Query 018840
Match_columns 350
No_of_seqs 120 out of 141
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 04:29:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018840.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018840hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2735 Phosphatidylserine syn 100.0 8E-138 2E-142 1013.7 22.0 333 3-349 23-358 (466)
2 PLN02930 CDP-diacylglycerol-se 100.0 7E-135 1E-139 988.0 28.3 310 41-350 1-311 (353)
3 PF03034 PSS: Phosphatidyl ser 100.0 3E-115 7E-120 830.0 23.4 245 104-350 1-245 (280)
4 PF04892 VanZ: VanZ like famil 66.8 23 0.00049 29.5 6.6 58 187-254 64-127 (133)
5 PF06645 SPC12: Microsomal sig 43.9 40 0.00086 27.0 4.1 36 75-110 32-67 (76)
6 PRK00159 putative septation in 41.9 1.5E+02 0.0034 24.8 7.3 52 39-90 30-82 (87)
7 PRK02251 putative septation in 41.1 1.3E+02 0.0029 25.1 6.8 54 35-90 28-82 (87)
8 PF06781 UPF0233: Uncharacteri 37.9 1.6E+02 0.0035 24.5 6.9 53 37-90 28-82 (87)
9 PF11457 DUF3021: Protein of u 31.5 2.5E+02 0.0055 23.6 7.4 33 106-138 101-133 (136)
10 KOG4112 Signal peptidase subun 29.7 1.1E+02 0.0024 26.2 4.7 53 46-109 29-81 (101)
11 PF06197 DUF998: Protein of un 28.6 1.7E+02 0.0037 25.4 6.0 29 99-127 125-153 (184)
12 PF07895 DUF1673: Protein of u 26.4 3.2E+02 0.0069 25.6 7.7 79 38-123 49-140 (205)
13 KOG0252 Inorganic phosphate tr 24.8 3.1E+02 0.0068 29.8 8.0 135 106-255 221-369 (538)
14 CHL00204 ycf1 Ycf1; Provisiona 23.2 1.2E+02 0.0026 37.2 5.1 70 41-113 80-150 (1832)
15 KOG1688 Golgi proteins involve 22.6 1.1E+02 0.0025 28.8 3.9 29 109-146 63-91 (188)
16 COG5652 Predicted integral mem 21.9 59 0.0013 29.6 1.8 111 115-250 8-133 (148)
17 PF07331 TctB: Tripartite tric 20.5 2.4E+02 0.0053 23.6 5.3 19 43-61 37-55 (141)
No 1
>KOG2735 consensus Phosphatidylserine synthase [Lipid transport and metabolism]
Probab=100.00 E-value=7.6e-138 Score=1013.73 Aligned_cols=333 Identities=53% Similarity=0.946 Sum_probs=315.0
Q ss_pred CCCCCCCCCcccccc-ccccCCCCCCCCCCCccCCccceeecchHHHHHHHHHHHHHHHhhccCCCCCCCccchhhhhhH
Q 018840 3 GNEPNGHRGVRRKDH-VVQENGDTDTSSGSDELDPWTAWAYKPRTISFLLIGACFLIWASGALDPQSDSGDVVTSVKRGI 81 (350)
Q Consensus 3 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~ffykPhTit~L~v~~~~l~y~a~~~~~~~~~~~~~~Ni~~Gi 81 (350)
++||++.|+.||... +.+.-+..+++. ..|++++|||||||||+|++++|.++|+|++.++++ ++++|+|||+
T Consensus 23 ~~e~~~~r~~~r~e~~~~~~~~~~ne~~---vdDit~dffykphTiTlL~i~~~~l~y~a~~~~~~~---~t~~N~~rGi 96 (466)
T KOG2735|consen 23 SVEPNGARKLRRDELHEKMHFRMINERV---VDDITTDFFYKPHTITLLLILICFLIYKAFTGDTEN---TTETNVKRGI 96 (466)
T ss_pred ccCCCCccchhhhhhhhhhccCccceee---eccchhhheecCceehHHHHHHHHHHHHHHhCCCCc---chHHHHHHHH
Confidence 588998888887654 433334444443 459999999999999999999999999999987643 4678999999
Q ss_pred HHHHHHHHhhhhccCCCCcccCCChhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHcCCCC--CCCCCccccCCCc
Q 018840 82 WAMIAVFLTYCLLQAPSTVLIRPHPAIWRLVHGMAVVYLVALTFLLFQKRDDARQFMKFLHPDLG--VELPERSYGADCR 159 (350)
Q Consensus 82 ~a~i~~Fl~~~~l~~pdgpf~RPHPa~WR~V~g~~vlYll~LvFLLFQ~~~daR~~l~~ldP~Lg--~~l~eksYa~nC~ 159 (350)
+|++++||++|++|||||||+|||||+||+|||+||+|+++|+|+||||.+|+||+|+|+||+|| .++|||+||.||+
T Consensus 97 l~~i~~FL~~svlafpngpF~RPHPa~WR~vfg~SViYll~L~FlLFQ~~~d~r~~l~wldPkl~~~~~l~EkeYg~nC~ 176 (466)
T KOG2735|consen 97 LAMIAVFLIISVLAFPNGPFIRPHPALWRIVFGVSVIYLLFLQFLLFQTFDDIRQFLKWLDPKLGGQIELPEKEYGVNCS 176 (466)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCchHHHHHHHhHHHHHHHHHHHHHhhhHHHHhHheeeCcccCCCcccchhhhcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999 7899999999999
Q ss_pred cccccCCccchhhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhcCCCCcchhhhHHHHHHHHhh
Q 018840 160 IYVHENPTSRFKNVYETLFDEFVLAHIFGWWGKAILIRNQPLLWLLSIGFELMELTFRHMLPNFNECWWDSIILDILICN 239 (350)
Q Consensus 160 i~tp~~p~~~~~ni~~~~~DiF~~aH~~GW~~KaliiRd~~l~w~~SI~fEl~Elsf~H~LPNF~ECWWDh~iLDVL~CN 239 (350)
+|+|| |+|++ +|+|++|||+||++||++|||+++||++||+||++|++|+|+||||+||||||||||||+||
T Consensus 177 ~~spd-------ri~sh-~D~Fa~aHf~GW~mKalLIR~~~lcw~iSI~wEltE~~f~hlLPNFaECWWD~iILDVLiCN 248 (466)
T KOG2735|consen 177 IYSPD-------RIWSH-LDIFAFAHFLGWAMKALLIRHWVLCWVISIMWELTELTFRHLLPNFAECWWDSIILDVLICN 248 (466)
T ss_pred cCCHH-------HHhhh-hhhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHHHHheecc
Confidence 99864 68887 69999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcccccccccccccCCCcccchhhhhcccCCCccccccccCCCChhHHHHHHHHHHHHHHHhhhHHHh
Q 018840 240 WFGIWAGMHTVRYFDGKTYEWVGISRQPNIIGKFKRTLGQFTPAQWDKDEWHPLLGPWRFIQVLTLCIIFLTVELNTFFL 319 (350)
Q Consensus 240 ~lGI~lGm~~~~~l~~k~Y~W~g~~~i~~~~gK~Kr~~~QFtP~sw~~~~W~~~~s~~R~~~v~~l~~~~ll~ELN~FfL 319 (350)
|+|||+||++||+|+||+|+|+|+++||+++||+||++.||||+||+++||+|.+|++|+++|+.++++||++|||||||
T Consensus 249 glGI~~Gmk~c~~L~mrty~W~sik~i~t~~GK~KR~~lQFTPasW~~~~W~p~ss~~R~~~V~~lviiwlltELNTFFl 328 (466)
T KOG2735|consen 249 GLGIWAGMKTCRWLSMRTYHWESIKNIPTTRGKMKRAALQFTPASWSKFEWHPASSLRRFAAVYTLVIIWLLTELNTFFL 328 (466)
T ss_pred cchhhhHhHHHhhhcccceeeeeeccCcccchhHHHHhhccCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCChhHHHHHHHHHHHhhhhccc
Q 018840 320 KFCLWVPPRNPVIIYRLILWWLIAIPTIQN 349 (350)
Q Consensus 320 K~~Lwipp~h~l~~~RL~l~~l~~~pa~RE 349 (350)
||+|||||+||++++||++++++|+|++||
T Consensus 329 Khvf~ipp~Hpvv~~RlIli~~i~aptiRq 358 (466)
T KOG2735|consen 329 KHVFWIPPKHPVVLWRLILIALIAAPTIRQ 358 (466)
T ss_pred heeEecCCCCceeehhHHHHHhhccchHHH
Confidence 999999999999999999999999999998
No 2
>PLN02930 CDP-diacylglycerol-serine O-phosphatidyltransferase
Probab=100.00 E-value=6.8e-135 Score=988.04 Aligned_cols=310 Identities=90% Similarity=1.637 Sum_probs=303.0
Q ss_pred eecchHHHHHHHHHHHHHHHhhccCCCC-CCCccchhhhhhHHHHHHHHHhhhhccCCCCcccCCChhHHHHHHHHHHHH
Q 018840 41 AYKPRTISFLLIGACFLIWASGALDPQS-DSGDVVTSVKRGIWAMIAVFLTYCLLQAPSTVLIRPHPAIWRLVHGMAVVY 119 (350)
Q Consensus 41 fykPhTit~L~v~~~~l~y~a~~~~~~~-~~~~~~~Ni~~Gi~a~i~~Fl~~~~l~~pdgpf~RPHPa~WR~V~g~~vlY 119 (350)
+|||||||+|++++++++|++++.++++ ++.|+++|+|||+.|++++|++||++|+|||||+||||||||+|+|++|+|
T Consensus 1 ~y~phTit~l~~~~~~l~~~~~a~~~~~~~~~~~~~n~~~Gv~a~i~~fl~~~~lq~pdg~f~RPHPa~WR~v~gl~vlY 80 (353)
T PLN02930 1 AYKPHTISLLLIGACFLIWASGALDPESTTSGDLVTSVKRGVWAMIAVFLAYCLLQAPSTVLIRPHPAIWRLVHGMAVVY 80 (353)
T ss_pred CCCCccHHHHHHHHHHHHheeccccCcCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHH
Confidence 5999999999999999999988776544 356789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccChHHHHHHHHHHcCCCCCCCCCccccCCCccccccCCccchhhhhhcccchHHHHHHHHHHHHHHHHhhh
Q 018840 120 LVALTFLLFQKRDDARQFMKFLHPDLGVELPERSYGADCRIYVHENPTSRFKNVYETLFDEFVLAHIFGWWGKAILIRNQ 199 (350)
Q Consensus 120 ll~LvFLLFQ~~~daR~~l~~ldP~Lg~~l~eksYa~nC~i~tp~~p~~~~~ni~~~~~DiF~~aH~~GW~~KaliiRd~ 199 (350)
+++|+||||||+|||||+||++|||||+++|||+||+||++||||||+|+|+||+|+++|+|++||++||++||+|+||+
T Consensus 81 l~~LvFLLFq~~~d~R~~l~~ldp~Lg~~lpE~~Y~~nC~~~tp~~p~~~~~ni~~~~~D~F~~aH~lGW~~KaliiRd~ 160 (353)
T PLN02930 81 LVALTFLLFQKRDDARQFMKFLHPDLGVELPERSYGADCRIYTPEHPSSRFKNVYDTLFDEFVVAHILGWWGKAIMIRNQ 160 (353)
T ss_pred HHHHHHHHhccHHHHHHHHHhcChhhCCCCcccccccCceecCCCCcchhHHHhhhcccceehHHHHHHHHHHHHHHhcH
Confidence 99999999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCCcchhhhHHHHHHHHhhHHHHHHHHHhhhhcccccccccccccCCCcccchhhhhcc
Q 018840 200 PLLWLLSIGFELMELTFRHMLPNFNECWWDSIILDILICNWFGIWAGMHTVRYFDGKTYEWVGISRQPNIIGKFKRTLGQ 279 (350)
Q Consensus 200 ~l~w~~SI~fEl~Elsf~H~LPNF~ECWWDh~iLDVL~CN~lGI~lGm~~~~~l~~k~Y~W~g~~~i~~~~gK~Kr~~~Q 279 (350)
++||++||+||++|+||||+||||+||||||||||||+||++||++||++|||||||+|+|+|++++++++||+||++.|
T Consensus 161 ~l~w~~SI~FEl~Elsf~H~LPNF~ECWWDhiiLDVL~CN~lGI~lGm~~~k~l~~k~Y~W~g~~~~~~~~gk~kR~l~q 240 (353)
T PLN02930 161 PLLWVLSIGFELMELTFRHMLPNFNECWWDSIVLDVLICNWFGIWAGMHTVKYFDGKTYEWVGISRQPNIIGKVKRTLGQ 240 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCchHHHHhHHHHHHHHHhhHHHHHHHHHHHHHcCCccccccccCCCCcccchhhhHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccccCCCChhHHHHHHHHHHHHHHHhhhHHHhhhhhhcCCCChhHHHHHHHHHHHhhhhcccC
Q 018840 280 FTPAQWDKDEWHPLLGPWRFIQVLTLCIIFLTVELNTFFLKFCLWVPPRNPVIIYRLILWWLIAIPTIQNQ 350 (350)
Q Consensus 280 FtP~sw~~~~W~~~~s~~R~~~v~~l~~~~ll~ELN~FfLK~~Lwipp~h~l~~~RL~l~~l~~~pa~RE~ 350 (350)
|||+||++|+|++++|++||+++++++++++++|||+||||++|||||+||+|++||++|+++|+||+||.
T Consensus 241 FTP~sw~~~~W~~~~s~~rf~~v~~l~~~~~l~eLN~FFLK~~L~ipp~h~l~~~Rl~l~~~i~~~a~rEy 311 (353)
T PLN02930 241 FTPAQWDKDEWHPLQGPWRFLQVLFLCVVFLTVELNTFFLKFCLWIPPRNPLIVYRLILWWLIAIPTIREY 311 (353)
T ss_pred cCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999993
No 3
>PF03034 PSS: Phosphatidyl serine synthase; InterPro: IPR004277 Phosphatidyl serine synthase is also known as serine exchange enzyme (2.7.8 from EC). This family represents eukaryotic PSS I and II, membrane bound proteins that catalyse the replacement of the head group of a phospholipid (phosphotidylcholine or phosphotidylethanolamine) by L-serine.; GO: 0006659 phosphatidylserine biosynthetic process
Probab=100.00 E-value=3.2e-115 Score=830.04 Aligned_cols=245 Identities=60% Similarity=1.196 Sum_probs=243.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHcCCCCCCCCCccccCCCccccccCCccchhhhhhcccchHHH
Q 018840 104 PHPAIWRLVHGMAVVYLVALTFLLFQKRDDARQFMKFLHPDLGVELPERSYGADCRIYVHENPTSRFKNVYETLFDEFVL 183 (350)
Q Consensus 104 PHPa~WR~V~g~~vlYll~LvFLLFQ~~~daR~~l~~ldP~Lg~~l~eksYa~nC~i~tp~~p~~~~~ni~~~~~DiF~~ 183 (350)
|||||||+|+|++|+|+++|+||||||+|||||+|+++||+||+++|||+||+||++++||||++. +||+++ +|+|++
T Consensus 1 PHPa~WR~v~g~~v~Y~~~L~fllfq~~~~~r~~l~~~dp~Lg~~~~e~~Ya~nC~~~~~~~p~~~-~ni~~~-~D~f~~ 78 (280)
T PF03034_consen 1 PHPAFWRIVFGLSVLYLLFLVFLLFQNRDDARQILKYLDPSLGKPLPEKSYAENCRIYTPENPESP-HNIWDT-FDIFVL 78 (280)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCcccCCCCCCcCccCCCeeCCCCCCCcc-hhhHhh-cchhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998 999999 799999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhcCCCCcchhhhHHHHHHHHhhHHHHHHHHHhhhhccccccccccc
Q 018840 184 AHIFGWWGKAILIRNQPLLWLLSIGFELMELTFRHMLPNFNECWWDSIILDILICNWFGIWAGMHTVRYFDGKTYEWVGI 263 (350)
Q Consensus 184 aH~~GW~~KaliiRd~~l~w~~SI~fEl~Elsf~H~LPNF~ECWWDh~iLDVL~CN~lGI~lGm~~~~~l~~k~Y~W~g~ 263 (350)
||++||++||+|+||+++||++||+||++|+||||+||||+||||||||||||+||++||++||++|||||||+|+|+|+
T Consensus 79 aH~~GW~~Kali~Rd~~l~w~~Si~fE~~Elsf~h~LPnF~ECWWD~~iLDvl~CN~~Gi~~Gm~~~~~l~~k~Y~W~g~ 158 (280)
T PF03034_consen 79 AHFLGWFGKALILRDWWLCWILSIAFELLELSFQHLLPNFNECWWDHWILDVLICNGLGIWLGMKTCRYLEMKEYDWRGI 158 (280)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccchhhhhcccCCCccccccccCCCChhHHHHHHHHHHHHHHHhhhHHHhhhhhhcCCCChhHHHHHHHHHHHh
Q 018840 264 SRQPNIIGKFKRTLGQFTPAQWDKDEWHPLLGPWRFIQVLTLCIIFLTVELNTFFLKFCLWVPPRNPVIIYRLILWWLIA 343 (350)
Q Consensus 264 ~~i~~~~gK~Kr~~~QFtP~sw~~~~W~~~~s~~R~~~v~~l~~~~ll~ELN~FfLK~~Lwipp~h~l~~~RL~l~~l~~ 343 (350)
+++|+++||+||+++||||+||++|+|++++|++|++++++++++++++|||+|||||+|||||+||+|++||++|+++|
T Consensus 159 ~~~~~~~gk~kr~~~QFtP~sw~~~~W~~~~s~~rf~~v~~l~~~~ll~ELN~FFLK~vLwIPp~H~Lv~~RL~l~~li~ 238 (280)
T PF03034_consen 159 RDIPTYRGKLKRALLQFTPYSWTKYEWKPFSSPKRFLQVLFLLIVFLLSELNTFFLKHVLWIPPSHPLVIYRLLLWFLIG 238 (280)
T ss_pred ccCCchhHHHHHHHHccCCCcCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhheecCCCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccC
Q 018840 344 IPTIQNQ 350 (350)
Q Consensus 344 ~pa~RE~ 350 (350)
+||+||.
T Consensus 239 ~pAiREy 245 (280)
T PF03034_consen 239 APAIREY 245 (280)
T ss_pred HHHHHHH
Confidence 9999993
No 4
>PF04892 VanZ: VanZ like family ; InterPro: IPR006976 This entry represents a conserved sequence region found in the VanZ protein and also several phosphotransbutyrylases. VanZ confers low-level resistance to the glycopeptide antibiotic teicoplanin (Te). Analysis of cytoplasmic peptidoglycan precursors, accumulated in the presence of ramoplanin, showed that VanZ-mediated Te resistance does not involve incorporation of a substituent of D-alanine into the peptidoglycan precursors [].
Probab=66.84 E-value=23 Score=29.53 Aligned_cols=58 Identities=24% Similarity=0.329 Sum_probs=36.1
Q ss_pred HHHHHHHHHHh--h----hhHHHHHHHHHHHHHHHhhhcCCCCcchhhhHHHHHHHHhhHHHHHHHHHhhhhcc
Q 018840 187 FGWWGKAILIR--N----QPLLWLLSIGFELMELTFRHMLPNFNECWWDSIILDILICNWFGIWAGMHTVRYFD 254 (350)
Q Consensus 187 ~GW~~KaliiR--d----~~l~w~~SI~fEl~Elsf~H~LPNF~ECWWDh~iLDVL~CN~lGI~lGm~~~~~l~ 254 (350)
+|+..-...-| . ..+|-..|+..|+. |-.+|.- ..- +-|+ ++|++|..+|..+.+.+.
T Consensus 64 lG~l~~~~~~~~~~~~~~~~~~~~~sl~iE~~----Q~~~~~r-~~d----~~Dv-~~n~~G~~lG~~l~~~~~ 127 (133)
T PF04892_consen 64 LGFLLPLLFRRLRSWLLAILIGFLFSLFIELI----QLFLPGR-SFD----IDDV-LANTLGALLGYLLYRLIR 127 (133)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHHHHH----hccCCCC-CCC----HHHH-HHHHHHHHHHHHHHHHHH
Confidence 45555444432 3 34455666666665 6677765 222 3444 789999999999887664
No 5
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=43.88 E-value=40 Score=27.01 Aligned_cols=36 Identities=19% Similarity=0.238 Sum_probs=28.3
Q ss_pred hhhhhhHHHHHHHHHhhhhccCCCCcccCCChhHHH
Q 018840 75 TSVKRGIWAMIAVFLTYCLLQAPSTVLIRPHPAIWR 110 (350)
Q Consensus 75 ~Ni~~Gi~a~i~~Fl~~~~l~~pdgpf~RPHPa~WR 110 (350)
++.+..+.+.++.+++-.++..||=|+-|-||.=|.
T Consensus 32 q~~~~~~~~~~~g~~~~~lv~vP~Wp~y~r~p~~W~ 67 (76)
T PF06645_consen 32 QSFSYTFYIYGAGVVLTLLVVVPPWPFYNRHPLKWL 67 (76)
T ss_pred HHHHHHHHHHHHHHHHHHhheeCCcHhhcCCcccCC
Confidence 366777776666677777788999999999998774
No 6
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=41.92 E-value=1.5e+02 Score=24.75 Aligned_cols=52 Identities=17% Similarity=0.065 Sum_probs=26.5
Q ss_pred ceeecchHHHHHHHHHHHH-HHHhhccCCCCCCCccchhhhhhHHHHHHHHHh
Q 018840 39 AWAYKPRTISFLLIGACFL-IWASGALDPQSDSGDVVTSVKRGIWAMIAVFLT 90 (350)
Q Consensus 39 ~ffykPhTit~L~v~~~~l-~y~a~~~~~~~~~~~~~~Ni~~Gi~a~i~~Fl~ 90 (350)
.=-|.|--+.+++++++-+ +|+...-+.+--++=-.-|...|...+++.|++
T Consensus 30 p~W~~~~m~glm~~GllWlvvyYl~~~~~P~m~~lG~WN~~IGFg~~i~G~lm 82 (87)
T PRK00159 30 SVWYVVLMLGLMLIGLAWLVVNYLAGPAIPWMADLGPWNYAIGFALMITGLLM 82 (87)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccCchhHHHHHHHHHHHHHH
Confidence 3345898888888877633 222211111100011135887776666655554
No 7
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=41.09 E-value=1.3e+02 Score=25.11 Aligned_cols=54 Identities=15% Similarity=0.233 Sum_probs=27.6
Q ss_pred CCccceeecchHHHHHHHHHHHH-HHHhhccCCCCCCCccchhhhhhHHHHHHHHHh
Q 018840 35 DPWTAWAYKPRTISFLLIGACFL-IWASGALDPQSDSGDVVTSVKRGIWAMIAVFLT 90 (350)
Q Consensus 35 D~~~~ffykPhTit~L~v~~~~l-~y~a~~~~~~~~~~~~~~Ni~~Gi~a~i~~Fl~ 90 (350)
.++-.| |.|--+.+++++++-+ +|+...-+.+- ++=-.-|.-.|...+++.|++
T Consensus 28 ~~sP~W-~~~~m~~lm~~Gl~WlvvyYl~~~~~P~-~~lG~WN~~IGfg~~~~G~~m 82 (87)
T PRK02251 28 KSNPRW-FVPLFVALMIIGLIWLVVYYLSNGSLPI-PALGAWNLVIGFGLIMAGFGM 82 (87)
T ss_pred CCCCch-HHHHHHHHHHHHHHHHHHHhhhCCCcCc-ccccchhHHHHHHHHHHHHHH
Confidence 334445 5888888888877633 33221111111 111135777776655555544
No 8
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=37.87 E-value=1.6e+02 Score=24.51 Aligned_cols=53 Identities=19% Similarity=0.249 Sum_probs=29.6
Q ss_pred ccceeecchHHHHHHHHHHHH-HHHhhccC-CCCCCCccchhhhhhHHHHHHHHHh
Q 018840 37 WTAWAYKPRTISFLLIGACFL-IWASGALD-PQSDSGDVVTSVKRGIWAMIAVFLT 90 (350)
Q Consensus 37 ~~~ffykPhTit~L~v~~~~l-~y~a~~~~-~~~~~~~~~~Ni~~Gi~a~i~~Fl~ 90 (350)
...=-|.|--+++++++++-+ +|+....+ +.-. +=-.-|+-.|...+++.|++
T Consensus 28 ~sp~W~~p~m~~lmllGL~WiVvyYi~~~~i~pi~-~lG~WN~~IGfg~~~~Gf~m 82 (87)
T PF06781_consen 28 PSPRWYAPLMLGLMLLGLLWIVVYYISGGQIPPIP-DLGNWNLAIGFGLMIVGFLM 82 (87)
T ss_pred CCCccHHHHHHHHHHHHHHHHhhhhcccCCCCCcc-cccchHHHHHHHHHHHHHHH
Confidence 333446999999888887633 33322221 1111 11135888887777666654
No 9
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=31.47 E-value=2.5e+02 Score=23.62 Aligned_cols=33 Identities=9% Similarity=0.263 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccChHHHHHHH
Q 018840 106 PAIWRLVHGMAVVYLVALTFLLFQKRDDARQFM 138 (350)
Q Consensus 106 Pa~WR~V~g~~vlYll~LvFLLFQ~~~daR~~l 138 (350)
++++-......++|++.-...-.|++.|+|++=
T Consensus 101 ~~~~~~~~~fi~IYliIw~~~y~~~k~~i~kiN 133 (136)
T PF11457_consen 101 ISLLIFILIFIIIYLIIWLIFYLYWKKDIKKIN 133 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377777788889999999999999999999873
No 10
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.65 E-value=1.1e+02 Score=26.24 Aligned_cols=53 Identities=15% Similarity=0.239 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCccchhhhhhHHHHHHHHHhhhhccCCCCcccCCChhHH
Q 018840 46 TISFLLIGACFLIWASGALDPQSDSGDVVTSVKRGIWAMIAVFLTYCLLQAPSTVLIRPHPAIW 109 (350)
Q Consensus 46 Tit~L~v~~~~l~y~a~~~~~~~~~~~~~~Ni~~Gi~a~i~~Fl~~~~l~~pdgpf~RPHPa~W 109 (350)
.+.+++.+++.++|-..+ +....-+.++.+.|..=+.+..|-=|+.|-||-.|
T Consensus 29 q~ilti~aiVg~i~Gf~~-----------Qqls~tvy~vg~~~v~t~li~LPpwP~y~rn~LkW 81 (101)
T KOG4112|consen 29 QLILTIGAIVGFIYGFAQ-----------QQLSVTVYIVGAGFVFTLLITLPPWPWYRRNPLKW 81 (101)
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHhcCCCchhhhcCcccc
Confidence 344444455555554332 23444455556666666778899999999999877
No 11
>PF06197 DUF998: Protein of unknown function (DUF998); InterPro: IPR009339 This is a family of proteins with no known function.
Probab=28.58 E-value=1.7e+02 Score=25.36 Aligned_cols=29 Identities=31% Similarity=0.366 Sum_probs=13.7
Q ss_pred CcccCCChhHHHHHHHHHHHHHHHHHHhh
Q 018840 99 TVLIRPHPAIWRLVHGMAVVYLVALTFLL 127 (350)
Q Consensus 99 gpf~RPHPa~WR~V~g~~vlYll~LvFLL 127 (350)
....|+.++.-|...+++++=...+..+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184)
T PF06197_consen 125 SLRRRRRWARRRLFSAVALLLFVALLLLF 153 (184)
T ss_pred HhhcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555544444444443
No 12
>PF07895 DUF1673: Protein of unknown function (DUF1673); InterPro: IPR012874 This family contains hypothetical proteins of unknown function found in Methanosarcina acetivorans and Methanosarcina mazei.
Probab=26.40 E-value=3.2e+02 Score=25.64 Aligned_cols=79 Identities=14% Similarity=0.111 Sum_probs=44.5
Q ss_pred cceeecchHHHHHHHHHHHHHHHhhccCCCCCCCccchhhhhhHHHHHHHHHhhhhcc----------CCCCcccCCChh
Q 018840 38 TAWAYKPRTISFLLIGACFLIWASGALDPQSDSGDVVTSVKRGIWAMIAVFLTYCLLQ----------APSTVLIRPHPA 107 (350)
Q Consensus 38 ~~ffykPhTit~L~v~~~~l~y~a~~~~~~~~~~~~~~Ni~~Gi~a~i~~Fl~~~~l~----------~pdgpf~RPHPa 107 (350)
..|+.|-|+-+++.-....++|+-.... .--|...+++++.++.+.+++.. ....|.+|++.-
T Consensus 49 ~~~~~~~~~~~Ll~~~f~T~~~~L~i~~-------~gin~~~~ll~g~~~~L~~~i~~wk~~~~~~d~i~k~~v~~~~~k 121 (205)
T PF07895_consen 49 PGWFRKRSNRILLINIFFTLVYFLVISQ-------LGINLHLFLLAGLILSLYLYIFSWKKQMIRYDDIAKKPVIRNSNK 121 (205)
T ss_pred cceeeeccceeeHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccch
Confidence 4777777777666655555544421110 01233366777777666666554 345788888776
Q ss_pred ---HHHHHHHHHHHHHHHH
Q 018840 108 ---IWRLVHGMAVVYLVAL 123 (350)
Q Consensus 108 ---~WR~V~g~~vlYll~L 123 (350)
+|-+...+..++++..
T Consensus 122 ~~~~~~l~~i~~~i~l~~~ 140 (205)
T PF07895_consen 122 KKRFRLLLVIILLIILVMF 140 (205)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5555555555544433
No 13
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=24.80 E-value=3.1e+02 Score=29.82 Aligned_cols=135 Identities=17% Similarity=0.281 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccChHHHHHH-HHHHcCC-----CCCCCCC-ccccCCCccccccCCccchhhhhhccc
Q 018840 106 PAIWRLVHGMAVVYLVALTFLLFQKRDDARQF-MKFLHPD-----LGVELPE-RSYGADCRIYVHENPTSRFKNVYETLF 178 (350)
Q Consensus 106 Pa~WR~V~g~~vlYll~LvFLLFQ~~~daR~~-l~~ldP~-----Lg~~l~e-ksYa~nC~i~tp~~p~~~~~ni~~~~~ 178 (350)
-.+||+++|++.+--+....-=---+|++|.- |.-=||+ ..++++. -+-+++-+ .+...|.+.+.
T Consensus 221 d~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~-~~~~~~~~~~~------- 292 (538)
T KOG0252|consen 221 DGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAE-SDVPPPSNSFG------- 292 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhccc-cCCCCcccccc-------
Confidence 47999999999887665554444455555544 2222322 2222221 00011111 11112222222
Q ss_pred chHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHH----Hhh--hcCCCCcchhhhHHHHHHHHhhHHHHHHHHHhhh
Q 018840 179 DEFVLAHIFGWWGKAILIRNQPLLWL-LSIGFELMEL----TFR--HMLPNFNECWWDSIILDILICNWFGIWAGMHTVR 251 (350)
Q Consensus 179 DiF~~aH~~GW~~KaliiRd~~l~w~-~SI~fEl~El----sf~--H~LPNF~ECWWDh~iLDVL~CN~lGI~lGm~~~~ 251 (350)
-+..||.-|-+|-++- --.+|+ +.|+|==.-+ -++ -+.|-=+|= |...++-.-|.+=+.+|-.---
T Consensus 293 --~F~~~f~~~hg~~Llg--t~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~---~~~~~vA~~~~iia~~~~vPGy 365 (538)
T KOG0252|consen 293 --LFSRLFLRWHGKHLLG--TAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTY---HELFKVAEGNLIIAVCSTVPGY 365 (538)
T ss_pred --hHHHHHHHHHHHHHHH--HHHHHHhhhhhhhccccHHHHHHHhhccCCCcchH---HHHHHHHHHHHHHHHHccCCce
Confidence 2456677776654442 223343 2233211111 122 345666666 7888888888877666654443
Q ss_pred hccc
Q 018840 252 YFDG 255 (350)
Q Consensus 252 ~l~~ 255 (350)
++..
T Consensus 366 w~tv 369 (538)
T KOG0252|consen 366 WFTV 369 (538)
T ss_pred eEEE
Confidence 3333
No 14
>CHL00204 ycf1 Ycf1; Provisional
Probab=23.22 E-value=1.2e+02 Score=37.21 Aligned_cols=70 Identities=20% Similarity=0.215 Sum_probs=33.3
Q ss_pred eecchHHHHHHHHHHHHHHHhhcc-CCCCCCCccchhhhhhHHHHHHHHHhhhhccCCCCcccCCChhHHHHHH
Q 018840 41 AYKPRTISFLLIGACFLIWASGAL-DPQSDSGDVVTSVKRGIWAMIAVFLTYCLLQAPSTVLIRPHPAIWRLVH 113 (350)
Q Consensus 41 fykPhTit~L~v~~~~l~y~a~~~-~~~~~~~~~~~Ni~~Gi~a~i~~Fl~~~~l~~pdgpf~RPHPa~WR~V~ 113 (350)
+-||||||+|++--..+=++-... +..+ -+++..|.-|.+-.-++ ||-=-++|+= .||+=|-|.+=|+|.
T Consensus 80 LgRPHtITvL~lPYllFhffw~n~K~ff~-y~stt~nSmrn~~iq~v-FlnnlifQl~-N~~iLpss~LaRLvn 150 (1832)
T CHL00204 80 LGRPHTITVLALPYLLFHFFWNNHKHFFD-YGSTTRNSMRNLSIQCV-FLNNLIFQLF-NHFILPSSMLARLVN 150 (1832)
T ss_pred HcCchhhHHHHHHHHHHHHHHhcCCCccc-cCCCccccccchhHHHH-HHhhHHHHHh-hHhhcccHHHHHHHH
Confidence 358999999886443331121111 1111 11122233333322222 3222223333 368889999888874
No 15
>KOG1688 consensus Golgi proteins involved in ER retention (RER) [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.59 E-value=1.1e+02 Score=28.76 Aligned_cols=29 Identities=21% Similarity=0.489 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHcCCCC
Q 018840 109 WRLVHGMAVVYLVALTFLLFQKRDDARQFMKFLHPDLG 146 (350)
Q Consensus 109 WR~V~g~~vlYll~LvFLLFQ~~~daR~~l~~ldP~Lg 146 (350)
|=+|--..-+|++= .|+.|.++. .||+++
T Consensus 63 ~YII~Y~LgIYlLN-lfiaFLtPk--------~Dp~~~ 91 (188)
T KOG1688|consen 63 FYIITYALGIYLLN-LFIAFLTPK--------VDPELQ 91 (188)
T ss_pred HHHHHHHHHHHHHH-HHHHHhCCC--------CCchhh
Confidence 44444444455544 355666665 888884
No 16
>COG5652 Predicted integral membrane protein [Function unknown]
Probab=21.91 E-value=59 Score=29.61 Aligned_cols=111 Identities=17% Similarity=0.146 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHcCCCCCCCCCccccCCCccccccCCccchhhhhhcccchHHHHHHHHHHHHHH
Q 018840 115 MAVVYLVALTFLLFQKRDDARQFMKFLHPDLGVELPERSYGADCRIYVHENPTSRFKNVYETLFDEFVLAHIFGWWGKAI 194 (350)
Q Consensus 115 ~~vlYll~LvFLLFQ~~~daR~~l~~ldP~Lg~~l~eksYa~nC~i~tp~~p~~~~~ni~~~~~DiF~~aH~~GW~~Kal 194 (350)
.+++|+..+-++--|++|.+|+-+-..+=....+ +.+|. +.+.+| +.+..++ -.||++|.+.+.+
T Consensus 8 ~~i~~~~~v~~~s~~Pp~~~r~~l~v~~fl~~~~------~~~~~-~~~~~~--~~~~~~~------k~aH~~~Yf~lg~ 72 (148)
T COG5652 8 AGILWMKLVFPFSSQPPDSYRLTLLVHNFLSVYD------ALKPL-PPRPLP--VVNHRID------KLAHFLGYFSLGI 72 (148)
T ss_pred HHhhHHhhccccCCCChhHhhhhchHHHHHHHHH------HhccC-CCCCCC--cccchHH------HHHHHHHHHHHHH
Confidence 4556666666666677765555433222110000 22232 112222 2344444 4699999999985
Q ss_pred HH----hh-----------hhHHHHHHHHHHHHHHHhhhcCCCCcchhhhHHHHHHHHhhHHHHHHHHHhh
Q 018840 195 LI----RN-----------QPLLWLLSIGFELMELTFRHMLPNFNECWWDSIILDILICNWFGIWAGMHTV 250 (350)
Q Consensus 195 ii----Rd-----------~~l~w~~SI~fEl~Elsf~H~LPNF~ECWWDh~iLDVL~CN~lGI~lGm~~~ 250 (350)
++ |+ ..+|..++++.|.-...+ |- =++-+-|| +.|++|-.+|+...
T Consensus 73 l~f~ls~~~r~~~~~ai~av~i~~~~~~ldE~~Q~f~----PG-----R~~sl~Dv-i~d~iGA~lg~~~~ 133 (148)
T COG5652 73 LLFGLSRSTRLTGVIAIAAVFIGTLYGILDEVHQTFL----PG-----RAASLVDV-IADTIGAVLGHIWE 133 (148)
T ss_pred HhheeecccccceeehhhHHHHHHHHHHHHHHHHhhc----CC-----cchHHHHH-HHHHhhhheeeeEE
Confidence 53 22 257888899998765544 32 14567888 67889999887653
No 17
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=20.49 E-value=2.4e+02 Score=23.59 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=10.1
Q ss_pred cchHHHHHHHHHHHHHHHh
Q 018840 43 KPRTISFLLIGACFLIWAS 61 (350)
Q Consensus 43 kPhTit~L~v~~~~l~y~a 61 (350)
=|..+..+.+..+++....
T Consensus 37 fP~~l~~~l~~~~~~l~~~ 55 (141)
T PF07331_consen 37 FPRLLGILLLILSLLLLVR 55 (141)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3666666665554444333
Done!