Query 018835
Match_columns 350
No_of_seqs 168 out of 968
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 06:47:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018835.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018835hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 1.1E-53 3.8E-58 383.6 14.8 153 4-159 13-170 (174)
2 1ut7_A No apical meristem prot 100.0 1.3E-53 4.4E-58 382.3 12.4 155 4-161 15-169 (171)
3 1ldd_A APC2WHB, anaphase promo 20.5 54 0.0018 25.0 2.3 28 6-34 36-64 (74)
4 1cmb_A Met APO-repressor; DNA- 11.6 2.4E+02 0.0082 22.4 3.9 39 13-55 50-88 (104)
5 4dox_A Coat protein; all helix 11.1 95 0.0032 28.5 1.7 21 7-27 156-176 (226)
6 2c4b_A Barnase mcoeeti fusion; 9.2 1.9E+02 0.0066 24.7 2.8 37 15-54 4-44 (143)
7 3nr5_A MAF1, repressor of RNA 9.0 1.1E+02 0.0036 26.8 1.2 13 37-49 118-130 (164)
8 1h9i_I EETI-II, trypsin inhibi 8.9 83 0.0028 20.7 0.3 11 309-319 22-32 (36)
9 2jv2_A Putative uncharacterize 8.4 1.7E+02 0.0057 22.5 2.0 29 16-45 26-54 (83)
10 3dz1_A Dihydrodipicolinate syn 7.9 1.6E+02 0.0053 27.5 1.9 19 5-25 108-126 (313)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=1.1e-53 Score=383.64 Aligned_cols=153 Identities=54% Similarity=1.037 Sum_probs=132.0
Q ss_pred CCCCCCceeCCChHHHHHHHHHHHHcCCCCCCCceeeccCCCCCCCCCCcccCCCCCCCceEEecccCCCCCCCCccccc
Q 018835 4 ASLPPGFRFHPTDEELVGYYLKRKVDGLQIELEVIPVVELYKFDPWELPEKSFLPKRDMEWFFFCPRDRKYPNGSRTNRA 83 (350)
Q Consensus 4 ~~LPpGfRF~PTDEELV~~YL~~Ki~G~pl~~~~I~evDVY~~ePweLp~~~~~~~~d~ewYFFt~r~rK~~nG~R~~Ra 83 (350)
..|||||||+|||||||.|||++|+.|.+++.++|+++|||++|||+||+.+.. ++.+||||+++++||++|.|++|+
T Consensus 13 ~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~--g~~ewYFFs~r~~ky~~g~R~nR~ 90 (174)
T 3ulx_A 13 LNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALF--GAREWYFFTPRDRKYPNGSRPNRA 90 (174)
T ss_dssp TTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSS--CSSEEEEEEECCC-----CCSCEE
T ss_pred cCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhcc--CCceEEEEeccccccCCCCCceee
Confidence 479999999999999999999999999999999999999999999999988643 468999999999999999999999
Q ss_pred cccceeeeCCCcceEecCCcceEEEEEEEEEeeCCCCCCCCcCeEEEEEEeCCCCCCC-----CCCCCCceEEEEEEecC
Q 018835 84 TKAGYWKATGKDRKVVCQSTSATGYRKTLVFYRGRAPLGDRTDWVMHEYRLCDDVSHG-----SPNFWGAFALCRVVKKN 158 (350)
Q Consensus 84 t~gG~WK~tG~~k~I~~~~g~vIG~KKtL~FY~g~~p~g~kT~WvMhEY~L~~~~~~~-----~~~~~~~~VLCRVykK~ 158 (350)
+++|+||++|+++.|..+ +.+||+||+|+||.|+++++.||+|+||||+|.+..... .....++|||||||+|.
T Consensus 91 t~~G~WkatG~dk~I~~~-g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K~ 169 (174)
T 3ulx_A 91 AGNGYWKATGADKPVAPR-GRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKK 169 (174)
T ss_dssp ETTEEEEECSCCEEECCS-SSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEESC
T ss_pred cCCceEccCCCCcEEeeC-CcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEEcC
Confidence 999999999999999876 569999999999999999999999999999999854321 01236799999999986
Q ss_pred C
Q 018835 159 E 159 (350)
Q Consensus 159 ~ 159 (350)
.
T Consensus 170 ~ 170 (174)
T 3ulx_A 170 N 170 (174)
T ss_dssp C
T ss_pred C
Confidence 5
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=1.3e-53 Score=382.25 Aligned_cols=155 Identities=52% Similarity=1.011 Sum_probs=129.0
Q ss_pred CCCCCCceeCCChHHHHHHHHHHHHcCCCCCCCceeeccCCCCCCCCCCcccCCCCCCCceEEecccCCCCCCCCccccc
Q 018835 4 ASLPPGFRFHPTDEELVGYYLKRKVDGLQIELEVIPVVELYKFDPWELPEKSFLPKRDMEWFFFCPRDRKYPNGSRTNRA 83 (350)
Q Consensus 4 ~~LPpGfRF~PTDEELV~~YL~~Ki~G~pl~~~~I~evDVY~~ePweLp~~~~~~~~d~ewYFFt~r~rK~~nG~R~~Ra 83 (350)
..|||||||+|||||||.|||++|+.|.+++.++|+++|||++|||+||+.+. .++.+||||+++++|+++|.|++|+
T Consensus 15 ~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~--~g~~ewyFFs~r~~k~~~g~R~~R~ 92 (171)
T 1ut7_A 15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKAL--FGEKEWYFFSPRDRKYPNGSRPNRV 92 (171)
T ss_dssp SCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSS--SCSSEEEEEEECCC-------CCEE
T ss_pred cCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhh--cCCccEEEEeccccccCCCCccccc
Confidence 48999999999999999999999999999999999999999999999999863 3578999999999999999999999
Q ss_pred cccceeeeCCCcceEecCCcceEEEEEEEEEeeCCCCCCCCcCeEEEEEEeCCCCCCCCCCCCCceEEEEEEecCCCC
Q 018835 84 TKAGYWKATGKDRKVVCQSTSATGYRKTLVFYRGRAPLGDRTDWVMHEYRLCDDVSHGSPNFWGAFALCRVVKKNENA 161 (350)
Q Consensus 84 t~gG~WK~tG~~k~I~~~~g~vIG~KKtL~FY~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~VLCRVykK~~~~ 161 (350)
|++|+||++|+++.|..++ .+||+||+|+||.|+++++.||+|+||||+|............++|||||||+|....
T Consensus 93 t~~G~Wk~tG~~k~I~~~~-~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~~ 169 (171)
T 1ut7_A 93 AGSGYWKATGTDKIISTEG-QRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSA 169 (171)
T ss_dssp ETTEEEEEEEEEEEEEETT-EEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC---
T ss_pred CCCCEEeccCCCceEEecC-cEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCCC
Confidence 9999999999999999865 6999999999999999999999999999999976422222346899999999997653
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=20.54 E-value=54 Score=24.99 Aligned_cols=28 Identities=25% Similarity=0.512 Sum_probs=23.0
Q ss_pred CCCCceeCC-ChHHHHHHHHHHHHcCCCCC
Q 018835 6 LPPGFRFHP-TDEELVGYYLKRKVDGLQIE 34 (350)
Q Consensus 6 LPpGfRF~P-TDEELV~~YL~~Ki~G~pl~ 34 (350)
.|.|+.|.. |++||-. ||.+|+....+.
T Consensus 36 ~~~~~~~~~it~~eL~~-fL~~~v~e~kL~ 64 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEG-YLNTLADEGRLK 64 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTSEE
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHhCCeEE
Confidence 367899998 8899888 799999977654
No 4
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=11.56 E-value=2.4e+02 Score=22.44 Aligned_cols=39 Identities=26% Similarity=0.272 Sum_probs=31.7
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCCceeeccCCCCCCCCCCccc
Q 018835 13 HPTDEELVGYYLKRKVDGLQIELEVIPVVELYKFDPWELPEKS 55 (350)
Q Consensus 13 ~PTDEELV~~YL~~Ki~G~pl~~~~I~evDVY~~ePweLp~~~ 55 (350)
|-|..||+..-...-..|+|+|. +.|+-+..|.++|+..
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~----D~Dl~Kd~~d~iP~~a 88 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC----GGGGBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----chhhhhcCCccchHHH
Confidence 56788888877778889999986 4688899999999653
No 5
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=11.14 E-value=95 Score=28.49 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=15.8
Q ss_pred CCCceeCCChHHHHHHHHHHH
Q 018835 7 PPGFRFHPTDEELVGYYLKRK 27 (350)
Q Consensus 7 PpGfRF~PTDEELV~~YL~~K 27 (350)
+-|..+.||++|+|.|=..++
T Consensus 156 ~~GLiR~PT~~E~iA~~t~K~ 176 (226)
T 4dox_A 156 PSGLTRSPTQEERIANATNKQ 176 (226)
T ss_dssp TTCCSSCCCHHHHHHHHTC--
T ss_pred CCCCCCCCCHHHHHHHHHHHH
Confidence 348999999999999844443
No 6
>2c4b_A Barnase mcoeeti fusion; squash inhibitor, hybrid microprotein, fusion protein, ribonuclease, endonuclease, hydrolase, nuclease; HET: 2PE MES; 1.3A {Bacillus amyloliquefaciens} SCOP: d.1.1.2 g.3.2.1 PDB: 1b3s_A 2kf3_A 2kf4_A 2kf5_A 2kf6_A 1a2p_A 1b27_A 1b2x_A 1bgs_A 1bni_A 1bnj_A 1bnr_A 1brn_L* 1brs_A 1fw7_A 1x1u_A 1x1w_A 1x1x_A 1yvs_A 3kch_A ...
Probab=9.18 E-value=1.9e+02 Score=24.70 Aligned_cols=37 Identities=14% Similarity=0.080 Sum_probs=21.6
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCceee--ccCCCCCCC--CCCcc
Q 018835 15 TDEELVGYYLKRKVDGLQIELEVIPV--VELYKFDPW--ELPEK 54 (350)
Q Consensus 15 TDEELV~~YL~~Ki~G~pl~~~~I~e--vDVY~~ePw--eLp~~ 54 (350)
|+.+-|..||.. -..||..+|.. ++--+.+|- .|.+.
T Consensus 4 t~~~~V~~yl~~---~~~LP~~yiTK~eA~~~GW~p~kgnL~~v 44 (143)
T 2c4b_A 4 NTFDGVADYLQT---YHKLPDNYITKSEAQALGWVASKGNLADV 44 (143)
T ss_dssp CSHHHHHHHHHH---HSSCCTTEECHHHHHHTTCCGGGTCHHHH
T ss_pred cchhHHHHHHHH---hCcCCcccccHHHHHHcCCCCCcCcHhhc
Confidence 455666678877 34466665554 455667774 34443
No 7
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=9.05 E-value=1.1e+02 Score=26.80 Aligned_cols=13 Identities=15% Similarity=0.624 Sum_probs=10.7
Q ss_pred ceeeccCCCCCCC
Q 018835 37 VIPVVELYKFDPW 49 (350)
Q Consensus 37 ~I~evDVY~~ePw 49 (350)
.+.++|||.+.|.
T Consensus 118 ~l~dC~IYsY~Pd 130 (164)
T 3nr5_A 118 CLAECDIYSYNPD 130 (164)
T ss_dssp CGGGCEEEEECCC
T ss_pred CccCCeEEEEcCC
Confidence 3667899999998
No 8
>1h9i_I EETI-II, trypsin inhibitor II; hydrolase/inhibitor, complex (serine protease/inhibitor), squash inhibitor, cystine knot; 1.9A {Ecballium elaterium} SCOP: g.3.2.1
Probab=8.91 E-value=83 Score=20.72 Aligned_cols=11 Identities=27% Similarity=0.208 Sum_probs=7.2
Q ss_pred ccccccCCcCC
Q 018835 309 LSRFGCMSPYS 319 (350)
Q Consensus 309 ~~~~~~~~~~~ 319 (350)
|+++||.||--
T Consensus 22 l~~~~~~~~~~ 32 (36)
T 1h9i_I 22 TNNKFCGSPHH 32 (36)
T ss_dssp CTTSBEECC--
T ss_pred ecCCccCCCcc
Confidence 67788888853
No 9
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=8.40 E-value=1.7e+02 Score=22.50 Aligned_cols=29 Identities=7% Similarity=0.123 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHcCCCCCCCceeeccCCC
Q 018835 16 DEELVGYYLKRKVDGLQIELEVIPVVELYK 45 (350)
Q Consensus 16 DEELV~~YL~~Ki~G~pl~~~~I~evDVY~ 45 (350)
+.++ ..||++++.|+|+...-+..+++++
T Consensus 26 ~~~~-~~~lk~~L~grPV~~GD~I~i~~~G 54 (83)
T 2jv2_A 26 PPDF-VDVIRIKLQGKTVRTGDVIGISILG 54 (83)
T ss_dssp CHHH-HHHHHHHHTTSEECTTCEEEEEETT
T ss_pred CccH-HHHHHHHHCCCCccCCCEEEEeeCC
Confidence 3555 4589999999998755444466543
No 10
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=7.92 E-value=1.6e+02 Score=27.52 Aligned_cols=19 Identities=32% Similarity=0.552 Sum_probs=14.3
Q ss_pred CCCCCceeCCChHHHHHHHHH
Q 018835 5 SLPPGFRFHPTDEELVGYYLK 25 (350)
Q Consensus 5 ~LPpGfRF~PTDEELV~~YL~ 25 (350)
-+||- |.||+++|+.||-.
T Consensus 108 v~~P~--~~~s~~~l~~~f~~ 126 (313)
T 3dz1_A 108 IAPPP--SLRTDEQITTYFRQ 126 (313)
T ss_dssp ECCCT--TCCSHHHHHHHHHH
T ss_pred ECCCC--CCCCHHHHHHHHHH
Confidence 36674 56999999998654
Done!