BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018848
         (349 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P70117|LG3BP_MESAU Galectin-3-binding protein OS=Mesocricetus auratus GN=LGALS3BP PE=2
           SV=1
          Length = 578

 Score = 34.3 bits (77), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 231 QQLVQLFDPVVRAFDGIAGERVSMRVDLECTD-GRNTVGIFSHRRLSVSVGTAIAAFVLA 289
            +L+   +P  +A   + G  V MRVD EC    R+ +  F  RR+ V++ +      LA
Sbjct: 172 HKLILNTNPEAQALWQVVGSSVIMRVDAECMPVVRDFLRYFYSRRIEVTMSSVKCLHKLA 231

Query: 290 VLEGATQ 296
              GATQ
Sbjct: 232 SAYGATQ 238


>sp|P20151|KLK2_HUMAN Kallikrein-2 OS=Homo sapiens GN=KLK2 PE=2 SV=1
          Length = 261

 Score = 33.9 bits (76), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 67/164 (40%), Gaps = 38/164 (23%)

Query: 175 KDVFLLNLPE---VRSAREVLGVPTVSARFGTAPFFWNWGMVTMQRLFPAEYLRDRSKVQ 231
            D+ LL L E   +    +VLG+PT     GT  +   WG +      P E+LR RS   
Sbjct: 119 HDLMLLRLSEPAKITDVVKVLGLPTQEPALGTTCYASGWGSIE-----PEEFLRPRS--L 171

Query: 232 QLVQLF----DPVVRAFDGIAGERVS--MRVDLECTDGRNTVGIFSHRRLSVSVGTAIAA 285
           Q V L     D   RA+     E+V+  M      T G++T G           G +   
Sbjct: 172 QCVSLHLLSNDMCARAYS----EKVTEFMLCAGLWTGGKDTCG-----------GDSGGP 216

Query: 286 FVL-AVLEGATQPGVWFPEE---PEGIAIEAREVLLKRASQGTI 325
            V   VL+G T    W PE    PE  A+  + V  ++  + TI
Sbjct: 217 LVCNGVLQGITS---WGPEPCALPEKPAVYTKVVHYRKWIKDTI 257


>sp|O70513|LG3BP_RAT Galectin-3-binding protein OS=Rattus norvegicus GN=Lgals3bp PE=1
           SV=2
          Length = 574

 Score = 33.5 bits (75), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 238 DPVVRAFDGIAGERVSMRVDLECTD-GRNTVGIFSHRRLSVSVGTAIAAFVLAVLEGATQ 296
           +P  +A   + G  V MRVD EC    R+ +  F  RR+ VS+ +      LA   GAT+
Sbjct: 179 NPEAQALWQVVGSSVIMRVDAECMPVVRDFLRYFYSRRIEVSMSSVKCLHKLASAYGATE 238


>sp|Q07797|LG3BP_MOUSE Galectin-3-binding protein OS=Mus musculus GN=Lgals3bp PE=1 SV=1
          Length = 577

 Score = 33.5 bits (75), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 238 DPVVRAFDGIAGERVSMRVDLECTD-GRNTVGIFSHRRLSVSVGTAIAAFVLAVLEGATQ 296
           +P  +A   + G  V MRVD EC    R+ +  F  RR+ VS+ +      LA   GAT+
Sbjct: 179 NPEAQALWQVVGSSVIMRVDAECMPVVRDFLRYFYSRRIEVSMSSVKCLHKLASAYGATE 238


>sp|P52661|GBPR_AZOBR HTH-type transcriptional regulator GbpR OS=Azospirillum brasilense
           GN=gbpR PE=1 SV=1
          Length = 342

 Score = 33.1 bits (74), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 33/62 (53%)

Query: 276 SVSVGTAIAAFVLAVLEGATQPGVWFPEEPEGIAIEAREVLLKRASQGTINFVMNKAPWM 335
           SVS+GT +A  V  V+   T      P+    +A+E  +VL +R  QG ++F + + P  
Sbjct: 107 SVSIGTVMAPAVELVVPVITTLTRDHPDLKIAVAVETSDVLAERVRQGVMDFAIGRLPDH 166

Query: 336 VE 337
           V+
Sbjct: 167 VD 168


>sp|A8LQI0|PSUG_DINSH Pseudouridine-5'-phosphate glycosidase OS=Dinoroseobacter shibae
           (strain DFL 12) GN=psuG PE=3 SV=1
          Length = 305

 Score = 32.3 bits (72), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 24/155 (15%)

Query: 100 AAELVRVARNESKGEPERLRFSYYTAGTGGAGPTILATSFL--LLGEEVVA------YNK 151
           A EL  +A+ +   +  R    Y  +    AG T+ AT  +  + G  V A       +K
Sbjct: 75  ADELEALAKVKDALKISRADIGYAISQGKSAGTTVAATMIVAQMAGIRVFATGGIGGVHK 134

Query: 152 GEEITLEPYSGMLSVDFGKGIGRKDVF--------LLNLPEVRSAREVLGVPTVSARFGT 203
           G E + +     +S D  + +GR DV         +L++P+     E  GV  V  R  T
Sbjct: 135 GVETSFD-----ISADLTE-LGRTDVIVVAAGAKAILDVPKTLEVLETQGVSVVGYRTDT 188

Query: 204 APFFWNWG--MVTMQRLFPAEYLRDRSKVQQLVQL 236
            P FW  G  +    RL  A  + +  KV+  ++L
Sbjct: 189 LPAFWTSGSDLDIPLRLDSAAEISEFQKVRDALRL 223


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.136    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125,924,830
Number of Sequences: 539616
Number of extensions: 5230444
Number of successful extensions: 11499
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 11498
Number of HSP's gapped (non-prelim): 8
length of query: 349
length of database: 191,569,459
effective HSP length: 118
effective length of query: 231
effective length of database: 127,894,771
effective search space: 29543692101
effective search space used: 29543692101
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)