BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018839
(350 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DO8|A Chain A, The Crystal Structure Of The Protein With Unknown Function
From Archaeoglobus Fulgidus
pdb|3DO8|B Chain B, The Crystal Structure Of The Protein With Unknown Function
From Archaeoglobus Fulgidus
Length = 148
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 215 KIILSGSFNPLHDGHLKLLEVATRICGN 242
K+ L G+F PLH+GH KL++VA ++ G
Sbjct: 2 KVALGGTFEPLHEGHKKLIDVAIKLGGR 29
>pdb|1COZ|A Chain A, Ctp:glycerol-3-Phosphate Cytidylyltransferase From
Bacillus Subtilis
pdb|1COZ|B Chain B, Ctp:glycerol-3-Phosphate Cytidylyltransferase From
Bacillus Subtilis
pdb|1N1D|A Chain A, Glycerol-3-phosphate Cytidylyltransferase Complexed With
Cdp-glycerol
pdb|1N1D|B Chain B, Glycerol-3-phosphate Cytidylyltransferase Complexed With
Cdp-glycerol
pdb|1N1D|C Chain C, Glycerol-3-phosphate Cytidylyltransferase Complexed With
Cdp-glycerol
pdb|1N1D|D Chain D, Glycerol-3-phosphate Cytidylyltransferase Complexed With
Cdp-glycerol
Length = 129
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 214 RKIILSGSFNPLHDGHLKLLEVATRI 239
+K+I G+F+ LH GH+KLLE A ++
Sbjct: 2 KKVITYGTFDLLHWGHIKLLERAKQL 27
>pdb|3IUB|A Chain A, Crystal Structure Of Pantothenate Synthetase From
Mycobacterium Tuberculosis In Complex With
5-Methoxy-N-(5-
Methylpyridin-2-Ylsulfonyl)-1h-Indole-2-Carboxamide
pdb|3IUB|B Chain B, Crystal Structure Of Pantothenate Synthetase From
Mycobacterium Tuberculosis In Complex With
5-Methoxy-N-(5-
Methylpyridin-2-Ylsulfonyl)-1h-Indole-2-Carboxamide
pdb|3IUE|A Chain A, Crystal Structure Of Pantothenate Synthetase In Complex
With 2-(5-
Methoxy-2-(5-Methylpyridin-2-Ylsulfonylcarbamoyl)-1h-
Indol-1-Yl) Acetic Acid
pdb|3IUE|B Chain B, Crystal Structure Of Pantothenate Synthetase In Complex
With 2-(5-
Methoxy-2-(5-Methylpyridin-2-Ylsulfonylcarbamoyl)-1h-
Indol-1-Yl) Acetic Acid
pdb|3IVC|A Chain A, Crystal Structure Of Pantothenate Synthetase In Complex
With 2-(2-
((Benzofuran-2-Ylmethoxy)carbonyl)-5-Methoxy-1h-Indol-1-
Yl)acetic Acid
pdb|3IVC|B Chain B, Crystal Structure Of Pantothenate Synthetase In Complex
With 2-(2-
((Benzofuran-2-Ylmethoxy)carbonyl)-5-Methoxy-1h-Indol-1-
Yl)acetic Acid
pdb|3IVG|A Chain A, Crystal Structure Of Pantothenate Synthetase In Complex
With 2-(2-
((Benzofuran-2-Sulfonamido)methyl)-5-Methoxy-1h-Indol-1-
Yl)acetic Acid
pdb|3IVG|B Chain B, Crystal Structure Of Pantothenate Synthetase In Complex
With 2-(2-
((Benzofuran-2-Sulfonamido)methyl)-5-Methoxy-1h-Indol-1-
Yl)acetic Acid
pdb|3IVX|A Chain A, Crystal Structure Of Pantothenate Synthetase In Complex
With 2-(2-
(Benzofuran-2-Ylsulfonylcarbamoyl)-5-Methoxy-1h-Indol-1-
Yl)acetic Acid
pdb|3IVX|B Chain B, Crystal Structure Of Pantothenate Synthetase In Complex
With 2-(2-
(Benzofuran-2-Ylsulfonylcarbamoyl)-5-Methoxy-1h-Indol-1-
Yl)acetic Acid
pdb|4DDH|A Chain A, Pantothenate Synthetase In Complex With
6-methoxy-1-benzofuran-3-yl Acetic Acid
pdb|4DDH|B Chain B, Pantothenate Synthetase In Complex With
6-methoxy-1-benzofuran-3-yl Acetic Acid
pdb|4DDK|A Chain A, Pantothenate Synthetase In Complex With
1,3-benzodioxole-5-carboxylic Acid
pdb|4DDK|B Chain B, Pantothenate Synthetase In Complex With
1,3-benzodioxole-5-carboxylic Acid
pdb|4DDM|A Chain A, Pantothenate Synthetase In Complex With
2,1,3-benzothiadiazole-5- Carboxylic Acid
pdb|4DDM|B Chain B, Pantothenate Synthetase In Complex With
2,1,3-benzothiadiazole-5- Carboxylic Acid
Length = 301
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 214 RKIILSGSFNPLHDGHLKLLEVATRICGN 242
R+++L + LH+GHL L+ A R+ G+
Sbjct: 32 RRVMLVPTMGALHEGHLALVRAAKRVPGS 60
>pdb|3COV|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.5 Ang Resolution- Apo Form
pdb|3COV|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.5 Ang Resolution- Apo Form
pdb|3COW|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.8 Ang Resolution- In
Complex With Sulphonamide Inhibitor 2
pdb|3COW|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.8 Ang Resolution- In
Complex With Sulphonamide Inhibitor 2
pdb|3COY|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 2.05 Ang Resolution- In
Complex With Sulphonamide Inhibitor 3
pdb|3COY|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 2.05 Ang Resolution- In
Complex With Sulphonamide Inhibitor 3
pdb|3COZ|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 2.0 Ang Resolution- In
Complex With Sulphonamide Inhibitor 4
pdb|3COZ|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 2.0 Ang Resolution- In
Complex With Sulphonamide Inhibitor 4
pdb|3IMC|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.6 Ang Resolution In Complex
With Fragment Compound 5- Methoxyindole, Sulfate And
Glycerol
pdb|3IMC|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.6 Ang Resolution In Complex
With Fragment Compound 5- Methoxyindole, Sulfate And
Glycerol
pdb|3IME|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 2.40 Ang Resolution In
Complex With Fragment Compound 1-Benzofuran-2-Carboxylic
Acid
pdb|3IME|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 2.40 Ang Resolution In
Complex With Fragment Compound 1-Benzofuran-2-Carboxylic
Acid
pdb|3IMG|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.8 Ang Resolution In A
Ternary Complex With Fragment Compounds 5-Methoxyindole
And 1-Benzofuran-2-Carboxylic Acid
pdb|3IMG|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.8 Ang Resolution In A
Ternary Complex With Fragment Compounds 5-Methoxyindole
And 1-Benzofuran-2-Carboxylic Acid
pdb|3IOB|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.80 Ang Resolution In
Complex With 5'-deoxy-5'- Thioadenosine
pdb|3IOB|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.80 Ang Resolution In
Complex With 5'-deoxy-5'- Thioadenosine
pdb|3IOC|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 2.50 Ang Resolution In
Complex With 5'-Deoxy-5'- (Benzyldisulfanyl)-Adenosine
pdb|3IOC|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 2.50 Ang Resolution In
Complex With 5'-Deoxy-5'- (Benzyldisulfanyl)-Adenosine
pdb|3IOD|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.75 Ang Resolution In
Complex With 5'-Deoxy-5'-((3-
Nitrobenzyl)disulfanyl)-Adenosine
pdb|3IOD|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.75 Ang Resolution In
Complex With 5'-Deoxy-5'-((3-
Nitrobenzyl)disulfanyl)-Adenosine
pdb|3IOE|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.95 Ang Resolution In
Complex With 5'-Deoxy-5'-((R)-3,
4-Dihydroxybutylthio)-Adenosine
pdb|3IOE|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.95 Ang Resolution In
Complex With 5'-Deoxy-5'-((R)-3,
4-Dihydroxybutylthio)-Adenosine
Length = 301
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 214 RKIILSGSFNPLHDGHLKLLEVATRICGN 242
R+++L + LH+GHL L+ A R+ G+
Sbjct: 33 RRVMLVPTMGALHEGHLALVRAAKRVPGS 61
>pdb|1MOP|A Chain A, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis
pdb|1MOP|B Chain B, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis
pdb|1N2B|A Chain A, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis In Complex With Ampcpp And Pantoate, Higher
Occupancy Of Pantoate And Lower Occupancy Of Ampcpp In
Subunit A
pdb|1N2B|B Chain B, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis In Complex With Ampcpp And Pantoate, Higher
Occupancy Of Pantoate And Lower Occupancy Of Ampcpp In
Subunit A
pdb|1N2E|A Chain A, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis In Complex With Ampcpp And Pantoate
pdb|1N2E|B Chain B, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis In Complex With Ampcpp And Pantoate
pdb|1N2G|A Chain A, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis In Complex With Ampcpp
pdb|1N2G|B Chain B, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis In Complex With Ampcpp
pdb|1N2H|A Chain A, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis In Complex With A Reaction Intermediate,
Pantoyl Adenylate
pdb|1N2H|B Chain B, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis In Complex With A Reaction Intermediate,
Pantoyl Adenylate
pdb|1N2I|A Chain A, Crystal Structure Of Pantothenate Synthetase From M.
Tuberculosis In Complex With A Reaction Intermediate,
Pantoyl Adenylate, Different Occupancies Of Pantoyl
Adenylate
pdb|1N2I|B Chain B, Crystal Structure Of Pantothenate Synthetase From M.
Tuberculosis In Complex With A Reaction Intermediate,
Pantoyl Adenylate, Different Occupancies Of Pantoyl
Adenylate
pdb|1N2J|A Chain A, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis In Complex With Pantoate
pdb|1N2J|B Chain B, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis In Complex With Pantoate
pdb|1N2O|A Chain A, Crystal Structure Of Pantothenate Synthetase From M.
Tuberculosis, Low Occupancy Of Beta-Alanine At The
Pantoate Binding Sites
pdb|1N2O|B Chain B, Crystal Structure Of Pantothenate Synthetase From M.
Tuberculosis, Low Occupancy Of Beta-Alanine At The
Pantoate Binding Sites
pdb|2A7X|A Chain A, Crystal Structure Of A Pantothenate Synthetase Complexed
With Amp
pdb|2A84|A Chain A, Crystal Structure Of A Pantothenate Synthetase Complexed
With Atp
pdb|2A86|A Chain A, Crystal Structure Of A Pantothenate Synthetase Complexed
With Amp And Beta-Alanine
pdb|2A86|B Chain B, Crystal Structure Of A Pantothenate Synthetase Complexed
With Amp And Beta-Alanine
pdb|2A88|A Chain A, Crystal Structure Of A Pantothenate Synthetase, Apo Enzyme
In C2 Space Group
pdb|3ISJ|A Chain A, Crystal Structure Of Pantothenate Synthetase From
Mycobacterium Tuberculosis In Complex With
5-Methoxy-N-(Methylsulfonyl)-1h-Indole- 2-Carboxamide
pdb|3ISJ|B Chain B, Crystal Structure Of Pantothenate Synthetase From
Mycobacterium Tuberculosis In Complex With
5-Methoxy-N-(Methylsulfonyl)-1h-Indole- 2-Carboxamide
pdb|3LE8|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.70 Angstrom Resolution In
Complex With 2-
(2-((Benzofuran-2-Carboxamido)methyl)-5-Methoxy-1h-
Indol-1- Yl)acetic Acid
pdb|3LE8|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.70 Angstrom Resolution In
Complex With 2-
(2-((Benzofuran-2-Carboxamido)methyl)-5-Methoxy-1h-
Indol-1- Yl)acetic Acid
Length = 300
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 214 RKIILSGSFNPLHDGHLKLLEVATRICGN 242
R+++L + LH+GHL L+ A R+ G+
Sbjct: 32 RRVMLVPTMGALHEGHLALVRAAKRVPGS 60
>pdb|1OD6|A Chain A, The Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Thermus Thermophilus In Complex
With 4'-Phosphopantetheine
Length = 160
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 19/24 (79%)
Query: 216 IILSGSFNPLHDGHLKLLEVATRI 239
++ GSF+PL +GHL +++ A+R+
Sbjct: 3 VVYPGSFDPLTNGHLDVIQRASRL 26
>pdb|3ND5|A Chain A, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) From Enterococcus Faecalis
pdb|3ND5|B Chain B, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) From Enterococcus Faecalis
pdb|3ND5|C Chain C, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) From Enterococcus Faecalis
pdb|3ND5|D Chain D, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) From Enterococcus Faecalis
pdb|3ND5|E Chain E, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) From Enterococcus Faecalis
pdb|3ND5|F Chain F, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) From Enterococcus Faecalis
pdb|3ND6|A Chain A, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) In Complex With Atp From
Enterococcus Faecalis
pdb|3ND6|B Chain B, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) In Complex With Atp From
Enterococcus Faecalis
pdb|3ND6|C Chain C, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) In Complex With Atp From
Enterococcus Faecalis
pdb|3ND6|D Chain D, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) In Complex With Atp From
Enterococcus Faecalis
pdb|3ND6|E Chain E, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) In Complex With Atp From
Enterococcus Faecalis
pdb|3ND6|F Chain F, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) In Complex With Atp From
Enterococcus Faecalis
pdb|3ND7|A Chain A, Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Enterococcus Faecalis In The
Ligand-Unbound State And In Complex With Atp And
Pantetheine
pdb|3ND7|B Chain B, Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Enterococcus Faecalis In The
Ligand-Unbound State And In Complex With Atp And
Pantetheine
pdb|3ND7|C Chain C, Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Enterococcus Faecalis In The
Ligand-Unbound State And In Complex With Atp And
Pantetheine
pdb|3ND7|D Chain D, Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Enterococcus Faecalis In The
Ligand-Unbound State And In Complex With Atp And
Pantetheine
pdb|3ND7|E Chain E, Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Enterococcus Faecalis In The
Ligand-Unbound State And In Complex With Atp And
Pantetheine
pdb|3ND7|F Chain F, Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Enterococcus Faecalis In The
Ligand-Unbound State And In Complex With Atp And
Pantetheine
Length = 171
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 214 RKIIL-SGSFNPLHDGHLKLLEVATRI 239
RKI L GSF+P+ +GHL L+E + ++
Sbjct: 2 RKIALFPGSFDPMTNGHLNLIERSAKL 28
>pdb|1SVC|P Chain P, Nfkb P50 Homodimer Bound To Dna
Length = 365
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 1 MTDACIRGVVEAIHASPTQAVVYIAGGASQALG 33
MT+ACIRG + P A + GG + LG
Sbjct: 157 MTEACIRGYNPGLLVHPDLAYLQAEGGGDRQLG 189
>pdb|2O61|B Chain B, Crystal Structure Of Nfkb, Irf7, Irf3 Bound To The
Interferon-B Enhancer
Length = 314
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 1 MTDACIRGVVEAIHASPTQAVVYIAGGASQALG 33
MT+ACIRG + P A + GG + LG
Sbjct: 119 MTEACIRGYNPGLLVHPDLAYLQAEGGGDRQLG 151
>pdb|1K4K|A Chain A, Crystal Structure Of E. Coli Nicotinic Acid Mononucleotide
Adenylyltransferase
pdb|1K4K|B Chain B, Crystal Structure Of E. Coli Nicotinic Acid Mononucleotide
Adenylyltransferase
pdb|1K4K|C Chain C, Crystal Structure Of E. Coli Nicotinic Acid Mononucleotide
Adenylyltransferase
pdb|1K4K|D Chain D, Crystal Structure Of E. Coli Nicotinic Acid Mononucleotide
Adenylyltransferase
pdb|1K4M|A Chain A, Crystal Structure Of E.Coli Nicotinic Acid Mononucleotide
Adenylyltransferase Complexed To Deamido-Nad
pdb|1K4M|B Chain B, Crystal Structure Of E.Coli Nicotinic Acid Mononucleotide
Adenylyltransferase Complexed To Deamido-Nad
pdb|1K4M|C Chain C, Crystal Structure Of E.Coli Nicotinic Acid Mononucleotide
Adenylyltransferase Complexed To Deamido-Nad
Length = 213
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 217 ILSGSFNPLHDGHLKLLEVATRICG 241
+ G+F+P+H GHLK +E + G
Sbjct: 7 LFGGTFDPVHYGHLKPVETLANLIG 31
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 19/139 (13%)
Query: 82 YNRALKLSRPGAPVLGVGFTGALASTHPKLGDHR------FHLSTRTSDRLWVSTVTLSK 135
Y A+ ++ GA + GV + + + P +G +++ +DR + T+TL
Sbjct: 181 YEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTLGN 240
Query: 136 GLRTREQEDKVSSHLLLKAMASACKVPATFNSELTDSETVDECEQQFSEDQELEQIINGE 195
GL+ R L A A P +N L+D + E+ S+ + E I
Sbjct: 241 GLKIRGWS-------LFPARAFVRDSPVIYNKTLSDCSS----EELLSQVENPENTI--V 287
Query: 196 ICFKVYPFLNETQVFNEER 214
IC F ++ ++ R
Sbjct: 288 ICDDNGDFSDQMRIITRAR 306
>pdb|1GZU|A Chain A, Crystal Structure Of Human Nicotinamide Mononucleotide
Adenylyltransferase In Complex With Nmn
pdb|1GZU|B Chain B, Crystal Structure Of Human Nicotinamide Mononucleotide
Adenylyltransferase In Complex With Nmn
pdb|1GZU|C Chain C, Crystal Structure Of Human Nicotinamide Mononucleotide
Adenylyltransferase In Complex With Nmn
Length = 290
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 216 IILSGSFNPLHDGHLKLLEVA 236
++ GSFNP+ + HL+L E+A
Sbjct: 22 LLACGSFNPITNXHLRLFELA 42
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,947,248
Number of Sequences: 62578
Number of extensions: 387522
Number of successful extensions: 957
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 948
Number of HSP's gapped (non-prelim): 12
length of query: 350
length of database: 14,973,337
effective HSP length: 100
effective length of query: 250
effective length of database: 8,715,537
effective search space: 2178884250
effective search space used: 2178884250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)