Query 018840
Match_columns 350
No_of_seqs 120 out of 141
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 06:52:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018840.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018840hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0k_ f.30.1.1 (K:) Photosys 13.5 23 0.0017 24.7 0.5 17 236-252 1-17 (58)
2 d1pxva_ d.3.1.1 (A:) Staphopai 12.3 46 0.0034 27.7 2.1 20 133-152 52-72 (183)
3 d1jb0j_ f.23.18.1 (J:) Subunit 10.0 1.3E+02 0.0094 19.4 3.3 19 300-318 15-33 (41)
4 d1oqca_ a.24.15.1 (A:) Augment 7.6 58 0.0042 24.2 0.9 14 106-119 12-25 (112)
5 d1jr8a_ a.24.15.1 (A:) Thiol o 6.5 72 0.0052 23.5 0.9 14 106-119 10-23 (105)
6 d1mv8a1 a.100.1.4 (A:203-300) 5.9 1.8E+02 0.013 20.9 3.0 30 129-159 34-67 (98)
7 d1wexa_ d.58.7.1 (A:) Heteroge 5.9 1.6E+02 0.012 20.6 2.7 43 124-166 54-99 (104)
8 d1orsc_ f.14.1.1 (C:) Potassiu 5.4 3.1E+02 0.022 20.3 4.3 39 104-142 4-43 (132)
9 d1t77a2 b.55.1.6 (A:2076-2185) 5.4 1E+02 0.0076 22.8 1.3 22 124-146 88-109 (110)
10 d1q90l_ f.23.24.1 (L:) PetL su 5.3 1.2E+02 0.0087 18.3 1.2 14 240-253 18-31 (32)
No 1
>d1jb0k_ f.30.1.1 (K:) Photosystem I reaction center subunit X, PsaK {Synechococcus elongatus [TaxId: 32046]}
Probab=13.48 E-value=23 Score=24.70 Aligned_cols=17 Identities=29% Similarity=0.645 Sum_probs=14.0
Q ss_pred HHhhHHHHHHHHHhhhh
Q 018840 236 LICNWFGIWAGMHTVRY 252 (350)
Q Consensus 236 L~CN~lGI~lGm~~~~~ 252 (350)
++||.+.|.+|-.+.|+
T Consensus 1 I~cN~lai~ig~~tI~~ 17 (58)
T d1jb0k_ 1 ILCNLFAIALGRYAIQS 17 (58)
T ss_dssp CHHHHHHHHHHHC-CCC
T ss_pred CeehhHHHHHHHHHHcC
Confidence 37999999999988865
No 2
>d1pxva_ d.3.1.1 (A:) Staphopain SspB {Staphylococcus aureus [TaxId: 1280]}
Probab=12.29 E-value=46 Score=27.74 Aligned_cols=20 Identities=30% Similarity=0.609 Sum_probs=15.6
Q ss_pred HHHHHHHHHcCCC-CCCCCCc
Q 018840 133 DARQFMKFLHPDL-GVELPER 152 (350)
Q Consensus 133 daR~~l~~ldP~L-g~~l~ek 152 (350)
.|+++|++|.|+| |..++.+
T Consensus 52 ~A~~iMR~lyPn~s~~~l~~~ 72 (183)
T d1pxva_ 52 NAHDIMRTLYPEVSEQDLPNC 72 (183)
T ss_dssp CHHHHHHHHSTTSCTTTGGGC
T ss_pred CHHHHHHHhCCCcccchhhhc
Confidence 3999999999998 4456543
No 3
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=9.96 E-value=1.3e+02 Score=19.35 Aligned_cols=19 Identities=16% Similarity=0.312 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhhhHHH
Q 018840 300 IQVLTLCIIFLTVELNTFF 318 (350)
Q Consensus 300 ~~v~~l~~~~ll~ELN~Ff 318 (350)
..+.+-...-++.|.|.||
T Consensus 15 a~~w~~~tAG~lIEiNRFf 33 (41)
T d1jb0j_ 15 AAIWMTITAGILIEFNRFY 33 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 3444556667899999998
No 4
>d1oqca_ a.24.15.1 (A:) Augmenter of liver regeneration {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=7.64 E-value=58 Score=24.16 Aligned_cols=14 Identities=29% Similarity=0.774 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHH
Q 018840 106 PAIWRLVHGMAVVY 119 (350)
Q Consensus 106 Pa~WR~V~g~~vlY 119 (350)
|+.|+++|.++.-|
T Consensus 12 p~~W~~lH~ia~~y 25 (112)
T d1oqca_ 12 RNTWAFLHTLAAYY 25 (112)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHC
Confidence 89999999988766
No 5
>d1jr8a_ a.24.15.1 (A:) Thiol oxidase Erv2p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.48 E-value=72 Score=23.47 Aligned_cols=14 Identities=21% Similarity=0.629 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHH
Q 018840 106 PAIWRLVHGMAVVY 119 (350)
Q Consensus 106 Pa~WR~V~g~~vlY 119 (350)
|+.|+++|.++.-|
T Consensus 10 p~~W~~lHtia~~y 23 (105)
T d1jr8a_ 10 RASWKYFHTLLARF 23 (105)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHC
Confidence 89999999888654
No 6
>d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=5.94 E-value=1.8e+02 Score=20.88 Aligned_cols=30 Identities=13% Similarity=0.375 Sum_probs=22.0
Q ss_pred cChHHHHHHHHHHcCCCCCC---C-CCccccCCCc
Q 018840 129 QKRDDARQFMKFLHPDLGVE---L-PERSYGADCR 159 (350)
Q Consensus 129 Q~~~daR~~l~~ldP~Lg~~---l-~eksYa~nC~ 159 (350)
-|.+++++.+. .||.+|.. + |-..||.-|-
T Consensus 34 ~d~~~v~~~~~-~d~ri~~~~~~~~pG~G~GG~Cl 67 (98)
T d1mv8a1 34 VDGREVMDVIC-QDHKLNLSRYYMRPGFAFGGSCL 67 (98)
T ss_dssp SCHHHHHHHHT-TCTTTTTSSTTCSCCSCCCSSSH
T ss_pred hhHHHHHHHHh-cCccccccccccCCcccCCcccc
Confidence 36777888774 78888743 2 7778999993
No 7
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.94 E-value=1.6e+02 Score=20.58 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=29.6
Q ss_pred HHhhccChHHHHHHHHHHc--C-CCCCCCCCccccCCCccccccCC
Q 018840 124 TFLLFQKRDDARQFMKFLH--P-DLGVELPERSYGADCRIYVHENP 166 (350)
Q Consensus 124 vFLLFQ~~~daR~~l~~ld--P-~Lg~~l~eksYa~nC~i~tp~~p 166 (350)
.|+-|.+.++|++.++.++ | .++....+-+|+..=++.+|.++
T Consensus 54 AfV~f~~~e~A~~ai~~~~~~~~~~~g~~l~v~~s~~~~~~~~~~~ 99 (104)
T d1wexa_ 54 ALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRITRPGNS 99 (104)
T ss_dssp EEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSCCCSCCS
T ss_pred EEEEeCCHHHHHHHHHHHcCCCcEEeeEEEEEEEcCCCccCCCCCC
Confidence 5889999999999999874 2 35444345577765566665443
No 8
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]}
Probab=5.44 E-value=3.1e+02 Score=20.27 Aligned_cols=39 Identities=13% Similarity=0.067 Sum_probs=25.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHc
Q 018840 104 PHPAIWRLVHGMAVVYLVALTFLLF-QKRDDARQFMKFLH 142 (350)
Q Consensus 104 PHPa~WR~V~g~~vlYll~LvFLLF-Q~~~daR~~l~~ld 142 (350)
-||.+-..+..+.++-.+.++.=.. |-.++.++.+.++|
T Consensus 4 ~~p~~e~~i~~lillnvi~~~let~~~~~~~~~~~l~~~e 43 (132)
T d1orsc_ 4 EHPLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVD 43 (132)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHH
Confidence 5899999998888888877766433 32444444444444
No 9
>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.41 E-value=1e+02 Score=22.84 Aligned_cols=22 Identities=23% Similarity=0.609 Sum_probs=16.0
Q ss_pred HHhhccChHHHHHHHHHHcCCCC
Q 018840 124 TFLLFQKRDDARQFMKFLHPDLG 146 (350)
Q Consensus 124 vFLLFQ~~~daR~~l~~ldP~Lg 146 (350)
.|+-|+|.++.+++++.+ |++|
T Consensus 88 ~~~~F~~~~~~~~v~~~l-~~v~ 109 (110)
T d1t77a2 88 VMFNFPDPATVKKVVNFL-PRVG 109 (110)
T ss_dssp EEEECSSHHHHHHHHHHS-CSCT
T ss_pred EEEEeCCHHHHHHHHHhc-cccC
Confidence 466678888888888877 5554
No 10
>d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.30 E-value=1.2e+02 Score=18.26 Aligned_cols=14 Identities=29% Similarity=0.499 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhc
Q 018840 240 WFGIWAGMHTVRYF 253 (350)
Q Consensus 240 ~lGI~lGm~~~~~l 253 (350)
.+||++|+.-+-++
T Consensus 18 tlgiylgllkvvkl 31 (32)
T d1q90l_ 18 TLGIYLGLLKVVKL 31 (32)
T ss_dssp HHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHhh
Done!