BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018835
(350 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/159 (52%), Positives = 105/159 (66%), Gaps = 3/159 (1%)
Query: 5 SLPPGFRFHPTDEELVGYYLKRKVDGLQIELEVIPVVELYKFDPWELPEKSFLPKRDMEW 64
SLPPGFRF+PTDEEL+ YL RK G L++I ++LYKFDPW LP K+ ++ EW
Sbjct: 16 SLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEK--EW 73
Query: 65 FFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVCQSTSATGYRKTLVFYRGRAPLGDR 124
+FF PRDRKYPNGSR NR +GYWKATG D K++ G +K LVFY G+AP G +
Sbjct: 74 YFFSPRDRKYPNGSRPNRVAGSGYWKATGTD-KIISTEGQRVGIKKALVFYIGKAPKGTK 132
Query: 125 TDWVMHEYRLCDDVSHGSPNFWGAFALCRVVKKNENAQK 163
T+W+MHEYRL + + LCR+ KK +AQK
Sbjct: 133 TNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQK 171
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/159 (52%), Positives = 105/159 (66%), Gaps = 3/159 (1%)
Query: 5 SLPPGFRFHPTDEELVGYYLKRKVDGLQIELEVIPVVELYKFDPWELPEKSFLPKRDMEW 64
SLPPGFRF+PTDEEL+ YL RK G L++I ++LYKFDPW LP K+ ++ EW
Sbjct: 19 SLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEK--EW 76
Query: 65 FFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVCQSTSATGYRKTLVFYRGRAPLGDR 124
+FF PRDRKYPNGSR NR +GYWKATG D K++ G +K LVFY G+AP G +
Sbjct: 77 YFFSPRDRKYPNGSRPNRVAGSGYWKATGTD-KIISTEGQRVGIKKALVFYIGKAPKGTK 135
Query: 125 TDWVMHEYRLCDDVSHGSPNFWGAFALCRVVKKNENAQK 163
T+W+MHEYRL + + LCR+ KK +AQK
Sbjct: 136 TNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQK 174
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 78/130 (60%), Positives = 97/130 (74%), Gaps = 3/130 (2%)
Query: 5 SLPPGFRFHPTDEELVGYYLKRKVDGLQIELEVIPVVELYKFDPWELPEKSFLPKRDMEW 64
+LPPGFRFHPTD+ELV +YL RK G ++ + +I V+LYKFDPW+LPE++ R EW
Sbjct: 14 NLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAR--EW 71
Query: 65 FFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVCQSTSATGYRKTLVFYRGRAPLGDR 124
+FF PRDRKYPNGSR NRA GYWKATG D+ V + + G +K LVFY G+AP G +
Sbjct: 72 YFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRT-LGIKKALVFYAGKAPRGVK 130
Query: 125 TDWVMHEYRL 134
TDW+MHEYRL
Sbjct: 131 TDWIMHEYRL 140
>pdb|4GFH|F Chain F, Topoisomerase Ii-Dna-Amppnp Complex
Length = 1099
Score = 28.5 bits (62), Expect = 5.4, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 274 EFQNSVTPCHPFEHKDFSPGSSYSNFNGEIELAEDLSRFG 313
+++N+++ CHP + + G SY+ ++ DL+RFG
Sbjct: 166 KWENNMSICHPPKITSYKKGPSYT----KVTFKPDLTRFG 201
>pdb|4GFH|A Chain A, Topoisomerase Ii-Dna-Amppnp Complex
Length = 1103
Score = 28.5 bits (62), Expect = 5.5, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 274 EFQNSVTPCHPFEHKDFSPGSSYSNFNGEIELAEDLSRFG 313
+++N+++ CHP + + G SY+ ++ DL+RFG
Sbjct: 166 KWENNMSICHPPKITSYKKGPSYT----KVTFKPDLTRFG 201
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,035,384
Number of Sequences: 62578
Number of extensions: 516589
Number of successful extensions: 621
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 611
Number of HSP's gapped (non-prelim): 12
length of query: 350
length of database: 14,973,337
effective HSP length: 100
effective length of query: 250
effective length of database: 8,715,537
effective search space: 2178884250
effective search space used: 2178884250
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)