Query 018842
Match_columns 350
No_of_seqs 133 out of 156
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 06:54:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018842.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018842hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qg8_A Protein (spore coat pol 90.8 0.51 1.7E-05 40.5 6.7 119 184-325 87-215 (255)
2 2z86_A Chondroitin synthase; G 83.1 3 0.0001 41.4 8.0 108 108-220 92-210 (625)
3 1xhb_A Polypeptide N-acetylgal 76.2 3.8 0.00013 39.2 6.0 140 184-328 113-262 (472)
4 2ffu_A Ppgalnact-2, polypeptid 72.5 3.1 0.00011 40.4 4.4 109 108-222 65-183 (501)
5 3bcv_A Putative glycosyltransf 69.6 3.5 0.00012 34.7 3.6 109 108-221 4-120 (240)
6 3f1y_A Mannosyl-3-phosphoglyce 66.4 5.4 0.00018 38.5 4.6 197 108-325 93-310 (387)
7 4fix_A UDP-galactofuranosyl tr 59.8 18 0.00062 37.4 7.3 37 185-221 268-305 (657)
8 2d7i_A Polypeptide N-acetylgal 54.2 31 0.0011 34.5 7.7 211 108-328 111-342 (570)
9 1omz_A Alpha-1,4-N-acetylhexos 40.8 12 0.00043 35.6 2.3 101 109-213 28-134 (293)
10 3l7i_A Teichoic acid biosynthe 38.7 6.5 0.00022 40.3 0.0 36 183-218 81-116 (729)
11 2z86_A Chondroitin synthase; G 35.5 91 0.0031 30.7 7.7 108 108-220 374-490 (625)
12 2nxv_A ATP synthase subunits r 33.6 26 0.00088 30.8 3.0 29 184-212 73-101 (249)
13 2c0n_A A197; thermophil protei 30.5 17 0.00059 33.3 1.4 39 173-218 44-85 (203)
No 1
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=90.85 E-value=0.51 Score=40.48 Aligned_cols=119 Identities=8% Similarity=-0.052 Sum_probs=67.7
Q ss_pred CCccEEEEecCcccCCCCCHHHHHHHHHHh-CCccccCCc-----CCCCCceeeeeeeeecCcccceeeecccCCccCCC
Q 018842 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSE-GFEISQPAL-----DPNSTEIHHKFTIRARTKKFHRRVYDLRGSVKCTN 257 (350)
Q Consensus 184 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~-gLeISQPAL-----d~~s~~i~h~iT~r~~~~~vHr~~~~~~g~~~C~~ 257 (350)
+..|||++.|+|..++...++++++.++++ +..+..+.. +.+ +...+.. . .+...+..
T Consensus 87 a~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~-~-~~~~~~~~------------- 150 (255)
T 1qg8_A 87 AEGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYSASKTYHLNEN-RDIVKET-V-RPAAQVTW------------- 150 (255)
T ss_dssp CCCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEEEEEEEEEEC----CEEEEE-E-ECCCSCBS-------------
T ss_pred cCCCEEEEeCCCCccChHHHHHHHHHHHhCCCceEEEeceEEEEeCCC-Ccchhhc-c-CchHHHHH-------------
Confidence 688999999999999998899999999876 666666543 221 1111110 0 01100100
Q ss_pred CCCCCCccceEEEeccccChhHHHHhhhhh----ccCCcceehhhhhhhhhhcCCCCCcEEEEeeeeEEeec
Q 018842 258 ISEGPPCTGFVEGMAPVFSRSAWYCAWHLI----QNDLVHGWGMDMKLGYCAQGDRTKNVGIIDSEYVVHQG 325 (350)
Q Consensus 258 ~~~~ppcT~FVEiMAPVFSR~Awrcvw~mi----qNdlvhGWGLDf~w~~ca~g~~~~kiGVVDa~~V~H~~ 325 (350)
....++-..+=+|+|++++.+-..+ ..+.....+-|+.+...+.. .+ ++..++...+.|+.
T Consensus 151 -----~~~~~~~~~~~~~rr~~~~~~g~~f~~~~~~~~~~~~~eD~~~~~r~~~-~g-~~~~~~~~~~~~r~ 215 (255)
T 1qg8_A 151 -----NAPCAIDHCSVMHRYSVLEKVKEKFGSYWDESPAFYRIGDARFFWRVNH-FY-PFYPLDEELDLNYI 215 (255)
T ss_dssp -----CCTTTSCGGGEEEETHHHHHHHHHHSSSSCCCGGGSTTHHHHHHHHHTT-TC-CBEEEEEEEEEEEE
T ss_pred -----hhcCCCccceEEEEHHHHHhhcccccccccCCcccchHHHHHHHHHHHH-hC-CEEEecCcEEEEEE
Confidence 0111222234578999999874222 11222334567665544432 23 68899988887773
No 2
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=83.07 E-value=3 Score=41.35 Aligned_cols=108 Identities=15% Similarity=0.233 Sum_probs=59.9
Q ss_pred CCccEEEEeccCcccccHHHHHhhcC----CCCcEEEEEEeCCCCCccCC-C-CCCC-ceEEEEEeccc---hhhhhccc
Q 018842 108 SNRNLLAIPAGIKQKDNVDAIVRKFL----PENFTVILFHYDGDVNAWRG-L-DWSN-KAIHIAAQNQT---KWWFAKRF 177 (350)
Q Consensus 108 ~~k~Lv~~~VG~kqk~~Vd~~v~kf~----~~nFdv~LfhYDg~vd~W~d-~-~ws~-~aiHv~a~kqt---Kww~akRf 177 (350)
.++.-|++++=.. ...+...++... ..++.|++.. ||..|+=.+ + ++.+ ..+++....+. +=.....-
T Consensus 92 ~p~vsviIp~~n~-~~~l~~~l~sl~~q~~~~~~eiivvD-d~s~d~t~~~~~~~~~~~~i~~i~~~~~~~g~~~a~N~g 169 (625)
T 2z86_A 92 IDGLSIVIPTYNR-AKILAITLACLCNQKTIYDYEVIVAD-DGSKENIEEIVREFESLLNIKYVRQKDYGYQLCAVRNLG 169 (625)
T ss_dssp CCCEEEEEEESSC-HHHHHHHHHHHHTCCCSSCEEEEEEE-ESCSSCHHHHHHTTTTTSCEEEEEECCCSCCHHHHHHHH
T ss_pred CCcEEEEEecCCc-HHHHHHHHHHHHhhccCCCeEEEEEe-CCCchhHHHHHHHhhhcCCeEEEEeCCCCcchhHHHHHH
Confidence 4566677777443 344444444332 2378888776 666554221 1 0111 12333333221 21111111
Q ss_pred cCccccCCccEEEEecCcccCCCCCHHHHHHHHHHhC-CccccC
Q 018842 178 LHPDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSEG-FEISQP 220 (350)
Q Consensus 178 LHPdiv~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~g-LeISQP 220 (350)
+ -.+.+|||++.|+|..++.-.+.++++.+++.. ..+.+|
T Consensus 170 ~---~~a~g~~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~~~g~ 210 (625)
T 2z86_A 170 L---RAAKYNYVAILDCDMAPNPLWVQSYMELLAVDDNVALIGP 210 (625)
T ss_dssp H---HHCCSSEEEEECTTEEECTTHHHHHHHHHHHCTTEEEECC
T ss_pred H---HhCCcCEEEEECCCCCCCHHHHHHHHHHHhcCCceEEEEe
Confidence 1 135899999999999999999999999998743 344444
No 3
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=76.18 E-value=3.8 Score=39.20 Aligned_cols=140 Identities=16% Similarity=0.063 Sum_probs=70.2
Q ss_pred CCccEEEEecCcccCCCCCHHHHHHHHHHhCCccccCCcCCCC-Cceeee----eeeeecCcccceeeecccCC--ccCC
Q 018842 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDPNS-TEIHHK----FTIRARTKKFHRRVYDLRGS--VKCT 256 (350)
Q Consensus 184 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~s-~~i~h~----iT~r~~~~~vHr~~~~~~g~--~~C~ 256 (350)
+..|||++.|+|..++.--++++++.+++..-.+..|.++.-. ....+. .+...-...++......... ..-.
T Consensus 113 A~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (472)
T 1xhb_A 113 SRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRK 192 (472)
T ss_dssp CCSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEEEEEEEEECSSSCCEECCCTTEEEEECTTCCEEEEECCHHHHHHTT
T ss_pred ccCCeEEEECCCeEeCccHHHHHHHHHHhCCCEEEEeeeeeEcCCCceeccCCCcccceeeccceeecccCCHHHHhccc
Confidence 6789999999999999999999999999877666666542100 001110 00000000000000000000 0000
Q ss_pred CCCCCCCccceEEEeccccChhHHHHhhhhhccCCcceeh---hhhhhhhhhcCCCCCcEEEEeeeeEEeeccCC
Q 018842 257 NISEGPPCTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWG---MDMKLGYCAQGDRTKNVGIIDSEYVVHQGIQT 328 (350)
Q Consensus 257 ~~~~~ppcT~FVEiMAPVFSR~Awrcvw~miqNdlvhGWG---LDf~w~~ca~g~~~~kiGVVDa~~V~H~~~pt 328 (350)
.....+..+.++-..+=+|+|++|+.+= .+. +....|| +|+.+.. .+ .+.++.++....|.|....+
T Consensus 193 ~~~~~~~~~~~~~g~~~~irr~~~~~iG-gfd-e~~~~~g~ED~dl~~R~-~~--~G~~i~~~p~~~v~H~~~~~ 262 (472)
T 1xhb_A 193 GDRTLPVRTPTMAGGLFSIDRDYFQEIG-TYD-AGMDIWGGENLEISFRI-WQ--CGGTLEIVTCSHVGHVFRKA 262 (472)
T ss_dssp TCTTSCEECSBCCSSSEEEEHHHHHHTT-SCC-TTSCTTCCCCSHHHHHH-HH--TTCEEEEEEEEEEEEEC---
T ss_pred CCCCCcccCccccceeEEEEHHHHHHcC-CCC-CcccccCchhHHHHHHH-Hh--cCCeEEEccCcEEEEEccCc
Confidence 0001111111222222357999999874 332 2345564 3444442 22 24689999999999986554
No 4
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=72.53 E-value=3.1 Score=40.44 Aligned_cols=109 Identities=12% Similarity=0.121 Sum_probs=62.6
Q ss_pred CCccEEEEeccCccccc----HHHHHhhcCCCC--cEEEEEEeCCCCCcc-CC-CCCCCceEEEEEe--ccchhhhhccc
Q 018842 108 SNRNLLAIPAGIKQKDN----VDAIVRKFLPEN--FTVILFHYDGDVNAW-RG-LDWSNKAIHIAAQ--NQTKWWFAKRF 177 (350)
Q Consensus 108 ~~k~Lv~~~VG~kqk~~----Vd~~v~kf~~~n--Fdv~LfhYDg~vd~W-~d-~~ws~~aiHv~a~--kqtKww~akRf 177 (350)
.++.-|++++=...... +++++..- ..+ +.|++.. ||..|+= .. ++-.. .+++... +..+ +...
T Consensus 65 ~p~vSVIIp~yN~~~~~L~~~l~Sl~~q~-~~~~~~EIIvVD-DgS~D~t~~~~~~~~~-~v~vi~~~~n~G~---~~A~ 138 (501)
T 2ffu_A 65 LPATSVVITFHNEARSALLRTVVSVLKKS-PPHLIKEIILVD-DYSNDPEDGALLGKIE-KVRVLRNDRREGL---MRSR 138 (501)
T ss_dssp CCCEEEEEEESSCCHHHHHHHHHHHHHHS-CGGGEEEEEEEE-CSCSCTHHHHGGGGBT-TEEEEECSSCCHH---HHHH
T ss_pred CCCEEEEEEeCcCcHHHHHHHHHHHHhhC-chhhceeEEEEE-CCCCchHHHHHHhcCC-CEEEEECCCCcCH---HHHH
Confidence 45667777775443312 45555442 233 4666554 6665532 11 11111 2333221 2221 1111
Q ss_pred cCccccCCccEEEEecCcccCCCCCHHHHHHHHHHhCCccccCCc
Q 018842 178 LHPDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPAL 222 (350)
Q Consensus 178 LHPdiv~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPAL 222 (350)
..-=-.+..|||++.|+|..++.-.++++++.+++..-.+..|.+
T Consensus 139 N~G~~~A~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~vv~~~~ 183 (501)
T 2ffu_A 139 VRGADAAQAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVVSPII 183 (501)
T ss_dssp HHHHHHCCSSEEEECCSSEEECTTCHHHHHHHHHHCTTEEEEEEE
T ss_pred HHHHHhcCCCEEEEECCCcccCccHHHHHHHHHHhCCCeEEEeee
Confidence 111123678999999999999999999999999988777777765
No 5
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=69.65 E-value=3.5 Score=34.72 Aligned_cols=109 Identities=15% Similarity=0.145 Sum_probs=60.4
Q ss_pred CCccEEEEeccCcccccHHHHHhhcC---CCCcEEEEEEeCCCCCccCCC--CCC--CceEEEE-EeccchhhhhccccC
Q 018842 108 SNRNLLAIPAGIKQKDNVDAIVRKFL---PENFTVILFHYDGDVNAWRGL--DWS--NKAIHIA-AQNQTKWWFAKRFLH 179 (350)
Q Consensus 108 ~~k~Lv~~~VG~kqk~~Vd~~v~kf~---~~nFdv~LfhYDg~vd~W~d~--~ws--~~aiHv~-a~kqtKww~akRfLH 179 (350)
.++.-|++|+=.. ...+.+.++-.. ..+|.|++.. ||..|+=.++ ++. ..-+++. ..++.+=.-.+.=+
T Consensus 4 ~p~vsViIp~yn~-~~~l~~~l~Sl~~q~~~~~eiIvvD-d~S~d~t~~~~~~~~~~~~~i~~i~~~n~G~~~a~N~g~- 80 (240)
T 3bcv_A 4 IPKVSVIVPIYNV-EKYLDQCVQALLAQTLSDIEIILID-DESPDNCPKICDDYAAQYPNIKVIHKKNAGLGMACNSGL- 80 (240)
T ss_dssp CCSEEEEEEESSC-TTTHHHHHHHHHTCSSSSEEEEEEE-CCCSSSHHHHHHHHHHHCSSEEEEECCCCCHHHHHHHHH-
T ss_pred CCcEEEEEecCCC-HHHHHHHHHHHHhCcCCCeEEEEEE-CCCCcCHHHHHHHHHhhCCCEEEEECCCCChHHHHHHHH-
Confidence 3556677777433 344444444321 2467777654 6665542110 000 0112322 22332211111111
Q ss_pred ccccCCccEEEEecCcccCCCCCHHHHHHHHHHhCCccccCC
Q 018842 180 PDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPA 221 (350)
Q Consensus 180 Pdiv~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPA 221 (350)
-.+..|||++.|+|..++...++++++.+++.+.++...+
T Consensus 81 --~~a~g~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~v~~~ 120 (240)
T 3bcv_A 81 --DVATGEYVAFCDSDDYVDSDMYMTMYNVAQKYTCDAVFTG 120 (240)
T ss_dssp --HHCCSSEEEECCTTCCCCTTHHHHHHHHHHHHTCSEEEC-
T ss_pred --HHcCCCEEEEECCCCcCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 1357899999999999999999999999998777776554
No 6
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=66.37 E-value=5.4 Score=38.54 Aligned_cols=197 Identities=12% Similarity=0.069 Sum_probs=99.4
Q ss_pred CCccEEEEeccCcccccHHHHHhhcC------CCCcEEEEEEeCCCCCccCCC--CCCCceEEEE------Eeccchhhh
Q 018842 108 SNRNLLAIPAGIKQKDNVDAIVRKFL------PENFTVILFHYDGDVNAWRGL--DWSNKAIHIA------AQNQTKWWF 173 (350)
Q Consensus 108 ~~k~Lv~~~VG~kqk~~Vd~~v~kf~------~~nFdv~LfhYDg~vd~W~d~--~ws~~aiHv~------a~kqtKww~ 173 (350)
.++..|++|+=.. ..++..+|+... ..+|.|++.. ||++|+=.++ +...+.++.. ..++.|-.-
T Consensus 93 ~p~vSVVIP~yNe-~~~l~~~l~sl~~~l~~~~~~~EIIVVD-DgStD~T~~i~~~~~~~v~~~~~~~i~~~~n~G~g~A 170 (387)
T 3f1y_A 93 GLTVSAVLPSRNV-ADTVGGIIDEIHALNERAPLIDQILVVD-ADSEDGTAGVAASHGAEVYSENELMSGYGDAHGKGDA 170 (387)
T ss_dssp TCCEEEEEEESSC-TTTHHHHHHHHHHHHHHSCCCSEEEEEE-CSCSSSHHHHHHHTTCEEEEGGGTTGGGCSCCSHHHH
T ss_pred CCeEEEEEEcCCC-HHHHHHHHHHHHHHHhcCCCCeEEEEEc-CcCCccHHHHHHHhCchhcccceeEecCCccCCHHHH
Confidence 5678889998554 455555554331 2468877665 7776653321 1111111110 013333222
Q ss_pred hccccCccccCCccEEEEecCccc-CCCCCHHHHHHHHHHh-CCccccCCcCCCCCceeeeeeeeecCcccce----eee
Q 018842 174 AKRFLHPDVVSNYDYIFLWDEDLG-VENFDPRRYLEIVKSE-GFEISQPALDPNSTEIHHKFTIRARTKKFHR----RVY 247 (350)
Q Consensus 174 akRfLHPdiv~~YDYIflwDDDL~-vd~f~i~ryf~Ivr~~-gLeISQPALd~~s~~i~h~iT~r~~~~~vHr----~~~ 247 (350)
.+.=+ -.+.+|||++.|.|.. ++...+.++++.+.+. +..+......... ....... +.....+-+ .++
T Consensus 171 ~n~G~---~~A~gd~i~~lDaD~~~~~p~~L~~l~~~l~~~p~~d~v~G~~~~~~-~~~~~~~-~~~~g~v~~~~~~~l~ 245 (387)
T 3f1y_A 171 MWRAL---SVTRGDLVLYIDADTRDFRPQLAYGVLGPVLEVPGVRFVKAAYRRPF-RKGESIE-EDGGGRVTELTAKPLF 245 (387)
T ss_dssp HHHHT---TTCCSSEEEECCTTCSSCCTHHHHTTHHHHHHSTTCCEEEEEEECC--------C-CBCCSHHHHHTHHHHH
T ss_pred HHHHH---HhcCCCEEEEEcCCCCcCCHHHHHHHHHHHHHCCCceEEEEeecccc-ccccccc-cccCCchhhhhHHHHH
Confidence 22212 1357999999999999 8999999999988775 5666655432110 0000000 101110100 000
Q ss_pred cccCCccCCCCCCCCCccceEEEeccccChhHHHHhhhhhccCCcceehhhhhhh-hhhcCCCCCcEEEEeeeeEEeec
Q 018842 248 DLRGSVKCTNISEGPPCTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDMKLG-YCAQGDRTKNVGIIDSEYVVHQG 325 (350)
Q Consensus 248 ~~~g~~~C~~~~~~ppcT~FVEiMAPVFSR~Awrcvw~miqNdlvhGWGLDf~w~-~ca~g~~~~kiGVVDa~~V~H~~ 325 (350)
..--+.-+ . -.-+.+||. +|+|++++.+ . ...|||.|..+. +++.-..-++|.=|+-.+..|..
T Consensus 246 ~~~~~~l~--~-~~d~~sG~~-----a~rR~~l~~i-~-----f~~gyg~e~ell~~~~~~~G~~~I~eVpi~~~~h~~ 310 (387)
T 3f1y_A 246 NLFYPELA--G-FVQPLAGEF-----VADRELFCSI-P-----FLTGYAVETGIMIDVLKKVGLGAMAQVDLGERQNRH 310 (387)
T ss_dssp HHHCGGGT--T-CSCTTCSCE-----EEEHHHHTTS-C-----EECSTTHHHHHHHHHHHHHCGGGEEEEEEEECCCCC
T ss_pred HHHhHhhc--c-ccccccccE-----EEEHHHHHhC-C-----CCCCcchHHHHHHHHHHhcCCCeEEEEecceeecCC
Confidence 00000000 0 011233432 5899999876 2 237899886654 33221112458888888877763
No 7
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=59.84 E-value=18 Score=37.39 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=31.1
Q ss_pred CccEEEEecCcccCCCCCHHHHHHHHHHh-CCccccCC
Q 018842 185 NYDYIFLWDEDLGVENFDPRRYLEIVKSE-GFEISQPA 221 (350)
Q Consensus 185 ~YDYIflwDDDL~vd~f~i~ryf~Ivr~~-gLeISQPA 221 (350)
.+|||+|.|+|..++...++++++.++.. ...+..|.
T Consensus 268 ~~dyIlfLD~D~~~~pd~L~~ll~~l~~~~~~~~vg~~ 305 (657)
T 4fix_A 268 DCQQILFMDDDIRLEPDSILRVLAMHRFAKAPMLVGGQ 305 (657)
T ss_dssp CCSEEEEECSSEEECTHHHHHHHHHHHHBSSCCEEEEE
T ss_pred CCCEEEEECCCCccChhHHHHHHHHHHhCCCcEEEEeE
Confidence 69999999999999999999999999876 34455554
No 8
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=54.25 E-value=31 Score=34.45 Aligned_cols=211 Identities=12% Similarity=0.061 Sum_probs=100.2
Q ss_pred CCccEEEEeccCccccc----HHHHHhhcCCCC--cEEEEEEeCCCCCcc-CC-CC-C--CCceEEEEEe--ccchhhhh
Q 018842 108 SNRNLLAIPAGIKQKDN----VDAIVRKFLPEN--FTVILFHYDGDVNAW-RG-LD-W--SNKAIHIAAQ--NQTKWWFA 174 (350)
Q Consensus 108 ~~k~Lv~~~VG~kqk~~----Vd~~v~kf~~~n--Fdv~LfhYDg~vd~W-~d-~~-w--s~~aiHv~a~--kqtKww~a 174 (350)
.++.-|++++=...... ++++++.- ..+ +.|+|.. ||..|+- .+ ++ + ....+++... +..+=.-.
T Consensus 111 ~P~vSVIIp~yNe~~~~L~~~L~Sll~qt-~~~~~~EIIVVD-DgS~D~tl~~~l~~~~~~~~~v~vi~~~~n~G~~~A~ 188 (570)
T 2d7i_A 111 LPNTSIIIPFHNEGWSSLLRTVHSVLNRS-PPELVAEIVLVD-DFSDREHLKKPLEDYMALFPSVRILRTKKREGLIRTR 188 (570)
T ss_dssp CCCEEEEEEESSCCHHHHHHHHHHHHHHS-CGGGEEEEEEEE-CSCCCGGGTHHHHHHHTTSTTEEEEECSSCCCHHHHH
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHhcC-CccCcEEEEEEE-CCCCcHHHHHHHHHHHHhCCeEEEEECCCCCCHHHHH
Confidence 56677888875554122 45555442 234 3666554 6665544 11 10 0 0012444332 22221111
Q ss_pred ccccCccccCCccEEEEecCcccCCCCCHHHHHHHHHHhCCccccCCcCCCCC-ceeeeee----eeec-Ccccc-eeee
Q 018842 175 KRFLHPDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDPNST-EIHHKFT----IRAR-TKKFH-RRVY 247 (350)
Q Consensus 175 kRfLHPdiv~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~s~-~i~h~iT----~r~~-~~~vH-r~~~ 247 (350)
..=+ -.+..|||++.|+|..++...++++++.+++..-.+..|.++.-.. .+.+... .+.. ...++ +++.
T Consensus 189 N~G~---~~A~gd~i~fLD~D~~~~p~~L~~ll~~l~~~~~~vv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (570)
T 2d7i_A 189 MLGA---SVATGDVITFLDSHCEANVNWLPPLLDRIARNRKTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEMYYKRIP 265 (570)
T ss_dssp HHHH---HHCCSSEEEECCSSEEECTTCSHHHHHHHHHCTTEEEEEEEEEECTTTCCEECCTTSSCEEEECTTCCEEEEC
T ss_pred HHHH---HhcCCCEEEEEcCCccccccHHHHHHHHHHhCCCEEEeeeeeccCCCchhhccccCCcccccccccccccccc
Confidence 1111 1367899999999999999999999999987654455554321100 0111000 0000 00000 0000
Q ss_pred cccCCccCCCCCCCCCccceEEEeccccChhHHHHhhhhhccCCccee-hhhhhhhhhhcCCCCCcEEEEeeeeEEeecc
Q 018842 248 DLRGSVKCTNISEGPPCTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGW-GMDMKLGYCAQGDRTKNVGIIDSEYVVHQGI 326 (350)
Q Consensus 248 ~~~g~~~C~~~~~~ppcT~FVEiMAPVFSR~Awrcvw~miqNdlvhGW-GLDf~w~~ca~g~~~~kiGVVDa~~V~H~~~ 326 (350)
... ...-. ....+..+.++-.-+=+|+|++++.+= .+. +....| |=|+-+..-+. ..+.+|.++....|.|...
T Consensus 266 ~~~-~~~~~-~~~~~~~~~~~~g~~~~irr~~~~~iG-gfD-e~~~~~g~ED~dl~~Rl~-~~G~~i~~~p~~~v~H~~r 340 (570)
T 2d7i_A 266 IPP-ELQKA-DPSDPFESPVMAGGLFAVDRKWFWELG-GYD-PGLEIWGGEQYEISFKVW-MCGGRMEDIPCSRVGHIYR 340 (570)
T ss_dssp CCT-TTCCS-STTSCEECSSCCSSSEEEEHHHHHHTT-SSC-TTCCSSSSHHHHHHHHHH-HTTCEEEEEEEEEEEECCC
T ss_pred cch-hhhcc-CCCcceecccccceEEEEEHHHHHhcC-CCC-CcccccCcchHHHHHHHH-hCCCeEEEccCeEEEEEcc
Confidence 000 00000 001111112222223358899999874 343 345566 44544443222 1356999999999999754
Q ss_pred CC
Q 018842 327 QT 328 (350)
Q Consensus 327 pt 328 (350)
.+
T Consensus 341 ~~ 342 (570)
T 2d7i_A 341 KY 342 (570)
T ss_dssp SS
T ss_pred cc
Confidence 43
No 9
>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15 PDB: 1omx_A* 1on6_A* 1on8_A*
Probab=40.85 E-value=12 Score=35.63 Aligned_cols=101 Identities=12% Similarity=0.123 Sum_probs=61.9
Q ss_pred CccEEEEeccCcccccHHHHHhhcCC-CCcEEEEEEeCCC----CC-ccCCCCCCCceEEEEEeccchhhhhccccCccc
Q 018842 109 NRNLLAIPAGIKQKDNVDAIVRKFLP-ENFTVILFHYDGD----VN-AWRGLDWSNKAIHIAAQNQTKWWFAKRFLHPDV 182 (350)
Q Consensus 109 ~k~Lv~~~VG~kqk~~Vd~~v~kf~~-~nFdv~LfhYDg~----vd-~W~d~~ws~~aiHv~a~kqtKww~akRfLHPdi 182 (350)
.++=+++-+-. ......++|+.... ..-+=++..+.+. ++ .|..+ +...+.|....+.+=-+-.||+. .-
T Consensus 28 ~~FTvvi~ty~-R~~~L~~lv~~~~~~~~v~~IvVvWn~~~~~pp~~~~~~~--~~~~vpv~v~~~~~nsLnnRF~p-~~ 103 (293)
T 1omz_A 28 DSFTLIMQTYN-RTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSL--GPHPIPVIFKPQTANKMRNRLQV-FP 103 (293)
T ss_dssp TCEEEEEEESS-CHHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHHT--CCCSSCEEEEECSSCCGGGGGSC-CT
T ss_pred CceEEEEEeec-ccHHHHHHHHHHhcCCCCCeEEEEeCCCCCCCChhhcccc--CCCCccEEEEeCCCCchhhccCC-Cc
Confidence 34555554433 34556666765543 4566666666653 12 24333 11233444455544446778863 33
Q ss_pred cCCccEEEEecCcccCCCCCHHHHHHHHHHh
Q 018842 183 VSNYDYIFLWDEDLGVENFDPRRYLEIVKSE 213 (350)
Q Consensus 183 v~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~ 213 (350)
--+-|+||..|||+.++..+++.=|++-+++
T Consensus 104 ~i~T~AVLslDDDv~l~~~el~faF~vWr~~ 134 (293)
T 1omz_A 104 EVETNAVLMVDDDTLISAQDLVFAFSIWQQF 134 (293)
T ss_dssp TCCSSEEEEECTTEEECHHHHHHHHHHHTTS
T ss_pred cCCcCEEEEEcCCCCCCHHHHHHHHHHHHHC
Confidence 4678999999999999999999988888754
No 10
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=38.73 E-value=6.5 Score=40.32 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=0.0
Q ss_pred cCCccEEEEecCcccCCCCCHHHHHHHHHHhCCccc
Q 018842 183 VSNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEIS 218 (350)
Q Consensus 183 v~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeIS 218 (350)
.+..|||++.|+|-.++...++++++.++..++-++
T Consensus 81 ~A~gdyI~flD~Dd~~~p~~l~~l~~~l~~~d~v~~ 116 (729)
T 3l7i_A 81 EVETPYFMFLDADDELASYAITFYLEKFNNTDGLIA 116 (729)
T ss_dssp ------------------------------------
T ss_pred hccCCEEEEECCCCCCChhHHHHHHHHhcCCCEEEE
Confidence 367899999999999998888998888874444333
No 11
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=35.49 E-value=91 Score=30.74 Aligned_cols=108 Identities=16% Similarity=0.072 Sum_probs=57.6
Q ss_pred CCccEEEEeccCcccccHHHHHhhcC---CCCcEEEEEEeCCCCCccCC-C-CC---CCceEEEEEeccchhhhhccccC
Q 018842 108 SNRNLLAIPAGIKQKDNVDAIVRKFL---PENFTVILFHYDGDVNAWRG-L-DW---SNKAIHIAAQNQTKWWFAKRFLH 179 (350)
Q Consensus 108 ~~k~Lv~~~VG~kqk~~Vd~~v~kf~---~~nFdv~LfhYDg~vd~W~d-~-~w---s~~aiHv~a~kqtKww~akRfLH 179 (350)
.++.-|++++= +....+.+.|+-.. -.+|.|++.. ||..|+=.+ + ++ ..+...+...++++-.....-+
T Consensus 374 ~~~vsiii~~y-n~~~~l~~~l~s~~~q~~~~~eiivvd-d~S~d~t~~~~~~~~~~~~~i~~~~~~n~G~~~a~n~g~- 450 (625)
T 2z86_A 374 VPLVSIYIPAY-NCSKYIVRCVESALNQTITDLEVCICD-DGSTDDTLRILQEHYANHPRVRFISQKNKGIGSASNTAV- 450 (625)
T ss_dssp SCSEEEEEEES-SCTTTHHHHHHHHHSSSCCSEEEEEEE-ESCSSSHHHHHHHHHTTCTTEEEEEECCCCHHHHHHHHH-
T ss_pred CCeEEEEEeCC-CCHHHHHHHHHHHHhCcCCCeEEEEEE-CcCChhHHHHHHHHHhhCCcEEEEeCCCCCHHHHHHHHH-
Confidence 45566666663 33455555444331 2578887765 455443111 1 00 0122233333443322222212
Q ss_pred ccccCCccEEEEecCcccCCCCCHHHHHHHHHHh-CCccccC
Q 018842 180 PDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSE-GFEISQP 220 (350)
Q Consensus 180 Pdiv~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~-gLeISQP 220 (350)
-.+..|||++.|+|..++...++++++.+.+. +..+..+
T Consensus 451 --~~a~g~~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~ 490 (625)
T 2z86_A 451 --RLCRGFYIGQLDSDDFLEPDAVELCLDEFRKDLSLACVYT 490 (625)
T ss_dssp --HHCCSSEEEECCTTCEECTTHHHHHHHHHHHCTTCSEEEE
T ss_pred --HhcCCCEEEEECCCcccChhHHHHHHHHHHhCCCeeEEEe
Confidence 13578999999999999888888888877543 3444333
No 12
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=33.55 E-value=26 Score=30.75 Aligned_cols=29 Identities=10% Similarity=0.242 Sum_probs=26.7
Q ss_pred CCccEEEEecCcccCCCCCHHHHHHHHHH
Q 018842 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKS 212 (350)
Q Consensus 184 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~ 212 (350)
+..|||+|.|.|..++.-.++++++.+++
T Consensus 73 A~g~yl~fln~D~~~~~~~l~~l~~~~~~ 101 (249)
T 2nxv_A 73 CKGRYVIFCHEDVELVDRGYDDLVAAIEA 101 (249)
T ss_dssp CCSSEEEEEETTEECSSCCHHHHHHHHHH
T ss_pred cCCCEEEEECCCcccCccHHHHHHHHHHh
Confidence 57899999999999999889999999887
No 13
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=30.48 E-value=17 Score=33.27 Aligned_cols=39 Identities=23% Similarity=0.492 Sum_probs=29.4
Q ss_pred hhccccCccccCCccEEEEecCc---ccCCCCCHHHHHHHHHHhCCccc
Q 018842 173 FAKRFLHPDVVSNYDYIFLWDED---LGVENFDPRRYLEIVKSEGFEIS 218 (350)
Q Consensus 173 ~akRfLHPdiv~~YDYIflwDDD---L~vd~f~i~ryf~Ivr~~gLeIS 218 (350)
.+.+||- -..|||+++.|-| ++.+..++-|++ +.|-+|.
T Consensus 44 lv~~Fl~---~~~~dhllfIDAD~~~I~FdPe~V~rLl----~~g~DVV 85 (203)
T 2c0n_A 44 ALDMFLE---MKDYDTLAFLDEDVVPIEIDFQKVEAKF----NEGYDVV 85 (203)
T ss_dssp HHHHHHH---CTTCCEEEEECTTEEEEECCHHHHHHHH----HHTCSEE
T ss_pred HHHHHHh---cCCCCEEEEEeCCCCccccCHHHHHHHH----hCCCCEE
Confidence 6667762 2569999999999 988888888887 4455554
Done!