BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>018848
MVSTLGKNSEFAEVNIYNEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYID
VCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVSNVMAAELVRVARNESKGEPERLRF
SYYTAGTGGAGPTILATSFLLLGEEVVAYNKGEEITLEPYSGMLSVDFGKGIGRKDVFLL
NLPEVRSAREVLGVPTVSARFGTAPFFWNWGMVTMQRLFPAEYLRDRSKVQQLVQLFDPV
VRAFDGIAGERVSMRVDLECTDGRNTVGIFSHRRLSVSVGTAIAAFVLAVLEGATQPGVW
FPEEPEGIAIEAREVLLKRASQGTINFVMNKAPWMVETEPKELGLGIYI

High Scoring Gene Products

Symbol, full name Information P value
AT1G50450 protein from Arabidopsis thaliana 4.4e-139
PFL_3454
Saccharopine dehydrogenase
protein from Pseudomonas protegens Pf-5 0.00032

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  018848
        (349 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2008041 - symbol:AT1G50450 species:3702 "Arabi...  1361  4.4e-139  1
UNIPROTKB|Q4KB25 - symbol:PFL_3454 "Saccharopine dehydrog...   117  0.00032   1


>TAIR|locus:2008041 [details] [associations]
            symbol:AT1G50450 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016491
            "oxidoreductase activity" evidence=IEA] [GO:0055114
            "oxidation-reduction process" evidence=IEA] [GO:0009507
            "chloroplast" evidence=IDA] [GO:0009534 "chloroplast thylakoid"
            evidence=IDA] InterPro:IPR005097 Pfam:PF03435 InterPro:IPR016040
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
            Gene3D:3.40.50.720 GO:GO:0016491 eggNOG:COG1748 GO:GO:0009534
            EMBL:AY039543 EMBL:AY097361 IPI:IPI00520569 RefSeq:NP_564570.1
            UniGene:At.38025 UniGene:At.48296 ProteinModelPortal:Q94BZ0
            SMR:Q94BZ0 IntAct:Q94BZ0 STRING:Q94BZ0 PaxDb:Q94BZ0 PRIDE:Q94BZ0
            EnsemblPlants:AT1G50450.1 GeneID:841467 KEGG:ath:AT1G50450
            TAIR:At1g50450 HOGENOM:HOG000012826 InParanoid:Q94BZ0 OMA:IFPGISN
            PhylomeDB:Q94BZ0 ProtClustDB:CLSN2688642 Genevestigator:Q94BZ0
            Uniprot:Q94BZ0
        Length = 428

 Score = 1361 (484.2 bits), Expect = 4.4e-139, P = 4.4e-139
 Identities = 258/349 (73%), Positives = 301/349 (86%)

Query:     1 MVSTLGKNSEFAEVNIYNEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYID 60
             MV+ LG+NSEF++V+I +   L  +LRDVDLVVHAAGPFQQAP+CTVLEAAI+TKTAY+D
Sbjct:    80 MVAKLGENSEFSQVDINDAKMLETSLRDVDLVVHAAGPFQQAPRCTVLEAAIKTKTAYLD 139

Query:    61 VCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVSNVMAAELVRVARNESKGEPERLRF 120
             VCDDT Y+ RAKS +  AIAANIPA+TT GIYPGVSNVMAAE+V  AR+E KG+PE+LRF
Sbjct:   140 VCDDTSYAFRAKSLEAEAIAANIPALTTAGIYPGVSNVMAAEMVAAARSEDKGKPEKLRF 199

Query:   121 SXXXXXXXXXXPTILATSFLLLGEEVVAYNKGEEITLEPYSGMLSVDFGKGIGRKDVFLL 180
             S          PTILATSFLLLGEEV AY +GE++ L PYSGM++VDFGKGI ++DV+LL
Sbjct:   200 SYYTAGTGGAGPTILATSFLLLGEEVTAYKQGEKVKLRPYSGMITVDFGKGIRKRDVYLL 259

Query:   181 NLPEVRSAREVLGVPTVSARFGTAPFFWNWGMVTMQRLFPAEYLRDRSKVQQLVQLFDPV 240
             NLPEVRS  EVLGVPTV ARFGTAPFFWNWGM  M +L P+E LRDR+KVQQ+V+LFDPV
Sbjct:   260 NLPEVRSTHEVLGVPTVVARFGTAPFFWNWGMEIMTKLLPSEVLRDRTKVQQMVELFDPV 319

Query:   241 VRAFDGIAGERVSMRVDLECTDGRNTVGIFSHRRLSVSVGTAIAAFVLAVLEGATQPGVW 300
             VRA DG AGERVSMRVDLEC+DGR TVG+FSH++LSVSVG + AAFV A+LEG+TQPGVW
Sbjct:   320 VRAMDGFAGERVSMRVDLECSDGRTTVGLFSHKKLSVSVGVSTAAFVAAMLEGSTQPGVW 379

Query:   301 FPEEPEGIAIEAREVLLKRASQGTINFVMNKAPWMVETEPKELGLGIYI 349
             FPEEP+GIA+EAREVLLKRASQGT NF++NK PWMVETEPKE+ LGIY+
Sbjct:   380 FPEEPQGIAVEAREVLLKRASQGTFNFILNKPPWMVETEPKEVVLGIYV 428


>UNIPROTKB|Q4KB25 [details] [associations]
            symbol:PFL_3454 "Saccharopine dehydrogenase" species:220664
            "Pseudomonas protegens Pf-5" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR005097
            Pfam:PF03435 InterPro:IPR016040 GO:GO:0000166 Gene3D:3.40.50.720
            EMBL:CP000076 GenomeReviews:CP000076_GR GO:GO:0004754
            eggNOG:COG3268 RefSeq:YP_260558.1 ProteinModelPortal:Q4KB25
            STRING:Q4KB25 GeneID:3475489 KEGG:pfl:PFL_3454 PATRIC:19876243
            HOGENOM:HOG000253294 OMA:DVSTAYY
            BioCyc:PFLU220664:GIX8-3469-MONOMER Uniprot:Q4KB25
        Length = 359

 Score = 117 (46.2 bits), Expect = 0.00032, P = 0.00032
 Identities = 40/183 (21%), Positives = 78/183 (42%)

Query:    18 NEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDR 77
             ++  LL  ++ + LV+H AGPF  A    ++EA +     Y+D+  +    + A+S  +R
Sbjct:    65 DDARLLAQVKGLGLVLHCAGPFS-ATAAPMIEACLRASAHYLDITGEIAVFEHAQSLNER 123

Query:    78 AIAANIPAITTGGIYPGVS-NVMAAELVRVARNESKGEPERLRFSXXXXXXXXXXPTILA 136
             A AA +       I PGV  +V+  + V  A  ++   P+    +          P    
Sbjct:   124 ARAAGVV------ICPGVGFDVVPTDCVAAALKDAL--PDATHLALGFDSRSSFSPGTAK 175

Query:   137 TSFLLLGEEVVAYNKGEEITLEPYSGMLSVDFGKGIGRKDVFLLNLP--EVRSAREVLGV 194
             TS   + +       G  +++     +  +DFG G    +   + +P  ++ +A    G+
Sbjct:   176 TSIEGMAQGGKVRRDGRIVSVPLAYRVRRIDFGAG----EKLSMTIPWGDISTAYHTTGI 231

Query:   195 PTV 197
             P +
Sbjct:   232 PNI 234


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.395    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      349       339   0.00094  116 3  11 22  0.38    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  198 KB (2112 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.30u 0.15s 23.45t   Elapsed:  00:00:01
  Total cpu time:  23.30u 0.15s 23.45t   Elapsed:  00:00:01
  Start:  Fri May 10 07:17:14 2013   End:  Fri May 10 07:17:15 2013

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