Query 018840
Match_columns 350
No_of_seqs 120 out of 141
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 06:52:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018840.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018840hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zxe_B Na+,K+-ATPase beta subu 10.9 2.4E+02 0.0084 26.8 4.6 54 37-106 13-84 (305)
2 1jb0_J Photosystem 1 reaction 9.8 2.6E+02 0.009 19.4 3.2 19 300-318 15-33 (41)
3 1uwd_A Hypothetical protein TM 9.1 1.5E+02 0.0052 22.9 2.0 29 130-158 7-36 (103)
4 1wex_A Hypothetical protein (r 7.4 2E+02 0.0068 22.2 2.0 44 124-167 54-100 (104)
5 3arc_T Photosystem II reaction 6.6 4.6E+02 0.016 17.3 3.1 18 50-67 9-27 (32)
6 1pxv_A Cysteine protease; hydr 6.4 2.4E+02 0.0081 25.4 2.1 20 132-151 51-71 (183)
7 1jb0_K Photosystem 1 reaction 6.3 1.4E+02 0.0047 23.7 0.5 19 233-251 17-35 (83)
8 3cq1_A Putative uncharacterize 5.8 2.1E+02 0.0071 22.2 1.3 23 131-153 8-31 (103)
9 1wqc_A OMTX1; toxin; NMR {Opis 5.7 2.1E+02 0.0073 18.0 1.0 14 212-226 4-17 (26)
10 2kz7_C Carmil homolog, leucine 5.6 4.7E+02 0.016 20.8 3.2 35 6-43 45-80 (85)
No 1
>2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_B* 3b8e_B*
Probab=10.93 E-value=2.4e+02 Score=26.85 Aligned_cols=54 Identities=22% Similarity=0.250 Sum_probs=20.9
Q ss_pred ccceeecchHHHHHH-----HHHHHHHHHhhccCCCCCCCccchhhhhhHHHHHHHHHhhhhccC-------------CC
Q 018840 37 WTAWAYKPRTISFLL-----IGACFLIWASGALDPQSDSGDVVTSVKRGIWAMIAVFLTYCLLQA-------------PS 98 (350)
Q Consensus 37 ~~~ffykPhTit~L~-----v~~~~l~y~a~~~~~~~~~~~~~~Ni~~Gi~a~i~~Fl~~~~l~~-------------pd 98 (350)
.-.|+|.|.|=++|. -+-+++.|.++ .|++|+++.++++.++|. +-
T Consensus 13 ~k~f~~n~~~~~~lGRT~~sW~~IllFYliF----------------Y~~La~lF~~~m~v~l~tl~~~~Pk~q~~i~~P 76 (305)
T 2zxe_B 13 WKKFLWDSEKKEFLGRTGSSWFKIFLFYLIF----------------YGCLAGIFIGTIQVLLLTLSDFEPKYQDRVAPP 76 (305)
T ss_dssp ---------------CCSTTHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHTSCSSSCSCCTTTCSC
T ss_pred hhhheeCcccCeEecccHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHccccCCccccCCCCC
Confidence 447888888877664 12233444433 235555555555555443 33
Q ss_pred CcccCCCh
Q 018840 99 TVLIRPHP 106 (350)
Q Consensus 99 gpf~RPHP 106 (350)
|.-.||.|
T Consensus 77 GL~~~P~~ 84 (305)
T 2zxe_B 77 GLSHAPYA 84 (305)
T ss_dssp CBCCSSCC
T ss_pred eeeEecCC
Confidence 88999998
No 2
>1jb0_J Photosystem 1 reaction centre subunit IX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.18.1 PDB: 3pcq_J*
Probab=9.76 E-value=2.6e+02 Score=19.43 Aligned_cols=19 Identities=16% Similarity=0.312 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhhhHHH
Q 018840 300 IQVLTLCIIFLTVELNTFF 318 (350)
Q Consensus 300 ~~v~~l~~~~ll~ELN~Ff 318 (350)
..+.+-...-++.|.|.||
T Consensus 15 a~~w~~~tAg~lIEiNRff 33 (41)
T 1jb0_J 15 AAIWMTITAGILIEFNRFY 33 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 3344445677899999998
No 3
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=9.13 E-value=1.5e+02 Score=22.93 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=21.2
Q ss_pred ChHHHHHHHH-HHcCCCCCCCCCccccCCC
Q 018840 130 KRDDARQFMK-FLHPDLGVELPERSYGADC 158 (350)
Q Consensus 130 ~~~daR~~l~-~ldP~Lg~~l~eksYa~nC 158 (350)
+.+++++.|+ ..||++|..+.+-..=.++
T Consensus 7 ~~~~V~~aL~~V~DPel~~~iv~lG~V~~v 36 (103)
T 1uwd_A 7 TKEDVLNALKNVIDFELGLDVVSLGLVYDI 36 (103)
T ss_dssp CHHHHHHHHTTCBCTTTSSBTTTTTCCCCE
T ss_pred hHHHHHHHHcCCCCCCCCcChhhcCCeeEE
Confidence 5678999997 5599999988775433333
No 4
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=7.44 E-value=2e+02 Score=22.24 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=30.0
Q ss_pred HHhhccChHHHHHHHHHHcC---CCCCCCCCccccCCCccccccCCc
Q 018840 124 TFLLFQKRDDARQFMKFLHP---DLGVELPERSYGADCRIYVHENPT 167 (350)
Q Consensus 124 vFLLFQ~~~daR~~l~~ldP---~Lg~~l~eksYa~nC~i~tp~~p~ 167 (350)
.|.-|.+.++|.+.++.++- .++...-.-+|+..=.+..|.|+.
T Consensus 54 aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~~~~~~~~ 100 (104)
T 1wex_A 54 ALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRITRPGNSG 100 (104)
T ss_dssp EEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSCCCSCCSC
T ss_pred EEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCccccCCCCCC
Confidence 78889999999999998853 243332345677666666665543
No 5
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=6.60 E-value=4.6e+02 Score=17.34 Aligned_cols=18 Identities=11% Similarity=0.181 Sum_probs=8.9
Q ss_pred HHHHHH-HHHHHhhccCCC
Q 018840 50 LLIGAC-FLIWASGALDPQ 67 (350)
Q Consensus 50 L~v~~~-~l~y~a~~~~~~ 67 (350)
+++++. ++.++.+.++|+
T Consensus 9 ll~~tlgiiFFAI~FRePP 27 (32)
T 3arc_T 9 IFACIIALFFFAIFFREPP 27 (32)
T ss_dssp HHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHhhhhcCCC
Confidence 344444 444444667664
No 6
>1pxv_A Cysteine protease; hydrolase; 1.80A {Staphylococcus aureus} SCOP: d.3.1.1 PDB: 1y4h_A
Probab=6.36 E-value=2.4e+02 Score=25.40 Aligned_cols=20 Identities=30% Similarity=0.619 Sum_probs=15.7
Q ss_pred HHHHHHHHHHcCCCC-CCCCC
Q 018840 132 DDARQFMKFLHPDLG-VELPE 151 (350)
Q Consensus 132 ~daR~~l~~ldP~Lg-~~l~e 151 (350)
-.|+++|+.+.|++- ++++.
T Consensus 51 ~nA~~iMr~~yPN~s~~~l~~ 71 (183)
T 1pxv_A 51 YNAHDIMRTLYPEVSEQDLPN 71 (183)
T ss_dssp CCHHHHHHHHSTTSCTTTGGG
T ss_pred CCHHHHHHHHCCCCChhHHhh
Confidence 359999999999995 44554
No 7
>1jb0_K Photosystem 1 reaction centre subunit X; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.30.1.1 PDB: 3pcq_K*
Probab=6.30 E-value=1.4e+02 Score=23.75 Aligned_cols=19 Identities=32% Similarity=0.684 Sum_probs=13.4
Q ss_pred HHHHHhhHHHHHHHHHhhh
Q 018840 233 LDILICNWFGIWAGMHTVR 251 (350)
Q Consensus 233 LDVL~CN~lGI~lGm~~~~ 251 (350)
+=..+||.+.|.+|-.+.|
T Consensus 17 iIMI~cN~lai~igk~~I~ 35 (83)
T 1jb0_K 17 LVVILCNLFAIALGRYAIQ 35 (83)
T ss_dssp ---CHHHHHHHHHHHC-CC
T ss_pred eeehhHHHHHHHHHHHHHc
Confidence 3457899999999988774
No 8
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=5.81 E-value=2.1e+02 Score=22.19 Aligned_cols=23 Identities=17% Similarity=0.439 Sum_probs=18.2
Q ss_pred hHHHHHHHHH-HcCCCCCCCCCcc
Q 018840 131 RDDARQFMKF-LHPDLGVELPERS 153 (350)
Q Consensus 131 ~~daR~~l~~-ldP~Lg~~l~eks 153 (350)
.+++++.|+- .||++|..+.+-.
T Consensus 8 ~~~V~~aL~~V~DPel~~~iv~lG 31 (103)
T 3cq1_A 8 EAQAWALLEAVYDPELGLDVVNLG 31 (103)
T ss_dssp HHHHHHHHTTCBCTTTCSBTTTTT
T ss_pred HHHHHHHHhCCCCCCCCcCchhcC
Confidence 5788899974 7999999887643
No 9
>1wqc_A OMTX1; toxin; NMR {Opisthacanthus madagascariensis} PDB: 1wqd_A
Probab=5.67 E-value=2.1e+02 Score=18.02 Aligned_cols=14 Identities=29% Similarity=0.612 Sum_probs=10.3
Q ss_pred HHHHhhhcCCCCcch
Q 018840 212 MELTFRHMLPNFNEC 226 (350)
Q Consensus 212 ~Elsf~H~LPNF~EC 226 (350)
.|.-+|| -||-+||
T Consensus 4 ~evClqh-~gNVkeC 17 (26)
T 1wqc_A 4 YEVCLQQ-HGNVKEC 17 (26)
T ss_dssp HHHHHHH-CCCSHHH
T ss_pred HHHHHHh-CCCHHHH
Confidence 4666777 4888888
No 10
>2kz7_C Carmil homolog, leucine-rich repeat-containing protein 16A; trosy, paramagnetic relaxation enhancement, protein-protein protein binding; NMR {Mus musculus}
Probab=5.56 E-value=4.7e+02 Score=20.77 Aligned_cols=35 Identities=11% Similarity=0.053 Sum_probs=0.0
Q ss_pred CCCCCCccccccccccCCCCCCCCCCCccCCcc-ceeec
Q 018840 6 PNGHRGVRRKDHVVQENGDTDTSSGSDELDPWT-AWAYK 43 (350)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~ffyk 43 (350)
+++....+......++..+|.+.. ..|..+ +||+|
T Consensus 45 ~P~~~~~~~~~~~p~e~e~Ngl~a---RvDEGveEFFsK 80 (85)
T 2kz7_C 45 QPTQAAVCTISILPQDGEQNGLMG---RVDEGVDEFFTK 80 (85)
T ss_dssp CCSSCCCCCCSSCSCSCCTTCCCC---SSCCCCSSSSCC
T ss_pred CCCCCccCcCccCCcccccccchh---hhhccHHHHHHh
Done!