Query 018843
Match_columns 350
No_of_seqs 129 out of 1216
Neff 9.2
Searched_HMMs 13730
Date Mon Mar 25 06:55:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018843.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018843hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 46.2 74 0.0054 26.1 12.9 16 291-306 189-204 (447)
2 d1u7ga_ f.44.1.1 (A:) Ammonium 37.8 1.1E+02 0.0079 25.6 18.9 51 115-168 240-291 (383)
3 d2r6gf1 e.70.1.1 (F:13-260) Ma 22.3 1.4E+02 0.01 23.2 7.7 53 78-135 3-55 (248)
4 d2e74g1 f.23.26.1 (G:9-35) Pet 12.9 48 0.0035 15.8 1.4 20 290-309 2-22 (27)
5 d1fftb2 f.17.2.1 (B:27-117) Cy 11.7 31 0.0022 22.6 0.7 20 293-312 28-47 (91)
6 d1iwga8 f.35.1.1 (A:513-566,A: 9.6 3.3E+02 0.024 20.1 6.9 30 271-300 95-124 (222)
7 d1sxma_ g.3.7.2 (A:) Noxiustox 9.3 25 0.0018 18.5 -0.4 13 338-350 15-27 (39)
8 d1otsa_ f.20.1.1 (A:) Clc chlo 4.0 9.1E+02 0.066 19.5 10.8 13 270-282 389-401 (444)
9 d1kqfb2 f.23.22.1 (B:246-290) 3.3 3E+02 0.022 15.1 1.8 29 281-309 8-36 (45)
10 d3dtub2 f.17.2.1 (B:30-129) Ba 3.1 2.8E+02 0.02 17.7 1.9 22 290-311 36-57 (100)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=46.18 E-value=74 Score=26.07 Aligned_cols=16 Identities=0% Similarity=-0.033 Sum_probs=7.3
Q ss_pred HHHHHHhhhhhhhccc
Q 018843 291 ICLLVTIAGGVLYQQS 306 (350)
Q Consensus 291 ~G~~li~~g~~~~~~~ 306 (350)
.+....+.+.+.+...
T Consensus 189 ~~~~~~~~~~~~~~~~ 204 (447)
T d1pw4a_ 189 PAFCAILVALFAFAMM 204 (447)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHHHhc
Confidence 3444444555444433
No 2
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=37.79 E-value=1.1e+02 Score=25.63 Aligned_cols=51 Identities=14% Similarity=-0.072 Sum_probs=23.3
Q ss_pred HHHHHHHHHHcccCCCchhhHHHHHHHHHhhhhhcccCcccchHH-HHHHHHHHH
Q 018843 115 LLVALADTAFRRQPCPSRLTFLSLVIILGGAVGYVATDSGFTLTA-YSWAFAYLV 168 (350)
Q Consensus 115 i~v~ll~~l~~~e~~~~~~~~~~~~l~~~G~~l~~~~~~~~~~~G-~~~~l~s~~ 168 (350)
.++.++...+.++|. +.... .-..++|.+-+.....-.++++ .+.+.++.+
T Consensus 240 ~~~~~~~~~~~~~k~-~~~~~--~nG~LaGLVaita~~~~v~p~~A~~iG~i~g~ 291 (383)
T d1u7ga_ 240 ILGWIFGEWALRGLP-SLLGA--CSGAIAGLVGVTPACGYIGVGGALIIGVVAGL 291 (383)
T ss_dssp HHHHHHHHHHHHSSC-CHHHH--HHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC-CHHHH--HHHhhhhhhhcccCccccchhhHHHHHhhccH
Confidence 333333334445553 55432 2344556665554433345543 555555443
No 3
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=22.34 E-value=1.4e+02 Score=23.19 Aligned_cols=53 Identities=11% Similarity=0.029 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHhHHHHHHHHHHHHHcccCCCchhhH
Q 018843 78 KKFLPAAFVFYLAIFTNTNLLRHANVDTFIVFRSLTPLLVALADTAFRRQPCPSRLTF 135 (350)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~al~~~s~s~~~il~~~~pi~v~ll~~l~~~e~~~~~~~~ 135 (350)
.||..++++..+..+.....+..-+...+. ...+.+.+..++++.+|. -..++
T Consensus 3 lK~~ll~l~~a~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~-~p~ky 55 (248)
T d2r6gf1 3 LKWSVLGLLGLLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKA-YAWRY 55 (248)
T ss_dssp CTHHHHHHHHHHHHHTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCC-TTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcchHHHHH----HHHHHHHheEEEEEccCc-cceeh
Confidence 467777887777766555554444444433 344556666677777774 33334
No 4
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=12.93 E-value=48 Score=15.78 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=10.9
Q ss_pred HHHHHHHhhhhhhhc-ccccC
Q 018843 290 LICLLVTIAGGVLYQ-QSVTG 309 (350)
Q Consensus 290 ~~G~~li~~g~~~~~-~~~~~ 309 (350)
++|.+++-+|.++|. +.+++
T Consensus 2 vlgli~~tl~glf~aayqqyk 22 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQQYK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred eeeehHHHHHHHHHHHHHHhc
Confidence 356666666666554 33443
No 5
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=11.70 E-value=31 Score=22.58 Aligned_cols=20 Identities=0% Similarity=-0.248 Sum_probs=11.8
Q ss_pred HHHHhhhhhhhcccccCCCC
Q 018843 293 LLVTIAGGVLYQQSVTGPGA 312 (350)
Q Consensus 293 ~~li~~g~~~~~~~~~~~~~ 312 (350)
+.+.+.|.+.|..-|+|+++
T Consensus 28 v~v~V~~~~~~~~~ryR~~~ 47 (91)
T d1fftb2 28 VVIPAILMAVGFAWKYRASN 47 (91)
T ss_dssp TTTHHHHHHHTTTTTTTTST
T ss_pred HHHHHHHHHHhhheeeeccC
Confidence 34456666667766666543
No 6
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=9.64 E-value=3.3e+02 Score=20.11 Aligned_cols=30 Identities=13% Similarity=0.123 Sum_probs=21.5
Q ss_pred HHHHHHHHHccCCCCchhhHHHHHHHhhhh
Q 018843 271 FLTVVINVLIWDKHASPFGLICLLVTIAGG 300 (350)
Q Consensus 271 v~~~~ls~~~~~e~~t~~~~~G~~li~~g~ 300 (350)
+..++.+..+.+.+++....+|.++.+.-.
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi~ 124 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIGLS 124 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhhhh
Confidence 445556777788999999888887744433
No 7
>d1sxma_ g.3.7.2 (A:) Noxiustoxin {Mexican scorpion (Centruroides noxius) [TaxId: 6878]}
Probab=9.28 E-value=25 Score=18.50 Aligned_cols=13 Identities=38% Similarity=0.447 Sum_probs=9.6
Q ss_pred cccccccccccCC
Q 018843 338 DQGKSLLGKHASA 350 (350)
Q Consensus 338 ~~~~~~~~~~~~~ 350 (350)
.|-|+.+|.+|||
T Consensus 15 ~pck~~~g~~ag~ 27 (39)
T d1sxma_ 15 KPCKELYGSSAGA 27 (39)
T ss_dssp TTHHHHSTTCCCE
T ss_pred hHHHHHhCccccc
Confidence 4567788888875
No 8
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=3.96 E-value=9.1e+02 Score=19.51 Aligned_cols=13 Identities=8% Similarity=0.220 Sum_probs=6.0
Q ss_pred HHHHHHHHHHccC
Q 018843 270 KFLTVVINVLIWD 282 (350)
Q Consensus 270 ~v~~~~ls~~~~~ 282 (350)
|+.++++..=+.|
T Consensus 389 Plta~vl~~Eltg 401 (444)
T d1otsa_ 389 PLTGIILVLEMTD 401 (444)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHC
Confidence 4444444444444
No 9
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=3.30 E-value=3e+02 Score=15.07 Aligned_cols=29 Identities=17% Similarity=0.356 Sum_probs=18.5
Q ss_pred cCCCCchhhHHHHHHHhhhhhhhcccccC
Q 018843 281 WDKHASPFGLICLLVTIAGGVLYQQSVTG 309 (350)
Q Consensus 281 ~~e~~t~~~~~G~~li~~g~~~~~~~~~~ 309 (350)
+....-+...+|+...+++.++-.....+
T Consensus 8 WKgv~Kpl~~~~~~~~~~~~~fHYv~vGP 36 (45)
T d1kqfb2 8 WKGALKPLAAAGFIATFAGLIFHYIGIGP 36 (45)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhheeCC
Confidence 34455566777888888887775544443
No 10
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.10 E-value=2.8e+02 Score=17.71 Aligned_cols=22 Identities=9% Similarity=0.040 Sum_probs=12.1
Q ss_pred HHHHHHHhhhhhhhcccccCCC
Q 018843 290 LICLLVTIAGGVLYQQSVTGPG 311 (350)
Q Consensus 290 ~~G~~li~~g~~~~~~~~~~~~ 311 (350)
..++.+++.+...|...|+|++
T Consensus 36 ~~~I~~~V~~~l~~~~~~~r~~ 57 (100)
T d3dtub2 36 IAAITIFVTLLILYAVWRFHEK 57 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHBTT
T ss_pred HHHHHHHHHHHHHHHhhhhhcc
Confidence 3445555666666665555433
Done!