BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018844
(349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KVN|X Chain X, Crystal Structure Of The Full-Length Autotransporter Esta
From Pseudomonas Aeruginosa
pdb|3KVN|A Chain A, Crystal Structure Of The Full-Length Autotransporter Esta
From Pseudomonas Aeruginosa
Length = 632
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 89/336 (26%), Positives = 133/336 (39%), Gaps = 66/336 (19%)
Query: 28 MIVFGDSSVDTGNNNFIPTIARCNFEPYGRDFPGGIPTGRFCN--GRLSTDFLSESFGLK 85
++VFGDS D G P +P G P G T RF N G + E FG
Sbjct: 18 LVVFGDSLSDAGQ---FP-------DPAG---PAG-STSRFTNRVGPTYQNGSGEIFG-- 61
Query: 86 PTIPAYLDPAYSIA--DFATGVCFASSATGF---DNATAGVLQVIPLWKEL--------E 132
PT P L IA D A ++ G +N G + ++ + E
Sbjct: 62 PTAPMLLGNQLGIAPGDLAASTSPVNAQQGIADGNNWAVGGYRTDQIYDSITAANGSLIE 121
Query: 133 FYKEYQRKLRAYLGVGKANKVIG---EALYTVSLGTNDFIENYYAIPGGRQSQFTVQEYQ 189
R YL V +A + +G ALY ++ G NDF++ GR VQ Q
Sbjct: 122 RDNTLLRSRDGYL-VDRARQGLGADPNALYYITGGGNDFLQ-------GRILN-DVQAQQ 172
Query: 190 DFLLGIAEDFLKKLYNLGARKISVTGIAPMGCLPVERTTDFMNNDYGCNEE--HNNVALE 247
G D ++ L GAR I V + +G P +G + + ++
Sbjct: 173 --AAGRLVDSVQALQQAGARYIVVWLLPDLGLTPAT---------FGGPLQPFASQLSGT 221
Query: 248 FNGKMMSLLSKLNKELPGFRIVFADGYNILLDLIKKPSKFGFEVAD---MGCCGSGTFET 304
FN ++ + LS+ + I +L + + P+ FG AD +G C SG T
Sbjct: 222 FNAELTAQLSQAGANVIPLNIPL-----LLKEGMANPASFGL-AADQNLIGTCFSGNGCT 275
Query: 305 GFLCTDLFTCT-DANKFVFWDSVHPSEKANKIIANY 339
+ T D +K +F DSVHP+ ++IA+Y
Sbjct: 276 MNPTYGINGSTPDPSKLLFNDSVHPTITGQRLIADY 311
>pdb|4GIN|A Chain A, Crystal Structure Of The Mutb R284c Mutant From Crystals
Soaked With The Inhibitor Deoxynojirimycin
Length = 584
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Query: 101 FATGVCFASSATGFDNATAGVLQVIPLWKELEFYKEYQRKLRAYLGVGKAN-KVIGEAL- 158
FA + A S+ A V P WK FY+ Y R + G G + K + E L
Sbjct: 7 FAASLMLAFSSVSSVRAEEAVKPGAPWWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKLD 66
Query: 159 YTVSLGTND-FIENYYAIPGGRQSQFTVQEYQDFL--LGIAEDFLKKLYNLGARKISV 213
Y LG + +I +YA P + + + +Y++ + G EDF + + L R + +
Sbjct: 67 YLKGLGIDAIWINPHYASPNT-DNGYDISDYREVMKEYGTMEDFDRLMAELKKRGMRL 123
>pdb|3GBD|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum
pdb|3GBE|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum In Complex With The Inhibitor
Deoxynojirimycin
Length = 558
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 124 VIP-LWKELEFYKEYQRKLRAY--LGVGKANKVIGEALYTVSLGTND-FIENYYAIPGGR 179
IP WKE FY+ Y R + G+G N +I + Y +LG + +I +Y P
Sbjct: 1 TIPKWWKEAVFYQVYPRSFKDTNGDGIGDINGIIEKLDYLKALGIDAIWINPHYDSPNT- 59
Query: 180 QSQFTVQEYQDFL--LGIAEDFLKKLYNLGARKISV 213
+ + +++Y+ + G EDF + + + R + +
Sbjct: 60 DNGYDIRDYRKIMKEYGTMEDFDRLISEMKKRNMRL 95
>pdb|3LQZ|A Chain A, Crystal Structure Of Hla-dp2
Length = 181
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 13 IQILRTTGANTKVPAMIVFGDSSVDTGNNNFIPTIARCNFEPYGRDFPGGIPTGRFCNGR 72
IQ T A P + VF V+ G P C+ + + FP + CNG
Sbjct: 74 IQRSNHTQATNDPPEVTVFPKEPVELGQ----PNTLICHIDKF---FPPVLNVTWLCNGE 126
Query: 73 LSTDFLSESFGLKPT 87
L T+ ++ES L T
Sbjct: 127 LVTEGVAESLFLPRT 141
>pdb|4H2C|A Chain A, Trehalulose Synthase Mutb R284c Mutant
Length = 557
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 126 PLWKELEFYKEYQRKLRAYLGVGKAN-KVIGEAL-YTVSLGTND-FIENYYAIPGGRQSQ 182
P WK FY+ Y R + G G + K + E L Y LG + +I +YA P +
Sbjct: 5 PWWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNT-DNG 63
Query: 183 FTVQEYQDFL--LGIAEDFLKKLYNLGARKISV 213
+ + +Y++ + G EDF + + L R + +
Sbjct: 64 YDISDYREVMKEYGTMEDFDRLMAELKKRGMRL 96
>pdb|4GI6|A Chain A, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI6|B Chain B, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI8|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI8|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI9|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GI9|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GIA|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
pdb|4GIA|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
Length = 557
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 126 PLWKELEFYKEYQRKLRAYLGVGKAN-KVIGEAL-YTVSLGTND-FIENYYAIPGGRQSQ 182
P WK FY+ Y R + G G + K + E L Y LG + +I +YA P +
Sbjct: 5 PWWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNT-DNG 63
Query: 183 FTVQEYQDFL--LGIAEDFLKKLYNLGARKISV 213
+ + +Y++ + G EDF + + L R + +
Sbjct: 64 YDISDYREVMKEYGTMEDFDRLMAELKKRGMRL 96
>pdb|2PWF|A Chain A, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|B Chain B, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|C Chain C, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|D Chain D, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
Length = 556
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 126 PLWKELEFYKEYQRKLRAYLGVGKAN-KVIGEAL-YTVSLGTND-FIENYYAIPGGRQSQ 182
P WK FY+ Y R + G G + K + E L Y LG + +I +YA P +
Sbjct: 4 PWWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNT-DNG 62
Query: 183 FTVQEYQDFL--LGIAEDFLKKLYNLGARKISV 213
+ + +Y++ + G EDF + + L R + +
Sbjct: 63 YDISDYREVMKEYGTMEDFDRLMAELKKRGMRL 95
>pdb|1ZJA|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJA|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJB|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|1ZJB|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|2PWD|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
pdb|2PWD|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
Length = 557
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 126 PLWKELEFYKEYQRKLRAYLGVGKAN-KVIGEAL-YTVSLGTND-FIENYYAIPGGRQSQ 182
P WK FY+ Y R + G G + K + E L Y LG + +I +YA P +
Sbjct: 5 PWWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNT-DNG 63
Query: 183 FTVQEYQDFL--LGIAEDFLKKLYNLGARKISV 213
+ + +Y++ + G EDF + + L R + +
Sbjct: 64 YDISDYREVMKEYGTMEDFDRLMAELKKRGMRL 96
>pdb|2PWG|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWG|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWH|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
pdb|2PWH|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
Length = 556
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 126 PLWKELEFYKEYQRKLRAYLGVGKAN-KVIGEAL-YTVSLGTND-FIENYYAIPGGRQSQ 182
P WK FY+ Y R + G G + K + E L Y LG + +I +YA P +
Sbjct: 4 PWWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNT-DNG 62
Query: 183 FTVQEYQDFL--LGIAEDFLKKLYNLGARKISV 213
+ + +Y++ + G EDF + + L R + +
Sbjct: 63 YDISDYREVMKEYGTMEDFDRLMAELKKRGMRL 95
>pdb|2PWE|A Chain A, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
pdb|2PWE|B Chain B, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
Length = 556
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 126 PLWKELEFYKEYQRKLRAYLGVGKAN-KVIGEAL-YTVSLGTND-FIENYYAIPGGRQSQ 182
P WK FY+ Y R + G G + K + E L Y LG + +I +YA P +
Sbjct: 4 PWWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNT-DNG 62
Query: 183 FTVQEYQDFL--LGIAEDFLKKLYNLGARKISV 213
+ + +Y++ + G EDF + + L R + +
Sbjct: 63 YDISDYREVMKEYGTMEDFDRLMAELKKRGMRL 95
>pdb|3GR1|A Chain A, Periplamic Domain Of The T3ss Inner Membrane Protein Prgh
From S.Typhimurium (Fragment 170-392)
pdb|3GR1|B Chain B, Periplamic Domain Of The T3ss Inner Membrane Protein Prgh
From S.Typhimurium (Fragment 170-392)
pdb|3GR1|C Chain C, Periplamic Domain Of The T3ss Inner Membrane Protein Prgh
From S.Typhimurium (Fragment 170-392)
pdb|3GR1|D Chain D, Periplamic Domain Of The T3ss Inner Membrane Protein Prgh
From S.Typhimurium (Fragment 170-392)
pdb|3GR1|E Chain E, Periplamic Domain Of The T3ss Inner Membrane Protein Prgh
From S.Typhimurium (Fragment 170-392)
pdb|3GR1|F Chain F, Periplamic Domain Of The T3ss Inner Membrane Protein Prgh
From S.Typhimurium (Fragment 170-392)
pdb|3GR1|G Chain G, Periplamic Domain Of The T3ss Inner Membrane Protein Prgh
From S.Typhimurium (Fragment 170-392)
pdb|3GR1|H Chain H, Periplamic Domain Of The T3ss Inner Membrane Protein Prgh
From S.Typhimurium (Fragment 170-392)
Length = 227
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 153 VIGEALYTVS-LGTNDFIENYYAIPGGRQSQFTVQEYQDFLLG 194
VI AL V L F+++YY GGR QF ++ D+L G
Sbjct: 161 VIQGALDDVEILRARQFVDSYYRTWGGRYVQFAIELKDDWLKG 203
>pdb|2GTQ|A Chain A, Crystal Structure Of Aminopeptidase N From Human Pathogen
Neisseria Meningitidis
Length = 867
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 240 EHNNVALEFNGKMMSLLSKLNKELPGFRIVFADGYNILLDLIKKPSKFGFEVA 292
+H +LE K SL+ ++ +P F GY + D + + +F +VA
Sbjct: 768 QHPKFSLENPNKARSLIGSFSRNVPHFHAEDGSGYRFIADKVIEIDRFNPQVA 820
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,931,886
Number of Sequences: 62578
Number of extensions: 493248
Number of successful extensions: 882
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 878
Number of HSP's gapped (non-prelim): 16
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)