Query 018839
Match_columns 350
No_of_seqs 295 out of 2290
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 04:28:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018839.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018839hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1546 CinA Uncharacterized p 100.0 5.3E-32 1.1E-36 234.8 16.9 144 3-155 7-160 (162)
2 PRK03661 hypothetical protein; 100.0 3E-29 6.5E-34 220.7 17.2 144 2-156 6-158 (164)
3 PRK03657 hypothetical protein; 100.0 5E-29 1.1E-33 219.8 17.0 143 3-156 13-163 (170)
4 PF02464 CinA: Competence-dama 100.0 2.7E-28 5.9E-33 213.0 14.1 144 3-157 1-152 (154)
5 TIGR00199 cinA_cterm competenc 100.0 1.4E-27 3.1E-32 206.3 15.1 136 9-155 1-145 (146)
6 COG1057 NadD Nicotinic acid mo 99.9 1.1E-26 2.4E-31 210.0 9.7 119 212-344 2-139 (197)
7 PRK00549 competence damage-ind 99.9 1.1E-24 2.4E-29 217.9 17.2 143 3-156 257-408 (414)
8 TIGR00200 cinA_nterm competenc 99.9 2.3E-24 5.1E-29 215.0 16.6 143 3-156 258-407 (413)
9 PRK06973 nicotinic acid mononu 99.9 1E-24 2.2E-29 203.5 10.5 116 211-343 20-159 (243)
10 PRK00071 nadD nicotinic acid m 99.9 6.1E-24 1.3E-28 193.4 10.6 117 212-343 3-138 (203)
11 TIGR00482 nicotinate (nicotina 99.9 4.2E-24 9.2E-29 193.1 8.7 112 217-343 1-131 (193)
12 PRK07152 nadD putative nicotin 99.9 1.7E-23 3.6E-28 204.9 10.4 116 213-343 1-135 (342)
13 cd02165 NMNAT Nicotinamide/nic 99.9 4.6E-23 9.9E-28 186.0 9.3 113 215-343 1-132 (192)
14 PRK08887 nicotinic acid mononu 99.8 1.4E-21 3.1E-26 174.0 8.1 112 213-341 2-134 (174)
15 PLN02945 nicotinamide-nucleoti 99.8 7E-21 1.5E-25 177.4 8.5 123 208-343 17-172 (236)
16 cd09286 NMNAT_Eukarya Nicotina 99.8 3.1E-20 6.8E-25 171.8 8.7 116 215-343 2-162 (225)
17 PF01467 CTP_transf_2: Cytidyl 99.7 3.4E-18 7.3E-23 146.5 5.6 116 217-345 1-121 (157)
18 TIGR01510 coaD_prev_kdtB pante 99.5 3.2E-14 7E-19 124.4 9.6 89 215-308 1-93 (155)
19 cd02163 PPAT Phosphopantethein 99.5 6.2E-14 1.3E-18 122.4 9.9 89 215-308 1-93 (153)
20 PRK03673 hypothetical protein; 99.5 1.1E-13 2.4E-18 137.6 12.5 122 3-158 253-377 (396)
21 cd02039 cytidylyltransferase_l 99.4 8.2E-13 1.8E-17 112.0 11.1 117 215-342 1-130 (143)
22 PRK00168 coaD phosphopantethei 99.4 6.5E-13 1.4E-17 116.6 10.5 89 213-306 1-93 (159)
23 PRK13964 coaD phosphopantethei 99.4 6E-12 1.3E-16 108.2 11.1 91 213-308 1-96 (140)
24 cd02167 NMNAT_NadR Nicotinamid 99.2 1.2E-11 2.5E-16 108.7 6.8 57 215-273 1-57 (158)
25 PRK00962 hypothetical protein; 99.2 8.3E-11 1.8E-15 101.9 9.7 93 18-126 2-122 (165)
26 TIGR00125 cyt_tran_rel cytidyl 99.1 6.7E-11 1.5E-15 88.0 5.8 57 215-273 1-59 (66)
27 COG0669 CoaD Phosphopantethein 99.1 7E-11 1.5E-15 101.9 5.8 67 213-284 2-71 (159)
28 TIGR01526 nadR_NMN_Atrans nico 99.1 1.7E-10 3.7E-15 112.5 7.6 59 213-273 1-59 (325)
29 cd02166 NMNAT_Archaea Nicotina 99.1 3E-10 6.4E-15 100.2 7.2 55 216-273 2-57 (163)
30 cd02168 NMNAT_Nudix Nicotinami 99.0 5.2E-10 1.1E-14 100.4 7.1 56 216-273 2-57 (181)
31 PRK00777 phosphopantetheine ad 99.0 1.4E-09 3.1E-14 95.0 9.6 114 214-341 2-125 (153)
32 PRK13671 hypothetical protein; 99.0 3E-10 6.6E-15 108.9 5.7 62 219-280 6-67 (298)
33 PRK01153 nicotinamide-nucleoti 99.0 7.4E-10 1.6E-14 98.8 7.4 56 215-273 2-58 (174)
34 cd02170 cytidylyltransferase c 99.0 4E-09 8.7E-14 89.9 10.4 98 213-316 1-104 (136)
35 PRK05379 bifunctional nicotina 99.0 1.6E-09 3.5E-14 106.3 7.9 61 211-273 4-64 (340)
36 TIGR01527 arch_NMN_Atrans nico 98.9 2E-09 4.3E-14 95.2 7.2 55 216-273 2-57 (165)
37 cd02156 nt_trans nucleotidyl t 98.9 1.4E-09 3.1E-14 88.6 5.8 94 216-342 2-95 (105)
38 TIGR00124 cit_ly_ligase [citra 98.8 6.3E-09 1.4E-13 101.7 7.0 54 213-273 139-192 (332)
39 smart00764 Citrate_ly_lig Citr 98.7 6.7E-08 1.5E-12 86.8 10.2 108 220-342 6-147 (182)
40 cd02164 PPAT_CoAS phosphopante 98.7 2.6E-08 5.7E-13 86.0 6.4 57 216-273 2-61 (143)
41 cd02171 G3P_Cytidylyltransfera 98.7 1.4E-07 3E-12 79.6 9.4 90 213-304 1-95 (129)
42 KOG3199 Nicotinamide mononucle 98.6 7.9E-08 1.7E-12 86.5 7.6 127 214-348 9-171 (234)
43 cd02169 Citrate_lyase_ligase C 98.6 6.7E-08 1.4E-12 93.2 6.7 54 213-273 114-167 (297)
44 cd02174 CCT CTP:phosphocholine 98.5 5.9E-07 1.3E-11 78.3 9.9 91 214-305 3-99 (150)
45 cd02173 ECT CTP:phosphoethanol 98.5 6.1E-07 1.3E-11 78.3 9.8 91 213-305 2-99 (152)
46 PRK13793 nicotinamide-nucleoti 98.4 5.8E-07 1.3E-11 81.4 8.0 60 212-273 3-62 (196)
47 PRK08099 bifunctional DNA-bind 98.4 4.1E-07 8.9E-12 91.2 7.4 61 211-273 50-117 (399)
48 cd02064 FAD_synthetase_N FAD s 98.4 2.5E-06 5.3E-11 76.4 10.7 119 216-341 2-139 (180)
49 TIGR00339 sopT ATP sulphurylas 98.3 5.6E-06 1.2E-10 82.5 11.6 121 213-339 184-326 (383)
50 cd02172 RfaE_N N-terminal doma 98.1 2E-05 4.3E-10 68.1 9.5 87 212-304 3-97 (144)
51 PF05636 HIGH_NTase1: HIGH Nuc 98.1 1.9E-06 4.1E-11 86.0 3.1 96 218-341 6-103 (388)
52 COG1056 NadR Nicotinamide mono 98.0 9.6E-06 2.1E-10 71.9 6.5 59 212-272 2-60 (172)
53 PTZ00308 ethanolamine-phosphat 98.0 2.1E-05 4.7E-10 77.6 9.6 92 212-305 191-289 (353)
54 TIGR01518 g3p_cytidyltrns glyc 97.9 3.7E-05 8.1E-10 64.6 7.3 86 217-304 2-92 (125)
55 TIGR02199 rfaE_dom_II rfaE bif 97.8 0.00015 3.2E-09 62.6 9.5 113 212-342 10-131 (144)
56 PLN02406 ethanolamine-phosphat 97.6 0.00046 9.9E-09 69.3 10.7 91 211-304 51-151 (418)
57 COG1019 Predicted nucleotidylt 97.4 0.00022 4.7E-09 61.6 5.0 60 211-272 3-64 (158)
58 PRK13670 hypothetical protein; 97.4 0.00093 2E-08 66.9 9.5 89 215-303 3-103 (388)
59 PLN02388 phosphopantetheine ad 97.3 0.00061 1.3E-08 60.9 6.8 62 211-273 17-81 (177)
60 COG0615 TagD Cytidylyltransfer 97.3 0.00077 1.7E-08 57.9 7.0 86 216-304 4-96 (140)
61 PTZ00308 ethanolamine-phosphat 97.2 0.0039 8.4E-08 61.7 12.0 92 211-305 9-106 (353)
62 PF06574 FAD_syn: FAD syntheta 97.1 0.0018 4E-08 56.8 7.1 124 211-341 3-146 (157)
63 PRK01170 phosphopantetheine ad 97.0 0.00069 1.5E-08 66.0 4.6 56 215-273 2-59 (322)
64 PRK05627 bifunctional riboflav 97.0 0.0041 8.9E-08 60.3 9.4 90 215-304 15-124 (305)
65 PF08218 Citrate_ly_lig: Citra 96.9 0.0021 4.5E-08 57.2 5.9 106 222-343 8-148 (182)
66 PRK07143 hypothetical protein; 96.8 0.0095 2.1E-07 57.1 9.8 90 211-304 13-117 (279)
67 TIGR00083 ribF riboflavin kina 96.7 0.0098 2.1E-07 57.3 9.2 87 217-304 2-108 (288)
68 COG1323 Predicted nucleotidylt 96.6 0.0034 7.3E-08 62.0 5.3 57 220-276 8-64 (358)
69 PLN02413 choline-phosphate cyt 96.3 0.016 3.5E-07 55.3 8.1 65 211-276 25-92 (294)
70 PRK11316 bifunctional heptose 95.9 0.035 7.7E-07 56.6 9.0 113 212-342 339-460 (473)
71 PLN02406 ethanolamine-phosphat 95.7 0.064 1.4E-06 54.1 9.6 92 211-304 249-347 (418)
72 COG3053 CitC Citrate lyase syn 95.6 0.051 1.1E-06 52.0 8.1 69 212-288 144-226 (352)
73 COG0196 RibF FAD synthase [Coe 95.2 0.11 2.5E-06 50.3 9.0 92 213-304 15-125 (304)
74 cd00517 ATPS ATP-sulfurylase. 94.8 0.15 3.3E-06 50.5 9.1 56 214-273 158-213 (353)
75 PF01747 ATP-sulfurylase: ATP- 94.7 0.18 3.9E-06 46.6 8.7 56 212-272 20-75 (215)
76 PRK04149 sat sulfate adenylylt 94.3 0.23 4.9E-06 49.9 8.9 55 213-273 187-241 (391)
77 KOG3351 Predicted nucleotidylt 92.7 0.082 1.8E-06 49.4 2.5 61 211-272 140-203 (293)
78 COG2046 MET3 ATP sulfurylase ( 92.5 0.75 1.6E-05 45.6 9.1 57 211-272 181-237 (397)
79 PRK05537 bifunctional sulfate 92.3 0.67 1.5E-05 48.9 9.1 105 213-344 187-292 (568)
80 cd00560 PanC Pantoate-beta-ala 90.4 0.91 2E-05 43.6 7.2 53 225-279 33-90 (277)
81 PRK00380 panC pantoate--beta-a 89.6 1.6 3.5E-05 42.0 8.1 64 225-295 33-101 (281)
82 KOG2803 Choline phosphate cyti 88.4 0.79 1.7E-05 44.4 5.0 60 211-272 196-259 (358)
83 PLN02660 pantoate--beta-alanin 85.8 2.6 5.6E-05 40.6 7.1 55 225-281 32-91 (284)
84 PF06787 UPF0254: Uncharacteri 85.7 6.2 0.00013 34.5 8.5 74 40-130 40-126 (160)
85 TIGR00018 panC pantoate--beta- 85.3 3 6.4E-05 40.2 7.2 55 225-281 33-92 (282)
86 COG4016 Uncharacterized protei 81.9 4.5 9.8E-05 34.6 6.0 67 43-126 44-123 (165)
87 KOG2803 Choline phosphate cyti 80.2 3.9 8.5E-05 39.7 5.8 56 215-273 10-68 (358)
88 COG2870 RfaE ADP-heptose synth 68.7 25 0.00055 35.6 8.3 61 213-275 332-396 (467)
89 KOG4238 Bifunctional ATP sulfu 64.9 8.5 0.00018 38.4 4.1 49 222-272 424-476 (627)
90 COG0414 PanC Panthothenate syn 60.1 31 0.00067 33.1 6.8 64 213-280 22-91 (285)
91 PF02569 Pantoate_ligase: Pant 58.4 44 0.00095 32.2 7.7 70 225-302 33-111 (280)
92 PRK13477 bifunctional pantoate 52.9 52 0.0011 34.5 7.7 53 225-280 31-89 (512)
93 KOG2804 Phosphorylcholine tran 50.1 26 0.00057 34.0 4.6 57 216-273 66-125 (348)
94 PF14552 Tautomerase_2: Tautom 38.5 26 0.00055 27.3 2.2 51 119-171 22-73 (82)
95 PF00455 DeoRC: DeoR C termina 33.2 49 0.0011 28.7 3.4 77 211-287 61-140 (161)
96 PRK10681 DNA-binding transcrip 32.4 67 0.0014 30.1 4.4 75 213-287 136-213 (252)
97 PRK02289 4-oxalocrotonate taut 32.4 1E+02 0.0022 22.0 4.5 34 129-164 4-37 (60)
98 PRK10906 DNA-binding transcrip 31.7 92 0.002 29.2 5.2 75 213-287 135-212 (252)
99 COG0565 LasT rRNA methylase [T 28.7 95 0.0021 29.3 4.6 109 223-344 11-119 (242)
100 PRK00745 4-oxalocrotonate taut 26.1 1.5E+02 0.0033 20.9 4.5 36 128-165 3-38 (62)
101 PRK02220 4-oxalocrotonate taut 25.7 1.5E+02 0.0033 20.8 4.4 34 128-163 3-36 (61)
102 cd03130 GATase1_CobB Type 1 gl 23.9 3.2E+02 0.007 24.3 7.2 67 184-252 13-84 (198)
103 cd00491 4Oxalocrotonate_Tautom 23.1 2E+02 0.0043 19.8 4.5 34 129-164 3-36 (58)
104 TIGR00013 taut 4-oxalocrotonat 20.4 2.4E+02 0.0052 19.8 4.6 34 129-164 3-37 (63)
No 1
>COG1546 CinA Uncharacterized protein (competence- and mitomycin-induced) [General function prediction only]
Probab=100.00 E-value=5.3e-32 Score=234.75 Aligned_cols=144 Identities=22% Similarity=0.227 Sum_probs=130.2
Q ss_pred hHHHHHHHHHHHcCCCcEeeeecccHHHHHHHhcCCCCccccccCceeecChHHHHHHhCCCCC-----CCCCHHHHHHH
Q 018839 3 DACIRGVVEAIHASPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPN-----QFCSQQTAVNM 77 (350)
Q Consensus 3 ~~~~~~~~~~i~~~~~~~~~a~tGgg~~~a~~l~~vpGaS~t~~~~~v~Ys~~~k~~llgv~~~-----g~VS~e~a~~M 77 (350)
++.++.+++.|.+.++++.+||+|.|++++++|+++||||.+|.+|+|+|||++|.++|||+|+ |+||+|||++|
T Consensus 7 ~~la~~v~~~L~~~g~tlatAEScTgGlla~~lt~i~GaS~~f~gg~VtYSneaK~~lLgV~~~tL~~~GaVSe~~a~eM 86 (162)
T COG1546 7 ESLAEAVGELLKERGLTLATAESCTGGLLAAALTDIPGASAVFEGGFVTYSNEAKAKLLGVSPETLEEHGAVSEEVAREM 86 (162)
T ss_pred hHHHHHHHHHHHHcCCEEEEEecchhHHHHHHHHcCCCcHHHhCCceEEEcHHHHHHHhCCCHHHHHHcCCcCHHHHHHH
Confidence 4678899999999999999998888888999999999999999999999999999999999887 99999999999
Q ss_pred HHHHHHHHhhhcCCCCCeEEEEecCcccCC---CCCCCCcEEEEEEEeCCeeEEEEEEeCCchhhHHHHHHH--HHHHHH
Q 018839 78 ALLAYNRALKLSRPGAPVLGVGFTGALAST---HPKLGDHRFHLSTRTSDRLWVSTVTLSKGLRTREQEDKV--SSHLLL 152 (350)
Q Consensus 78 A~~a~~~~~~l~~~~~~~~gia~Tg~ag~~---~~k~g~g~~~i~i~~~~~~~~~~~~l~~~~r~~~~~~~l--~~~l~v 152 (350)
|.++.+++ .+|+|||+||+|||+ +.|| +|+||+|+.......+++++|.++ |+.+|++++ +..+++
T Consensus 87 A~Ga~~~~-------~ad~aiaiTGiAGP~Gg~~~kp-vGtV~ig~~~~~~~~~~~~~~~g~-R~~vR~~a~~~Al~~l~ 157 (162)
T COG1546 87 ARGAKERA-------GADIAIAITGIAGPDGGSEGKP-VGTVYIGLAIGGEAITIRVNFGGD-REQVRERAVRAALELLL 157 (162)
T ss_pred HHHHHHhc-------CCCEEEEEEEeeCCCCCCCCCC-ceEEEEEEEcCCceEEEEEEcCCC-HHHHHHHHHHHHHHHHH
Confidence 99999986 689999999999995 5577 899999999966678999999998 999999887 555666
Q ss_pred HHH
Q 018839 153 KAM 155 (350)
Q Consensus 153 ~~i 155 (350)
++|
T Consensus 158 ~~L 160 (162)
T COG1546 158 RLL 160 (162)
T ss_pred HHh
Confidence 655
No 2
>PRK03661 hypothetical protein; Validated
Probab=99.96 E-value=3e-29 Score=220.69 Aligned_cols=144 Identities=15% Similarity=0.112 Sum_probs=126.3
Q ss_pred ChHHHHHHHHHHHcCCCcEeeeecccHHHHHHHhcCCCCccccccCceeecChHHHHHHhCCCCC-----CCCCHHHHHH
Q 018839 2 TDACIRGVVEAIHASPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPN-----QFCSQQTAVN 76 (350)
Q Consensus 2 ~~~~~~~~~~~i~~~~~~~~~a~tGgg~~~a~~l~~vpGaS~t~~~~~v~Ys~~~k~~llgv~~~-----g~VS~e~a~~ 76 (350)
|+...+.+++.|.+++++|.+||++.|++++++|+++||||.+|.+|+|+|++++|.++|||+++ |+||+|+|++
T Consensus 6 ~~~l~~~v~~~L~~~~~tla~AES~TgGlia~~lt~vpGaS~~f~Gg~VtYs~~~K~~lLgV~~~~i~~~gavS~e~a~~ 85 (164)
T PRK03661 6 LMQLSEQVGQALKARGATVTTAESCTGGWVAKVITDIAGSSAWFERGFVTYSNEAKAQMIGVREETLAQHGAVSEPVVVE 85 (164)
T ss_pred HHHHHHHHHHHHHHCCCEEEeeHhhhhHHHHHHHHcCCCchhhcCCceEEEcHHHHHHHcCCCHHHHHhcCCCCHHHHHH
Confidence 34577889999999999999999888888999999999999999999999999999999999876 9999999999
Q ss_pred HHHHHHHHHhhhcCCCCCeEEEEecCcccCC---CCCCCCcEEEEEEEeCCe-eEEEEEEeCCchhhHHHHHHHHHHHHH
Q 018839 77 MALLAYNRALKLSRPGAPVLGVGFTGALAST---HPKLGDHRFHLSTRTSDR-LWVSTVTLSKGLRTREQEDKVSSHLLL 152 (350)
Q Consensus 77 MA~~a~~~~~~l~~~~~~~~gia~Tg~ag~~---~~k~g~g~~~i~i~~~~~-~~~~~~~l~~~~r~~~~~~~l~~~l~v 152 (350)
||++++++. ++|++||+||+|||+ ++|| +|+||||+.++++ ..+.+++|.++ |+.++++++ ...+
T Consensus 86 MA~g~~~~~-------~ad~~ia~TG~AGP~g~~~~kp-vGtv~i~i~~~~~~~~~~~~~~~g~-R~~ir~~~~--~~AL 154 (164)
T PRK03661 86 MAIGALKAA-------RADYAVSISGIAGPDGGSEEKP-VGTVWFGFASASGEGITRRECFSGD-RDAVRRQAT--AYAL 154 (164)
T ss_pred HHHHHHHHc-------CCCEEEEecccCCCCCCCCCCC-ceEEEEEEEeCCCcEEEEEEecCCC-HHHHHHHHH--HHHH
Confidence 999999985 689999999999995 3477 8999999999765 57778888876 999998887 4444
Q ss_pred HHHH
Q 018839 153 KAMA 156 (350)
Q Consensus 153 ~~i~ 156 (350)
++|.
T Consensus 155 ~~L~ 158 (164)
T PRK03661 155 QTLW 158 (164)
T ss_pred HHHH
Confidence 4443
No 3
>PRK03657 hypothetical protein; Validated
Probab=99.96 E-value=5e-29 Score=219.80 Aligned_cols=143 Identities=9% Similarity=0.096 Sum_probs=127.5
Q ss_pred hHHHHHHHHHHHcCCCcEeeeecccHHHHHHHhcCCCCccccccCceeecChHHHHHHhCCCCC-----CCCCHHHHHHH
Q 018839 3 DACIRGVVEAIHASPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPN-----QFCSQQTAVNM 77 (350)
Q Consensus 3 ~~~~~~~~~~i~~~~~~~~~a~tGgg~~~a~~l~~vpGaS~t~~~~~v~Ys~~~k~~llgv~~~-----g~VS~e~a~~M 77 (350)
++..+.+++.|.+++++|.++|++.|++++++|+++||||.+|.+|+|+|+|++|..+|||+++ |+||+|+|++|
T Consensus 13 ~~l~~~v~~~L~~~~~tla~AES~TGGlias~lt~vpGaS~~f~Gg~VtYs~~~K~~lLgV~~~~i~~~gavS~e~A~~M 92 (170)
T PRK03657 13 ENLTKALSQRLIADQLRLTTAESCTGGKLASALCAAEDTPKFYGAGFVTFTDEAKMKILSVSQQSLERYSAVSEAVVAEM 92 (170)
T ss_pred HHHHHHHHHHHHHCCCEEEeeHhhhhHHHHHHHhcCCCchhhcCCeEEEEcHHHHhHhcCCCHHHHHhcCCCCHHHHHHH
Confidence 5677889999999999999999888888999999999999999999999999999999999876 89999999999
Q ss_pred HHHHHHHHhhhcCCCCCeEEEEecCcccCC---CCCCCCcEEEEEEEeCCeeEEEEEEeCCchhhHHHHHHHHHHHHHHH
Q 018839 78 ALLAYNRALKLSRPGAPVLGVGFTGALAST---HPKLGDHRFHLSTRTSDRLWVSTVTLSKGLRTREQEDKVSSHLLLKA 154 (350)
Q Consensus 78 A~~a~~~~~~l~~~~~~~~gia~Tg~ag~~---~~k~g~g~~~i~i~~~~~~~~~~~~l~~~~r~~~~~~~l~~~l~v~~ 154 (350)
|++++++. ++|++||+||++||+ +.|| +|++|+|+.+++...+.+++|.++ |+.++++++ ...+++
T Consensus 93 A~g~~~~~-------~aDiala~TG~AGP~g~~~~kp-vGtV~iai~~~~~~~~~~~~~~g~-R~~ir~~a~--~~al~~ 161 (170)
T PRK03657 93 ATGAIERA-------DADISIAISGYGGPEGGEDGTP-AGTVWFAWNIKGQTYTARMHFAGD-CETVLAKAV--RFALAQ 161 (170)
T ss_pred HHHHHHHc-------CCCEEEEeccccCCCCCCCCCC-CeEEEEEEEcCCcEEEEEEecCCC-HHHHHHHHH--HHHHHH
Confidence 99999985 689999999999995 3467 899999999988788888899887 999999988 444444
Q ss_pred HH
Q 018839 155 MA 156 (350)
Q Consensus 155 i~ 156 (350)
|.
T Consensus 162 L~ 163 (170)
T PRK03657 162 LL 163 (170)
T ss_pred HH
Confidence 43
No 4
>PF02464 CinA: Competence-damaged protein; InterPro: IPR008136 CinA is the first gene in the competence-inducible (cin) operon, and is thought to be specifically required at some stage in the process of transformation []. This is a C-terminal region of putative competence-damaged proteins from the cin operon.; PDB: 2A9S_A.
Probab=99.96 E-value=2.7e-28 Score=212.96 Aligned_cols=144 Identities=22% Similarity=0.264 Sum_probs=117.5
Q ss_pred hHHHHHHHHHHHcCCCcEeeeecccHHHHHHHhcCCCCccccccCceeecChHHHHHHhCCCCC-----CCCCHHHHHHH
Q 018839 3 DACIRGVVEAIHASPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPN-----QFCSQQTAVNM 77 (350)
Q Consensus 3 ~~~~~~~~~~i~~~~~~~~~a~tGgg~~~a~~l~~vpGaS~t~~~~~v~Ys~~~k~~llgv~~~-----g~VS~e~a~~M 77 (350)
|++.+.+++.|.+++++|.++|++.|++++++|+++||+|++|.+|+|+|++++|.++|||+++ |+||+|+|++|
T Consensus 1 ~~l~~~v~~~L~~~~~tia~aES~TGG~la~~l~~vpGaS~~f~gg~V~Ys~~~K~~~LgV~~~~i~~~g~vS~e~A~~M 80 (154)
T PF02464_consen 1 ESLAKAVVKLLKERGLTIATAESCTGGLLASWLTSVPGASSVFKGGVVTYSNEAKQKLLGVSPETIEKYGAVSEEVARAM 80 (154)
T ss_dssp HHHHHHHHHHHHHHT--EEEEECTTTTHHHHHHTTSTTGGGTEEEEEEE-SHHHHHHHH---HHHHHHH-SSSHHHHHHH
T ss_pred ChHHHHHHHHHHHCCCEEEeehhhhhHHHHHHHhcCCCccceeCCEEEEccHHHHhhhcCcCHHHHHHcCCCcHHHHHHH
Confidence 5778999999999999999998887778999999999999999999999999999999999876 99999999999
Q ss_pred HHHHHHHHhhhcCCCCCeEEEEecCcccCC---CCCCCCcEEEEEEEeCCeeEEEEEEeCCchhhHHHHHHHHHHHHHHH
Q 018839 78 ALLAYNRALKLSRPGAPVLGVGFTGALAST---HPKLGDHRFHLSTRTSDRLWVSTVTLSKGLRTREQEDKVSSHLLLKA 154 (350)
Q Consensus 78 A~~a~~~~~~l~~~~~~~~gia~Tg~ag~~---~~k~g~g~~~i~i~~~~~~~~~~~~l~~~~r~~~~~~~l~~~l~v~~ 154 (350)
|.+++++. .+|+|+|+||.+||+ .++| +|++|+|+..+++.++++++|.++ |+.+++++. ...+++
T Consensus 81 A~~~~~~~-------~adi~lA~TG~aGP~~~~~~~~-~G~v~iai~~~~~~~~~~~~~~g~-R~~ir~~~~--~~al~~ 149 (154)
T PF02464_consen 81 ARGARKRF-------GADIGLAITGVAGPGGGTEGKP-VGTVYIAIAYRGGVWVREVQFPGD-REEIRQRAV--NQALDL 149 (154)
T ss_dssp HHHHHHTS-------S-SEEEEEEE--SSSS--SSS--TTEEEEEEEETTSEEEEEEE--S--HHHHHHHHH--HHHHHH
T ss_pred HHHHHHHh-------CCCEEEEEEeccCCCCcccCCc-CceEEEEEEeCCceEEEEEECCCC-HHHHHHHHH--HHHHHH
Confidence 99999974 689999999999996 3455 899999999999999999999997 999999888 666666
Q ss_pred HHh
Q 018839 155 MAS 157 (350)
Q Consensus 155 i~~ 157 (350)
|.+
T Consensus 150 L~~ 152 (154)
T PF02464_consen 150 LRR 152 (154)
T ss_dssp HH-
T ss_pred HHh
Confidence 654
No 5
>TIGR00199 cinA_cterm competence/damage-inducible protein CinA C-terminal domain. CinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species. Several bacterial species have a protein consisting largely of the C-terminal domain of CinA but lacking the N-terminal domain.
Probab=99.95 E-value=1.4e-27 Score=206.32 Aligned_cols=136 Identities=18% Similarity=0.179 Sum_probs=119.7
Q ss_pred HHHHHHcCCCcEeeeecccHHHHHHHhcCCCCccccccCceeecChHHHHHHhCCCCC-----CCCCHHHHHHHHHHHHH
Q 018839 9 VVEAIHASPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPN-----QFCSQQTAVNMALLAYN 83 (350)
Q Consensus 9 ~~~~i~~~~~~~~~a~tGgg~~~a~~l~~vpGaS~t~~~~~v~Ys~~~k~~llgv~~~-----g~VS~e~a~~MA~~a~~ 83 (350)
+++.|.++++++.++|++.|++++++|+++||||++|.+|+|+|++++|.++|||+++ |+||+|+|++||+++++
T Consensus 1 v~~~L~~~~~tla~aES~TgGlia~~l~~vpGas~~f~gg~VtYs~~~K~~lLgV~~~~i~~~gavS~e~a~~MA~g~~~ 80 (146)
T TIGR00199 1 LSERLKALGLTVATAESCTGGLLAHALTDISGASKYFGGGVVCYTNQVKINLLGVSQETLARFGAVSEECAAEMALGVKE 80 (146)
T ss_pred CHHHHHhCCCcEEEehhhhhHHHHHHHHcCCChHHHhCCceEEEcHHHHHHHhCCCHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3678899999999999888888999999999999999999999999999999999776 89999999999999999
Q ss_pred HHhhhcCCCCCeEEEEecCcccCC---CCCCCCcEEEEEEEeCCe-eEEEEEEeCCchhhHHHHHHHHHHHHHHHH
Q 018839 84 RALKLSRPGAPVLGVGFTGALAST---HPKLGDHRFHLSTRTSDR-LWVSTVTLSKGLRTREQEDKVSSHLLLKAM 155 (350)
Q Consensus 84 ~~~~l~~~~~~~~gia~Tg~ag~~---~~k~g~g~~~i~i~~~~~-~~~~~~~l~~~~r~~~~~~~l~~~l~v~~i 155 (350)
+. ++|++||+||.+||+ ..|| +|++|+|+.++.+ ..+.+++|.++ |+.++++++ ...+++|
T Consensus 81 ~~-------~adi~ia~TG~AGP~~~~~~~p-vGtv~ial~~~~~~~~~~~~~~~g~-R~~ir~~~~--~~Al~~L 145 (146)
T TIGR00199 81 RF-------GADVGIAISGIAGPDGGEEEKP-GGTVWFIWIIAKGQAYTAEMHFAGD-RETIRALAV--RYALHQL 145 (146)
T ss_pred Hc-------CCCEEEEeeccCCCCCCCCCCC-CeEEEEEEEeCCCcEEEEEEecCCC-HHHHHHHHH--HHHHHHh
Confidence 85 689999999999995 3467 7999999998655 67778888876 999999888 5555544
No 6
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=99.94 E-value=1.1e-26 Score=210.01 Aligned_cols=119 Identities=33% Similarity=0.463 Sum_probs=109.0
Q ss_pred CceEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCCCCCCCCcHHHHHHHHhc-----------------c
Q 018839 212 EERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFEK-----------------V 274 (350)
Q Consensus 212 ~k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K~~~~~~~~~~R~~ml~~-----------------~ 274 (350)
.++|++|||||||||+||+.|++.++++++.|+|+++||..|++|+.....+..+|++|++. .
T Consensus 2 ~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~vi~~ps~~~p~k~~~~~a~~~~R~~Ml~la~~~~~~~~v~~~e~~r~ 81 (197)
T COG1057 2 MKKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPVPPHKKKKELASAEHRLAMLELAIEDNPRFEVSDREIKRG 81 (197)
T ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEecCCCCCCCCCccCCCHHHHHHHHHHHHhcCCCcceeHHHHHcC
Confidence 57899999999999999999999999999999999999999999987778999999999972 5
Q ss_pred CCeEEEEchHhHHHHHHhCCC--cEEEEchhhhhhcCCCCccCCCcccHHHhhccCCCCCeeEEEEecCCCC
Q 018839 275 GMTVIISNQPYFYKKAEFFPG--SAFVIGADTAARLIDPKYYDGDPGKMVEVLSGCKRTGCTFIVAGRNIDG 344 (350)
Q Consensus 275 g~~v~is~~~~f~~l~~~~p~--~~fviG~D~l~~l~d~kwy~~~~~~ile~~~~l~~~~~~~~V~~R~~~~ 344 (350)
|.+||++|..+|.+ +++|+ ++||||+|++.+| ++||+++ +|++. |+|+|++|++.+
T Consensus 82 g~sYT~dTl~~~~~--~~~p~~~~~fIiGaD~l~~l--~~W~~~~--ell~~--------~~~vv~~Rp~~~ 139 (197)
T COG1057 82 GPSYTIDTLEHLRQ--EYGPDVELYFIIGADNLASL--PKWYDWD--ELLKL--------VTFVVAPRPGYG 139 (197)
T ss_pred CCcchHHHHHHHHH--HhCCCCcEEEEEehHHhhhh--hhhhhHH--HHHHh--------CCEEEEecCCch
Confidence 77899999998873 56776 9999999999999 9999999 99995 999999999874
No 7
>PRK00549 competence damage-inducible protein A; Provisional
Probab=99.92 E-value=1.1e-24 Score=217.86 Aligned_cols=143 Identities=21% Similarity=0.200 Sum_probs=126.5
Q ss_pred hHHHHHHHHHHHcCCCcEeeeecccHHHHHHHhcCCCCccccccCceeecChHHHHHHhCCCCC-----CCCCHHHHHHH
Q 018839 3 DACIRGVVEAIHASPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPN-----QFCSQQTAVNM 77 (350)
Q Consensus 3 ~~~~~~~~~~i~~~~~~~~~a~tGgg~~~a~~l~~vpGaS~t~~~~~v~Ys~~~k~~llgv~~~-----g~VS~e~a~~M 77 (350)
++..+.+++.|.+++.++.++|+|.|++++++|+++||||++|.+|+|+||+++|.++|||+++ |+||+|+|++|
T Consensus 257 ~~l~~~v~~~L~~~~~tla~aEScTgG~ia~~lt~vpGaS~~f~gg~V~Ys~~~K~~~LgV~~~~l~~~gavS~e~a~~M 336 (414)
T PRK00549 257 DSLEEVVAKLLKEKGLTIATAESCTGGLLAARLTDFPGSSSYFKGGVVTYSNEAKAKLLGVPPETLEEHGAVSEETAEEM 336 (414)
T ss_pred ccHHHHHHHHHHhCCCeEEEecchhHHHHHHHHHhCCChHhhcCCeEEEecHHHHHHhcCCCHHHHhhcCCCCHHHHHHH
Confidence 4678899999999999999999888888999999999999999999999999999999999876 99999999999
Q ss_pred HHHHHHHHhhhcCCCCCeEEEEecCcccCC---CCCCCCcEEEEEEEeCCe-eEEEEEEeCCchhhHHHHHHHHHHHHHH
Q 018839 78 ALLAYNRALKLSRPGAPVLGVGFTGALAST---HPKLGDHRFHLSTRTSDR-LWVSTVTLSKGLRTREQEDKVSSHLLLK 153 (350)
Q Consensus 78 A~~a~~~~~~l~~~~~~~~gia~Tg~ag~~---~~k~g~g~~~i~i~~~~~-~~~~~~~l~~~~r~~~~~~~l~~~l~v~ 153 (350)
|++++++. ++|+|+|+||+|||+ .+|| +|+||+|+..+++ .++.+++|.++ |+.+++.+. ..+++
T Consensus 337 A~g~~~~~-------~ad~~ia~tG~aGP~g~~~~~p-vG~v~i~i~~~~~~~~~~~~~~~g~-r~~ir~~~~--~~aL~ 405 (414)
T PRK00549 337 AEGARKLL-------GADIGISITGVAGPDGGTEEKP-VGTVYIGLATPGGETVVKELILGGS-RSDIRERAV--TYALD 405 (414)
T ss_pred HHHHHHHc-------CCCEEEEeccccCCCCCCCCCC-CeeEEEEEEeCCCcEEEEEEecCCC-HHHHHHHHH--HHHHH
Confidence 99999985 689999999999995 3466 8999999999887 78888999876 888888776 34444
Q ss_pred HHH
Q 018839 154 AMA 156 (350)
Q Consensus 154 ~i~ 156 (350)
+|.
T Consensus 406 ~l~ 408 (414)
T PRK00549 406 LLR 408 (414)
T ss_pred HHH
Confidence 443
No 8
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=99.92 E-value=2.3e-24 Score=214.95 Aligned_cols=143 Identities=11% Similarity=0.034 Sum_probs=126.0
Q ss_pred hHHHHHHHHHHHcCCCcEeeeecccHHHHHHHhcCCCCccccccCceeecChHHHHHHhCCCCC-----CCCCHHHHHHH
Q 018839 3 DACIRGVVEAIHASPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPN-----QFCSQQTAVNM 77 (350)
Q Consensus 3 ~~~~~~~~~~i~~~~~~~~~a~tGgg~~~a~~l~~vpGaS~t~~~~~v~Ys~~~k~~llgv~~~-----g~VS~e~a~~M 77 (350)
+++.+.+++.|.++++++.+||+|.|++++++|+++||||.+|.||+|+|++++|..+|||+++ |+||+|+|.+|
T Consensus 258 ~~l~~~v~~~L~~~~~tla~aES~TgGlla~~l~~vpgas~~f~Gg~V~Ys~~~K~~~Lgv~~~~l~~~gavS~e~a~~M 337 (413)
T TIGR00200 258 EGLPAQISRELQERGFTLTLAESFTGGLLALQLTDHSGASKLFAGGVPLYANEVKPSQLGVLAETAHWIGAVSANHAAGL 337 (413)
T ss_pred hhHHHHHHHHHHhCCCcEEEehhhhhhHHHHHHHcCCCcHHhhCCcEEEecHHHHHHhcCCCHHHHHHhCcCCHHHHHHH
Confidence 4667888999999999999998888888999999999999999999999999999999999876 99999999999
Q ss_pred HHHHHHHHhhhcCCCCCeEEEEecCcccCC--CCCCCCcEEEEEEEeCCeeEEEEEEeCCchhhHHHHHHHHHHHHHHHH
Q 018839 78 ALLAYNRALKLSRPGAPVLGVGFTGALAST--HPKLGDHRFHLSTRTSDRLWVSTVTLSKGLRTREQEDKVSSHLLLKAM 155 (350)
Q Consensus 78 A~~a~~~~~~l~~~~~~~~gia~Tg~ag~~--~~k~g~g~~~i~i~~~~~~~~~~~~l~~~~r~~~~~~~l~~~l~v~~i 155 (350)
|+++++++ ++|+|||+||+|||+ .+|| +|+||+|+.++++..+.+++|.++ |+.+++.+. ...+++|
T Consensus 338 A~g~~~~~-------~ad~~ia~TG~AGP~~~~~~p-vG~V~i~~~~~~~~~~~~~~~~g~-R~~~r~~~~--~~al~~l 406 (413)
T TIGR00200 338 ALGVSGFE-------GEDLGIALTGPAGPDFAERVR-FGTVRYGLAIRQEVAMHALNMLGR-RLGIRDIAA--EHGWIEV 406 (413)
T ss_pred HHHHHHHc-------CCCEEEEEecCCCCCCCCCCc-cceEEEEEEcCCceEEEEEecCCC-HHHHHHHHH--HHHHHHH
Confidence 99999985 689999999999994 4567 899999999887777888889876 888888776 4444444
Q ss_pred H
Q 018839 156 A 156 (350)
Q Consensus 156 ~ 156 (350)
.
T Consensus 407 ~ 407 (413)
T TIGR00200 407 V 407 (413)
T ss_pred H
Confidence 3
No 9
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.91 E-value=1e-24 Score=203.49 Aligned_cols=116 Identities=26% Similarity=0.321 Sum_probs=99.4
Q ss_pred CCceEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCCCCCCCCcHHHHHHHHhc-----------------
Q 018839 211 NEERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFEK----------------- 273 (350)
Q Consensus 211 ~~k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K~~~~~~~~~~R~~ml~~----------------- 273 (350)
.+++|+||||||||||+||+.+++.+.++++.|+|+|+|+.++++| ....++++|++|++.
T Consensus 20 ~~~~IgifGGSFdPiH~GHl~ia~~~~~~l~ld~v~~iP~~~pp~K--~~~~~~~~Rl~M~~lAi~~~~~~~~~~~v~~~ 97 (243)
T PRK06973 20 RPRRIGILGGTFDPIHDGHLALARRFADVLDLTELVLIPAGQPWQK--ADVSAAEHRLAMTRAAAASLVLPGVTVRVATD 97 (243)
T ss_pred CCceEEEECCCCCCCcHHHHHHHHHHHHHcCCCEEEEEECCcCCCC--CCCCCHHHHHHHHHHHHHhccCCCceEEEeHh
Confidence 5678999999999999999999999999999999999999999998 346789999999973
Q ss_pred ----cCCeEEEEchHhHHHHHHhC-CC--cEEEEchhhhhhcCCCCccCCCcccHHHhhccCCCCCeeEEEEecCCC
Q 018839 274 ----VGMTVIISNQPYFYKKAEFF-PG--SAFVIGADTAARLIDPKYYDGDPGKMVEVLSGCKRTGCTFIVAGRNID 343 (350)
Q Consensus 274 ----~g~~v~is~~~~f~~l~~~~-p~--~~fviG~D~l~~l~d~kwy~~~~~~ile~~~~l~~~~~~~~V~~R~~~ 343 (350)
.|.+++++|..++. +.| |+ ++||||+|++.+| ++||+++ +|++. |+|+|++|++.
T Consensus 98 Ei~~~g~syTidTL~~l~---~~~~p~~~~~fiiG~D~l~~l--~~W~~~~--~L~~~--------~~lvV~~R~g~ 159 (243)
T PRK06973 98 EIEHAGPTYTVDTLARWR---ERIGPDASLALLIGADQLVRL--DTWRDWR--RLFDY--------AHLCAATRPGF 159 (243)
T ss_pred hhhCCCCCcHHHHHHHHH---HHcCCCCCEEEEEchhhHhhc--CCcccHH--HHHHh--------CCEEEEECCCC
Confidence 12345555555544 668 66 8999999999999 9999998 99985 99999999874
No 10
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.90 E-value=6.1e-24 Score=193.45 Aligned_cols=117 Identities=26% Similarity=0.410 Sum_probs=102.0
Q ss_pred CceEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCCCCCCCCcHHHHHHHHhc-----------------c
Q 018839 212 EERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFEK-----------------V 274 (350)
Q Consensus 212 ~k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K~~~~~~~~~~R~~ml~~-----------------~ 274 (350)
.++|+||||||||||+||+.|++.|+++++.|+++++|+..|++|......++++|++|++. .
T Consensus 3 ~~~i~i~gGsFdP~H~GH~~l~~~a~~~~~~d~v~~~p~~~~~~k~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~ 82 (203)
T PRK00071 3 MKRIGLFGGTFDPPHYGHLAIAEEAAERLGLDEVWFLPNPGPPHKPQKPLAPLEHRLAMLELAIADNPRFSVSDIELERP 82 (203)
T ss_pred CcEEEEEeeCCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCceEEeHHHHhCC
Confidence 46799999999999999999999999999989999999999999876567899999999973 2
Q ss_pred CCeEEEEchHhHHHHHHhCCC--cEEEEchhhhhhcCCCCccCCCcccHHHhhccCCCCCeeEEEEecCCC
Q 018839 275 GMTVIISNQPYFYKKAEFFPG--SAFVIGADTAARLIDPKYYDGDPGKMVEVLSGCKRTGCTFIVAGRNID 343 (350)
Q Consensus 275 g~~v~is~~~~f~~l~~~~p~--~~fviG~D~l~~l~d~kwy~~~~~~ile~~~~l~~~~~~~~V~~R~~~ 343 (350)
+.+++++|..++. +.||+ ++||||+|++.+| ++||+++ +|++. |+|+|++|++.
T Consensus 83 ~~syT~~tl~~l~---~~~p~~~~~fiiG~D~l~~l--~~W~~~~--~i~~~--------~~~iv~~R~g~ 138 (203)
T PRK00071 83 GPSYTIDTLRELR---ARYPDVELVFIIGADALAQL--PRWKRWE--EILDL--------VHFVVVPRPGY 138 (203)
T ss_pred CCCCHHHHHHHHH---HHCCCCcEEEEEcHHHhhhc--ccccCHH--HHHHh--------CcEEEEeCCCC
Confidence 4566666666655 67887 8999999999999 8999987 88884 89999999864
No 11
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.
Probab=99.90 E-value=4.2e-24 Score=193.11 Aligned_cols=112 Identities=24% Similarity=0.353 Sum_probs=97.9
Q ss_pred EEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCCCCCCCCcHHHHHHHHhc-----------------cCCeEE
Q 018839 217 ILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFEK-----------------VGMTVI 279 (350)
Q Consensus 217 i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K~~~~~~~~~~R~~ml~~-----------------~g~~v~ 279 (350)
||||||||||+||+.|++.|+++++.|+++++|+..|++|......++.+|++|++. .++++|
T Consensus 1 i~gGsFdP~H~GHl~l~~~a~~~~~~d~v~~~p~~~~p~k~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~~~syT 80 (193)
T TIGR00482 1 LFGGSFDPIHYGHLLLAEEALDHLDLDKVIFVPTANPPHKKTYEAASSHHRLAMLKLAIEDNPKFEVDDFEIKRGGPSYT 80 (193)
T ss_pred CccccCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEeHHHHhCCCCCCH
Confidence 589999999999999999999999999999999999999976556899999999972 345666
Q ss_pred EEchHhHHHHHHhCCC--cEEEEchhhhhhcCCCCccCCCcccHHHhhccCCCCCeeEEEEecCCC
Q 018839 280 ISNQPYFYKKAEFFPG--SAFVIGADTAARLIDPKYYDGDPGKMVEVLSGCKRTGCTFIVAGRNID 343 (350)
Q Consensus 280 is~~~~f~~l~~~~p~--~~fviG~D~l~~l~d~kwy~~~~~~ile~~~~l~~~~~~~~V~~R~~~ 343 (350)
++|..++. +.||+ ++||||+|++.+| ++||+++ +|++. |+|+|++|++.
T Consensus 81 ~~tl~~l~---~~~p~~~~~~iiG~D~l~~l--~~W~~~~--~i~~~--------~~~iv~~R~g~ 131 (193)
T TIGR00482 81 IDTLKHLK---KKYPDVELYFIIGADALRSF--PLWKDWQ--ELLEL--------VHLVIVPRPGY 131 (193)
T ss_pred HHHHHHHH---HHCCCCeEEEEEcHHHhhhh--ccccCHH--HHHHh--------CcEEEEeCCCC
Confidence 66666655 66886 8999999999999 8999988 99884 99999999875
No 12
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=99.89 E-value=1.7e-23 Score=204.88 Aligned_cols=116 Identities=22% Similarity=0.385 Sum_probs=100.9
Q ss_pred ceEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCCCCCCCCcHHHHHHHHhc-----------------cC
Q 018839 213 ERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFEK-----------------VG 275 (350)
Q Consensus 213 k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K~~~~~~~~~~R~~ml~~-----------------~g 275 (350)
|+|+||||||||||+||+.|++.|.++++.|+|+|+|+..||+|......+..+|++|++. .+
T Consensus 1 m~i~i~gGsFdP~H~GHl~la~~a~~~~~~d~v~~~p~~~~p~K~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~~ 80 (342)
T PRK07152 1 MKIAIFGGSFDPIHKGHINIAKKAIKKLKLDKLFFVPTYINPFKKKQKASNGEHRLNMLKLALKNLPKMEVSDFEIKRQN 80 (342)
T ss_pred CeEEEEeeCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEeHHHHhCCC
Confidence 4799999999999999999999999999999999999999999976555666999999962 24
Q ss_pred CeEEEEchHhHHHHHHhCCC--cEEEEchhhhhhcCCCCccCCCcccHHHhhccCCCCCeeEEEEecCCC
Q 018839 276 MTVIISNQPYFYKKAEFFPG--SAFVIGADTAARLIDPKYYDGDPGKMVEVLSGCKRTGCTFIVAGRNID 343 (350)
Q Consensus 276 ~~v~is~~~~f~~l~~~~p~--~~fviG~D~l~~l~d~kwy~~~~~~ile~~~~l~~~~~~~~V~~R~~~ 343 (350)
++++++|..++. +.||+ ++||||+|++.+| ++|++++ +|++. |+|+|++|++.
T Consensus 81 ~syt~~tl~~l~---~~~p~~~~~~iiG~D~~~~l--~~W~~~~--~l~~~--------~~~iv~~R~g~ 135 (342)
T PRK07152 81 VSYTIDTIKYFK---KKYPNDEIYFIIGSDNLEKF--KKWKNIE--EILKK--------VQIVVFKRKKN 135 (342)
T ss_pred CCcHHHHHHHHH---HhCCCCcEEEEecHHHhhhc--ccccCHH--HHHHh--------CCEEEEECCCC
Confidence 566777777665 66887 8999999999999 8999988 98884 99999999864
No 13
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
Probab=99.88 E-value=4.6e-23 Score=186.04 Aligned_cols=113 Identities=29% Similarity=0.427 Sum_probs=95.4
Q ss_pred EEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCCCCCCCCcHHHHHHHHhcc-----------------CCe
Q 018839 215 KIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFEKV-----------------GMT 277 (350)
Q Consensus 215 i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K~~~~~~~~~~R~~ml~~~-----------------g~~ 277 (350)
|+||||||||||+||+.|++.|.+++..|+++++|+.+|++|+ ....++++|++|++.. +++
T Consensus 1 i~i~gGsFdP~H~GH~~~~~~a~~~~~~d~v~~~~~~~~~~k~-~~~~~~~~R~~m~~~~~~~~~~i~v~~~e~~~~~~~ 79 (192)
T cd02165 1 IALFGGSFDPPHLGHLAIAEEALEELGLDRVLLLPSANPPHKP-PKPASFEHRLEMLKLAIEDNPKFEVSDIEIKRDGPS 79 (192)
T ss_pred CeEEeeCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCC-CCCCCHHHHHHHHHHHHcCCCCEEEeHHHHhCCCCC
Confidence 6899999999999999999999999998999999999999886 4567999999999741 233
Q ss_pred EEEEchHhHHHHHHhCCC--cEEEEchhhhhhcCCCCccCCCcccHHHhhccCCCCCeeEEEEecCCC
Q 018839 278 VIISNQPYFYKKAEFFPG--SAFVIGADTAARLIDPKYYDGDPGKMVEVLSGCKRTGCTFIVAGRNID 343 (350)
Q Consensus 278 v~is~~~~f~~l~~~~p~--~~fviG~D~l~~l~d~kwy~~~~~~ile~~~~l~~~~~~~~V~~R~~~ 343 (350)
+++++..+ +++.||+ ++||||+|++.++ ++||+++ +|++. ++|+|++|.+.
T Consensus 80 ~t~~tl~~---l~~~~p~~~~~~liG~D~l~~~--~~W~~~~--~i~~~--------~~~iv~~R~g~ 132 (192)
T cd02165 80 YTIDTLEE---LRERYPNAELYFIIGSDNLIRL--PKWYDWE--ELLSL--------VHLVVAPRPGY 132 (192)
T ss_pred CHHHHHHH---HHHhccCCCEEEEEcHHHhhhc--ccccCHH--HHHHh--------CcEEEEeCCCC
Confidence 33333333 4467885 9999999999999 9999998 98885 89999999864
No 14
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.85 E-value=1.4e-21 Score=174.00 Aligned_cols=112 Identities=20% Similarity=0.324 Sum_probs=88.1
Q ss_pred ceEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCCCCCCCCcHHHHHHHHhcc--C---CeEEEEchH---
Q 018839 213 ERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFEKV--G---MTVIISNQP--- 284 (350)
Q Consensus 213 k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K~~~~~~~~~~R~~ml~~~--g---~~v~is~~~--- 284 (350)
++|+||||||||||+||+.+++++ + ..|+|+++|+..++.+. ...++++|++|++.. + +.+.|+++.
T Consensus 2 ~~i~ifGGSFDP~H~GHl~ia~~~-~--~~d~v~~vP~~~~~~~k--~~~~~~~R~~M~~~ai~~~~~~~~~v~~~E~~~ 76 (174)
T PRK08887 2 KKIAVFGSAFNPPSLGHKSVIESL-S--HFDLVLLVPSIAHAWGK--TMLDYETRCQLVDAFIQDLGLSNVQRSDIEQEL 76 (174)
T ss_pred CeEEEeCCCCCCCCHHHHHHHHHh-h--cCCEEEEEECCCCcccC--CCCCHHHHHHHHHHHHhccCCCceEEehHHhhh
Confidence 479999999999999999999984 3 57899999998655443 557899999999741 1 345554432
Q ss_pred -----------hHHHHHHhCCC--cEEEEchhhhhhcCCCCccCCCcccHHHhhccCCCCCeeEEEEecC
Q 018839 285 -----------YFYKKAEFFPG--SAFVIGADTAARLIDPKYYDGDPGKMVEVLSGCKRTGCTFIVAGRN 341 (350)
Q Consensus 285 -----------~f~~l~~~~p~--~~fviG~D~l~~l~d~kwy~~~~~~ile~~~~l~~~~~~~~V~~R~ 341 (350)
....+++.||+ ++||||+|++.+| ++||+++ +|++. |.|+|++|.
T Consensus 77 ~~~~~~~yT~~tl~~l~~~~p~~~~~~iiG~D~l~~l--~~W~~~~--~i~~~--------~~l~~~~~~ 134 (174)
T PRK08887 77 YAPDESVTTYALLTRLQELYPEADLTFVIGPDNFLKF--AKFYKAD--EITQR--------WTVMACPEK 134 (174)
T ss_pred ccCCCCcchHHHHHHHHHHCCCCeEEEEEccchHHHH--HHhCCHH--HHHhh--------CeEEEeCCC
Confidence 11234567886 8999999999999 9999988 88884 889999873
No 15
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=99.83 E-value=7e-21 Score=177.36 Aligned_cols=123 Identities=12% Similarity=0.119 Sum_probs=93.9
Q ss_pred ccCCCceEEEEeecCchhhHHHHHHHHHHHhhcCCCee-----EEEEccCCCCCCCCCCCcHHHHHHHHhc---------
Q 018839 208 QVFNEERKIILSGSFNPLHDGHLKLLEVATRICGNGYP-----CFELSAVNADKPPLSVSQIKDRVKQFEK--------- 273 (350)
Q Consensus 208 ~~~~~k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v-----~~~~s~~n~~K~~~~~~~~~~R~~ml~~--------- 273 (350)
+++....++|+||||||||+||+.|++.|.+.+..+.+ ++.|+..+++|. ...++++|++|++.
T Consensus 17 ~~~~~~~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v~~~~~P~~~~~~k~--~~~~~~~Rl~Ml~lai~~~~~~~ 94 (236)
T PLN02945 17 TGPRTRVVLVATGSFNPPTYMHLRMFELARDALMSEGYHVLGGYMSPVNDAYKKK--GLASAEHRIQMCQLACEDSDFIM 94 (236)
T ss_pred ccCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEEEEEECCCCcccccC--CCCCHHHHHHHHHHHhcCCCCeE
Confidence 34566778999999999999999999999999987763 455665666665 45789999999972
Q ss_pred --------cCCeEEEEchHhHHHHHHhC--------CC--cEEEEchhhhhhcCCC-CccCCCcccHHHhhccCCCCCee
Q 018839 274 --------VGMTVIISNQPYFYKKAEFF--------PG--SAFVIGADTAARLIDP-KYYDGDPGKMVEVLSGCKRTGCT 334 (350)
Q Consensus 274 --------~g~~v~is~~~~f~~l~~~~--------p~--~~fviG~D~l~~l~d~-kwy~~~~~~ile~~~~l~~~~~~ 334 (350)
.+.++++++..++. +.| |+ ++||||+|++.+|.++ +||+++..+|++. |+
T Consensus 95 V~~~E~~~~~~syT~dtL~~l~---~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~~~~W~~~~~~~l~~~--------~~ 163 (236)
T PLN02945 95 VDPWEARQSTYQRTLTVLARVE---TSLNNNGLASEESVRVMLLCGSDLLESFSTPGVWIPDQVRTICRD--------YG 163 (236)
T ss_pred ecHHHhCCCCCccHHHHHHHHH---HHhccccccCCCCceEEEEechhHHHhcCCCCcCCHHHHHHHHHh--------CC
Confidence 23466666665554 444 33 8999999999999433 3887763458874 89
Q ss_pred EEEEecCCC
Q 018839 335 FIVAGRNID 343 (350)
Q Consensus 335 ~~V~~R~~~ 343 (350)
|+|++|++.
T Consensus 164 ~vV~~R~g~ 172 (236)
T PLN02945 164 VVCIRREGQ 172 (236)
T ss_pred EEEEeCCCC
Confidence 999999864
No 16
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.
Probab=99.81 E-value=3.1e-20 Score=171.78 Aligned_cols=116 Identities=19% Similarity=0.181 Sum_probs=88.8
Q ss_pred EEEEeecCchhhHHHHHHHHHHHhhcCCCe------eEEEEccCCCCCCCCCCCcHHHHHHHHhc---------------
Q 018839 215 KIILSGSFNPLHDGHLKLLEVATRICGNGY------PCFELSAVNADKPPLSVSQIKDRVKQFEK--------------- 273 (350)
Q Consensus 215 i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~------v~~~~s~~n~~K~~~~~~~~~~R~~ml~~--------------- 273 (350)
+++|||||||||+||+.+++.|.++++.+. +++.|+..|++|. ...++++|++|++.
T Consensus 2 ~~~~gGSFdPiH~gHl~ia~~a~~~l~~~~~~~~v~~~~~P~~~~~~k~--~~~~~~~Rl~Ml~lai~~~~~~~v~~~E~ 79 (225)
T cd09286 2 VLLACGSFNPITNMHLRMFELARDHLHETGRYEVVGGIISPVNDAYGKK--GLASAKHRVAMCRLAVQSSDWIRVDDWES 79 (225)
T ss_pred EEEeCcCcCCCcHHHHHHHHHHHHHHHhhcCceeEEEEEEeeccCCCCC--CCCCHHHHHHHHHHHHccCCCEEEEehhc
Confidence 689999999999999999999999998664 2346777777773 45789999999973
Q ss_pred --cCCeEEEEchHhHHHHHHhCC-------------------C--cEEEEchhhhhhcCCCC-ccCCCcccHHHhhccCC
Q 018839 274 --VGMTVIISNQPYFYKKAEFFP-------------------G--SAFVIGADTAARLIDPK-YYDGDPGKMVEVLSGCK 329 (350)
Q Consensus 274 --~g~~v~is~~~~f~~l~~~~p-------------------~--~~fviG~D~l~~l~d~k-wy~~~~~~ile~~~~l~ 329 (350)
.+.++|++|..++. +.|| + ++||||+|++.+|.+|+ |++..-++|++.
T Consensus 80 ~~~~~syT~~TL~~l~---~~~p~~~~~~~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~~~~W~~~~~e~ll~~----- 151 (225)
T cd09286 80 LQPEWMRTAKVLRHHR---EEINNKYGGIEGAAKRVLDGSRREVKIMLLCGADLLESFGIPGLWKDADLEEILGE----- 151 (225)
T ss_pred cCCccccHHHHHHHHH---HHhcccccccccccccccccccCCceEEEEecHhHHHhcCCCCcCCHHHHHHHHHh-----
Confidence 23455555555554 5565 3 89999999999995554 774222388885
Q ss_pred CCCeeEEEEecCCC
Q 018839 330 RTGCTFIVAGRNID 343 (350)
Q Consensus 330 ~~~~~~~V~~R~~~ 343 (350)
|+|+|++|++.
T Consensus 152 ---~~~vv~~R~g~ 162 (225)
T cd09286 152 ---FGLVVVERTGS 162 (225)
T ss_pred ---CCEEEEeCCCC
Confidence 89999999874
No 17
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=99.73 E-value=3.4e-18 Score=146.45 Aligned_cols=116 Identities=24% Similarity=0.392 Sum_probs=91.6
Q ss_pred EEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCCCCCCCCcHHHHHHHHhc---cCCeEEEEchHhHHHHHHhC
Q 018839 217 ILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFEK---VGMTVIISNQPYFYKKAEFF 293 (350)
Q Consensus 217 i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K~~~~~~~~~~R~~ml~~---~g~~v~is~~~~f~~l~~~~ 293 (350)
+|+|||||||.||+.|++.|.+.+..+.++++++..+++|.+.+..++++|++|++. ....+.+++...-.. .+.+
T Consensus 1 l~~GsFdP~H~GH~~~l~~a~~~~~~~~vi~v~~~~~~~k~~~~~~~~~~R~~ml~~~~~~~~~i~v~~~e~~~~-~~~~ 79 (157)
T PF01467_consen 1 LFGGSFDPPHNGHLNLLREARELFDEDLVIVVPSDNSPHKDKKPIFSFEERLEMLRAAFKDDPNIEVDDWELEQD-KKKY 79 (157)
T ss_dssp EEEE--TT--HHHHHHHHHHHHHSSESEEEEEEEEHHCHSTTSSSSTHHHHHHHHHHHHTTCTTEEEEEEHHHSS-HHHS
T ss_pred CeeeEcCcccHHHHHHHHHHHHhccccccccccccccccccccccCcHHHHHHHHHHHHhhcCCccccchhHHhH-hhhc
Confidence 689999999999999999999999877799999999999876678899999999985 223477777553222 3445
Q ss_pred CC--cEEEEchhhhhhcCCCCccCCCcccHHHhhccCCCCCeeEEEEecCCCCC
Q 018839 294 PG--SAFVIGADTAARLIDPKYYDGDPGKMVEVLSGCKRTGCTFIVAGRNIDGV 345 (350)
Q Consensus 294 p~--~~fviG~D~l~~l~d~kwy~~~~~~ile~~~~l~~~~~~~~V~~R~~~~~ 345 (350)
|+ ++|++|.|++.++ ++|++.. ++++. ++++|++|.++..
T Consensus 80 ~~~~~~~v~g~D~~~~~--~~~~~~~--~~~~~--------~~~~v~~r~~~~~ 121 (157)
T PF01467_consen 80 PDVKIYFVIGADNLRNF--PKWRDWQ--EILKE--------VNIIVVSRGGDDP 121 (157)
T ss_dssp TSSCEEEEEECTHHEEE--EESTTHH--HHHHH--------HHEEEEEHHHTTT
T ss_pred cccccceeccCCceeee--cCCCcHH--HHHHh--------CCEEEEEcCCCCc
Confidence 55 9999999999999 8999988 88875 7899999985543
No 18
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
Probab=99.53 E-value=3.2e-14 Score=124.38 Aligned_cols=89 Identities=19% Similarity=0.290 Sum_probs=69.8
Q ss_pred EEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCCCCCCCCcHHHHHHHHhcc---CCeEEEEchHhHH-HHH
Q 018839 215 KIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFEKV---GMTVIISNQPYFY-KKA 290 (350)
Q Consensus 215 i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K~~~~~~~~~~R~~ml~~~---g~~v~is~~~~f~-~l~ 290 (350)
|++|||||||||+||+.|+++|.+++ |++++.|+ .|++|. +..++.+|++|++.. .+.+.++....|+ +..
T Consensus 1 i~l~gGsFdP~H~GHl~l~~~a~~~~--d~v~~~~~-~~p~k~--~~~~~~~R~~m~~~a~~~~~~~~v~~~e~yt~dt~ 75 (155)
T TIGR01510 1 IALYPGSFDPVTNGHLDIIKRAAALF--DEVIVAVA-KNPSKK--PLFSLEERVELIKDATKHLPNVRVDVFDGLLVDYA 75 (155)
T ss_pred CEEEEeecCCCcHHHHHHHHHHHHhC--CEEEEEEc-CCCCCC--CCcCHHHHHHHHHHHHhhCCCeEEcCccchHHHHH
Confidence 58999999999999999999999996 89999998 677775 467899999999852 3456777766554 344
Q ss_pred HhCCCcEEEEchhhhhhc
Q 018839 291 EFFPGSAFVIGADTAARL 308 (350)
Q Consensus 291 ~~~p~~~fviG~D~l~~l 308 (350)
+++....|++|.|++.++
T Consensus 76 ~~l~~~~~i~G~~~~~~~ 93 (155)
T TIGR01510 76 KELGATFIVRGLRAATDF 93 (155)
T ss_pred HHcCCCEEEecCcchhhH
Confidence 444445689998886555
No 19
>cd02163 PPAT Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Probab=99.51 E-value=6.2e-14 Score=122.38 Aligned_cols=89 Identities=19% Similarity=0.310 Sum_probs=69.9
Q ss_pred EEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCCCCCCCCcHHHHHHHHhc---cCCeEEEEchHhH-HHHH
Q 018839 215 KIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFEK---VGMTVIISNQPYF-YKKA 290 (350)
Q Consensus 215 i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K~~~~~~~~~~R~~ml~~---~g~~v~is~~~~f-~~l~ 290 (350)
|++|||||||+|+||+.++++|.+++ |++++.|+. |++|. +..+..+|++|++. ..+.+.|++...| ++..
T Consensus 1 i~i~gGsFdP~H~GHl~l~~~a~~~~--d~v~v~~~~-~~~k~--~~~~~~~R~~ml~~a~~~~~~~~v~~~es~t~~~l 75 (153)
T cd02163 1 IAVYPGSFDPITNGHLDIIERASKLF--DEVIVAVAV-NPSKK--PLFSLEERVELIREATKHLPNVEVDGFDGLLVDFA 75 (153)
T ss_pred CEEEEeccCCCCHHHHHHHHHHHHHC--CEEEEEEcC-CCCCC--CCCCHHHHHHHHHHHHcCCCCEEecCCcchHHHHH
Confidence 58999999999999999999999986 789999984 55664 46789999999985 2346777776533 3444
Q ss_pred HhCCCcEEEEchhhhhhc
Q 018839 291 EFFPGSAFVIGADTAARL 308 (350)
Q Consensus 291 ~~~p~~~fviG~D~l~~l 308 (350)
+++..-+|++|.|++.++
T Consensus 76 ~~l~~~~~i~G~d~~~~~ 93 (153)
T cd02163 76 RKHGANVIVRGLRAVSDF 93 (153)
T ss_pred HHcCCCEEEECCcchhhH
Confidence 555555699999997776
No 20
>PRK03673 hypothetical protein; Provisional
Probab=99.51 E-value=1.1e-13 Score=137.60 Aligned_cols=122 Identities=13% Similarity=0.066 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHHcCCCcEeeeecccHHHHHHHhcCCCCccccccCceeecChHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Q 018839 3 DACIRGVVEAIHASPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPNQFCSQQTAVNMALLAY 82 (350)
Q Consensus 3 ~~~~~~~~~~i~~~~~~~~~a~tGgg~~~a~~l~~vpGaS~t~~~~~v~Ys~~~k~~llgv~~~g~VS~e~a~~MA~~a~ 82 (350)
+...+.+++.|.+++.++.+||+|.|+++++.|+++ |.+|.+|+ +|||+++-- ++| ++||++++
T Consensus 253 ~~l~~~v~~lL~~~~~tla~AEScTGGlla~~lt~v---S~~f~gg~----------~LgV~~~~l--~~v-~~MA~g~r 316 (396)
T PRK03673 253 EGLPAQIARRLQERQLSLTLSEQFTAGLLALQLSRA---GAPLLAGE----------VLPSQEETL--AQT-AHWATERR 316 (396)
T ss_pred CCHHHHHHHHHHhcCCcEEEEHhhhhHHHHHHHHhh---hhhhcceE----------EcCCCHHHH--HHH-HHHHHHHH
Confidence 356678889999999999999888888899999999 89999997 899876411 115 99999999
Q ss_pred HHHhhhcCCCCCeEEEEecCcccCCCCCCCCcEEEEEEEeCCeeEEEEEEeCCchhhHHH---HHHHHHHHHHHHHHhc
Q 018839 83 NRALKLSRPGAPVLGVGFTGALASTHPKLGDHRFHLSTRTSDRLWVSTVTLSKGLRTREQ---EDKVSSHLLLKAMASA 158 (350)
Q Consensus 83 ~~~~~l~~~~~~~~gia~Tg~ag~~~~k~g~g~~~i~i~~~~~~~~~~~~l~~~~r~~~~---~~~l~~~l~v~~i~~~ 158 (350)
+++ ++|+|+|+||+|| |+||+|++.+++.++.+++|+++ |+.++ +.+. ..++++|.+.
T Consensus 317 ~~~-------~ad~~ls~TGiAG--------GtV~ial~~~~~~~~~~~~~~g~-R~~ir~~~~~aa--~~AL~~lrr~ 377 (396)
T PRK03673 317 ANH-------FAGLALAVSGLEN--------EHLNFALHTPDGTFAQRVRFSAT-RYSLAIRQEVCA--MMALNMLRRW 377 (396)
T ss_pred HHh-------CCCEEEEeccccC--------CEEEEEEEcCCCEEEEEEEcCCC-hHHHHHHHHHHH--HHHHHHHHHH
Confidence 986 6999999999998 79999999999999999999987 77777 4444 5555555543
No 21
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=99.44 E-value=8.2e-13 Score=111.99 Aligned_cols=117 Identities=21% Similarity=0.238 Sum_probs=85.7
Q ss_pred EEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCCC-CCCCCcHHHHHHHHhccC---CeEEEEchHh-----
Q 018839 215 KIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKP-PLSVSQIKDRVKQFEKVG---MTVIISNQPY----- 285 (350)
Q Consensus 215 i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K~-~~~~~~~~~R~~ml~~~g---~~v~is~~~~----- 285 (350)
|++++|+|||+|+||+.|+++|.+.+ .+.+++.++..++.+. .....+..+|++|++..+ ..+.+-..+.
T Consensus 1 ~~~~~G~Fdp~H~GH~~ll~~a~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~v~~~~~~~~~~~~ 79 (143)
T cd02039 1 VGIIIGRFEPFHLGHLKLIKEALEEA-LDEVIIIIVSNPPKKKRNKDPFSLHERVEMLKEILKDRLKVVPVDFPEVKILL 79 (143)
T ss_pred CeEEeeccCCcCHHHHHHHHHHHHHc-CCceEEEEcCCChhhcccccCCCHHHHHHHHHHhccCCcEEEEEecChhhccC
Confidence 57899999999999999999999987 5678888887766542 235678999999999866 2333332221
Q ss_pred ---HH-HHHHhCCCcEEEEchhhhhhcCCCCccCCCcccHHHhhccCCCCCeeEEEEecCC
Q 018839 286 ---FY-KKAEFFPGSAFVIGADTAARLIDPKYYDGDPGKMVEVLSGCKRTGCTFIVAGRNI 342 (350)
Q Consensus 286 ---f~-~l~~~~p~~~fviG~D~l~~l~d~kwy~~~~~~ile~~~~l~~~~~~~~V~~R~~ 342 (350)
|. .+...++-..+++|.|....+ .+|++ . .+.+. ..++.+++++|..
T Consensus 80 ~~~~~~~~~~~~~~~~~v~G~d~~~~~--~~~~~-~--~~~~~-----~~~~~vv~~~~~~ 130 (143)
T cd02039 80 AVVFILKILLKVGPDKVVVGEDFAFGK--NASYN-K--DLKEL-----FLDIEIVEVPRVR 130 (143)
T ss_pred HHHHHHHHHHHcCCcEEEECCccccCC--chhhh-H--HHHHh-----CCceEEEeeEecC
Confidence 22 233335558899999999999 89997 2 33332 2359999999984
No 22
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.44 E-value=6.5e-13 Score=116.65 Aligned_cols=89 Identities=21% Similarity=0.310 Sum_probs=67.7
Q ss_pred ceEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCCCCCCCCcHHHHHHHHhc---cCCeEEEEchHhH-HH
Q 018839 213 ERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFEK---VGMTVIISNQPYF-YK 288 (350)
Q Consensus 213 k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K~~~~~~~~~~R~~ml~~---~g~~v~is~~~~f-~~ 288 (350)
++++|++|||||+|+||+.++++|.+++ |++++.++. |++|. +..++.+|++|++. .-..+.|++...| .+
T Consensus 1 ~~igi~gGsFdP~H~GHl~~~~~a~~~~--d~v~v~~~~-~~~k~--~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~t~~ 75 (159)
T PRK00168 1 MKIAIYPGSFDPITNGHLDIIERASRLF--DEVIVAVAI-NPSKK--PLFSLEERVELIREATAHLPNVEVVSFDGLLVD 75 (159)
T ss_pred CcEEEEeeecCCCCHHHHHHHHHHHHHC--CEEEEEECC-CCCCC--CCCCHHHHHHHHHHHHcCCCCEEEecCCccHHH
Confidence 4689999999999999999999999996 789898765 56653 56899999999986 2246777776533 33
Q ss_pred HHHhCCCcEEEEchhhhh
Q 018839 289 KAEFFPGSAFVIGADTAA 306 (350)
Q Consensus 289 l~~~~p~~~fviG~D~l~ 306 (350)
..+.+...+|+.|.|++.
T Consensus 76 ~~~~~~~~~~~~gl~~w~ 93 (159)
T PRK00168 76 FAREVGATVIVRGLRAVS 93 (159)
T ss_pred HHHHcCCCEEEecCcchh
Confidence 444444456888888633
No 23
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.36 E-value=6e-12 Score=108.18 Aligned_cols=91 Identities=23% Similarity=0.316 Sum_probs=67.3
Q ss_pred ceEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCCCCCCCCcHHHHHHHHhcc---CCeEEEEch--HhHH
Q 018839 213 ERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFEKV---GMTVIISNQ--PYFY 287 (350)
Q Consensus 213 k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K~~~~~~~~~~R~~ml~~~---g~~v~is~~--~~f~ 287 (350)
+++++|+|||||+|+||++++++|.+.+ |++++.++. |++|. ...++++|++|++.. -+.+.+... ....
T Consensus 1 mkiai~~GSFDPih~GHl~ii~~A~~~~--D~v~v~v~~-np~K~--~~~s~e~R~~~l~~~~~~~~~v~v~~~~~~l~v 75 (140)
T PRK13964 1 MKIAIYPGSFDPFHKGHLNILKKALKLF--DKVYVVVSI-NPDKS--NASDLDSRFKNVKNKLKDFKNVEVLINENKLTA 75 (140)
T ss_pred CeEEEEeeeeCCCCHHHHHHHHHHHHhC--CEEEEEecc-CCCCC--CCCCHHHHHHHHHHHHcCCCCcEEecCcCCcHH
Confidence 3689999999999999999999999996 789888874 67776 457899999999742 234555432 3444
Q ss_pred HHHHhCCCcEEEEchhhhhhc
Q 018839 288 KKAEFFPGSAFVIGADTAARL 308 (350)
Q Consensus 288 ~l~~~~p~~~fviG~D~l~~l 308 (350)
+.++...--++|-|..+..++
T Consensus 76 ~~~~~~~a~~ivrGlR~~~Df 96 (140)
T PRK13964 76 EIAKKLGANFLIRSARNNIDF 96 (140)
T ss_pred HHHHHCCCeEEEEecCCCccH
Confidence 444544335678888875555
No 24
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=99.25 E-value=1.2e-11 Score=108.71 Aligned_cols=57 Identities=19% Similarity=0.261 Sum_probs=52.2
Q ss_pred EEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCCCCCCCCcHHHHHHHHhc
Q 018839 215 KIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFEK 273 (350)
Q Consensus 215 i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K~~~~~~~~~~R~~ml~~ 273 (350)
|+||+|||||+|+||+.+++.|++++ |+++++|+..+++|.+....+..+|++|++.
T Consensus 1 igl~~G~F~P~H~GHl~li~~a~~~~--d~v~vi~~~~~~~~~~~~~~~~~~R~~mi~~ 57 (158)
T cd02167 1 IGIVFGKFAPLHTGHVYLIYKALSQV--DELLIIVGSDDTRDDARTGLPLEKRLRWLRE 57 (158)
T ss_pred CEEEeeccCCCCHHHHHHHHHHHHHC--CEEEEEECCCCcccccCCCCCHHHHHHHHHH
Confidence 58999999999999999999999996 7899999999988876677899999999985
No 25
>PRK00962 hypothetical protein; Provisional
Probab=99.20 E-value=8.3e-11 Score=101.87 Aligned_cols=93 Identities=16% Similarity=0.019 Sum_probs=78.6
Q ss_pred CcEeeeecccHHHHHHHhcCCC-------Cccccc--------cCceeecChHHHHHHhCCCCC---------CCCC---
Q 018839 18 TQAVVYIAGGASQALGMLMSIP-------GATNTV--------LEAVVPYSRMSMIQLLGQIPN---------QFCS--- 70 (350)
Q Consensus 18 ~~~~~a~tGgg~~~a~~l~~vp-------GaS~t~--------~~~~v~Ys~~~k~~llgv~~~---------g~VS--- 70 (350)
.++.+||+..|+.+++.|.++| |+|.++ .+|++.|+++++..+||++++ +++|
T Consensus 2 iTVATAEcfTgG~Iaa~Ihavp~gY~~~~gaS~~~~~~~~v~v~gg~fiyS~e~~~~lL~v~~~~p~~~~~~~kaysee~ 81 (165)
T PRK00962 2 ITVATAECFTHGKIGREIHKIACGYPELEKKSNYSEINGNVSVVASMFIPSLSGIESLLDIEPPEPDYVYKYIKAYNEEN 81 (165)
T ss_pred ceEEeehhhcccHHHHHHHhcccccccccCcchhhhccccceeeeeEEEecHHHHHHhcCCCCccccchhccccccCccc
Confidence 3677777666666999999999 999999 999999999999999999554 7899
Q ss_pred -HHHHHHHHHHHHHHHhhhcCCCCCeEEEEecCcccCCCCCCCCcEEEEEEEeCCee
Q 018839 71 -QQTAVNMALLAYNRALKLSRPGAPVLGVGFTGALASTHPKLGDHRFHLSTRTSDRL 126 (350)
Q Consensus 71 -~e~a~~MA~~a~~~~~~l~~~~~~~~gia~Tg~ag~~~~k~g~g~~~i~i~~~~~~ 126 (350)
+++|..||+++++++ ++|+|||.| | |.|.+=|+|-++...
T Consensus 82 De~vA~~MA~~vr~~l-------~aDiaI~tT--A-------GiGrG~i~i~~~~~~ 122 (165)
T PRK00962 82 DLLVAKLMAEALKNKT-------NCDIAIGTT--A-------GIGRGAICIVTDKNE 122 (165)
T ss_pred CHHHHHHHHHHHHHHh-------CCCEEEEec--c-------ccCCceEEEEeCCce
Confidence 999999999999986 689999998 2 345556777776664
No 26
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=99.15 E-value=6.7e-11 Score=87.98 Aligned_cols=57 Identities=32% Similarity=0.459 Sum_probs=45.9
Q ss_pred EEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEc--cCCCCCCCCCCCcHHHHHHHHhc
Q 018839 215 KIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELS--AVNADKPPLSVSQIKDRVKQFEK 273 (350)
Q Consensus 215 i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s--~~n~~K~~~~~~~~~~R~~ml~~ 273 (350)
|++++|+|||+|.||+.++++|.+.++ +.++++++ ..|+.|.. +..+.++|.+|++.
T Consensus 1 i~~~~G~Fdp~H~GH~~~l~~a~~~~~-~~vv~i~~~~~~~~~~~~-~~~~~~~R~~~~~~ 59 (66)
T TIGR00125 1 RVIFVGTFDPFHLGHLDLLERAKELFD-ELIVGVGSDQFVNPLKGE-PVFSLEERLEMLKA 59 (66)
T ss_pred CEEEcCccCCCCHHHHHHHHHHHHhCC-EEEEEECchHhccccCCC-CCCCHHHHHHHHHH
Confidence 579999999999999999999999877 45555554 34555543 67899999999975
No 27
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=99.13 E-value=7e-11 Score=101.88 Aligned_cols=67 Identities=19% Similarity=0.389 Sum_probs=52.9
Q ss_pred ceEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCCCCCCCCcHHHHHHHHhcc---CCeEEEEchH
Q 018839 213 ERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFEKV---GMTVIISNQP 284 (350)
Q Consensus 213 k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K~~~~~~~~~~R~~ml~~~---g~~v~is~~~ 284 (350)
++++||+|||||+|+||++++++|.+.| |+|++.+. .||.|. ++.++++|++|++.. -++|.+..+.
T Consensus 2 ~~iavypGSFDPiTnGHlDii~RA~~~F--d~viVaV~-~np~K~--plFsleER~~l~~~~~~~l~nV~V~~f~ 71 (159)
T COG0669 2 MKIAVYPGSFDPITNGHLDIIKRASALF--DEVIVAVA-INPSKK--PLFSLEERVELIREATKHLPNVEVVGFS 71 (159)
T ss_pred CeeEEeCCCCCCCccchHHHHHHHHHhc--cEEEEEEE-eCCCcC--CCcCHHHHHHHHHHHhcCCCceEEEecc
Confidence 5799999999999999999999999997 46766664 577774 578999999999852 2345554433
No 28
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=99.10 E-value=1.7e-10 Score=112.51 Aligned_cols=59 Identities=20% Similarity=0.298 Sum_probs=52.1
Q ss_pred ceEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCCCCCCCCcHHHHHHHHhc
Q 018839 213 ERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFEK 273 (350)
Q Consensus 213 k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K~~~~~~~~~~R~~ml~~ 273 (350)
|+|++|+|||||+|+||+.+++.|++++ |+++++|+..++++.+....+.++|++|++.
T Consensus 1 ~~i~i~~GsFdP~H~GHl~ii~~a~~~~--d~v~v~~~~~~~~~~~~~~~~~~~R~~~l~~ 59 (325)
T TIGR01526 1 KTIGVVFGKFYPLHTGHIYLIYEAFSKV--DELHIVVGSLFYDSKAKRPPPVQDRLRWLRE 59 (325)
T ss_pred CcEEEEeeccCCCCHHHHHHHHHHHHHC--CEEEEEECCCCcCccCCCCCCHHHHHHHHHH
Confidence 4699999999999999999999999994 8899999998877444567899999999985
No 29
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=99.07 E-value=3e-10 Score=100.24 Aligned_cols=55 Identities=22% Similarity=0.306 Sum_probs=45.6
Q ss_pred EEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEE-ccCCCCCCCCCCCcHHHHHHHHhc
Q 018839 216 IILSGSFNPLHDGHLKLLEVATRICGNGYPCFEL-SAVNADKPPLSVSQIKDRVKQFEK 273 (350)
Q Consensus 216 ~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~-s~~n~~K~~~~~~~~~~R~~ml~~ 273 (350)
++|+|||||+|+||+.+++.|++++ |++++.+ +.+++.+. ....++.+|++|++.
T Consensus 2 ~v~~G~FdP~H~GHl~~i~~a~~~~--d~l~v~v~s~~~~~~~-~~~~~~~~R~~mi~~ 57 (163)
T cd02166 2 ALFIGRFQPFHLGHLKVIKWILEEV--DELIIGIGSAQESHTL-ENPFTAGERVLMIRR 57 (163)
T ss_pred eEEeeccCCCCHHHHHHHHHHHHHC--CEEEEEecCCCCCCCC-CCCCCHHHHHHHHHH
Confidence 7999999999999999999999996 7788755 55556554 445778999999983
No 30
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=99.02 E-value=5.2e-10 Score=100.36 Aligned_cols=56 Identities=18% Similarity=0.313 Sum_probs=47.3
Q ss_pred EEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCCCCCCCCcHHHHHHHHhc
Q 018839 216 IILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFEK 273 (350)
Q Consensus 216 ~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K~~~~~~~~~~R~~ml~~ 273 (350)
++|+|||||+|+||+.+++.|+++++ ++++.++..+..+...+..++.+|++|++.
T Consensus 2 ~l~~GrF~P~H~GHl~~i~~a~~~~~--~vii~i~s~~~~~~~~~p~~~~eR~~mi~~ 57 (181)
T cd02168 2 LVYIGRFQPFHNGHLAVVLIALEKAK--KVIILIGSARTARNIKNPWTSEEREVMIEA 57 (181)
T ss_pred eEEeeccCCCCHHHHHHHHHHHHHCC--eEEEEeCCCCCCCCCCCCcCHHHHHHHHHH
Confidence 79999999999999999999999975 788877666544444567899999999985
No 31
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=99.02 E-value=1.4e-09 Score=94.99 Aligned_cols=114 Identities=23% Similarity=0.216 Sum_probs=72.1
Q ss_pred eEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCC---CCCCCCCCCcHHHHHHHHhc------cCCeEEEEchH
Q 018839 214 RKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVN---ADKPPLSVSQIKDRVKQFEK------VGMTVIISNQP 284 (350)
Q Consensus 214 ~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n---~~K~~~~~~~~~~R~~ml~~------~g~~v~is~~~ 284 (350)
+.++++|+|||+|.||+.+++.|.+.. |++++.++.++ ..|. .+..++++|++|++. ....+.+....
T Consensus 2 ~~v~~gGtFDplH~GH~~ll~~A~~~~--d~livgi~~d~~~~~~K~-~~i~~~e~R~~~v~~~~~~~~~~~~~~i~~i~ 78 (153)
T PRK00777 2 MKVAVGGTFDPLHDGHRALLRKAFELG--KRVTIGLTSDEFAKSYKK-HKVRPYEVRLKNLKKFLKAVEYDREYEIVKID 78 (153)
T ss_pred cEEEEecccCCCCHHHHHHHHHHHHcC--CEEEEEEcCCccccccCC-CCCCCHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 357999999999999999999999883 67888888764 3343 457799999999973 23344433322
Q ss_pred h-HHHHHHhCCCcEEEEchhhhhhcCCCCccCCCcccHHHhhccCCCCCeeEEEEecC
Q 018839 285 Y-FYKKAEFFPGSAFVIGADTAARLIDPKYYDGDPGKMVEVLSGCKRTGCTFIVAGRN 341 (350)
Q Consensus 285 ~-f~~l~~~~p~~~fviG~D~l~~l~d~kwy~~~~~~ile~~~~l~~~~~~~~V~~R~ 341 (350)
. |-.... -+--.+++|.|++..- + .+-+.....--+.+++++++..
T Consensus 79 d~~gp~~~-~~~d~ivvs~et~~~~--~--------~in~~r~~~gl~~l~i~~v~~~ 125 (153)
T PRK00777 79 DPYGPALE-DDFDAIVVSPETYPGA--L--------KINEIRRERGLKPLEIVVIDFV 125 (153)
T ss_pred ccCCCccc-cCCCEEEEChhhhhhH--H--------HHHHHHHHCCCCceEEEEEeee
Confidence 1 110000 0115789999885544 2 2222211222233788888873
No 32
>PRK13671 hypothetical protein; Provisional
Probab=99.02 E-value=3e-10 Score=108.86 Aligned_cols=62 Identities=23% Similarity=0.332 Sum_probs=53.8
Q ss_pred eecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCCCCCCCCcHHHHHHHHhccCCeEEE
Q 018839 219 SGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFEKVGMTVII 280 (350)
Q Consensus 219 ~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K~~~~~~~~~~R~~ml~~~g~~v~i 280 (350)
--+|||+|+||+.+++.+.++++.|.++++||.++++|+.....+..+|++|+...|..+.|
T Consensus 6 IaeFNP~H~GHl~~~~~a~~~~~~d~vi~vpSg~~~qrg~pa~~~~~~R~~ma~~~G~DLVi 67 (298)
T PRK13671 6 IAEYNPFHNGHIYQINYIKNKFPNEKIIVILSGKYTQRGEIAVASFEKRKKIALKYGVDKVI 67 (298)
T ss_pred EeeeCCccHHHHHHHHHHHHhcCCCEEEEEECcCCCCCCCCCCCCHHHHHHHHHHcCCCEEE
Confidence 35899999999999999999999999999999999999876667999999999765544433
No 33
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=99.01 E-value=7.4e-10 Score=98.77 Aligned_cols=56 Identities=20% Similarity=0.323 Sum_probs=45.8
Q ss_pred EEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEE-ccCCCCCCCCCCCcHHHHHHHHhc
Q 018839 215 KIILSGSFNPLHDGHLKLLEVATRICGNGYPCFEL-SAVNADKPPLSVSQIKDRVKQFEK 273 (350)
Q Consensus 215 i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~-s~~n~~K~~~~~~~~~~R~~ml~~ 273 (350)
.++|+|||||+|+||+.+++.|++. .|++++.+ +.+++.+. ....++.+|++|++.
T Consensus 2 ~gl~~G~F~P~H~GHl~~i~~a~~~--~d~v~v~i~s~~~~~~~-~~p~~~~~R~~mi~~ 58 (174)
T PRK01153 2 RALFIGRFQPFHKGHLEVIKWILEE--VDELIIGIGSAQESHTL-KNPFTAGERILMIRK 58 (174)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHh--CCEEEEEecCCCCCCCC-CCCCCHHHHHHHHHH
Confidence 5899999999999999999999995 57888866 44555554 345788999999984
No 34
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=98.98 E-value=4e-09 Score=89.85 Aligned_cols=98 Identities=19% Similarity=0.331 Sum_probs=69.0
Q ss_pred ceEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCC---CCCCCCCCCcHHHHHHHHhcc-CCe-EEEEchHhHH
Q 018839 213 ERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVN---ADKPPLSVSQIKDRVKQFEKV-GMT-VIISNQPYFY 287 (350)
Q Consensus 213 k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n---~~K~~~~~~~~~~R~~ml~~~-g~~-v~is~~~~f~ 287 (350)
++++++.|+|||+|.||+.++++|.++. +.+++.++..+ ..|. ....++++|.+|++.. +.. +.+.....|.
T Consensus 1 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~--~~l~v~v~~~~~~~~~~~-~~~~~~~eR~~~l~~~~~vd~v~~~~~~~~~ 77 (136)
T cd02170 1 MKRVYAAGTFDIIHPGHIRFLEEAKKLG--DYLIVGVARDETVAKIKR-RPILPEEQRAEVVEALKYVDEVILGHPWSYF 77 (136)
T ss_pred CeEEEEcCccCCCCHHHHHHHHHHHHhC--CEEEEEECCcHHHHhcCC-CCCCCHHHHHHHHHcCCCcCEEEECCCCCHh
Confidence 3688999999999999999999999985 46777777654 2333 3678999999999985 543 3333332333
Q ss_pred -HHHHhCCCcEEEEchhhhhhcCCCCccCC
Q 018839 288 -KKAEFFPGSAFVIGADTAARLIDPKYYDG 316 (350)
Q Consensus 288 -~l~~~~p~~~fviG~D~l~~l~d~kwy~~ 316 (350)
.+.+.+|+ ++++|.|..... .+|.+.
T Consensus 78 ~~l~~~~~~-~vv~G~d~~fg~--~~~~~~ 104 (136)
T cd02170 78 KPLEELKPD-VIVLGDDQKNGV--DEEEVY 104 (136)
T ss_pred HHHHHHCCC-EEEECCCCCCCC--cchhHH
Confidence 24556675 899999885443 445443
No 35
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=98.95 E-value=1.6e-09 Score=106.31 Aligned_cols=61 Identities=15% Similarity=0.298 Sum_probs=50.8
Q ss_pred CCceEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCCCCCCCCcHHHHHHHHhc
Q 018839 211 NEERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFEK 273 (350)
Q Consensus 211 ~~k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K~~~~~~~~~~R~~ml~~ 273 (350)
.+++++||+|||||+|+||+.++++|++++ |++++.|+..+....+.+..++.+|++|++.
T Consensus 4 ~~~~~~~~~G~F~P~H~GHl~~i~~a~~~~--d~l~v~i~s~~~~~~~~~~~~~~~R~~mi~~ 64 (340)
T PRK05379 4 RRYDYLVFIGRFQPFHNGHLAVIREALSRA--KKVIVLIGSADLARSIKNPFSFEERAQMIRA 64 (340)
T ss_pred ccceEEEEeeccCCCCHHHHHHHHHHHHHC--CEEEEEEccCCCCCcCCCCCCHHHHHHHHHH
Confidence 567899999999999999999999999997 7899999754432222356899999999985
No 36
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=98.93 E-value=2e-09 Score=95.16 Aligned_cols=55 Identities=18% Similarity=0.224 Sum_probs=44.8
Q ss_pred EEEeecCchhhHHHHHHHHHHHhhcCCCeeEEE-EccCCCCCCCCCCCcHHHHHHHHhc
Q 018839 216 IILSGSFNPLHDGHLKLLEVATRICGNGYPCFE-LSAVNADKPPLSVSQIKDRVKQFEK 273 (350)
Q Consensus 216 ~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~-~s~~n~~K~~~~~~~~~~R~~ml~~ 273 (350)
++++|||||+|+||+.+++.|++++ |++++. ++.++++|.. ...+..+|++|++.
T Consensus 2 gl~~G~FdP~H~GHl~ii~~a~~~~--D~lii~i~s~~~~~k~~-~p~~~~eR~~mi~~ 57 (165)
T TIGR01527 2 GFYIGRFQPFHLGHLEVIKKIAEEV--DELIIGIGSAQESHTLE-NPFTAGERILMITQ 57 (165)
T ss_pred eEEEeccCCCCHHHHHHHHHHHHHC--CEEEEEEcCCCCCCCCC-CCCCHHHHHHHHHH
Confidence 6899999999999999999999995 778774 5555555543 45677999999964
No 37
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=98.93 E-value=1.4e-09 Score=88.64 Aligned_cols=94 Identities=18% Similarity=0.049 Sum_probs=71.8
Q ss_pred EEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCCCCCCCCcHHHHHHHHhccCCeEEEEchHhHHHHHHhCCC
Q 018839 216 IILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFEKVGMTVIISNQPYFYKKAEFFPG 295 (350)
Q Consensus 216 ~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K~~~~~~~~~~R~~ml~~~g~~v~is~~~~f~~l~~~~p~ 295 (350)
++++|+|||+|+||+.+++.|.+.+ +.+++.++.+++.+...+..++++|+++++..
T Consensus 2 ~~~~G~Fdp~H~GH~~l~~~a~~~~--d~~i~~i~~~~~~~~~~~~~~~~~R~~~l~~~--------------------- 58 (105)
T cd02156 2 ARFPGEPGYLHIGHAKLICRAKGIA--DQCVVRIDDNPPVKVWQDPHELEERKESIEED--------------------- 58 (105)
T ss_pred EEeCCCCCCCCHHHHHHHHHHHHhC--CcEEEEEcCCCcccccCChHHHHHHHHHHHHH---------------------
Confidence 6899999999999999999999987 67999999988887656788999999999763
Q ss_pred cEEEEchhhhhhcCCCCccCCCcccHHHhhccCCCCCeeEEEEecCC
Q 018839 296 SAFVIGADTAARLIDPKYYDGDPGKMVEVLSGCKRTGCTFIVAGRNI 342 (350)
Q Consensus 296 ~~fviG~D~l~~l~d~kwy~~~~~~ile~~~~l~~~~~~~~V~~R~~ 342 (350)
.++.|.|...++.-++| . .+.. .| ..+++.+.+++..
T Consensus 59 -~~~~G~~~~~~~~~e~~---~--~~n~---~l-~~~~e~v~~~~~~ 95 (105)
T cd02156 59 -ISVCGEDFQQNRELYRW---V--KDNI---TL-PVDPEQVELPRLN 95 (105)
T ss_pred -HHHHHhhhhhchhHHHH---H--HHhc---CC-CCCCeEEEccccc
Confidence 26788888877733333 1 2222 12 2357888888754
No 38
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.82 E-value=6.3e-09 Score=101.69 Aligned_cols=54 Identities=20% Similarity=0.217 Sum_probs=45.1
Q ss_pred ceEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCCCCCCCCcHHHHHHHHhc
Q 018839 213 ERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFEK 273 (350)
Q Consensus 213 k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K~~~~~~~~~~R~~ml~~ 273 (350)
++|++++|||||+|+||++|+++|.+.++.+.|++. + .+.+..++++|++|++.
T Consensus 139 ~~i~~~~g~fdP~t~GH~~li~~A~~~~d~~~v~v~----~---~~~~~f~~~~R~~~v~~ 192 (332)
T TIGR00124 139 NKIGSIVMNANPFTNGHRYLIEQAARQCDWLHLFVV----K---EDASLFSYDERFALVKQ 192 (332)
T ss_pred CcEEEEEeCcCCCchHHHHHHHHHHHHCCEEEEEEE----e---CCCCCCCHHHHHHHHHH
Confidence 589999999999999999999999999876555553 1 22457899999999984
No 39
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=98.74 E-value=6.7e-08 Score=86.82 Aligned_cols=108 Identities=15% Similarity=0.083 Sum_probs=69.5
Q ss_pred ecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCCCCCCCCcHHHHHHHHhcc-------------CCeEEEEchHhH
Q 018839 220 GSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFEKV-------------GMTVIISNQPYF 286 (350)
Q Consensus 220 GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K~~~~~~~~~~R~~ml~~~-------------g~~v~is~~~~f 286 (350)
=+|||+|+||+++++.++++++.+.+++.++ + ....++++|++|++.. +..|.--|+|.|
T Consensus 6 ~~~DPiH~GHl~i~~~a~~~~d~~~V~v~p~-----~--~~~~s~e~R~~Mi~~a~~~~~~v~v~~~~~~~v~~~~~~~~ 78 (182)
T smart00764 6 MNANPFTLGHRYLVEQAAAECDWVHLFVVSE-----D--ASLFSFDERFALVKKGTKDLDNVTVHSGSDYIISRATFPSY 78 (182)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCceEEEEEeC-----C--CCCCCHHHHHHHHHHHhccCCCEEEEecCCceeccccChhh
Confidence 3799999999999999999999888888776 1 2356899999999841 112222345555
Q ss_pred HH---------------------HHHhCCCcEEEEchhhhhhcCCCCccCCCcccHHHhhccCCCCCeeEEEEecCC
Q 018839 287 YK---------------------KAEFFPGSAFVIGADTAARLIDPKYYDGDPGKMVEVLSGCKRTGCTFIVAGRNI 342 (350)
Q Consensus 287 ~~---------------------l~~~~p~~~fviG~D~l~~l~d~kwy~~~~~~ile~~~~l~~~~~~~~V~~R~~ 342 (350)
+. +.+.+.--.+++|.|. ++ .+= ..|. .+.|..+.+.+.++.+.+|..
T Consensus 79 ~~~~~~~~~~~~a~lsa~~Fi~~L~~~l~~~~ivvG~df--~F--G~~---~~G~-~~~L~~~~~~g~~v~~I~r~~ 147 (182)
T smart00764 79 FLKEQDVVIKSQTTLDLRIFRKYIAPALGITHRYVGEEP--FS--PVT---AIYN-QTMKQTLLSPAIEVVEIERKK 147 (182)
T ss_pred hcCchhHHHHHHhcCCHHHHHHHHHHHcCceEEEEcCCC--CC--CCC---CccC-HHHHHHHhhCCCEEEEEeccc
Confidence 51 1122222577888885 23 221 1122 233334456688999999963
No 40
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=98.71 E-value=2.6e-08 Score=86.05 Aligned_cols=57 Identities=25% Similarity=0.407 Sum_probs=45.9
Q ss_pred EEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCCCC---CCCCcHHHHHHHHhc
Q 018839 216 IILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPP---LSVSQIKDRVKQFEK 273 (350)
Q Consensus 216 ~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K~~---~~~~~~~~R~~ml~~ 273 (350)
.++||+|||+|.||+.+++.|.+... +++++.++.+++.+.+ ....++++|++|++.
T Consensus 2 v~~GGtFD~lH~GH~~Ll~~a~~~~~-d~v~vgvt~d~~~~~k~~~~~i~s~e~R~~~l~~ 61 (143)
T cd02164 2 VAVGGTFDRLHDGHKILLSVAFLLAG-EKLIIGVTSDELLKNKSLKELIEPYEERIANLHE 61 (143)
T ss_pred EEEcccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeCchhcccCCCCCCCCCHHHHHHHHHH
Confidence 57899999999999999999999876 5688878877644322 235689999999974
No 41
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=98.66 E-value=1.4e-07 Score=79.61 Aligned_cols=90 Identities=27% Similarity=0.352 Sum_probs=62.8
Q ss_pred ceEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCC--CCCCCCCCCcHHHHHHHHhccC-CeEEEE--chHhHH
Q 018839 213 ERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVN--ADKPPLSVSQIKDRVKQFEKVG-MTVIIS--NQPYFY 287 (350)
Q Consensus 213 k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n--~~K~~~~~~~~~~R~~ml~~~g-~~v~is--~~~~f~ 287 (350)
+++++..|+|||+|.||+.++++|.+.. +++++.++.+. +.++.....++++|+++++..| ....+. +...|.
T Consensus 1 ~~~v~~~G~FDgvH~GH~~ll~~a~~~~--~~l~v~v~~d~~~~~~~~~~~~~~~~R~~~l~~~~~vd~v~~~~~~~~f~ 78 (129)
T cd02171 1 MKVVITYGTFDLLHIGHLNLLERAKALG--DKLIVAVSTDEFNAGKGKKAVIPYEQRAEILESIRYVDLVIPETNWEQKI 78 (129)
T ss_pred CcEEEEeeeeccCCHHHHHHHHHHHHhC--CEEEEEEeccHhHHhcCCCCCCCHHHHHHHHHcCCccCEEecCCCccChH
Confidence 3578999999999999999999999985 34556655432 2233345778999999999885 444443 234455
Q ss_pred HHHHhCCCcEEEEchhh
Q 018839 288 KKAEFFPGSAFVIGADT 304 (350)
Q Consensus 288 ~l~~~~p~~~fviG~D~ 304 (350)
+..+.++--.+++|.|.
T Consensus 79 ~~~~~l~~~~vv~G~d~ 95 (129)
T cd02171 79 EDIKKYNVDVFVMGDDW 95 (129)
T ss_pred HHHHHhCCCEEEECCCC
Confidence 43344444578899885
No 42
>KOG3199 consensus Nicotinamide mononucleotide adenylyl transferase [Coenzyme transport and metabolism]
Probab=98.64 E-value=7.9e-08 Score=86.51 Aligned_cols=127 Identities=20% Similarity=0.294 Sum_probs=85.0
Q ss_pred eEEEEeecCchhhHHHHHHHHHHHhhcC-CC---eeEEEEccCCCCCCCCCCCcHHHHHHHHhccC---CeEEEEc----
Q 018839 214 RKIILSGSFNPLHDGHLKLLEVATRICG-NG---YPCFELSAVNADKPPLSVSQIKDRVKQFEKVG---MTVIISN---- 282 (350)
Q Consensus 214 ~i~i~~GSFnP~H~gHl~m~~~a~~~~~-~d---~v~~~~s~~n~~K~~~~~~~~~~R~~ml~~~g---~~v~is~---- 282 (350)
-+++-.|||||+|+.|+.|.+.|...+. .. .|--.+|+.+....++.+.+..+|+.|++..- ..+++++
T Consensus 9 v~l~A~gSFNpiT~~HLrmfElAkd~l~~t~~~~Vv~GimSPV~DaYkKKgLipa~hrv~~~ElAt~~Skwl~vD~wesl 88 (234)
T KOG3199|consen 9 VVLLACGSFNPITNLHLRMFELAKDYLNETGRYRVVKGIMSPVGDAYKKKGLIPAYHRVRMVELATETSKWLMVDGWESL 88 (234)
T ss_pred EEEEEecccCchhHHHHHHHHHHHHHHhccCCeEEEeeEecccchhhhccccchhhhHHHHHHhhhccccceecchhhhc
Confidence 3466789999999999999999998873 22 34445666664444458899999999998532 2233333
Q ss_pred ----------hHhHHH----HHH---hCCC------cEEEEchhhhhhcCCCC--ccCCCcccHHHhhccCCCCCeeEEE
Q 018839 283 ----------QPYFYK----KAE---FFPG------SAFVIGADTAARLIDPK--YYDGDPGKMVEVLSGCKRTGCTFIV 337 (350)
Q Consensus 283 ----------~~~f~~----l~~---~~p~------~~fviG~D~l~~l~d~k--wy~~~~~~ile~~~~l~~~~~~~~V 337 (350)
..++.+ ++. .+|. +-+++|.|.+..+-.|. |..-+ |-..++. ..++|
T Consensus 89 Q~~wt~T~~vlrHhqe~~~~kr~~~~~~~~~k~~~kVmLlcG~Dliesf~~p~~~w~~~d---l~~i~~~-----yGl~c 160 (234)
T KOG3199|consen 89 QKEWTRTVKVLRHHQEELNRKRGGTELSPGTKSDVKVMLLCGGDLIESFGEPNLVWKDED---LRTILGE-----YGLVC 160 (234)
T ss_pred cHHHhhhhHHHHHHHHHHHHHhccccccccccCCceEEEEeCchHHHhccCCCCCcchhh---HHHHHhh-----CcEEE
Confidence 222222 211 1232 77899999999997777 66544 4443333 67899
Q ss_pred EecCCCCCcee
Q 018839 338 AGRNIDGVFKV 348 (350)
Q Consensus 338 ~~R~~~~~f~~ 348 (350)
..|.+++.-.+
T Consensus 161 v~r~gsD~~~~ 171 (234)
T KOG3199|consen 161 VTREGSDVENF 171 (234)
T ss_pred EeccCCCHHHH
Confidence 99999875443
No 43
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.61 E-value=6.7e-08 Score=93.15 Aligned_cols=54 Identities=22% Similarity=0.127 Sum_probs=47.0
Q ss_pred ceEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCCCCCCCCcHHHHHHHHhc
Q 018839 213 ERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFEK 273 (350)
Q Consensus 213 k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K~~~~~~~~~~R~~ml~~ 273 (350)
++++.+-|||||+|+||+.+++.|+++++.+.+++.++ + .+..++++|++|++.
T Consensus 114 ~~~~~~~~~FDPiH~GHl~ii~~a~~~~d~~~V~i~~~-----~--~~~~~~e~R~~ml~~ 167 (297)
T cd02169 114 KKIAAIVMNANPFTLGHRYLVEKAAAENDWVHLFVVSE-----D--KSLFSFADRFKLVKK 167 (297)
T ss_pred CceEEEEecCCCCchHHHHHHHHHHhhCCeEEEEEEcC-----C--CCCCCHHHHHHHHHH
Confidence 68999999999999999999999999999888877764 1 235789999999984
No 44
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=98.53 E-value=5.9e-07 Score=78.28 Aligned_cols=91 Identities=18% Similarity=0.232 Sum_probs=63.3
Q ss_pred eEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCC---CCCCCCCCCcHHHHHHHHhccC--CeEEEEch-HhHH
Q 018839 214 RKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVN---ADKPPLSVSQIKDRVKQFEKVG--MTVIISNQ-PYFY 287 (350)
Q Consensus 214 ~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n---~~K~~~~~~~~~~R~~ml~~~g--~~v~is~~-~~f~ 287 (350)
..++..|+|||+|.||++++++|.++++.|.+++.++.+. ..|+. +..+.++|++|+.+.. ..|.+... ....
T Consensus 3 ~rV~~~G~FDl~H~GHi~~L~~A~~lg~~d~LiVgV~sD~~~~~~k~~-pi~~~~eR~~~l~~~~~Vd~Vi~~~~~~~~~ 81 (150)
T cd02174 3 VRVYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKGP-PVMTEEERYEAVRHCKWVDEVVEGAPYVTTP 81 (150)
T ss_pred eEEEEeCccCCCCHHHHHHHHHHHHhCCCCEEEEEEecCHHHhhcCCC-CcCCHHHHHHHHHhcCCCCeEEECCCCCChH
Confidence 4578899999999999999999999875567777776543 13444 7889999999999764 24555432 2122
Q ss_pred HHHHhCCCcEEEEchhhh
Q 018839 288 KKAEFFPGSAFVIGADTA 305 (350)
Q Consensus 288 ~l~~~~p~~~fviG~D~l 305 (350)
+..+.+.--.++.|.|..
T Consensus 82 ~~i~~~~~d~vv~G~d~~ 99 (150)
T cd02174 82 EFLDKYKCDYVAHGDDIY 99 (150)
T ss_pred HHHHHhCCCEEEECCCCC
Confidence 223333334578897764
No 45
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=98.52 E-value=6.1e-07 Score=78.32 Aligned_cols=91 Identities=21% Similarity=0.308 Sum_probs=64.2
Q ss_pred ceEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccC---CCCCC-CCCCCcHHHHHHHHhccCC--eEEEEchH-h
Q 018839 213 ERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAV---NADKP-PLSVSQIKDRVKQFEKVGM--TVIISNQP-Y 285 (350)
Q Consensus 213 k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~---n~~K~-~~~~~~~~~R~~ml~~~g~--~v~is~~~-~ 285 (350)
++|.++.|+|||+|.||++++++|.+.+ |.+++.+..+ +..|+ ..+..+.++|++++.+..+ .|.+.... .
T Consensus 2 ~~iv~~~G~FD~~H~GHi~~L~~A~~lg--d~liVgV~~D~~~~~~K~~~~pi~~~~eR~~~v~~~~~Vd~V~v~~~~~~ 79 (152)
T cd02173 2 DKVVYVDGAFDLFHIGHIEFLEKARELG--DYLIVGVHDDQTVNEYKGSNYPIMNLHERVLSVLACRYVDEVVIGAPYVI 79 (152)
T ss_pred CeEEEEcCcccCCCHHHHHHHHHHHHcC--CEEEEEEeCcHHHHhhcCCCCCCCCHHHHHHHHHhcCCCCEEEECCCCcc
Confidence 5789999999999999999999999973 5676766643 34454 3578899999999987543 45554322 2
Q ss_pred HHHHHHhCCCcEEEEchhhh
Q 018839 286 FYKKAEFFPGSAFVIGADTA 305 (350)
Q Consensus 286 f~~l~~~~p~~~fviG~D~l 305 (350)
..+..+.+.--.++.|.|+.
T Consensus 80 ~~~~~~~~~~d~vv~G~d~~ 99 (152)
T cd02173 80 TKELIEHFKIDVVVHGKTEE 99 (152)
T ss_pred hHHHHHHhCCCEEEECCCCc
Confidence 22333444335588998875
No 46
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=98.45 E-value=5.8e-07 Score=81.37 Aligned_cols=60 Identities=17% Similarity=0.294 Sum_probs=49.8
Q ss_pred CceEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCCCCCCCCcHHHHHHHHhc
Q 018839 212 EERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFEK 273 (350)
Q Consensus 212 ~k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K~~~~~~~~~~R~~ml~~ 273 (350)
+.++++|.|+|.|+|+||+.+++.|++++ |++++.+...+......+...+.+|..|+..
T Consensus 3 ~yd~~v~iGRFQPfH~GHl~~I~~al~~~--devII~IGSA~~s~t~~NPFTa~ER~~MI~~ 62 (196)
T PRK13793 3 TFDYLVFIGRFQPFHLAHMQTIEIALQQS--RYVILALGSAQMERNIKNPFLAIEREQMILS 62 (196)
T ss_pred ceeEEEEEecCCCCcHHHHHHHHHHHHhC--CEEEEEEccCCCCCCCCCCCCHHHHHHHHHH
Confidence 46899999999999999999999999996 4677777655544445677899999999975
No 47
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=98.44 E-value=4.1e-07 Score=91.15 Aligned_cols=61 Identities=18% Similarity=0.269 Sum_probs=49.1
Q ss_pred CCceEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCC-----C--CCCCCcHHHHHHHHhc
Q 018839 211 NEERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADK-----P--PLSVSQIKDRVKQFEK 273 (350)
Q Consensus 211 ~~k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K-----~--~~~~~~~~~R~~ml~~ 273 (350)
.+++++|+.|+|||+|+||+.+++.|++++ |++++.++..++.. + .....++++|++|++.
T Consensus 50 ~~~~~~v~~G~FdP~H~GH~~lI~~A~~~~--d~l~v~v~~~~~~~~~~~~~~~~~~~~s~~~R~~~l~~ 117 (399)
T PRK08099 50 QMKKIGVVFGKFYPLHTGHIYLIQRACSQV--DELHIIICYDDERDRKLFEDSAMSQQPTVSDRLRWLLQ 117 (399)
T ss_pred hcCcEEEEEEecCCCCHHHHHHHHHHHHHC--CeeEEEEEccCCcchhhcccccccCCCCHHHHHHHHHH
Confidence 456799999999999999999999999995 47777777665431 1 2346789999999985
No 48
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=98.40 E-value=2.5e-06 Score=76.37 Aligned_cols=119 Identities=18% Similarity=0.323 Sum_probs=71.1
Q ss_pred EEEeecCchhhHHHHHHHHHHHhhcC---CCeeEEEEccCC-----CCCCCCCCCcHHHHHHHHhccCCeEEEE------
Q 018839 216 IILSGSFNPLHDGHLKLLEVATRICG---NGYPCFELSAVN-----ADKPPLSVSQIKDRVKQFEKVGMTVIIS------ 281 (350)
Q Consensus 216 ~i~~GSFnP~H~gHl~m~~~a~~~~~---~d~v~~~~s~~n-----~~K~~~~~~~~~~R~~ml~~~g~~v~is------ 281 (350)
.+.-|+|||+|.||+.++++|.+..+ ...+++.+...+ +.+......+.++|++|++..|....+.
T Consensus 2 vv~iG~FDgvH~GH~~ll~~a~~~a~~~~~~~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l~vd~v~~~~f~~~ 81 (180)
T cd02064 2 VVAIGNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLESLGVDYLLVLPFDKE 81 (180)
T ss_pred EEEEecCCccCHHHHHHHHHHHHHHHHcCCCeEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHHHcCCCEEEEeCCCHH
Confidence 46789999999999999999999864 233444433322 2333345788999999999888644432
Q ss_pred ----chHhHHH-HHHhCCCcEEEEchhhhhhcCCCCccCCCcccHHHhhccCCCCCeeEEEEecC
Q 018839 282 ----NQPYFYK-KAEFFPGSAFVIGADTAARLIDPKYYDGDPGKMVEVLSGCKRTGCTFIVAGRN 341 (350)
Q Consensus 282 ----~~~~f~~-l~~~~p~~~fviG~D~l~~l~d~kwy~~~~~~ile~~~~l~~~~~~~~V~~R~ 341 (350)
+...|.+ +....+--.+|+|.|.- + .+=-.+. .+.|+. ...+.|.++++.++.
T Consensus 82 ~~~~s~~~Fi~~il~~~~~~~ivvG~Df~--F--G~~~~g~-~~~L~~--~~~~~g~~v~~v~~~ 139 (180)
T cd02064 82 FASLSAEEFVEDLLVKLNAKHVVVGFDFR--F--GKGRSGD-AELLKE--LGKKYGFEVTVVPPV 139 (180)
T ss_pred HHcCCHHHHHHHHHhhcCCeEEEEccCCC--C--CCCCCCC-HHHHHH--hhhhcCcEEEEeCcE
Confidence 2334443 22222226799999972 1 1111111 122222 223456788888774
No 49
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=98.30 E-value=5.6e-06 Score=82.46 Aligned_cols=121 Identities=18% Similarity=0.235 Sum_probs=79.2
Q ss_pred ceEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCCCCCCCCcHHHHHHHHhcc--C----CeE--EEEchH
Q 018839 213 ERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFEKV--G----MTV--IISNQP 284 (350)
Q Consensus 213 k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K~~~~~~~~~~R~~ml~~~--g----~~v--~is~~~ 284 (350)
++|+- -=||||+|+||..|++.|++.+..|.+++.|+.. +.|+ +..+.+.|+++++.. + .++ .+...+
T Consensus 184 ~~Vva-fqt~nPiHr~H~~l~~~a~e~l~~d~lll~P~~g-~~k~--~~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~e 259 (383)
T TIGR00339 184 DTVVA-FQTRNPMHRAHEELTKRAARSLPNAGVLVHPLVG-LTKP--GDIPAEVRMRAYEVLKEGYPNPERVMLTFLPLA 259 (383)
T ss_pred CeEEE-eccCCCCchHHHHHHHHHHHHcCCCeEEEEeCCC-CCCC--CCCCHHHHHHHHHHHHhhCCCCCceEEEecchH
Confidence 34544 4789999999999999999998888999999988 7776 567899999999842 1 133 333322
Q ss_pred hHH--------H--HHHhCCCcEEEEchhhhhhcCC---CCccCCCcccHHHhhccC-CCCCeeEEEEe
Q 018839 285 YFY--------K--KAEFFPGSAFVIGADTAARLID---PKYYDGDPGKMVEVLSGC-KRTGCTFIVAG 339 (350)
Q Consensus 285 ~f~--------~--l~~~~p~~~fviG~D~l~~l~d---~kwy~~~~~~ile~~~~l-~~~~~~~~V~~ 339 (350)
.-+ . +++.|+...||+|.|.+-=--+ ..||+.. +--+.|..+ ...+++++.++
T Consensus 260 m~~agpreall~Aiir~nyG~th~IiG~Dhag~g~~~~~~~~Y~~~--~aq~i~~~~~~~l~I~~v~~~ 326 (383)
T TIGR00339 260 MRYAGPREAIWHAIIRKNYGATHFIVGRDHAGPGSNSKGQDFYGPY--DAQELFEKYKAELGIKIVPFE 326 (383)
T ss_pred hhcCCcHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCccccCCCcc--hHHHHHHhCccccCceEEecc
Confidence 111 1 4566877899999998432110 1577665 333333233 24455665544
No 50
>cd02172 RfaE_N N-terminal domain of RfaE. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=98.10 E-value=2e-05 Score=68.12 Aligned_cols=87 Identities=16% Similarity=0.274 Sum_probs=60.5
Q ss_pred CceEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCC---CCCCCCCCCcHHHHHHHHhccC-CeEEEE----ch
Q 018839 212 EERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVN---ADKPPLSVSQIKDRVKQFEKVG-MTVIIS----NQ 283 (350)
Q Consensus 212 ~k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n---~~K~~~~~~~~~~R~~ml~~~g-~~v~is----~~ 283 (350)
.+++++..|+||++|.||..++++|.+... .+++.++... ..+ ..+..+.++|.++++..| ..+.+. +.
T Consensus 3 ~~~~vv~~G~FDgvH~GH~~ll~~a~~~~~--~~vv~~~~d~~~~~~~-~~~i~~~~eR~~~l~~lg~VD~vi~~~~~~~ 79 (144)
T cd02172 3 GKTVVLCHGVFDLLHPGHVRHLQAARSLGD--ILVVSLTSDRYVNKGP-GRPIFPEDLRAEVLAALGFVDYVVLFDNPTA 79 (144)
T ss_pred CCEEEEEecccCCCCHHHHHHHHHHHHhCC--eEEEEEeChHHhccCC-CCCCCCHHHHHHHHHccCCccEEEECCCCCH
Confidence 357899999999999999999999999854 4444444332 222 245778999999999988 554432 23
Q ss_pred HhHHHHHHhCCCcEEEEchhh
Q 018839 284 PYFYKKAEFFPGSAFVIGADT 304 (350)
Q Consensus 284 ~~f~~l~~~~p~~~fviG~D~ 304 (350)
..|. +.+.--.+++|.|.
T Consensus 80 ~~fi---~~l~~~~vv~G~d~ 97 (144)
T cd02172 80 LEII---DALQPNIYVKGGDY 97 (144)
T ss_pred HHHH---HHhCCCEEEECCCc
Confidence 4444 33333568899876
No 51
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=98.08 E-value=1.9e-06 Score=86.03 Aligned_cols=96 Identities=23% Similarity=0.322 Sum_probs=44.3
Q ss_pred EeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCCCCCCCCcHHHHHHHHhccCCeEEEEchHhHHHHHHhCCCcE
Q 018839 218 LSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFEKVGMTVIISNQPYFYKKAEFFPGSA 297 (350)
Q Consensus 218 ~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K~~~~~~~~~~R~~ml~~~g~~v~is~~~~f~~l~~~~p~~~ 297 (350)
.---|||+|+||...++++.+.++.|.++.++|.+-..++.....|--.|.+|.-.
T Consensus 6 IIaEYNPFHnGH~y~i~~~k~~~~ad~ii~vMSGnFvQRGEPAi~dKw~RA~~AL~------------------------ 61 (388)
T PF05636_consen 6 IIAEYNPFHNGHLYQIEQAKKITGADVIIAVMSGNFVQRGEPAIIDKWTRAEMALK------------------------ 61 (388)
T ss_dssp -E---TT--HHHHHHHHHHH---TSSEEEEEE--TTSBTSSB-SS-HHHHHHHHHH------------------------
T ss_pred eEEeECCccHHHHHHHHHHhccCCCCEEEEEECCCcccCCCeeeCCHHHHHHHHHH------------------------
Confidence 34579999999999999999999999999999999999988888999999999643
Q ss_pred EEEchhhhhhcCCCCccCCCcccHHH--hhccCCCCCeeEEEEecC
Q 018839 298 FVIGADTAARLIDPKYYDGDPGKMVE--VLSGCKRTGCTFIVAGRN 341 (350)
Q Consensus 298 fviG~D~l~~l~d~kwy~~~~~~ile--~~~~l~~~~~~~~V~~R~ 341 (350)
.|+|.+.+| |-+|.-.+.+..+ +...|...||+.++||-+
T Consensus 62 --~GaDLViEL--P~~~a~qsA~~FA~gaV~lL~~lgvd~l~FGsE 103 (388)
T PF05636_consen 62 --NGADLVIEL--PVVYALQSAEYFARGAVSLLNALGVDYLSFGSE 103 (388)
T ss_dssp --HT-SEEEE-----G------------------------------
T ss_pred --cCCCEEEEC--CCccccccccccccccccccccccccccccccc
Confidence 366666666 6666665555554 334455556677777654
No 52
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=98.05 E-value=9.6e-06 Score=71.88 Aligned_cols=59 Identities=17% Similarity=0.261 Sum_probs=50.4
Q ss_pred CceEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCCCCCCCCcHHHHHHHHh
Q 018839 212 EERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFE 272 (350)
Q Consensus 212 ~k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K~~~~~~~~~~R~~ml~ 272 (350)
+++.+++-|.|-|+|.||+.+++.|+++ .|++++.+...+.....+++.+..+|..|++
T Consensus 2 ~~~rgv~~GRFqP~H~GHl~vi~~al~~--vDeliI~iGSa~~~~t~~nPfTagER~~mi~ 60 (172)
T COG1056 2 RMKRGVYFGRFQPLHTGHLYVIKRALSK--VDELIIVIGSAQESHTLKNPFTAGERIPMIR 60 (172)
T ss_pred CceEEEEEeccCCccHhHHHHHHHHHHh--CCEEEEEEccCcccccccCCCCccchhHHHH
Confidence 5789999999999999999999999998 6788888877665544567788899999987
No 53
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=98.04 E-value=2.1e-05 Score=77.55 Aligned_cols=92 Identities=21% Similarity=0.294 Sum_probs=64.6
Q ss_pred CceEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEcc---CCCCCC-CCCCCcHHHHHHHHhccCC--eEEEEc-hH
Q 018839 212 EERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSA---VNADKP-PLSVSQIKDRVKQFEKVGM--TVIISN-QP 284 (350)
Q Consensus 212 ~k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~---~n~~K~-~~~~~~~~~R~~ml~~~g~--~v~is~-~~ 284 (350)
.++|+++.|+|||+|.||++++++|.+.+ |.+++-+.. .|..|+ ..+..+.++|+.++.+..+ .|.+.. ..
T Consensus 191 ~~kiv~~~G~FDl~H~GHi~~L~~A~~lg--d~LIVgV~sD~~v~~~Kg~~~Pi~~~~eR~~~v~a~~~Vd~Vvi~~~~~ 268 (353)
T PTZ00308 191 GDRIVYVDGSFDLFHIGHIRVLQKARELG--DYLIVGVHEDQVVNEQKGSNYPIMNLNERVLGVLSCRYVDEVVIGAPFD 268 (353)
T ss_pred CCeEEEECCccCCCCHHHHHHHHHHHHhC--CEEEEEEcchHHhHhhcCCCCCCCCHHHHHHHHHhhCCCCeEEEcCCCC
Confidence 45799999999999999999999999975 467676652 244554 3578899999999976532 455542 22
Q ss_pred hHHHHHHhCCCcEEEEchhhh
Q 018839 285 YFYKKAEFFPGSAFVIGADTA 305 (350)
Q Consensus 285 ~f~~l~~~~p~~~fviG~D~l 305 (350)
...++.+.+.--+++-|.|..
T Consensus 269 ~~~~~i~~~~~d~vv~G~d~~ 289 (353)
T PTZ00308 269 VTKEVIDSLHINVVVGGKFSD 289 (353)
T ss_pred ChHHHHHHhCCCEEEECCCCc
Confidence 233344444335678898764
No 54
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=97.90 E-value=3.7e-05 Score=64.60 Aligned_cols=86 Identities=26% Similarity=0.327 Sum_probs=58.1
Q ss_pred EEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCC--CCCCCCCCcHHHHHHHHhccC-CeEEEEc--hHhHHHHHH
Q 018839 217 ILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNA--DKPPLSVSQIKDRVKQFEKVG-MTVIISN--QPYFYKKAE 291 (350)
Q Consensus 217 i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~--~K~~~~~~~~~~R~~ml~~~g-~~v~is~--~~~f~~l~~ 291 (350)
+..|.||++|.||..++++|.++. +.+++.++..+. .++.....+.++|..+++..+ ....+.. ...|.+.-+
T Consensus 2 ~~~G~FDg~H~GH~~~l~~a~~~~--~~~iv~v~~d~~~~~~~~~~i~~~eeR~~~l~~~~~Vd~vi~~~~~~~f~~~l~ 79 (125)
T TIGR01518 2 LTYGTFDLLHWGHINLLERAKQLG--DYLIVALSTDEFNLQKQKKAYHSYEHRKLILETIRYVDLVIPEKSWEQKKQDII 79 (125)
T ss_pred EEcceeCCCCHHHHHHHHHHHHcC--CEEEEEEechHHHhhcCCCCCCCHHHHHHHHHcCCCccEEecCCCccchHHHHH
Confidence 456999999999999999999875 345555454321 222345678999999999876 4443443 234544334
Q ss_pred hCCCcEEEEchhh
Q 018839 292 FFPGSAFVIGADT 304 (350)
Q Consensus 292 ~~p~~~fviG~D~ 304 (350)
.++--.+++|.|.
T Consensus 80 ~~~~~~vv~G~D~ 92 (125)
T TIGR01518 80 DFNIDVFVMGDDW 92 (125)
T ss_pred HcCCCEEEECCCc
Confidence 4444568899987
No 55
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=97.80 E-value=0.00015 Score=62.63 Aligned_cols=113 Identities=15% Similarity=0.196 Sum_probs=72.6
Q ss_pred CceEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCC---CCCC-CCCCcHHHHHHHHhccC-CeEEEE----c
Q 018839 212 EERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNA---DKPP-LSVSQIKDRVKQFEKVG-MTVIIS----N 282 (350)
Q Consensus 212 ~k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~---~K~~-~~~~~~~~R~~ml~~~g-~~v~is----~ 282 (350)
++++++..|.||-+|.||+.++++|.+..+. +++.++..+. .|+. .+..+.++|.++++..+ ....+- +
T Consensus 10 ~~~~v~~~G~FDgvH~GH~~ll~~a~~~~~~--~~v~v~~d~~~~~~k~~~~~l~~~eeR~~~l~~~~~VD~vi~f~~~~ 87 (144)
T TIGR02199 10 GKKIVFTNGCFDILHAGHVSYLQQARALGDR--LVVGVNSDASVKRLKGETRPINPEEDRAEVLAALSSVDYVVIFDEDT 87 (144)
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHhCCc--cEEEEECCcCHHHhCCCCCCcCCHHHHHHHHHhcCCCCEEEECCCCC
Confidence 4578899999999999999999999998543 4444444321 2332 45788999999999985 554442 2
Q ss_pred hHhHHHHHHhCCCcEEEEchhhhhhcCCCCccCCCcccHHHhhccCCCCCeeEEEEecCC
Q 018839 283 QPYFYKKAEFFPGSAFVIGADTAARLIDPKYYDGDPGKMVEVLSGCKRTGCTFIVAGRNI 342 (350)
Q Consensus 283 ~~~f~~l~~~~p~~~fviG~D~l~~l~d~kwy~~~~~~ile~~~~l~~~~~~~~V~~R~~ 342 (350)
...|. +.+.--.+++|.|.-- |...+ .+.++ +.|.++.+.|+..
T Consensus 88 ~~~fi---~~l~~~~vv~G~d~~~------~~~~~-~~~~~------~~g~~v~~~~~~~ 131 (144)
T TIGR02199 88 PEELI---GELKPDILVKGGDYKV------ETLVG-AELVE------SYGGQVVLLPFVE 131 (144)
T ss_pred HHHHH---HHhCCCEEEECCCCCC------Ccchh-HHHHH------HcCCEEEEEeCCC
Confidence 33444 3444456899988521 11110 12233 3457889998864
No 56
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=97.60 E-value=0.00046 Score=69.32 Aligned_cols=91 Identities=20% Similarity=0.264 Sum_probs=59.9
Q ss_pred CCceEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCC---CCCCCCCCCcHHHHHHHHhccCC--eEEEEch--
Q 018839 211 NEERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVN---ADKPPLSVSQIKDRVKQFEKVGM--TVIISNQ-- 283 (350)
Q Consensus 211 ~~k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n---~~K~~~~~~~~~~R~~ml~~~g~--~v~is~~-- 283 (350)
.+...++++|+|||+|.||+.++++|.+.. |++++-+..+. ..|+ .+..+.++|+++++.... .|.+...
T Consensus 51 ~~~~rV~~~G~FDllH~GH~~~L~qAk~lG--d~LIVGV~SDe~i~~~Kg-~PV~~~eER~~~v~alk~VD~Vv~~apy~ 127 (418)
T PLN02406 51 KKPVRVYMDGCFDMMHYGHANALRQARALG--DELVVGVVSDEEIIANKG-PPVTPMHERMIMVSGVKWVDEVIPDAPYA 127 (418)
T ss_pred CCceEEEEcCeeCCCCHHHHHHHHHHHHhC--CEEEEEEecChhhhccCC-CCcCCHHHHHHHHHhcCCCceEEeCCccc
Confidence 445678999999999999999999999985 46666665542 2344 367899999999986432 3333211
Q ss_pred --HhHH-HHHHhCCCcEEEEchhh
Q 018839 284 --PYFY-KKAEFFPGSAFVIGADT 304 (350)
Q Consensus 284 --~~f~-~l~~~~p~~~fviG~D~ 304 (350)
..|- ++-+.+.--++|.|.|.
T Consensus 128 ~~~d~~~~li~~~~~D~vVhGdD~ 151 (418)
T PLN02406 128 ITEEFMNKLFNEYNIDYIIHGDDP 151 (418)
T ss_pred cchHHHHHHHHHhCCCEEEECCCc
Confidence 1221 22122322458889884
No 57
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=97.42 E-value=0.00022 Score=61.65 Aligned_cols=60 Identities=30% Similarity=0.415 Sum_probs=48.0
Q ss_pred CCceEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCCC--CCCCCcHHHHHHHHh
Q 018839 211 NEERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKP--PLSVSQIKDRVKQFE 272 (350)
Q Consensus 211 ~~k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K~--~~~~~~~~~R~~ml~ 272 (350)
++....++||+|||+|.||..|++.|.+.- +.+.+-+|.+...|. .-...+|..|++-+.
T Consensus 3 ~kfm~vavGGTFd~LH~GHk~LL~~A~~~G--~~v~IGlTsDe~~k~~k~~~i~p~~~R~~~l~ 64 (158)
T COG1019 3 IKFMKVAVGGTFDRLHDGHKKLLEVAFEIG--DRVTIGLTSDELAKKKKKEKIEPYEVRLRNLR 64 (158)
T ss_pred ccceEEEecccchhhhhhHHHHHHHHHHhC--CeEEEEEccHHHHHHhccccCCcHHHHHHHHH
Confidence 456788999999999999999999999863 367788887765442 345678999999875
No 58
>PRK13670 hypothetical protein; Provisional
Probab=97.36 E-value=0.00093 Score=66.88 Aligned_cols=89 Identities=17% Similarity=0.280 Sum_probs=62.5
Q ss_pred EEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCCCCCCCCcHHHHHHHHhccCCeEEE--------EchHhH
Q 018839 215 KIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFEKVGMTVII--------SNQPYF 286 (350)
Q Consensus 215 i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K~~~~~~~~~~R~~ml~~~g~~v~i--------s~~~~f 286 (350)
++-+---|||+|+||..+++++.+..+.+.++.+++..-..++.....+..+|.+|+...|..+.+ .+...|
T Consensus 3 ~~GIIaEfdg~H~GH~~~i~~a~~~a~~~~~~~Vmp~~f~qrg~p~i~~~~~R~~~a~~~GvD~vielpf~~a~~sae~F 82 (388)
T PRK13670 3 VTGIIVEYNPFHNGHLYHLNQAKKLTNADVTIAVMSGNFVQRGEPAIVDKWTRAKMALENGVDLVVELPFLYSVQSADFF 82 (388)
T ss_pred eeEEEeeeCCcCHHHHHHHHHHHHHHhCCCcEEEecHHHhCCCCCCCCCHHHHHHHHHHcCCCEEEEeCCchHhCCHHHH
Confidence 333446799999999999999999887665555555443444444478999999999988865443 345566
Q ss_pred HH----HHHhCCCcEEEEchh
Q 018839 287 YK----KAEFFPGSAFVIGAD 303 (350)
Q Consensus 287 ~~----l~~~~p~~~fviG~D 303 (350)
.+ +-+...--.+++|.|
T Consensus 83 ~~~aV~iL~~l~v~~lv~G~e 103 (388)
T PRK13670 83 AEGAVSILDALGVDSLVFGSE 103 (388)
T ss_pred HHhHHHHHHHcCCCEEEEcCC
Confidence 65 223333367899999
No 59
>PLN02388 phosphopantetheine adenylyltransferase
Probab=97.31 E-value=0.00061 Score=60.94 Aligned_cols=62 Identities=23% Similarity=0.388 Sum_probs=46.7
Q ss_pred CCceEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCCC---CCCCCcHHHHHHHHhc
Q 018839 211 NEERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKP---PLSVSQIKDRVKQFEK 273 (350)
Q Consensus 211 ~~k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K~---~~~~~~~~~R~~ml~~ 273 (350)
.....++.+|+||.+|.||..|++.|.+.... .+++-++..+..++ .....++++|.+.++.
T Consensus 17 ~~~~~Vv~gGtFDgLH~GHq~LL~~A~~~a~~-~vvIgft~~p~l~~k~~~~~I~~~e~R~~~l~~ 81 (177)
T PLN02388 17 NSYGAVVLGGTFDRLHDGHRLFLKAAAELARD-RIVIGVCDGPMLSKKQFAELIQPIEERMHNVEE 81 (177)
T ss_pred CcCCeEEEEecCCccCHHHHHHHHHHHHhhhc-CEEEecCCChhhcccCCCcccCCHHHHHHHHHH
Confidence 45678899999999999999999999987542 46666665554322 1236689999999874
No 60
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=97.30 E-value=0.00077 Score=57.85 Aligned_cols=86 Identities=22% Similarity=0.340 Sum_probs=58.4
Q ss_pred EEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccC--CCC-CCCCCCCcHHHHHHHHhccCC--eEEEEchHh--HHH
Q 018839 216 IILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAV--NAD-KPPLSVSQIKDRVKQFEKVGM--TVIISNQPY--FYK 288 (350)
Q Consensus 216 ~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~--n~~-K~~~~~~~~~~R~~ml~~~g~--~v~is~~~~--f~~ 288 (350)
.+..|.||=+|.||+.++++|.+.. ++.++..+.. +.. |+.++..+-++|+++++...+ .+.+...-. +..
T Consensus 4 V~~~GtFDilH~GHi~~L~~Ak~lG--d~liVv~a~de~~~~~~k~~pi~~~~qR~evl~s~ryVD~vi~~~p~~~~~~~ 81 (140)
T COG0615 4 VWADGTFDILHPGHIEFLRQAKKLG--DELIVVVARDETVIKRKKRKPIMPEEQRAEVLESLRYVDEVILGAPWDIKFED 81 (140)
T ss_pred EEEeeEEEEechhHHHHHHHHHHhC--CeEEEEEeccHHHHHhcCCCCCCCHHHHHHHHHcCcchheeeeCCccccChHH
Confidence 6789999999999999999999986 5555555554 232 455778899999999997654 233322111 222
Q ss_pred HHHhCCCcEEEEchhh
Q 018839 289 KAEFFPGSAFVIGADT 304 (350)
Q Consensus 289 l~~~~p~~~fviG~D~ 304 (350)
+.++-|+ .+++|.|.
T Consensus 82 i~~~k~D-iv~lG~D~ 96 (140)
T COG0615 82 IEEYKPD-IVVLGDDQ 96 (140)
T ss_pred HHHhCCC-EEEECCCC
Confidence 2343344 47888775
No 61
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=97.22 E-value=0.0039 Score=61.71 Aligned_cols=92 Identities=18% Similarity=0.252 Sum_probs=62.9
Q ss_pred CCceEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCC---CCCCCCCCCcHHHHHHHHhccC-CeEEEEchH--
Q 018839 211 NEERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVN---ADKPPLSVSQIKDRVKQFEKVG-MTVIISNQP-- 284 (350)
Q Consensus 211 ~~k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n---~~K~~~~~~~~~~R~~ml~~~g-~~v~is~~~-- 284 (350)
.++.+++..|.||-+|.||..++++|.+.. +.+++.+.... ..|+. +..+.++|+++++..+ ....+...+
T Consensus 9 ~~~~~v~~~G~FD~vH~GH~~~L~qAk~~g--~~Livgv~~d~~i~~~K~~-pi~~~eeR~~~l~~~~~VD~Vv~~~p~~ 85 (353)
T PTZ00308 9 PGTIRVWVDGCFDMLHFGHANALRQARALG--DELFVGCHSDEEIMRNKGP-PVMHQEERYEALRACKWVDEVVEGYPYT 85 (353)
T ss_pred CCcEEEEEEeecccCCHHHHHHHHHHHHhC--CEEEEEeCCHHHHhhcCCC-CCCCHHHHHHHHHhcCCccEEEECCCCC
Confidence 445788899999999999999999999974 45767776553 23443 5889999999999887 444443222
Q ss_pred hHHHHHHhCCCcEEEEchhhh
Q 018839 285 YFYKKAEFFPGSAFVIGADTA 305 (350)
Q Consensus 285 ~f~~l~~~~p~~~fviG~D~l 305 (350)
...+..+.+.--+++.|.|.-
T Consensus 86 ~~~~fI~~l~~d~vv~GdD~~ 106 (353)
T PTZ00308 86 TRLEDLERLECDFVVHGDDIS 106 (353)
T ss_pred chHHHHHHhCCCEEEECCCCC
Confidence 111111333224688999863
No 62
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=97.06 E-value=0.0018 Score=56.76 Aligned_cols=124 Identities=26% Similarity=0.408 Sum_probs=64.4
Q ss_pred CCceEEEEeecCchhhHHHHHHHHHHHhhcCC-CeeEEEEccCC-------CCCCCCCCCcHHHHHHHHhccCCeEEE-E
Q 018839 211 NEERKIILSGSFNPLHDGHLKLLEVATRICGN-GYPCFELSAVN-------ADKPPLSVSQIKDRVKQFEKVGMTVII-S 281 (350)
Q Consensus 211 ~~k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~-d~v~~~~s~~n-------~~K~~~~~~~~~~R~~ml~~~g~~v~i-s 281 (350)
..++..+.=|.||-+|.||..+++.+.+.... +.....+|..+ +++....+.+..+|.++++..|..+.+ -
T Consensus 3 ~~~~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~Gvd~~~~~ 82 (157)
T PF06574_consen 3 NNKKSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESLGVDYVIVI 82 (157)
T ss_dssp T-S-EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHTTESEEEEE
T ss_pred CCCCcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHcCCCEEEEe
Confidence 34567888999999999999999999987632 22223333332 244444588999999999998864432 2
Q ss_pred c---------hHhHHHH--HHhCCCcEEEEchhhhhhcCCCCccCCCcccHHHhhccCCCCCeeEEEEecC
Q 018839 282 N---------QPYFYKK--AEFFPGSAFVIGADTAARLIDPKYYDGDPGKMVEVLSGCKRTGCTFIVAGRN 341 (350)
Q Consensus 282 ~---------~~~f~~l--~~~~p~~~fviG~D~l~~l~d~kwy~~~~~~ile~~~~l~~~~~~~~V~~R~ 341 (350)
. ...|.+. .+.+.--.+|+|.|. ++ .+--.+. -+.|.. ...+.|.++.+.+..
T Consensus 83 ~F~~~~~~ls~~~Fi~~iL~~~l~~~~ivvG~Df--rF--G~~~~G~-~~~L~~--~~~~~g~~v~~v~~~ 146 (157)
T PF06574_consen 83 PFTEEFANLSPEDFIEKILKEKLNVKHIVVGEDF--RF--GKNRSGD-VELLKE--LGKEYGFEVEVVPPV 146 (157)
T ss_dssp -CCCHHCCS-HHHHHHHHCCCHCTEEEEEEETT---EE--SGGGEEE-HHHHHH--CTTTT-SEEEEE---
T ss_pred cchHHHHcCCHHHHHHHHHHhcCCccEEEEccCc--cC--CCCCCCC-HHHHHH--hcccCceEEEEECCE
Confidence 2 3344431 112323789999995 22 2211111 122222 223446777777654
No 63
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=97.04 E-value=0.00069 Score=66.00 Aligned_cols=56 Identities=25% Similarity=0.351 Sum_probs=44.1
Q ss_pred EEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCC-CC-CCCCCcHHHHHHHHhc
Q 018839 215 KIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNAD-KP-PLSVSQIKDRVKQFEK 273 (350)
Q Consensus 215 i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~-K~-~~~~~~~~~R~~ml~~ 273 (350)
+.+.+|+||++|.||..+++.|.+.. |.+++.+|.+... |. ..+ .++++|+++++.
T Consensus 2 ~V~vgGTFD~lH~GH~~lL~~A~~~g--d~LiVgvt~D~~~~~~k~~~-~~~e~R~~~v~~ 59 (322)
T PRK01170 2 ITVVGGTFSKLHKGHKALLKKAIETG--DEVVIGLTSDEYVRKNKVYP-IPYEDRKRKLEN 59 (322)
T ss_pred EEEEccccccCChHHHHHHHHHHHcC--CEEEEEEccHHHHHhcCCCC-CCHHHHHHHHHH
Confidence 57899999999999999999998753 6778888866422 22 234 899999999875
No 64
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=96.98 E-value=0.0041 Score=60.34 Aligned_cols=90 Identities=21% Similarity=0.397 Sum_probs=60.6
Q ss_pred EEEEeecCchhhHHHHHHHHHHHhhcCCCe-eEEEEccCC-C------CCCCCCCCcHHHHHHHHhccCCeEEEE-----
Q 018839 215 KIILSGSFNPLHDGHLKLLEVATRICGNGY-PCFELSAVN-A------DKPPLSVSQIKDRVKQFEKVGMTVIIS----- 281 (350)
Q Consensus 215 i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~-v~~~~s~~n-~------~K~~~~~~~~~~R~~ml~~~g~~v~is----- 281 (350)
.++.-|.||-+|.||..++++|.+..+... ....+|..+ | .+......+.++|.++++..|....+-
T Consensus 15 ~vv~iG~FDGvH~GHq~Ll~~a~~~a~~~~~~~~vitFd~~p~~~~~~~~~~~~l~t~eeR~~~l~~~gVD~~~~~~F~~ 94 (305)
T PRK05627 15 CVLTIGNFDGVHRGHQALLARAREIARERGLPSVVMTFEPHPREVFAPDKAPARLTPLRDKAELLAELGVDYVLVLPFDE 94 (305)
T ss_pred EEEEEeeCCcCCHHHHHHHHHHHHHHHhcCCCEEEEEecCCHHHHcCCCCCCcCCCCHHHHHHHHHHcCCCEEEEecCCH
Confidence 678999999999999999999998754221 122233222 1 222345778999999999988755442
Q ss_pred -----chHhHHH--HHHhCCCcEEEEchhh
Q 018839 282 -----NQPYFYK--KAEFFPGSAFVIGADT 304 (350)
Q Consensus 282 -----~~~~f~~--l~~~~p~~~fviG~D~ 304 (350)
+...|.+ +.+.+.--.+|+|.|.
T Consensus 95 ~~~~ls~e~Fi~~~l~~~l~~~~iVvG~Df 124 (305)
T PRK05627 95 EFAKLSAEEFIEDLLVKGLNAKHVVVGFDF 124 (305)
T ss_pred HHhcCCHHHHHHHHHHhccCCCEEEECCCC
Confidence 3455654 2333444679999997
No 65
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=96.89 E-value=0.0021 Score=57.22 Aligned_cols=106 Identities=25% Similarity=0.359 Sum_probs=66.0
Q ss_pred CchhhHHHHHHHHHHHhhcCCCeeE-EEEccCCCCCCCCCCCcHHHHHHHHhc-----------cCCeEEEEc--hHhHH
Q 018839 222 FNPLHDGHLKLLEVATRICGNGYPC-FELSAVNADKPPLSVSQIKDRVKQFEK-----------VGMTVIISN--QPYFY 287 (350)
Q Consensus 222 FnP~H~gHl~m~~~a~~~~~~d~v~-~~~s~~n~~K~~~~~~~~~~R~~ml~~-----------~g~~v~is~--~~~f~ 287 (350)
=||.|+||..|+++|.++++ .++ |+.+ ...+..+|.+|.+|++. .|..|+||. +|.|.
T Consensus 8 aNPFT~GH~yLiE~Aa~~~d--~l~vFVV~------eD~S~Fpf~~R~~LVk~G~~~L~NV~V~~~g~YiIS~aTFPsYF 79 (182)
T PF08218_consen 8 ANPFTLGHRYLIEQAAKECD--WLHVFVVS------EDRSLFPFADRYELVKEGTADLPNVTVHPGGDYIISSATFPSYF 79 (182)
T ss_pred CCCCccHHHHHHHHHHHhCC--EEEEEEEc------cccCcCCHHHHHHHHHHHhCcCCCEEEEcCCCeeeecccChhhh
Confidence 49999999999999999864 453 4443 23467899999999984 345677776 56554
Q ss_pred HHH-----Hh--------C-----CCc---EEEEchhhhhhcCCCCccCCCcccHHHhhccCCCCCeeEEEEecCCC
Q 018839 288 KKA-----EF--------F-----PGS---AFVIGADTAARLIDPKYYDGDPGKMVEVLSGCKRTGCTFIVAGRNID 343 (350)
Q Consensus 288 ~l~-----~~--------~-----p~~---~fviG~D~l~~l~d~kwy~~~~~~ile~~~~l~~~~~~~~V~~R~~~ 343 (350)
-|. +. | |.+ .=-+|..-+-.. .+-|+. .|.+ .|...|+.+.+.||...
T Consensus 80 lK~~~~~~~~~~~lD~~iF~~~IAp~L~It~RfVG~EP~~~v--T~~YN~---~M~~---~Lp~~gi~v~ei~R~~~ 148 (182)
T PF08218_consen 80 LKDEDDVIKAQAELDATIFKKYIAPALGITKRFVGEEPFSPV--TRIYNE---AMKE---ILPPYGIEVVEIPRKEI 148 (182)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhhHhcCcccceeCCCCCCHH--HHHHHH---HHHH---hccccCCEEEEEecccC
Confidence 211 00 1 111 113454443443 333432 3444 46667899999999843
No 66
>PRK07143 hypothetical protein; Provisional
Probab=96.76 E-value=0.0095 Score=57.11 Aligned_cols=90 Identities=23% Similarity=0.331 Sum_probs=59.2
Q ss_pred CCceEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCC---C-CCCCCcHHHHHHHHhccCCeEEE-E----
Q 018839 211 NEERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADK---P-PLSVSQIKDRVKQFEKVGMTVII-S---- 281 (350)
Q Consensus 211 ~~k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K---~-~~~~~~~~~R~~ml~~~g~~v~i-s---- 281 (350)
.+++..+--|.||-+|.||..|++.+.++. +. ...++..+|.. + ...+.+.++|.++++..|..+.+ -
T Consensus 13 ~~~~~vvaiG~FDGvH~GHq~Ll~~a~~~~--~~-~vV~tF~~P~~~~~~~~~~l~~~~er~~~l~~~Gvd~~~~~~F~~ 89 (279)
T PRK07143 13 KFEKPTFVLGGFESFHLGHLELFKKAKESN--DE-IVIVIFKNPENLPKNTNKKFSDLNSRLQTLANLGFKNIILLDFNE 89 (279)
T ss_pred CCCCeEEEEccCCcCCHHHHHHHHHHHHCC--Cc-EEEEEeCChHHhcccCcccCCCHHHHHHHHHHCCCCEEEEeCCCH
Confidence 455678888999999999999999999742 22 22223223322 1 12367889999999998875433 2
Q ss_pred -----chHhHHH-HHHhCCCcEEEEchhh
Q 018839 282 -----NQPYFYK-KAEFFPGSAFVIGADT 304 (350)
Q Consensus 282 -----~~~~f~~-l~~~~p~~~fviG~D~ 304 (350)
+...|.+ +.. +.--.+|+|.|.
T Consensus 90 ~~a~ls~e~Fi~~ll~-l~~~~iVvG~Df 117 (279)
T PRK07143 90 ELQNLSGNDFIEKLTK-NQVSFFVVGKDF 117 (279)
T ss_pred HHhCCCHHHHHHHHHh-cCCCEEEECCCc
Confidence 3455654 233 322579999996
No 67
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=96.66 E-value=0.0098 Score=57.28 Aligned_cols=87 Identities=21% Similarity=0.315 Sum_probs=55.2
Q ss_pred EEeecCchhhHHHHHHHHHHHhhcC---CCeeEE--EEccCCCC---CCCCCCCcHHHHHHHHhccCCeEEE-Ec-----
Q 018839 217 ILSGSFNPLHDGHLKLLEVATRICG---NGYPCF--ELSAVNAD---KPPLSVSQIKDRVKQFEKVGMTVII-SN----- 282 (350)
Q Consensus 217 i~~GSFnP~H~gHl~m~~~a~~~~~---~d~v~~--~~s~~n~~---K~~~~~~~~~~R~~ml~~~g~~v~i-s~----- 282 (350)
+--|.||.+|.||..+++.+.+... ...+++ .|.+.... +... ..+.++|.++++..|..+.+ -.
T Consensus 2 vaiG~FDGvH~GHq~Li~~~~~~a~~~~~~~~V~tF~phP~~~~~~~~~~~-l~~~~~k~~~l~~~Gvd~~~~~~F~~~~ 80 (288)
T TIGR00083 2 LAIGYFDGLHLGHQALLQELKQIAEEKGLPPAVLLFEPHPSEQFNWLTAPA-LTPLEDKARQLQIKGVEQLLVVVFDEEF 80 (288)
T ss_pred EEEEeCCccCHHHHHHHHHHHHHHHHhCCCEEEEEeCCChHHHhCccCCCC-CCCHHHHHHHHHHcCCCEEEEeCCCHHH
Confidence 4569999999999999999987532 223333 33222222 2223 77889999999998875433 11
Q ss_pred ----hHhHHH--HHHhCCCcEEEEchhh
Q 018839 283 ----QPYFYK--KAEFFPGSAFVIGADT 304 (350)
Q Consensus 283 ----~~~f~~--l~~~~p~~~fviG~D~ 304 (350)
...|.+ +.+.+.--.+++|.|.
T Consensus 81 a~ls~e~Fi~~~l~~~l~~~~ivvG~Df 108 (288)
T TIGR00083 81 ANLSALQFIDQLIVKHLHVKFLVVGDDF 108 (288)
T ss_pred HcCCHHHHHHHHHHhccCCcEEEECCCc
Confidence 334543 2233433679999996
No 68
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=96.56 E-value=0.0034 Score=61.95 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=50.5
Q ss_pred ecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCCCCCCCCcHHHHHHHHhccCC
Q 018839 220 GSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFEKVGM 276 (350)
Q Consensus 220 GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K~~~~~~~~~~R~~ml~~~g~ 276 (350)
--|||+|+||..+++.|.++++.|.++..+|.+-...+.....+...|.+|.-..|.
T Consensus 8 ~eyNPfHnGH~y~i~~Ar~~~~~d~~i~~msgdf~qRgepai~~k~~r~~~aL~~g~ 64 (358)
T COG1323 8 AEYNPFHNGHQYHINKAREEFKGDEIIAVMSGDFTQRGEPAIGHKWERKKMALEGGA 64 (358)
T ss_pred eecCcccccHHHHHHHHHHhccCCceEEeeecchhhcCCCccccHHHHHhhhhhcCc
Confidence 359999999999999999999999999999998888888788899999999876553
No 69
>PLN02413 choline-phosphate cytidylyltransferase
Probab=96.32 E-value=0.016 Score=55.31 Aligned_cols=65 Identities=18% Similarity=0.258 Sum_probs=51.0
Q ss_pred CCceEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCC---CCCCCCCCCcHHHHHHHHhccCC
Q 018839 211 NEERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVN---ADKPPLSVSQIKDRVKQFEKVGM 276 (350)
Q Consensus 211 ~~k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n---~~K~~~~~~~~~~R~~ml~~~g~ 276 (350)
.+..+++..|.||=+|.||+.++++|.++++.+.+++-++.+. -.|+ .+..+..+|..++.+..+
T Consensus 25 ~r~~rVyvdG~FDLfH~GHir~L~qAK~lg~~d~LIVGV~sDe~v~~~KG-rPIm~~~ER~e~V~acKy 92 (294)
T PLN02413 25 DRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKG-KTVMTEDERYESLRHCKW 92 (294)
T ss_pred CCceEEEEeCchhhCCHHHHHHHHHHHHhCCCCEEEEEecccHHHHhcCC-CCCCCHHHHHHHHHhccc
Confidence 4556788899999999999999999999987677666665442 2343 467889999999987654
No 70
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=95.89 E-value=0.035 Score=56.62 Aligned_cols=113 Identities=19% Similarity=0.255 Sum_probs=71.6
Q ss_pred CceEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCC---CCCC-CCCCCcHHHHHHHHhccC-CeEEEE-c---
Q 018839 212 EERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVN---ADKP-PLSVSQIKDRVKQFEKVG-MTVIIS-N--- 282 (350)
Q Consensus 212 ~k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n---~~K~-~~~~~~~~~R~~ml~~~g-~~v~is-~--- 282 (350)
.++|.+..|.||.+|.||+.++++|.+..+ .++..++... ..|+ ..+..+.++|.++++..+ ....+. +
T Consensus 339 ~~~iv~~~G~fD~~H~GH~~~l~~a~~~~~--~l~v~v~~d~~~~~~k~~~~pi~~~~~R~~~~~~~~~vd~v~~~~~~~ 416 (473)
T PRK11316 339 GEKIVMTNGCFDILHAGHVSYLANARKLGD--RLIVAVNSDASVKRLKGEGRPVNPLEQRMAVLAALEAVDWVVPFEEDT 416 (473)
T ss_pred CCeEEEEecccccCCHHHHHHHHHHHHhCC--eeEEEEeCchhHHHhCCCCCCCCCHHHHHHHHHhcCcCCEEEeCCCCC
Confidence 468889999999999999999999999854 3555554432 1243 256889999999998766 333332 2
Q ss_pred hHhHHHHHHhCCCcEEEEchhhhhhcCCCCccCCCcccHHHhhccCCCCCeeEEEEecCC
Q 018839 283 QPYFYKKAEFFPGSAFVIGADTAARLIDPKYYDGDPGKMVEVLSGCKRTGCTFIVAGRNI 342 (350)
Q Consensus 283 ~~~f~~l~~~~p~~~fviG~D~l~~l~d~kwy~~~~~~ile~~~~l~~~~~~~~V~~R~~ 342 (350)
...| +.++.|+ .++.|.|.-.+ + .... .. +.+.++++.++||..
T Consensus 417 ~~~~--~~~~~~d-~vv~G~d~~~~---~-~~~~---~~------~~~~~~~~~~~~~~~ 460 (473)
T PRK11316 417 PQRL--IAEILPD-LLVKGGDYKPE---E-IAGS---KE------VWANGGEVKVLNFED 460 (473)
T ss_pred HHHH--HHHhCCC-EEEECCCCCCC---c-cccH---HH------HHHcCCEEEEEcCCC
Confidence 2233 3344566 57788776211 1 1111 11 223467899999864
No 71
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=95.68 E-value=0.064 Score=54.11 Aligned_cols=92 Identities=18% Similarity=0.283 Sum_probs=61.0
Q ss_pred CCceEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCC---CCCC-CCCCCcHHHHHHHHhccCC--eEEEEch-
Q 018839 211 NEERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVN---ADKP-PLSVSQIKDRVKQFEKVGM--TVIISNQ- 283 (350)
Q Consensus 211 ~~k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n---~~K~-~~~~~~~~~R~~ml~~~g~--~v~is~~- 283 (350)
+.++|+...|.||-+|.||+.++++|.+.. |.+++-+..+. -.|+ ..+..+..+|+.++.+..+ .|.+...
T Consensus 249 ~~~~iVyv~G~FDlfH~GHi~~L~~Ak~lG--d~LIVGV~sD~~v~~~KG~~~Pi~~~~ER~~~v~ack~VD~VVi~ap~ 326 (418)
T PLN02406 249 PDARIVYIDGAFDLFHAGHVEILRLARALG--DFLLVGIHTDQTVSAHRGAHRPIMNLHERSLSVLACRYVDEVIIGAPW 326 (418)
T ss_pred CCCeEEEECCeeccCCHHHHHHHHHHHHhC--CEEEEEEeccHHHHHhcCCCCCCCCHHHHHHHHhccCcccEEEeCCCC
Confidence 567899999999999999999999999863 45555555442 2354 3577899999999987654 3444221
Q ss_pred HhHHHHHHhCCCcEEEEchhh
Q 018839 284 PYFYKKAEFFPGSAFVIGADT 304 (350)
Q Consensus 284 ~~f~~l~~~~p~~~fviG~D~ 304 (350)
..-.++-+.+.--.++.|.|.
T Consensus 327 ~~~~~~i~~~~~d~vvhG~~~ 347 (418)
T PLN02406 327 EVSKDMITTFNISLVVHGTVA 347 (418)
T ss_pred CCCHHHHHHhCCCEEEECCcC
Confidence 111112233433557788653
No 72
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=95.62 E-value=0.051 Score=52.02 Aligned_cols=69 Identities=26% Similarity=0.362 Sum_probs=51.2
Q ss_pred CceEEEEeecCchhhHHHHHHHHHHHhhcCCCee-EEEEccCCCCCCCCCCCcHHHHHHHHhc-----------cCCeEE
Q 018839 212 EERKIILSGSFNPLHDGHLKLLEVATRICGNGYP-CFELSAVNADKPPLSVSQIKDRVKQFEK-----------VGMTVI 279 (350)
Q Consensus 212 ~k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v-~~~~s~~n~~K~~~~~~~~~~R~~ml~~-----------~g~~v~ 279 (350)
.|+|+-.-=--||.|+||..|+++|.++++ -+ +|+.+ ...+..++.+|.+|++. .|..|+
T Consensus 144 gkkIgaIVMNANPFTLGH~YLVEqAaaqcD--wlHLFvV~------eD~S~f~y~~R~~Lv~~G~~~l~Nvt~HsgsdYi 215 (352)
T COG3053 144 GKKIGAIVMNANPFTLGHRYLVEQAAAQCD--WLHLFVVK------EDSSLFPYEDRLDLVKKGTADLPNVTVHSGSDYI 215 (352)
T ss_pred CCeeEEEEEeCCCccchhHHHHHHHHhhCC--EEEEEEEe------cccccCCHHHHHHHHHHhhccCCceEEecCCCeE
Confidence 567887777889999999999999999964 34 34443 23356889999999984 355677
Q ss_pred EEc--hHhHHH
Q 018839 280 ISN--QPYFYK 288 (350)
Q Consensus 280 is~--~~~f~~ 288 (350)
||. +|-|..
T Consensus 216 ISrATFP~YFi 226 (352)
T COG3053 216 ISRATFPAYFI 226 (352)
T ss_pred EEecccchhhh
Confidence 775 565553
No 73
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=95.16 E-value=0.11 Score=50.32 Aligned_cols=92 Identities=21% Similarity=0.365 Sum_probs=57.9
Q ss_pred ceEEEEeecCchhhHHHHHHHHHHHhhcCCC-eeEEEEccCC----CCCC---CCCCCcHHHHHHHHhccCCeEEE-E--
Q 018839 213 ERKIILSGSFNPLHDGHLKLLEVATRICGNG-YPCFELSAVN----ADKP---PLSVSQIKDRVKQFEKVGMTVII-S-- 281 (350)
Q Consensus 213 k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d-~v~~~~s~~n----~~K~---~~~~~~~~~R~~ml~~~g~~v~i-s-- 281 (350)
....+.=|.||=+|.||..++++|.+.-..+ ...++++-.+ ..++ ..-+.+..+|+++++..|..+.+ -
T Consensus 15 ~~~~l~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~~~gvd~~~v~~F 94 (304)
T COG0196 15 RGCVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLLAGYGVDALVVLDF 94 (304)
T ss_pred CCcEEEEEcCCccchhHHHHHHHHHHHHHHhCCceEEEEecCCCHHHcCCCCCccccCCHHHHHHHHHhcCCcEEEEEeC
Confidence 4567888999999999999999999654332 2233444332 1222 22367899999999988854332 1
Q ss_pred -------chHhHHH-HHHhCCCcEEEEchhh
Q 018839 282 -------NQPYFYK-KAEFFPGSAFVIGADT 304 (350)
Q Consensus 282 -------~~~~f~~-l~~~~p~~~fviG~D~ 304 (350)
+...|.+ +.+...--.+|+|.|-
T Consensus 95 ~~~fa~ls~~~Fv~~lv~~l~~k~ivvG~DF 125 (304)
T COG0196 95 DLEFANLSAEEFVELLVEKLNVKHIVVGFDF 125 (304)
T ss_pred CHhHhhCCHHHHHHHHHhccCCcEEEEeccc
Confidence 2344554 2222222568999885
No 74
>cd00517 ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be
Probab=94.84 E-value=0.15 Score=50.52 Aligned_cols=56 Identities=21% Similarity=0.221 Sum_probs=38.5
Q ss_pred eEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCCCCCCCCcHHHHHHHHhc
Q 018839 214 RKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFEK 273 (350)
Q Consensus 214 ~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K~~~~~~~~~~R~~ml~~ 273 (350)
+|.-| =+-||+|.+|..|.+.|++..+.+-+++-|... ..|+ +-.+.+-|++..+.
T Consensus 158 ~Vvaf-qtrnP~HraHe~l~~~a~~~~~~~~lll~plvG-~~k~--~d~~~~~r~~~~~~ 213 (353)
T cd00517 158 RVVAF-QTRNPMHRAHEELMKRAAEKLLNDGLLLHPLVG-WTKP--GDVPDEVRMRAYEA 213 (353)
T ss_pred eEEEe-ecCCCCchhhHHHHHHHHHHcCCCcEEEEeccC-CCCC--CCCCHHHHHHHHHH
Confidence 44443 568999999999999999987534455555443 3343 34567888887653
No 75
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2.7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....
Probab=94.71 E-value=0.18 Score=46.60 Aligned_cols=56 Identities=23% Similarity=0.208 Sum_probs=36.9
Q ss_pred CceEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCCCCCCCCcHHHHHHHHh
Q 018839 212 EERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFE 272 (350)
Q Consensus 212 ~k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K~~~~~~~~~~R~~ml~ 272 (350)
.++|+-|-. -||+|.+|-.|.+.|++.. .+.+++.|-... .|+ +..+..-|++-.+
T Consensus 20 w~~Vvafqt-rnPlHraHe~l~~~a~e~~-~~~lll~plvG~-~k~--~d~~~~~r~~~~~ 75 (215)
T PF01747_consen 20 WRRVVAFQT-RNPLHRAHEYLMRRALEKA-GDGLLLHPLVGP-TKP--GDIPYEVRVRCYE 75 (215)
T ss_dssp -SSEEEEEE-SS---HHHHHHHHHHHHHH-TSEEEEEEBESB--ST--TSCCHHHHHHHHH
T ss_pred CCeEEEEEe-CCCCCHHHHHHHHHHHHHh-cCcEEEEeccCC-CCc--CCCCHHHHHHHHH
Confidence 346666666 9999999999999999998 456666665443 333 3456888888764
No 76
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=94.26 E-value=0.23 Score=49.94 Aligned_cols=55 Identities=18% Similarity=0.132 Sum_probs=36.0
Q ss_pred ceEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCCCCCCCCcHHHHHHHHhc
Q 018839 213 ERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFEK 273 (350)
Q Consensus 213 k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K~~~~~~~~~~R~~ml~~ 273 (350)
++|+- -=+-||+|.+|..|.+.|++.. |-+++-|-.. ..|+ +-.+..-|++..+.
T Consensus 187 ~~Vva-fqTrnP~HraHe~l~~~a~e~~--d~lll~plvG-~~k~--~di~~~~r~~~~~~ 241 (391)
T PRK04149 187 KTVVA-FQTRNPPHRAHEYLQKCALEIV--DGLLLNPLVG-ETKS--GDIPAEVRMEAYEA 241 (391)
T ss_pred CeEEE-eecCCCCchHHHHHHHHHHHhc--CeEEEecCcC-CCCC--CCCCHHHHHHHHHH
Confidence 34544 3458999999999999999975 3333324333 3333 34567888887653
No 77
>KOG3351 consensus Predicted nucleotidyltransferase [General function prediction only]
Probab=92.67 E-value=0.082 Score=49.43 Aligned_cols=61 Identities=26% Similarity=0.391 Sum_probs=48.1
Q ss_pred CCceEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCCCC--CC-CCcHHHHHHHHh
Q 018839 211 NEERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPP--LS-VSQIKDRVKQFE 272 (350)
Q Consensus 211 ~~k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K~~--~~-~~~~~~R~~ml~ 272 (350)
.+..+.++||+||=+|+||--++..|...- .|++++-++.....|.+ ++ ..+++.|++-+.
T Consensus 140 ~~~~~~alGGTFDrLH~gHKvLLs~aa~la-~~~lVvGV~d~elL~kK~~~Eliepie~R~~~V~ 203 (293)
T KOG3351|consen 140 NKFMVVALGGTFDRLHDGHKVLLSVAAELA-SDRLVVGVTDDELLKKKVLKELIEPIEERKEHVS 203 (293)
T ss_pred hcceeEEeccchhhhccchHHHHHHHHHHh-hceEEEEecChHHHHHhHHHHHhhhHHHHHHHHH
Confidence 566789999999999999999999988754 56888888888776654 11 457888888764
No 78
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=92.53 E-value=0.75 Score=45.56 Aligned_cols=57 Identities=21% Similarity=0.183 Sum_probs=38.7
Q ss_pred CCceEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCCCCCCCCcHHHHHHHHh
Q 018839 211 NEERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFE 272 (350)
Q Consensus 211 ~~k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K~~~~~~~~~~R~~ml~ 272 (350)
...++.|---|+||+|.||-.|.+.|++..+. +++ -...-..|. +-.+.+-|++-.+
T Consensus 181 kgwk~vvafQTRNp~HraHEyl~K~Al~~vdg--llv-~plVG~tk~--gD~~~e~rm~~ye 237 (397)
T COG2046 181 KGWKTVVAFQTRNPPHRAHEYLQKRALEKVDG--LLV-HPLVGATKP--GDIPDEVRMEYYE 237 (397)
T ss_pred cCCeEEEEEecCCCchHHHHHHHHHHHHhcCc--EEE-EeeeccccC--CCchHHHHHHHHH
Confidence 45567777789999999999999999998543 333 323334443 2355677777654
No 79
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=92.29 E-value=0.67 Score=48.87 Aligned_cols=105 Identities=24% Similarity=0.350 Sum_probs=61.9
Q ss_pred ceEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCCCCCCCCcHHHHHHHHhccCCeEEEEchHhHHHHHHh
Q 018839 213 ERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFEKVGMTVIISNQPYFYKKAEF 292 (350)
Q Consensus 213 k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K~~~~~~~~~~R~~ml~~~g~~v~is~~~~f~~l~~~ 292 (350)
++|.- -=+-||+|.+|..|++.|++..+. .+++-|... ..|+ +-.+..-|++..+. +. +.
T Consensus 187 ~~v~a-fqtrnP~Hr~He~l~~~a~~~~d~-~lll~p~~G-~~k~--~d~~~~~r~~~~~~------------~~---~~ 246 (568)
T PRK05537 187 RRVVA-FQTRNPLHRAHEELTKRAAREVGA-NLLIHPVVG-MTKP--GDIDHFTRVRCYEA------------LL---DK 246 (568)
T ss_pred CcEEE-EecCCCCcHHHHHHHHHHHHhcCC-eEEEecCCC-CCCC--CCCCHHHHHHHHHH------------HH---Hh
Confidence 34444 446899999999999999998643 333333222 2332 34668888887643 22 22
Q ss_pred CCC-cEEEEchhhhhhcCCCCccCCCcccHHHhhccCCCCCeeEEEEecCCCC
Q 018839 293 FPG-SAFVIGADTAARLIDPKYYDGDPGKMVEVLSGCKRTGCTFIVAGRNIDG 344 (350)
Q Consensus 293 ~p~-~~fviG~D~l~~l~d~kwy~~~~~~ile~~~~l~~~~~~~~V~~R~~~~ 344 (350)
||. -.++....+-.+ |.+-.+.++.++.+ .+.||+.++++|..-|
T Consensus 247 ~p~~~~~l~~~p~~mr------yaGpreai~hAi~r-~N~Gcth~ivGrdhAg 292 (568)
T PRK05537 247 YPPATTLLSLLPLAMR------MAGPREALWHAIIR-RNYGCTHFIVGRDHAG 292 (568)
T ss_pred CCCCcEEEEeccchhc------ccCcHHHHHHHHHH-HhCCCCeEEECCCCCC
Confidence 665 556666666322 23333566665432 3447888888886433
No 80
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=90.38 E-value=0.91 Score=43.55 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHHhhcCCCeeEEEEccCCCC----CC-CCCCCcHHHHHHHHhccCCeEE
Q 018839 225 LHDGHLKLLEVATRICGNGYPCFELSAVNAD----KP-PLSVSQIKDRVKQFEKVGMTVI 279 (350)
Q Consensus 225 ~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~----K~-~~~~~~~~~R~~ml~~~g~~v~ 279 (350)
+|.||+.|+++|.+.. +.+++-+-.++.. .. ..-+.+.++++++|+..|..+.
T Consensus 33 LH~GH~~LI~~a~~~a--~~vVvtf~~nP~qf~~~ed~~~y~~t~e~d~~ll~~~GvD~v 90 (277)
T cd00560 33 LHEGHLSLVRRARAEN--DVVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEEAGVDLL 90 (277)
T ss_pred ccHHHHHHHHHHHHhC--CEEEEEecCChhhcCCcccccccCCCHHHHHHHHHHCCCCEE
Confidence 9999999999999975 4444444333211 11 1225679999999999998776
No 81
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=89.59 E-value=1.6 Score=41.97 Aligned_cols=64 Identities=17% Similarity=0.290 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHhhcCCCeeEEEEccCCC--CC---CCCCCCcHHHHHHHHhccCCeEEEEchHhHHHHHHhCCC
Q 018839 225 LHDGHLKLLEVATRICGNGYPCFELSAVNA--DK---PPLSVSQIKDRVKQFEKVGMTVIISNQPYFYKKAEFFPG 295 (350)
Q Consensus 225 ~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~--~K---~~~~~~~~~~R~~ml~~~g~~v~is~~~~f~~l~~~~p~ 295 (350)
+|.||..+++.+.+.. +.+++-+..++. .. ...-+.+.++|.++++..|..+.+.- ..++.||+
T Consensus 33 lH~GH~~Li~~a~~~a--~~vVvTf~~~P~qf~~~~~~~~~~~t~e~~~~ll~~~GvD~v~~p-----~~~~myp~ 101 (281)
T PRK00380 33 LHEGHLSLVREARAEA--DIVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEAAGVDLVFAP-----SVEEMYPQ 101 (281)
T ss_pred eeHHHHHHHHHHHHhC--CEEEEeCCCCHHHhCCCccccccCCCHHHHHHHHHHcCCCEEEeC-----CHHHCCCc
Confidence 9999999999999875 334333332211 11 11225679999999999887665543 23466665
No 82
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=88.41 E-value=0.79 Score=44.42 Aligned_cols=60 Identities=25% Similarity=0.458 Sum_probs=44.9
Q ss_pred CCceEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccC---CCCCCC-CCCCcHHHHHHHHh
Q 018839 211 NEERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAV---NADKPP-LSVSQIKDRVKQFE 272 (350)
Q Consensus 211 ~~k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~---n~~K~~-~~~~~~~~R~~ml~ 272 (350)
+..+|....|.||-+|.||++.++.|.++.+ .++.-|... |..|+. -+.-...+|+--+-
T Consensus 196 p~~kvVYvdGaFDLFH~GHl~~Le~ak~lgd--yLIvGI~~D~~vneykgs~~PiMnl~ER~Lsvl 259 (358)
T KOG2803|consen 196 PTDKVVYVDGAFDLFHAGHLDFLEKAKRLGD--YLIVGIHTDQTVNEYKGSNYPIMNLHERVLSVL 259 (358)
T ss_pred CCCcEEEEcCchhhhccchHHHHHHHHhccC--ceEEEeecCcchhhhccCCCccchHHHHHHHHh
Confidence 4468999999999999999999999999854 566666554 445544 35667888875443
No 83
>PLN02660 pantoate--beta-alanine ligase
Probab=85.82 E-value=2.6 Score=40.58 Aligned_cols=55 Identities=16% Similarity=0.323 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHhhcCCCeeEEEEccCCC-CCC----CCCCCcHHHHHHHHhccCCeEEEE
Q 018839 225 LHDGHLKLLEVATRICGNGYPCFELSAVNA-DKP----PLSVSQIKDRVKQFEKVGMTVIIS 281 (350)
Q Consensus 225 ~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~-~K~----~~~~~~~~~R~~ml~~~g~~v~is 281 (350)
+|.||+.|++.|.+..+ .+++-+-.++. ..+ ..-+.+.++++++++..|..+.+.
T Consensus 32 LH~GH~~LI~~a~~~a~--~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~GVD~vf~ 91 (284)
T PLN02660 32 LHEGHLSLVRAARARAD--VVVVSIYVNPGQFAPGEDLDTYPRDFDGDLRKLAALGVDAVFN 91 (284)
T ss_pred hhHHHHHHHHHHHHhCC--EEEEEEeCChHHcCCccccccCCCCHHHHHHHHHHcCCCEEEC
Confidence 99999999999999754 34443333321 111 122567999999999988765543
No 84
>PF06787 UPF0254: Uncharacterised protein family (UPF0254); InterPro: IPR009625 This is a group of proteins of unknown function.
Probab=85.65 E-value=6.2 Score=34.46 Aligned_cols=74 Identities=26% Similarity=0.227 Sum_probs=50.4
Q ss_pred CccccccCceeecChHHHHHHhCCCCC---------CCC----CHHHHHHHHHHHHHHHhhhcCCCCCeEEEEecCcccC
Q 018839 40 GATNTVLEAVVPYSRMSMIQLLGQIPN---------QFC----SQQTAVNMALLAYNRALKLSRPGAPVLGVGFTGALAS 106 (350)
Q Consensus 40 GaS~t~~~~~v~Ys~~~k~~llgv~~~---------g~V----S~e~a~~MA~~a~~~~~~l~~~~~~~~gia~Tg~ag~ 106 (350)
|--.++++.++| +-..-..+|+++|. .+- ..++|.-||++..++. .+|+|||.| |
T Consensus 40 ~~v~V~asmFiP-s~~g~~slL~i~~pePd~~~~~~K~Y~ee~D~~vA~~mA~avk~~~-------~~dI~IgTT--A-- 107 (160)
T PF06787_consen 40 GNVSVVASMFIP-SISGAESLLNIEPPEPDYVIKYIKAYNEENDLEVAKLMAKAVKNKL-------NCDIGIGTT--A-- 107 (160)
T ss_pred CcEEEEEeeccc-cHHHHHHHhCCCCCCcchhhccceeecccccHHHHHHHHHHHHHHh-------CCCeeeecc--c--
Confidence 555666666665 44445578888443 233 4578999999998875 689999998 2
Q ss_pred CCCCCCCcEEEEEEEeCCeeEEEE
Q 018839 107 THPKLGDHRFHLSTRTSDRLWVST 130 (350)
Q Consensus 107 ~~~k~g~g~~~i~i~~~~~~~~~~ 130 (350)
|+|.+=|+|.++.......
T Consensus 108 -----GiGrGaI~I~t~~~~~~~t 126 (160)
T PF06787_consen 108 -----GIGRGAICIVTDKNEYVFT 126 (160)
T ss_pred -----ccCCceEEEEeCCcEEEEe
Confidence 4566677888877754433
No 85
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=85.35 E-value=3 Score=40.18 Aligned_cols=55 Identities=20% Similarity=0.343 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHhhcCCCeeEEEEccCCCC----CC-CCCCCcHHHHHHHHhccCCeEEEE
Q 018839 225 LHDGHLKLLEVATRICGNGYPCFELSAVNAD----KP-PLSVSQIKDRVKQFEKVGMTVIIS 281 (350)
Q Consensus 225 ~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~----K~-~~~~~~~~~R~~ml~~~g~~v~is 281 (350)
+|.||..|+++|.+.. +.+++-+-.++.. .. ..-..+.++++++|+..|..+.+.
T Consensus 33 LH~GH~~LI~~a~~~a--~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~GVD~vf~ 92 (282)
T TIGR00018 33 LHDGHMSLIDRAVAEN--DVVVVSIFVNPMQFGPNEDLEAYPRTLEEDCALLEKLGVDVVFA 92 (282)
T ss_pred ccHHHHHHHHHHHHhC--CeEEEEecCChHHhCCccccccCCCCHHHHHHHHHHcCCCEEEC
Confidence 9999999999999975 3444444333211 11 122568899999999988766543
No 86
>COG4016 Uncharacterized protein conserved in archaea [Function unknown]
Probab=81.94 E-value=4.5 Score=34.62 Aligned_cols=67 Identities=22% Similarity=0.191 Sum_probs=41.6
Q ss_pred ccccCceeecChHHHHHHhCCCCC---------CCCC----HHHHHHHHHHHHHHHhhhcCCCCCeEEEEecCcccCCCC
Q 018839 43 NTVLEAVVPYSRMSMIQLLGQIPN---------QFCS----QQTAVNMALLAYNRALKLSRPGAPVLGVGFTGALASTHP 109 (350)
Q Consensus 43 ~t~~~~~v~Ys~~~k~~llgv~~~---------g~VS----~e~a~~MA~~a~~~~~~l~~~~~~~~gia~Tg~ag~~~~ 109 (350)
.+++.-++|-=.. -..+|+.+|. .+-| +++|.-||++.+++. .+|+|||.|.
T Consensus 44 ~vvaa~FiPtisG-vrslL~i~pPEPd~~~~~aKaY~EE~D~~VA~mMAr~vre~t-------~adigIGtTA------- 108 (165)
T COG4016 44 RVVAAMFIPTISG-VRSLLDIKPPEPDFNYKYAKAYSEEKDLEVAKMMARGVREKT-------NADIGIGTTA------- 108 (165)
T ss_pred EEEEEeecchhHh-HHHHhCCCCCCCCcchhhhhhhhhhhhHHHHHHHHHHHHHHh-------CCCccccccc-------
Confidence 3444444442222 2467887443 3444 468999999999985 6899999982
Q ss_pred CCCCcEEEEEEEeCCee
Q 018839 110 KLGDHRFHLSTRTSDRL 126 (350)
Q Consensus 110 k~g~g~~~i~i~~~~~~ 126 (350)
|.|++-|++-+.+..
T Consensus 109 --GiGRGaIci~~~n~~ 123 (165)
T COG4016 109 --GIGRGAICILTDNNR 123 (165)
T ss_pred --ccCCceEEEecCCce
Confidence 344555666555543
No 87
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=80.20 E-value=3.9 Score=39.74 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=42.2
Q ss_pred EEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccC---CCCCCCCCCCcHHHHHHHHhc
Q 018839 215 KIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAV---NADKPPLSVSQIKDRVKQFEK 273 (350)
Q Consensus 215 i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~---n~~K~~~~~~~~~~R~~ml~~ 273 (350)
-+...|-||-+|.||-..+.+|.+. .+++++-+-.. +..|+ .+..+-++|.+|.+.
T Consensus 10 rVw~DGCfDm~HyGHanaLrQAkal--GdkLivGVHsDeeI~~nKG-pPV~t~eERy~~v~~ 68 (358)
T KOG2803|consen 10 RVWADGCFDMVHYGHANALRQAKAL--GDKLIVGVHSDEEITLNKG-PPVFTDEERYEMVKA 68 (358)
T ss_pred eEEeccchhhhhhhhhHHHHHHHHh--CCeEEEEecchHHHHhcCC-CCcccHHHHHHHHhh
Confidence 3789999999999999999999975 34555544332 23444 567889999999975
No 88
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=68.70 E-value=25 Score=35.60 Aligned_cols=61 Identities=18% Similarity=0.293 Sum_probs=46.0
Q ss_pred ceEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCC---CCC-CCCCCcHHHHHHHHhccC
Q 018839 213 ERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNA---DKP-PLSVSQIKDRVKQFEKVG 275 (350)
Q Consensus 213 k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~---~K~-~~~~~~~~~R~~ml~~~g 275 (350)
++|+.--|-||=+|.||...+++|.++. |..++-+..+.- .|+ ..+..+-++|+..|....
T Consensus 332 ~~vvfTNGcFDIlH~GHvsyL~~Ar~lg--d~Livg~NsDaSvkrLKG~~RPin~~~~Ra~vLa~L~ 396 (467)
T COG2870 332 KKVVFTNGCFDILHAGHVTYLAQARALG--DRLIVGVNSDASVKRLKGESRPINSEEDRAAVLAALE 396 (467)
T ss_pred CeEEEecchhhhccccHHHHHHHHHhhC--CeEEEEeccchhhhhhcCCCCCCCcHHHHHHHHhhcc
Confidence 3488889999999999999999999985 445555444321 243 367788999999997644
No 89
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=64.94 E-value=8.5 Score=38.42 Aligned_cols=49 Identities=27% Similarity=0.274 Sum_probs=29.6
Q ss_pred CchhhHHHHHHHHHHHhhcCC---CeeEEEE-ccCCCCCCCCCCCcHHHHHHHHh
Q 018839 222 FNPLHDGHLKLLEVATRICGN---GYPCFEL-SAVNADKPPLSVSQIKDRVKQFE 272 (350)
Q Consensus 222 FnP~H~gHl~m~~~a~~~~~~---d~v~~~~-s~~n~~K~~~~~~~~~~R~~ml~ 272 (350)
=||+|+||.-+++...+++-. ...++.+ ...-..|. |-.+...|+.+-.
T Consensus 424 rnpvhnghallm~dt~~~ll~~g~k~pvlllhplggwtkd--ddvpl~~rmkqh~ 476 (627)
T KOG4238|consen 424 RNPVHNGHALLMQDTRRRLLERGYKHPVLLLHPLGGWTKD--DDVPLDWRMKQHA 476 (627)
T ss_pred cCccccchhhHhHhHHHHHHHhcccCceEEEecCCCCccC--CCccchhhhHHHH
Confidence 499999999999888777632 1233333 22233333 2345667777654
No 90
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=60.10 E-value=31 Score=33.12 Aligned_cols=64 Identities=20% Similarity=0.349 Sum_probs=40.2
Q ss_pred ceEEEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCC-C-CCC----CCcHHHHHHHHhccCCeEEE
Q 018839 213 ERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADK-P-PLS----VSQIKDRVKQFEKVGMTVII 280 (350)
Q Consensus 213 k~i~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K-~-~~~----~~~~~~R~~ml~~~g~~v~i 280 (350)
|+|++.+ +-.=+|.||+.|++.|.+. .|.|++-+=. ||.. + .-| +.++++=.++|+..|..+..
T Consensus 22 k~Vg~VP-TMG~LH~GHlsLVr~A~~~--~d~VVVSIFV-NP~QFg~~EDl~~YPR~l~~D~~~le~~gvd~vF 91 (285)
T COG0414 22 KRVGLVP-TMGNLHEGHLSLVRRAKKE--NDVVVVSIFV-NPLQFGPNEDLDRYPRTLERDLELLEKEGVDIVF 91 (285)
T ss_pred CEEEEEc-CCcccchHHHHHHHHHhhc--CCeEEEEEEe-ChhhcCCchhhhhCCCCHHHHHHHHHhcCCcEEe
Confidence 4454433 3344799999999999976 5666555543 4432 1 111 35777888888887765544
No 91
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=58.41 E-value=44 Score=32.19 Aligned_cols=70 Identities=23% Similarity=0.434 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHHhhcCCCeeEEEEccCCCCC--CCCC----CCcHHHHHHHHhccCCeEEEEchHhHHHHHHhCCC---
Q 018839 225 LHDGHLKLLEVATRICGNGYPCFELSAVNADK--PPLS----VSQIKDRVKQFEKVGMTVIISNQPYFYKKAEFFPG--- 295 (350)
Q Consensus 225 ~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K--~~~~----~~~~~~R~~ml~~~g~~v~is~~~~f~~l~~~~p~--- 295 (350)
+|.||+.|++.|.+.. |.+++-+= .||.. +.-| +.+++.=+++|+..|..+...=- -.+.||.
T Consensus 33 LHeGHlsLi~~A~~~~--d~vVVSIF-VNP~QF~~~eD~~~YPR~~e~D~~ll~~~gvD~vF~Ps-----~~emYP~~~~ 104 (280)
T PF02569_consen 33 LHEGHLSLIRRARAEN--DVVVVSIF-VNPTQFGPNEDFDKYPRTLERDLELLEKAGVDAVFAPS-----VEEMYPEGFS 104 (280)
T ss_dssp --HHHHHHHHHHHHHS--SEEEEEE----GGGSSTTSHTTTS---HHHHHHHHHHTT-SEEE--------HHHHSTTTST
T ss_pred hhHHHHHHHHHHHhCC--CEEEEEEC-cCcccCCCcchhhhCCCChHHHHHHHhccCCCEEEcCC-----CCccCCCCCc
Confidence 5999999999999874 44544332 23321 1111 34677778888888876644322 2266775
Q ss_pred cEEEEch
Q 018839 296 SAFVIGA 302 (350)
Q Consensus 296 ~~fviG~ 302 (350)
..+.++.
T Consensus 105 t~v~~~~ 111 (280)
T PF02569_consen 105 TYVSVGP 111 (280)
T ss_dssp CEEEEES
T ss_pred eEEEcCc
Confidence 3444444
No 92
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=52.89 E-value=52 Score=34.46 Aligned_cols=53 Identities=25% Similarity=0.333 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHHhhcCCCeeEEEEccCCCCC--CCCC----CCcHHHHHHHHhccCCeEEE
Q 018839 225 LHDGHLKLLEVATRICGNGYPCFELSAVNADK--PPLS----VSQIKDRVKQFEKVGMTVII 280 (350)
Q Consensus 225 ~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K--~~~~----~~~~~~R~~ml~~~g~~v~i 280 (350)
+|.||+.|+++|.+.. |.|++-+= .||.. +.-| +.++++=+++|+..|..+.+
T Consensus 31 LH~GHlsLi~~A~~~~--d~vVvSIF-VNP~QF~~~eD~~~YPr~~~~D~~~l~~~gvd~vf 89 (512)
T PRK13477 31 LHQGHLSLIRRARQEN--DVVLVSIF-VNPLQFGPNEDLERYPRTLEADRELCESAGVDAIF 89 (512)
T ss_pred hhHHHHHHHHHHHHhC--CEEEEEEc-cCcccCCCchhhhhCCCCHHHHHHHHHhcCCCEEE
Confidence 7999999999999974 55544442 34332 1111 35778888889888876554
No 93
>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]
Probab=50.14 E-value=26 Score=34.02 Aligned_cols=57 Identities=21% Similarity=0.313 Sum_probs=41.6
Q ss_pred EEEeecCchhhHHHHHHHHHHHhhcCCCeeEEEEccCC---CCCCCCCCCcHHHHHHHHhc
Q 018839 216 IILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVN---ADKPPLSVSQIKDRVKQFEK 273 (350)
Q Consensus 216 ~i~~GSFnP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n---~~K~~~~~~~~~~R~~ml~~ 273 (350)
..-.|-||-+|.||..-+++|.+.|+.-.+++-.+... -.|+ ...-+-.+|.+-++.
T Consensus 66 VYADGIyDLFH~GHarqL~QaK~~FPNvyLiVGvc~De~Thk~KG-~TVm~e~ERyE~lrH 125 (348)
T KOG2804|consen 66 VYADGIYDLFHYGHARQLEQAKKLFPNVYLIVGVCSDELTHKFKG-RTVMNENERYEALRH 125 (348)
T ss_pred EEccchHHHhhhhHHHHHHHHHHhCCCeEEEEeecCchhhhhccC-ceecChHHHHHHhhh
Confidence 45689999999999999999999998755555555432 2233 345566788887763
No 94
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=38.46 E-value=26 Score=27.29 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=30.0
Q ss_pred EEEeCCeeEEEEEEeCCchhhHHHHHHHHHHHHHHHHHhccCCCc-cccccccc
Q 018839 119 STRTSDRLWVSTVTLSKGLRTREQEDKVSSHLLLKAMASACKVPA-TFNSELTD 171 (350)
Q Consensus 119 ~i~~~~~~~~~~~~l~~~~r~~~~~~~l~~~l~v~~i~~~~~~~~-~~~~~l~~ 171 (350)
|+........+++.+..+ |+..+.+++ =..+++.|++.++++. ++.-.|.|
T Consensus 22 g~~Rs~~~v~I~It~~~g-Rs~e~K~~l-y~~l~~~L~~~~gi~p~Dv~I~l~e 73 (82)
T PF14552_consen 22 GIDRSDDFVIIQITSGAG-RSTEQKKAL-YRALAERLAEKLGIRPEDVMIVLVE 73 (82)
T ss_dssp --TS-TT-EEEEEEECS----HHHHHHH-HHHHHHHHHHHH---GGGEEEEEEE
T ss_pred CCCCCCCEEEEEEEECCC-CCHHHHHHH-HHHHHHHHHHHcCCCHHHEEEEEEE
Confidence 344445568888898877 999999999 7778888899899744 44333433
No 95
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=33.15 E-value=49 Score=28.73 Aligned_cols=77 Identities=12% Similarity=0.116 Sum_probs=54.5
Q ss_pred CCceEEEEeecCchhhHHHHH-HHHHHHhhcCCCeeEEEEccCCCCCCC--CCCCcHHHHHHHHhccCCeEEEEchHhHH
Q 018839 211 NEERKIILSGSFNPLHDGHLK-LLEVATRICGNGYPCFELSAVNADKPP--LSVSQIKDRVKQFEKVGMTVIISNQPYFY 287 (350)
Q Consensus 211 ~~k~i~i~~GSFnP~H~gHl~-m~~~a~~~~~~d~v~~~~s~~n~~K~~--~~~~~~~~R~~ml~~~g~~v~is~~~~f~ 287 (350)
+.-++.++||.++|-+..=.. .+...++++..|..++..+.-+++.+- .+..+..-...|++.....+.+.+..+|-
T Consensus 61 ~~~~vi~~GG~~~~~~~~~~G~~a~~~l~~~~~d~afi~~~gi~~~~G~~~~~~~~a~vk~~~~~~s~~~ill~D~sKf~ 140 (161)
T PF00455_consen 61 PNIEVILLGGEVNPKSLSFVGPIALEALRQFRFDKAFIGADGISEEGGLTTSDEEEAEVKRAMIENSKQVILLADSSKFG 140 (161)
T ss_pred CceEEEEeCCEEEcCCCcEECchHHHHHHhhccceEEecccEecCCCccccchHHHHHHHHHHHHhcCeEEEEeChhhcC
Confidence 356799999999997744333 455667888888888888877775542 33445555566777777888888877765
No 96
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=32.42 E-value=67 Score=30.06 Aligned_cols=75 Identities=12% Similarity=0.142 Sum_probs=54.0
Q ss_pred ceEEEEeecCchhhHHHHHHH-HHHHhhcCCCeeEEEEccCCCCCCC--CCCCcHHHHHHHHhccCCeEEEEchHhHH
Q 018839 213 ERKIILSGSFNPLHDGHLKLL-EVATRICGNGYPCFELSAVNADKPP--LSVSQIKDRVKQFEKVGMTVIISNQPYFY 287 (350)
Q Consensus 213 k~i~i~~GSFnP~H~gHl~m~-~~a~~~~~~d~v~~~~s~~n~~K~~--~~~~~~~~R~~ml~~~g~~v~is~~~~f~ 287 (350)
-++.++||.++|-+....... ...++++..|..++..+.-+++.+- .+..+..-...|++.....+.+.+..+|-
T Consensus 136 ~~villGG~~~~~~~~~~G~~~~~~l~~~~~D~afig~~gi~~~~G~~~~~~~ea~vk~~~~~~a~~~illaD~sKf~ 213 (252)
T PRK10681 136 CRAILCGGEFHASNAIFKPLDFQQTLDNICPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMAMAQKHVLVVDHSKFG 213 (252)
T ss_pred CEEEEECcEEecCcceeeCHHHHHHHHhhCCCEEEEeCceecCCCCcCCCCHHHHHHHHHHHHhhCcEEEEEcccccC
Confidence 468999999999886655543 4677888888887777766665542 23344555556777788889998888875
No 97
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=32.41 E-value=1e+02 Score=21.97 Aligned_cols=34 Identities=21% Similarity=0.423 Sum_probs=28.4
Q ss_pred EEEEeCCchhhHHHHHHHHHHHHHHHHHhccCCCcc
Q 018839 129 STVTLSKGLRTREQEDKVSSHLLLKAMASACKVPAT 164 (350)
Q Consensus 129 ~~~~l~~~~r~~~~~~~l~~~l~v~~i~~~~~~~~~ 164 (350)
+++++..+ |+..|.++| +.-+.+++.++++.|.+
T Consensus 4 i~i~~~~G-rs~EqK~~L-~~~it~a~~~~~~~p~~ 37 (60)
T PRK02289 4 VRIDLFEG-RSQEQKNAL-AREVTEVVSRIAKAPKE 37 (60)
T ss_pred EEEEECCC-CCHHHHHHH-HHHHHHHHHHHhCcCcc
Confidence 56777777 889999998 88899999999998764
No 98
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=31.70 E-value=92 Score=29.19 Aligned_cols=75 Identities=11% Similarity=0.182 Sum_probs=53.0
Q ss_pred ceEEEEeecCchhhHHHH-HHHHHHHhhcCCCeeEEEEccCCCCCCC--CCCCcHHHHHHHHhccCCeEEEEchHhHH
Q 018839 213 ERKIILSGSFNPLHDGHL-KLLEVATRICGNGYPCFELSAVNADKPP--LSVSQIKDRVKQFEKVGMTVIISNQPYFY 287 (350)
Q Consensus 213 k~i~i~~GSFnP~H~gHl-~m~~~a~~~~~~d~v~~~~s~~n~~K~~--~~~~~~~~R~~ml~~~g~~v~is~~~~f~ 287 (350)
-++.++||.++|.+..=. .++...++.+..|..++-.+.-.+..+- .+..+..--..|++.....+.+.+..+|-
T Consensus 135 ~~villGG~~~~~~~~~~G~~a~~~l~~~~~d~afi~~~Gi~~~~G~t~~~~~ea~~k~~~~~~a~~~illaD~sKf~ 212 (252)
T PRK10906 135 FRIILAGGELRSRDGGIIGEATLDFISQFRLDFGILGISGIDSDGSLLEFDYHEVRTKRAIIENSRHVMLVVDHSKFG 212 (252)
T ss_pred CEEEEECCEEecCCCccCCHHHHHHHHhccCCEEEEcCCEECCCCCcCCCCHHHHHHHHHHHHhcCcEEEEEccchhC
Confidence 468899999999985444 3456677888888887777776665543 23344445555777777888888887765
No 99
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=28.67 E-value=95 Score=29.28 Aligned_cols=109 Identities=18% Similarity=0.167 Sum_probs=61.8
Q ss_pred chhhHHHHHHHHHHHhhcCCCeeEEEEccCCCCCCCCCCCcHHHHHHHHhccCCeEEEEchHhHHHHHHhCCCcEEEEch
Q 018839 223 NPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFEKVGMTVIISNQPYFYKKAEFFPGSAFVIGA 302 (350)
Q Consensus 223 nP~H~gHl~m~~~a~~~~~~d~v~~~~s~~n~~K~~~~~~~~~~R~~ml~~~g~~v~is~~~~f~~l~~~~p~~~fviG~ 302 (350)
+|=|-|++-.+..|.+.|+..+.++ ..+. -. . . -+.|.. +.|-.-.+.+..-|..+.+...++.|++|.
T Consensus 11 ep~~~gNIG~vARaMKNfGl~eL~L-V~Pr---~~-~--~-eeA~a~---A~gA~dile~A~i~~tL~eAl~d~~~v~aT 79 (242)
T COG0565 11 EPSHPGNIGSVARAMKNFGLSELRL-VNPR---AG-L--D-EEARAL---AAGARDILENAKIVDTLEEALADCDLVVAT 79 (242)
T ss_pred cCCCCccHHHHHHHHHhCCcceEEE-ECCC---CC-C--C-HHHHHH---hccchhhhccCeeecCHHHHhcCCCEEEEe
Confidence 5889999999999999999887533 2222 11 1 1 112211 113333333433333344445577788888
Q ss_pred hhhhhcCCCCccCCCcccHHHhhccCCCCCeeEEEEecCCCC
Q 018839 303 DTAARLIDPKYYDGDPGKMVEVLSGCKRTGCTFIVAGRNIDG 344 (350)
Q Consensus 303 D~l~~l~d~kwy~~~~~~ile~~~~l~~~~~~~~V~~R~~~~ 344 (350)
-.-.+= ..|+--.+-+....+..-.+.+---+||||+..|
T Consensus 80 tar~r~--~~~~~~~P~e~~~~l~~~~~~~~vAlvFGRE~~G 119 (242)
T COG0565 80 TARSRD--LLRPLRTPREAAPELLEKAKGGKVALVFGRERVG 119 (242)
T ss_pred ccccCc--ccccccCHHHHHHHHHHHhcCCCeEEEECCccCC
Confidence 744444 4555444445555444333334568999999775
No 100
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=26.14 E-value=1.5e+02 Score=20.86 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=29.0
Q ss_pred EEEEEeCCchhhHHHHHHHHHHHHHHHHHhccCCCccc
Q 018839 128 VSTVTLSKGLRTREQEDKVSSHLLLKAMASACKVPATF 165 (350)
Q Consensus 128 ~~~~~l~~~~r~~~~~~~l~~~l~v~~i~~~~~~~~~~ 165 (350)
.+++++..+ |+..|.++| +.-+.+++.+.++.|.+.
T Consensus 3 ~i~I~~~~g-rs~eqk~~l-~~~it~~l~~~~~~p~~~ 38 (62)
T PRK00745 3 TFHIELFEG-RTVEQKRKL-VEEITRVTVETLGCPPES 38 (62)
T ss_pred EEEEEEcCC-CCHHHHHHH-HHHHHHHHHHHcCCChhH
Confidence 356777777 888888888 888899999999987643
No 101
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=25.73 E-value=1.5e+02 Score=20.77 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=27.4
Q ss_pred EEEEEeCCchhhHHHHHHHHHHHHHHHHHhccCCCc
Q 018839 128 VSTVTLSKGLRTREQEDKVSSHLLLKAMASACKVPA 163 (350)
Q Consensus 128 ~~~~~l~~~~r~~~~~~~l~~~l~v~~i~~~~~~~~ 163 (350)
.+++.+..+ |+..|.+++ ..-+.+.+.++++.|.
T Consensus 3 ~i~i~~~~G-rs~eqk~~l-~~~it~~l~~~~~~p~ 36 (61)
T PRK02220 3 YVHIKLIEG-RTEEQLKAL-VKDVTAAVSKNTGAPA 36 (61)
T ss_pred EEEEEEcCC-CCHHHHHHH-HHHHHHHHHHHhCcCh
Confidence 356777667 889998888 7888899999999865
No 102
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=23.93 E-value=3.2e+02 Score=24.35 Aligned_cols=67 Identities=16% Similarity=0.231 Sum_probs=38.4
Q ss_pred cchhHHHHHcCcceeEEecCC-CccccCCCceEEEEeecCchhhHHHHH----HHHHHHhhcCCCeeEEEEccC
Q 018839 184 EDQELEQIINGEICFKVYPFL-NETQVFNEERKIILSGSFNPLHDGHLK----LLEVATRICGNGYPCFELSAV 252 (350)
Q Consensus 184 ~d~~l~~~~~g~~~~~~f~~~-~~~~~~~~k~i~i~~GSFnP~H~gHl~----m~~~a~~~~~~d~v~~~~s~~ 252 (350)
..+++..+..-......+++. +.. .+. -..+|++|.++..+..++. +.+...+....+.+++-+|..
T Consensus 13 y~e~~~~l~~~G~~v~~~s~~~~~~-l~~-~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~pilgICgG 84 (198)
T cd03130 13 YPENLELLEAAGAELVPFSPLKDEE-LPD-ADGLYLGGGYPELFAEELSANQSMRESIRAFAESGGPIYAECGG 84 (198)
T ss_pred cHHHHHHHHHCCCEEEEECCCCCCC-CCC-CCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCCCEEEEccc
Confidence 445666665444556666653 222 233 5789999999887765552 333333333345566777753
No 103
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=23.10 E-value=2e+02 Score=19.77 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=26.7
Q ss_pred EEEEeCCchhhHHHHHHHHHHHHHHHHHhccCCCcc
Q 018839 129 STVTLSKGLRTREQEDKVSSHLLLKAMASACKVPAT 164 (350)
Q Consensus 129 ~~~~l~~~~r~~~~~~~l~~~l~v~~i~~~~~~~~~ 164 (350)
+++++..+ |+..|.+++ ..-+.+++.+.++.+.+
T Consensus 3 i~i~~~~g-rt~eqk~~l-~~~i~~~l~~~~g~~~~ 36 (58)
T cd00491 3 VQIYILEG-RTDEQKREL-IERVTEAVSEILGAPEA 36 (58)
T ss_pred EEEEEcCC-CCHHHHHHH-HHHHHHHHHHHhCcCcc
Confidence 56777777 888888888 78888999998887653
No 104
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=20.44 E-value=2.4e+02 Score=19.80 Aligned_cols=34 Identities=24% Similarity=0.273 Sum_probs=27.3
Q ss_pred EEEEeC-CchhhHHHHHHHHHHHHHHHHHhccCCCcc
Q 018839 129 STVTLS-KGLRTREQEDKVSSHLLLKAMASACKVPAT 164 (350)
Q Consensus 129 ~~~~l~-~~~r~~~~~~~l~~~l~v~~i~~~~~~~~~ 164 (350)
.++++. .+ |+..|.+++ ..-+.+++...++.+.+
T Consensus 3 i~i~i~~~g-rt~eqK~~l-~~~it~~l~~~lg~~~~ 37 (63)
T TIGR00013 3 VNIYILKEG-RTDEQKRQL-IEGVTEAMAETLGANLE 37 (63)
T ss_pred EEEEECCCC-CCHHHHHHH-HHHHHHHHHHHhCCCcc
Confidence 456676 56 889999998 88888999999987653
Done!