~~~~i~P~-i~~~s~~f~e~~~~gy~vk~~------------------------~G~~~~~~~W~ 380 (665)
T PRK10658 326 DPEGMLKRLKAKGLKICVWINPY-IAQKSPLFKEGKEKGYLLKRP------------------------DGSVWQWDKWQ 380 (665)
T ss_pred CHHHHHHHHHHCCCEEEEeccCC-cCCCchHHHHHHHCCeEEECC------------------------CCCEeeeeecC
Confidence 45789999999999999987663 4433321 1111221111 0000000001
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC
Q 018833 93 QPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY 133 (350)
Q Consensus 93 ~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~ 133 (350)
....-+|+.||++++...+.++.+++ .|||||-.|....+
T Consensus 381 g~~~~~Dftnp~ar~W~~~~~~~l~d-~Gvdgfw~D~gE~~ 420 (665)
T PRK10658 381 PGMAIVDFTNPDACKWYADKLKGLLD-MGVDCFKTDFGERI 420 (665)
T ss_pred CCceeecCCCHHHHHHHHHHHHHHHh-cCCcEEEecCCcee
Confidence 12233889999999999999999888 99999999975443
No 71
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.02 E-value=0.025 Score=52.25 Aligned_cols=88 Identities=20% Similarity=0.187 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHCCCEEEEEEeccCCCCCCCC----CcccceeecC--CCCCCCCCCCCCccccCCCCCCCCCCCCCCCCC
Q 018833 18 DLKSLIQAFRQKGIKCLADMVINHRTAERKD----GRGIYCIFEG--GTSDDRLDWGPSFICRGDKEYSDGQGNDDTGED 91 (350)
Q Consensus 18 d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~----~~~~~~~~~~--~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 91 (350)
+.++||+++|++|++|++=+.+- ++.+++. ....|..... +.+.....|.
T Consensus 71 dp~~mi~~L~~~G~k~~~~v~P~-v~~~~~~y~e~~~~g~l~~~~~~~~~~~~~~w~----------------------- 126 (317)
T cd06598 71 DPAGMIADLAKKGVKTIVITEPF-VLKNSKNWGEAVKAGALLKKDQGGVPTLFDFWF----------------------- 126 (317)
T ss_pred CHHHHHHHHHHcCCcEEEEEcCc-ccCCchhHHHHHhCCCEEEECCCCCEeeeeccC-----------------------
Confidence 45789999999999999988654 3333321 0011110000 0000000010
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccC
Q 018833 92 FQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVK 131 (350)
Q Consensus 92 ~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~ 131 (350)
....-+|+.||++++...+.++.+.+ .|||||=+|...
T Consensus 127 -g~~~~~Dftnp~a~~w~~~~~~~~~~-~Gvdg~w~D~~E 164 (317)
T cd06598 127 -GNTGLIDWFDPAAQAWFHDNYKKLID-QGVTGWWGDLGE 164 (317)
T ss_pred -CCccccCCCCHHHHHHHHHHHHHhhh-CCccEEEecCCC
Confidence 11123778999999999999998866 999999999864
No 72
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=95.90 E-value=0.05 Score=58.97 Aligned_cols=29 Identities=10% Similarity=0.249 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHCCCEE--EEEEeccCCCCCC
Q 018833 17 ADLKSLIQAFRQKGIKC--LADMVINHRTAER 46 (350)
Q Consensus 17 ~d~~~lv~~aH~~Gi~V--ilD~V~NH~s~~~ 46 (350)
.+++++-+.|+++||+| |-|+.+- ++.++
T Consensus 932 ~Q~~~~~~~A~~~Gm~iGl~gDLpvg-v~~ds 962 (1221)
T PRK14510 932 RQWQAAKDYAQEQGLSIGFYGDLAIG-VAPDG 962 (1221)
T ss_pred HHHHHHHHHHHHCCCEEeEEeeeeee-eCCCc
Confidence 57889999999999999 9999875 33333
No 73
>smart00632 Aamy_C Aamy_C domain.
Probab=95.57 E-value=0.037 Score=39.94 Aligned_cols=37 Identities=8% Similarity=0.082 Sum_probs=26.5
Q ss_pred cCCCEEEEEECCEEEEEeCCCCC-----C-CCcCCCCcEEEEc
Q 018833 304 SDADVYIAAIGDRVIMKIGPKMD-----I-GNLIPSDFKVAAD 340 (350)
Q Consensus 304 ~~~~~~~~~r~~~~lv~~n~~~~-----~-~~~~~~~~~~~~~ 340 (350)
.++++++|+|+++.+|+||++.. + ..++...|+++++
T Consensus 6 ~~~~~laF~Rg~~g~VaiN~~~~~~~~~~~t~lp~G~Y~d~l~ 48 (81)
T smart00632 6 NGDNQIAFERGSKGFVAINRSDSDLTITLQTSLPAGTYCDVIS 48 (81)
T ss_pred CCCeEEEEECCCeEEEEEECCCCceEEEEeecCCCcceEEEec
Confidence 34459999999999999998632 1 2333467887776
No 74
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=95.48 E-value=0.02 Score=55.53 Aligned_cols=98 Identities=20% Similarity=0.313 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHCCCEEEEEEeccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCC
Q 018833 18 DLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQ-PAP 96 (350)
Q Consensus 18 d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 96 (350)
+.++|++.+|++|++|++-+.+. ...+++ .+..+..... ..+ -..+..+....+..+. ...
T Consensus 84 d~~~~~~~l~~~G~~~~~~~~P~-v~~~~~----~~~~~~~~~~---~~~----------~v~~~~g~~~~~~~w~g~~~ 145 (441)
T PF01055_consen 84 DPKQMIDELHDQGIKVVLWVHPF-VSNDSP----DYENYDEAKE---KGY----------LVKNPDGSPYIGRVWPGKGG 145 (441)
T ss_dssp THHHHHHHHHHTT-EEEEEEESE-EETTTT----B-HHHHHHHH---TT-----------BEBCTTSSB-EEEETTEEEE
T ss_pred chHHHHHhHhhCCcEEEEEeecc-cCCCCC----cchhhhhHhh---cCc----------eeecccCCcccccccCCccc
Confidence 78999999999999999999884 433332 0000100000 000 0000000000000110 122
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC
Q 018833 97 DIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY 133 (350)
Q Consensus 97 dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~ 133 (350)
-+|+.||++++...+.++.+++.+|||||-+|.....
T Consensus 146 ~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~ 182 (441)
T PF01055_consen 146 FIDFTNPEARDWWKEQLKELLDDYGVDGWWLDFGEPS 182 (441)
T ss_dssp EB-TTSHHHHHHHHHHHHHHHTTST-SEEEEESTTTB
T ss_pred ccCCCChhHHHHHHHHHHHHHhccCCceEEeecCCcc
Confidence 3788999999999999999998679999999985433
No 75
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=95.43 E-value=0.051 Score=50.70 Aligned_cols=33 Identities=24% Similarity=0.336 Sum_probs=29.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccC
Q 018833 98 IDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVK 131 (350)
Q Consensus 98 ln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~ 131 (350)
+|+.||++++...+.++.+.+ .|||||=+|...
T Consensus 127 ~Dftnp~a~~ww~~~~~~~~~-~Gvdg~w~D~~E 159 (339)
T cd06604 127 PDFTNPKVREWWGSLYKKFVD-LGVDGIWNDMNE 159 (339)
T ss_pred cCCCChHHHHHHHHHHHHHhh-CCCceEeecCCC
Confidence 789999999999999998886 999999999763
No 76
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=95.24 E-value=0.094 Score=46.76 Aligned_cols=63 Identities=24% Similarity=0.295 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPA 95 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (350)
++.+++.|..+|++|+||++=+--+|.+...
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~------------------------------------------------- 80 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNHLGAGF------------------------------------------------- 80 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCCCCCCc-------------------------------------------------
Confidence 6899999999999999999988665543110
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecc
Q 018833 96 PDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDF 129 (350)
Q Consensus 96 ~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~ 129 (350)
....+++-++.+.+.+.-+++++|+||+=+|-
T Consensus 81 --~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD~ 112 (255)
T cd06542 81 --ANNLSDAAAKAYAKAIVDTVDKYGLDGVDFDD 112 (255)
T ss_pred --cccCCHHHHHHHHHHHHHHHHHhCCCceEEee
Confidence 01124555677777777666779999999985
No 77
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=95.07 E-value=0.17 Score=49.38 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHCCCEEEEEEecc
Q 018833 17 ADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 17 ~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
+++.++=.-|+++||.+|-|+.+.
T Consensus 210 ~Q~~~~k~~A~~~~I~i~gDLpv~ 233 (520)
T COG1640 210 RQLAALKRYANDMGIGIIGDLPVG 233 (520)
T ss_pred HHHHHHHHHHHhcCceEeecccce
Confidence 456677777888999999999876
No 78
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=94.96 E-value=0.062 Score=49.04 Aligned_cols=83 Identities=18% Similarity=0.259 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHCCCEEEEEEeccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCC
Q 018833 18 DLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPD 97 (350)
Q Consensus 18 d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 97 (350)
+.++||+++|++|+|||+-+.|.. +.+.. ...|..+.... ...... ....-
T Consensus 75 dp~~mi~~Lh~~G~k~v~~v~P~~-~~~~~--~~~y~~~~~~~-----------------~~~~~~---------~~~~~ 125 (292)
T cd06595 75 DPEKLLQDLHDRGLKVTLNLHPAD-GIRAH--EDQYPEMAKAL-----------------GVDPAT---------EGPIL 125 (292)
T ss_pred CHHHHHHHHHHCCCEEEEEeCCCc-ccCCC--cHHHHHHHHhc-----------------CCCccc---------CCeEE
Confidence 568999999999999999988753 21110 00111111000 000000 00123
Q ss_pred CCCCCHHHHHHHHHHHH-HHHHhcCCCeEEeccc
Q 018833 98 IDHLNPRVQKELSDWMN-WLKTEIGFDGWRFDFV 130 (350)
Q Consensus 98 ln~~n~~v~~~l~~~~~-~w~~~~gvDGfR~D~a 130 (350)
+|+.||+.++...+.++ .+.+ .|||||=.|..
T Consensus 126 ~D~tnp~a~~~w~~~~~~~~~~-~Gidg~W~D~~ 158 (292)
T cd06595 126 FDLTNPKFMDAYFDNVHRPLEK-QGVDFWWLDWQ 158 (292)
T ss_pred ecCCCHHHHHHHHHHHHHHHHh-cCCcEEEecCC
Confidence 68999998887766655 5555 99999999964
No 79
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=94.81 E-value=0.046 Score=51.07 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHR 42 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~ 42 (350)
.+.|+.|++.||++||+||+|+-+.-.
T Consensus 46 ~~~~~~l~~~a~~~~~~v~~Disp~~l 72 (357)
T PF05913_consen 46 LERLKELLKLAKELGMEVIADISPKVL 72 (357)
T ss_dssp HHHHHHHHHHHHHCT-EEEEEE-CCHH
T ss_pred HHHHHHHHHHHHHCCCEEEEECCHHHH
Confidence 588999999999999999999977633
No 80
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=94.71 E-value=0.072 Score=54.83 Aligned_cols=95 Identities=18% Similarity=0.193 Sum_probs=59.4
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCC----CcccceeecCCCCCCCCCCCCCccccCCCCCCCCCCC
Q 018833 10 ASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD----GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGN 85 (350)
Q Consensus 10 ~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~----~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 85 (350)
|.+|-.. ++||+..|++|||+|+=+.|.= ..+++. ....|+.- +..+.
T Consensus 317 ~~~FP~p---k~mi~~l~~~Gikl~~~i~P~i-~~d~~~~~e~~~~Gy~~k------------------------~~~g~ 368 (772)
T COG1501 317 PDRFPDP---KQMIAELHEKGIKLIVIINPYI-KQDSPLFKEAIEKGYFVK------------------------DPDGE 368 (772)
T ss_pred cccCCCH---HHHHHHHHhcCceEEEEecccc-ccCCchHHHHHHCCeEEE------------------------CCCCC
Confidence 3444444 4999999999999999888753 333321 00111111 11122
Q ss_pred CCCCCCCC-CCCCCCCCCHHHHHHHHH-HHHHHHHhcCCCeEEecccCCC
Q 018833 86 DDTGEDFQ-PAPDIDHLNPRVQKELSD-WMNWLKTEIGFDGWRFDFVKGY 133 (350)
Q Consensus 86 ~~~~~~~~-~~~dln~~n~~v~~~l~~-~~~~w~~~~gvDGfR~D~a~~~ 133 (350)
.+...++. ...=+|+.||++|+...+ ..+.+++ +|||||=.|.....
T Consensus 369 ~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d-~Gv~g~W~D~nEp~ 417 (772)
T COG1501 369 IYQADFWPGNSAFPDFTNPDAREWWASDKKKNLLD-LGVDGFWNDMNEPE 417 (772)
T ss_pred EeeecccCCcccccCCCCHHHHHHHHHHHHhHHHh-cCccEEEccCCCCc
Confidence 22222332 233478999999999994 5567888 99999999986444
No 81
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=94.65 E-value=0.091 Score=58.05 Aligned_cols=43 Identities=19% Similarity=0.310 Sum_probs=41.0
Q ss_pred CCcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCC
Q 018833 2 PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 45 (350)
Q Consensus 2 p~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~ 45 (350)
..||++|| |+|||+++|++||++||++||+||||+|+||+|.+
T Consensus 793 v~D~~~id-p~lG~~edf~~Lv~~ah~~Gi~vilDiV~NH~~~~ 835 (1693)
T PRK14507 793 IVDHSQIN-PEIGGEEGFERFCAALKAHGLGQLLDIVPNHMGVG 835 (1693)
T ss_pred CCCCCccC-cccCCHHHHHHHHHHHHHCCCEEEEEecccccCCC
Confidence 47999999 99999999999999999999999999999999964
No 82
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=94.33 E-value=0.092 Score=55.02 Aligned_cols=101 Identities=21% Similarity=0.312 Sum_probs=57.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCCCCCCCCCCC
Q 018833 7 DLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGND 86 (350)
Q Consensus 7 ~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 86 (350)
..|+.+|- +.++||+++|++|+++|+=+.+. ...+ ..|..+..+...+. | + .+..+..
T Consensus 234 TwD~~rFP---dP~~mv~~Lh~~G~kvv~iidPg-I~~d-----~gY~~y~eg~~~~~--f-----v------k~~~G~~ 291 (978)
T PLN02763 234 TFDKERFP---DPKGLADDLHSIGFKAIWMLDPG-IKAE-----EGYFVYDSGCENDV--W-----I------QTADGKP 291 (978)
T ss_pred eECcccCC---CHHHHHHHHHHCCCEEEEEEcCC-CccC-----CCCHHHHhHhhcCe--e-----E------ECCCCCe
Confidence 34434554 45899999999999998755442 2211 11222221100000 0 0 0111111
Q ss_pred CCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 018833 87 DTGEDFQPA-PDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 130 (350)
Q Consensus 87 ~~~~~~~~~-~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a 130 (350)
..+..|++. .=.|+.||+++++..+.++.+++ .|||||=+|+-
T Consensus 292 y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~d-~GVDG~W~Dmn 335 (978)
T PLN02763 292 FVGEVWPGPCVFPDFTNKKTRSWWANLVKDFVS-NGVDGIWNDMN 335 (978)
T ss_pred eEeeecCCCccccCCCCHHHHHHHHHHHHHHhc-CCCcEEEccCC
Confidence 112222211 12588999999999999998887 99999999974
No 83
>PRK10426 alpha-glucosidase; Provisional
Probab=94.24 E-value=0.17 Score=51.25 Aligned_cols=90 Identities=20% Similarity=0.177 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHCCCEEEEEEeccCCCCCCCC----CcccceeecC-CCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCC
Q 018833 18 DLKSLIQAFRQKGIKCLADMVINHRTAERKD----GRGIYCIFEG-GTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF 92 (350)
Q Consensus 18 d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~----~~~~~~~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (350)
+.++||+++|++|+||++=+.|.-. .+++. ....|+.... +++.....| .+
T Consensus 270 dp~~mi~~L~~~G~k~v~~i~P~v~-~~~~~y~e~~~~gy~vk~~~g~~~~~~~~----------------------~~- 325 (635)
T PRK10426 270 QLDSRIKQLNEEGIQFLGYINPYLA-SDGDLCEEAAEKGYLAKDADGGDYLVEFG----------------------EF- 325 (635)
T ss_pred CHHHHHHHHHHCCCEEEEEEcCccC-CCCHHHHHHHHCCcEEECCCCCEEEeEec----------------------CC-
Confidence 4689999999999999998876432 22210 0111111110 000000000 01
Q ss_pred CCCCCCCCCCHHHHHHHHHHHH-HHHHhcCCCeEEecccCCC
Q 018833 93 QPAPDIDHLNPRVQKELSDWMN-WLKTEIGFDGWRFDFVKGY 133 (350)
Q Consensus 93 ~~~~dln~~n~~v~~~l~~~~~-~w~~~~gvDGfR~D~a~~~ 133 (350)
...-+|+.||++++...+.++ .+++ .|||||=.|....+
T Consensus 326 -~~~~~Dftnp~ar~Ww~~~~~~~~~~-~Gvdg~w~D~~E~~ 365 (635)
T PRK10426 326 -YAGVVDLTNPEAYEWFKEVIKKNMIG-LGCSGWMADFGEYL 365 (635)
T ss_pred -CceeecCCCHHHHHHHHHHHHHHHhh-cCCCEEeeeCCCCC
Confidence 112378999999999999886 5555 99999999976544
No 84
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=93.94 E-value=0.072 Score=48.35 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINH 41 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH 41 (350)
.+-|++|+++||+.||+||+|+-|.-
T Consensus 48 ~~~~~ell~~Anklg~~vivDvnPsi 73 (360)
T COG3589 48 FHRFKELLKEANKLGLRVIVDVNPSI 73 (360)
T ss_pred HHHHHHHHHHHHhcCcEEEEEcCHHH
Confidence 45699999999999999999998753
No 85
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=93.85 E-value=0.22 Score=46.20 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=28.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 018833 98 IDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 130 (350)
Q Consensus 98 ln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a 130 (350)
.|+.||+++++-.+..+.+.+ .|||||=+|+.
T Consensus 101 pDftnp~ar~wW~~~~~~l~~-~Gv~~~W~Dmn 132 (332)
T cd06601 101 PDLGRPDVREWWGNQYKYLFD-IGLEFVWQDMT 132 (332)
T ss_pred eCCCCHHHHHHHHHHHHHHHh-CCCceeecCCC
Confidence 567899999998888888887 89999999975
No 86
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=93.75 E-value=0.15 Score=48.04 Aligned_cols=31 Identities=19% Similarity=0.109 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 018833 100 HLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 130 (350)
Q Consensus 100 ~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a 130 (350)
..+++.|+.+++.+.-+++++|.||+-+|-=
T Consensus 91 l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE 121 (358)
T cd02875 91 ISNPTYRTQWIQQKVELAKSQFMDGINIDIE 121 (358)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCeEEEccc
Confidence 3478899989888877777799999999963
No 87
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=93.04 E-value=0.47 Score=42.24 Aligned_cols=64 Identities=19% Similarity=0.309 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPA 95 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (350)
..++..++++||++|+||++=+- ++... .+ .
T Consensus 45 ~~~~~~~~~~~~~~~~kvl~sig-g~~~~---------------------~~------------~--------------- 75 (253)
T cd06545 45 RSELNSVVNAAHAHNVKILISLA-GGSPP---------------------EF------------T--------------- 75 (253)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEc-CCCCC---------------------cc------------h---------------
Confidence 46789999999999999998542 21100 00 0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 018833 96 PDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 130 (350)
Q Consensus 96 ~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a 130 (350)
--..++..|+.+++.+..+++++|.||+-+|--
T Consensus 76 --~~~~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE 108 (253)
T cd06545 76 --AALNDPAKRKALVDKIINYVVSYNLDGIDVDLE 108 (253)
T ss_pred --hhhcCHHHHHHHHHHHHHHHHHhCCCceeEEee
Confidence 013478889989888887777799999999964
No 88
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=92.94 E-value=0.59 Score=43.05 Aligned_cols=62 Identities=29% Similarity=0.447 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQP 94 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (350)
+.+++++.|++||++|+||++-+ +... + .
T Consensus 58 ~~~~~~~~i~~~q~~G~KVllSi-----GG~~-----------~--------------------------~--------- 86 (312)
T cd02871 58 SPAEFKADIKALQAKGKKVLISI-----GGAN-----------G--------------------------H--------- 86 (312)
T ss_pred ChHHHHHHHHHHHHCCCEEEEEE-----eCCC-----------C--------------------------c---------
Confidence 46789999999999999999875 2100 0 0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 018833 95 APDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 130 (350)
Q Consensus 95 ~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a 130 (350)
....++.-++.+.+.+.-+++++|+||+=+|-=
T Consensus 87 ---~~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E 119 (312)
T cd02871 87 ---VDLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLE 119 (312)
T ss_pred ---cccCCHHHHHHHHHHHHHHHHHhCCCeEEEecc
Confidence 113356778888888887778899999999963
No 89
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=92.56 E-value=0.39 Score=44.77 Aligned_cols=89 Identities=17% Similarity=0.090 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHCCCEEEEEEeccCCCCC-CCC----CcccceeecCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCC
Q 018833 18 DLKSLIQAFRQKGIKCLADMVINHRTAE-RKD----GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF 92 (350)
Q Consensus 18 d~~~lv~~aH~~Gi~VilD~V~NH~s~~-~~~----~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (350)
+.++||+++|++|+||++-+.+--.... ++. ....|+.... .+....+..+
T Consensus 65 dp~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~g~~vk~~------------------------~g~~~~~~~w 120 (339)
T cd06603 65 DPEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDKGYLVKNS------------------------DGGDFEGWCW 120 (339)
T ss_pred CHHHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHCCeEEECC------------------------CCCEEEEEEC
Confidence 5688999999999999999876532111 110 0011111110 0000000011
Q ss_pred -CCCCCCCCCCHHHHHHHHHHHHHHHH--hcCCCeEEeccc
Q 018833 93 -QPAPDIDHLNPRVQKELSDWMNWLKT--EIGFDGWRFDFV 130 (350)
Q Consensus 93 -~~~~dln~~n~~v~~~l~~~~~~w~~--~~gvDGfR~D~a 130 (350)
....-+|+.||++++...+.++.... ..|||||=+|..
T Consensus 121 ~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D~~ 161 (339)
T cd06603 121 PGSSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWNDMN 161 (339)
T ss_pred CCCcCCccCCChhHHHHHHHHHHHHhhcccCCCceEEeccC
Confidence 11234889999999999999998764 368999988875
No 90
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=92.43 E-value=0.59 Score=47.64 Aligned_cols=99 Identities=22% Similarity=0.320 Sum_probs=59.2
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCCCCCCCCCCC-CC
Q 018833 10 ASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGND-DT 88 (350)
Q Consensus 10 ~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~ 88 (350)
+..|++ ++++++.+|++|+|+|+=+-|+-.. +. .|..|+.+......- .+..+.. ..
T Consensus 347 ~~~fp~---~~~fv~~Lh~~G~kyvliidP~is~-~~-----~y~~y~~g~~~~v~I-------------~~~~g~~~~l 404 (805)
T KOG1065|consen 347 KVWFPD---LKDFVDDLHARGFKYVLIIDPFIST-NS-----SYGPYDRGVAKDVLI-------------KNREGSPKML 404 (805)
T ss_pred cccCcc---hHHHHHHHHhCCCeEEEEeCCcccc-Cc-----cchhhhhhhhhceee-------------ecccCchhhh
Confidence 356666 9999999999999999766644221 11 122233211111100 0000000 11
Q ss_pred CCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 018833 89 GEDFQ-PAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 130 (350)
Q Consensus 89 ~~~~~-~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a 130 (350)
+..++ ...=+|+.||++.....+.++-+-++.++|||=+|+-
T Consensus 405 g~vwP~~~~fpDftnp~~~~Ww~~~~~~fh~~vp~dg~wiDmn 447 (805)
T KOG1065|consen 405 GEVWPGSTAFPDFTNPAVVEWWLDELKRFHDEVPFDGFWIDMN 447 (805)
T ss_pred cccCCCcccccccCCchHHHHHHHHHHhhcccCCccceEEECC
Confidence 11111 1223688999999999999998888899999999983
No 91
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=92.37 E-value=0.11 Score=52.01 Aligned_cols=42 Identities=21% Similarity=0.461 Sum_probs=40.7
Q ss_pred CcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCC
Q 018833 3 GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 45 (350)
Q Consensus 3 ~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~ 45 (350)
.|+..|+ |.+|+++.|.+||.++|++||.+|+|+|||||+..
T Consensus 55 vD~t~In-PeLGG~egl~rLvaalk~~GlGlI~DIVPNHMav~ 96 (889)
T COG3280 55 VDPTEIN-PELGGEEGLERLVAALKSRGLGLIVDIVPNHMAVG 96 (889)
T ss_pred CCccccC-hhhcChHHHHHHHHHHHhcCCceEEEecccchhcc
Confidence 5889999 99999999999999999999999999999999987
No 92
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=91.74 E-value=0.87 Score=42.64 Aligned_cols=81 Identities=12% Similarity=0.173 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEE-eccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADM-VINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQ 93 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~-V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (350)
|.+|++.||+-|.+|||.||-.+ +|.|+..-.... ++ ..+.....+.... .-.
T Consensus 68 T~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~~~-p~------------------l~~~~~~~~~~~~-------~~~ 121 (348)
T cd06562 68 TPEDVKEIVEYARLRGIRVIPEIDTPGHTGSWGQGY-PE------------------LLTGCYAVWRKYC-------PEP 121 (348)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccCchhhHHHHHhC-hh------------------hhCCCCccccccc-------cCC
Confidence 89999999999999999999999 588886422100 00 0000000000000 001
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 018833 94 PAPDIDHLNPRVQKELSDWMNWLKTEIG 121 (350)
Q Consensus 94 ~~~dln~~n~~v~~~l~~~~~~w~~~~g 121 (350)
....||..+|++.+.+.+++..+++-+.
T Consensus 122 ~~~~L~~~~~~t~~fl~~vl~E~~~lF~ 149 (348)
T cd06562 122 PCGQLNPTNPKTYDFLKTLFKEVSELFP 149 (348)
T ss_pred CCccccCCChhHHHHHHHHHHHHHHhcC
Confidence 1224899999999999999998887443
No 93
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=91.71 E-value=0.43 Score=35.34 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=30.6
Q ss_pred EecCCCEEEEEECC----EEEEEeCCCCC-------CCCcCCCCcEEEEcCCceEE
Q 018833 302 LASDADVYIAAIGD----RVIMKIGPKMD-------IGNLIPSDFKVAADGTDYAV 346 (350)
Q Consensus 302 ~~~~~~~~~~~r~~----~~lv~~n~~~~-------~~~~~~~~~~~~~~~~~~~~ 346 (350)
...+++++||.|.. .+|||+|++.. ++-..++.|+++++++...+
T Consensus 5 ~d~~~~v~af~R~~~~~~~~lvv~Nf~~~~~~~~~~~~~p~~g~y~~vlnsd~~~~ 60 (95)
T PF02806_consen 5 DDNENNVIAFERKDKGDDRVLVVFNFSPEAVYEDYRIGVPEAGRYKEVLNSDDEEY 60 (95)
T ss_dssp EEESSSEEEEEETTTETTEEEEEEESSSS-EEEEEEECSSSSEEEEETTTTTCEEE
T ss_pred ccCCCCEEEEEEcCCCCCEEEEEEECCCcccceeEEeCCCCcceeeEEeCCCccEE
Confidence 34567999999932 69999998643 22222458888888765544
No 94
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=91.53 E-value=0.65 Score=42.71 Aligned_cols=78 Identities=17% Similarity=0.211 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEE-eccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADM-VINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQ 93 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~-V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (350)
|.+|++.||+-|.+|||.||-.+ +|.|+..-... .++ .. +.. ..+... .... .
T Consensus 66 T~~di~elv~yA~~rgI~vIPEId~PGH~~a~~~~-ype---l~---------------~~~-~~~~~~-----~~~~-~ 119 (311)
T cd06570 66 TQEQIREVVAYARDRGIRVVPEIDVPGHASAIAVA-YPE---LA---------------SGP-GPYVIE-----RGWG-V 119 (311)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeecCccchHHHHHh-CHH---hc---------------cCC-Cccccc-----cccc-c
Confidence 78999999999999999999998 58888532110 000 00 000 000000 0000 0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH
Q 018833 94 PAPDIDHLNPRVQKELSDWMNWLKT 118 (350)
Q Consensus 94 ~~~dln~~n~~v~~~l~~~~~~w~~ 118 (350)
..+.||..||++.+.+.+.+..+++
T Consensus 120 ~~~~l~~~~p~t~~f~~~l~~E~~~ 144 (311)
T cd06570 120 FEPLLDPTNEETYTFLDNLFGEMAE 144 (311)
T ss_pred CCCccCCCChhHHHHHHHHHHHHHH
Confidence 1124999999999999999998876
No 95
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=91.03 E-value=0.83 Score=41.93 Aligned_cols=37 Identities=19% Similarity=0.443 Sum_probs=31.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC
Q 018833 96 PDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY 133 (350)
Q Consensus 96 ~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~ 133 (350)
-.+|+++++.++.|.+.+.-+++ .|+|||-+|.+..+
T Consensus 136 ~~vd~~~~~W~~il~~rl~~l~~-kGfDGvfLD~lDsy 172 (315)
T TIGR01370 136 YDVKYWDPEWKAIAFSYLDRVIA-QGFDGVYLDLIDAF 172 (315)
T ss_pred eeEecccHHHHHHHHHHHHHHHH-cCCCeEeeccchhh
Confidence 34889999999999998887776 99999999987554
No 96
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=90.88 E-value=1.2 Score=41.91 Aligned_cols=80 Identities=13% Similarity=0.152 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEE-eccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADM-VINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQ 93 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~-V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (350)
|.+|++.+|+-|.+|||.||-.+ +|.|+..-... .++ . .+..... .+.. ....
T Consensus 84 T~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~~-~pe---l---------------~~~~~~~------~~~~-~~~~ 137 (357)
T cd06563 84 TQEEIREIVAYAAERGITVIPEIDMPGHALAALAA-YPE---L---------------GCTGGPG------SVVS-VQGV 137 (357)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCchhHHHHHHh-Ccc---c---------------cCCCCCC------cccc-ccCc
Confidence 58999999999999999999998 58887532100 000 0 0000000 0000 0011
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 018833 94 PAPDIDHLNPRVQKELSDWMNWLKTEI 120 (350)
Q Consensus 94 ~~~dln~~n~~v~~~l~~~~~~w~~~~ 120 (350)
....||..+|++.+.+.+.+..+++-+
T Consensus 138 ~~~~L~~~~~~t~~f~~~ll~E~~~lF 164 (357)
T cd06563 138 VSNVLCPGKPETYTFLEDVLDEVAELF 164 (357)
T ss_pred CCCccCCCChhHHHHHHHHHHHHHHhC
Confidence 122489999999999999988887633
No 97
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=90.87 E-value=0.55 Score=44.66 Aligned_cols=52 Identities=12% Similarity=0.282 Sum_probs=43.0
Q ss_pred CCCCCCCCCC-----CHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhc
Q 018833 92 FQPAPDIDHL-----NPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENT 145 (350)
Q Consensus 92 ~~~~~dln~~-----n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~ 145 (350)
|+++..|+|. ||.+|++|.++.+...+ -.+|||+|.++.-|...-+.+++++
T Consensus 360 WGDcVKLRYG~~peDsP~LW~~M~~Yt~~~A~--iF~G~RiDNCHSTPlhVaeylLd~A 416 (423)
T PF14701_consen 360 WGDCVKLRYGSKPEDSPFLWKHMKEYTELMAK--IFHGFRIDNCHSTPLHVAEYLLDAA 416 (423)
T ss_pred cCceeeecCCCCCCCCHHHHHHHHHHHHHHHH--hcCeeeeecCCCCcHHHHHHHHHHH
Confidence 4777778774 68999999999998876 7899999999999988777775543
No 98
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=90.67 E-value=0.36 Score=44.30 Aligned_cols=77 Identities=19% Similarity=0.207 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEE-eccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADM-VINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQ 93 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~-V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (350)
|.+|+++||+-|.+|||.||-.+ +|.|++.-.... ++ .. . .|.....+. .
T Consensus 70 T~~di~elv~yA~~rgI~viPEiD~PGH~~a~~~~~-p~---l~------~-------~~~~~~~~~------------~ 120 (303)
T cd02742 70 TYAQLKDIIEYAAARGIEVIPEIDMPGHSTAFVKSF-PK---LL------T-------ECYAGLKLR------------D 120 (303)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccchHHHHHHHHhC-HH---hc------c-------CccccCCCC------------C
Confidence 68999999999999999999998 588885321100 00 00 0 000000000 0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 018833 94 PAPDIDHLNPRVQKELSDWMNWLKTEI 120 (350)
Q Consensus 94 ~~~dln~~n~~v~~~l~~~~~~w~~~~ 120 (350)
....||..+|++.+.+.+.+..+++-+
T Consensus 121 ~~~~l~~~~~~t~~fl~~l~~e~~~lf 147 (303)
T cd02742 121 VFDPLDPTLPKGYDFLDDLFGEIAELF 147 (303)
T ss_pred CCCccCCCCccHHHHHHHHHHHHHHhC
Confidence 112489999999999999999888733
No 99
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=90.36 E-value=0.62 Score=43.23 Aligned_cols=75 Identities=16% Similarity=0.203 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEE-eccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADM-VINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQ 93 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~-V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (350)
|.+|++.+|+-|.+|||.||-.+ +|.|+..-... .+...+... ....
T Consensus 80 T~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~~-------------------~pel~~~~~-------------~~~~ 127 (326)
T cd06564 80 TKEEFKELIAYAKDRGVNIIPEIDSPGHSLAFTKA-------------------MPELGLKNP-------------FSKY 127 (326)
T ss_pred cHHHHHHHHHHHHHcCCeEeccCCCcHHHHHHHHh-------------------hHHhcCCCc-------------ccCC
Confidence 79999999999999999999888 57887532110 000000000 0111
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 018833 94 PAPDIDHLNPRVQKELSDWMNWLKTEIG 121 (350)
Q Consensus 94 ~~~dln~~n~~v~~~l~~~~~~w~~~~g 121 (350)
....||..+|++.+.+.+.+..+++-+.
T Consensus 128 ~~~~l~~~~~~t~~f~~~l~~E~~~~f~ 155 (326)
T cd06564 128 DKDTLDISNPEAVKFVKALFDEYLDGFN 155 (326)
T ss_pred CcccccCCCHHHHHHHHHHHHHHHHhcC
Confidence 2234899999999999999999888565
No 100
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=89.97 E-value=0.81 Score=41.07 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHCCCEEEEEEec
Q 018833 18 DLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 18 d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
+.++||+.+|++|++|++-+.+
T Consensus 67 dp~~~i~~l~~~g~~~~~~~~P 88 (265)
T cd06589 67 NPKSMIDELHDNGVKLVLWIDP 88 (265)
T ss_pred CHHHHHHHHHHCCCEEEEEeCh
Confidence 3688999999999999996644
No 101
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=89.61 E-value=1.5 Score=40.79 Aligned_cols=80 Identities=14% Similarity=0.072 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEE-eccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADM-VINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQ 93 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~-V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (350)
|.+|+++||+-|.+|||.||-.+ +|.|+..--.. .++ ... ..+. ..... ..-.
T Consensus 73 T~~di~elv~yA~~rgI~vIPEiD~PGH~~a~~~~-~p~---l~~------~~~~--------~~~~~--------~~~~ 126 (329)
T cd06568 73 TQEDYKDIVAYAAERHITVVPEIDMPGHTNAALAA-YPE---LNC------DGKA--------KPLYT--------GIEV 126 (329)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCcHHHHHHHHh-Chh---hcc------CCCC--------Ccccc--------ccCC
Confidence 79999999999999999999888 47887531100 000 000 0000 00000 0001
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 018833 94 PAPDIDHLNPRVQKELSDWMNWLKTEI 120 (350)
Q Consensus 94 ~~~dln~~n~~v~~~l~~~~~~w~~~~ 120 (350)
....||..+|++.+.+.+.+..+++-+
T Consensus 127 ~~~~l~~~~~~t~~fl~~v~~E~~~~f 153 (329)
T cd06568 127 GFSSLDVDKPTTYEFVDDVFRELAALT 153 (329)
T ss_pred CCcccCCCCHHHHHHHHHHHHHHHHhC
Confidence 123589999999999999999888733
No 102
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=87.88 E-value=1.2 Score=45.60 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHCCCEEEEEEeccCCCCCC
Q 018833 17 ADLKSLIQAFRQKGIKCLADMVINHRTAER 46 (350)
Q Consensus 17 ~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~ 46 (350)
.+++++-+.|+++||+++-|+.+- ++.++
T Consensus 274 ~Q~~~~~~yA~~~GI~L~GDLPIg-Va~dS 302 (745)
T PLN03236 274 RQLRRAAAHAAAKGVILKGDLPIG-VDKAS 302 (745)
T ss_pred HHHHHHHHHHHHCCCEEEEEeece-eCCCc
Confidence 578889999999999999999985 44444
No 103
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=86.69 E-value=0.78 Score=41.07 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
.+.|+++|++|+++||+||||+--.
T Consensus 61 ~~~ld~~v~~a~~~gi~vild~h~~ 85 (281)
T PF00150_consen 61 LARLDRIVDAAQAYGIYVILDLHNA 85 (281)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEES
T ss_pred HHHHHHHHHHHHhCCCeEEEEeccC
Confidence 6899999999999999999998654
No 104
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=86.55 E-value=0.43 Score=48.99 Aligned_cols=43 Identities=21% Similarity=0.446 Sum_probs=35.2
Q ss_pred cccCCCCCCCC------CHHHHHHHHHHHHH-CCCEEEEEEeccCCCCCCC
Q 018833 4 RLYDLDASKYG------SQADLKSLIQAFRQ-KGIKCLADMVINHRTAERK 47 (350)
Q Consensus 4 d~~~id~~~~G------t~~d~~~lv~~aH~-~Gi~VilD~V~NH~s~~~~ 47 (350)
|..+++ +.+- +.||.++||+.||+ -+|--|-|+|+|||+..++
T Consensus 178 dql~~~-~~~~~~~~k~s~eDV~~lV~~l~rewnvlsi~DvV~NHtAnns~ 227 (1521)
T KOG3625|consen 178 DQLELN-PDFSRPNRKYSFEDVGQLVEKLKREWNVLSITDVVYNHTANNSK 227 (1521)
T ss_pred hhhhcC-hhhhccCCCCCHHHHHHHHHHHHhhcCeeeeehhhhhccccCCc
Confidence 344555 5544 78999999999986 6999999999999999886
No 105
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=86.34 E-value=9.9 Score=33.98 Aligned_cols=36 Identities=25% Similarity=0.520 Sum_probs=32.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC
Q 018833 97 DIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY 133 (350)
Q Consensus 97 dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~ 133 (350)
...|+.|+-++.+.+.+..+++ .|+||.-+|.+...
T Consensus 116 ~VkYW~~eWkdii~~~l~rL~d-~GfdGvyLD~VD~y 151 (300)
T COG2342 116 AVKYWEPEWKDIIRSYLDRLID-QGFDGVYLDVVDAY 151 (300)
T ss_pred eeeccCHHHHHHHHHHHHHHHH-ccCceEEEeeechH
Confidence 4788999999999999999998 99999999998665
No 106
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=85.80 E-value=2.1 Score=39.64 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEEeccCC
Q 018833 13 YGSQADLKSLIQAFRQKGIKCLADMVINHR 42 (350)
Q Consensus 13 ~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~ 42 (350)
+-+++...++.++|++.||+|+||+=+..+
T Consensus 54 ~~~~~~~~~~akrak~~Gm~vlldfHYSD~ 83 (332)
T PF07745_consen 54 YNDLEDVIALAKRAKAAGMKVLLDFHYSDF 83 (332)
T ss_dssp TTSHHHHHHHHHHHHHTT-EEEEEE-SSSS
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEeecccCC
Confidence 345899999999999999999999976544
No 107
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=85.56 E-value=0.95 Score=42.27 Aligned_cols=93 Identities=15% Similarity=0.223 Sum_probs=51.7
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEE-eccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCC
Q 018833 13 YGSQADLKSLIQAFRQKGIKCLADM-VINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGED 91 (350)
Q Consensus 13 ~Gt~~d~~~lv~~aH~~Gi~VilD~-V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 91 (350)
+=|.+|+++||+.|+++||+||-.+ +|.|++.-... .++ .... .|.... .+.. ....
T Consensus 69 ~yT~~di~~lv~yA~~~gI~VIPeid~PGH~~~~l~~-~p~---~~~~------~~~~~~------~~~~------~~~~ 126 (351)
T PF00728_consen 69 YYTKEDIRELVAYAKERGIEVIPEIDTPGHAEAWLKA-YPE---LGCS------AWPEDK------SWPN------STCW 126 (351)
T ss_dssp EBEHHHHHHHHHHHHHTT-EEEEEEEESSS-HHHHHH-HHH---HCCC------HTTCSS------SCEE------EETT
T ss_pred cCCHHHHHHHHHHHHHcCCceeeeccCchHHHHHHHh-Cch---hhcc------cccccc------cccc------cccc
Confidence 3368999999999999999999999 58888632110 000 0000 000000 0000 0000
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEe
Q 018833 92 FQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRF 127 (350)
Q Consensus 92 ~~~~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~ 127 (350)
......||..+|++.+.+.+.+..+++-+.-.-|-+
T Consensus 127 ~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~~~~iHi 162 (351)
T PF00728_consen 127 YPDNGVLDPSNPETYEFLKDLLDEVADLFPSKYIHI 162 (351)
T ss_dssp SEEEEEE-TTSHHHHHHHHHHHHHHHHHHTSSEEEE
T ss_pred CCCcccCCCCcHHHHHHHHHHHHHHHhhCCCCeEEe
Confidence 011123899999999999999998887566444433
No 108
>PLN02950 4-alpha-glucanotransferase
Probab=84.32 E-value=2.6 Score=44.58 Aligned_cols=29 Identities=21% Similarity=0.278 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHCCCEEEEEEeccCCCCCC
Q 018833 17 ADLKSLIQAFRQKGIKCLADMVINHRTAER 46 (350)
Q Consensus 17 ~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~ 46 (350)
.+++++.+.|+++||+++.|+.+- ++.++
T Consensus 461 ~Ql~~~~~yA~~~Gi~L~GDLpig-V~~dS 489 (909)
T PLN02950 461 SQLSEAAEYARKKGVVLKGDLPIG-VDRNS 489 (909)
T ss_pred HHHHHHHHHHHHCCCEEEEEeece-eCCCc
Confidence 578899999999999999999975 44444
No 109
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=84.06 E-value=2.8 Score=38.34 Aligned_cols=73 Identities=10% Similarity=0.139 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEE-eccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADM-VINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQ 93 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~-V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (350)
|.+|++++++-|.++||.||-.+ +|.|+..--.. +.+. .. +. .. .
T Consensus 58 T~~ei~ei~~yA~~~gI~vIPeid~pGH~~~~l~~--~~~~---------~l-------~~----~~------------~ 103 (301)
T cd06565 58 TKEEIREIDDYAAELGIEVIPLIQTLGHLEFILKH--PEFR---------HL-------RE----VD------------D 103 (301)
T ss_pred CHHHHHHHHHHHHHcCCEEEecCCCHHHHHHHHhC--cccc---------cc-------cc----cC------------C
Confidence 68999999999999999999776 47777421100 0000 00 00 00 0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 018833 94 PAPDIDHLNPRVQKELSDWMNWLKTEIG 121 (350)
Q Consensus 94 ~~~dln~~n~~v~~~l~~~~~~w~~~~g 121 (350)
....||..+|++.+.+.+.+..+++-+.
T Consensus 104 ~~~~l~~~~~~t~~fi~~li~ev~~~f~ 131 (301)
T cd06565 104 PPQTLCPGEPKTYDFIEEMIRQVLELHP 131 (301)
T ss_pred CCCccCCCChhHHHHHHHHHHHHHHhCC
Confidence 0123899999999999999998887443
No 110
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=83.67 E-value=2.5 Score=40.95 Aligned_cols=30 Identities=20% Similarity=0.399 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEE-eccCCCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADM-VINHRTA 44 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~-V~NH~s~ 44 (350)
|.+|++.||+-|++|||.||-.+ +|.|+..
T Consensus 95 T~~di~eiv~yA~~rgI~VIPEID~PGH~~a 125 (445)
T cd06569 95 SRADYIEILKYAKARHIEVIPEIDMPGHARA 125 (445)
T ss_pred CHHHHHHHHHHHHHcCCEEEEccCCchhHHH
Confidence 79999999999999999999888 5888763
No 111
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=83.62 E-value=25 Score=33.39 Aligned_cols=28 Identities=11% Similarity=0.111 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCC-CCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHR-TAE 45 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~-s~~ 45 (350)
.+.||++++++|++|-++++= ++|. +..
T Consensus 82 i~~~k~l~davh~~G~~i~~Q--L~H~~Gr~ 110 (382)
T cd02931 82 IRTAKEMTERVHAYGTKIFLQ--LTAGFGRV 110 (382)
T ss_pred hHHHHHHHHHHHHcCCEEEEE--ccCcCCCc
Confidence 467999999999999999854 4686 543
No 112
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=83.16 E-value=16 Score=34.14 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCCCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRTAER 46 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~ 46 (350)
.+.||++++++|++|-++++=+ +|.+...
T Consensus 79 i~~~k~l~~~vh~~Ga~i~~QL--~H~G~~~ 107 (341)
T PF00724_consen 79 IPGLKKLADAVHAHGAKIIAQL--WHAGRQA 107 (341)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEE--E--GGGS
T ss_pred HHHHHHHHHHHHhcCccceeec--ccccccc
Confidence 6799999999999999999876 6776544
No 113
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=82.35 E-value=5.2 Score=36.73 Aligned_cols=31 Identities=29% Similarity=0.500 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEecccC
Q 018833 101 LNPRVQKELSDWMNWLKTEIGFDGWRFDFVK 131 (350)
Q Consensus 101 ~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~ 131 (350)
.++..|+.+++.+..+++++|.||+-+|--.
T Consensus 83 ~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~ 113 (313)
T cd02874 83 SNPEARQRLINNILALAKKYGYDGVNIDFEN 113 (313)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCcEEEeccc
Confidence 4788899888888877777999999999743
No 114
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=81.73 E-value=27 Score=32.69 Aligned_cols=29 Identities=31% Similarity=0.418 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCCCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRTAER 46 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~ 46 (350)
.+.+|++++++|++|-+++ +-++|.+...
T Consensus 77 i~~~~~l~~~vh~~G~~i~--~QL~h~G~~~ 105 (353)
T cd04735 77 IPGLRKLAQAIKSKGAKAI--LQIFHAGRMA 105 (353)
T ss_pred hHHHHHHHHHHHhCCCeEE--EEecCCCCCC
Confidence 6899999999999999988 6678987653
No 115
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=80.63 E-value=10 Score=32.17 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEecccC
Q 018833 101 LNPRVQKELSDWMNWLKTEIGFDGWRFDFVK 131 (350)
Q Consensus 101 ~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~ 131 (350)
.++..++.+++.+..+++++|+||+-+|--.
T Consensus 84 ~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~ 114 (210)
T cd00598 84 SDPASRAAFANSLVSFLKTYGFDGVDIDWEY 114 (210)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCceEEeeeC
Confidence 4677888888888877778999999999643
No 116
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=80.52 E-value=40 Score=31.82 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRTAE 45 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~ 45 (350)
.+.+++|++++|++|-++++=+. |.+..
T Consensus 82 i~~~~~l~~~vh~~G~~i~~QL~--H~G~~ 109 (370)
T cd02929 82 IRNLAAMTDAVHKHGALAGIELW--HGGAH 109 (370)
T ss_pred HHHHHHHHHHHHHCCCeEEEecc--cCCCC
Confidence 68999999999999999987765 88754
No 117
>PF09260 DUF1966: Domain of unknown function (DUF1966); InterPro: IPR015340 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This domain is found in various fungal alpha-amylase proteins. Its exact function has not, as yet, been defined []. ; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0016052 carbohydrate catabolic process; PDB: 2AAA_A 2GUY_A 2TAA_B 6TAA_A 2GVY_B 7TAA_A 3KWX_A.
Probab=78.85 E-value=4.5 Score=29.84 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=17.2
Q ss_pred EecCCCEEEEEE---CCEEEEEeCCC
Q 018833 302 LASDADVYIAAI---GDRVIMKIGPK 324 (350)
Q Consensus 302 ~~~~~~~~~~~r---~~~~lv~~n~~ 324 (350)
++.+++.+|++| +.++|++++|.
T Consensus 2 iy~d~~~~a~rKG~~g~qvi~vltN~ 27 (91)
T PF09260_consen 2 IYSDDSTIAFRKGPDGSQVIVVLTNQ 27 (91)
T ss_dssp EEEETTEEEEEESSTTT-EEEEEE-S
T ss_pred eEECCcEEEEEeCCCCCEEEEEEeCC
Confidence 577889999999 46888888874
No 118
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=76.99 E-value=2.6 Score=39.23 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEecccCCC
Q 018833 103 PRVQKELSDWMNWLKTEIGFDGWRFDFVKGY 133 (350)
Q Consensus 103 ~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~ 133 (350)
++.+..+++.|..+++.+|+||+-+|.=...
T Consensus 85 ~~~~~~~a~kLv~lak~yGfDGw~iN~E~~~ 115 (339)
T cd06547 85 EDGSFPVADKLVEVAKYYGFDGWLINIETEL 115 (339)
T ss_pred cccchHHHHHHHHHHHHhCCCceEeeeeccC
Confidence 4455667777777777799999999975555
No 119
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=76.86 E-value=57 Score=30.42 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCCCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRTAER 46 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~ 46 (350)
.+.+++|++++|++|-++++ -++|.+...
T Consensus 76 i~~~~~l~~~vh~~g~~~~~--Ql~H~G~~~ 104 (343)
T cd04734 76 IPGFRRLAEAVHAHGAVIMI--QLTHLGRRG 104 (343)
T ss_pred HHHHHHHHHHHHhcCCeEEE--eccCCCcCc
Confidence 47899999999999999988 678877543
No 120
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=76.77 E-value=10 Score=34.20 Aligned_cols=94 Identities=20% Similarity=0.411 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHCCCEEEEEEeccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCCCCCCCCC-CCCCCCCCCCC
Q 018833 17 ADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQG-NDDTGEDFQPA 95 (350)
Q Consensus 17 ~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 95 (350)
-|.+.+|+.|+++||.+|.-+|.=.-+.-..+....-..+.++ ..|... .++.- -+..+..|
T Consensus 124 ~Di~~~iKkaKe~giY~IARiVvFKD~~l~~~n~fk~av~~~g-----Kpw~~~---------~ngaLrKe~~~ehW--- 186 (400)
T COG1306 124 KDIEPVIKKAKENGIYAIARIVVFKDTILAKENPFKIAVYKDG-----KPWKAF---------TNGALRKESDGEHW--- 186 (400)
T ss_pred cccHHHHHHHHhcCeEEEEEEEEeeeeeEEeecCceEEEEcCC-----Ccchhh---------hcccccccccceee---
Confidence 4788999999999999999998743221100000000001111 112111 11000 00111111
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 018833 96 PDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 130 (350)
Q Consensus 96 ~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a 130 (350)
.+.-++.+|+|=+.+.+.-++ +|+|-+.+|-+
T Consensus 187 --Vd~y~~~~WeYNvtIAKEa~~-fGfdEiQFDYI 218 (400)
T COG1306 187 --VDAYDKNLWEYNVTIAKEAAK-FGFDEIQFDYI 218 (400)
T ss_pred --ecccchhhhhhhHHHHHHHHH-cCccceeeeEE
Confidence 344589999999999999988 99999988865
No 121
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=76.54 E-value=53 Score=30.95 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRTAE 45 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~ 45 (350)
.+.|+++++++|+.|=++++= ++|.+..
T Consensus 82 i~~~~~vt~avH~~G~~i~iQ--L~H~Gr~ 109 (363)
T COG1902 82 IPGLKRLTEAVHAHGAKIFIQ--LWHAGRK 109 (363)
T ss_pred hHHHHHHHHHHHhcCCeEEEE--eccCccc
Confidence 578999999999999999875 5888854
No 122
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=76.24 E-value=21 Score=31.77 Aligned_cols=31 Identities=13% Similarity=0.145 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEecccCC
Q 018833 102 NPRVQKELSDWMNWLKTEIGFDGWRFDFVKG 132 (350)
Q Consensus 102 n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~ 132 (350)
+++-++.+.+.+.-+++++|+||+=+|-=..
T Consensus 93 ~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p 123 (256)
T cd06546 93 DDEDFERYYGQLRDMIRRRGLDGLDLDVEEP 123 (256)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCceEEeeecC
Confidence 4555666666666666679999999996543
No 123
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=75.28 E-value=48 Score=30.79 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRTAE 45 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~ 45 (350)
.+.|++|++++|++|-++++=+ +|.+..
T Consensus 81 i~~~~~l~~~vh~~G~~~~~Ql--~h~G~~ 108 (338)
T cd04733 81 LEAFREWAAAAKANGALIWAQL--NHPGRQ 108 (338)
T ss_pred HHHHHHHHHHHHhcCCEEEEEc--cCCCcC
Confidence 6889999999999999988765 687754
No 124
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=74.46 E-value=3 Score=37.94 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEe
Q 018833 16 QADLKSLIQAFRQKGIKCLADMV 38 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V 38 (350)
+++++++.+-||++||+|.||-.
T Consensus 144 ~~el~ai~~~a~~~gl~lhmDGA 166 (290)
T PF01212_consen 144 LEELRAISELAREHGLPLHMDGA 166 (290)
T ss_dssp HHHHHHHHHHHHHHT-EEEEEET
T ss_pred HHHHHHHHHHHHhCceEEEEehh
Confidence 89999999999999999999974
No 125
>PF11852 DUF3372: Domain of unknown function (DUF3372); InterPro: IPR024561 This entry represents the uncharacterised C-terminal domain of secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyse alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. ; PDB: 2Y4S_A 2FH8_A 2FH6_A 2Y5E_A 2FHC_A 2FHB_A 2FHF_A 2FGZ_A.
Probab=74.42 E-value=2.3 Score=35.09 Aligned_cols=49 Identities=10% Similarity=0.194 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHhcCccCCcce-------EEEec----CCCEEEEEE-C------------CEEEEEeCCCC
Q 018833 277 LKEAISKLAAVRNRNGINTASRV-------NILAS----DADVYIAAI-G------------DRVIMKIGPKM 325 (350)
Q Consensus 277 l~~~~~~L~~lR~~~~~l~~g~~-------~~~~~----~~~~~~~~r-~------------~~~lv~~n~~~ 325 (350)
..+++++|++||+.+|.++-++- ...-. -+.++++.. + +.++|++|.+.
T Consensus 43 a~~~f~elL~iR~SspLFrL~ta~~I~~rv~F~n~G~~q~pGvIvM~idDg~~~~~dlD~~~~~iVVvfNat~ 115 (168)
T PF11852_consen 43 ASAYFQELLRIRKSSPLFRLGTAEEIQQRVTFHNTGPDQTPGVIVMSIDDGAGVGADLDPNYDGIVVVFNATP 115 (168)
T ss_dssp HHHHHHHHHHHHCT-GGGG--SHHHHHHHEEEES-STT--TTEEEEEEE-SCSSSS-S-SSEEEEEEEEE-SS
T ss_pred HHHHHHHHHHHhccCccccCCCHHHHHHhccccCCCCCCCCcEEEEEecCCCccccccCCccCeEEEEEeCCC
Confidence 37899999999999998864432 22222 257888875 2 36899999874
No 126
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=74.11 E-value=6.1 Score=37.84 Aligned_cols=53 Identities=15% Similarity=0.225 Sum_probs=40.4
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEe--ccCCCCCCCCCcccceeecCC
Q 018833 6 YDLDASKYGSQADLKSLIQAFRQKGIKCLADMV--INHRTAERKDGRGIYCIFEGG 59 (350)
Q Consensus 6 ~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V--~NH~s~~~~~~~~~~~~~~~~ 59 (350)
..+. ...|+..+++++++.||++|..|++|.+ .-|.--+-.....+++.|.+.
T Consensus 169 s~vS-n~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~idv~~l~~Df~afsgH 223 (405)
T COG0520 169 SHVS-NVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQELGCDFLAFSGH 223 (405)
T ss_pred ECcc-ccccccchHHHHHHHHHHcCCEEEEECccccCccCCCchhcCCCEEEEccc
Confidence 3455 7899999999999999999999999997 555554444445666666653
No 127
>PRK15452 putative protease; Provisional
Probab=73.53 E-value=16 Score=35.51 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
+.+++++.|+.||++|.+|.+ .+|
T Consensus 44 ~~edl~eav~~ah~~g~kvyv--t~n 67 (443)
T PRK15452 44 NHENLALGINEAHALGKKFYV--VVN 67 (443)
T ss_pred CHHHHHHHHHHHHHcCCEEEE--Eec
Confidence 468999999999999999987 445
No 128
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=73.47 E-value=75 Score=29.96 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRTAE 45 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~ 45 (350)
.+.|+++++++|++|=++++=+ +|.+..
T Consensus 77 i~~~~~l~d~vh~~Ga~i~~QL--~H~Gr~ 104 (361)
T cd04747 77 LAGWKKVVDEVHAAGGKIAPQL--WHVGAM 104 (361)
T ss_pred HHHHHHHHHHHHhcCCEEEEec--cCCCCC
Confidence 5889999999999999988765 787754
No 129
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=73.04 E-value=4.7 Score=28.75 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=17.5
Q ss_pred ecCCCEEEEEE---CCEEEEEeCCCC
Q 018833 303 ASDADVYIAAI---GDRVIMKIGPKM 325 (350)
Q Consensus 303 ~~~~~~~~~~r---~~~~lv~~n~~~ 325 (350)
...+++|+|.| ++.++|++|++.
T Consensus 6 ~P~~gvYvYfR~~~~~tVmVilN~n~ 31 (78)
T PF10438_consen 6 APQDGVYVYFRYYDGKTVMVILNKND 31 (78)
T ss_dssp --BTTEEEEEEEESSEEEEEEEE-SS
T ss_pred CccCCEEEEEEEcCCCEEEEEEcCCC
Confidence 34678999999 789999999964
No 130
>PLN02411 12-oxophytodienoate reductase
Probab=71.56 E-value=96 Score=29.58 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCCCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRTAER 46 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~ 46 (350)
.+.+++|++++|++|-++++=+ +|.+...
T Consensus 86 i~~~~~l~~avH~~G~~i~~QL--~H~Gr~~ 114 (391)
T PLN02411 86 VEAWKKVVDAVHAKGSIIFCQL--WHVGRAS 114 (391)
T ss_pred HHHHHHHHHHHHhcCCEEEEec--cCCCCCC
Confidence 5789999999999999998765 6887653
No 131
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=70.22 E-value=18 Score=32.78 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHCCCEEEEE
Q 018833 17 ADLKSLIQAFRQKGIKCLAD 36 (350)
Q Consensus 17 ~d~~~lv~~aH~~Gi~VilD 36 (350)
.++.+-|+.|+++|+||+|-
T Consensus 59 ~~~~~dI~~cq~~G~KVlLS 78 (280)
T cd02877 59 PQLGADIKHCQSKGKKVLLS 78 (280)
T ss_pred hhHHHHHHHHHHCCCEEEEE
Confidence 58999999999999999994
No 132
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=70.16 E-value=49 Score=31.18 Aligned_cols=29 Identities=14% Similarity=0.076 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCCCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRTAER 46 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~ 46 (350)
.+.|+++++++|++|-++++ -++|.+...
T Consensus 78 i~~~~~lad~vH~~Ga~i~~--QL~H~Gr~~ 106 (362)
T PRK10605 78 IAAWKKITAGVHAEGGHIAV--QLWHTGRIS 106 (362)
T ss_pred HHHHHHHHHHHHhCCCEEEE--eccCCCCCC
Confidence 57899999999999999998 567988654
No 133
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=69.86 E-value=26 Score=32.74 Aligned_cols=51 Identities=16% Similarity=0.098 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEecccCCCCHH-----HHHHHHHhcCCCcEEEeec
Q 018833 105 VQKELSDWMNWLKTEIGFDGWRFDFVKGYAPS-----ITKVYMENTSPDFAVGEKW 155 (350)
Q Consensus 105 v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~-----~~~~~~~~~~p~~~~~E~~ 155 (350)
+.++...-++.+++.|.+|.+=+|....-+.+ -+...+++..|..++.--+
T Consensus 190 ~~~~~~~ql~EL~~~Y~~d~lWfDg~~~~~~~~~~~~~~~~~i~~~qp~~ii~~r~ 245 (346)
T PF01120_consen 190 YNEYWLAQLRELLTRYKPDILWFDGGWPDPDEDWDSAELYNWIRKLQPDVIINNRW 245 (346)
T ss_dssp HHHHHHHHHHHHHHCSTESEEEEESTTSCCCTHHHHHHHHHHHHHHSTTSEEECCC
T ss_pred hhhhhHHHHHHHHhCCCcceEEecCCCCccccccCHHHHHHHHHHhCCeEEEeccc
Confidence 45577788899998899999999988653221 2223366667855444433
No 134
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=68.99 E-value=24 Score=31.67 Aligned_cols=58 Identities=16% Similarity=0.265 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQP 94 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (350)
+.+.+.+-|..|++|||+|..=+.++=.
T Consensus 166 d~~~y~dav~r~rkrgIkvc~HiI~GLP---------------------------------------------------- 193 (312)
T COG1242 166 DFACYVDAVKRLRKRGIKVCTHLINGLP---------------------------------------------------- 193 (312)
T ss_pred chHHHHHHHHHHHHcCCeEEEEEeeCCC----------------------------------------------------
Confidence 4578899999999999999876665411
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC
Q 018833 95 APDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY 133 (350)
Q Consensus 95 ~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~ 133 (350)
-+.++.+.+.++...+ .||||+-+-.-+-+
T Consensus 194 --------gE~~~~mleTak~v~~-~~v~GIKlH~Lhvv 223 (312)
T COG1242 194 --------GETRDEMLETAKIVAE-LGVDGIKLHPLHVV 223 (312)
T ss_pred --------CCCHHHHHHHHHHHHh-cCCceEEEEEEEEe
Confidence 1245789999998777 99999988754333
No 135
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=68.86 E-value=20 Score=32.86 Aligned_cols=56 Identities=18% Similarity=0.205 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPA 95 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (350)
+++|++||++|++.|++.+.=+-|-..
T Consensus 55 l~~l~~L~~~a~~~~V~Fv~aisPg~~----------------------------------------------------- 81 (306)
T PF07555_consen 55 LAELKELADAAKANGVDFVYAISPGLD----------------------------------------------------- 81 (306)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEBGTTT-----------------------------------------------------
T ss_pred HHHHHHHHHHHHHcCCEEEEEECcccc-----------------------------------------------------
Confidence 689999999999999998876655311
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEe
Q 018833 96 PDIDHLNPRVQKELSDWMNWLKTEIGFDGWRF 127 (350)
Q Consensus 96 ~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~ 127 (350)
+++.+++..+.|+.-+.-+.+ .||+-|-+
T Consensus 82 --~~~s~~~d~~~L~~K~~ql~~-lGvr~Fai 110 (306)
T PF07555_consen 82 --ICYSSEEDFEALKAKFDQLYD-LGVRSFAI 110 (306)
T ss_dssp ----TSHHHHHHHHHHHHHHHHC-TT--EEEE
T ss_pred --cccCcHHHHHHHHHHHHHHHh-cCCCEEEE
Confidence 334467888888888888887 99998865
No 136
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=68.52 E-value=29 Score=33.62 Aligned_cols=30 Identities=20% Similarity=0.481 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEE-eccCCCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADM-VINHRTA 44 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~-V~NH~s~ 44 (350)
|.+|.+..|+-|.-|||+|+-++ +|.|++.
T Consensus 248 T~eDv~evV~yarlRGIRVlpEfD~PgHt~s 278 (542)
T KOG2499|consen 248 TREDVSEVVEYARLRGIRVLPEFDTPGHTGS 278 (542)
T ss_pred cHHHHHHHHHHHHhccceeeecccCCccccc
Confidence 58999999999999999999998 5889874
No 137
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=67.22 E-value=24 Score=36.15 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=29.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCeEEecc
Q 018833 98 IDHLNPRVQKELSDWMNWLKTEIGFDGWRFDF 129 (350)
Q Consensus 98 ln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~ 129 (350)
|+..+|+||+.|.++...+...+.|||+-+|-
T Consensus 435 l~P~~pe~r~~i~~i~~dla~~~~~dGilf~D 466 (671)
T PRK14582 435 LSPFDDRVRAQVGMLYEDLAGHAAFDGILFHD 466 (671)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCceEEecc
Confidence 88899999999999999999978999999874
No 138
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=67.17 E-value=9.6 Score=34.43 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEec
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
.+...++-++|..+||||++|+-+
T Consensus 103 ~~k~ieiakRAk~~GmKVl~dFHY 126 (403)
T COG3867 103 LKKAIEIAKRAKNLGMKVLLDFHY 126 (403)
T ss_pred HHHHHHHHHHHHhcCcEEEeeccc
Confidence 344455667899999999999854
No 139
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=65.56 E-value=52 Score=30.67 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRTAE 45 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~ 45 (350)
.+.++++++++|++|-++++=+ +|.+..
T Consensus 80 i~~~r~l~d~vh~~G~~i~~QL--~H~G~~ 107 (337)
T PRK13523 80 IEGLHKLVTFIHDHGAKAAIQL--AHAGRK 107 (337)
T ss_pred HHHHHHHHHHHHhcCCEEEEEc--cCCCCC
Confidence 5899999999999999988765 777654
No 140
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=64.46 E-value=5.6 Score=36.12 Aligned_cols=28 Identities=21% Similarity=0.500 Sum_probs=25.3
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEe
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMV 38 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V 38 (350)
...|...+++++++.||++|+.||+|-+
T Consensus 164 ~~~G~~~dl~~I~~~~~~~g~~livDeA 191 (294)
T cd00615 164 TYYGICYNLRKIVEEAHHRGLPVLVDEA 191 (294)
T ss_pred CCCCEecCHHHHHHHHHhcCCeEEEECc
Confidence 3468888999999999999999999987
No 141
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=64.35 E-value=6.3 Score=34.61 Aligned_cols=25 Identities=8% Similarity=0.356 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
.+++++++++||+.||+||+...+.
T Consensus 111 ~~~i~~v~~~~~~~gl~vIlE~~l~ 135 (236)
T PF01791_consen 111 IEEIAAVVEECHKYGLKVILEPYLR 135 (236)
T ss_dssp HHHHHHHHHHHHTSEEEEEEEECEC
T ss_pred HHHHHHHHHHHhcCCcEEEEEEecC
Confidence 5789999999999999999996664
No 142
>COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism]
Probab=63.45 E-value=7.8 Score=33.56 Aligned_cols=30 Identities=20% Similarity=0.312 Sum_probs=25.7
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEEec
Q 018833 10 ASKYGSQADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 10 ~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
|..-|+.+-.++||++||..|+.-++--.+
T Consensus 237 PTL~GSl~r~~eli~qAh~lGl~AVISSSi 266 (321)
T COG1441 237 PTLTGSLQRVRELVQQAHALGLTAVISSSI 266 (321)
T ss_pred ccchhhHHHHHHHHHHHHhcCceeEeechh
Confidence 667899999999999999999998875443
No 143
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=62.74 E-value=3.1 Score=31.61 Aligned_cols=33 Identities=12% Similarity=0.280 Sum_probs=27.0
Q ss_pred CcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 018833 3 GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 35 (350)
Q Consensus 3 ~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~Vil 35 (350)
.|+.++|+.+.|+..+.+++++.|+++||.++.
T Consensus 19 ~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~ 51 (111)
T PF13378_consen 19 VDIVQIDPTRCGGITEALRIAALAEAHGIPVMP 51 (111)
T ss_dssp CSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEE
T ss_pred CCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEe
Confidence 356667767889999999999999999999764
No 144
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=62.53 E-value=1.3e+02 Score=27.84 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRTAE 45 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~ 45 (350)
.+.|++|++++|+.|-++++=+ +|.+..
T Consensus 76 ~~~~~~l~~~vh~~G~~~~~QL--~H~G~~ 103 (336)
T cd02932 76 IEALKRIVDFIHSQGAKIGIQL--AHAGRK 103 (336)
T ss_pred HHHHHHHHHHHHhcCCcEEEEc--cCCCcC
Confidence 5799999999999999998765 677654
No 145
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=61.60 E-value=66 Score=29.95 Aligned_cols=28 Identities=21% Similarity=0.151 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRTAE 45 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~ 45 (350)
.+.|++|++++|++|-++++ -++|.+..
T Consensus 76 i~~lr~la~~vh~~ga~~~~--QL~H~G~~ 103 (338)
T cd02933 76 VEGWKKVTDAVHAKGGKIFL--QLWHVGRV 103 (338)
T ss_pred HHHHHHHHHHHHhcCCeEEE--EcccCccC
Confidence 57899999999999999998 45788754
No 146
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=61.47 E-value=13 Score=35.09 Aligned_cols=88 Identities=15% Similarity=0.180 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPA 95 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (350)
-+.|.++|+.|+++||+|||-+... .. +.|..-. .+.... .+..+.. ......
T Consensus 46 F~~lD~~l~~a~~~Gi~viL~~~~~-~~-------P~Wl~~~----~Pe~~~------------~~~~g~~---~~~g~~ 98 (374)
T PF02449_consen 46 FSWLDRVLDLAAKHGIKVILGTPTA-AP-------PAWLYDK----YPEILP------------VDADGRR---RGFGSR 98 (374)
T ss_dssp -HHHHHHHHHHHCTT-EEEEEECTT-TS--------HHHHCC----SGCCC-------------B-TTTSB---EECCCS
T ss_pred cHHHHHHHHHHHhccCeEEEEeccc-cc-------ccchhhh----cccccc------------cCCCCCc---CccCCc
Confidence 4679999999999999999977621 11 1121100 000000 0000000 011222
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcC----CCeEEeccc
Q 018833 96 PDIDHLNPRVQKELSDWMNWLKTEIG----FDGWRFDFV 130 (350)
Q Consensus 96 ~dln~~n~~v~~~l~~~~~~w~~~~g----vDGfR~D~a 130 (350)
...+..+|..++++.+.++.+.+.++ |-|+-+|.=
T Consensus 99 ~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE 137 (374)
T PF02449_consen 99 QHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNE 137 (374)
T ss_dssp TT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCS
T ss_pred cccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccc
Confidence 33567789999998888776665444 678888864
No 147
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=60.81 E-value=28 Score=32.08 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCCCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRTAER 46 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~ 46 (350)
.+.+|++++++|+.|-++++= ++|.+...
T Consensus 76 ~~~~~~~~~~vh~~g~~~~~Q--l~h~G~~~ 104 (327)
T cd02803 76 IPGLRKLTEAVHAHGAKIFAQ--LAHAGRQA 104 (327)
T ss_pred HHHHHHHHHHHHhCCCHhhHH--hhCCCcCC
Confidence 689999999999999998754 58887654
No 148
>TIGR03356 BGL beta-galactosidase.
Probab=60.40 E-value=26 Score=33.85 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEe
Q 018833 16 QADLKSLIQAFRQKGIKCLADMV 38 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V 38 (350)
.+-++++|++|+++||++|+++.
T Consensus 93 ~~~y~~~i~~l~~~gi~pivtL~ 115 (427)
T TIGR03356 93 LDFYDRLVDELLEAGIEPFVTLY 115 (427)
T ss_pred HHHHHHHHHHHHHcCCeeEEeec
Confidence 57789999999999999999986
No 149
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=60.28 E-value=12 Score=33.22 Aligned_cols=22 Identities=18% Similarity=0.474 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHCCCEEEEEE
Q 018833 16 QADLKSLIQAFRQKGIKCLADM 37 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~ 37 (350)
.+++++|++.||++||.|++.+
T Consensus 142 ~~~l~el~~~A~~LGm~~LVEV 163 (254)
T COG0134 142 DEQLEELVDRAHELGMEVLVEV 163 (254)
T ss_pred HHHHHHHHHHHHHcCCeeEEEE
Confidence 4679999999999999999987
No 150
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=59.23 E-value=13 Score=30.14 Aligned_cols=24 Identities=8% Similarity=0.210 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEE
Q 018833 14 GSQADLKSLIQAFRQKGIKCLADM 37 (350)
Q Consensus 14 Gt~~d~~~lv~~aH~~Gi~VilD~ 37 (350)
=|.+.+.+++++|+++|++||+=.
T Consensus 41 RTPe~m~~ya~~a~~~g~~viIAg 64 (162)
T COG0041 41 RTPEKMFEYAEEAEERGVKVIIAG 64 (162)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEec
Confidence 478999999999999999999854
No 151
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=58.67 E-value=4.6 Score=33.41 Aligned_cols=24 Identities=8% Similarity=0.232 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEE
Q 018833 14 GSQADLKSLIQAFRQKGIKCLADM 37 (350)
Q Consensus 14 Gt~~d~~~lv~~aH~~Gi~VilD~ 37 (350)
=++++++.||+.||++|+++-|--
T Consensus 164 m~~e~l~eFvd~Ah~hGL~~AlAG 187 (235)
T COG1891 164 MDEEELEEFVDLAHEHGLEVALAG 187 (235)
T ss_pred hcHHHHHHHHHHHHHcchHHHhcc
Confidence 368999999999999999987643
No 152
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=57.88 E-value=12 Score=29.09 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=24.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEE
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADM 37 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~ 37 (350)
.++-+..|++.+-+...++||+|++|=
T Consensus 16 ~ri~s~~d~k~~kk~m~~~gIkV~Idk 42 (132)
T PF15640_consen 16 QRIMSVKDIKNFKKEMGKRGIKVKIDK 42 (132)
T ss_pred cEeeeHHHHHHHHHHHHhCCcEEEECC
Confidence 566778999999999999999999983
No 153
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=57.87 E-value=89 Score=29.74 Aligned_cols=47 Identities=23% Similarity=0.040 Sum_probs=31.3
Q ss_pred HHHHHHH---HHHHHHHHHhcCCCeEEecccCCCCHH-----HHHHHHHhcCCCc
Q 018833 103 PRVQKEL---SDWMNWLKTEIGFDGWRFDFVKGYAPS-----ITKVYMENTSPDF 149 (350)
Q Consensus 103 ~~v~~~l---~~~~~~w~~~~gvDGfR~D~a~~~~~~-----~~~~~~~~~~p~~ 149 (350)
+...+++ ..-++.+++.||-|.+=+|.+-.-+.. -+.+.+++..|..
T Consensus 172 ~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~~~~~~~~~~~~l~~~~~~~qP~~ 226 (384)
T smart00812 172 PRFQEFVDDWLPQLRELVTRYKPDLLWFDGGWEAPDDYWRSKEFLAWLYNLSPVK 226 (384)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCccchhcHHHHHHHHHHhCCCC
Confidence 4456677 778888999999999999986433322 2233356666743
No 154
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=57.54 E-value=1.7e+02 Score=27.42 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRTAE 45 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~ 45 (350)
.+.+++|++++|+.|-++++=+ +|.+..
T Consensus 76 i~~~~~l~~~vh~~g~~~~~QL--~h~G~~ 103 (353)
T cd02930 76 AAGHRLITDAVHAEGGKIALQI--LHAGRY 103 (353)
T ss_pred HHHHHHHHHHHHHcCCEEEeec--cCCCCC
Confidence 6899999999999999988765 587754
No 155
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=56.92 E-value=85 Score=28.09 Aligned_cols=38 Identities=18% Similarity=0.166 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhc
Q 018833 107 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMENT 145 (350)
Q Consensus 107 ~~l~~~~~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~ 145 (350)
+++.+.++...+ .|+|.+++ |.+..+.++-..++++.+
T Consensus 138 ~~~~~~~~~~~~-~g~~~i~l~DT~G~~~P~~v~~lv~~l 176 (266)
T cd07944 138 EELLELLELVNE-IKPDVFYIVDSFGSMYPEDIKRIISLL 176 (266)
T ss_pred HHHHHHHHHHHh-CCCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 467777777766 89999986 888888887777775554
No 156
>PRK05939 hypothetical protein; Provisional
Probab=56.81 E-value=16 Score=34.88 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEec
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
...|...+++++++.||++|+.||+|-+.
T Consensus 142 NptG~v~dl~~I~~la~~~gi~livD~t~ 170 (397)
T PRK05939 142 NPGTQVADLAGIGALCRERGLLYVVDNTM 170 (397)
T ss_pred CCCCCHHhHHHHHHHHHHcCCEEEEECCc
Confidence 56888999999999999999999999764
No 157
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=56.76 E-value=17 Score=30.00 Aligned_cols=28 Identities=14% Similarity=0.249 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEEeccC
Q 018833 14 GSQADLKSLIQAFRQKGIKCLADMVINH 41 (350)
Q Consensus 14 Gt~~d~~~lv~~aH~~Gi~VilD~V~NH 41 (350)
+..+-+..+.++|.+.||+|++-+-++.
T Consensus 62 ~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~ 89 (166)
T PF14488_consen 62 PPVDLLEMILDAADKYGMKVFVGLYFDP 89 (166)
T ss_pred CcccHHHHHHHHHHHcCCEEEEeCCCCc
Confidence 5567899999999999999999988774
No 158
>PRK09028 cystathionine beta-lyase; Provisional
Probab=55.77 E-value=16 Score=34.77 Aligned_cols=30 Identities=17% Similarity=0.097 Sum_probs=27.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
...|...+++++++.||++|+.||+|-+.-
T Consensus 157 NPtg~v~dl~~I~~la~~~g~~lvvD~t~a 186 (394)
T PRK09028 157 SITMEVQDVPTLSRIAHEHDIVVMLDNTWA 186 (394)
T ss_pred CCCCcHHHHHHHHHHHHHcCCEEEEECCcc
Confidence 456889999999999999999999998874
No 159
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=55.07 E-value=4.2 Score=38.93 Aligned_cols=29 Identities=28% Similarity=0.456 Sum_probs=23.7
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEEe
Q 018833 10 ASKYGSQADLKSLIQAFRQKGIKCLADMV 38 (350)
Q Consensus 10 ~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V 38 (350)
|.-+|...|++.+++.||++|+.|++|=.
T Consensus 177 PTY~Gv~~di~~I~~~~h~~~~~llvDEA 205 (417)
T PF01276_consen 177 PTYYGVCYDIKEIAEICHKHGIPLLVDEA 205 (417)
T ss_dssp S-TTSEEE-HHHHHHHHCCTECEEEEE-T
T ss_pred CCCCeEEECHHHHHHHhcccCCEEEEEcc
Confidence 56788889999999999999999999953
No 160
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=54.52 E-value=38 Score=30.47 Aligned_cols=36 Identities=19% Similarity=0.415 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHH
Q 018833 105 VQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVY 141 (350)
Q Consensus 105 v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~ 141 (350)
+.+.+.+++..+.+ .||.|+-+|....-..+..+-+
T Consensus 104 ~~~~~~~~f~~~~~-~Gv~GvKidF~~~d~Q~~v~~y 139 (273)
T PF10566_consen 104 LEKQLDEAFKLYAK-WGVKGVKIDFMDRDDQEMVNWY 139 (273)
T ss_dssp HHCCHHHHHHHHHH-CTEEEEEEE--SSTSHHHHHHH
T ss_pred HHHHHHHHHHHHHH-cCCCEEeeCcCCCCCHHHHHHH
Confidence 44445667777776 9999999999988776644433
No 161
>PRK05967 cystathionine beta-lyase; Provisional
Probab=54.51 E-value=16 Score=34.83 Aligned_cols=30 Identities=17% Similarity=0.175 Sum_probs=27.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
...++..+++++++.||++|+-||+|-++.
T Consensus 160 NP~l~v~dl~~I~~la~~~g~~vvVD~t~a 189 (395)
T PRK05967 160 SNTFEMQDIPAIAEAAHRHGAIVMMDNTWA 189 (395)
T ss_pred CCCCcHHHHHHHHHHHHHhCCEEEEECCcc
Confidence 457899999999999999999999999885
No 162
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=54.04 E-value=14 Score=34.10 Aligned_cols=33 Identities=15% Similarity=0.408 Sum_probs=29.1
Q ss_pred CcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 018833 3 GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 35 (350)
Q Consensus 3 ~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~Vil 35 (350)
.|..++|+.+.|+..+++++++.|+++||+|++
T Consensus 247 ~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~ 279 (324)
T TIGR01928 247 VKVINIKPGRLGGLTEVQKAIETCREHGAKVWI 279 (324)
T ss_pred CCEEEeCcchhcCHHHHHHHHHHHHHcCCeEEE
Confidence 466677777889999999999999999999985
No 163
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=53.07 E-value=86 Score=28.44 Aligned_cols=38 Identities=16% Similarity=0.202 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhc
Q 018833 107 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMENT 145 (350)
Q Consensus 107 ~~l~~~~~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~ 145 (350)
+++.+.++-+.+ .|+|.+++ |++....+.-..++++.+
T Consensus 155 ~~~~~~~~~~~~-~G~d~i~l~DT~G~~~P~~v~~lv~~l 193 (287)
T PRK05692 155 EAVADVAERLFA-LGCYEISLGDTIGVGTPGQVRAVLEAV 193 (287)
T ss_pred HHHHHHHHHHHH-cCCcEEEeccccCccCHHHHHHHHHHH
Confidence 578888888887 99998886 777777777666665544
No 164
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=52.97 E-value=19 Score=31.34 Aligned_cols=33 Identities=9% Similarity=0.248 Sum_probs=28.8
Q ss_pred CcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 018833 3 GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 35 (350)
Q Consensus 3 ~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~Vil 35 (350)
.|...+++.+.|+..+.+++++.|+++|+.+++
T Consensus 169 ~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~ 201 (229)
T cd00308 169 VDILQIKPTRVGGLTESRRAADLAEAFGIRVMV 201 (229)
T ss_pred CCEEecCccccCCHHHHHHHHHHHHHcCCEEee
Confidence 466777877889999999999999999998876
No 165
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=52.18 E-value=2.6e+02 Score=29.34 Aligned_cols=29 Identities=14% Similarity=0.192 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHC-CCEEEEEEeccCCCCCC
Q 018833 16 QADLKSLIQAFRQK-GIKCLADMVINHRTAER 46 (350)
Q Consensus 16 ~~d~~~lv~~aH~~-Gi~VilD~V~NH~s~~~ 46 (350)
.+.+|++++++|++ |-+|++=+ +|.+...
T Consensus 474 i~~~~~~~~~vh~~gg~~i~~QL--~h~Gr~~ 503 (765)
T PRK08255 474 EAAWKRIVDFVHANSDAKIGIQL--GHSGRKG 503 (765)
T ss_pred HHHHHHHHHHHHhcCCceEEEEc--cCCcccc
Confidence 57899999999999 68887665 8887654
No 166
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=52.16 E-value=67 Score=28.30 Aligned_cols=39 Identities=15% Similarity=0.087 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhcC
Q 018833 107 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMENTS 146 (350)
Q Consensus 107 ~~l~~~~~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~~ 146 (350)
+++.+.++.+.+ .|+|.+++ |.+..+.++-+.++++.++
T Consensus 146 ~~l~~~~~~~~~-~g~~~i~l~Dt~G~~~P~~v~~li~~l~ 185 (265)
T cd03174 146 EYVLEVAKALEE-AGADEISLKDTVGLATPEEVAELVKALR 185 (265)
T ss_pred HHHHHHHHHHHH-cCCCEEEechhcCCcCHHHHHHHHHHHH
Confidence 467788888877 99999998 7888888887777755543
No 167
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=52.01 E-value=11 Score=34.93 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
+..|+++|++.|+++||.|||-.=|=
T Consensus 61 g~~dl~~f~~~a~~~gl~vilrpGpy 86 (319)
T PF01301_consen 61 GNRDLDRFLDLAQENGLYVILRPGPY 86 (319)
T ss_dssp GGG-HHHHHHHHHHTT-EEEEEEES-
T ss_pred chhhHHHHHHHHHHcCcEEEecccce
Confidence 45689999999999999999986553
No 168
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=51.89 E-value=21 Score=33.74 Aligned_cols=30 Identities=23% Similarity=0.199 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
...|...+++++++.||++|+.||+|-+.-
T Consensus 146 Np~g~~~dl~~I~~la~~~g~~livD~t~a 175 (377)
T TIGR01324 146 SITFEIQDIPAIAKAARNPGIVIMIDNTWA 175 (377)
T ss_pred CCCCcHHHHHHHHHHHHHcCCEEEEECCCc
Confidence 567889999999999999999999998864
No 169
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=51.80 E-value=1e+02 Score=27.81 Aligned_cols=73 Identities=10% Similarity=0.162 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHCCCEEEEEEeccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 018833 17 ADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAP 96 (350)
Q Consensus 17 ~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (350)
+..+..|+.|+++|+.|.+-+.......+.
T Consensus 114 ~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~-------------------------------------------------- 143 (274)
T cd07938 114 ERFEPVAELAKAAGLRVRGYVSTAFGCPYE-------------------------------------------------- 143 (274)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEeEecCCCC--------------------------------------------------
Confidence 667888999999999998877765332110
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhc
Q 018833 97 DIDHLNPRVQKELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMENT 145 (350)
Q Consensus 97 dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~ 145 (350)
.+.-.+++.+.++...+ .|+|.+++ |++....+....++++.+
T Consensus 144 -----~~~~~~~~~~~~~~~~~-~Ga~~i~l~DT~G~~~P~~v~~lv~~l 187 (274)
T cd07938 144 -----GEVPPERVAEVAERLLD-LGCDEISLGDTIGVATPAQVRRLLEAV 187 (274)
T ss_pred -----CCCCHHHHHHHHHHHHH-cCCCEEEECCCCCccCHHHHHHHHHHH
Confidence 00013577778887776 99999887 777777777777765544
No 170
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=51.46 E-value=16 Score=32.61 Aligned_cols=34 Identities=9% Similarity=0.248 Sum_probs=29.4
Q ss_pred CcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Q 018833 3 GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLAD 36 (350)
Q Consensus 3 ~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD 36 (350)
.|...+||.+.|+..+++++++.|+++|+++++-
T Consensus 204 ~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~ 237 (265)
T cd03315 204 ADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVG 237 (265)
T ss_pred CCEEEEecccccCHHHHHHHHHHHHHcCCcEEec
Confidence 4566777778899999999999999999999863
No 171
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=50.98 E-value=1.1e+02 Score=27.24 Aligned_cols=38 Identities=13% Similarity=0.010 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhc
Q 018833 107 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMENT 145 (350)
Q Consensus 107 ~~l~~~~~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~ 145 (350)
+++.+.++.+.+ .|+|.+++ |++..+.++-..++++.+
T Consensus 143 ~~~~~~~~~~~~-~G~~~i~l~DT~G~~~P~~v~~lv~~l 181 (268)
T cd07940 143 DFLIEVVEAAIE-AGATTINIPDTVGYLTPEEFGELIKKL 181 (268)
T ss_pred HHHHHHHHHHHH-cCCCEEEECCCCCCCCHHHHHHHHHHH
Confidence 577777887777 99999887 777888887777775544
No 172
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=49.77 E-value=19 Score=33.05 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEe
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMV 38 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V 38 (350)
+.++++++++.||++|+-||+|-.
T Consensus 144 ~~~~l~~i~~~~~~~~~~livDea 167 (338)
T cd06502 144 PLDELKAISALAKENGLPLHLDGA 167 (338)
T ss_pred CHHHHHHHHHHHHHcCCeEeechH
Confidence 479999999999999999999953
No 173
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=49.46 E-value=1.4e+02 Score=26.81 Aligned_cols=40 Identities=13% Similarity=0.093 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhcCC
Q 018833 107 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMENTSP 147 (350)
Q Consensus 107 ~~l~~~~~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~~p 147 (350)
+++.+.++...+ .|+|.+++ |++..+.++...++++.++.
T Consensus 149 ~~~~~~~~~~~~-~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~ 189 (275)
T cd07937 149 EYYVKLAKELED-MGADSICIKDMAGLLTPYAAYELVKALKK 189 (275)
T ss_pred HHHHHHHHHHHH-cCCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 577777777776 99999887 78888888877777665543
No 174
>PLN02509 cystathionine beta-lyase
Probab=48.30 E-value=25 Score=34.37 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=26.7
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEec
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
...|...+++++++.||++|+.||+|-..
T Consensus 228 NPtG~i~Dl~~I~~lAk~~g~~lIVD~A~ 256 (464)
T PLN02509 228 NPRQQISDIRKIAEMAHAQGALVLVDNSI 256 (464)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEECCc
Confidence 56789999999999999999999999883
No 175
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=48.28 E-value=24 Score=31.56 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEE
Q 018833 15 SQADLKSLIQAFRQKGIKCLADM 37 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~ 37 (350)
+.+++++|++.||+.||.+++|+
T Consensus 145 ~~~~l~~li~~a~~lGl~~lvev 167 (260)
T PRK00278 145 DDEQLKELLDYAHSLGLDVLVEV 167 (260)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEe
Confidence 35799999999999999999997
No 176
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=48.06 E-value=24 Score=31.30 Aligned_cols=22 Identities=18% Similarity=0.442 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHCCCEEEEEE
Q 018833 16 QADLKSLIQAFRQKGIKCLADM 37 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~ 37 (350)
.+++++|++.||+.||.+++.+
T Consensus 137 ~~~l~~l~~~a~~lGle~LVEV 158 (247)
T PRK13957 137 PSQIKSFLKHASSLGMDVLVEV 158 (247)
T ss_pred HHHHHHHHHHHHHcCCceEEEE
Confidence 5689999999999999999997
No 177
>PRK07050 cystathionine beta-lyase; Provisional
Probab=48.03 E-value=24 Score=33.56 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=27.6
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEeccC
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVINH 41 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH 41 (350)
...|...+++++++.||++|+.||+|-.+..
T Consensus 161 Np~~~~~di~~I~~ia~~~gi~livD~a~a~ 191 (394)
T PRK07050 161 SVTMEVPDVPAITAAARARGVVTAIDNTYSA 191 (394)
T ss_pred CCCccHhhHHHHHHHHHHcCCEEEEECCccc
Confidence 4568899999999999999999999999654
No 178
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=47.90 E-value=1.2e+02 Score=28.26 Aligned_cols=38 Identities=11% Similarity=0.118 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhc
Q 018833 107 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMENT 145 (350)
Q Consensus 107 ~~l~~~~~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~ 145 (350)
+++.+.++...+ +|+|.+++ |++..+.++-..++++.+
T Consensus 144 e~l~~~a~~~~~-~Ga~~i~i~DT~G~~~P~~v~~~v~~l 182 (337)
T PRK08195 144 EKLAEQAKLMES-YGAQCVYVVDSAGALLPEDVRDRVRAL 182 (337)
T ss_pred HHHHHHHHHHHh-CCCCEEEeCCCCCCCCHHHHHHHHHHH
Confidence 677777887776 99999984 888888887777765443
No 179
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=46.73 E-value=21 Score=33.38 Aligned_cols=33 Identities=9% Similarity=0.297 Sum_probs=28.7
Q ss_pred CcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 018833 3 GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 35 (350)
Q Consensus 3 ~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~Vil 35 (350)
.|..++++.+.|+..+++++++.|+++|+++++
T Consensus 252 ~d~~~ik~~~~GGit~~~~i~~~A~~~gi~~~~ 284 (354)
T cd03317 252 CKIINIKPGRVGGLTEALKIHDLCQEHGIPVWC 284 (354)
T ss_pred CCEEEecccccCCHHHHHHHHHHHHHcCCcEEe
Confidence 466777877889999999999999999999864
No 180
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=46.65 E-value=25 Score=31.33 Aligned_cols=22 Identities=18% Similarity=0.457 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEEE
Q 018833 16 QADLKSLIQAFRQKGIKCLADM 37 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~ 37 (350)
.+.+++|++.||..||.+++.+
T Consensus 144 ~~~l~~l~~~a~~lGle~lVEV 165 (254)
T PF00218_consen 144 DDQLEELLELAHSLGLEALVEV 165 (254)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHHHHcCCCeEEEE
Confidence 5679999999999999999998
No 181
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=46.38 E-value=23 Score=27.34 Aligned_cols=24 Identities=21% Similarity=0.486 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEE
Q 018833 12 KYGSQADLKSLIQAFRQKGIKCLA 35 (350)
Q Consensus 12 ~~Gt~~d~~~lv~~aH~~Gi~Vil 35 (350)
.=|...+..++++.||++|++||.
T Consensus 56 ~sG~t~~~~~~~~~a~~~g~~vi~ 79 (128)
T cd05014 56 NSGETDELLNLLPHLKRRGAPIIA 79 (128)
T ss_pred CCCCCHHHHHHHHHHHHCCCeEEE
Confidence 346678899999999999999885
No 182
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=46.37 E-value=19 Score=33.92 Aligned_cols=29 Identities=10% Similarity=0.154 Sum_probs=26.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEec
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
...|...+++++++.||++|+.||+|-+.
T Consensus 136 np~g~~~dl~~i~~la~~~g~~livD~t~ 164 (369)
T cd00614 136 NPTLKVVDIEAIAELAHEHGALLVVDNTF 164 (369)
T ss_pred CCCCeecCHHHHHHHHHHcCCEEEEECCC
Confidence 45688889999999999999999999874
No 183
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=46.31 E-value=88 Score=28.53 Aligned_cols=20 Identities=30% Similarity=0.273 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHCCCEEEE
Q 018833 16 QADLKSLIQAFRQKGIKCLA 35 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~Vil 35 (350)
...+.+-|++++++|.+||+
T Consensus 53 ~~~~~~~i~~lk~~G~kVii 72 (294)
T cd06543 53 GGWIKSDIAALRAAGGDVIV 72 (294)
T ss_pred chhHHHHHHHHHHcCCeEEE
Confidence 56788899999999999988
No 184
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=46.00 E-value=20 Score=32.90 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=28.9
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Q 018833 4 RLYDLDASKYGSQADLKSLIQAFRQKGIKCLAD 36 (350)
Q Consensus 4 d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD 36 (350)
|...+++.+.|+..+.+++++.|+++||++++-
T Consensus 231 d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~ 263 (307)
T TIGR01927 231 GALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFS 263 (307)
T ss_pred ceEEECchhcCCHHHHHHHHHHHHHcCCCEEEE
Confidence 556677778999999999999999999999874
No 185
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=45.81 E-value=24 Score=24.87 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=20.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEE
Q 018833 12 KYGSQADLKSLIQAFRQKGIKCLA 35 (350)
Q Consensus 12 ~~Gt~~d~~~lv~~aH~~Gi~Vil 35 (350)
.-|...+...+++.|+++|.++|.
T Consensus 56 ~sg~t~~~~~~~~~a~~~g~~ii~ 79 (87)
T cd04795 56 YSGRTEELLAALEIAKELGIPVIA 79 (87)
T ss_pred CCCCCHHHHHHHHHHHHcCCeEEE
Confidence 346667899999999999999874
No 186
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=45.47 E-value=31 Score=32.42 Aligned_cols=29 Identities=10% Similarity=0.288 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEec
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
...|+..+++++++.||++|+.||+|-++
T Consensus 147 NP~~~~~dl~~I~~la~~~g~~lIvD~t~ 175 (366)
T PRK08247 147 NPLMQETDIAAIAKIAKKHGLLLIVDNTF 175 (366)
T ss_pred CCCCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 34789999999999999999999999876
No 187
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=45.42 E-value=1.4e+02 Score=27.75 Aligned_cols=38 Identities=13% Similarity=0.160 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhc
Q 018833 107 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMENT 145 (350)
Q Consensus 107 ~~l~~~~~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~ 145 (350)
+++.+.++...+ +|+|.+++ |++..+.++-..++++.+
T Consensus 143 e~l~~~a~~~~~-~Ga~~i~i~DT~G~~~P~~v~~~v~~l 181 (333)
T TIGR03217 143 EKLAEQAKLMES-YGADCVYIVDSAGAMLPDDVRDRVRAL 181 (333)
T ss_pred HHHHHHHHHHHh-cCCCEEEEccCCCCCCHHHHHHHHHHH
Confidence 577888887766 99999876 888888877666664443
No 188
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=45.27 E-value=17 Score=33.56 Aligned_cols=29 Identities=24% Similarity=0.232 Sum_probs=26.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEec
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
..-|...+++++++.||++|+.||+|-+.
T Consensus 143 ~~tG~~~~~~~i~~~~~~~~~~livD~a~ 171 (349)
T cd06454 143 SMDGDIAPLPELVDLAKKYGAILFVDEAH 171 (349)
T ss_pred cCCCCccCHHHHHHHHHHcCCEEEEEccc
Confidence 34688889999999999999999999994
No 189
>PRK15029 arginine decarboxylase; Provisional
Probab=45.15 E-value=17 Score=37.82 Aligned_cols=28 Identities=11% Similarity=-0.004 Sum_probs=25.8
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEE
Q 018833 10 ASKYGSQADLKSLIQAFRQKGIKCLADM 37 (350)
Q Consensus 10 ~~~~Gt~~d~~~lv~~aH~~Gi~VilD~ 37 (350)
|.-+|...+++.+++.||++|+.|++|=
T Consensus 321 PTY~Gv~~di~~I~~~~h~~~~~llvDE 348 (755)
T PRK15029 321 CTYDGVCYNAKEAQDLLEKTSDRLHFDE 348 (755)
T ss_pred CCCcceeeCHHHHHHHHHhcCCeEEEEC
Confidence 5678999999999999999999999994
No 190
>PF09196 DUF1953: Domain of unknown function (DUF1953); InterPro: IPR015279 This domain is found in the Archaeal protein maltooligosyl trehalose synthase produced by Sulfolobus spp. Its function has not, as yet, been defined. ; PDB: 3HJE_A 1IV8_A.
Probab=45.07 E-value=16 Score=23.91 Aligned_cols=45 Identities=9% Similarity=-0.006 Sum_probs=27.1
Q ss_pred eEEEecCCCEEEEEECCEEEEEeCCC----CCCCCcCCCCcEEEEcCCc
Q 018833 299 VNILASDADVYIAAIGDRVIMKIGPK----MDIGNLIPSDFKVAADGTD 343 (350)
Q Consensus 299 ~~~~~~~~~~~~~~r~~~~lv~~n~~----~~~~~~~~~~~~~~~~~~~ 343 (350)
+..+...+.+..|.|.+++||++-.. .+..-.....|++++.++.
T Consensus 2 yk~l~l~~glcgf~r~~kilviiktkgs~n~~~~~e~~~~ytdv~t~e~ 50 (66)
T PF09196_consen 2 YKGLDLEEGLCGFIRFNKILVIIKTKGSVNYKYKIEEGAIYTDVITGEE 50 (66)
T ss_dssp EEEE---TTEEEEEETTTEEEEEES-TTSSCEEEEECCEEEEETTTTEE
T ss_pred CcccchhhcceeEEecCEEEEEEecccccceeeeeccCcEEEeeecChh
Confidence 44566778899999999999988763 2222233446777666543
No 191
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=44.93 E-value=20 Score=33.77 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=25.9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEec
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
...|...|++++++.||++|+.||+|-.+
T Consensus 147 NPtg~~~di~~I~~la~~~gi~vvvD~t~ 175 (364)
T PRK07269 147 NPLMVEFDIEKVAKLAHAKGAKVIVDNTF 175 (364)
T ss_pred CCCCeeeCHHHHHHHHHHcCCEEEEECCC
Confidence 45678889999999999999999999985
No 192
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=44.79 E-value=28 Score=32.28 Aligned_cols=22 Identities=18% Similarity=0.478 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHCCCEEEEEE
Q 018833 16 QADLKSLIQAFRQKGIKCLADM 37 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~ 37 (350)
.++|+.|++.||+.||.+++.+
T Consensus 216 ~~~L~~l~~~A~~LGme~LVEV 237 (338)
T PLN02460 216 DLDIKYMLKICKSLGMAALIEV 237 (338)
T ss_pred HHHHHHHHHHHHHcCCeEEEEe
Confidence 5689999999999999999997
No 193
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=44.77 E-value=23 Score=31.57 Aligned_cols=34 Identities=21% Similarity=0.247 Sum_probs=29.3
Q ss_pred CcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Q 018833 3 GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLAD 36 (350)
Q Consensus 3 ~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD 36 (350)
.|...+++.+.|+..+.+++++.|+++||.+++-
T Consensus 200 ~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~ 233 (263)
T cd03320 200 LGALVLKPALLGGPRALLELAEEARARGIPAVVS 233 (263)
T ss_pred CCEEEECchhcCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4666777667899999999999999999999874
No 194
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=44.61 E-value=1.4e+02 Score=25.87 Aligned_cols=38 Identities=21% Similarity=0.122 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhc
Q 018833 107 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMENT 145 (350)
Q Consensus 107 ~~l~~~~~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~ 145 (350)
+++.+.++...+ .|+|.+++ |++..+.+....++++.+
T Consensus 137 ~~~~~~~~~~~~-~g~~~i~l~Dt~G~~~P~~v~~lv~~~ 175 (237)
T PF00682_consen 137 EELLELAEALAE-AGADIIYLADTVGIMTPEDVAELVRAL 175 (237)
T ss_dssp HHHHHHHHHHHH-HT-SEEEEEETTS-S-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCeEEEeeCccCCcCHHHHHHHHHHH
Confidence 577788888877 89999986 678888887777775443
No 195
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=44.55 E-value=1.6e+02 Score=26.04 Aligned_cols=39 Identities=23% Similarity=0.220 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhcC
Q 018833 107 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMENTS 146 (350)
Q Consensus 107 ~~l~~~~~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~~ 146 (350)
+++.+.++...+ .|+|.+++ |.+..+.++-..++++.++
T Consensus 139 ~~~~~~~~~~~~-~G~~~i~l~DT~G~~~P~~v~~lv~~l~ 178 (259)
T cd07939 139 DFLIEFAEVAQE-AGADRLRFADTVGILDPFTTYELIRRLR 178 (259)
T ss_pred HHHHHHHHHHHH-CCCCEEEeCCCCCCCCHHHHHHHHHHHH
Confidence 577788887776 99999887 7777777777777755443
No 196
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=44.52 E-value=24 Score=32.20 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVINHR 42 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~NH~ 42 (350)
+.++++++++.||++|+.||+|-+....
T Consensus 150 ~~~~l~~l~~~~~~~~~~~ivD~a~~~~ 177 (350)
T cd00609 150 SEEELEELAELAKKHGILIISDEAYAEL 177 (350)
T ss_pred CHHHHHHHHHHHHhCCeEEEEecchhhc
Confidence 3678999999999999999999987543
No 197
>PRK05968 hypothetical protein; Provisional
Probab=44.34 E-value=31 Score=32.73 Aligned_cols=29 Identities=17% Similarity=0.134 Sum_probs=25.9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEec
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
...+...+++++.+.||++|+.||+|-..
T Consensus 158 ~~~~~~~dl~~i~~la~~~gi~vivD~a~ 186 (389)
T PRK05968 158 SWVFELQDVAALAALAKRHGVVTMIDNSW 186 (389)
T ss_pred CCCCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 45777899999999999999999999864
No 198
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=43.38 E-value=22 Score=32.59 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=29.1
Q ss_pred CcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Q 018833 3 GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLAD 36 (350)
Q Consensus 3 ~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD 36 (350)
.|..++|+.+.|+..+.+++++.|+++|++|++-
T Consensus 252 ~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~ 285 (316)
T cd03319 252 YDGINIKLMKTGGLTEALRIADLARAAGLKVMVG 285 (316)
T ss_pred CCEEEEeccccCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3555677788899999999999999999999864
No 199
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=43.30 E-value=29 Score=31.85 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEe
Q 018833 16 QADLKSLIQAFRQKGIKCLADMV 38 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V 38 (350)
.+.|.+|++.|+++|.+|++|.-
T Consensus 145 ~d~y~~li~~~~~~g~~vilD~S 167 (310)
T COG1105 145 PDAYAELIRILRQQGAKVILDTS 167 (310)
T ss_pred HHHHHHHHHHHHhcCCeEEEECC
Confidence 67899999999999999999964
No 200
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=43.25 E-value=28 Score=32.68 Aligned_cols=22 Identities=14% Similarity=0.533 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHHCCCEEEEE
Q 018833 15 SQADLKSLIQAFRQKGIKCLAD 36 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD 36 (350)
|.|+|.++.+-|.++|+.||-|
T Consensus 176 t~eeL~~i~elc~kh~v~VISD 197 (388)
T COG1168 176 TKEELRKIAELCLRHGVRVISD 197 (388)
T ss_pred cHHHHHHHHHHHHHcCCEEEee
Confidence 4899999999999999999965
No 201
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=43.16 E-value=20 Score=33.39 Aligned_cols=30 Identities=20% Similarity=0.367 Sum_probs=27.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
...|+..+++++++.||++|+.||+|-+.-
T Consensus 150 n~tG~~~~~~~i~~~~~~~~~~vivD~a~~ 179 (361)
T cd06452 150 GNYGNLHDAKKIAKVCHEYGVPLLLNGAYT 179 (361)
T ss_pred CCCeeeccHHHHHHHHHHcCCeEEEECCcc
Confidence 468999999999999999999999999864
No 202
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=43.16 E-value=25 Score=32.44 Aligned_cols=28 Identities=21% Similarity=0.170 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
.++++++++.|+++|+.||+|-++-...
T Consensus 144 ~~~~~~l~~~a~~~~~~ii~De~y~~~~ 171 (330)
T TIGR01140 144 PETLLALAARLRARGGWLVVDEAFIDFT 171 (330)
T ss_pred HHHHHHHHHHhHhcCCEEEEECcccccC
Confidence 7889999999999999999999885443
No 203
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=42.66 E-value=17 Score=29.02 Aligned_cols=31 Identities=23% Similarity=0.208 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 13 YGSQADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 13 ~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
-|...+++++++.||++|+.+|+|-...-..
T Consensus 105 ~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~ 135 (170)
T cd01494 105 GGVLVPLKEIRKIAKEYGILLLVDAASAGGA 135 (170)
T ss_pred CCeEcCHHHHHHHHHHcCCEEEEeccccccc
Confidence 3445567999999999999999998765443
No 204
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=42.58 E-value=26 Score=33.19 Aligned_cols=30 Identities=27% Similarity=0.392 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
...|+..+++++++.||++|+.||+|-+.-
T Consensus 169 ~~tG~~~~l~~I~~la~~~g~~livD~a~~ 198 (387)
T PRK09331 169 GNYGNLADAKKVAKVAHEYGIPFLLNGAYT 198 (387)
T ss_pred CCCcccccHHHHHHHHHHcCCEEEEECCcc
Confidence 568999999999999999999999999743
No 205
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=42.18 E-value=31 Score=30.03 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHCCCEEEEEEec
Q 018833 17 ADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 17 ~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
++++++++.||+.|+++|+|..+
T Consensus 109 ~~i~~v~~~~~~~g~~~iie~~~ 131 (235)
T cd00958 109 EELARVAAEAHKYGLPLIAWMYP 131 (235)
T ss_pred HHHHHHHHHHHHcCCCEEEEEec
Confidence 48999999999999999998644
No 206
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=41.76 E-value=1.3e+02 Score=29.44 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhcC
Q 018833 105 VQKELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMENTS 146 (350)
Q Consensus 105 v~~~l~~~~~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~~ 146 (350)
..+++.+.++...+ .|+|.+.+ |++..+.+....++++.++
T Consensus 161 t~~y~~~~a~~l~~-~Gad~I~IkDtaG~l~P~~v~~Lv~alk 202 (468)
T PRK12581 161 TLNYYLSLVKELVE-MGADSICIKDMAGILTPKAAKELVSGIK 202 (468)
T ss_pred cHHHHHHHHHHHHH-cCCCEEEECCCCCCcCHHHHHHHHHHHH
Confidence 56788888888887 99999887 8888888887777766554
No 207
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=41.67 E-value=24 Score=33.56 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
...|+..+++++++.||++|+.||+|-+.-
T Consensus 157 NPtg~~~dl~~I~~la~~~gi~lIvD~a~a 186 (388)
T PRK07811 157 NPLLSITDIAALAELAHDAGAKVVVDNTFA 186 (388)
T ss_pred CCcceecCHHHHHHHHHHcCCEEEEECCCC
Confidence 456889999999999999999999998754
No 208
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=41.63 E-value=55 Score=31.83 Aligned_cols=34 Identities=15% Similarity=0.141 Sum_probs=29.5
Q ss_pred CCC-HHHHHHHHHHHHHCCCEEEEEEecc--CCCCCC
Q 018833 13 YGS-QADLKSLIQAFRQKGIKCLADMVIN--HRTAER 46 (350)
Q Consensus 13 ~Gt-~~d~~~lv~~aH~~Gi~VilD~V~N--H~s~~~ 46 (350)
-|+ .+-+..|++.|..++|||++-++.+ |||.-+
T Consensus 62 a~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~N 98 (587)
T COG3934 62 AGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTN 98 (587)
T ss_pred ccccHHHHHHHhhhcccCcceEEEEEeecccccCcce
Confidence 345 7778899999999999999999999 999654
No 209
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=41.55 E-value=22 Score=33.88 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=26.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEEEEe
Q 018833 8 LDASKYGSQADLKSLIQAFRQKGIKCLADMV 38 (350)
Q Consensus 8 id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V 38 (350)
+. ..-|...+++++.+.||++|+.|++|.+
T Consensus 180 v~-~~tG~~~~~~~i~~~~~~~g~~~~vD~a 209 (406)
T TIGR01814 180 VQ-YYTGQLFDMAAITRAAHAKGALVGFDLA 209 (406)
T ss_pred cc-cccceecCHHHHHHHHHHcCCEEEEEcc
Confidence 44 5678889999999999999999999986
No 210
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=41.11 E-value=31 Score=26.49 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEE
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLA 35 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~Vil 35 (350)
..-|...+..+.++.|+++|++||.
T Consensus 51 S~SG~t~e~i~~~~~a~~~g~~iI~ 75 (119)
T cd05017 51 SYSGNTEETLSAVEQAKERGAKIVA 75 (119)
T ss_pred ECCCCCHHHHHHHHHHHHCCCEEEE
Confidence 3557788999999999999999973
No 211
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=41.05 E-value=24 Score=33.42 Aligned_cols=29 Identities=7% Similarity=0.162 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEec
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
...|...+++++++.||++|+.||+|-..
T Consensus 142 nptg~v~dl~~I~~la~~~g~~vivD~a~ 170 (378)
T TIGR01329 142 NPLQKIVDIRKISEMAHAQNALVVVDNTM 170 (378)
T ss_pred CCCCeeecHHHHHHHHHHcCCEEEEECCC
Confidence 56788889999999999999999999873
No 212
>KOG2584 consensus Dihydroorotase and related enzymes [Nucleotide transport and metabolism]
Probab=40.98 E-value=33 Score=32.84 Aligned_cols=85 Identities=20% Similarity=0.330 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPA 95 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (350)
.+||-+=-++|=.=|--.|+|+|++-.+...-. .|. .|. .|.+ +....++...
T Consensus 85 ~DdF~~GTkAAlaGGtTmiID~vlp~~~~slv~---afe-----------~wr---------~~Ad----~k~cCDyglh 137 (522)
T KOG2584|consen 85 VDDFFQGTKAALAGGTTMIIDFVLPDKGTSLVE---AFE-----------KWR---------EWAD----PKVCCDYGLH 137 (522)
T ss_pred hhhhhcccHHHhcCCceEEEEEecCCCCchHHH---HHH-----------HHH---------hhcC----Cceeeeeeee
Confidence 688988899999999999999999866321100 011 111 1111 1122344444
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccC
Q 018833 96 PDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVK 131 (350)
Q Consensus 96 ~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~ 131 (350)
.++-++++.|.+.|-- +++++||.+|-+++|.
T Consensus 138 v~It~W~~~v~eem~~----l~~ekGvnsF~~fmay 169 (522)
T KOG2584|consen 138 VGITWWSPSVKEEMEI----LVKEKGVNSFKFFMAY 169 (522)
T ss_pred EeeeecCcchHHHHHH----HhhhcCcceEEeeeee
Confidence 5577778877776543 3367999999999874
No 213
>PLN02651 cysteine desulfurase
Probab=40.88 E-value=25 Score=32.91 Aligned_cols=31 Identities=13% Similarity=0.206 Sum_probs=27.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEEEEec
Q 018833 8 LDASKYGSQADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 8 id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
+. ..-|...+++++.+.||++|+.+++|.+-
T Consensus 147 ~~-n~tG~~~~l~~I~~~~~~~g~~~~vD~a~ 177 (364)
T PLN02651 147 VN-NEIGVIQPVEEIGELCREKKVLFHTDAAQ 177 (364)
T ss_pred CC-CCceecccHHHHHHHHHHcCCEEEEEcch
Confidence 44 56788999999999999999999999873
No 214
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=40.83 E-value=30 Score=31.23 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
.+.|+++|++++++|+.||+|+=.+
T Consensus 72 ~~~l~~~i~~l~~~g~~VilD~K~~ 96 (278)
T PRK00125 72 LAQLERTIAYLREAGVLVIADAKRG 96 (278)
T ss_pred hhHHHHHHHHHHHCCCcEEEEeecC
Confidence 4578889999999999999999765
No 215
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=40.73 E-value=37 Score=31.26 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEecc
Q 018833 101 LNPRVQKELSDWMNWLKTEIGFDGWRFDF 129 (350)
Q Consensus 101 ~n~~v~~~l~~~~~~w~~~~gvDGfR~D~ 129 (350)
.+++.|+.+++.+..+++++|+||+-+|-
T Consensus 105 ~~~~~r~~Fi~siv~~l~~~~fDGidiDw 133 (322)
T cd06548 105 ATEASRAKFADSAVDFIRKYGFDGIDIDW 133 (322)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEECC
Confidence 47888998998888777779999999995
No 216
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=40.70 E-value=25 Score=34.06 Aligned_cols=29 Identities=14% Similarity=0.216 Sum_probs=26.2
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEec
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
...|...|++++++.||++|+.||+|-..
T Consensus 166 Np~G~v~Dl~~I~~la~~~gi~liVD~t~ 194 (436)
T PRK07812 166 NPQIDVLDIPGVAEVAHEAGVPLIVDNTI 194 (436)
T ss_pred CCCCeecCHHHHHHHHHHcCCEEEEECCC
Confidence 56789999999999999999999999863
No 217
>PF12905 Glyco_hydro_101: Endo-alpha-N-acetylgalactosaminidase; PDB: 3ECQ_B 2ZXQ_A.
Probab=40.62 E-value=16 Score=34.66 Aligned_cols=36 Identities=14% Similarity=0.204 Sum_probs=28.2
Q ss_pred CcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEec
Q 018833 3 GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 3 ~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
.||-.|. +|.|+.+||+.|+++.|+-|-++=+=|-.
T Consensus 82 pdy~~~~-~R~GG~~D~~~L~~~g~~yna~~GvHVNa 117 (425)
T PF12905_consen 82 PDYGNIN-KRAGGAEDFNTLLEEGRKYNAKFGVHVNA 117 (425)
T ss_dssp T-TT-B--GGGTHHHHHHHHHHHHHTTTEEEEEEEES
T ss_pred cchhhhc-cccccHHHHHHHHHHHHhhCCeEEEEEcc
Confidence 3788899 99999999999999999999887665543
No 218
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=40.60 E-value=35 Score=32.88 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
.++++++++.|+++|+-||.|=++.|..
T Consensus 209 ~~~l~~i~~~a~~~~i~ii~De~Y~~~~ 236 (430)
T PLN00145 209 YEHLAKIAETARKLGILVIADEVYDHLT 236 (430)
T ss_pred HHHHHHHHHHHHHcCCEEEEeccchhhc
Confidence 6889999999999999999999998875
No 219
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=40.49 E-value=33 Score=33.20 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEe
Q 018833 16 QADLKSLIQAFRQKGIKCLADMV 38 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V 38 (350)
+++++++.+-|+++||.||.|-.
T Consensus 172 ~~~l~~i~eia~~~gi~li~DaA 194 (431)
T cd00617 172 MANLREVRELAHKYGIPVVLDAA 194 (431)
T ss_pred HHHHHHHHHHHHHcCCEEEEEch
Confidence 78999999999999999999998
No 220
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=39.99 E-value=28 Score=32.65 Aligned_cols=33 Identities=15% Similarity=0.257 Sum_probs=28.4
Q ss_pred CcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 018833 3 GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 35 (350)
Q Consensus 3 ~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~Vil 35 (350)
.|..++|+.+.|+..+++++++.|+++||+++.
T Consensus 263 ~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~ 295 (365)
T cd03318 263 ADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYG 295 (365)
T ss_pred CCeEEEeecccCCHHHHHHHHHHHHHcCCceee
Confidence 466677777889999999999999999999763
No 221
>PRK08960 hypothetical protein; Provisional
Probab=39.93 E-value=38 Score=31.97 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
.++++++++.||++|+-||+|=++.+..
T Consensus 184 ~~~~~~l~~~~~~~~~~li~De~Y~~~~ 211 (387)
T PRK08960 184 RDELAALSQALRARGGHLVVDEIYHGLT 211 (387)
T ss_pred HHHHHHHHHHHHHcCCEEEEEccccccc
Confidence 7899999999999999999999987653
No 222
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=39.93 E-value=34 Score=33.53 Aligned_cols=29 Identities=10% Similarity=0.096 Sum_probs=25.1
Q ss_pred CCCCCCH-HHHHHHHHHHHHCCCEEEEEEe
Q 018833 10 ASKYGSQ-ADLKSLIQAFRQKGIKCLADMV 38 (350)
Q Consensus 10 ~~~~Gt~-~d~~~lv~~aH~~Gi~VilD~V 38 (350)
|...|.. ++++++++.||++|.-+++|.+
T Consensus 217 Pn~tG~~~~dl~eI~~~a~~~gal~iVD~a 246 (481)
T PRK04366 217 PNTLGLFERNILEIAEIVHEAGGLLYYDGA 246 (481)
T ss_pred CCCccccchHHHHHHHHHHHcCCEEEEEec
Confidence 3457876 5899999999999999999987
No 223
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=39.83 E-value=32 Score=32.17 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEe
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMV 38 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V 38 (350)
+.++|++.|+.||++|.|+++=+-
T Consensus 47 s~~~l~e~i~~ah~~gkk~~V~~N 70 (347)
T COG0826 47 SVEDLAEAVELAHSAGKKVYVAVN 70 (347)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEec
Confidence 578899999999999999986543
No 224
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=39.63 E-value=38 Score=31.14 Aligned_cols=29 Identities=14% Similarity=0.186 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEecc
Q 018833 101 LNPRVQKELSDWMNWLKTEIGFDGWRFDF 129 (350)
Q Consensus 101 ~n~~v~~~l~~~~~~w~~~~gvDGfR~D~ 129 (350)
.++..|+.+++.+..+++++|.||+-+|.
T Consensus 88 ~~~~~R~~fi~s~~~~~~~~~~DGidiD~ 116 (318)
T cd02876 88 NDEQEREKLIKLLVTTAKKNHFDGIVLEV 116 (318)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCcEEEec
Confidence 47889999998888777779999999994
No 225
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=39.38 E-value=33 Score=32.70 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccCCCCCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVINHRTAER 46 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~ 46 (350)
+.++|+++++-|.++|+-||-|-++.+...+.
T Consensus 181 ~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~ 212 (393)
T COG0436 181 SKEELKAIVELAREHDIIIISDEIYEELVYDG 212 (393)
T ss_pred CHHHHHHHHHHHHHcCeEEEEehhhhhcccCC
Confidence 48999999999999999999999999987653
No 226
>PRK15129 L-Ala-D/L-Glu epimerase; Provisional
Probab=39.35 E-value=29 Score=32.05 Aligned_cols=33 Identities=15% Similarity=0.294 Sum_probs=28.6
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Q 018833 4 RLYDLDASKYGSQADLKSLIQAFRQKGIKCLAD 36 (350)
Q Consensus 4 d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD 36 (350)
|...+++.+.|+....+++++.|+++||++++-
T Consensus 242 d~v~~k~~~~GGi~~a~~i~~~a~~~gi~~~~g 274 (321)
T PRK15129 242 EMVNIKLDKTGGLTEALALATEARAQGFALMLG 274 (321)
T ss_pred CEEEeCchhhCCHHHHHHHHHHHHHcCCcEEEe
Confidence 455667678899999999999999999999973
No 227
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=39.18 E-value=30 Score=32.47 Aligned_cols=32 Identities=25% Similarity=0.497 Sum_probs=28.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 8 LDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 8 id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
++ ...|+..+++++++.||++|..||+|-..-
T Consensus 155 p~-~~~G~~~~l~~i~~la~~~~~~livDea~~ 186 (370)
T TIGR02539 155 VD-GEYGNLPDAGKVAKVCREKGVPLLLNCAYT 186 (370)
T ss_pred CC-CCCccccCHHHHHHHHHHcCCeEEEECccc
Confidence 45 678999999999999999999999998743
No 228
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=39.15 E-value=26 Score=33.16 Aligned_cols=30 Identities=20% Similarity=0.271 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
...|+..+++++++.||++|+.||+|-+.-
T Consensus 150 np~g~~~dl~~I~~la~~~gi~livD~a~~ 179 (380)
T TIGR01325 150 NPLGELVDIAALAELAHAIGALLVVDNVFA 179 (380)
T ss_pred CCCCeeeCHHHHHHHHHHcCCEEEEECCCc
Confidence 457888999999999999999999999854
No 229
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=39.12 E-value=38 Score=30.88 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 018833 101 LNPRVQKELSDWMNWLKTEIGFDGWRFDFV 130 (350)
Q Consensus 101 ~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a 130 (350)
.++..|+.+++.+.-+++++|+||+-+|==
T Consensus 88 ~~~~~R~~fi~siv~~l~~~~fDGidiDWE 117 (299)
T cd02879 88 SDPTARKAFINSSIKVARKYGFDGLDLDWE 117 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceeeccc
Confidence 478889999988887777799999999943
No 230
>PLN03059 beta-galactosidase; Provisional
Probab=38.97 E-value=30 Score=36.13 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEEec
Q 018833 13 YGSQADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 13 ~Gt~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
|.+..||.+|++.|++.||.|||=.=|
T Consensus 94 F~G~~DL~~Fl~la~e~GLyvilRpGP 120 (840)
T PLN03059 94 FEDRYDLVKFIKVVQAAGLYVHLRIGP 120 (840)
T ss_pred ccchHHHHHHHHHHHHcCCEEEecCCc
Confidence 556889999999999999999996543
No 231
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=38.88 E-value=34 Score=26.42 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEE
Q 018833 12 KYGSQADLKSLIQAFRQKGIKCLA 35 (350)
Q Consensus 12 ~~Gt~~d~~~lv~~aH~~Gi~Vil 35 (350)
.-|...+..++++.|+++|+++|+
T Consensus 69 ~~g~~~~~~~~~~~a~~~g~~iv~ 92 (139)
T cd05013 69 FSGETKETVEAAEIAKERGAKVIA 92 (139)
T ss_pred CCCCCHHHHHHHHHHHHcCCeEEE
Confidence 456678899999999999999864
No 232
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=38.86 E-value=40 Score=30.73 Aligned_cols=31 Identities=16% Similarity=0.165 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 018833 100 HLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 130 (350)
Q Consensus 100 ~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a 130 (350)
..++..|+.+++.+..+++++|.||+-+|--
T Consensus 83 l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E 113 (298)
T cd06549 83 LADPSARAKFIANIAAYLERNQADGIVLDFE 113 (298)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCCCEEEecC
Confidence 3578889989888887777799999999974
No 233
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=38.61 E-value=37 Score=30.37 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
...|+++++.+|++|+.||+|+=.+
T Consensus 72 i~~l~~~~~~~~~~g~~VilD~K~~ 96 (261)
T TIGR02127 72 FKALEEVIAHARSLGLPVLADVKRG 96 (261)
T ss_pred HHHHHHHHHHHHHCCCeEEEEeecc
Confidence 5678888899999999999999765
No 234
>PHA00450 host dGTPase inhibitor
Probab=38.52 E-value=52 Score=23.40 Aligned_cols=27 Identities=7% Similarity=0.181 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 14 GSQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 14 Gt~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
|.+.+||+.++++.++.+.||.+=-..
T Consensus 7 GNL~afKaA~~RL~q~D~aVi~e~~~~ 33 (85)
T PHA00450 7 GNLNAFKAATARLFEHDVAVIVEEFYY 33 (85)
T ss_pred CcHHHHHHHHHHHHhcceeEEEeehhc
Confidence 779999999999999999999875433
No 235
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=38.36 E-value=2.3e+02 Score=25.16 Aligned_cols=39 Identities=15% Similarity=0.176 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhcC
Q 018833 107 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMENTS 146 (350)
Q Consensus 107 ~~l~~~~~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~~ 146 (350)
+++.+.++...+ .|+|.+++ |++..+.++-..++++.++
T Consensus 141 ~~~~~~~~~~~~-~G~d~i~l~DT~G~~~P~~v~~lv~~l~ 180 (263)
T cd07943 141 EELAEQAKLMES-YGADCVYVTDSAGAMLPDDVRERVRALR 180 (263)
T ss_pred HHHHHHHHHHHH-cCCCEEEEcCCCCCcCHHHHHHHHHHHH
Confidence 567777777776 99999887 7777888887777765543
No 236
>PRK14012 cysteine desulfurase; Provisional
Probab=38.30 E-value=40 Score=32.00 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEec
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
...|...+++++.+.||++|+.||+|-+-
T Consensus 155 n~tG~~~~~~~I~~la~~~g~~vivD~a~ 183 (404)
T PRK14012 155 NEIGVIQDIAAIGEICRERGIIFHVDAAQ 183 (404)
T ss_pred CCccchhhHHHHHHHHHHcCCEEEEEcch
Confidence 55799999999999999999999999974
No 237
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=38.28 E-value=1.4e+02 Score=26.54 Aligned_cols=27 Identities=15% Similarity=0.318 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEE
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADM 37 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~ 37 (350)
|-.=+..+||+=|.++.+.|=.|+|-+
T Consensus 79 P~~~~daeFr~~v~aLnaeGkavllsL 105 (332)
T COG3469 79 PYNDPDAEFRAQVGALNAEGKAVLLSL 105 (332)
T ss_pred cCCCCHHHHHHHHHHhhccCcEEEEEc
Confidence 444456899999999999999888754
No 238
>cd06596 GH31_CPE1046 CPE1046 is an uncharacterized Clostridium perfringens protein with a glycosyl hydrolase family 31 (GH31) domain. The domain architecture of CPE1046 and its orthologs includes a C-terminal fibronectin type 3 (FN3) domain and a coagulation factor 5/8 type C domain in addition to the GH31 domain. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=38.22 E-value=36 Score=30.36 Aligned_cols=32 Identities=22% Similarity=0.423 Sum_probs=28.3
Q ss_pred CCCcccCCCCCCCCC-HHHHHHHHHHHHHCCCEE
Q 018833 1 MPGRLYDLDASKYGS-QADLKSLIQAFRQKGIKC 33 (350)
Q Consensus 1 ~p~d~~~id~~~~Gt-~~d~~~lv~~aH~~Gi~V 33 (350)
||..++-++ --+|. -++|+.+++.||++|++.
T Consensus 59 ~plgw~lpn-dgyg~~y~~l~~~~~~~~~~g~~~ 91 (261)
T cd06596 59 MPLGWMLPN-DGYGCGYENLKEVVDYLHANGVET 91 (261)
T ss_pred CCceeeccC-CCCcchHHHHHHHHHHHHHcCCcc
Confidence 788888888 88888 689999999999999864
No 239
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=38.10 E-value=28 Score=32.71 Aligned_cols=29 Identities=10% Similarity=0.117 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 12 KYGSQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 12 ~~Gt~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
..|+..+++++++.||++|+.||+|-+-.
T Consensus 161 ~~g~~~~~~~i~~~a~~~gi~vivD~a~~ 189 (363)
T TIGR01437 161 VQKSMLSVEDAAQVAQEHNLPLIVDAAAE 189 (363)
T ss_pred CcCCcCCHHHHHHHHHHcCCeEEEECCCC
Confidence 46777889999999999999999999753
No 240
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=37.91 E-value=43 Score=30.85 Aligned_cols=30 Identities=27% Similarity=0.460 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 018833 101 LNPRVQKELSDWMNWLKTEIGFDGWRFDFV 130 (350)
Q Consensus 101 ~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a 130 (350)
.++..|+.+++.+..|++++|.||+-+|--
T Consensus 87 ~~~~~r~~fi~~i~~~~~~~~~DGidiDwE 116 (334)
T smart00636 87 SDPASRKKFIDSIVSFLKKYGFDGIDIDWE 116 (334)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEECCc
Confidence 468889999988887777899999999953
No 241
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=37.81 E-value=37 Score=33.00 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEe
Q 018833 16 QADLKSLIQAFRQKGIKCLADMV 38 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V 38 (350)
+++++++.+-|+++||+||+|-.
T Consensus 197 ~~~m~~I~elA~~~Gl~Vi~DaA 219 (460)
T PRK13237 197 MANMRAVRELCDKHGIKVFFDAT 219 (460)
T ss_pred HHhHHHHHHHHHHcCCEEEEECc
Confidence 78999999999999999999974
No 242
>PRK07324 transaminase; Validated
Probab=37.78 E-value=44 Score=31.38 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVINHR 42 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~NH~ 42 (350)
+.++++++++.|+++|+.||+|-++.+.
T Consensus 171 ~~~~l~~i~~~a~~~~~~ii~De~y~~l 198 (373)
T PRK07324 171 DRAYLEEIVEIARSVDAYVLSDEVYRPL 198 (373)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEcccccc
Confidence 5789999999999999999999998654
No 243
>PLN00175 aminotransferase family protein; Provisional
Probab=37.68 E-value=43 Score=32.03 Aligned_cols=28 Identities=11% Similarity=0.281 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
.++++++++.|+++|+-||.|-++.+..
T Consensus 206 ~~~l~~l~~~a~~~~~~ii~De~Y~~l~ 233 (413)
T PLN00175 206 REELELIASLCKENDVLAFTDEVYDKLA 233 (413)
T ss_pred HHHHHHHHHHHHHcCcEEEEecccCccc
Confidence 6899999999999999999999998775
No 244
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=37.54 E-value=44 Score=31.72 Aligned_cols=32 Identities=28% Similarity=0.463 Sum_probs=27.3
Q ss_pred CCCC---HHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 12 KYGS---QADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 12 ~~Gt---~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
..|+ .++++++++.|+++|+-||.|-++.+..
T Consensus 181 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~ 215 (403)
T TIGR01265 181 PCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMV 215 (403)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccc
Confidence 4555 4889999999999999999999987664
No 245
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=37.52 E-value=1.1e+02 Score=26.96 Aligned_cols=49 Identities=14% Similarity=0.241 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhcCCCeEEecc-cCCCCHHHHHHHHHhcCCC-c-EEEeec
Q 018833 106 QKELSDWMNWLKTEIGFDGWRFDF-VKGYAPSITKVYMENTSPD-F-AVGEKW 155 (350)
Q Consensus 106 ~~~l~~~~~~w~~~~gvDGfR~D~-a~~~~~~~~~~~~~~~~p~-~-~~~E~~ 155 (350)
+..+.+++.+..+ +|+|..-+.. .-.++.+.+.++++.++.. | ++.|+-
T Consensus 83 q~~~~~yl~~~k~-lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKE-LGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHH-CT-SEEEE--SSS---HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHH-cCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEEeeccc
Confidence 3455666666665 9999999865 3667888888888887763 5 889985
No 246
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=37.51 E-value=30 Score=33.14 Aligned_cols=30 Identities=20% Similarity=0.186 Sum_probs=27.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
...|...+++++++.||++|+.||+|-++-
T Consensus 156 NPtG~v~dl~~I~~la~~~gi~vIvD~a~a 185 (405)
T PRK08776 156 NPLLRITDLRFVIEAAHKVGALTVVDNTFL 185 (405)
T ss_pred CCCCccCCHHHHHHHHHHcCCEEEEECCCc
Confidence 567888999999999999999999999874
No 247
>PRK05367 glycine dehydrogenase; Provisional
Probab=37.49 E-value=25 Score=37.69 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=27.4
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 10 ASKYGSQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 10 ~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
|..+|..++++++++.||++|.-+++|..++
T Consensus 215 p~~~G~i~d~~~i~~~ah~~Gal~~vda~~~ 245 (954)
T PRK05367 215 PGTSGEVRDYTALIAAAHARGALVAVAADLL 245 (954)
T ss_pred CCCCeeeccHHHHHHHHHHcCCEEEEEehhh
Confidence 4688999999999999999999999987553
No 248
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=37.45 E-value=29 Score=32.47 Aligned_cols=29 Identities=31% Similarity=0.286 Sum_probs=25.8
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEec
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
..-|+.++++++++.||++|+-||+|-+.
T Consensus 179 ~~~G~~~~l~~i~~ia~~~~~~li~De~~ 207 (385)
T PRK05958 179 SMDGDLAPLAELVALARRHGAWLLVDEAH 207 (385)
T ss_pred cCCCCcCCHHHHHHHHHHhCCEEEEECcc
Confidence 45577888999999999999999999986
No 249
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=37.16 E-value=42 Score=30.83 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC
Q 018833 102 NPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA 134 (350)
Q Consensus 102 n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~ 134 (350)
++.-|+.+++.+.-+++++|+||+-+|-=....
T Consensus 96 ~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~ 128 (343)
T PF00704_consen 96 NPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSS 128 (343)
T ss_dssp SHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTS
T ss_pred cHHHHHHHHHhhhhhhcccCcceeeeeeeeccc
Confidence 577888999988888888999999999754433
No 250
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=37.13 E-value=33 Score=32.34 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccCCCCCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVINHRTAER 46 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~ 46 (350)
|.+-|+++.+.||++||=||-|=|+.|+-..+
T Consensus 217 s~~HL~kiae~A~klgi~vIaDEVY~~~vfg~ 248 (447)
T KOG0259|consen 217 SEDHLKKIAETAKKLGIMVIADEVYGHTVFGD 248 (447)
T ss_pred cHHHHHHHHHHHHHhCCeEEehhhcceeecCC
Confidence 37889999999999999999999999987543
No 251
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=37.08 E-value=17 Score=33.98 Aligned_cols=32 Identities=9% Similarity=0.219 Sum_probs=27.1
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEe
Q 018833 6 YDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 38 (350)
Q Consensus 6 ~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V 38 (350)
..++ ..-|...+++++.+.||++|+-+++|.+
T Consensus 146 ~~~~-~~tG~~~pi~~I~~~~~~~~~~~~vD~~ 177 (371)
T PF00266_consen 146 SHVE-NSTGVRNPIEEIAKLAHEYGALLVVDAA 177 (371)
T ss_dssp ESBE-TTTTBBSSHHHHHHHHHHTTSEEEEE-T
T ss_pred eccc-ccccEEeeeceehhhhhccCCceeEech
Confidence 3455 6778888999999999999999999997
No 252
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=36.97 E-value=1.8e+02 Score=25.59 Aligned_cols=50 Identities=12% Similarity=0.163 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEeccc-CCCCHHHHHHHHHhcCC-Cc-EEEeec
Q 018833 105 VQKELSDWMNWLKTEIGFDGWRFDFV-KGYAPSITKVYMENTSP-DF-AVGEKW 155 (350)
Q Consensus 105 v~~~l~~~~~~w~~~~gvDGfR~D~a-~~~~~~~~~~~~~~~~p-~~-~~~E~~ 155 (350)
.+..+.+++++..+ +|+|..-+-.. -.+|.+.+.++++.++. -| .+.|+-
T Consensus 69 ~q~~~~~Yl~~~k~-lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~EvG 121 (237)
T TIGR03849 69 SKGKFDEYLNECDE-LGFEAVEISDGSMEISLEERCNLIERAKDNGFMVLSEVG 121 (237)
T ss_pred HhhhHHHHHHHHHH-cCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEecccc
Confidence 44567777777776 99999988654 66899999888887764 33 777753
No 253
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=36.96 E-value=2.7e+02 Score=25.15 Aligned_cols=38 Identities=13% Similarity=0.204 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhc
Q 018833 107 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMENT 145 (350)
Q Consensus 107 ~~l~~~~~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~ 145 (350)
+++.+.++.+.+ .|+|.+++ |.+....+.-..++++.+
T Consensus 147 ~~~~~~~~~~~~-~G~~~i~l~DT~G~~~P~~v~~l~~~l 185 (280)
T cd07945 147 DYVFQLVDFLSD-LPIKRIMLPDTLGILSPFETYTYISDM 185 (280)
T ss_pred HHHHHHHHHHHH-cCCCEEEecCCCCCCCHHHHHHHHHHH
Confidence 478888888887 99999886 777777777666665544
No 254
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=36.83 E-value=38 Score=25.98 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEE
Q 018833 12 KYGSQADLKSLIQAFRQKGIKCLA 35 (350)
Q Consensus 12 ~~Gt~~d~~~lv~~aH~~Gi~Vil 35 (350)
.=|...+..+.++.|+++|.+||.
T Consensus 55 ~sG~t~e~~~~~~~a~~~g~~vi~ 78 (126)
T cd05008 55 QSGETADTLAALRLAKEKGAKTVA 78 (126)
T ss_pred CCcCCHHHHHHHHHHHHcCCeEEE
Confidence 346677899999999999999874
No 255
>PRK07568 aspartate aminotransferase; Provisional
Probab=36.68 E-value=39 Score=31.87 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
+.++++++++.||++|+.||+|-++....
T Consensus 180 ~~~~~~~i~~~~~~~~~~ii~De~y~~~~ 208 (397)
T PRK07568 180 TKEELEMLAEIAKKHDLFLISDEVYREFV 208 (397)
T ss_pred CHHHHHHHHHHHHHCCcEEEEeccchhcc
Confidence 46899999999999999999999987654
No 256
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=36.65 E-value=36 Score=30.59 Aligned_cols=34 Identities=29% Similarity=0.489 Sum_probs=29.7
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEec
Q 018833 5 LYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 5 ~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
.+.+| ..||++.|-+...+-||+.|+-++|.-.+
T Consensus 162 lTh~D-g~YGNl~Dakkva~ic~e~gvPlllN~AY 195 (382)
T COG1103 162 LTHVD-GEYGNLADAKKVAKICREYGVPLLLNCAY 195 (382)
T ss_pred EeccC-CCcCCchhhHHHHHHHHHcCCceEeecce
Confidence 35688 99999999999999999999999986543
No 257
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=36.46 E-value=39 Score=31.72 Aligned_cols=33 Identities=9% Similarity=-0.001 Sum_probs=29.2
Q ss_pred CcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 018833 3 GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 35 (350)
Q Consensus 3 ~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~Vil 35 (350)
.|..++|+.+.|+..+.+++++.|+++||+++.
T Consensus 238 ~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~ 270 (361)
T cd03322 238 IDYIRTTVSHAGGITPARKIADLASLYGVRTGW 270 (361)
T ss_pred CCEEecCccccCCHHHHHHHHHHHHHcCCeeec
Confidence 567788866889999999999999999999974
No 258
>PRK07777 aminotransferase; Validated
Probab=36.29 E-value=46 Score=31.31 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
.+++++|++.|+++|+.||.|-++.+..
T Consensus 178 ~~~~~~l~~~~~~~~~~li~De~y~~~~ 205 (387)
T PRK07777 178 AAELAAIAELAVEHDLLVITDEVYEHLV 205 (387)
T ss_pred HHHHHHHHHHHHhcCcEEEEeccchhcc
Confidence 6899999999999999999999987664
No 259
>PRK15447 putative protease; Provisional
Probab=36.04 E-value=41 Score=30.75 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHHCCCEEEE
Q 018833 15 SQADLKSLIQAFRQKGIKCLA 35 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~Vil 35 (350)
+.+++++.|+.||++|.+|++
T Consensus 46 ~~~~l~e~v~~~~~~gkkvyv 66 (301)
T PRK15447 46 KVGDWLELAERLAAAGKEVVL 66 (301)
T ss_pred CHHHHHHHHHHHHHcCCEEEE
Confidence 689999999999999999998
No 260
>PTZ00376 aspartate aminotransferase; Provisional
Probab=36.03 E-value=44 Score=31.81 Aligned_cols=30 Identities=13% Similarity=0.254 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccCCCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVINHRTA 44 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~NH~s~ 44 (350)
+.++++++++.|+++|+-||.|-++.+...
T Consensus 194 s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~ 223 (404)
T PTZ00376 194 TEEQWKEIADVMKRKNLIPFFDMAYQGFAS 223 (404)
T ss_pred CHHHHHHHHHHHHhCCcEEEEehhhcCccC
Confidence 479999999999999999999999988764
No 261
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=36.00 E-value=32 Score=33.25 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=25.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEec
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
...|...|++++.+.||++|+.||+|-+.
T Consensus 160 np~g~v~Di~~I~~la~~~gi~livD~t~ 188 (433)
T PRK08134 160 NPGLEVLDIPTVAAIAHEAGVPLLVDSTF 188 (433)
T ss_pred cccCcccCHHHHHHHHHHcCCEEEEECCC
Confidence 44566789999999999999999999774
No 262
>PRK07671 cystathionine beta-lyase; Provisional
Probab=35.75 E-value=35 Score=32.28 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=26.7
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
...|...+++++++.||++|+.||+|-++.
T Consensus 145 NPtg~~~dl~~I~~la~~~g~~lvvD~a~~ 174 (377)
T PRK07671 145 NPLLKITDIKKISTIAKEKGLLTIVDNTFM 174 (377)
T ss_pred CCCCcccCHHHHHHHHHHcCCEEEEECCCC
Confidence 457888999999999999999999998764
No 263
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=35.62 E-value=43 Score=29.27 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHCCCEEEE
Q 018833 16 QADLKSLIQAFRQKGIKCLA 35 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~Vil 35 (350)
.+.++++|++||++|++|.+
T Consensus 184 ~~~l~~~v~~a~~~Gl~vr~ 203 (228)
T cd08577 184 KEKLKSIIDKAHARGKKVRF 203 (228)
T ss_pred HHHHHHHHHHHHHCCCEEEE
Confidence 57789999999999999865
No 264
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=35.45 E-value=2.8e+02 Score=25.99 Aligned_cols=38 Identities=13% Similarity=0.080 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhc
Q 018833 107 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMENT 145 (350)
Q Consensus 107 ~~l~~~~~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~ 145 (350)
+++.+.++-+.+ .|+|-+++ |.+....+.-..++++.+
T Consensus 197 ~~l~~~~~~~~~-~Gad~I~l~DT~G~a~P~~v~~lv~~l 235 (347)
T PLN02746 197 SKVAYVAKELYD-MGCYEISLGDTIGVGTPGTVVPMLEAV 235 (347)
T ss_pred HHHHHHHHHHHH-cCCCEEEecCCcCCcCHHHHHHHHHHH
Confidence 578888888887 99998876 787777777677775554
No 265
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=35.38 E-value=34 Score=32.73 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
...|...+++++++.||++|+.||+|-+.-
T Consensus 166 Nptg~v~dl~~I~~la~~~g~~vivD~a~a 195 (403)
T PRK07810 166 NPMQSLVDIAAVSELAHAAGAKVVLDNVFA 195 (403)
T ss_pred CCCCeecCHHHHHHHHHHcCCEEEEECCCC
Confidence 567888899999999999999999999864
No 266
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=35.38 E-value=35 Score=32.17 Aligned_cols=29 Identities=17% Similarity=0.082 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEec
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
..-|...+++++++.||++|+.||+|-+.
T Consensus 181 ~~tG~~~~l~~i~~la~~~~~~li~De~~ 209 (393)
T TIGR01822 181 SMDGVIAPLDEICDLADKYDALVMVDECH 209 (393)
T ss_pred cCCCCcCCHHHHHHHHHHcCCEEEEECCc
Confidence 56688889999999999999999999995
No 267
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=35.34 E-value=35 Score=30.85 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEec
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
+|-.+++|++|++. |.|+||+--
T Consensus 136 KE~vR~~I~~A~kV-IAIVMD~FT 158 (284)
T PF07894_consen 136 KEVVRRMIQQAQKV-IAIVMDVFT 158 (284)
T ss_pred HHHHHHHHHHhcce-eEEEeeccc
Confidence 78999999999988 999999854
No 268
>PLN02656 tyrosine transaminase
Probab=35.29 E-value=42 Score=31.99 Aligned_cols=28 Identities=25% Similarity=0.285 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
.++++++++.|+++|+-||.|-++.+..
T Consensus 188 ~~~~~~i~~~a~~~~~~ii~De~y~~~~ 215 (409)
T PLN02656 188 YQHLKKIAETAEKLKILVIADEVYGHLA 215 (409)
T ss_pred HHHHHHHHHHHHHcCCEEEEehhhhhcc
Confidence 5899999999999999999999998775
No 269
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=35.24 E-value=28 Score=33.95 Aligned_cols=23 Identities=17% Similarity=0.460 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEE
Q 018833 15 SQADLKSLIQAFRQKGIKCLADM 37 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~ 37 (350)
...+++++++.||++|+.||+|.
T Consensus 230 ~~~dl~~I~~la~~~g~~vivD~ 252 (454)
T TIGR00474 230 EEVSIAELVALGREHGLPVMEDL 252 (454)
T ss_pred CCCCHHHHHHHHHHcCCeEEEEC
Confidence 46789999999999999999994
No 270
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=35.23 E-value=35 Score=32.09 Aligned_cols=30 Identities=17% Similarity=0.058 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
+..|+.++++++++.|+++|+-||.|=+..
T Consensus 185 ~~~G~~~~~~~l~~la~~~~~~li~De~~~ 214 (397)
T PRK06939 185 SMDGDIAPLPEICDLADKYDALVMVDDSHA 214 (397)
T ss_pred CCCCCcCCHHHHHHHHHHhCCEEEEECccc
Confidence 456788999999999999999999999974
No 271
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=35.22 E-value=34 Score=33.00 Aligned_cols=26 Identities=15% Similarity=0.344 Sum_probs=20.7
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEE
Q 018833 10 ASKYGSQADLKSLIQAFRQKGIKCLA 35 (350)
Q Consensus 10 ~~~~Gt~~d~~~lv~~aH~~Gi~Vil 35 (350)
|..+|..|+++++.+.+|++|.-+|+
T Consensus 206 Pn~~G~~ed~~~i~~~~h~~gal~~~ 231 (429)
T PF02347_consen 206 PNTFGVFEDIKEIADIAHAAGALVIV 231 (429)
T ss_dssp S-TTSB--THHHHHHHHHHTT-EEEE
T ss_pred CCCCceEeeHHHHHHHHHHcCCEEEE
Confidence 67899999999999999999999886
No 272
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=35.12 E-value=29 Score=32.00 Aligned_cols=28 Identities=21% Similarity=0.154 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEec
Q 018833 12 KYGSQADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 12 ~~Gt~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
.-|+..+++++++.||++|+-||+|-+.
T Consensus 158 ~~G~~~~~~~i~~l~~~~~~~li~De~~ 185 (360)
T TIGR00858 158 MDGDIAPLPQLVALAERYGAWLMVDDAH 185 (360)
T ss_pred CCCCCcCHHHHHHHHHHcCcEEEEECcc
Confidence 4566788999999999999999999985
No 273
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=35.03 E-value=45 Score=32.37 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEe
Q 018833 16 QADLKSLIQAFRQKGIKCLADMV 38 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V 38 (350)
+++++++.+-|+++||.|++|-.
T Consensus 190 ~~~l~~I~elA~~~Gl~vi~DaA 212 (450)
T TIGR02618 190 MANMREVRELCEAHGIKVFYDAT 212 (450)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcc
Confidence 58999999999999999999974
No 274
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=34.84 E-value=52 Score=25.76 Aligned_cols=21 Identities=10% Similarity=0.325 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHHHCCCEEEE
Q 018833 15 SQADLKSLIQAFRQKGIKCLA 35 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~Vil 35 (350)
+.+|++++|+.|+++|++|.+
T Consensus 9 s~~ev~~~v~~a~~~~~~v~~ 29 (139)
T PF01565_consen 9 SVEEVQAIVKFANENGVPVRV 29 (139)
T ss_dssp SHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEE
Confidence 789999999999999999875
No 275
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=34.80 E-value=47 Score=31.06 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEecc
Q 018833 101 LNPRVQKELSDWMNWLKTEIGFDGWRFDF 129 (350)
Q Consensus 101 ~n~~v~~~l~~~~~~w~~~~gvDGfR~D~ 129 (350)
.++..|+.+++.+..|++++|+||+-+|-
T Consensus 92 ~~~~~r~~fi~~iv~~l~~~~~DGidiDw 120 (362)
T cd02872 92 ASPENRKTFIKSAIAFLRKYGFDGLDLDW 120 (362)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeeeee
Confidence 46788999998888788889999999994
No 276
>PRK14017 galactonate dehydratase; Provisional
Probab=34.78 E-value=47 Score=31.49 Aligned_cols=33 Identities=9% Similarity=0.085 Sum_probs=28.8
Q ss_pred CcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 018833 3 GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 35 (350)
Q Consensus 3 ~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~Vil 35 (350)
.|..++|+.+.|+..+.+++.+.|+++||+++.
T Consensus 252 ~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~ 284 (382)
T PRK14017 252 VDIIQPDLSHAGGITECRKIAAMAEAYDVALAP 284 (382)
T ss_pred CCeEecCccccCCHHHHHHHHHHHHHcCCeEee
Confidence 456677777899999999999999999999875
No 277
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=34.75 E-value=35 Score=32.22 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=26.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEEEEe
Q 018833 8 LDASKYGSQADLKSLIQAFRQKGIKCLADMV 38 (350)
Q Consensus 8 id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V 38 (350)
+. ..-|...+++++++.||++|+.||+|-+
T Consensus 165 ~~-n~tG~~~~~~~i~~~~~~~~~~~ivD~a 194 (397)
T TIGR01976 165 AS-NTLGSIVDLAAITELVHAAGALVVVDAV 194 (397)
T ss_pred CC-CCCCccCCHHHHHHHHHHcCCEEEEehh
Confidence 45 6788888999999999999999999996
No 278
>PRK08064 cystathionine beta-lyase; Provisional
Probab=34.58 E-value=38 Score=32.20 Aligned_cols=29 Identities=10% Similarity=0.203 Sum_probs=25.9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEec
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
...|...+++++++.||++|+.||+|-..
T Consensus 149 NptG~~~dl~~I~~la~~~g~~vvvD~a~ 177 (390)
T PRK08064 149 NPLLKVTDIRGVVKLAKAIGCLTFVDNTF 177 (390)
T ss_pred CCCcEeccHHHHHHHHHHcCCEEEEECCC
Confidence 56788899999999999999999999763
No 279
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=34.53 E-value=37 Score=32.28 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
...|...+++++++.||++|+.||+|-+..
T Consensus 157 NptG~v~dl~~I~~la~~~gi~livD~t~~ 186 (390)
T PRK08133 157 NPLTELADIAALAEIAHAAGALLVVDNCFC 186 (390)
T ss_pred CCCCCcCCHHHHHHHHHHcCCEEEEECCCc
Confidence 567888899999999999999999999853
No 280
>PRK06348 aspartate aminotransferase; Provisional
Probab=34.51 E-value=48 Score=31.20 Aligned_cols=29 Identities=14% Similarity=0.158 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
+.+++++|++.|+++|+-||.|-++.+..
T Consensus 180 s~~~~~~l~~~a~~~~~~ii~De~y~~~~ 208 (384)
T PRK06348 180 SKETLEEIAKIAIEYDLFIISDEVYDGFS 208 (384)
T ss_pred CHHHHHHHHHHHHHCCeEEEEecccccce
Confidence 47899999999999999999999988764
No 281
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=34.48 E-value=51 Score=30.68 Aligned_cols=29 Identities=10% Similarity=0.104 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
+.++++++++.|+++|+.||+|-++-+..
T Consensus 160 ~~~~~~~i~~~a~~~~~~ii~De~y~~~~ 188 (356)
T PRK08056 160 ERQLLQAIAERCKSLNIALILDEAFIDFI 188 (356)
T ss_pred CHHHHHHHHHHHHhcCCEEEEecchhccC
Confidence 36889999999999999999999986553
No 282
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=34.47 E-value=46 Score=25.56 Aligned_cols=24 Identities=13% Similarity=0.256 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEE
Q 018833 12 KYGSQADLKSLIQAFRQKGIKCLA 35 (350)
Q Consensus 12 ~~Gt~~d~~~lv~~aH~~Gi~Vil 35 (350)
.-|...+..+.++.|+++|++||.
T Consensus 56 ~SG~t~~~~~~~~~a~~~g~~vi~ 79 (120)
T cd05710 56 HSGNTKETVAAAKFAKEKGATVIG 79 (120)
T ss_pred CCCCChHHHHHHHHHHHcCCeEEE
Confidence 457788999999999999999887
No 283
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=34.44 E-value=47 Score=31.00 Aligned_cols=33 Identities=15% Similarity=0.270 Sum_probs=28.8
Q ss_pred CcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 018833 3 GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 35 (350)
Q Consensus 3 ~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~Vil 35 (350)
.|+-.+++.+.|+..+.+++++.|+++||+|++
T Consensus 264 ~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~ 296 (357)
T cd03316 264 VDIIQPDVTKVGGITEAKKIAALAEAHGVRVAP 296 (357)
T ss_pred CCEEecCccccCCHHHHHHHHHHHHHcCCeEec
Confidence 466777777889999999999999999999875
No 284
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=34.34 E-value=36 Score=32.37 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEec
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
...|...+++++.+.||++|+.|++|-+-
T Consensus 153 n~tG~~~~~~~I~~l~~~~g~~livD~a~ 181 (402)
T TIGR02006 153 NEIGVIQDIAAIGEICRERKVFFHVDAAQ 181 (402)
T ss_pred cCceecccHHHHHHHHHHcCCEEEEEcch
Confidence 56789999999999999999999999984
No 285
>PRK06108 aspartate aminotransferase; Provisional
Probab=34.12 E-value=43 Score=31.34 Aligned_cols=29 Identities=28% Similarity=0.441 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
+.++++++++.|+++|+-||+|-++-+..
T Consensus 176 ~~~~~~~l~~~~~~~~~~li~De~y~~~~ 204 (382)
T PRK06108 176 SRDDLRAILAHCRRHGLWIVADEVYERLY 204 (382)
T ss_pred CHHHHHHHHHHHHHCCcEEEEehhhhhhc
Confidence 68999999999999999999999877664
No 286
>PRK07503 methionine gamma-lyase; Provisional
Probab=34.03 E-value=36 Score=32.56 Aligned_cols=30 Identities=13% Similarity=0.131 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
...|...+++++++.||++|+.||+|-..-
T Consensus 161 NPtG~~~di~~I~~la~~~gi~lIvD~a~a 190 (403)
T PRK07503 161 NPNMRLVDIAAVAEIAHGAGAKVVVDNTYC 190 (403)
T ss_pred CCCCeeeCHHHHHHHHHHcCCEEEEECCCc
Confidence 556888899999999999999999999864
No 287
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=34.00 E-value=32 Score=32.58 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=28.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEec
Q 018833 7 DLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 7 ~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
.++ ..-|+..+++++++.||++|+.|++|-+.
T Consensus 165 ~~~-n~tG~~~~~~~i~~~~~~~~~~~ivD~a~ 196 (398)
T TIGR03392 165 QMS-NVTGGCPDLARAITLAHQYGAVVVVDGAQ 196 (398)
T ss_pred Ccc-ccccccCCHHHHHHHHHHcCCEEEEEhhh
Confidence 345 67888899999999999999999999986
No 288
>PRK09082 methionine aminotransferase; Validated
Probab=33.91 E-value=41 Score=31.71 Aligned_cols=33 Identities=33% Similarity=0.414 Sum_probs=28.3
Q ss_pred CCCC---CHHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 11 SKYG---SQADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 11 ~~~G---t~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
...| +.++++++++-|+++|+.||.|-++.+..
T Consensus 174 NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~ 209 (386)
T PRK09082 174 NPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIV 209 (386)
T ss_pred CCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhc
Confidence 4556 46999999999999999999999987664
No 289
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=33.83 E-value=33 Score=31.49 Aligned_cols=31 Identities=10% Similarity=0.088 Sum_probs=27.7
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEeccC
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVINH 41 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH 41 (350)
...|..++++++++.||++|+.|++|-+...
T Consensus 159 ~~tG~~~~~~~i~~~~~~~~~~l~vD~a~~~ 189 (345)
T cd06450 159 TDTGAIDPLEEIADLAEKYDLWLHVDAAYGG 189 (345)
T ss_pred CCCCCCCCHHHHHHHHHHhCCeEEEechhhH
Confidence 5688999999999999999999999998653
No 290
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=33.70 E-value=48 Score=32.36 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEE
Q 018833 15 SQADLKSLIQAFRQKGIKCLADM 37 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~ 37 (350)
++++++++.+-|+++|+.||.|-
T Consensus 196 s~~~l~~I~~ia~~~gi~li~Da 218 (460)
T PRK13238 196 SMANLRAVYEIAKKYGIPVVIDA 218 (460)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEC
Confidence 58999999999999999999997
No 291
>PRK05764 aspartate aminotransferase; Provisional
Probab=33.69 E-value=46 Score=31.33 Aligned_cols=27 Identities=15% Similarity=0.248 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHR 42 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~ 42 (350)
.++++++++.||++|+.||+|-++...
T Consensus 183 ~~~~~~l~~~a~~~~~~ii~De~y~~~ 209 (393)
T PRK05764 183 PEELEAIADVAVEHDIWVLSDEIYEKL 209 (393)
T ss_pred HHHHHHHHHHHHHCCcEEEEeccccce
Confidence 689999999999999999999876543
No 292
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=33.68 E-value=46 Score=27.51 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEE
Q 018833 12 KYGSQADLKSLIQAFRQKGIKCLA 35 (350)
Q Consensus 12 ~~Gt~~d~~~lv~~aH~~Gi~Vil 35 (350)
.-|...+..++++.||++|++||+
T Consensus 81 ~sG~t~~~i~~~~~ak~~g~~ii~ 104 (179)
T TIGR03127 81 GSGETESLVTVAKKAKEIGATVAA 104 (179)
T ss_pred CCCCcHHHHHHHHHHHHCCCeEEE
Confidence 446778999999999999999975
No 293
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=33.57 E-value=41 Score=32.00 Aligned_cols=30 Identities=13% Similarity=0.246 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
...|...+++++++.||++|+.||+|-..-
T Consensus 155 Np~G~v~dl~~I~~la~~~gi~livD~a~a 184 (391)
T TIGR01328 155 NPTMKLIDMERVCRDAHSQGVKVIVDNTFA 184 (391)
T ss_pred CCCCcccCHHHHHHHHHHcCCEEEEECCCc
Confidence 457888899999999999999999998854
No 294
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=33.50 E-value=36 Score=31.78 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=25.7
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEec
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
...|...+++++++.||++|+.|++|.+.
T Consensus 150 ~~tG~~~~~~~i~~~~~~~~~~li~D~a~ 178 (373)
T cd06453 150 NVLGTINPVKEIGEIAHEAGVPVLVDGAQ 178 (373)
T ss_pred cccCCcCCHHHHHHHHHHcCCEEEEEhhh
Confidence 55788889999999999999999999763
No 295
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=33.46 E-value=37 Score=31.49 Aligned_cols=33 Identities=12% Similarity=0.197 Sum_probs=28.3
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEe--ccCCC
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMV--INHRT 43 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V--~NH~s 43 (350)
..-|...+++++++.||++|+.||+|-+ +.+..
T Consensus 149 n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~~ 183 (353)
T TIGR03235 149 NETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKIT 183 (353)
T ss_pred CCceeccCHHHHHHHHHHcCCEEEEEchhhcCCcc
Confidence 5678888999999999999999999997 55543
No 296
>PRK08175 aminotransferase; Validated
Probab=33.35 E-value=46 Score=31.48 Aligned_cols=29 Identities=3% Similarity=0.087 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
+.++++++++.|+++|+.||.|-++.+..
T Consensus 182 ~~~~~~~i~~~a~~~~i~ii~De~y~~l~ 210 (395)
T PRK08175 182 ELEFFEKVVALAKRYDVLVVHDLAYADIV 210 (395)
T ss_pred CHHHHHHHHHHHHHcCcEEEEecchHhhc
Confidence 58999999999999999999998886543
No 297
>PRK06225 aspartate aminotransferase; Provisional
Probab=33.35 E-value=48 Score=31.13 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
.++++++++.|+++|+.||.|-++.
T Consensus 176 ~~~~~~i~~~a~~~~~~ii~De~y~ 200 (380)
T PRK06225 176 EEEIKEFAEIARDNDAFLLHDCTYR 200 (380)
T ss_pred HHHHHHHHHHHHHCCcEEEEehhHH
Confidence 7899999999999999999998764
No 298
>PRK07582 cystathionine gamma-lyase; Validated
Probab=33.20 E-value=43 Score=31.47 Aligned_cols=29 Identities=21% Similarity=0.116 Sum_probs=25.3
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEec
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
..-|...+++++++.||++|+.||+|-+.
T Consensus 143 NPtg~v~di~~I~~~a~~~g~~lvVD~t~ 171 (366)
T PRK07582 143 NPGLDVCDLAALAAAAHAAGALLVVDNTT 171 (366)
T ss_pred CCCCCccCHHHHHHHHHHcCCEEEEECCC
Confidence 34567789999999999999999999975
No 299
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=33.16 E-value=38 Score=32.26 Aligned_cols=30 Identities=13% Similarity=0.181 Sum_probs=26.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
..+...-|+.++++-||++|+-||+|=.+-
T Consensus 173 NPll~v~DI~~l~~la~~~g~~vvVDnTf~ 202 (409)
T KOG0053|consen 173 NPLLKVPDIEKLARLAHKYGFLVVVDNTFG 202 (409)
T ss_pred CCccccccHHHHHHHHhhCCCEEEEeCCcC
Confidence 567778899999999999999999996653
No 300
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=33.05 E-value=53 Score=34.60 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
++.|++||++++++||+||-=+-|.+.+
T Consensus 807 ~~~l~~~i~~~~~~~~~~ig~~~p~~p~ 834 (912)
T TIGR02171 807 MNSLKAFIDETAKKGVKVIGTIFPQSPG 834 (912)
T ss_pred HHHHHHHHHHHHhCCCEEEEEECCCCCC
Confidence 6899999999999999999988887655
No 301
>PRK05957 aspartate aminotransferase; Provisional
Probab=32.97 E-value=55 Score=30.93 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=28.3
Q ss_pred CCCC---CHHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 11 SKYG---SQADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 11 ~~~G---t~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
...| +.++++++++.||++|+-||.|-++.+..
T Consensus 171 NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~ 206 (389)
T PRK05957 171 NPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFT 206 (389)
T ss_pred CCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhcc
Confidence 3456 47899999999999999999999987664
No 302
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=32.94 E-value=47 Score=30.89 Aligned_cols=29 Identities=17% Similarity=0.231 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
+.++++++++.|+++|+-||.|=++.+..
T Consensus 160 ~~~~~~~i~~~a~~~~~~ii~De~y~~~~ 188 (357)
T TIGR03539 160 SVDELRAIVAWARERGAVVASDECYLELG 188 (357)
T ss_pred CHHHHHHHHHHHHHcCeEEEEecchhhhc
Confidence 47899999999999999999999987654
No 303
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=32.89 E-value=32 Score=31.99 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEec
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
...|+..+++++.+.||++|+.|++|-+.
T Consensus 162 ~~tG~~~~l~~I~~l~~~~g~~livD~a~ 190 (371)
T PRK13520 162 TELGQVDPIPELSKIALENGIFLHVDAAF 190 (371)
T ss_pred cCCcccCCHHHHHHHHHHcCCCEEEEecc
Confidence 46799999999999999999999999964
No 304
>TIGR00666 PBP4 D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family. In E. coli, this protein is known as penicillin binding protein 4 (dacB). A signal sequence is cleaved from a precursor form. The protein is described as periplasmic in E. coli (Gram-negative) and extracellular in Actinomadura R39 (Gram-positive). Unlike some other proteins with similar activity, it does not form transpeptidation. It is not essential for viability. This family is related to class A beta-lactamases.
Probab=32.86 E-value=92 Score=29.10 Aligned_cols=35 Identities=14% Similarity=0.489 Sum_probs=27.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEE-EEEeccCCCCC
Q 018833 9 DASKYGSQADLKSLIQAFRQKGIKCL-ADMVINHRTAE 45 (350)
Q Consensus 9 d~~~~Gt~~d~~~lv~~aH~~Gi~Vi-lD~V~NH~s~~ 45 (350)
| |.|++ ++|.+|++++++.||+-| -|++++-.-.+
T Consensus 64 D-P~L~~-~~L~~la~~l~~~Gi~~i~G~v~~D~s~f~ 99 (345)
T TIGR00666 64 D-PTLKR-QDIRNLVATLKKSGVKQIDGNVLVDTSAFS 99 (345)
T ss_pred C-CCcCH-HHHHHHHHHHHHcCCcEEEeeEEEEccccc
Confidence 6 77775 679999999999999977 47888755433
No 305
>PF03711 OKR_DC_1_C: Orn/Lys/Arg decarboxylase, C-terminal domain; InterPro: IPR008286 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 3Q16_C 3N75_A 2X3L_A 2VYC_D.
Probab=32.84 E-value=30 Score=27.62 Aligned_cols=33 Identities=12% Similarity=0.054 Sum_probs=22.9
Q ss_pred CCceeEecCCCCCC---chHHHHHHHHHHHHhcCcc
Q 018833 262 PGTPCIFYDHFFDW---GLKEAISKLAAVRNRNGIN 294 (350)
Q Consensus 262 pG~P~iy~G~~~~w---~l~~~~~~L~~lR~~~~~l 294 (350)
||||+|.-|+.+.- .+.++++.|-+.-++.|-+
T Consensus 87 PGIPll~pGE~it~~~~~~i~yl~~l~~~~~~fpGf 122 (136)
T PF03711_consen 87 PGIPLLVPGERITEETEEIIDYLLALQEFGAHFPGF 122 (136)
T ss_dssp TTS-SB-TTEEB-STTHHHHHHHHHHHHHHTCSTTS
T ss_pred CCCcEECCccccccchHHHHHHHHHHHHhCCcCcCC
Confidence 69999999998844 4677777777777776644
No 306
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=32.81 E-value=33 Score=32.39 Aligned_cols=30 Identities=23% Similarity=0.250 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEeccC
Q 018833 12 KYGSQADLKSLIQAFRQKGIKCLADMVINH 41 (350)
Q Consensus 12 ~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH 41 (350)
.+|...+++++++.|+++|+.||.|-+--+
T Consensus 130 ~~G~~~d~~~i~~~a~~~gi~vi~D~a~a~ 159 (379)
T PRK11658 130 YAGAPADLDAIRAIGERYGIPVIEDAAHAV 159 (379)
T ss_pred CCCCcCCHHHHHHHHHHcCCeEEEECCCcc
Confidence 478899999999999999999999998754
No 307
>PLN02721 threonine aldolase
Probab=32.67 E-value=51 Score=30.36 Aligned_cols=24 Identities=13% Similarity=0.039 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEec
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
.++++++++.||++|+.||+|-..
T Consensus 157 ~~~l~~l~~l~~~~g~~livD~a~ 180 (353)
T PLN02721 157 VEYTDKVGELAKRHGLKLHIDGAR 180 (353)
T ss_pred HHHHHHHHHHHHHcCCEEEEEchh
Confidence 577999999999999999999753
No 308
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=32.46 E-value=42 Score=31.80 Aligned_cols=30 Identities=13% Similarity=0.180 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
...|...+++++++.||++|+.||+|-+.-
T Consensus 145 Nptg~~~di~~I~~la~~~gi~vivD~t~a 174 (380)
T PRK06176 145 NPLLKITDLAQCASVAKDHGLLTIVDNTFA 174 (380)
T ss_pred CCCceecCHHHHHHHHHHcCCEEEEECCcc
Confidence 457778889999999999999999997754
No 309
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=32.40 E-value=67 Score=25.39 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEec
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
-+||+-|++.|++.|++|++=++|
T Consensus 35 y~Dl~l~L~~~k~~g~~~lfVi~P 58 (130)
T PF04914_consen 35 YDDLQLLLDVCKELGIDVLFVIQP 58 (130)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE--
T ss_pred HHHHHHHHHHHHHcCCceEEEecC
Confidence 479999999999999999987766
No 310
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=32.39 E-value=51 Score=31.24 Aligned_cols=28 Identities=11% Similarity=0.266 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
.++++++++.|+++|+.||.|=++.+..
T Consensus 187 ~~~~~~l~~~a~~~~~~ii~De~y~~~~ 214 (401)
T TIGR01264 187 RQHLEEILAVAERQCLPIIADEIYGDMV 214 (401)
T ss_pred HHHHHHHHHHHHHCCCEEEEEhhhhhhc
Confidence 6899999999999999999999998765
No 311
>PLN02368 alanine transaminase
Probab=32.18 E-value=62 Score=30.98 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccCCCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVINHRTA 44 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~NH~s~ 44 (350)
+.++++++++-|+++|+-||.|=++.+...
T Consensus 228 s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y 257 (407)
T PLN02368 228 SEANLREILKFCYQERLVLLGDEVYQQNIY 257 (407)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEcccccccc
Confidence 479999999999999999999999988753
No 312
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=32.13 E-value=60 Score=29.87 Aligned_cols=31 Identities=13% Similarity=0.156 Sum_probs=27.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 8 LDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 8 id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
++ ..+ |.+++.+.++.+|+.||+|.+++.+.
T Consensus 148 in-Kg~-t~~~~~~ai~~~~~~Gi~v~~~~i~G 178 (313)
T TIGR01210 148 IN-KGS-TFEDFIRAAELARKYGAGVKAYLLFK 178 (313)
T ss_pred hC-CCC-CHHHHHHHHHHHHHcCCcEEEEEEec
Confidence 44 444 78999999999999999999999987
No 313
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=32.04 E-value=48 Score=30.98 Aligned_cols=32 Identities=16% Similarity=0.151 Sum_probs=27.7
Q ss_pred CcccCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Q 018833 3 GRLYDLDASKYGSQADLKSLIQAFRQKGIKCL 34 (350)
Q Consensus 3 ~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~Vi 34 (350)
.|.-++|+.+.|+..+.+++++.|+++||+++
T Consensus 251 ~d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~ 282 (352)
T cd03325 251 VDIIQPDISHAGGITELKKIAAMAEAYDVALA 282 (352)
T ss_pred CCEEecCccccCCHHHHHHHHHHHHHcCCcEe
Confidence 35566776689999999999999999999986
No 314
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=32.00 E-value=66 Score=30.33 Aligned_cols=29 Identities=24% Similarity=0.156 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
+.+.+++|++.|+++|+-+|.|=|.-..+
T Consensus 194 ~~~~l~~l~~l~~~~g~~lI~DEv~~g~g 222 (389)
T PRK01278 194 PDEFLKGLRQLCDENGLLLIFDEVQCGMG 222 (389)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 47899999999999999999999986554
No 315
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=31.98 E-value=56 Score=25.23 Aligned_cols=26 Identities=19% Similarity=0.478 Sum_probs=21.7
Q ss_pred HHHHHHHHHHCCCEEEEEEeccCCCC
Q 018833 19 LKSLIQAFRQKGIKCLADMVINHRTA 44 (350)
Q Consensus 19 ~~~lv~~aH~~Gi~VilD~V~NH~s~ 44 (350)
+++|++...+.||++++||=.+=.|.
T Consensus 2 ~e~f~~~l~~~~i~~lVDVR~~P~S~ 27 (122)
T PF04343_consen 2 IERFYDLLKKNGIRVLVDVRLWPRSR 27 (122)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCCC
Confidence 57888899999999999998775554
No 316
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=31.80 E-value=51 Score=31.77 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVINHR 42 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~NH~ 42 (350)
|++||.++|.+||++|.||-.=- ..|.
T Consensus 58 teaeL~~lVa~A~~a~~kirvVg-~gHS 84 (518)
T KOG4730|consen 58 TEAELVELVAAATEAGKKIRVVG-SGHS 84 (518)
T ss_pred CHHHHHHHHHHHHHcCceEEEec-ccCC
Confidence 68999999999999999987543 5553
No 317
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=31.36 E-value=47 Score=32.13 Aligned_cols=29 Identities=17% Similarity=0.322 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEec
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
...|...+++++++.||++|+.||+|-+.
T Consensus 160 NPtG~v~di~~I~~la~~~gi~vIvD~t~ 188 (431)
T PRK08248 160 NPKGDVLDIEAVAAIAHEHGIPLIVDNTF 188 (431)
T ss_pred CCCCcccCHHHHHHHHHHcCCEEEEeCCC
Confidence 56788889999999999999999999875
No 318
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=31.34 E-value=43 Score=31.94 Aligned_cols=30 Identities=17% Similarity=0.171 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
...|..-+++++++.||++|+.||+|-+.-
T Consensus 160 NPtg~v~dl~~I~~la~~~gi~livD~t~a 189 (398)
T PRK08249 160 NPTLKIVDIERLAAAAKKVGALVVVDNTFA 189 (398)
T ss_pred CCCCccCCHHHHHHHHHHcCCEEEEECCcC
Confidence 557888889999999999999999998854
No 319
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=31.16 E-value=40 Score=31.88 Aligned_cols=28 Identities=29% Similarity=0.356 Sum_probs=25.7
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEe
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMV 38 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V 38 (350)
+.+|+..+++++++-||++|+.||+|-+
T Consensus 170 ~~~~~~~~~~~I~~l~~~~~~~li~D~a 197 (402)
T cd00378 170 SAYPRPIDFKRFREIADEVGAYLLVDMA 197 (402)
T ss_pred cccCCCcCHHHHHHHHHhcCCEEEEEcc
Confidence 6778888899999999999999999987
No 320
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=31.15 E-value=43 Score=35.72 Aligned_cols=37 Identities=14% Similarity=0.034 Sum_probs=29.5
Q ss_pred CCCCCCHHH-HHHHHHHHHHCCCEEEEEEec-c-CCCCCC
Q 018833 10 ASKYGSQAD-LKSLIQAFRQKGIKCLADMVI-N-HRTAER 46 (350)
Q Consensus 10 ~~~~Gt~~d-~~~lv~~aH~~Gi~VilD~V~-N-H~s~~~ 46 (350)
|..+|..++ ++++++.||++|..|++|.+- + |.....
T Consensus 637 pst~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~l~~ 676 (939)
T TIGR00461 637 PSTHGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVGLTS 676 (939)
T ss_pred CCcCceecccHHHHHHHHHHcCCEEEEEecChhhCCCCCC
Confidence 456889877 999999999999999999873 4 444443
No 321
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=31.09 E-value=34 Score=31.84 Aligned_cols=29 Identities=21% Similarity=0.316 Sum_probs=26.2
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEec
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
...|+..+++++++.||++|+.|++|-..
T Consensus 164 ~~tG~~~~~~~i~~l~~~~~~~livD~a~ 192 (373)
T TIGR03812 164 TELGQIDDIEELSKIALENGIYLHVDAAF 192 (373)
T ss_pred CCCCccCCHHHHHHHHHHcCCeEEEEcCc
Confidence 46788999999999999999999999964
No 322
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=31.05 E-value=59 Score=30.32 Aligned_cols=29 Identities=17% Similarity=0.352 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 018833 102 NPRVQKELSDWMNWLKTEIGFDGWRFDFV 130 (350)
Q Consensus 102 n~~v~~~l~~~~~~w~~~~gvDGfR~D~a 130 (350)
+++.|+.+++.+..+++++|+||+-+|-=
T Consensus 88 ~~~~R~~Fi~si~~~~~~~~fDGidiDwE 116 (345)
T cd02878 88 KPANRDTFANNVVNFVNKYNLDGVDFDWE 116 (345)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCceeeccc
Confidence 68889989888887777799999999964
No 323
>PLN02187 rooty/superroot1
Probab=31.05 E-value=58 Score=31.77 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
.++++++++.|+++|+-||.|=++.+..
T Consensus 223 ~e~l~~i~~~a~~~~i~iI~DE~Y~~l~ 250 (462)
T PLN02187 223 HDHLKKVAETARKLGIMVISDEVYDRTI 250 (462)
T ss_pred HHHHHHHHHHHHHCCCEEEEeccccccc
Confidence 7899999999999999999999998764
No 324
>PF09081 DUF1921: Domain of unknown function (DUF1921); InterPro: IPR015165 This domain, which is found in a set of prokaryotic amylases, has no known function []. ; PDB: 1QI5_A 1JDC_A 2AMG_A 1QPK_A 1JDD_A 1QI4_A 1JDA_A 1GCY_A 1QI3_A.
Probab=31.03 E-value=1.4e+02 Score=18.86 Aligned_cols=42 Identities=7% Similarity=0.343 Sum_probs=24.7
Q ss_pred CEEEEEE--CCEEEEEeCCCC-CCCCcCCCCcEEEEcC--CceEEEe
Q 018833 307 DVYIAAI--GDRVIMKIGPKM-DIGNLIPSDFKVAADG--TDYAVWE 348 (350)
Q Consensus 307 ~~~~~~r--~~~~lv~~n~~~-~~~~~~~~~~~~~~~~--~~~~~~~ 348 (350)
.+.+..+ ..+++++|+.+. .+++...+.|..+++. +...||-
T Consensus 5 GLv~t~~Gs~q~lv~AldSnlssP~qVasGsfs~a~N~dnG~vRiWr 51 (51)
T PF09081_consen 5 GLVATTSGSNQKLVFALDSNLSSPNQVASGSFSQAVNEDNGQVRIWR 51 (51)
T ss_dssp SEEEEEE-SS-EEEEEES-----GGGT-SS--EEEEEETTTTEEEEE
T ss_pred ceEEEEeccccEEEEEecCCCCCcccccccchHhhhhccCCcEEeeC
Confidence 3455555 678999998753 3466666799999886 7788883
No 325
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=31.01 E-value=48 Score=33.39 Aligned_cols=29 Identities=14% Similarity=0.296 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 12 KYGSQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 12 ~~Gt~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
.|.+.-||.+||++||+.|+.|+|=+=+=
T Consensus 83 ~FsG~~DlvkFikl~~~~GLyv~LRiGPy 111 (649)
T KOG0496|consen 83 DFSGRYDLVKFIKLIHKAGLYVILRIGPY 111 (649)
T ss_pred cccchhHHHHHHHHHHHCCeEEEecCCCe
Confidence 46678899999999999999999977543
No 326
>PRK05105 O-succinylbenzoate synthase; Provisional
Probab=30.96 E-value=54 Score=30.27 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=28.3
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Q 018833 4 RLYDLDASKYGSQADLKSLIQAFRQKGIKCLAD 36 (350)
Q Consensus 4 d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD 36 (350)
|...+++.+.|+..+.+++++.|+++||.+++-
T Consensus 232 d~i~ik~~k~GGi~~a~~i~~~A~~~gi~~~~~ 264 (322)
T PRK05105 232 RAIVIKPTLTGSLEKCQELIEQAHALGLRAVIS 264 (322)
T ss_pred CEEEECccccCCHHHHHHHHHHHHHcCCcEEEE
Confidence 444566778999999999999999999999874
No 327
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=30.95 E-value=45 Score=31.73 Aligned_cols=32 Identities=16% Similarity=0.083 Sum_probs=27.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 8 LDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 8 id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
+. ...|..-+++++++.||++|+.||+|-.+-
T Consensus 147 P~-NPtG~v~dl~~I~~la~~~gi~vIvDea~~ 178 (388)
T PRK08861 147 PS-NPLVRVVDIAELCQKAKAVGALVAVDNTFL 178 (388)
T ss_pred CC-CCCCcccCHHHHHHHHHHcCCEEEEECCcc
Confidence 44 567888889999999999999999998864
No 328
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=30.82 E-value=3.2e+02 Score=24.44 Aligned_cols=38 Identities=13% Similarity=-0.016 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhcCCCeEE-ecccCCCCHHHHHHHHHhc
Q 018833 107 KELSDWMNWLKTEIGFDGWR-FDFVKGYAPSITKVYMENT 145 (350)
Q Consensus 107 ~~l~~~~~~w~~~~gvDGfR-~D~a~~~~~~~~~~~~~~~ 145 (350)
+++.+.++...+ .|+|.++ .|++....++...++++.+
T Consensus 151 ~~~~~~~~~~~~-~g~~~i~l~DT~G~~~P~~v~~lv~~l 189 (273)
T cd07941 151 EYALATLKAAAE-AGADWLVLCDTNGGTLPHEIAEIVKEV 189 (273)
T ss_pred HHHHHHHHHHHh-CCCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 567777777776 8999988 4888888888777775544
No 329
>PF10922 DUF2745: Protein of unknown function (DUF2745); InterPro: IPR020147 The T7-like bacteriophage gene 1.2 protein is an inhibitor of the Escherichia coli dGTP triphosphohydrolase (dGTPase) and is implicated in DNA replication.
Probab=30.76 E-value=78 Score=22.74 Aligned_cols=24 Identities=8% Similarity=0.213 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEE
Q 018833 14 GSQADLKSLIQAFRQKGIKCLADM 37 (350)
Q Consensus 14 Gt~~d~~~lv~~aH~~Gi~VilD~ 37 (350)
|++.+||+.+++..++.+.||.|=
T Consensus 7 GNLnafKaA~~Rl~~lD~~V~~e~ 30 (85)
T PF10922_consen 7 GNLNAFKAATDRLYELDFAVISEE 30 (85)
T ss_pred CCHHHHHHHHHHHhhCcEEEEEEe
Confidence 789999999999999999888654
No 330
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=30.72 E-value=38 Score=31.54 Aligned_cols=28 Identities=11% Similarity=0.234 Sum_probs=25.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEe
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMV 38 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V 38 (350)
..-|...+++++++.||++|+-||+|-+
T Consensus 140 ~~tG~~~~i~~I~~l~~~~g~~livD~~ 167 (363)
T TIGR02326 140 TTTGILNPIEAVAKLAHRHGKVTIVDAM 167 (363)
T ss_pred CCccccCcHHHHHHHHHHcCCEEEEEcc
Confidence 5678888999999999999999999975
No 331
>PRK05942 aspartate aminotransferase; Provisional
Probab=30.66 E-value=54 Score=31.03 Aligned_cols=28 Identities=11% Similarity=0.147 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
.++++++++.|+++|+-||.|=++....
T Consensus 189 ~~~~~~i~~~a~~~~~~iI~De~y~~~~ 216 (394)
T PRK05942 189 REFFEEIVAFARKYEIMLVHDLCYAELA 216 (394)
T ss_pred HHHHHHHHHHHHHcCeEEEEeccchhhc
Confidence 7889999999999999999999876553
No 332
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=30.61 E-value=41 Score=31.84 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=26.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEEEEec
Q 018833 8 LDASKYGSQADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 8 id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
+. ..-|...+++++++.||++|+.||+|-+.
T Consensus 168 ~~-~~tG~~~~~~~i~~~~~~~~~~~ivD~a~ 198 (403)
T TIGR01979 168 VS-NVLGTVNPVEEIAKLAHQVGAKVLVDGAQ 198 (403)
T ss_pred cc-ccccccCCHHHHHHHHHHcCCEEEEEchh
Confidence 44 56788889999999999999999999864
No 333
>PLN02242 methionine gamma-lyase
Probab=30.50 E-value=51 Score=31.71 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=25.5
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEec
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
...|...+++++++.||++|+-||+|-++
T Consensus 174 NPtG~v~dl~~I~~la~~~gi~livDea~ 202 (418)
T PLN02242 174 NPTLTVADIPELARIAHEKGVTVVVDNTF 202 (418)
T ss_pred CCCCcccCHHHHHHHHHHhCCEEEEECCC
Confidence 45678889999999999999999999665
No 334
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=30.23 E-value=44 Score=31.28 Aligned_cols=32 Identities=22% Similarity=0.066 Sum_probs=27.8
Q ss_pred CcccCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Q 018833 3 GRLYDLDASKYGSQADLKSLIQAFRQKGIKCL 34 (350)
Q Consensus 3 ~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~Vi 34 (350)
.|..++|+.+.|+..+++++++.|+++||+++
T Consensus 261 ~d~i~~~~~~~GGit~~~~ia~~A~~~gi~~~ 292 (355)
T cd03321 261 CDLVMPDLMKIGGVTGWLRASALAEQAGIPMS 292 (355)
T ss_pred CCeEecCHhhhCCHHHHHHHHHHHHHcCCeec
Confidence 45667777788999999999999999999975
No 335
>PRK07683 aminotransferase A; Validated
Probab=30.07 E-value=56 Score=30.81 Aligned_cols=28 Identities=21% Similarity=0.413 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVINHR 42 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~NH~ 42 (350)
+.++++++++.||++|+-||.|-++...
T Consensus 179 s~~~~~~l~~~~~~~~~~ii~De~y~~~ 206 (387)
T PRK07683 179 SKEELQDIADVLKDKNIFVLSDEIYSEL 206 (387)
T ss_pred CHHHHHHHHHHHHHcCeEEEEecccccc
Confidence 3799999999999999999999998754
No 336
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=30.03 E-value=48 Score=31.79 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHCCCEEEEEEe
Q 018833 18 DLKSLIQAFRQKGIKCLADMV 38 (350)
Q Consensus 18 d~~~lv~~aH~~Gi~VilD~V 38 (350)
-+.+.|+.|.++||+|++|+.
T Consensus 117 ~ld~~I~~a~~~gi~V~iD~H 137 (407)
T COG2730 117 ILDEAINWAKKLGIYVLIDLH 137 (407)
T ss_pred HHHHHHHHHHhcCeeEEEEec
Confidence 567779999999999999973
No 337
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=29.95 E-value=55 Score=31.77 Aligned_cols=28 Identities=11% Similarity=0.181 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVINHR 42 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~NH~ 42 (350)
..++++++.+-|+++||.||.|-.....
T Consensus 220 ~~ddL~eIa~la~k~gI~lIvDaAyg~~ 247 (444)
T TIGR03531 220 SPDDIEEIAKICANYDIPHIVNNAYGLQ 247 (444)
T ss_pred chhCHHHHHHHHHHcCCEEEEECcCcCc
Confidence 7899999999999999999999887753
No 338
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=29.89 E-value=43 Score=31.84 Aligned_cols=32 Identities=25% Similarity=0.356 Sum_probs=27.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEec
Q 018833 7 DLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 7 ~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
.++ ..-|...+++++++.||++|+.|++|-+-
T Consensus 172 ~~~-n~tG~~~~~~~i~~~~~~~~~~vivD~a~ 203 (406)
T PRK09295 172 HVS-NVLGTENPLAEMIALAHQHGAKVLVDGAQ 203 (406)
T ss_pred cch-hcccccCCHHHHHHHHHHcCCEEEEEccc
Confidence 345 66788889999999999999999999873
No 339
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=29.80 E-value=44 Score=31.60 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=27.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEec
Q 018833 7 DLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 7 ~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
.++ ..-|...+++++++.||++|+-||+|-+-
T Consensus 168 ~~~-n~tG~~~~~~~i~~l~~~~g~~~ivD~a~ 199 (401)
T PRK10874 168 QMS-NVTGGCPDLARAITLAHQAGMVVMVDGAQ 199 (401)
T ss_pred CCc-ccccCcCCHHHHHHHHHHcCCEEEEECCc
Confidence 345 66788889999999999999999999985
No 340
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=29.71 E-value=57 Score=26.80 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEE
Q 018833 15 SQADLKSLIQAFRQKGIKCLADM 37 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~ 37 (350)
+..||..||.+++++|.+|+.=-
T Consensus 114 gD~DF~~Lv~~lre~G~~V~v~g 136 (160)
T TIGR00288 114 RDADFLPVINKAKENGKETIVIG 136 (160)
T ss_pred ccHhHHHHHHHHHHCCCEEEEEe
Confidence 45799999999999999999733
No 341
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=29.69 E-value=43 Score=32.08 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=27.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEec
Q 018833 7 DLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 7 ~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
.+. ..-|...+++++++.||++|+-||+|.+.
T Consensus 181 ~~~-n~tG~~~~~~~I~~l~~~~g~~vivD~a~ 212 (424)
T PLN02855 181 HVS-NVLGSILPVEDIVHWAHAVGAKVLVDACQ 212 (424)
T ss_pred Ccc-ccccccCCHHHHHHHHHHcCCEEEEEhhh
Confidence 345 66788889999999999999999999884
No 342
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=29.68 E-value=48 Score=30.58 Aligned_cols=39 Identities=15% Similarity=0.312 Sum_probs=31.1
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCC
Q 018833 4 RLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 44 (350)
Q Consensus 4 d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~ 44 (350)
|=+.|+|...|..+.|+.+|++|.++|+-|=+= .||-|-
T Consensus 97 ~k~RINPGNig~~~~v~~vVe~Ak~~g~piRIG--VN~GSL 135 (361)
T COG0821 97 DKVRINPGNIGFKDRVREVVEAAKDKGIPIRIG--VNAGSL 135 (361)
T ss_pred ceEEECCcccCcHHHHHHHHHHHHHcCCCEEEe--cccCch
Confidence 345677889999999999999999999987554 366553
No 343
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=29.58 E-value=48 Score=31.47 Aligned_cols=29 Identities=14% Similarity=0.122 Sum_probs=24.8
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEec
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
...|..-+++++++.||++|+.||+|-..
T Consensus 148 NPtG~v~dl~~I~~la~~~gi~livD~t~ 176 (385)
T PRK08574 148 NPTLKVIDVPEVAKAAKELGAILVVDNTF 176 (385)
T ss_pred CCCCEecCHHHHHHHHHHcCCEEEEECCC
Confidence 34566778999999999999999999874
No 344
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=29.53 E-value=62 Score=24.74 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=18.6
Q ss_pred CCCHHHHHHHHHHHHHCCCEE
Q 018833 13 YGSQADLKSLIQAFRQKGIKC 33 (350)
Q Consensus 13 ~Gt~~d~~~lv~~aH~~Gi~V 33 (350)
=|...++.+.++.|+++|.+|
T Consensus 63 sg~~~~~~~~~~~ak~~g~~v 83 (131)
T PF01380_consen 63 SGETRELIELLRFAKERGAPV 83 (131)
T ss_dssp SSTTHHHHHHHHHHHHTTSEE
T ss_pred cccchhhhhhhHHHHhcCCeE
Confidence 356788999999999999999
No 345
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=29.51 E-value=47 Score=32.05 Aligned_cols=30 Identities=20% Similarity=0.398 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
...|..-+++++++.||++|+.||+|-+.-
T Consensus 154 NPtG~v~dl~~I~~la~~~~i~vVvD~a~a 183 (425)
T PRK06084 154 NPAGNIIDIQALADAAHRHGVPLIVDNTVA 183 (425)
T ss_pred CCCCeecCHHHHHHHHHHcCCEEEEECCCc
Confidence 567888889999999999999999998764
No 346
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=29.49 E-value=42 Score=30.87 Aligned_cols=30 Identities=20% Similarity=0.496 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
..+|...+++++++.|+++|+.||+|-+-.
T Consensus 114 ~~~G~~~~~~~i~~l~~~~~i~li~D~a~~ 143 (352)
T cd00616 114 HLYGNPADMDAIMAIAKRHGLPVIEDAAQA 143 (352)
T ss_pred CCCCCcCCHHHHHHHHHHcCCeEEEECCCC
Confidence 347888899999999999999999998743
No 347
>PRK04311 selenocysteine synthase; Provisional
Probab=29.43 E-value=39 Score=33.02 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEE
Q 018833 14 GSQADLKSLIQAFRQKGIKCLADM 37 (350)
Q Consensus 14 Gt~~d~~~lv~~aH~~Gi~VilD~ 37 (350)
+..-+++++++.||++|+.||+|.
T Consensus 234 ~~~~dl~eI~~lak~~gi~vivD~ 257 (464)
T PRK04311 234 TKEVSLAELAALGKEHGLPVVYDL 257 (464)
T ss_pred CCcCCHHHHHHHHHHcCCeEEEEC
Confidence 445689999999999999999998
No 348
>PRK00468 hypothetical protein; Provisional
Probab=29.43 E-value=85 Score=22.16 Aligned_cols=23 Identities=4% Similarity=0.351 Sum_probs=19.4
Q ss_pred HHHHHHHHHHH-HHCCCEEEEEEe
Q 018833 16 QADLKSLIQAF-RQKGIKCLADMV 38 (350)
Q Consensus 16 ~~d~~~lv~~a-H~~Gi~VilD~V 38 (350)
...++.++.+| .+.|.+|.||++
T Consensus 52 i~AIRtvv~aaa~k~~~rv~leI~ 75 (75)
T PRK00468 52 AKAIRTVVKAAAIKENKRVVVEII 75 (75)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEC
Confidence 56799999987 678899999974
No 349
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=29.40 E-value=50 Score=31.86 Aligned_cols=30 Identities=13% Similarity=0.336 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
...|..-+++++++.||++|+-||+|-+.-
T Consensus 159 NptG~v~dl~~I~~la~~~gi~livD~a~a 188 (427)
T PRK05994 159 NPGGTVTDIAAIAEVAHRAGLPLIVDNTLA 188 (427)
T ss_pred CCCCeecCHHHHHHHHHHcCCEEEEECCcc
Confidence 567888899999999999999999998853
No 350
>PRK07337 aminotransferase; Validated
Probab=29.39 E-value=77 Score=29.84 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
.++++++++.|+++|+-||+|=++....
T Consensus 182 ~~~~~~i~~~a~~~~~~ii~De~y~~~~ 209 (388)
T PRK07337 182 PDELRRIVEAVRARGGFTIVDEIYQGLS 209 (388)
T ss_pred HHHHHHHHHHHHHCCCEEEEeccccccc
Confidence 7899999999999999999998876554
No 351
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=29.39 E-value=48 Score=31.17 Aligned_cols=32 Identities=6% Similarity=0.185 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 12 KYGSQADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 12 ~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
..|+..+++++++-||++|+.||.|-+-.+.+
T Consensus 128 ~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~ 159 (375)
T PRK11706 128 YAGVACEMDTIMALAKKHNLFVVEDAAQGVMS 159 (375)
T ss_pred CCCCccCHHHHHHHHHHcCCEEEEECcccccc
Confidence 37888899999999999999999999866554
No 352
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=29.29 E-value=69 Score=30.56 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
.+++++|++.|+++|+-||.|-++.+..
T Consensus 189 ~~~~~~l~~~a~~~~~~ii~De~Y~~l~ 216 (409)
T PLN00143 189 YEHLNKIAETARKLGILVIADEVYGHIV 216 (409)
T ss_pred HHHHHHHHHHHHHcCCeEEEEccccccc
Confidence 7899999999999999999999998764
No 353
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=29.29 E-value=66 Score=29.56 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=25.5
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEe
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMV 38 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V 38 (350)
+..|+..+++++++.||++|+-+|+|-+
T Consensus 136 ~~~G~~~~~~~i~~l~~~~~~~livD~~ 163 (355)
T TIGR03301 136 TTTGILNPLEAIAKVARSHGAVLIVDAM 163 (355)
T ss_pred CcccchhHHHHHHHHHHHcCCEEEEEec
Confidence 5678999999999999999999999965
No 354
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=29.16 E-value=72 Score=30.17 Aligned_cols=30 Identities=10% Similarity=0.238 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccCCCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVINHRTA 44 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~NH~s~ 44 (350)
+.++++++++.|+++|+-||.|-++.+.+.
T Consensus 190 s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~ 219 (396)
T PRK09257 190 TPEQWDELAELLKERGLIPFLDIAYQGFGD 219 (396)
T ss_pred CHHHHHHHHHHHHhCCcEEEEecccccccc
Confidence 479999999999999999999999987753
No 355
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=29.11 E-value=42 Score=29.35 Aligned_cols=22 Identities=23% Similarity=0.526 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHHHCCCEEEEE
Q 018833 15 SQADLKSLIQAFRQKGIKCLAD 36 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD 36 (350)
+.++|.+||+.||++|+.+-|=
T Consensus 165 ~~~~L~~Fv~~ar~~gL~~aLA 186 (235)
T PF04476_consen 165 SEEELAEFVAQARAHGLMCALA 186 (235)
T ss_pred CHHHHHHHHHHHHHccchhhcc
Confidence 4789999999999999987653
No 356
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=29.07 E-value=41 Score=31.61 Aligned_cols=30 Identities=17% Similarity=0.308 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEeccC
Q 018833 12 KYGSQADLKSLIQAFRQKGIKCLADMVINH 41 (350)
Q Consensus 12 ~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH 41 (350)
.+|...+++++++.|+++|+.||.|-+--.
T Consensus 130 ~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~ 159 (380)
T TIGR03588 130 FAGKSVDMQAIAALAKKHGLKIIEDASHAL 159 (380)
T ss_pred CCCccCCHHHHHHHHHHcCCEEEEECCCcc
Confidence 478888999999999999999999987543
No 357
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=29.07 E-value=65 Score=31.38 Aligned_cols=22 Identities=9% Similarity=0.228 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHCCCEEEEEE
Q 018833 16 QADLKSLIQAFRQKGIKCLADM 37 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~ 37 (350)
.++|++|++.||+.||.+++++
T Consensus 145 ~~~l~~l~~~a~~lGl~~lvEv 166 (454)
T PRK09427 145 DEQYRQLAAVAHSLNMGVLTEV 166 (454)
T ss_pred HHHHHHHHHHHHHcCCcEEEEE
Confidence 4689999999999999999997
No 358
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=28.81 E-value=45 Score=31.81 Aligned_cols=30 Identities=20% Similarity=0.203 Sum_probs=26.2
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
...|..-+++++++.||++|+.||+|-+.-
T Consensus 161 NptG~v~dl~~I~~la~~~gi~lvvD~a~a 190 (398)
T PRK07504 161 NPTLEVIDIAAVAKIANQAGAKLVVDNVFA 190 (398)
T ss_pred CCCcEecCHHHHHHHHHHcCCEEEEECCcc
Confidence 556888889999999999999999998754
No 359
>PRK00077 eno enolase; Provisional
Probab=28.77 E-value=64 Score=31.15 Aligned_cols=40 Identities=15% Similarity=0.328 Sum_probs=33.2
Q ss_pred CcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCC
Q 018833 3 GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 46 (350)
Q Consensus 3 ~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~ 46 (350)
.|...+++.+.||..+.++.++.|+++|+.++ +.|.+.+.
T Consensus 329 ~d~v~ik~~~~GGitea~~ia~lA~~~gi~~~----vsh~sgEt 368 (425)
T PRK00077 329 ANSILIKVNQIGTLTETLDAIELAKRAGYTAV----VSHRSGET 368 (425)
T ss_pred CCEEEeCccccCCHHHHHHHHHHHHHcCCeEE----EeCCCCcc
Confidence 45666777789999999999999999999987 35777665
No 360
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=28.67 E-value=51 Score=30.89 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEeccC
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVINH 41 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH 41 (350)
..-|...+++++++.||++|+.||+|-+..+
T Consensus 174 ~~tG~~~~~~~i~~l~~~~~~~li~De~~~~ 204 (385)
T TIGR01825 174 SMDGDVAPLPEIVELAERYGAVTYVDDAHGS 204 (385)
T ss_pred cCCCCccCHHHHHHHHHHhCCEEEEECcccc
Confidence 3456677899999999999999999999743
No 361
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=28.65 E-value=82 Score=26.49 Aligned_cols=28 Identities=14% Similarity=0.237 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVINHR 42 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~NH~ 42 (350)
+.+...++++.|+++|+++++++.-=++
T Consensus 88 ~~~~~~~~i~~~~~~g~~~~v~~~~~~t 115 (202)
T cd04726 88 PLSTIKKAVKAAKKYGKEVQVDLIGVED 115 (202)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEEeCCCC
Confidence 3467899999999999999999654333
No 362
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=28.60 E-value=48 Score=31.34 Aligned_cols=33 Identities=9% Similarity=0.170 Sum_probs=28.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
...|...+++++++-|+++|+.||.|-+-.+.+
T Consensus 127 ~~~G~~~d~~~I~~la~~~~i~vIeDaa~~~g~ 159 (376)
T TIGR02379 127 HYAGVACDMDTIMALANKHQLFVIEDAAQGVMS 159 (376)
T ss_pred CCCCCccCHHHHHHHHHHCCCEEEEECccccCC
Confidence 346888899999999999999999998865543
No 363
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=28.58 E-value=64 Score=31.35 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEe
Q 018833 16 QADLKSLIQAFRQKGIKCLADMV 38 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V 38 (350)
++.+++..+-||++||.|+||-.
T Consensus 203 lenlr~V~~la~~~GIplhLDgA 225 (467)
T TIGR02617 203 LANLKAVYEIAKKYDIPVVMDSA 225 (467)
T ss_pred HHHHHHHHHHHHHcCCcEEEEhH
Confidence 79999999999999999999974
No 364
>PLN02397 aspartate transaminase
Probab=28.45 E-value=79 Score=30.36 Aligned_cols=30 Identities=7% Similarity=0.046 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccCCCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVINHRTA 44 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~NH~s~ 44 (350)
+.++++++++.|+++|+-||.|-++.+...
T Consensus 212 s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~ 241 (423)
T PLN02397 212 TPEQWEQISDLIKSKNHLPFFDSAYQGFAS 241 (423)
T ss_pred CHHHHHHHHHHHHhCCcEEEEecccCCccC
Confidence 379999999999999999999999988863
No 365
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=28.45 E-value=62 Score=30.12 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=29.0
Q ss_pred CcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 018833 3 GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 35 (350)
Q Consensus 3 ~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~Vil 35 (350)
.|..++|+.+.|+..+.+++++.|+++|++|+.
T Consensus 246 ~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~ 278 (341)
T cd03327 246 VDILQPDVNWVGGITELKKIAALAEAYGVPVVP 278 (341)
T ss_pred CCEEecCccccCCHHHHHHHHHHHHHcCCeecc
Confidence 467778877889999999999999999999774
No 366
>PRK02227 hypothetical protein; Provisional
Probab=28.45 E-value=49 Score=29.06 Aligned_cols=21 Identities=14% Similarity=0.358 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHHCCCEEEE
Q 018833 15 SQADLKSLIQAFRQKGIKCLA 35 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~Vil 35 (350)
+.++|++||+.||++||..-|
T Consensus 165 ~~~~L~~Fv~~ar~~Gl~~gL 185 (238)
T PRK02227 165 DEEELAEFVAEARSHGLMSAL 185 (238)
T ss_pred CHHHHHHHHHHHHHcccHhHh
Confidence 478999999999999998654
No 367
>PRK06767 methionine gamma-lyase; Provisional
Probab=28.43 E-value=53 Score=31.12 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
...|+..+++++++.||++|+.||+|-.+.
T Consensus 157 NptG~v~dl~~I~~la~~~g~~vivD~a~a 186 (386)
T PRK06767 157 NPTMKLIDLKQVIRVAKRNGLLVIVDNTFC 186 (386)
T ss_pred CCCceecCHHHHHHHHHHcCCEEEEECCCc
Confidence 456888889999999999999999999864
No 368
>PRK10534 L-threonine aldolase; Provisional
Probab=28.40 E-value=65 Score=29.49 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEe
Q 018833 16 QADLKSLIQAFRQKGIKCLADMV 38 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V 38 (350)
.++++++++.|+++|+.||+|=.
T Consensus 146 ~~~l~~i~~~~~~~~~~lvvDEA 168 (333)
T PRK10534 146 REYLKQAWEFTRERNLALHVDGA 168 (333)
T ss_pred HHHHHHHHHHHHHcCCeEEeeHH
Confidence 68999999999999999999953
No 369
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=28.12 E-value=53 Score=30.95 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=22.4
Q ss_pred CCCHHHH-HHHHHHHHHCCCEEEEEEe
Q 018833 13 YGSQADL-KSLIQAFRQKGIKCLADMV 38 (350)
Q Consensus 13 ~Gt~~d~-~~lv~~aH~~Gi~VilD~V 38 (350)
-|...++ +++.+.||++|+-||+|-+
T Consensus 171 ~G~~~~~l~~i~~la~~~g~~livD~~ 197 (398)
T cd00613 171 LGVFEDLIKEIADIAHSAGALVYVDGD 197 (398)
T ss_pred CceecchHHHHHHHHHhcCCEEEEEec
Confidence 4766664 9999999999999999974
No 370
>PRK12414 putative aminotransferase; Provisional
Probab=28.07 E-value=60 Score=30.60 Aligned_cols=28 Identities=39% Similarity=0.418 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
.++++++++.|+++|+.||.|-++....
T Consensus 181 ~~~~~~i~~~a~~~~~~ii~De~Y~~~~ 208 (384)
T PRK12414 181 AADLARLAQLTRNTDIVILSDEVYEHVV 208 (384)
T ss_pred HHHHHHHHHHHHHCCeEEEEhhhhhhcc
Confidence 6899999999999999999999987654
No 371
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=28.05 E-value=75 Score=30.29 Aligned_cols=33 Identities=12% Similarity=0.256 Sum_probs=27.8
Q ss_pred CCCC---CHHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 11 SKYG---SQADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 11 ~~~G---t~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
...| +.+++++|++.|+++|+-||.|-++....
T Consensus 188 NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~ 223 (412)
T PTZ00433 188 NPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMV 223 (412)
T ss_pred CCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccc
Confidence 3456 48999999999999999999999987553
No 372
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=28.05 E-value=75 Score=30.50 Aligned_cols=40 Identities=15% Similarity=0.333 Sum_probs=33.2
Q ss_pred CcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCC
Q 018833 3 GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 46 (350)
Q Consensus 3 ~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~ 46 (350)
.|...+++.+.||..+..+.++.|+++|+.++ +-|.+.+.
T Consensus 329 ~d~v~ik~~~iGGite~~~ia~lA~~~G~~~~----~sh~sget 368 (408)
T cd03313 329 ANALLIKVNQIGTLTETIEAIKLAKKNGYGVV----VSHRSGET 368 (408)
T ss_pred CCEEEEcccccCCHHHHHHHHHHHHHcCCeEE----ccCCCchh
Confidence 45666777789999999999999999999887 46877664
No 373
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=28.03 E-value=55 Score=31.43 Aligned_cols=29 Identities=10% Similarity=0.227 Sum_probs=25.3
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEec
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
...|...+++++++.||++|+.||+|-+.
T Consensus 153 NPtg~v~dl~~I~~la~~~~i~livD~t~ 181 (418)
T TIGR01326 153 NPAINVPDIEAIAEVAHAHGVPLIVDNTF 181 (418)
T ss_pred CCCCeecCHHHHHHHHHHcCCEEEEECCC
Confidence 44577788999999999999999999875
No 374
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=27.99 E-value=62 Score=30.38 Aligned_cols=28 Identities=18% Similarity=0.106 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
.++++++++.|+++|+.||.|-++.+..
T Consensus 183 ~~~~~~i~~~a~~~~~~ii~De~y~~l~ 210 (383)
T TIGR03540 183 LKFFKELVEFAKEYNIIVCHDNAYSEIT 210 (383)
T ss_pred HHHHHHHHHHHHHcCEEEEEecchhhhc
Confidence 7899999999999999999999987654
No 375
>PRK12566 glycine dehydrogenase; Provisional
Probab=27.97 E-value=58 Score=34.76 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=23.3
Q ss_pred CCCCCH-HHHHHHHHHHHHCCCEEEEEEe
Q 018833 11 SKYGSQ-ADLKSLIQAFRQKGIKCLADMV 38 (350)
Q Consensus 11 ~~~Gt~-~d~~~lv~~aH~~Gi~VilD~V 38 (350)
..+|.. ++++++++.||++|..|++|.+
T Consensus 651 nt~Gv~e~~V~eI~~iah~~Galv~vDgA 679 (954)
T PRK12566 651 STHGVYEEGIREICEVVHQHGGQVYMDGA 679 (954)
T ss_pred CcCceecchHHHHHHHHHHcCCEEEEEee
Confidence 445554 5599999999999999999987
No 376
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=27.87 E-value=52 Score=23.04 Aligned_cols=32 Identities=19% Similarity=0.176 Sum_probs=17.4
Q ss_pred CcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEec
Q 018833 3 GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 3 ~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
.|.+.|| +..-+.++ |+++|++|.+||-=|-+
T Consensus 27 ~~v~~iD-~~~~~~~~----I~~L~~~G~~vicY~s~ 58 (74)
T PF03537_consen 27 VDVVVID-LFDFSKEE----IARLKAQGKKVICYFSI 58 (74)
T ss_dssp -SEEEE--SBS--HHH----HHHHHHTT-EEEEEEES
T ss_pred CCEEEEC-CccCCHHH----HHHHHHCCCEEEEEEeC
Confidence 3556677 55545444 55569999888754444
No 377
>PRK06207 aspartate aminotransferase; Provisional
Probab=27.86 E-value=79 Score=30.10 Aligned_cols=28 Identities=11% Similarity=0.229 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
.++++++++.|+++|+-||.|=++....
T Consensus 197 ~e~l~~l~~~a~~~~~~iI~De~Y~~~~ 224 (405)
T PRK06207 197 AEEIAQIAALARRYGATVIVDQLYSRLL 224 (405)
T ss_pred HHHHHHHHHHHHHcCCEEEEeccccccc
Confidence 7899999999999999999999988764
No 378
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=27.82 E-value=83 Score=29.13 Aligned_cols=32 Identities=25% Similarity=0.290 Sum_probs=27.0
Q ss_pred CCCC---CHHHHHHHHHHHHHCCCEEEEEEeccCC
Q 018833 11 SKYG---SQADLKSLIQAFRQKGIKCLADMVINHR 42 (350)
Q Consensus 11 ~~~G---t~~d~~~lv~~aH~~Gi~VilD~V~NH~ 42 (350)
...| +.++++++++.|+++|+-||.|-++...
T Consensus 147 NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~ 181 (350)
T TIGR03537 147 NPTGATAPRSYLKETIAMCREHGIILCSDECYTEI 181 (350)
T ss_pred CCcCcccCHHHHHHHHHHHHHcCcEEEEecccccc
Confidence 4556 4788999999999999999999987654
No 379
>PRK08912 hypothetical protein; Provisional
Probab=27.76 E-value=60 Score=30.56 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHR 42 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~ 42 (350)
.++++++++.|+++|+-||+|-++...
T Consensus 178 ~~~~~~i~~~~~~~~~~ii~De~y~~~ 204 (387)
T PRK08912 178 REELALLAEFCQRHDAVAICDEVWEHV 204 (387)
T ss_pred HHHHHHHHHHHHHCCeEEEEhhhhhhc
Confidence 789999999999999999999887644
No 380
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=27.65 E-value=49 Score=30.99 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=23.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
.-+|...++.++.+-|+++||.||-|-.=.|-+
T Consensus 121 h~~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~ 153 (363)
T PF01041_consen 121 HLFGNPADMDAIRAIARKHGIPLIEDAAQAFGA 153 (363)
T ss_dssp -GGGB---HHHHHHHHHHTT-EEEEE-TTTTT-
T ss_pred cCCCCcccHHHHHHHHHHcCCcEEEccccccCc
Confidence 357888899999999999999999999776644
No 381
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=27.52 E-value=54 Score=31.77 Aligned_cols=29 Identities=10% Similarity=0.192 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 12 KYGSQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 12 ~~Gt~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
..|...+++++.+.||++|+.||+|-+.-
T Consensus 167 p~~~v~di~~I~~la~~~gi~livD~t~a 195 (437)
T PRK05613 167 PQADVLDIPAVAEVAHRNQVPLIVDNTIA 195 (437)
T ss_pred CCCcccCHHHHHHHHHHcCCeEEEECCCc
Confidence 34567899999999999999999999853
No 382
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=27.51 E-value=66 Score=30.20 Aligned_cols=28 Identities=7% Similarity=0.040 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
.++++++++.|+++|+-||+|-++.+..
T Consensus 185 ~~~~~~l~~~~~~~~~~ii~De~y~~~~ 212 (385)
T PRK09276 185 LEFFEEVVDFAKKYDIIVCHDAAYSEIA 212 (385)
T ss_pred HHHHHHHHHHHHHCCcEEEEecchhhee
Confidence 7899999999999999999999987654
No 383
>PRK09148 aminotransferase; Validated
Probab=27.31 E-value=67 Score=30.54 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
+.++++++++.||++|+-||.|=++.+..
T Consensus 183 s~~~l~~l~~~a~~~~~~ii~De~Y~~~~ 211 (405)
T PRK09148 183 DLDFYKDVVAFAKKHDIIILSDLAYSEIY 211 (405)
T ss_pred CHHHHHHHHHHHHHcCeEEEEeccchhhh
Confidence 37899999999999999999999988764
No 384
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=27.13 E-value=54 Score=30.54 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEec
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
..-|...+++++++.||++|+.||+|-+-
T Consensus 148 n~tG~~~~~~~i~~l~~~~~~~livD~a~ 176 (376)
T TIGR01977 148 NVTGTILPIEEIGELAQENGIFFILDAAQ 176 (376)
T ss_pred CCccccCCHHHHHHHHHHcCCEEEEEhhh
Confidence 56788888999999999999999999985
No 385
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=27.12 E-value=90 Score=31.03 Aligned_cols=42 Identities=12% Similarity=0.121 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHCCCEEEEEEeccCCCCCCCC--CcccceeecCC
Q 018833 18 DLKSLIQAFRQKGIKCLADMVINHRTAERKD--GRGIYCIFEGG 59 (350)
Q Consensus 18 d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~--~~~~~~~~~~~ 59 (350)
.+..||++.|++|++-=+=+-|--.+.++.- .+++|..-.+|
T Consensus 356 giE~li~~I~e~Gl~fGIWlePemvs~dSdlfrqHPDWvvk~~G 399 (687)
T COG3345 356 GIEELIEAIAENGLIFGIWLEPEMVSEDSDLFRQHPDWVVKVNG 399 (687)
T ss_pred cHHHHHHHHHHcCCccceeecchhcccchHHHhhCCCeEEecCC
Confidence 4667899999999998887777766666642 45566655443
No 386
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=27.10 E-value=77 Score=30.43 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEec
Q 018833 101 LNPRVQKELSDWMNWLKTEIGFDGWRFD 128 (350)
Q Consensus 101 ~n~~v~~~l~~~~~~w~~~~gvDGfR~D 128 (350)
.+++.|+.+++.+.-+++++|+||+-+|
T Consensus 101 ~~~~~R~~Fi~siv~~l~~~~fDGidiD 128 (413)
T cd02873 101 ESSESRNAFINSAHSLLKTYGFDGLDLA 128 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeEee
Confidence 4788899888888766767999999998
No 387
>PRK05839 hypothetical protein; Provisional
Probab=27.08 E-value=75 Score=29.80 Aligned_cols=28 Identities=7% Similarity=0.032 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
.++++++++.|+++|+-||.|=++.+..
T Consensus 174 ~~~l~~i~~~~~~~~~~ii~DE~Y~~~~ 201 (374)
T PRK05839 174 LEELIEWVKLALKHDFILINDECYSEIY 201 (374)
T ss_pred HHHHHHHHHHHHHcCCEEEeccchhhcc
Confidence 7899999999999999999999998764
No 388
>PRK11113 D-alanyl-D-alanine carboxypeptidase/endopeptidase; Provisional
Probab=27.02 E-value=1.2e+02 Score=29.67 Aligned_cols=36 Identities=17% Similarity=0.494 Sum_probs=27.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEE-EEeccCCCCCC
Q 018833 9 DASKYGSQADLKSLIQAFRQKGIKCLA-DMVINHRTAER 46 (350)
Q Consensus 9 d~~~~Gt~~d~~~lv~~aH~~Gi~Vil-D~V~NH~s~~~ 46 (350)
| |.|+ .++|.+|+++++++||+-|- |+++.-...+.
T Consensus 108 D-PtL~-~~~L~~la~~l~~~GI~~I~G~lv~D~s~f~~ 144 (477)
T PRK11113 108 D-PTLT-RQDLRNMVATLKKSGVKQIDGNLLIDTSVFAS 144 (477)
T ss_pred C-CCCC-HHHHHHHHHHHHHcCCcEEeeeEEEECccccC
Confidence 6 7776 46699999999999999885 78876554443
No 389
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=27.01 E-value=80 Score=17.92 Aligned_cols=18 Identities=28% Similarity=0.339 Sum_probs=12.2
Q ss_pred HHHHHHHHhcCCCeEEecc
Q 018833 111 DWMNWLKTEIGFDGWRFDF 129 (350)
Q Consensus 111 ~~~~~w~~~~gvDGfR~D~ 129 (350)
+.++..++ .||||+--|-
T Consensus 11 ~~~~~~l~-~GVDgI~Td~ 28 (30)
T PF13653_consen 11 ASWRELLD-LGVDGIMTDY 28 (30)
T ss_dssp HHHHHHHH-HT-SEEEES-
T ss_pred HHHHHHHH-cCCCEeeCCC
Confidence 45577787 9999987663
No 390
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=26.99 E-value=3.2e+02 Score=25.43 Aligned_cols=38 Identities=21% Similarity=0.296 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHH
Q 018833 99 DHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKV 140 (350)
Q Consensus 99 n~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~ 140 (350)
|..+|+|++..++. .+++|||||=++.--.-+..++++
T Consensus 53 dl~~p~v~~~Q~~l----A~~~GI~gF~~~~Ywf~gk~lLe~ 90 (345)
T PF14307_consen 53 DLRDPEVMEKQAEL----AKEYGIDGFCFYHYWFNGKRLLEK 90 (345)
T ss_pred cCCCHHHHHHHHHH----HHHhCCCEEEEEeeecCCchHHHH
Confidence 55678888777664 456899999998644434444433
No 391
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=26.97 E-value=62 Score=29.90 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=25.5
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEe
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMV 38 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V 38 (350)
...|+..+++++.+.||++|+.|++|-+
T Consensus 135 ~~~G~~~~~~~i~~~a~~~~~~li~D~~ 162 (356)
T cd06451 135 TSTGVLNPLEGIGALAKKHDALLIVDAV 162 (356)
T ss_pred CCcccccCHHHHHHHHHhcCCEEEEeee
Confidence 4588888999999999999999999986
No 392
>PLN02822 serine palmitoyltransferase
Probab=26.92 E-value=59 Score=31.92 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=27.6
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEeccC
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVINH 41 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH 41 (350)
+..|...+++++++-|+++|+.+|+|=+.-+
T Consensus 256 ~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~ 286 (481)
T PLN02822 256 QNSGQIAPLDEIVRLKEKYRFRVLLDESNSF 286 (481)
T ss_pred CCCCCccCHHHHHHHHHHcCCEEEEECCccc
Confidence 5568888899999999999999999998863
No 393
>PLN02483 serine palmitoyltransferase
Probab=26.86 E-value=52 Score=32.37 Aligned_cols=29 Identities=14% Similarity=0.122 Sum_probs=25.9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEec
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
+.-|+..+++++++-||++|+.||+|=+.
T Consensus 251 s~~G~~~~l~~I~~la~~~~~~livDEa~ 279 (489)
T PLN02483 251 SMEGELCKLPEIVAVCKKYKAYVYLDEAH 279 (489)
T ss_pred CCCCcccCHHHHHHHHHHcCCEEEEECcC
Confidence 44588889999999999999999999994
No 394
>PTZ00445 p36-lilke protein; Provisional
Probab=26.70 E-value=72 Score=27.60 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHCCCEEEE
Q 018833 17 ADLKSLIQAFRQKGIKCLA 35 (350)
Q Consensus 17 ~d~~~lv~~aH~~Gi~Vil 35 (350)
.+|+.|++++.+.||+|++
T Consensus 78 pefk~~~~~l~~~~I~v~V 96 (219)
T PTZ00445 78 PDFKILGKRLKNSNIKISV 96 (219)
T ss_pred HHHHHHHHHHHHCCCeEEE
Confidence 5699999999999999974
No 395
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=26.69 E-value=72 Score=26.40 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEE
Q 018833 12 KYGSQADLKSLIQAFRQKGIKCLA 35 (350)
Q Consensus 12 ~~Gt~~d~~~lv~~aH~~Gi~Vil 35 (350)
.-|...+..++++.|+++|++||.
T Consensus 84 ~sG~t~~~i~~~~~ak~~g~~iI~ 107 (179)
T cd05005 84 GSGETSSVVNAAEKAKKAGAKVVL 107 (179)
T ss_pred CCCCcHHHHHHHHHHHHCCCeEEE
Confidence 446678899999999999999874
No 396
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=26.68 E-value=51 Score=30.88 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=25.8
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEec
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
..-|...+++++.+.||++|+.|++|-+-
T Consensus 147 n~tG~~~~~~~I~~l~~~~g~~vivD~~~ 175 (379)
T TIGR03402 147 NETGTIFPIEEIGEIAKERGALFHTDAVQ 175 (379)
T ss_pred CCeeecccHHHHHHHHHHcCCEEEEECcc
Confidence 56788888999999999999999999864
No 397
>PTZ00081 enolase; Provisional
Probab=26.68 E-value=74 Score=30.86 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=32.9
Q ss_pred CcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCC
Q 018833 3 GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 46 (350)
Q Consensus 3 ~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~ 46 (350)
.|...+++.+.||..+.++.++-|+++|+.+++ -|.|.+.
T Consensus 349 ad~i~iKvnqiGGITe~l~~a~lA~~~Gi~~ii----shrsgET 388 (439)
T PTZ00081 349 CNALLLKVNQIGTVTEAIEAAKLAQKNGWGVMV----SHRSGET 388 (439)
T ss_pred CCEEEeccccccCHHHHHHHHHHHHHcCCcEEE----eCCCchh
Confidence 355566777899999999999999999999876 5777654
No 398
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=26.61 E-value=47 Score=28.54 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=28.3
Q ss_pred CCcccCCCCCCCC--------CHHHHHHHHHHHHHCCCEEEEEEeccC
Q 018833 2 PGRLYDLDASKYG--------SQADLKSLIQAFRQKGIKCLADMVINH 41 (350)
Q Consensus 2 p~d~~~id~~~~G--------t~~d~~~lv~~aH~~Gi~VilD~V~NH 41 (350)
|-|+-++| ..+- ...-++.+++.||..|++||.+-|=+.
T Consensus 168 ~~d~iKld-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gVe~~ 214 (241)
T smart00052 168 PVDLLKID-KSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEGVETP 214 (241)
T ss_pred CCCeEEEC-HHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEecCCCH
Confidence 44555666 4432 235689999999999999999977553
No 399
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=26.60 E-value=61 Score=28.52 Aligned_cols=32 Identities=9% Similarity=0.104 Sum_probs=26.4
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEe
Q 018833 6 YDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 38 (350)
Q Consensus 6 ~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V 38 (350)
..|. +-+|+.+..+.+++.++++++.||+|-.
T Consensus 81 v~ig-~gl~~~~~~~~i~~~~~~~~~pvVlDa~ 112 (254)
T cd01171 81 VVIG-PGLGRDEEAAEILEKALAKDKPLVLDAD 112 (254)
T ss_pred EEEe-cCCCCCHHHHHHHHHHHhcCCCEEEEcH
Confidence 3455 6688878899999999999999999954
No 400
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=26.58 E-value=72 Score=30.89 Aligned_cols=33 Identities=12% Similarity=0.108 Sum_probs=28.6
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
+.+|...+++++++-|+++|+.||.|-+-.+-+
T Consensus 167 ~~~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~ 199 (438)
T PRK15407 167 HTLGNPFDLAAVKAFCDKHNLWLIEDNCDALGS 199 (438)
T ss_pred CCCCChhhHHHHHHHHHHCCCEEEEECccchhh
Confidence 458899999999999999999999999776543
No 401
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=26.57 E-value=1.1e+02 Score=26.91 Aligned_cols=37 Identities=14% Similarity=0.216 Sum_probs=31.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCC
Q 018833 7 DLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 45 (350)
Q Consensus 7 ~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~ 45 (350)
+|. | +-..+.|+++.+.++++||..++=++|++....
T Consensus 8 DVs-P-~~~~~~l~~i~d~l~~~~ipf~v~vIP~~~d~~ 44 (243)
T PF10096_consen 8 DVS-P-FSDLEKLKEIADYLYKYGIPFSVAVIPVYVDPN 44 (243)
T ss_pred CCC-C-CCCHHHHHHHHHHHHHCCCCEEEEEEecccCCC
Confidence 455 4 568999999999999999999999999988544
No 402
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=26.51 E-value=1.2e+02 Score=26.21 Aligned_cols=107 Identities=14% Similarity=0.155 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCCCCcccceeecCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQP 94 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (350)
..+-.+..+++||+.|+.|++|+.=|..-.+- ..|.. .-......+ +.+....-.+
T Consensus 91 ~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~----~~~l~---~~gvd~~~~------------H~g~D~q~~G----- 146 (217)
T COG0269 91 DDATIKKAIKVAKEYGKEVQIDLIGVWDPEQR----AKWLK---ELGVDQVIL------------HRGRDAQAAG----- 146 (217)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeecCCCHHHH----HHHHH---HhCCCEEEE------------EecccHhhcC-----
Confidence 36778999999999999999999877541110 00000 000000011 0000000000
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcCCCcEEEeecCC
Q 018833 95 APDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDS 157 (350)
Q Consensus 95 ~~dln~~n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~p~~~~~E~~~~ 157 (350)
..+. ...++.++...+ .|+++-.+..+.++-++.+...--..+++|-....
T Consensus 147 ---~~~~-----~~~l~~ik~~~~----~g~~vAVaGGI~~~~i~~~~~~~~~ivIvGraIt~ 197 (217)
T COG0269 147 ---KSWG-----EDDLEKIKKLSD----LGAKVAVAGGITPEDIPLFKGIGADIVIVGRAITG 197 (217)
T ss_pred ---CCcc-----HHHHHHHHHhhc----cCceEEEecCCCHHHHHHHhcCCCCEEEECchhcC
Confidence 1111 234455555554 45899999999998888876543336688877754
No 403
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=26.49 E-value=75 Score=30.45 Aligned_cols=28 Identities=25% Similarity=0.501 Sum_probs=23.5
Q ss_pred CCCCC-CHHHHHHHHHHHHHCCCEEEEEE
Q 018833 10 ASKYG-SQADLKSLIQAFRQKGIKCLADM 37 (350)
Q Consensus 10 ~~~~G-t~~d~~~lv~~aH~~Gi~VilD~ 37 (350)
|.-+| ..++++.+++.||++|.-|++=.
T Consensus 219 P~~~G~~~~d~~~l~~~~h~~~al~~v~a 247 (450)
T COG0403 219 PNTFGIVEEDLRALIEAAHSAGALVIVAA 247 (450)
T ss_pred CCCCCccchhHHHHHHHHhhcCCEEEEEe
Confidence 56788 67889999999999999777543
No 404
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=26.46 E-value=61 Score=30.40 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=28.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 7 DLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 7 ~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
.+. ..-|+..+++++++.||+.|+.+++|-+--
T Consensus 151 ~v~-s~~G~i~pl~eI~~l~~~~~~~livDea~~ 183 (370)
T PRK05937 151 SVY-SFKGTLAPLEQIIALSKKYHAHLIVDEAHA 183 (370)
T ss_pred cCC-CCCCCccCHHHHHHHHHHcCCEEEEECCcc
Confidence 355 667889999999999999999999998863
No 405
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=26.41 E-value=64 Score=30.10 Aligned_cols=21 Identities=5% Similarity=0.117 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHCCCEEEEE
Q 018833 16 QADLKSLIQAFRQKGIKCLAD 36 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD 36 (350)
++++.+++++||+.||-||+=
T Consensus 178 l~~l~~i~~ea~~~GlPlv~~ 198 (348)
T PRK09250 178 IEEISEAFEEAHELGLATVLW 198 (348)
T ss_pred HHHHHHHHHHHHHhCCCEEEE
Confidence 578899999999999999983
No 406
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=26.33 E-value=75 Score=26.78 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHCCCEEEE
Q 018833 16 QADLKSLIQAFRQKGIKCLA 35 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~Vil 35 (350)
.+.+++||+.|+++|++||+
T Consensus 105 ~~~l~~ii~~~~~~~~~vil 124 (204)
T cd01830 105 IAGYRQLIRRAHARGIKVIG 124 (204)
T ss_pred HHHHHHHHHHHHHCCCeEEE
Confidence 46789999999999999986
No 407
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=26.32 E-value=50 Score=35.26 Aligned_cols=33 Identities=21% Similarity=0.142 Sum_probs=28.7
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCC
Q 018833 10 ASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 42 (350)
Q Consensus 10 ~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~ 42 (350)
|..+|..+|++++++.+|++|--++++..++-.
T Consensus 203 Pn~~G~ied~~~i~~~~h~~gal~~~~ad~~al 235 (939)
T TIGR00461 203 PATDGSILDYKQLIDALHSHKSLVSVAADLMAL 235 (939)
T ss_pred CCCCeEEecHHHHHHHHHHcCCEEEEEechHHh
Confidence 678999999999999999999999987766643
No 408
>cd07354 HN_L-delphilin-R1_like First harmonin_N_like domain (repeat 1) of L-delphilin, and related domains. This subgroup contains the first of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin, isoform 1), and related domains. Delphilin is a scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. The N-terminus of L-delphilin contains this harmonin_N_like domain preceded by a postsynaptic density-95/discs-large/ZO-1 (PDZ) protein-binding domain, PDZ1. L-delphilin, in common with the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta) has a second harmonin_N_like domain (not belonging to this subgroup) and a second PDZ domain, PDZ2. This first harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=26.31 E-value=36 Score=24.24 Aligned_cols=46 Identities=7% Similarity=0.083 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcCC
Q 018833 102 NPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSP 147 (350)
Q Consensus 102 n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~p 147 (350)
.|...+++.++++-+..+..||+|=-+-+..++.+.-+.++.++++
T Consensus 19 dp~~Ke~l~~aLk~Ya~~k~vd~l~~aL~~~L~~e~~~~Lld~IR~ 64 (80)
T cd07354 19 DPVKKEQVFAALKQYAADKNVDCLVWALCGLLQTEAHKKLLDEIRI 64 (80)
T ss_pred CHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhCcHHHHHHHHHhHh
Confidence 4678999999999888889999998887777777766777777765
No 409
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=26.29 E-value=88 Score=29.09 Aligned_cols=29 Identities=14% Similarity=0.263 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
+.++++++++.|+++|+.||.|=++-...
T Consensus 159 ~~~~~~~l~~~a~~~~~~ii~De~Y~~~~ 187 (354)
T PRK06358 159 SKEEMKKILDKCEKRNIYLIIDEAFMDFL 187 (354)
T ss_pred CHHHHHHHHHHHHhcCCEEEEeCcccccC
Confidence 47899999999999999999999986554
No 410
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=26.15 E-value=74 Score=30.19 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
.++++++++.|+++|+-||.|=++....
T Consensus 192 ~~~~~~l~~~a~~~~~~iI~De~y~~~~ 219 (402)
T TIGR03542 192 KEQLKELVDYANEHGSLILFDAAYSAFI 219 (402)
T ss_pred HHHHHHHHHHHHHcCeEEEEEchhhhhc
Confidence 7899999999999999999999887553
No 411
>PRK09265 aminotransferase AlaT; Validated
Probab=26.14 E-value=77 Score=30.05 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
+.++++++++.|+++|+-||.|-++.+..
T Consensus 186 ~~~~~~~i~~~a~~~~~~ii~De~y~~~~ 214 (404)
T PRK09265 186 SKELLEEIVEIARQHNLIIFADEIYDKIL 214 (404)
T ss_pred CHHHHHHHHHHHHHCCCEEEEehhhhhcc
Confidence 37889999999999999999998887654
No 412
>PRK08363 alanine aminotransferase; Validated
Probab=26.04 E-value=63 Score=30.59 Aligned_cols=29 Identities=14% Similarity=0.298 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
+.++++++++.|+++|+.||.|-++.+..
T Consensus 184 ~~~~~~~l~~~a~~~~~~li~Deay~~~~ 212 (398)
T PRK08363 184 EKKTLKEILDIAGEHDLPVISDEIYDLMT 212 (398)
T ss_pred CHHHHHHHHHHHHHcCeEEEEhhhhhhhc
Confidence 57899999999999999999999987654
No 413
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=25.79 E-value=75 Score=28.17 Aligned_cols=24 Identities=25% Similarity=0.570 Sum_probs=19.5
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEE
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADM 37 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~ 37 (350)
.+||+.++|++|+ ++++|++|+|.
T Consensus 49 G~l~~~~~l~~~l---~~~~i~~VIDA 72 (248)
T PRK08057 49 GGFGGAEGLAAYL---REEGIDLVIDA 72 (248)
T ss_pred CCCCCHHHHHHHH---HHCCCCEEEEC
Confidence 5677778888776 79999999995
No 414
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=25.77 E-value=1.1e+02 Score=22.67 Aligned_cols=29 Identities=28% Similarity=0.484 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHH----CCC-EEEEEEeccCC
Q 018833 14 GSQADLKSLIQAFRQ----KGI-KCLADMVINHR 42 (350)
Q Consensus 14 Gt~~d~~~lv~~aH~----~Gi-~VilD~V~NH~ 42 (350)
|..+++-++|++||+ .|. +|+..+-+++-
T Consensus 46 Ge~dev~~~i~~~~e~~~~~G~~Rv~t~ikid~R 79 (97)
T TIGR00106 46 GDLDELFEAIKAIHEAVLEKGSDRVYTSIKIDTR 79 (97)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEec
Confidence 456777777777665 466 99999988854
No 415
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=25.77 E-value=79 Score=29.94 Aligned_cols=34 Identities=18% Similarity=0.369 Sum_probs=29.3
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCCC
Q 018833 10 ASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERK 47 (350)
Q Consensus 10 ~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~~ 47 (350)
|.+.||+.+.-..|+-||+.|+++|+ -|-|.+..
T Consensus 335 ~NQIGTLTEt~~ai~~A~~~gy~~vi----SHRSGETe 368 (423)
T COG0148 335 PNQIGTLTETLEAINLAKDAGYTAVI----SHRSGETE 368 (423)
T ss_pred chhcccHHHHHHHHHHHHHCCCeEEE----ecCCCCcc
Confidence 56899999999999999999999875 78877653
No 416
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=25.67 E-value=60 Score=30.74 Aligned_cols=30 Identities=10% Similarity=0.093 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
...|..-+++++++.||++|+.||+|-++-
T Consensus 147 NPtG~~~dl~~I~~la~~~g~~vvvD~a~~ 176 (382)
T TIGR02080 147 NPLLRVVDIAKICHLAKAVGAVVVVDNTFL 176 (382)
T ss_pred CCCCEecCHHHHHHHHHHcCCEEEEECCCc
Confidence 566777889999999999999999999874
No 417
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=25.60 E-value=74 Score=29.93 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=27.8
Q ss_pred CcccCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Q 018833 3 GRLYDLDASKYGSQADLKSLIQAFRQKGIKCL 34 (350)
Q Consensus 3 ~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~Vi 34 (350)
.|..++|+.+.|+..+.+++...|+++|++++
T Consensus 262 ~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~ 293 (368)
T TIGR02534 262 ADVFALKTTKSGGLLESKKIAAIAEAAGIALY 293 (368)
T ss_pred CCEEEEcccccCCHHHHHHHHHHHHHcCCcee
Confidence 46777886678999999999999999999974
No 418
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=25.55 E-value=92 Score=25.46 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEE
Q 018833 14 GSQADLKSLIQAFRQKGIKCLADM 37 (350)
Q Consensus 14 Gt~~d~~~lv~~aH~~Gi~VilD~ 37 (350)
=+.+.+.++++.+.++|++||+=+
T Consensus 37 Rtp~~~~~~~~~a~~~g~~viIa~ 60 (156)
T TIGR01162 37 RTPELMLEYAKEAEERGIKVIIAG 60 (156)
T ss_pred cCHHHHHHHHHHHHHCCCeEEEEe
Confidence 367899999999999999888644
No 419
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=25.50 E-value=78 Score=25.56 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEE
Q 018833 12 KYGSQADLKSLIQAFRQKGIKCLA 35 (350)
Q Consensus 12 ~~Gt~~d~~~lv~~aH~~Gi~Vil 35 (350)
.-|...+..+.++.|+++|+++|.
T Consensus 88 ~sG~t~~~~~~~~~a~~~g~~ii~ 111 (154)
T TIGR00441 88 TSGNSKNVLKAIEAAKDKGMKTIT 111 (154)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEE
Confidence 456678999999999999999985
No 420
>PRK06107 aspartate aminotransferase; Provisional
Probab=25.48 E-value=72 Score=30.26 Aligned_cols=32 Identities=25% Similarity=0.436 Sum_probs=27.4
Q ss_pred CCCC---CHHHHHHHHHHHHHC-CCEEEEEEeccCC
Q 018833 11 SKYG---SQADLKSLIQAFRQK-GIKCLADMVINHR 42 (350)
Q Consensus 11 ~~~G---t~~d~~~lv~~aH~~-Gi~VilD~V~NH~ 42 (350)
...| +.++++++++.|+++ |+.||.|-++.+.
T Consensus 177 NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l 212 (402)
T PRK06107 177 NPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHI 212 (402)
T ss_pred CCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhcccc
Confidence 4566 588999999999997 9999999888765
No 421
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=25.37 E-value=76 Score=29.40 Aligned_cols=36 Identities=14% Similarity=0.354 Sum_probs=29.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCC
Q 018833 7 DLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 44 (350)
Q Consensus 7 ~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~ 44 (350)
.|+|..+|+.+.++.+|++|.++|+-|=+= .||-|-
T Consensus 98 RINPGNig~~e~v~~vv~~ak~~~ipIRIG--VN~GSL 133 (346)
T TIGR00612 98 RINPGNIGFRERVRDVVEKARDHGKAMRIG--VNHGSL 133 (346)
T ss_pred EECCCCCCCHHHHHHHHHHHHHCCCCEEEe--cCCCCC
Confidence 455889999999999999999999876543 466653
No 422
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=25.34 E-value=69 Score=30.42 Aligned_cols=29 Identities=21% Similarity=0.232 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 12 KYGSQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 12 ~~Gt~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
.-|...+++++++.||++|+.+|+|=+.-
T Consensus 150 ~~G~i~~l~~i~~l~~~~g~~livDe~~~ 178 (392)
T PLN03227 150 NTGTLAPLKELVALKEEFHYRLILDESFS 178 (392)
T ss_pred CCCcccCHHHHHHHHHHcCCEEEEECccc
Confidence 45778889999999999999999999874
No 423
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=25.23 E-value=88 Score=29.10 Aligned_cols=29 Identities=14% Similarity=0.161 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
+.++++++++.|+++|+-||.|=++.+..
T Consensus 166 ~~~~~~~i~~~a~~~~~~ii~De~y~~~~ 194 (364)
T PRK07865 166 GVDHLRKVVAWARERGAVVASDECYLELG 194 (364)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecchhhhc
Confidence 57999999999999999999999987664
No 424
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=25.21 E-value=64 Score=30.73 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=25.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEe
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMV 38 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V 38 (350)
+.+|...+++++++.||++|+.||+|-+
T Consensus 174 ~~~~~~~~~~~I~~la~~~~~~livD~a 201 (416)
T PRK00011 174 SAYSRPIDFKRFREIADEVGAYLMVDMA 201 (416)
T ss_pred CcCCCccCHHHHHHHHHHcCCEEEEECc
Confidence 6677777899999999999999999986
No 425
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=25.19 E-value=1e+02 Score=27.35 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
..=++.+|+-||+.||+||..-|=+
T Consensus 192 ~~iv~~iv~la~~l~~~vvaEGVEt 216 (256)
T COG2200 192 QAIVRAIVALAHKLGLTVVAEGVET 216 (256)
T ss_pred HHHHHHHHHHHHHCCCEEEEeecCC
Confidence 3569999999999999999998844
No 426
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=25.18 E-value=68 Score=30.51 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHHHHHHCC-CEEEEEEec
Q 018833 12 KYGSQADLKSLIQAFRQKG-IKCLADMVI 39 (350)
Q Consensus 12 ~~Gt~~d~~~lv~~aH~~G-i~VilD~V~ 39 (350)
.....-|++++++.||++| +.||+|=.+
T Consensus 152 P~l~v~Dl~~i~~~a~~~g~~~~vVDnT~ 180 (386)
T PF01053_consen 152 PTLEVPDLEAIAKLAKEHGDILVVVDNTF 180 (386)
T ss_dssp TTTB---HHHHHHHHHHTTT-EEEEECTT
T ss_pred cccccccHHHHHHHHHHhCCceEEeeccc
Confidence 3456778999999999999 999999554
No 427
>PRK08354 putative aminotransferase; Provisional
Probab=25.17 E-value=77 Score=28.84 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
+.+++++|++.|+++|+-||.|=++-...
T Consensus 135 ~~~~l~~l~~~a~~~~~~li~De~y~~f~ 163 (311)
T PRK08354 135 NFKELKPLLDAVEDRNALLILDEAFIDFV 163 (311)
T ss_pred CHHHHHHHHHHhhhcCcEEEEeCcchhcc
Confidence 37899999999999999999998886543
No 428
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=25.03 E-value=65 Score=30.24 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=26.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEe
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMV 38 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V 38 (350)
...|...+++++.+.||++|+.|++|-+
T Consensus 151 n~tG~~~~~~~I~~la~~~g~~~ivD~a 178 (382)
T TIGR03403 151 NETGMIFPIKEIGEICKERGVLFHTDAV 178 (382)
T ss_pred CCCccccCHHHHHHHHHHcCCEEEEech
Confidence 6788888899999999999999999998
No 429
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=25.00 E-value=82 Score=29.66 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEe
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMV 38 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V 38 (350)
+.+.+.++++.||++|++|++|+.
T Consensus 189 ~~~~~~~~~~~A~~~g~~v~lD~s 212 (367)
T PLN02379 189 NLEVIEAAIRLAKQEGLSVSLDLA 212 (367)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecc
Confidence 367899999999999999999984
No 430
>PRK08227 autoinducer 2 aldolase; Validated
Probab=24.84 E-value=86 Score=28.12 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHCCCEEEE
Q 018833 16 QADLKSLIQAFRQKGIKCLA 35 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~Vil 35 (350)
++++.+++++||+.||-||.
T Consensus 126 l~~l~~v~~ea~~~G~Plla 145 (264)
T PRK08227 126 IKNIIQLVDAGLRYGMPVMA 145 (264)
T ss_pred HHHHHHHHHHHHHhCCcEEE
Confidence 56889999999999999998
No 431
>PRK06460 hypothetical protein; Provisional
Probab=24.82 E-value=75 Score=30.00 Aligned_cols=29 Identities=14% Similarity=0.225 Sum_probs=25.3
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEec
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
..-|..-+++++++.||++|+.||+|-++
T Consensus 141 NPtG~v~d~~~I~~la~~~g~~vivDea~ 169 (376)
T PRK06460 141 NPLLRVVDITELSKVCKENGSILIVDATF 169 (376)
T ss_pred CCCCcccCHHHHHHHHHHcCCEEEEECCc
Confidence 45688888899999999999999999764
No 432
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=24.63 E-value=59 Score=31.48 Aligned_cols=24 Identities=13% Similarity=0.261 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHCCCEEEEEEecc
Q 018833 17 ADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 17 ~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
-|+.++++.||++|+.||.|-++.
T Consensus 164 ~Di~~I~~iA~~~gi~livD~T~~ 187 (432)
T PRK06702 164 LNFKEFSDAAKELEVPFIVDNTLA 187 (432)
T ss_pred cCHHHHHHHHHHcCCEEEEECCCC
Confidence 389999999999999999998863
No 433
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=24.59 E-value=91 Score=30.30 Aligned_cols=33 Identities=9% Similarity=0.222 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCC
Q 018833 12 KYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 44 (350)
Q Consensus 12 ~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~ 44 (350)
-+++.+.+..+++.++++|++|++|-|+-..+.
T Consensus 79 ~l~~~e~~~~i~~~~k~~g~~vv~DPv~~~~sG 111 (448)
T PRK08573 79 MLSNREIIEAVAKTVSKYGFPLVVDPVMIAKSG 111 (448)
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEcCccccCCC
Confidence 366789999999999999999999998875543
No 434
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=24.46 E-value=92 Score=29.10 Aligned_cols=24 Identities=13% Similarity=0.120 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEec
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
.+.+++++++||+.||-+++.+++
T Consensus 142 ~~~l~rv~~ec~~~giPlllE~l~ 165 (340)
T PRK12858 142 HAFVERVGAECRANDIPFFLEPLT 165 (340)
T ss_pred HHHHHHHHHHHHHcCCceEEEEec
Confidence 457999999999999999998643
No 435
>PRK07550 hypothetical protein; Provisional
Probab=24.44 E-value=82 Score=29.60 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVINHR 42 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~NH~ 42 (350)
+.++++++++.|+++|+-||.|-++-..
T Consensus 181 ~~~~~~~i~~~~~~~~~~iI~Dd~y~~~ 208 (386)
T PRK07550 181 PPELLHELYDLARRHGIALILDETYRDF 208 (386)
T ss_pred CHHHHHHHHHHHHHcCeEEEEeccchhh
Confidence 4788999999999999999999988644
No 436
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=24.42 E-value=80 Score=29.43 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
.++++++++.|+++|.-||+|=+.-
T Consensus 154 ~~~L~~i~~la~~~~~~livDEAy~ 178 (346)
T TIGR03576 154 EEDLKRVIKQAKSKEAIVLVDDASG 178 (346)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCcc
Confidence 5999999999999999999998753
No 437
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=24.42 E-value=69 Score=34.55 Aligned_cols=28 Identities=7% Similarity=0.092 Sum_probs=23.8
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEe
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMV 38 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V 38 (350)
...|.+++++++++.||++|..|++|.+
T Consensus 677 n~gg~e~~I~eI~~iah~~Galv~vDgA 704 (993)
T PLN02414 677 THGVYEEGIDEICDIIHDNGGQVYMDGA 704 (993)
T ss_pred ccccccchHHHHHHHHHHcCCEEEEEec
Confidence 3445566799999999999999999987
No 438
>PF15614 WHIM3: WSTF, HB1, Itc1p, MBD9 motif 3
Probab=24.39 E-value=51 Score=20.86 Aligned_cols=19 Identities=21% Similarity=0.536 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHH-HHCCCE
Q 018833 14 GSQADLKSLIQAF-RQKGIK 32 (350)
Q Consensus 14 Gt~~d~~~lv~~a-H~~Gi~ 32 (350)
-+.+++.+|++++ |-+|++
T Consensus 5 ~~~e~ld~L~~aL~~prG~R 24 (46)
T PF15614_consen 5 DDPEELDELLKALENPRGKR 24 (46)
T ss_pred cCHHHHHHHHHHHcCcccHh
Confidence 3788999999999 888875
No 439
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=24.39 E-value=84 Score=26.76 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEE
Q 018833 12 KYGSQADLKSLIQAFRQKGIKCLA 35 (350)
Q Consensus 12 ~~Gt~~d~~~lv~~aH~~Gi~Vil 35 (350)
.=|.-.++.+.++.|+++|++||.
T Consensus 118 ~SG~s~~v~~a~~~Ak~~G~~vI~ 141 (196)
T PRK10886 118 TRGNSRDIVKAVEAAVTRDMTIVA 141 (196)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEE
Confidence 346778899999999999999985
No 440
>PRK07681 aspartate aminotransferase; Provisional
Probab=24.34 E-value=83 Score=29.78 Aligned_cols=29 Identities=14% Similarity=0.139 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
+.++++++++.|+++|+-||.|=++.+..
T Consensus 184 s~~~~~~i~~~a~~~~~~iI~De~y~~~~ 212 (399)
T PRK07681 184 HEDFFKEVIAFAKKHNIIVVHDFAYAEFY 212 (399)
T ss_pred CHHHHHHHHHHHHHcCeEEEEeccchhhe
Confidence 47899999999999999999999987654
No 441
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=24.26 E-value=1e+02 Score=26.07 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEEE
Q 018833 16 QADLKSLIQAFRQKGIKCLADM 37 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~ 37 (350)
.....++++.|+++||++++++
T Consensus 88 ~~~~~~~i~~~~~~g~~~~~~~ 109 (206)
T TIGR03128 88 DATIKGAVKAAKKHGKEVQVDL 109 (206)
T ss_pred HHHHHHHHHHHHHcCCEEEEEe
Confidence 3567899999999999999975
No 442
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=24.08 E-value=95 Score=29.82 Aligned_cols=34 Identities=12% Similarity=0.334 Sum_probs=29.9
Q ss_pred CcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Q 018833 3 GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLAD 36 (350)
Q Consensus 3 ~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD 36 (350)
.|..++++++.|+..+.+++++-|+++||.+++-
T Consensus 321 ~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g 354 (408)
T TIGR01502 321 GHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVG 354 (408)
T ss_pred CCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 4566777788999999999999999999999874
No 443
>PLN00191 enolase
Probab=24.02 E-value=92 Score=30.41 Aligned_cols=39 Identities=15% Similarity=0.287 Sum_probs=31.1
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCC
Q 018833 4 RLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 46 (350)
Q Consensus 4 d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~ 46 (350)
|...+++.+.||..+.++.++-|+++|+.+++ .|.+.+.
T Consensus 362 d~i~iKl~qiGGITea~~~a~lA~~~G~~~~i----shrsgET 400 (457)
T PLN00191 362 NALLLKVNQIGTVTESIEAVKMSKAAGWGVMT----SHRSGET 400 (457)
T ss_pred CEEEecccccCCHHHHHHHHHHHHHCCCEEEe----CCCCccc
Confidence 45556667899999999999999999999874 6644443
No 444
>PRK08068 transaminase; Reviewed
Probab=23.95 E-value=83 Score=29.63 Aligned_cols=27 Identities=11% Similarity=0.148 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHR 42 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~ 42 (350)
.++++++++.|+++|+-||.|=++...
T Consensus 186 ~~~~~~l~~la~~~~~~ii~Deay~~~ 212 (389)
T PRK08068 186 KAFFEETVAFAKKHNIGVVHDFAYGAI 212 (389)
T ss_pred HHHHHHHHHHHHHcCeEEEEehhhhhh
Confidence 799999999999999999999887543
No 445
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=23.90 E-value=99 Score=29.07 Aligned_cols=33 Identities=9% Similarity=0.036 Sum_probs=28.9
Q ss_pred CcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 018833 3 GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 35 (350)
Q Consensus 3 ~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~Vil 35 (350)
.|..++|+.+.|+..+.+++++.|+++|+.++.
T Consensus 265 ~d~v~~d~~~~GGit~~~~ia~~a~~~gi~~~~ 297 (368)
T cd03329 265 TDFLRADVNLVGGITGAMKTAHLAEAFGLDVEL 297 (368)
T ss_pred CCEEecCccccCCHHHHHHHHHHHHHcCCEEEE
Confidence 466778866779999999999999999999975
No 446
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=23.83 E-value=5.2e+02 Score=23.00 Aligned_cols=39 Identities=13% Similarity=0.072 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhcC
Q 018833 107 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMENTS 146 (350)
Q Consensus 107 ~~l~~~~~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~~ 146 (350)
+.+.+.++...+ .|+|.+++ |++..+.++-..++++.++
T Consensus 141 ~~l~~~~~~~~~-~g~~~i~l~Dt~G~~~P~~v~~~~~~~~ 180 (262)
T cd07948 141 VDLLRVYRAVDK-LGVNRVGIADTVGIATPRQVYELVRTLR 180 (262)
T ss_pred HHHHHHHHHHHH-cCCCEEEECCcCCCCCHHHHHHHHHHHH
Confidence 345666666666 89998876 7777777777777755543
No 447
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=23.81 E-value=88 Score=30.19 Aligned_cols=40 Identities=15% Similarity=0.330 Sum_probs=32.8
Q ss_pred CcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCC
Q 018833 3 GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 46 (350)
Q Consensus 3 ~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~ 46 (350)
.|...+++.+.||..+.++.++.|+++|+.++ +.|.+.+.
T Consensus 330 ~d~v~ik~~~iGGItea~~ia~lA~~~Gi~~v----v~h~sgEt 369 (425)
T TIGR01060 330 ANSILIKPNQIGTLTETLDAVELAKKAGYTAV----ISHRSGET 369 (425)
T ss_pred CCEEEecccccCCHHHHHHHHHHHHHcCCcEE----EecCCccc
Confidence 45666777789999999999999999999976 35887654
No 448
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=23.69 E-value=1.1e+02 Score=29.18 Aligned_cols=30 Identities=17% Similarity=0.280 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEEeccCC
Q 018833 13 YGSQADLKSLIQAFRQKGIKCLADMVINHR 42 (350)
Q Consensus 13 ~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~ 42 (350)
.++.+.+++.++++++.|+++++|+.=-++
T Consensus 259 ea~~~ti~~ai~~akk~GikvgVD~lnp~t 288 (391)
T PRK13307 259 LAPISTIEKAIHEAQKTGIYSILDMLNVED 288 (391)
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEEEcCCCC
Confidence 456778999999999999999999753243
No 449
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=23.65 E-value=74 Score=30.12 Aligned_cols=30 Identities=20% Similarity=0.145 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
..-|+..+++++++.||++|+-+|+|-+.-
T Consensus 188 ~~~G~~~~l~~i~~l~~~~~~~livDea~~ 217 (402)
T TIGR01821 188 SMDGDIAPIEEICDLADKYGALTYLDEVHA 217 (402)
T ss_pred CCCCCccCHHHHHHHHHHcCCEEEEeCccc
Confidence 456888889999999999999999998853
No 450
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=23.61 E-value=80 Score=29.55 Aligned_cols=33 Identities=9% Similarity=0.081 Sum_probs=29.2
Q ss_pred CcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 018833 3 GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 35 (350)
Q Consensus 3 ~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~Vil 35 (350)
.|..++|+.+.|+..+.+++.+.|+++||+++.
T Consensus 259 ~div~~d~~~~GGit~~~~ia~~A~a~gi~~~~ 291 (352)
T cd03328 259 VDVLQADVTRCGGVTGFLQAAALAAAHHVDLSA 291 (352)
T ss_pred CCEEecCccccCCHHHHHHHHHHHHHcCCeecc
Confidence 467788866789999999999999999999885
No 451
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=23.58 E-value=1.9e+02 Score=24.58 Aligned_cols=38 Identities=21% Similarity=0.359 Sum_probs=28.9
Q ss_pred CCcccC-CCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 2 PGRLYD-LDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 2 p~d~~~-id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
|..+|. .+ -++-|..||.+| |.++||+|+=-++++.-.
T Consensus 134 Py~WYdTPN-ih~~Ti~DFe~l---c~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 134 PYEWYDTPN-IHLCTIKDFEDL---CRELGIRIEERVFLDGGR 172 (193)
T ss_pred CCcccCCCC-cccccHHHHHHH---HHHCCCEEEEEEEEcCCC
Confidence 444443 44 788899999988 567799999999998664
No 452
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=23.57 E-value=91 Score=29.74 Aligned_cols=33 Identities=12% Similarity=-0.008 Sum_probs=28.3
Q ss_pred CcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 018833 3 GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 35 (350)
Q Consensus 3 ~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~Vil 35 (350)
.|+.++|+.+.|+..+++++++.|+++|++++.
T Consensus 285 vdil~~d~~~~GGit~~~kia~~A~~~gi~~~~ 317 (395)
T cd03323 285 VDIPLADHHFWGGMRGSVRVAQVCETWGLGWGM 317 (395)
T ss_pred CcEEeeccccccCHHHHHHHHHHHHHcCCeEEE
Confidence 466677766789999999999999999999865
No 453
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=23.47 E-value=91 Score=29.43 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
+.++++++++.|+++|+-||+|-++-...
T Consensus 184 s~~~~~~l~~~~~~~~~~ii~D~~y~~~~ 212 (391)
T PRK07309 184 SREQIKALADVLKKYDIFVISDEVYSELT 212 (391)
T ss_pred CHHHHHHHHHHHHHcCcEEEEEcccccee
Confidence 37899999999999999999999876543
No 454
>cd08571 GDPD_SHV3_plant Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase (GDPD) domain present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserv
Probab=23.40 E-value=65 Score=29.45 Aligned_cols=16 Identities=19% Similarity=0.412 Sum_probs=14.5
Q ss_pred HHHHHHHHHCCCEEEE
Q 018833 20 KSLIQAFRQKGIKCLA 35 (350)
Q Consensus 20 ~~lv~~aH~~Gi~Vil 35 (350)
..+|++||++||+|..
T Consensus 241 ~~~V~~ah~~Gl~V~~ 256 (302)
T cd08571 241 TSVVQDAHKAGLEVYV 256 (302)
T ss_pred cHHHHHHHHcCCEEEE
Confidence 4889999999999986
No 455
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=23.32 E-value=96 Score=32.02 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHCCCEEEEEE
Q 018833 16 QADLKSLIQAFRQKGIKCLADM 37 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~ 37 (350)
.++|++|++.||+.||.+++.+
T Consensus 146 ~~~l~~l~~~a~~lGme~LvEv 167 (695)
T PRK13802 146 DAQLKHLLDLAHELGMTVLVET 167 (695)
T ss_pred HHHHHHHHHHHHHcCCeEEEEe
Confidence 5689999999999999999997
No 456
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=23.16 E-value=88 Score=30.97 Aligned_cols=29 Identities=10% Similarity=0.264 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
+.++++++++.|+++|+-||.|=++.+..
T Consensus 299 ~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~ 327 (517)
T PRK13355 299 PREVLQQIVDIAREHQLIIFSDEIYDRLV 327 (517)
T ss_pred CHHHHHHHHHHHHHcCcEEEEehhhhhhc
Confidence 47899999999999999999999998765
No 457
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=23.16 E-value=71 Score=28.58 Aligned_cols=16 Identities=19% Similarity=0.470 Sum_probs=14.5
Q ss_pred HHHHHHHHHC-CCEEEE
Q 018833 20 KSLIQAFRQK-GIKCLA 35 (350)
Q Consensus 20 ~~lv~~aH~~-Gi~Vil 35 (350)
+++|++||++ ||+|..
T Consensus 219 ~~~V~~~h~~~gl~V~~ 235 (263)
T cd08580 219 PAAVDCFRRNSKVKIVL 235 (263)
T ss_pred HHHHHHHHhcCCcEEEE
Confidence 6789999999 999976
No 458
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=23.15 E-value=92 Score=25.10 Aligned_cols=20 Identities=35% Similarity=0.542 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHCCCEEEEE
Q 018833 17 ADLKSLIQAFRQKGIKCLAD 36 (350)
Q Consensus 17 ~d~~~lv~~aH~~Gi~VilD 36 (350)
+++..|++.++++|+++.++
T Consensus 75 ~~l~~ll~~lk~~Gl~i~l~ 94 (147)
T TIGR02826 75 EALLSLLKIFKEKGLKTCLY 94 (147)
T ss_pred HHHHHHHHHHHHCCCCEEEE
Confidence 67899999999999999877
No 459
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=23.04 E-value=1.1e+02 Score=27.82 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVINHR 42 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~NH~ 42 (350)
+.+++.+.|+.+++.||+|..|+.++--
T Consensus 161 t~~~~~~ai~~l~~~gi~v~~~lI~GlP 188 (302)
T TIGR01212 161 DFACYVDAVKRARKRGIKVCSHVILGLP 188 (302)
T ss_pred hHHHHHHHHHHHHHcCCEEEEeEEECCC
Confidence 5789999999999999999999998733
No 460
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=23.02 E-value=71 Score=30.02 Aligned_cols=17 Identities=12% Similarity=0.259 Sum_probs=15.0
Q ss_pred HHHHHHHHHHCCCEEEE
Q 018833 19 LKSLIQAFRQKGIKCLA 35 (350)
Q Consensus 19 ~~~lv~~aH~~Gi~Vil 35 (350)
...+|++||++||+|+.
T Consensus 280 ~~~~v~~Ah~~GL~V~~ 296 (356)
T cd08560 280 PSEYAKAAKAAGLDIIT 296 (356)
T ss_pred CHHHHHHHHHcCCEEEE
Confidence 46899999999999975
No 461
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=22.99 E-value=98 Score=28.43 Aligned_cols=26 Identities=15% Similarity=0.082 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
+.++++++++.|.++|+-||.|=++.
T Consensus 142 s~~~l~~l~~~~~~~~~~iI~DE~y~ 167 (330)
T PRK05664 142 DPARLLAWHARLAARGGWLVVDEAFM 167 (330)
T ss_pred CHHHHHHHHHHHHhcCCEEEEECCcc
Confidence 37899999999999999999996653
No 462
>PRK08636 aspartate aminotransferase; Provisional
Probab=22.98 E-value=94 Score=29.47 Aligned_cols=29 Identities=10% Similarity=0.181 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
+.++++++++.|+++++-||.|=++....
T Consensus 193 s~~~~~~l~~~a~~~~~~II~De~Y~~l~ 221 (403)
T PRK08636 193 EKSFYERLVALAKKERFYIISDIAYADIT 221 (403)
T ss_pred CHHHHHHHHHHHHHcCcEEEEeccchhhc
Confidence 37999999999999999999999987654
No 463
>PRK02948 cysteine desulfurase; Provisional
Probab=22.96 E-value=79 Score=29.60 Aligned_cols=30 Identities=13% Similarity=0.220 Sum_probs=26.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEEEEe
Q 018833 8 LDASKYGSQADLKSLIQAFRQKGIKCLADMV 38 (350)
Q Consensus 8 id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V 38 (350)
+. ..-|+..+++++++.||++|+.|++|-+
T Consensus 147 ~~-n~tG~~~~~~~I~~l~~~~~~~vivD~~ 176 (381)
T PRK02948 147 AN-SEIGTIQPIAEIGALLKKYNVLFHSDCV 176 (381)
T ss_pred Cc-CCcEeehhHHHHHHHHHHcCCEEEEECh
Confidence 44 6678899999999999999999999954
No 464
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=22.91 E-value=1.1e+02 Score=29.00 Aligned_cols=31 Identities=16% Similarity=0.038 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccCCCCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVINHRTAE 45 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~ 45 (350)
+.+.++++++-|+++|+-+|+|=|.-+.+..
T Consensus 203 ~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~ 233 (403)
T PRK05093 203 TPEFLQGLRELCDQHNALLIFDEVQTGMGRT 233 (403)
T ss_pred CHHHHHHHHHHHHHcCCEEEEechhhCCCCC
Confidence 6788999999999999999999997766543
No 465
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=22.74 E-value=70 Score=31.04 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=25.7
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEe
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMV 38 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V 38 (350)
+.+|...+++++.+.||++|..+++|.+
T Consensus 191 s~~g~~~di~~I~~i~~~~ga~l~vDaa 218 (452)
T PTZ00094 191 SAYPRDIDYKRFREICDSVGAYLMADIA 218 (452)
T ss_pred CCCCCccCHHHHHHHHHHcCCEEEEecc
Confidence 6688899999999999999999999986
No 466
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=22.73 E-value=98 Score=29.61 Aligned_cols=33 Identities=6% Similarity=0.008 Sum_probs=28.8
Q ss_pred CcccCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 018833 3 GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 35 (350)
Q Consensus 3 ~d~~~id~~~~Gt~~d~~~lv~~aH~~Gi~Vil 35 (350)
.|..++|+.+.|+..+.+++++.|.++|++|+.
T Consensus 281 ~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~ 313 (404)
T PRK15072 281 IDYIRTTVTHAGGITHLRRIADFAALYQVRTGS 313 (404)
T ss_pred CCEEecCccccCcHHHHHHHHHHHHHcCCceee
Confidence 466777767789999999999999999999975
No 467
>PF02113 Peptidase_S13: D-Ala-D-Ala carboxypeptidase 3 (S13) family; InterPro: IPR000667 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This family of serine peptidases belong to MEROPS peptidase family S13 (D-Ala-D-Ala carboxypeptidase C, clan SE). The predicted active site residues for members of this family and family S12 occur in the motif SXXK. D-Ala-D-Ala carboxypeptidase C is involved in the metabolism of cell components []; it is synthesised with a leader peptide to target it to the cell membrane []. After cleavage of the leader peptide, the enzyme is retained in the membrane by a C-terminal anchor []. There are three families of serine-type D-Ala-D-Ala peptidase (designated S11, S12 and S13), which are also known as low molecular weight penicillin-binding proteins []. Family S13 comprises D-Ala-D-Ala peptidases that have sufficient sequence similarity around their active sites to assume a distant evolutionary relationship to other clan members; members of the S13 family also bind penicillin and have D-amino-peptidase activity. Proteases of family S11 have exclusive D-Ala-D-Ala peptidase activity, while some members of S12 are C beta-lactamases [].; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 3A3F_B 3A3E_B 3A3D_A 3A3I_B 2Y59_C 1W8Q_A 3ZVT_B 3ZVW_B 2VGJ_B 1W79_D ....
Probab=22.70 E-value=82 Score=30.60 Aligned_cols=35 Identities=20% Similarity=0.382 Sum_probs=26.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEE-EEEeccCCCCCC
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCL-ADMVINHRTAER 46 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~Vi-lD~V~NH~s~~~ 46 (350)
|.|++.+ |.+|+++++++||+-| -+++++..-.+.
T Consensus 92 P~l~~~~-l~~la~~l~~~Gi~~I~g~i~~D~s~f~~ 127 (444)
T PF02113_consen 92 PSLTSED-LWALAAQLKAAGIKRITGDIILDDSLFDG 127 (444)
T ss_dssp TTBCHHH-HHHHHHHHHHTT-SEESSEEEEETTTC-S
T ss_pred CccCHHH-HHHHHHHHHHcCCCeEeeEEEEECcccCC
Confidence 6665554 9999999999999888 788877665544
No 468
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=22.68 E-value=6.2e+02 Score=23.76 Aligned_cols=38 Identities=24% Similarity=0.194 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhc
Q 018833 107 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMENT 145 (350)
Q Consensus 107 ~~l~~~~~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~ 145 (350)
+++.+.++...+ .|+|.+++ |++..+.+.-..++++.+
T Consensus 142 ~~l~~~~~~~~~-~Ga~~i~l~DT~G~~~P~~v~~lv~~l 180 (365)
T TIGR02660 142 DFLVELAEVAAE-AGADRFRFADTVGILDPFSTYELVRAL 180 (365)
T ss_pred HHHHHHHHHHHH-cCcCEEEEcccCCCCCHHHHHHHHHHH
Confidence 577777777766 89998776 777777777666665544
No 469
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=22.67 E-value=77 Score=30.10 Aligned_cols=30 Identities=13% Similarity=0.152 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
...|..-+++++++.||++|+.||+|-++-
T Consensus 148 NPtG~v~di~~I~~ia~~~g~~vivDeay~ 177 (386)
T PRK08045 148 NPLLRVVDIAKICHLAREAGAVSVVDNTFL 177 (386)
T ss_pred CCCCEecCHHHHHHHHHHcCCEEEEECCCC
Confidence 556777789999999999999999999864
No 470
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=22.67 E-value=79 Score=26.18 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=14.8
Q ss_pred HHHHHHHHHHCCCEEEE
Q 018833 19 LKSLIQAFRQKGIKCLA 35 (350)
Q Consensus 19 ~~~lv~~aH~~Gi~Vil 35 (350)
.+++|++||++|++|.+
T Consensus 138 ~~~~v~~~~~~g~~v~~ 154 (179)
T cd08555 138 DTELIASANKLGLLSRI 154 (179)
T ss_pred CHHHHHHHHHCCCEEEE
Confidence 57899999999999864
No 471
>PRK13937 phosphoheptose isomerase; Provisional
Probab=22.64 E-value=94 Score=26.08 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEE
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLA 35 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~Vil 35 (350)
..-|...+..+.++.|+++|+++|.
T Consensus 114 S~sG~t~~~~~~~~~ak~~g~~~I~ 138 (188)
T PRK13937 114 STSGNSPNVLAALEKARELGMKTIG 138 (188)
T ss_pred eCCCCcHHHHHHHHHHHHCCCeEEE
Confidence 3457788999999999999999985
No 472
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=22.63 E-value=1e+02 Score=27.28 Aligned_cols=26 Identities=23% Similarity=0.151 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINH 41 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH 41 (350)
.+.++..++.|+++|+-||||-|==.
T Consensus 65 ~~~m~~A~~~A~~~~~PvVLDPVgvG 90 (246)
T PF02110_consen 65 IEAMKKAAKAANELGIPVVLDPVGVG 90 (246)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-TTBT
T ss_pred HHHHHHHHHHHHHcCCCEEEeCcccC
Confidence 57788999999999999999998643
No 473
>PRK07682 hypothetical protein; Validated
Probab=22.55 E-value=95 Score=29.04 Aligned_cols=28 Identities=14% Similarity=0.292 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
.++++++++.|+++|+-||.|=++.+..
T Consensus 173 ~~~~~~l~~~~~~~~~~ii~De~y~~~~ 200 (378)
T PRK07682 173 KSELEEIAVIVEKHDLIVLSDEIYAELT 200 (378)
T ss_pred HHHHHHHHHHHHHcCcEEEEehhhhhcc
Confidence 5899999999999999999999987665
No 474
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=22.49 E-value=97 Score=29.41 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=25.8
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEec
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~ 39 (350)
..-|+..+++++.+.||++|+-+|+|-+.
T Consensus 188 ~~~G~~~~l~~i~~l~~~~~~~livDea~ 216 (406)
T PRK13393 188 SMDGDIAPIAEICDVAEKHGAMTYLDEVH 216 (406)
T ss_pred CCCCchhCHHHHHHHHHHcCCEEEEECCc
Confidence 55688899999999999999999999764
No 475
>PRK08114 cystathionine beta-lyase; Provisional
Probab=22.39 E-value=71 Score=30.50 Aligned_cols=29 Identities=17% Similarity=0.123 Sum_probs=25.2
Q ss_pred CCCCCHHHHHHHHHHHHHCC--CEEEEEEec
Q 018833 11 SKYGSQADLKSLIQAFRQKG--IKCLADMVI 39 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~G--i~VilD~V~ 39 (350)
...|...|++++++.||++| +.||+|-+.
T Consensus 158 Np~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~ 188 (395)
T PRK08114 158 SITMEVHDVPAIVAAVRSVNPDAVIMIDNTW 188 (395)
T ss_pred CCCCEeecHHHHHHHHHHhCCCCEEEEECCC
Confidence 55677889999999999985 999999775
No 476
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=22.38 E-value=92 Score=25.69 Aligned_cols=24 Identities=21% Similarity=0.497 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEE
Q 018833 12 KYGSQADLKSLIQAFRQKGIKCLA 35 (350)
Q Consensus 12 ~~Gt~~d~~~lv~~aH~~Gi~Vil 35 (350)
.-|...+..++++.|+++|++||.
T Consensus 110 ~SG~t~~~i~~~~~ak~~Ga~vI~ 133 (177)
T cd05006 110 TSGNSPNVLKALEAAKERGMKTIA 133 (177)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEE
Confidence 346678999999999999999985
No 477
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=22.36 E-value=53 Score=30.22 Aligned_cols=19 Identities=26% Similarity=0.555 Sum_probs=14.5
Q ss_pred HHHHHHHHCCCEEEEEEec
Q 018833 21 SLIQAFRQKGIKCLADMVI 39 (350)
Q Consensus 21 ~lv~~aH~~Gi~VilD~V~ 39 (350)
..|++||++|.+|+-=+.+
T Consensus 46 ~widaAHrnGV~vLGTiif 64 (311)
T PF03644_consen 46 GWIDAAHRNGVKVLGTIIF 64 (311)
T ss_dssp HHHHHHHHTT--EEEEEEE
T ss_pred hhHHHHHhcCceEEEEEEe
Confidence 3689999999999987777
No 478
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=22.29 E-value=72 Score=29.28 Aligned_cols=36 Identities=22% Similarity=0.419 Sum_probs=20.0
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCCCCC
Q 018833 6 YDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 46 (350)
Q Consensus 6 ~~id~~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~~ 46 (350)
|.|| |.. +=.+..+++.+.||.||+|+-.-+.|-+.
T Consensus 73 Y~vd-p~~----nHd~CM~~~~~aGIYvi~Dl~~p~~sI~r 108 (314)
T PF03198_consen 73 YSVD-PSK----NHDECMSAFADAGIYVILDLNTPNGSINR 108 (314)
T ss_dssp S----TTS------HHHHHHHHHTT-EEEEES-BTTBS--T
T ss_pred EEeC-CCC----CHHHHHHHHHhCCCEEEEecCCCCccccC
Confidence 5666 433 44566677788999999999877666554
No 479
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=22.19 E-value=80 Score=29.38 Aligned_cols=32 Identities=13% Similarity=0.227 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
..-|...+++++++.||++|+-||+|-+ .+.+
T Consensus 142 ~~tG~~~~~~~i~~l~~~~~~~livDa~-~~~g 173 (368)
T PRK13479 142 TTTGILNPLDEIAAVAKRHGKRLIVDAM-SSFG 173 (368)
T ss_pred CccccccCHHHHHHHHHHcCCEEEEEcc-cccC
Confidence 4578888899999999999999999954 3443
No 480
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=22.18 E-value=1.1e+02 Score=21.64 Aligned_cols=30 Identities=10% Similarity=0.247 Sum_probs=21.9
Q ss_pred ccCCCCCCCCC----HHHHHHHHHHHHHCCCEEEE
Q 018833 5 LYDLDASKYGS----QADLKSLIQAFRQKGIKCLA 35 (350)
Q Consensus 5 ~~~id~~~~Gt----~~d~~~lv~~aH~~Gi~Vil 35 (350)
+..|+ |.+.+ ..-++++++.|.++|++|+.
T Consensus 27 hT~V~-~~~rGqGia~~L~~~~l~~a~~~~~kv~p 60 (78)
T PF14542_consen 27 HTEVP-PELRGQGIAKKLVEAALDYARENGLKVVP 60 (78)
T ss_dssp EEEE--CSSSTTTHHHHHHHHHHHHHHHTT-EEEE
T ss_pred EEEEC-ccccCCcHHHHHHHHHHHHHHHCCCEEEE
Confidence 44555 77776 46788999999999999983
No 481
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=22.15 E-value=1e+02 Score=27.40 Aligned_cols=24 Identities=25% Similarity=0.617 Sum_probs=19.5
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEE
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADM 37 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~ 37 (350)
.+||+.++|++|+ +++||+.|+|.
T Consensus 50 G~lg~~~~l~~~l---~~~~i~~vIDA 73 (249)
T PF02571_consen 50 GRLGDEEGLAEFL---RENGIDAVIDA 73 (249)
T ss_pred CCCCCHHHHHHHH---HhCCCcEEEEC
Confidence 5677778777775 78999999996
No 482
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=22.02 E-value=1.1e+02 Score=26.95 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
+.++..++++.||++||++++=+-++
T Consensus 114 ~~~~~~~~~~~~~~~Gl~~~~~v~p~ 139 (244)
T PRK13125 114 YPDDLEKYVEIIKNKGLKPVFFTSPK 139 (244)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 35789999999999999999977775
No 483
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=21.92 E-value=88 Score=29.49 Aligned_cols=21 Identities=38% Similarity=0.637 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHCCCEEEEE
Q 018833 16 QADLKSLIQAFRQKGIKCLAD 36 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD 36 (350)
.++|+.++.+|.++||+||.-
T Consensus 57 ~~~L~~~L~~~~~~gIkvI~N 77 (362)
T PF07287_consen 57 VRDLRPLLPAAAEKGIKVITN 77 (362)
T ss_pred HHHHHHHHHHHHhCCCCEEEe
Confidence 568999999999999999864
No 484
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=21.88 E-value=95 Score=26.23 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEE
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLA 35 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~Vil 35 (350)
..-|...+...+++.|+++|+++|.
T Consensus 119 S~SG~t~~~i~~~~~ak~~g~~iI~ 143 (192)
T PRK00414 119 STSGNSGNIIKAIEAARAKGMKVIT 143 (192)
T ss_pred eCCCCCHHHHHHHHHHHHCCCeEEE
Confidence 3457778999999999999999985
No 485
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=21.87 E-value=1e+02 Score=29.13 Aligned_cols=28 Identities=32% Similarity=0.318 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVINHR 42 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~NH~ 42 (350)
+.+.++++++.|+++|+-||+|=|.-..
T Consensus 210 ~~~~l~~l~~l~~~~~~~li~Dev~~g~ 237 (413)
T cd00610 210 PPGYLKALRELCRKHGILLIADEVQTGF 237 (413)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 3566999999999999999999886533
No 486
>TIGR03368 cellulose_yhjU cellulose synthase operon protein YhjU. This protein was identified by the partial phylogenetic profiling algorithm (PubMed:16930487) as part of the system for cellulose biosynthesis in bacteria, and in fact is found in cellulose biosynthesis gene regions. The protein was designated YhjU in Salmonella enteritidis, where disruption of its gene disrupts cellulose biosynthesis and biofilm formation (PubMed:11929533).
Probab=21.85 E-value=1.2e+02 Score=29.69 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRTA 44 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s~ 44 (350)
++||.+|+++..+.|=+||+=+||.|-+.
T Consensus 379 lddld~F~~~le~SgR~vvVv~VPEHGAA 407 (518)
T TIGR03368 379 LDDLDRFFDELEKSGRKVVVVLVPEHGAA 407 (518)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEecCcchh
Confidence 58999999999999999999999999764
No 487
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=21.81 E-value=80 Score=30.16 Aligned_cols=30 Identities=10% Similarity=0.137 Sum_probs=24.3
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
...-...|++++.+.||++|+.||+|=.+-
T Consensus 160 NP~l~v~DI~~i~~~A~~~g~~vvVDNTfa 189 (396)
T COG0626 160 NPLLEVPDIPAIARLAKAYGALVVVDNTFA 189 (396)
T ss_pred CcccccccHHHHHHHHHhcCCEEEEECCcc
Confidence 344456789999999999999999996553
No 488
>PLN02231 alanine transaminase
Probab=21.54 E-value=1.1e+02 Score=30.63 Aligned_cols=30 Identities=20% Similarity=0.389 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccCCCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVINHRTA 44 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~NH~s~ 44 (350)
+.++++++++-|+++|+-||.|=|+.+...
T Consensus 289 s~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y 318 (534)
T PLN02231 289 AEENQRDIVEFCKQEGLVLLADEVYQENVY 318 (534)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEccchhccc
Confidence 379999999999999999999999988753
No 489
>PRK11596 cyclic-di-GMP phosphodiesterase; Provisional
Probab=21.45 E-value=1e+02 Score=27.18 Aligned_cols=38 Identities=5% Similarity=0.021 Sum_probs=28.0
Q ss_pred CCcccCCCCCCC--------CCHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 2 PGRLYDLDASKY--------GSQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 2 p~d~~~id~~~~--------Gt~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
|-|+-+|| ..+ ....-++.+|..||+.|++||.+-|=+
T Consensus 174 ~~d~IKiD-~~~i~~i~~~~~~~~~~~~lv~~a~~~~~~viAeGVEt 219 (255)
T PRK11596 174 RYDYIKVA-RELFIMLRQSEEGRNLFSQLLHLMNRYCRGVIVEGVET 219 (255)
T ss_pred CCCEEEEC-HHHHHhhhcChhhHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 55666676 422 224468899999999999999997754
No 490
>PRK13938 phosphoheptose isomerase; Provisional
Probab=21.39 E-value=1e+02 Score=26.28 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEE
Q 018833 12 KYGSQADLKSLIQAFRQKGIKCLA 35 (350)
Q Consensus 12 ~~Gt~~d~~~lv~~aH~~Gi~Vil 35 (350)
.=|.-.+..+.++.|+++|++||.
T Consensus 122 ~SG~t~~vi~a~~~Ak~~G~~vI~ 145 (196)
T PRK13938 122 TSGNSMSVLRAAKTARELGVTVVA 145 (196)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEE
Confidence 447778899999999999999985
No 491
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=21.33 E-value=4.6e+02 Score=24.03 Aligned_cols=21 Identities=24% Similarity=0.748 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhcCCCeEEec
Q 018833 107 KELSDWMNWLKTEIGFDGWRFD 128 (350)
Q Consensus 107 ~~l~~~~~~w~~~~gvDGfR~D 128 (350)
+.+.+.+.+..+ .|||++.+.
T Consensus 178 ~ei~~~~~~~~~-lGv~~i~i~ 198 (318)
T TIGR03470 178 EEVAEFFDYLTD-LGVDGMTIS 198 (318)
T ss_pred HHHHHHHHHHHH-cCCCEEEEe
Confidence 466666676655 899988875
No 492
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=21.06 E-value=2.9e+02 Score=24.83 Aligned_cols=54 Identities=13% Similarity=-0.106 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcCCCcEEEeecCCC
Q 018833 102 NPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSL 158 (350)
Q Consensus 102 n~~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~p~~~~~E~~~~~ 158 (350)
-...++++.+-+.-|+++||=|=-=+=.-..+...+++.+++. -.++.|...++
T Consensus 180 v~gaqqfIlE~vp~~i~kYGkdtaff~TN~a~~epllk~~~~~---g~i~~e~~~ps 233 (275)
T PF12683_consen 180 VAGAQQFILEDVPKWIKKYGKDTAFFCTNDAMTEPLLKQALEY---GGIFPEADLPS 233 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHH-S--EEEESSHHHHHHHHHHHHHH-----BB---SS--
T ss_pred cHHHHHHHHHHHHHHHHHhCCceeEEecCccccHHHHHHHHHc---CCEEEeCCCCC
Confidence 3678999999999999999987644433334455566666543 23556665543
No 493
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=20.76 E-value=1.1e+02 Score=28.68 Aligned_cols=36 Identities=14% Similarity=0.345 Sum_probs=28.8
Q ss_pred CCCCCCCCC-HHHHHHHHHHHHHCCCEEEEEEeccCCCC
Q 018833 7 DLDASKYGS-QADLKSLIQAFRQKGIKCLADMVINHRTA 44 (350)
Q Consensus 7 ~id~~~~Gt-~~d~~~lv~~aH~~Gi~VilD~V~NH~s~ 44 (350)
.|+|..+|+ .+.++++|++|.++|+-|=+= .||-|-
T Consensus 106 RINPGNig~~~~~v~~vv~~ak~~~ipIRIG--vN~GSL 142 (360)
T PRK00366 106 RINPGNIGKRDERVREVVEAAKDYGIPIRIG--VNAGSL 142 (360)
T ss_pred EECCCCCCchHHHHHHHHHHHHHCCCCEEEe--cCCccC
Confidence 355889999 999999999999999876543 476653
No 494
>PTZ00377 alanine aminotransferase; Provisional
Probab=20.76 E-value=92 Score=30.47 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccCCC
Q 018833 15 SQADLKSLIQAFRQKGIKCLADMVINHRT 43 (350)
Q Consensus 15 t~~d~~~lv~~aH~~Gi~VilD~V~NH~s 43 (350)
+.++++++++.|+++|+-||.|=++.+..
T Consensus 236 s~e~~~~i~~~a~~~~~~iI~De~Y~~l~ 264 (481)
T PTZ00377 236 TRDVMEEIIKFCYEKGIVLMADEVYQENI 264 (481)
T ss_pred CHHHHHHHHHHHHHCCCEEEEehhhHhhc
Confidence 37899999999999999999999998764
No 495
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=20.74 E-value=1.1e+02 Score=29.87 Aligned_cols=27 Identities=19% Similarity=0.357 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHR 42 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~ 42 (350)
.+++++|++.|+++|+-||.|=++...
T Consensus 210 ~e~l~~ll~~a~~~~~~iI~DE~Y~~~ 236 (468)
T PLN02450 210 RTELNLLVDFITAKNIHLISDEIYSGT 236 (468)
T ss_pred HHHHHHHHHHHHHCCcEEEEEcccccc
Confidence 789999999999999999999988754
No 496
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=20.69 E-value=1.1e+02 Score=27.02 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEe
Q 018833 16 QADLKSLIQAFRQKGIKCLADMV 38 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V 38 (350)
.++..+||+.++++|++|+-.+=
T Consensus 99 ~~~~~rlI~~~~~~g~~v~~EvG 121 (237)
T TIGR03849 99 LEERCNLIERAKDNGFMVLSEVG 121 (237)
T ss_pred HHHHHHHHHHHHhCCCeEecccc
Confidence 57888999999999999986643
No 497
>PF11658 DUF3260: Protein of unknown function (DUF3260); InterPro: IPR017744 This protein was identified by the partial phylogenetic profiling algorithm [] as part of the system for cellulose biosynthesis in bacteria, and in fact is found in cellulose biosynthesis gene regions. The protein was designated YhjU in Salmonella enteritidis, where disruption of its gene disrupts cellulose biosynthesis and biofilm formation [].
Probab=20.59 E-value=1.3e+02 Score=29.54 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccCCCCC
Q 018833 16 QADLKSLIQAFRQKGIKCLADMVINHRTAE 45 (350)
Q Consensus 16 ~~d~~~lv~~aH~~Gi~VilD~V~NH~s~~ 45 (350)
.+|+.+|++++.+.|=+||+=+||.|-+.-
T Consensus 382 lddl~~F~~~Le~SgR~v~vv~VPEHGAAl 411 (518)
T PF11658_consen 382 LDDLDRFFDELEKSGRKVMVVVVPEHGAAL 411 (518)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEecCccccc
Confidence 589999999999999999999999997753
No 498
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=20.59 E-value=1.1e+02 Score=29.60 Aligned_cols=32 Identities=16% Similarity=0.326 Sum_probs=27.4
Q ss_pred CCCCC---HHHHHHHHHHHHHCCCEEEEEEeccCC
Q 018833 11 SKYGS---QADLKSLIQAFRQKGIKCLADMVINHR 42 (350)
Q Consensus 11 ~~~Gt---~~d~~~lv~~aH~~Gi~VilD~V~NH~ 42 (350)
...|. .+++++|++-|+++|+-||.|=++-..
T Consensus 211 NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~ 245 (447)
T PLN02607 211 NPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGS 245 (447)
T ss_pred CCcCcccCHHHHHHHHHHHHHCCCEEEEecccccc
Confidence 34555 789999999999999999999998754
No 499
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=20.58 E-value=90 Score=29.45 Aligned_cols=30 Identities=10% Similarity=0.185 Sum_probs=24.2
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Q 018833 11 SKYGSQADLKSLIQAFRQKGIKCLADMVIN 40 (350)
Q Consensus 11 ~~~Gt~~d~~~lv~~aH~~Gi~VilD~V~N 40 (350)
..=+..-|+.++.+-||++|+-+|+|-.+-
T Consensus 158 NP~~~v~Die~ia~iAh~~gvpliVDNT~a 187 (426)
T COG2873 158 NPGLDVLDIEAIAEIAHRHGVPLIVDNTFA 187 (426)
T ss_pred CCCccccCHHHHHHHHHHcCCcEEEecCCC
Confidence 334556789999999999999999996543
No 500
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=20.42 E-value=96 Score=28.87 Aligned_cols=27 Identities=15% Similarity=0.309 Sum_probs=23.6
Q ss_pred CCCCC---HHHHHHHHHHHHHCCCEEEEEE
Q 018833 11 SKYGS---QADLKSLIQAFRQKGIKCLADM 37 (350)
Q Consensus 11 ~~~Gt---~~d~~~lv~~aH~~Gi~VilD~ 37 (350)
...|| +++|++..+-||++||.|-||-
T Consensus 141 te~GtVy~l~el~~i~~~~k~~~l~LHmDG 170 (342)
T COG2008 141 TEGGTVYPLDELEAISAVCKEHGLPLHMDG 170 (342)
T ss_pred CCCceecCHHHHHHHHHHHHHhCCceeech
Confidence 34565 8999999999999999999996
Done!