Query 018843
Match_columns 350
No_of_seqs 129 out of 1216
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 06:54:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018843.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018843hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.9 1.4E-09 4.9E-14 86.1 6.3 69 239-307 35-105 (137)
2 3b5d_A Multidrug transporter E 98.2 4.4E-06 1.5E-10 63.6 8.6 67 240-306 36-104 (110)
3 3b5d_A Multidrug transporter E 98.1 3E-05 1E-09 58.9 10.9 68 84-152 37-105 (110)
4 2i68_A Protein EMRE; transmemb 98.0 2.1E-05 7.2E-10 62.0 8.0 69 82-151 35-104 (137)
5 3l1l_A Arginine/agmatine antip 38.4 42 0.0014 30.7 5.6 25 288-312 409-433 (445)
6 3rko_J NADH-quinone oxidoreduc 29.5 2.2E+02 0.0075 22.9 9.2 23 275-297 128-150 (184)
7 2b2h_A AMT-1, ammonium transpo 22.9 4.3E+02 0.015 24.0 19.1 56 113-173 230-286 (399)
8 3l1l_A Arginine/agmatine antip 11.9 7.6E+02 0.026 21.9 9.2 12 158-169 412-423 (445)
9 2jwa_A Receptor tyrosine-prote 10.4 1.4E+02 0.0047 17.9 1.7 24 290-313 21-44 (44)
10 3kcu_A Probable formate transp 9.9 8.1E+02 0.028 20.9 9.1 198 105-312 40-285 (285)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.92 E-value=1.4e-09 Score=86.10 Aligned_cols=69 Identities=12% Similarity=0.101 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHH-HHhhccchhHHHHH-HHHHHHHHHHHHHHccCCCCchhhHHHHHHHhhhhhhhcccc
Q 018843 239 SCVFGLLISFFGF-AARKAISATAFTVT-GVVNKFLTVVINVLIWDKHASPFGLICLLVTIAGGVLYQQSV 307 (350)
Q Consensus 239 ~~~~~~~~~~~~~-~~i~~~sa~~~s~~-~~l~~v~~~~ls~~~~~e~~t~~~~~G~~li~~g~~~~~~~~ 307 (350)
.++++++.+|..+ +++|+.++.....+ ..+.|++++++|+++|||++|+.+++|+.++++|+++.+..+
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3455555555555 89999999988777 899999999999999999999999999999999999987644
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.24 E-value=4.4e-06 Score=63.56 Aligned_cols=67 Identities=12% Similarity=0.107 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHH-HHhhccchhHHHHH-HHHHHHHHHHHHHHccCCCCchhhHHHHHHHhhhhhhhccc
Q 018843 240 CVFGLLISFFGF-AARKAISATAFTVT-GVVNKFLTVVINVLIWDKHASPFGLICLLVTIAGGVLYQQS 306 (350)
Q Consensus 240 ~~~~~~~~~~~~-~~i~~~sa~~~s~~-~~l~~v~~~~ls~~~~~e~~t~~~~~G~~li~~g~~~~~~~ 306 (350)
++.....++..+ .++|+.+...+... ..+.|+.++++|++++||++|+.+++|+.+++.|++..+..
T Consensus 36 ~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 344455555444 88999999998777 89999999999999999999999999999999999988654
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.12 E-value=3e-05 Score=58.94 Aligned_cols=68 Identities=10% Similarity=0.119 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhhhhhhccchhHHHHH-HhHHHHHHHHHHHHHcccCCCchhhHHHHHHHHHhhhhhcccC
Q 018843 84 AFVFYLAIFTNTNLLRHANVDTFIVF-RSLTPLLVALADTAFRRQPCPSRLTFLSLVIILGGAVGYVATD 152 (350)
Q Consensus 84 ~~~~~~~~~~~~~al~~~s~s~~~il-~~~~pi~v~ll~~l~~~e~~~~~~~~~~~~l~~~G~~l~~~~~ 152 (350)
.+++....++...++++.|.+.+..+ ..+.|+++.+++++++||++ +..++.++.+.++|+++....+
T Consensus 37 ~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~-s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRL-DLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHhcCC
Confidence 33455557778889999999999888 89999999999999999995 9999999999999999886544
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.99 E-value=2.1e-05 Score=62.04 Aligned_cols=69 Identities=10% Similarity=0.110 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhhhhhhccchhHHHHH-HhHHHHHHHHHHHHHcccCCCchhhHHHHHHHHHhhhhhccc
Q 018843 82 PAAFVFYLAIFTNTNLLRHANVDTFIVF-RSLTPLLVALADTAFRRQPCPSRLTFLSLVIILGGAVGYVAT 151 (350)
Q Consensus 82 ~~~~~~~~~~~~~~~al~~~s~s~~~il-~~~~pi~v~ll~~l~~~e~~~~~~~~~~~~l~~~G~~l~~~~ 151 (350)
...+++....++.+.++++.|++.+..+ ..+.|++++++++++++|++ +..++++++++++|+++....
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~l-s~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRL-DLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHhcC
Confidence 3344455567789999999999988888 89999999999999999995 899999999999999997654
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=38.41 E-value=42 Score=30.67 Aligned_cols=25 Identities=4% Similarity=-0.031 Sum_probs=17.9
Q ss_pred hhHHHHHHHhhhhhhhcccccCCCC
Q 018843 288 FGLICLLVTIAGGVLYQQSVTGPGA 312 (350)
Q Consensus 288 ~~~~G~~li~~g~~~~~~~~~~~~~ 312 (350)
..+.|..+++.|..+|.+.++++++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~~~ 433 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNRLHK 433 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccc
Confidence 3456888888899888876665443
No 6
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=29.50 E-value=2.2e+02 Score=22.86 Aligned_cols=23 Identities=9% Similarity=0.241 Sum_probs=17.9
Q ss_pred HHHHHccCCCCchhhHHHHHHHh
Q 018843 275 VINVLIWDKHASPFGLICLLVTI 297 (350)
Q Consensus 275 ~ls~~~~~e~~t~~~~~G~~li~ 297 (350)
-+|..++++..=+...+|..+..
T Consensus 128 ~iG~~Lft~Y~lpFElaSvlLLv 150 (184)
T 3rko_J 128 AVGITLFGPYVLAVELASMLLLA 150 (184)
T ss_dssp HHHHHHTTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888888888888887753
No 7
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=22.89 E-value=4.3e+02 Score=24.02 Aligned_cols=56 Identities=7% Similarity=-0.041 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHcccCCCchhhHHHHHHHHHhhhhhcccCcccchH-HHHHHHHHHHHHHHH
Q 018843 113 TPLLVALADTAFRRQPCPSRLTFLSLVIILGGAVGYVATDSGFTLT-AYSWAFAYLVTITTE 173 (350)
Q Consensus 113 ~pi~v~ll~~l~~~e~~~~~~~~~~~~l~~~G~~l~~~~~~~~~~~-G~~~~l~s~~~~a~~ 173 (350)
.-+..++++++. +| |+.. ...-..++|.+-+...-.-.+++ .++.++++.+.+-+.
T Consensus 230 g~l~~~~~~~~~--gk-~~~~--~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~ 286 (399)
T 2b2h_A 230 AGFVWMVIGWIK--GK-PGSL--GIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYLA 286 (399)
T ss_dssp HHHHHHHHHHHH--SC-CCHH--HHHHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--cC-CCHH--HHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHH
Confidence 334455566665 45 4554 23333444444444332233443 455555555443333
No 8
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=11.88 E-value=7.6e+02 Score=21.88 Aligned_cols=12 Identities=0% Similarity=-0.102 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 018843 158 TAYSWAFAYLVT 169 (350)
Q Consensus 158 ~G~~~~l~s~~~ 169 (350)
.|..+.+.+...
T Consensus 412 ~~~~~~~~g~~~ 423 (445)
T 3l1l_A 412 WSFVTLMVITAM 423 (445)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455554444443
No 9
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=10.36 E-value=1.4e+02 Score=17.93 Aligned_cols=24 Identities=4% Similarity=-0.182 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhhcccccCCCCC
Q 018843 290 LICLLVTIAGGVLYQQSVTGPGAA 313 (350)
Q Consensus 290 ~~G~~li~~g~~~~~~~~~~~~~~ 313 (350)
++-.+++.++..+|..+++.++++
T Consensus 21 vll~vi~~l~~~~~~RRR~~~~kK 44 (44)
T 2jwa_A 21 ILLVVVLGVVFGILIKRRQQKIRK 44 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCCCC
T ss_pred HHHHHHHHHHHHhheehhhhhccC
No 10
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A
Probab=9.90 E-value=8.1e+02 Score=20.94 Aligned_cols=198 Identities=14% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHcccCCCchhhHHHHHHHHHhhhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 018843 105 TFIVFRSLTPLLVALADTAFRRQPCPSRLTFLSLVIILGGAVGYVATDSGFTLTAYSWAFAYLVTITTEMVYIKHMVTNL 184 (350)
Q Consensus 105 ~~~il~~~~pi~v~ll~~l~~~e~~~~~~~~~~~~l~~~G~~l~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~ 184 (350)
.+...-.+.-++......-.-... +...+.++-+..-.|..++.....+.- .|..+...+.+ .||..-+.
T Consensus 40 lAG~~I~~g~~~~~~v~~~~~~~~-~g~~~ll~g~~F~vGL~lVvl~G~ELF-Tgn~l~~~a~~--------~~~is~~~ 109 (285)
T 3kcu_A 40 TAGVFISIAFVFYITATTGTGTMP-FGMAKLVGGICFSLGLILCVVCGADLF-TSTVLIVVAKA--------SGRITWGQ 109 (285)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSSC-HHHHHHHHHHHHTHHHHHHHHHTCCCT-TTTHHHHHHHT--------TTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcc-ccHHHHHHHHHHHHHHHHHHHhCcccc-ccchHHHHHHH--------cCCCCHHH
Q ss_pred CCCcchhHHHHhHHHHHHHHHHHHHhccHHH----HHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh-----
Q 018843 185 GLNTWGFVLYNNLLSLIISPFFWFLTGEYGE----VFAALVASAGSWFVPDVFFAVALSCVFGLLISFFGFAARK----- 255 (350)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~----- 255 (350)
-...|...+.-++++.++........+.... ..+.......+-.+..++-.++-...+....+...+.+.+
T Consensus 110 ~lr~W~~v~~gNliGal~~a~l~~~s~~~~~~~~~~~~~~~~ia~~K~~~~~~~~f~~GIlcN~lVclaVw~~~~ak~~~ 189 (285)
T 3kcu_A 110 LAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANGQWGLNVLQTADHKVHHTFIEAVCLGILANLMVCLAVWMSYSGRSLM 189 (285)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHTGGGTTTTHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTCCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhccchh
Q ss_pred -------------ccchhHHHHHHHHHHHHHHHHH-------------------------HHc-cCCCCchhhHHHHHHH
Q 018843 256 -------------AISATAFTVTGVVNKFLTVVIN-------------------------VLI-WDKHASPFGLICLLVT 296 (350)
Q Consensus 256 -------------~~sa~~~s~~~~l~~v~~~~ls-------------------------~~~-~~e~~t~~~~~G~~li 296 (350)
-.+--.+++.+...-..+.+.+ ++. .--+.+.-+++|..+.
T Consensus 190 gKi~~i~~pi~~Fv~~GfEH~VANm~~ip~gi~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~NlipvtlGNiIGG~~f 269 (285)
T 3kcu_A 190 DKAFIMVLPVAMFVASGFEHSIANMFMIPMGIVIRDFASPEFWTAVGSAPENFSHLTVMNFITDNLIPVTIGNIIGGGLL 269 (285)
T ss_dssp HHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCCHHHHHHTTCCGGGGTTCSHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCcchhhhhHHHHHHHHHhccccchHHHHhhcccccccCCccHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhcccccCCCC
Q 018843 297 IAGGVLYQQSVTGPGA 312 (350)
Q Consensus 297 ~~g~~~~~~~~~~~~~ 312 (350)
+...+++.+.|..+++
T Consensus 270 vgl~y~~~~~~~~~~~ 285 (285)
T 3kcu_A 270 VGLTYWVIYLRENDHH 285 (285)
T ss_dssp HHHHHHHHHCC-----
T ss_pred HHHHHHHHHcccccCC
Done!