Query 018848
Match_columns 349
No_of_seqs 157 out of 1360
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 04:32:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018848.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018848hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1748 LYS9 Saccharopine dehy 100.0 4.7E-43 1E-47 334.2 25.9 305 6-340 46-381 (389)
2 PF03435 Saccharop_dh: Sacchar 100.0 1.5E-36 3.3E-41 295.9 22.5 304 5-323 44-382 (386)
3 PLN02819 lysine-ketoglutarate 99.9 6.2E-26 1.3E-30 239.5 26.5 284 8-302 628-1017(1042)
4 COG3268 Uncharacterized conser 99.9 3.2E-26 7E-31 209.7 18.7 312 3-328 48-378 (382)
5 KOG2733 Uncharacterized membra 99.9 1.1E-21 2.4E-26 181.3 12.8 96 10-106 65-161 (423)
6 KOG0172 Lysine-ketoglutarate r 99.2 2.1E-11 4.5E-16 114.8 5.2 176 7-195 46-236 (445)
7 TIGR01921 DAP-DH diaminopimela 97.6 0.00021 4.5E-09 67.7 8.7 75 22-99 54-129 (324)
8 PRK00048 dihydrodipicolinate r 97.5 0.00086 1.9E-08 61.9 10.4 83 19-106 51-134 (257)
9 PRK13304 L-aspartate dehydroge 97.0 0.0025 5.4E-08 59.1 8.1 86 21-121 54-143 (265)
10 TIGR03855 NAD_NadX aspartate d 96.4 0.014 3E-07 52.9 8.0 85 22-121 30-119 (229)
11 TIGR00036 dapB dihydrodipicoli 96.1 0.012 2.7E-07 54.6 6.3 70 24-98 64-134 (266)
12 TIGR00715 precor6x_red precorr 95.8 0.014 3E-07 53.8 5.2 55 9-63 44-100 (256)
13 PRK13302 putative L-aspartate 95.8 0.03 6.6E-07 52.1 7.2 86 21-120 60-145 (271)
14 PRK13303 L-aspartate dehydroge 95.5 0.04 8.8E-07 51.1 6.9 81 27-120 60-142 (265)
15 PF05368 NmrA: NmrA-like famil 95.2 0.024 5.2E-07 51.0 4.2 54 8-62 44-101 (233)
16 PF01073 3Beta_HSD: 3-beta hyd 95.0 0.05 1.1E-06 50.8 6.0 31 10-40 48-78 (280)
17 CHL00194 ycf39 Ycf39; Provisio 94.8 0.24 5.2E-06 46.8 10.2 55 8-62 44-109 (317)
18 PF13460 NAD_binding_10: NADH( 94.6 0.068 1.5E-06 45.9 5.5 34 7-40 39-72 (183)
19 PF03447 NAD_binding_3: Homose 94.1 0.09 1.9E-06 42.1 4.7 61 22-86 51-115 (117)
20 cd01065 NAD_bind_Shikimate_DH 94.1 0.055 1.2E-06 45.3 3.6 72 24-106 77-149 (155)
21 COG1091 RfbD dTDP-4-dehydrorha 93.8 0.078 1.7E-06 49.4 4.3 52 13-65 33-102 (281)
22 PRK13301 putative L-aspartate 93.8 0.21 4.6E-06 46.0 7.1 76 21-102 54-134 (267)
23 COG0673 MviM Predicted dehydro 93.6 0.51 1.1E-05 44.9 9.8 91 21-122 58-155 (342)
24 COG5310 Homospermidine synthas 93.5 0.38 8.2E-06 45.4 8.1 80 21-104 76-176 (481)
25 PF01408 GFO_IDH_MocA: Oxidore 93.5 0.16 3.5E-06 40.5 5.2 64 22-88 54-119 (120)
26 PRK11579 putative oxidoreducta 93.4 0.54 1.2E-05 45.2 9.6 90 21-121 55-151 (346)
27 COG1712 Predicted dinucleotide 93.4 0.29 6.4E-06 43.9 7.0 85 21-120 53-141 (255)
28 PRK06349 homoserine dehydrogen 93.3 0.48 1E-05 47.0 9.3 91 22-120 64-156 (426)
29 PLN02214 cinnamoyl-CoA reducta 93.2 0.17 3.7E-06 48.5 5.7 33 8-40 61-93 (342)
30 PRK10206 putative oxidoreducta 92.9 0.65 1.4E-05 44.7 9.4 90 21-121 55-151 (344)
31 PLN02657 3,8-divinyl protochlo 92.3 0.33 7.3E-06 47.5 6.5 33 7-39 111-147 (390)
32 COG2099 CobK Precorrin-6x redu 91.7 0.24 5.1E-06 45.2 4.3 83 10-92 46-138 (257)
33 COG3804 Uncharacterized conser 91.3 1.1 2.4E-05 41.6 8.1 100 10-120 52-157 (350)
34 PRK06270 homoserine dehydrogen 91.2 1.4 3.1E-05 42.3 9.5 92 21-120 80-177 (341)
35 PLN03209 translocon at the inn 91.2 0.44 9.5E-06 48.9 6.1 32 8-39 139-170 (576)
36 cd01483 E1_enzyme_family Super 90.9 0.51 1.1E-05 39.1 5.3 58 5-64 65-123 (143)
37 TIGR01181 dTDP_gluc_dehyt dTDP 90.7 0.46 1E-05 44.2 5.4 33 8-40 51-85 (317)
38 KOG1502 Flavonol reductase/cin 90.2 0.47 1E-05 45.1 5.0 49 7-55 57-119 (327)
39 PF01113 DapB_N: Dihydrodipico 89.9 0.34 7.4E-06 39.4 3.4 62 20-88 59-121 (124)
40 PRK08374 homoserine dehydrogen 89.9 0.86 1.9E-05 43.8 6.6 89 22-120 83-174 (336)
41 PLN02427 UDP-apiose/xylose syn 89.7 0.6 1.3E-05 45.4 5.5 31 7-37 65-95 (386)
42 PRK12548 shikimate 5-dehydroge 89.7 0.44 9.6E-06 44.7 4.4 88 9-107 180-270 (289)
43 PF02571 CbiJ: Precorrin-6x re 89.4 0.46 9.9E-06 43.7 4.1 54 10-63 46-101 (249)
44 PRK08057 cobalt-precorrin-6x r 89.2 0.41 8.8E-06 44.0 3.6 55 9-63 44-100 (248)
45 KOG2865 NADH:ubiquinone oxidor 88.9 0.59 1.3E-05 43.5 4.4 34 8-41 110-143 (391)
46 PRK15181 Vi polysaccharide bio 87.5 1.4 3E-05 42.2 6.4 31 8-38 70-100 (348)
47 PRK08223 hypothetical protein; 87.5 0.75 1.6E-05 43.1 4.3 58 4-62 92-151 (287)
48 PF00899 ThiF: ThiF family; I 87.2 0.59 1.3E-05 38.4 3.1 50 11-63 76-125 (135)
49 PRK06392 homoserine dehydrogen 87.0 8.1 0.00017 37.0 11.1 84 28-120 81-168 (326)
50 COG0460 ThrA Homoserine dehydr 86.9 4.1 8.9E-05 38.9 8.9 68 27-96 77-146 (333)
51 cd00757 ThiF_MoeB_HesA_family 86.4 1.1 2.4E-05 40.4 4.7 44 18-63 101-144 (228)
52 TIGR02355 moeB molybdopterin s 86.1 1.3 2.8E-05 40.4 5.0 56 5-62 90-146 (240)
53 COG0289 DapB Dihydrodipicolina 85.6 30 0.00065 32.0 13.6 154 22-189 63-230 (266)
54 PF07994 NAD_binding_5: Myo-in 85.6 1.5 3.2E-05 41.4 5.1 71 20-92 136-235 (295)
55 TIGR03466 HpnA hopanoid-associ 85.2 2.4 5.2E-05 39.6 6.6 32 8-39 44-75 (328)
56 TIGR02356 adenyl_thiF thiazole 85.2 1.5 3.4E-05 38.7 4.9 44 18-63 101-144 (202)
57 PLN02986 cinnamyl-alcohol dehy 85.1 0.79 1.7E-05 43.2 3.2 33 7-39 56-88 (322)
58 TIGR01472 gmd GDP-mannose 4,6- 85.0 1.8 4E-05 41.1 5.7 32 7-38 55-88 (343)
59 PRK11908 NAD-dependent epimera 84.8 1.8 3.9E-05 41.3 5.6 30 8-37 47-77 (347)
60 TIGR03450 mycothiol_INO1 inosi 84.5 1.9 4.2E-05 41.1 5.4 67 19-88 112-181 (351)
61 PRK06813 homoserine dehydrogen 84.4 5.2 0.00011 38.6 8.4 84 28-120 86-174 (346)
62 TIGR03649 ergot_EASG ergot alk 84.3 1.6 3.5E-05 40.2 4.9 49 8-57 40-98 (285)
63 KOG1199 Short-chain alcohol de 84.2 0.72 1.6E-05 39.8 2.2 36 2-37 50-92 (260)
64 PRK07877 hypothetical protein; 84.1 1.9 4.1E-05 45.6 5.7 58 4-63 171-229 (722)
65 PRK05865 hypothetical protein; 84.0 5.5 0.00012 43.1 9.2 57 7-63 40-103 (854)
66 cd01078 NAD_bind_H4MPT_DH NADP 83.9 1.4 3E-05 38.5 4.0 57 9-67 78-134 (194)
67 PRK00436 argC N-acetyl-gamma-g 83.7 0.97 2.1E-05 43.5 3.1 40 25-67 65-104 (343)
68 PRK04207 glyceraldehyde-3-phos 83.6 1.4 3E-05 42.5 4.1 40 22-64 72-111 (341)
69 PLN02662 cinnamyl-alcohol dehy 83.5 1 2.2E-05 42.3 3.2 34 7-40 55-88 (322)
70 PLN02989 cinnamyl-alcohol dehy 83.4 1.2 2.5E-05 42.1 3.5 33 7-39 56-88 (325)
71 COG4221 Short-chain alcohol de 83.2 1 2.2E-05 41.0 2.9 38 1-38 46-91 (246)
72 cd01485 E1-1_like Ubiquitin ac 82.9 2.1 4.5E-05 37.8 4.7 58 4-63 86-146 (198)
73 PLN02240 UDP-glucose 4-epimera 82.7 3 6.6E-05 39.6 6.2 32 7-38 58-91 (352)
74 PF00809 Pterin_bind: Pterin b 82.6 16 0.00034 32.5 10.3 52 10-64 73-125 (210)
75 PF01118 Semialdhyde_dh: Semia 82.5 1 2.2E-05 36.2 2.4 37 27-66 65-101 (121)
76 TIGR03589 PseB UDP-N-acetylglu 82.4 1.4 3.1E-05 41.8 3.7 31 8-38 54-84 (324)
77 PRK09987 dTDP-4-dehydrorhamnos 82.3 1.8 3.9E-05 40.5 4.4 28 12-39 36-65 (299)
78 PRK05690 molybdopterin biosynt 82.3 2.3 5E-05 38.9 4.9 56 5-62 98-154 (245)
79 PRK09291 short chain dehydroge 82.1 2 4.4E-05 38.7 4.5 34 6-39 50-84 (257)
80 PLN00198 anthocyanidin reducta 82.0 1.4 3.1E-05 41.8 3.6 32 8-39 60-91 (338)
81 cd05311 NAD_bind_2_malic_enz N 81.5 2.6 5.6E-05 38.1 4.9 65 21-93 90-155 (226)
82 PLN02695 GDP-D-mannose-3',5'-e 81.3 2.2 4.8E-05 41.4 4.7 31 9-39 66-96 (370)
83 PRK08328 hypothetical protein; 81.1 3.2 6.8E-05 37.6 5.3 57 5-63 94-151 (231)
84 PRK05597 molybdopterin biosynt 80.5 2.6 5.7E-05 40.7 4.9 55 5-62 94-150 (355)
85 PF04321 RmlD_sub_bind: RmlD s 80.0 1.3 2.9E-05 41.3 2.6 51 13-64 34-102 (286)
86 PRK06179 short chain dehydroge 80.0 1.7 3.7E-05 39.7 3.2 32 8-39 46-84 (270)
87 PRK14851 hypothetical protein; 80.0 3.1 6.7E-05 43.8 5.5 57 4-62 108-167 (679)
88 COG0074 SucD Succinyl-CoA synt 79.9 20 0.00043 33.5 10.0 64 20-86 55-120 (293)
89 TIGR01179 galE UDP-glucose-4-e 79.8 4 8.6E-05 38.0 5.8 32 8-39 48-81 (328)
90 TIGR01761 thiaz-red thiazoliny 79.7 7.3 0.00016 37.5 7.6 69 21-95 55-127 (343)
91 PRK06153 hypothetical protein; 79.7 2.7 5.8E-05 41.1 4.5 53 7-63 247-299 (393)
92 PRK07889 enoyl-(acyl carrier p 79.4 1.7 3.7E-05 39.6 3.0 34 5-38 55-95 (256)
93 PLN02253 xanthoxin dehydrogena 79.2 2.3 5.1E-05 39.0 3.9 32 7-38 66-104 (280)
94 PRK06182 short chain dehydroge 79.0 2.6 5.5E-05 38.6 4.1 32 8-39 47-85 (273)
95 COG2910 Putative NADH-flavin r 79.0 3.3 7.3E-05 36.2 4.4 34 7-40 41-74 (211)
96 PRK08309 short chain dehydroge 79.0 4.8 0.0001 34.8 5.6 56 7-65 47-114 (177)
97 PRK08265 short chain dehydroge 78.4 1.8 4E-05 39.4 2.9 34 5-38 50-90 (261)
98 PRK05866 short chain dehydroge 78.2 2.3 5E-05 39.7 3.6 34 6-39 88-128 (293)
99 PRK06180 short chain dehydroge 78.1 2.3 5.1E-05 39.1 3.5 34 6-39 49-89 (277)
100 PRK05867 short chain dehydroge 77.9 2.5 5.4E-05 38.1 3.7 34 6-39 57-97 (253)
101 PRK08762 molybdopterin biosynt 77.5 3.7 8E-05 40.0 4.9 43 18-62 215-257 (376)
102 PRK07326 short chain dehydroge 77.4 2.9 6.2E-05 37.2 3.8 34 7-40 54-94 (237)
103 PRK10538 malonic semialdehyde 77.4 2.1 4.5E-05 38.6 2.9 34 5-38 44-84 (248)
104 TIGR01214 rmlD dTDP-4-dehydror 77.0 3.6 7.8E-05 37.8 4.5 27 13-39 33-61 (287)
105 PRK12481 2-deoxy-D-gluconate 3 77.0 2.7 5.8E-05 38.1 3.6 35 5-39 53-94 (251)
106 cd01487 E1_ThiF_like E1_ThiF_l 76.9 4.4 9.5E-05 35.0 4.7 42 19-62 79-121 (174)
107 PRK10217 dTDP-glucose 4,6-dehy 76.7 2.6 5.6E-05 40.2 3.5 32 8-39 52-85 (355)
108 PRK06139 short chain dehydroge 76.7 3.1 6.7E-05 39.8 4.0 32 6-37 55-93 (330)
109 PRK08993 2-deoxy-D-gluconate 3 76.7 2.4 5.3E-05 38.3 3.2 33 6-38 56-95 (253)
110 PRK07666 fabG 3-ketoacyl-(acyl 76.7 2.6 5.6E-05 37.6 3.4 34 6-39 55-95 (239)
111 PLN00141 Tic62-NAD(P)-related 76.7 7.6 0.00016 35.1 6.5 32 7-38 62-95 (251)
112 PLN02583 cinnamoyl-CoA reducta 76.6 5.9 0.00013 36.9 5.9 34 7-40 57-90 (297)
113 PRK06200 2,3-dihydroxy-2,3-dih 76.5 2.5 5.4E-05 38.4 3.2 35 5-39 50-91 (263)
114 PRK07688 thiamine/molybdopteri 76.3 4.4 9.6E-05 39.0 5.0 55 5-62 92-148 (339)
115 PRK14852 hypothetical protein; 76.2 4.3 9.4E-05 44.2 5.3 59 4-63 397-457 (989)
116 PRK15116 sulfur acceptor prote 76.2 5.3 0.00011 37.1 5.3 19 19-37 111-130 (268)
117 PRK08125 bifunctional UDP-gluc 76.2 3.8 8.2E-05 43.1 4.9 30 8-37 361-391 (660)
118 PRK05600 thiamine biosynthesis 76.1 3.9 8.5E-05 39.8 4.6 55 5-62 107-163 (370)
119 PRK08267 short chain dehydroge 76.1 2.3 5.1E-05 38.5 2.9 32 7-38 48-87 (260)
120 COG0300 DltE Short-chain dehyd 76.0 2 4.4E-05 39.7 2.5 32 6-37 55-93 (265)
121 PRK07878 molybdopterin biosynt 75.9 4.3 9.4E-05 39.8 4.9 55 5-62 108-164 (392)
122 PRK12475 thiamine/molybdopteri 75.5 3.7 7.9E-05 39.5 4.2 51 9-62 98-148 (338)
123 PRK08643 acetoin reductase; Va 75.2 3.3 7.2E-05 37.3 3.7 34 6-39 50-90 (256)
124 PRK12937 short chain dehydroge 75.1 2.9 6.3E-05 37.3 3.3 33 6-38 54-93 (245)
125 PRK08415 enoyl-(acyl carrier p 75.1 2.9 6.2E-05 38.7 3.3 33 5-38 54-93 (274)
126 PRK06138 short chain dehydroge 75.1 3.2 6.9E-05 37.2 3.5 33 6-38 52-91 (252)
127 PRK06482 short chain dehydroge 74.9 2.2 4.8E-05 39.0 2.5 34 6-39 47-87 (276)
128 PRK09186 flagellin modificatio 74.9 3 6.5E-05 37.5 3.3 32 8-39 56-94 (256)
129 PRK07454 short chain dehydroge 74.9 3 6.6E-05 37.2 3.3 34 6-39 54-94 (241)
130 PRK12320 hypothetical protein; 74.8 6.1 0.00013 41.8 5.9 55 7-62 40-101 (699)
131 PRK07411 hypothetical protein; 74.8 4.8 0.0001 39.5 4.9 55 5-62 104-160 (390)
132 PRK09009 C factor cell-cell si 74.7 3.8 8.3E-05 36.4 3.9 34 7-40 43-79 (235)
133 PLN02896 cinnamyl-alcohol dehy 74.7 3.3 7.2E-05 39.6 3.7 33 7-39 58-90 (353)
134 PRK06935 2-deoxy-D-gluconate 3 74.6 3.6 7.7E-05 37.2 3.7 34 6-39 62-102 (258)
135 PRK09134 short chain dehydroge 74.5 3.1 6.6E-05 37.7 3.3 34 6-39 58-98 (258)
136 PLN02650 dihydroflavonol-4-red 74.4 3.3 7.2E-05 39.5 3.6 32 8-39 57-88 (351)
137 PRK08644 thiamine biosynthesis 74.4 5.6 0.00012 35.5 4.8 43 19-63 108-151 (212)
138 PF00389 2-Hacid_dh: D-isomer 74.3 12 0.00027 30.2 6.6 76 9-93 19-94 (133)
139 TIGR00284 dihydropteroate synt 74.0 31 0.00067 35.1 10.4 79 11-93 210-291 (499)
140 PRK08219 short chain dehydroge 74.0 4.1 8.9E-05 35.8 3.9 32 8-39 48-82 (227)
141 PRK08594 enoyl-(acyl carrier p 74.0 2.7 5.9E-05 38.3 2.8 31 7-37 59-96 (257)
142 PRK13394 3-hydroxybutyrate deh 73.9 2.8 6.1E-05 37.8 2.9 34 6-39 55-95 (262)
143 TIGR03215 ac_ald_DH_ac acetald 73.9 3.4 7.5E-05 38.7 3.5 34 28-64 64-97 (285)
144 PRK12367 short chain dehydroge 73.8 4.1 9E-05 37.0 3.9 29 10-38 61-89 (245)
145 PRK07856 short chain dehydroge 73.8 2.7 5.8E-05 37.9 2.7 32 7-38 47-85 (252)
146 TIGR02853 spore_dpaA dipicolin 73.7 8.4 0.00018 36.1 6.0 18 20-37 201-218 (287)
147 PRK12549 shikimate 5-dehydroge 73.6 2.3 4.9E-05 39.9 2.2 74 22-107 186-261 (284)
148 PRK08220 2,3-dihydroxybenzoate 73.6 3.6 7.7E-05 36.9 3.4 34 6-39 47-87 (252)
149 PRK07109 short chain dehydroge 73.5 3.6 7.9E-05 39.2 3.6 33 6-38 56-95 (334)
150 PRK07478 short chain dehydroge 73.4 3.7 8.1E-05 37.0 3.5 33 6-38 54-93 (254)
151 PRK08628 short chain dehydroge 73.2 3.7 8.1E-05 37.0 3.5 33 6-38 54-93 (258)
152 PRK06123 short chain dehydroge 73.2 4.3 9.3E-05 36.3 3.9 34 6-39 51-91 (248)
153 PRK10084 dTDP-glucose 4,6 dehy 73.2 4.1 8.8E-05 38.8 3.9 32 8-39 51-84 (352)
154 PRK08306 dipicolinate synthase 73.0 6.9 0.00015 36.8 5.3 42 20-64 202-243 (296)
155 PRK06181 short chain dehydroge 72.9 4.3 9.3E-05 36.7 3.9 35 6-40 49-90 (263)
156 PRK05884 short chain dehydroge 72.8 4.1 8.9E-05 36.2 3.6 31 9-39 46-80 (223)
157 PRK07453 protochlorophyllide o 72.8 3.3 7.2E-05 39.0 3.1 33 7-39 55-94 (322)
158 PLN00016 RNA-binding protein; 72.8 3 6.5E-05 40.4 2.9 54 8-63 111-165 (378)
159 PRK12939 short chain dehydroge 72.8 4.3 9.4E-05 36.2 3.8 33 6-38 55-94 (250)
160 PLN02358 glyceraldehyde-3-phos 72.6 4.8 0.0001 38.7 4.2 52 10-64 77-128 (338)
161 PRK10675 UDP-galactose-4-epime 72.5 10 0.00023 35.6 6.5 31 7-37 50-82 (338)
162 PRK06114 short chain dehydroge 72.4 2.8 6.1E-05 37.9 2.5 34 6-39 57-97 (254)
163 COG0002 ArgC Acetylglutamate s 72.1 10 0.00022 36.4 6.1 85 14-105 58-166 (349)
164 PRK08642 fabG 3-ketoacyl-(acyl 72.1 2.6 5.6E-05 37.8 2.2 34 5-38 50-91 (253)
165 PRK08416 7-alpha-hydroxysteroi 72.0 4.3 9.3E-05 36.9 3.6 33 6-38 58-97 (260)
166 PRK07067 sorbitol dehydrogenas 72.0 3.2 7E-05 37.5 2.8 35 5-39 50-91 (257)
167 cd01492 Aos1_SUMO Ubiquitin ac 71.9 6.1 0.00013 34.8 4.4 40 22-63 104-143 (197)
168 TIGR03325 BphB_TodD cis-2,3-di 71.8 4 8.6E-05 37.1 3.3 34 6-39 50-90 (262)
169 PRK07063 short chain dehydroge 71.7 4.1 8.9E-05 36.8 3.4 34 6-39 57-97 (260)
170 PRK06172 short chain dehydroge 71.6 3.1 6.7E-05 37.4 2.5 33 6-38 55-94 (253)
171 PF00106 adh_short: short chai 71.4 3.2 7E-05 34.5 2.5 35 6-40 51-92 (167)
172 PRK12749 quinate/shikimate deh 71.3 4.2 9.2E-05 38.1 3.4 77 20-107 188-267 (288)
173 PRK12746 short chain dehydroge 71.3 4.4 9.6E-05 36.4 3.5 33 7-39 56-101 (254)
174 PRK08339 short chain dehydroge 71.3 4.8 0.0001 36.7 3.8 33 6-38 57-95 (263)
175 cd01486 Apg7 Apg7 is an E1-lik 71.3 7.1 0.00015 36.9 4.9 42 18-61 98-139 (307)
176 PRK08063 enoyl-(acyl carrier p 71.1 4.3 9.3E-05 36.3 3.4 33 6-38 53-92 (250)
177 COG4091 Predicted homoserine d 70.8 5.7 0.00012 38.1 4.1 82 17-102 90-172 (438)
178 PRK00124 hypothetical protein; 70.6 21 0.00046 30.1 7.1 49 9-65 45-96 (151)
179 PRK05717 oxidoreductase; Valid 70.6 2.7 5.9E-05 38.0 2.0 34 5-38 54-94 (255)
180 PLN02725 GDP-4-keto-6-deoxyman 70.6 6.1 0.00013 36.5 4.4 28 12-39 31-60 (306)
181 PRK06194 hypothetical protein; 70.6 4.4 9.6E-05 37.2 3.4 33 6-38 54-93 (287)
182 PRK08263 short chain dehydroge 70.5 2.8 6.2E-05 38.4 2.1 34 6-39 48-88 (275)
183 PRK06463 fabG 3-ketoacyl-(acyl 70.5 5.4 0.00012 36.0 3.9 31 8-38 52-89 (255)
184 PRK07535 methyltetrahydrofolat 70.4 35 0.00077 31.5 9.3 42 45-89 79-123 (261)
185 cd07039 TPP_PYR_POX Pyrimidine 70.4 40 0.00086 28.6 9.0 77 21-104 5-84 (164)
186 PRK05565 fabG 3-ketoacyl-(acyl 70.3 4.8 0.0001 35.8 3.5 33 7-39 55-94 (247)
187 PRK06398 aldose dehydrogenase; 70.2 4.8 0.0001 36.5 3.5 31 8-38 45-82 (258)
188 PLN02260 probable rhamnose bio 70.2 8.9 0.00019 40.3 6.0 57 7-63 57-132 (668)
189 cd07037 TPP_PYR_MenD Pyrimidin 70.2 33 0.00071 29.2 8.4 70 28-104 11-81 (162)
190 PRK06500 short chain dehydroge 70.1 4.1 8.9E-05 36.4 3.0 34 5-38 50-90 (249)
191 PRK06940 short chain dehydroge 70.0 5.5 0.00012 36.7 3.9 33 6-38 48-86 (275)
192 PRK12936 3-ketoacyl-(acyl-carr 70.0 4.3 9.3E-05 36.1 3.1 33 6-38 51-90 (245)
193 PRK05678 succinyl-CoA syntheta 69.9 9.5 0.00021 35.9 5.5 63 20-86 55-120 (291)
194 PRK07814 short chain dehydroge 69.9 5.3 0.00011 36.3 3.7 33 6-38 58-97 (263)
195 PRK12935 acetoacetyl-CoA reduc 69.7 4.6 0.0001 36.1 3.2 34 7-40 56-96 (247)
196 PRK12745 3-ketoacyl-(acyl-carr 69.6 5.4 0.00012 35.8 3.7 32 7-38 52-90 (256)
197 PF13380 CoA_binding_2: CoA bi 69.6 6.2 0.00013 31.6 3.6 56 27-89 54-110 (116)
198 TIGR01832 kduD 2-deoxy-D-gluco 69.5 4.9 0.00011 35.9 3.4 34 5-38 50-90 (248)
199 PRK08278 short chain dehydroge 69.5 5.4 0.00012 36.6 3.7 33 6-38 61-100 (273)
200 PRK06947 glucose-1-dehydrogena 69.5 5.7 0.00012 35.5 3.8 34 6-39 51-91 (248)
201 PRK05876 short chain dehydroge 69.4 3.3 7.2E-05 38.2 2.3 33 6-38 54-93 (275)
202 TIGR00507 aroE shikimate 5-deh 69.3 3.3 7.1E-05 38.3 2.2 70 27-107 177-248 (270)
203 TIGR02130 dapB_plant dihydrodi 69.0 27 0.00059 32.5 8.2 69 20-96 59-130 (275)
204 PRK08300 acetaldehyde dehydrog 69.0 6.2 0.00013 37.3 4.0 71 27-105 69-142 (302)
205 PRK06197 short chain dehydroge 69.0 5.1 0.00011 37.4 3.5 32 7-38 67-105 (306)
206 PRK06125 short chain dehydroge 69.0 5 0.00011 36.3 3.3 33 6-38 56-91 (259)
207 PRK12744 short chain dehydroge 68.9 4.9 0.00011 36.3 3.3 33 6-38 60-99 (257)
208 PRK09466 metL bifunctional asp 68.8 48 0.001 35.9 11.1 84 30-120 543-628 (810)
209 COG3967 DltE Short-chain dehyd 68.8 4.2 9.1E-05 36.3 2.6 31 7-37 50-87 (245)
210 PLN02653 GDP-mannose 4,6-dehyd 68.5 5.1 0.00011 38.0 3.4 32 7-38 60-93 (340)
211 cd01484 E1-2_like Ubiquitin ac 68.5 5.6 0.00012 36.2 3.5 52 9-62 71-123 (234)
212 PRK08340 glucose-1-dehydrogena 68.5 5.9 0.00013 35.8 3.7 31 8-38 49-86 (259)
213 TIGR01850 argC N-acetyl-gamma- 68.3 5 0.00011 38.7 3.3 41 23-66 63-103 (346)
214 PRK07890 short chain dehydroge 68.1 4.5 9.7E-05 36.4 2.8 34 6-39 53-93 (258)
215 TIGR03206 benzo_BadH 2-hydroxy 68.0 5.7 0.00012 35.5 3.5 33 6-38 51-90 (250)
216 PRK08277 D-mannonate oxidoredu 67.9 5.2 0.00011 36.6 3.2 34 6-39 58-98 (278)
217 PRK08264 short chain dehydroge 67.9 6.8 0.00015 34.7 4.0 33 6-38 48-83 (238)
218 PRK06079 enoyl-(acyl carrier p 67.9 5.8 0.00013 35.9 3.6 32 7-38 55-93 (252)
219 PRK08589 short chain dehydroge 67.8 6.1 0.00013 36.2 3.7 33 6-38 53-92 (272)
220 PRK07806 short chain dehydroge 67.7 6.1 0.00013 35.3 3.6 34 6-39 55-95 (248)
221 TIGR00978 asd_EA aspartate-sem 67.6 38 0.00083 32.5 9.2 89 26-123 71-172 (341)
222 PRK06598 aspartate-semialdehyd 67.5 53 0.0012 32.0 10.1 110 11-135 52-172 (369)
223 cd01422 MGS Methylglyoxal synt 67.5 10 0.00022 30.4 4.4 42 20-61 60-107 (115)
224 PRK05650 short chain dehydroge 67.4 6.7 0.00015 35.7 3.9 34 6-39 48-88 (270)
225 PRK08618 ornithine cyclodeamin 67.3 4.2 9.2E-05 38.8 2.6 40 22-66 186-225 (325)
226 PRK06128 oxidoreductase; Provi 67.2 5.3 0.00012 37.2 3.2 33 6-38 105-144 (300)
227 PRK11613 folP dihydropteroate 67.0 20 0.00043 33.6 6.9 31 28-63 88-119 (282)
228 TIGR02415 23BDH acetoin reduct 66.9 4.1 8.9E-05 36.5 2.3 33 6-38 48-87 (254)
229 PRK07576 short chain dehydroge 66.7 4.2 9E-05 37.1 2.3 32 7-38 58-96 (264)
230 PRK07024 short chain dehydroge 66.7 5 0.00011 36.3 2.8 32 8-39 51-89 (257)
231 PRK12825 fabG 3-ketoacyl-(acyl 66.6 4.3 9.4E-05 35.9 2.4 32 6-37 55-93 (249)
232 TIGR01532 E4PD_g-proteo D-eryt 66.6 7.2 0.00016 37.3 3.9 44 18-64 79-122 (325)
233 cd00532 MGS-like MGS-like doma 66.4 14 0.00029 29.3 5.0 44 18-61 56-105 (112)
234 PRK00258 aroE shikimate 5-dehy 66.4 3.7 8E-05 38.2 1.9 74 23-107 180-255 (278)
235 PRK07792 fabG 3-ketoacyl-(acyl 66.4 5.5 0.00012 37.4 3.1 33 6-38 61-99 (306)
236 PF02639 DUF188: Uncharacteriz 66.4 40 0.00087 27.6 7.8 51 7-65 27-80 (130)
237 PRK05854 short chain dehydroge 66.3 5.8 0.00012 37.4 3.3 33 7-39 65-104 (313)
238 PRK14027 quinate/shikimate deh 66.3 5.2 0.00011 37.4 2.9 75 22-107 188-263 (283)
239 PRK09135 pteridine reductase; 66.2 7.7 0.00017 34.5 4.0 32 8-39 58-96 (249)
240 PRK07424 bifunctional sterol d 66.2 7.5 0.00016 38.4 4.1 30 9-38 226-255 (406)
241 PRK12938 acetyacetyl-CoA reduc 66.2 6.6 0.00014 35.0 3.5 33 6-38 52-91 (246)
242 PRK05447 1-deoxy-D-xylulose 5- 66.2 27 0.00059 34.2 7.8 66 19-88 80-147 (385)
243 PRK12429 3-hydroxybutyrate deh 66.1 6.9 0.00015 35.0 3.7 34 6-39 52-92 (258)
244 PLN02968 Probable N-acetyl-gam 66.1 15 0.00032 36.0 6.1 36 26-65 102-137 (381)
245 PRK07370 enoyl-(acyl carrier p 66.1 6.6 0.00014 35.7 3.5 31 8-38 60-97 (258)
246 cd01489 Uba2_SUMO Ubiquitin ac 66.1 6.9 0.00015 37.2 3.7 57 4-62 64-122 (312)
247 PRK12823 benD 1,6-dihydroxycyc 66.0 6.6 0.00014 35.4 3.5 32 6-37 55-93 (260)
248 PRK06198 short chain dehydroge 65.9 6.5 0.00014 35.4 3.5 33 6-38 55-94 (260)
249 PRK09730 putative NAD(P)-bindi 65.8 4.5 9.7E-05 36.0 2.3 34 6-39 50-90 (247)
250 PRK12428 3-alpha-hydroxysteroi 65.7 4.3 9.4E-05 36.5 2.2 31 9-39 25-59 (241)
251 PRK07774 short chain dehydroge 65.7 7.1 0.00015 34.9 3.6 31 8-38 56-93 (250)
252 PRK12826 3-ketoacyl-(acyl-carr 65.7 6.9 0.00015 34.8 3.5 34 7-40 55-95 (251)
253 PRK07677 short chain dehydroge 65.6 4.9 0.00011 36.2 2.5 34 6-39 49-89 (252)
254 PRK07231 fabG 3-ketoacyl-(acyl 65.6 4.6 9.9E-05 36.1 2.3 32 7-38 53-91 (251)
255 TIGR01019 sucCoAalpha succinyl 65.5 14 0.0003 34.7 5.6 65 21-89 54-122 (286)
256 PRK12827 short chain dehydroge 65.5 8.6 0.00019 34.1 4.1 35 6-40 58-99 (249)
257 PF03446 NAD_binding_2: NAD bi 65.4 13 0.00027 31.5 4.9 70 21-95 50-124 (163)
258 COG0476 ThiF Dinucleotide-util 65.1 11 0.00025 34.3 4.9 58 4-63 95-153 (254)
259 PRK06949 short chain dehydroge 64.9 7.6 0.00016 34.9 3.7 34 6-39 57-97 (258)
260 PRK12743 oxidoreductase; Provi 64.8 7.4 0.00016 35.1 3.6 34 6-39 51-91 (256)
261 PRK07097 gluconate 5-dehydroge 64.8 6.1 0.00013 35.9 3.1 33 6-38 58-97 (265)
262 PRK07791 short chain dehydroge 64.8 6.8 0.00015 36.3 3.4 34 6-39 63-103 (286)
263 KOG1430 C-3 sterol dehydrogena 64.7 14 0.00029 35.9 5.4 53 6-59 54-121 (361)
264 PRK05855 short chain dehydroge 64.7 5.1 0.00011 40.7 2.8 34 6-39 363-403 (582)
265 PRK07062 short chain dehydroge 64.6 5.2 0.00011 36.3 2.6 31 8-38 60-97 (265)
266 PRK08251 short chain dehydroge 64.6 7.3 0.00016 34.8 3.5 32 7-38 53-91 (248)
267 PRK06196 oxidoreductase; Provi 64.4 7.9 0.00017 36.4 3.8 32 8-39 72-110 (315)
268 PRK05875 short chain dehydroge 64.3 7.5 0.00016 35.5 3.6 32 7-38 58-96 (276)
269 PRK12829 short chain dehydroge 64.0 8.2 0.00018 34.7 3.8 32 8-39 59-97 (264)
270 TIGR01830 3oxo_ACP_reduc 3-oxo 63.9 5.7 0.00012 35.1 2.6 34 6-39 47-87 (239)
271 PLN02383 aspartate semialdehyd 63.9 41 0.00088 32.4 8.6 101 26-137 67-178 (344)
272 smart00859 Semialdhyde_dh Semi 63.9 5.5 0.00012 31.8 2.3 36 27-65 64-102 (122)
273 PRK08159 enoyl-(acyl carrier p 63.8 6.6 0.00014 36.1 3.1 30 9-38 62-98 (272)
274 PRK06484 short chain dehydroge 63.4 5.2 0.00011 40.4 2.5 35 4-38 48-89 (520)
275 PRK06997 enoyl-(acyl carrier p 63.3 6.5 0.00014 35.8 2.9 29 10-38 59-94 (260)
276 PLN03096 glyceraldehyde-3-phos 63.0 9.2 0.0002 37.5 4.0 49 12-63 134-182 (395)
277 TIGR01829 AcAcCoA_reduct aceto 62.7 7.9 0.00017 34.3 3.3 32 7-38 50-88 (242)
278 PRK07577 short chain dehydroge 62.6 9.8 0.00021 33.6 3.9 30 10-39 44-79 (234)
279 PRK05872 short chain dehydroge 62.5 7.5 0.00016 36.2 3.2 32 8-39 58-96 (296)
280 KOG1205 Predicted dehydrogenas 62.4 8.1 0.00017 36.2 3.4 32 8-39 64-102 (282)
281 PRK07074 short chain dehydroge 62.4 8.1 0.00018 34.8 3.4 31 8-38 50-87 (257)
282 PRK06523 short chain dehydroge 62.3 6.5 0.00014 35.5 2.7 32 7-38 49-87 (260)
283 PRK06505 enoyl-(acyl carrier p 62.2 7.8 0.00017 35.6 3.3 29 10-38 60-95 (271)
284 PRK07984 enoyl-(acyl carrier p 62.1 8.8 0.00019 35.1 3.6 30 8-37 57-93 (262)
285 TIGR02197 heptose_epim ADP-L-g 62.0 17 0.00037 33.7 5.6 29 11-39 45-77 (314)
286 PRK05653 fabG 3-ketoacyl-(acyl 62.0 6.5 0.00014 34.8 2.6 33 6-38 53-92 (246)
287 PRK08862 short chain dehydroge 61.9 9.5 0.0002 34.1 3.7 32 6-37 53-92 (227)
288 PRK06720 hypothetical protein; 61.9 10 0.00022 32.5 3.7 33 6-38 64-103 (169)
289 PRK12748 3-ketoacyl-(acyl-carr 61.9 6.7 0.00015 35.4 2.7 33 6-38 66-105 (256)
290 PLN00015 protochlorophyllide r 61.6 9.2 0.0002 35.8 3.7 32 7-38 47-85 (308)
291 PRK06484 short chain dehydroge 61.6 5.7 0.00012 40.1 2.5 35 4-38 312-353 (520)
292 PTZ00023 glyceraldehyde-3-phos 61.6 11 0.00024 36.2 4.2 49 12-63 74-122 (337)
293 PRK07041 short chain dehydroge 61.6 8.9 0.00019 33.8 3.4 33 6-38 44-79 (230)
294 PRK07102 short chain dehydroge 61.5 6.7 0.00014 35.0 2.6 33 6-38 50-86 (243)
295 PRK12824 acetoacetyl-CoA reduc 61.4 7.8 0.00017 34.4 3.1 32 6-37 51-89 (245)
296 PRK07825 short chain dehydroge 61.3 9.4 0.0002 34.8 3.6 32 8-39 51-89 (273)
297 PRK07523 gluconate 5-dehydroge 61.3 8.1 0.00017 34.8 3.1 33 7-39 59-98 (255)
298 PRK08226 short chain dehydroge 61.1 9.5 0.00021 34.4 3.6 33 6-38 53-92 (263)
299 PRK07775 short chain dehydroge 61.0 8.6 0.00019 35.2 3.3 33 6-38 58-97 (274)
300 PRK06171 sorbitol-6-phosphate 61.0 9.1 0.0002 34.7 3.5 31 8-38 50-87 (266)
301 KOG1200 Mitochondrial/plastidi 60.9 11 0.00023 33.5 3.6 30 8-37 63-99 (256)
302 PRK05693 short chain dehydroge 60.9 12 0.00026 34.1 4.3 31 8-38 45-82 (274)
303 PF03807 F420_oxidored: NADP o 60.9 8.5 0.00019 29.0 2.8 37 23-62 56-94 (96)
304 PRK07578 short chain dehydroge 60.9 9.5 0.00021 32.9 3.4 29 10-38 34-65 (199)
305 PRK08690 enoyl-(acyl carrier p 60.9 8.6 0.00019 35.0 3.3 31 9-39 58-95 (261)
306 PRK08955 glyceraldehyde-3-phos 60.7 10 0.00022 36.4 3.8 42 18-64 80-121 (334)
307 PRK06701 short chain dehydroge 60.7 9.3 0.0002 35.5 3.5 33 6-38 95-134 (290)
308 TIGR02622 CDP_4_6_dhtase CDP-g 60.5 9.7 0.00021 36.3 3.7 30 8-37 53-84 (349)
309 PRK15425 gapA glyceraldehyde-3 60.4 9.8 0.00021 36.5 3.6 33 28-63 89-121 (331)
310 PRK12859 3-ketoacyl-(acyl-carr 60.3 9.1 0.0002 34.6 3.3 33 6-38 67-106 (256)
311 PRK07831 short chain dehydroge 60.2 9.6 0.00021 34.5 3.5 32 7-38 69-107 (262)
312 PRK07403 glyceraldehyde-3-phos 60.1 11 0.00024 36.1 4.0 50 11-63 73-122 (337)
313 PRK05599 hypothetical protein; 60.1 9.9 0.00021 34.2 3.5 32 8-39 50-88 (246)
314 cd07035 TPP_PYR_POX_like Pyrim 60.0 53 0.0011 27.1 7.8 76 22-104 3-80 (155)
315 PF08659 KR: KR domain; Inter 59.9 6.8 0.00015 33.7 2.3 35 5-39 51-92 (181)
316 PRK07729 glyceraldehyde-3-phos 59.8 14 0.0003 35.7 4.5 48 13-63 74-121 (343)
317 PRK06113 7-alpha-hydroxysteroi 59.8 7.5 0.00016 35.0 2.7 33 6-38 59-98 (255)
318 PLN02572 UDP-sulfoquinovose sy 59.7 11 0.00023 37.7 3.9 31 8-38 114-146 (442)
319 PRK07904 short chain dehydroge 59.5 11 0.00023 34.3 3.6 31 8-38 61-97 (253)
320 COG0667 Tas Predicted oxidored 59.4 14 0.00031 35.0 4.6 74 47-123 38-125 (316)
321 TIGR01692 HIBADH 3-hydroxyisob 59.4 16 0.00035 33.9 4.9 70 21-95 45-120 (288)
322 PLN02775 Probable dihydrodipic 59.4 73 0.0016 29.9 9.1 70 28-105 79-152 (286)
323 cd00755 YgdL_like Family of ac 59.3 17 0.00037 33.0 4.8 42 19-62 92-134 (231)
324 PF13466 STAS_2: STAS domain 59.1 26 0.00057 25.4 5.1 40 55-99 35-74 (80)
325 PRK06124 gluconate 5-dehydroge 59.1 7.6 0.00016 34.9 2.6 33 6-38 59-98 (256)
326 PRK07201 short chain dehydroge 58.9 15 0.00034 38.1 5.2 33 7-40 51-89 (657)
327 PRK08213 gluconate 5-dehydroge 58.8 11 0.00024 34.0 3.6 32 6-37 60-98 (259)
328 KOG3923 D-aspartate oxidase [A 58.6 8.8 0.00019 36.1 2.8 29 7-37 164-192 (342)
329 PF01370 Epimerase: NAD depend 58.4 7 0.00015 34.4 2.2 32 8-39 43-76 (236)
330 KOG1185 Thiamine pyrophosphate 58.4 28 0.0006 35.0 6.3 79 20-105 18-98 (571)
331 smart00851 MGS MGS-like domain 58.3 22 0.00048 26.7 4.7 38 21-59 46-89 (90)
332 PRK08936 glucose-1-dehydrogena 58.2 11 0.00023 34.1 3.4 33 6-38 56-95 (261)
333 TIGR01534 GAPDH-I glyceraldehy 58.1 11 0.00024 36.0 3.6 34 28-64 90-123 (327)
334 PRK05671 aspartate-semialdehyd 58.0 8.7 0.00019 36.9 2.8 49 13-66 53-101 (336)
335 PRK08978 acetolactate synthase 57.8 56 0.0012 33.4 8.9 79 20-105 5-85 (548)
336 PLN02686 cinnamoyl-CoA reducta 57.8 9.1 0.0002 37.0 3.0 32 8-39 108-139 (367)
337 PRK06728 aspartate-semialdehyd 57.7 58 0.0013 31.5 8.4 97 27-137 67-171 (347)
338 PRK06077 fabG 3-ketoacyl-(acyl 57.6 11 0.00025 33.5 3.5 33 6-38 55-94 (252)
339 PRK08177 short chain dehydroge 57.4 12 0.00026 33.0 3.5 32 8-39 46-82 (225)
340 cd00739 DHPS DHPS subgroup of 57.2 1.3E+02 0.0027 27.7 10.3 40 45-88 86-126 (257)
341 PRK08217 fabG 3-ketoacyl-(acyl 57.2 8.6 0.00019 34.2 2.6 33 6-38 53-92 (253)
342 COG1023 Gnd Predicted 6-phosph 57.1 17 0.00037 33.3 4.3 61 3-64 55-121 (300)
343 TIGR01496 DHPS dihydropteroate 57.1 1.2E+02 0.0026 27.8 10.2 39 45-88 85-124 (257)
344 COG1086 Predicted nucleoside-d 56.8 18 0.00039 37.0 4.9 31 7-37 302-334 (588)
345 TIGR01500 sepiapter_red sepiap 56.7 8.1 0.00018 34.9 2.4 32 7-38 55-97 (256)
346 COG2084 MmsB 3-hydroxyisobutyr 56.7 37 0.00081 31.8 6.7 63 23-94 52-124 (286)
347 PRK07201 short chain dehydroge 56.6 12 0.00025 39.1 3.8 33 6-38 419-458 (657)
348 PRK14874 aspartate-semialdehyd 56.6 14 0.00031 35.3 4.1 87 26-123 61-155 (334)
349 PLN02237 glyceraldehyde-3-phos 56.5 15 0.00032 36.6 4.2 50 11-63 148-197 (442)
350 PRK13535 erythrose 4-phosphate 56.4 12 0.00025 36.0 3.4 44 18-64 81-124 (336)
351 PRK06841 short chain dehydroge 56.4 14 0.0003 33.1 3.8 32 8-39 62-100 (255)
352 PRK07035 short chain dehydroge 56.3 12 0.00025 33.6 3.3 32 6-37 56-94 (252)
353 PRK05993 short chain dehydroge 56.3 9.1 0.0002 35.1 2.6 31 8-38 48-86 (277)
354 cd00423 Pterin_binding Pterin 56.3 1.1E+02 0.0023 28.0 9.7 41 45-89 86-127 (258)
355 smart00822 PKS_KR This enzymat 56.2 7.9 0.00017 31.9 2.0 34 6-39 52-92 (180)
356 PRK07710 acetolactate synthase 56.2 59 0.0013 33.5 8.8 80 19-105 19-100 (571)
357 cd01424 MGS_CPS_II Methylglyox 56.0 28 0.0006 27.2 5.0 40 20-60 57-100 (110)
358 PRK05557 fabG 3-ketoacyl-(acyl 55.9 14 0.0003 32.7 3.7 33 7-39 55-94 (248)
359 PRK07533 enoyl-(acyl carrier p 55.9 13 0.00028 33.7 3.6 30 9-38 62-98 (258)
360 TIGR02685 pter_reduc_Leis pter 55.4 11 0.00025 34.2 3.1 31 8-38 53-94 (267)
361 PRK07023 short chain dehydroge 55.2 12 0.00026 33.4 3.2 34 6-39 44-88 (243)
362 cd01423 MGS_CPS_I_III Methylgl 55.1 11 0.00024 30.0 2.6 39 20-59 61-105 (116)
363 COG0036 Rpe Pentose-5-phosphat 54.9 1.1E+02 0.0024 27.5 9.1 91 8-104 29-129 (220)
364 PRK08617 acetolactate synthase 54.8 61 0.0013 33.2 8.6 79 20-105 9-89 (552)
365 PRK09072 short chain dehydroge 54.6 15 0.00033 33.1 3.8 34 6-39 52-91 (263)
366 PRK09242 tropinone reductase; 54.5 9.2 0.0002 34.4 2.3 32 7-38 60-98 (257)
367 PRK08303 short chain dehydroge 54.4 13 0.00028 35.0 3.4 32 6-37 66-105 (305)
368 PRK09599 6-phosphogluconate de 54.4 67 0.0015 30.0 8.2 63 28-95 59-124 (301)
369 PRK06603 enoyl-(acyl carrier p 54.3 13 0.00028 33.8 3.3 29 10-38 61-96 (260)
370 PRK07985 oxidoreductase; Provi 54.0 9.5 0.00021 35.5 2.4 33 6-38 99-138 (294)
371 TIGR03693 ocin_ThiF_like putat 54.0 17 0.00036 37.7 4.2 57 2-59 178-235 (637)
372 PLN02778 3,5-epimerase/4-reduc 53.6 24 0.00051 33.0 5.0 28 12-39 39-68 (298)
373 PF01876 RNase_P_p30: RNase P 53.6 91 0.002 25.9 8.1 19 9-27 25-43 (150)
374 PTZ00325 malate dehydrogenase; 53.6 32 0.00068 32.9 5.8 71 11-95 59-129 (321)
375 TIGR01746 Thioester-redct thio 53.4 26 0.00056 33.0 5.3 33 7-39 61-99 (367)
376 PRK13656 trans-2-enoyl-CoA red 53.3 12 0.00027 36.6 3.0 34 4-37 100-140 (398)
377 PF02142 MGS: MGS-like domain 53.2 6.3 0.00014 30.2 0.9 37 22-59 52-94 (95)
378 KOG2741 Dimeric dihydrodiol de 53.1 94 0.002 30.0 8.7 91 21-121 63-159 (351)
379 TIGR01182 eda Entner-Doudoroff 53.1 29 0.00064 30.8 5.2 83 7-102 32-118 (204)
380 smart00481 POLIIIAc DNA polyme 53.0 27 0.00059 24.5 4.2 44 45-89 18-61 (67)
381 PRK06914 short chain dehydroge 52.9 11 0.00024 34.5 2.5 32 7-39 54-92 (280)
382 PRK07069 short chain dehydroge 52.7 18 0.00039 32.2 3.9 30 10-39 54-90 (251)
383 TIGR03603 cyclo_dehy_ocin bact 52.7 20 0.00044 34.1 4.4 37 22-60 145-183 (318)
384 TIGR00173 menD 2-succinyl-5-en 52.1 73 0.0016 31.6 8.4 77 21-104 5-84 (432)
385 PLN02350 phosphogluconate dehy 51.9 41 0.00089 34.1 6.6 74 18-96 62-138 (493)
386 PF02719 Polysacc_synt_2: Poly 51.8 11 0.00024 35.4 2.4 26 12-37 59-86 (293)
387 PF04481 DUF561: Protein of un 51.8 19 0.00042 32.3 3.7 56 32-94 17-72 (242)
388 PRK08085 gluconate 5-dehydroge 51.8 13 0.00029 33.3 2.9 32 7-38 58-96 (254)
389 PF01729 QRPTase_C: Quinolinat 51.5 33 0.00072 29.5 5.2 53 7-63 99-156 (169)
390 cd07038 TPP_PYR_PDC_IPDC_like 51.4 97 0.0021 26.1 8.0 76 22-105 3-81 (162)
391 TIGR01963 PHB_DH 3-hydroxybuty 51.3 20 0.00044 31.9 4.0 34 6-39 49-89 (255)
392 COG0800 Eda 2-keto-3-deoxy-6-p 51.3 27 0.00059 31.1 4.6 72 8-89 38-113 (211)
393 COG0373 HemA Glutamyl-tRNA red 51.3 20 0.00044 35.4 4.2 50 14-64 224-276 (414)
394 cd00452 KDPG_aldolase KDPG and 51.2 83 0.0018 27.2 7.8 74 7-90 28-105 (190)
395 PRK11613 folP dihydropteroate 51.2 1.4E+02 0.0031 27.9 9.7 48 11-62 92-140 (282)
396 PRK06057 short chain dehydroge 51.0 19 0.0004 32.4 3.8 29 10-38 54-89 (255)
397 TIGR01809 Shik-DH-AROM shikima 50.8 20 0.00043 33.4 4.0 76 20-107 182-265 (282)
398 PLN02206 UDP-glucuronate decar 50.6 23 0.00049 35.3 4.6 52 8-64 168-234 (442)
399 PRK09124 pyruvate dehydrogenas 50.5 77 0.0017 32.6 8.6 78 20-104 7-87 (574)
400 TIGR01289 LPOR light-dependent 50.5 15 0.00032 34.6 3.1 32 7-38 53-91 (314)
401 PRK06091 membrane protein FdrA 50.4 44 0.00095 34.3 6.5 61 26-90 115-176 (555)
402 PRK06725 acetolactate synthase 50.1 91 0.002 32.2 9.0 79 19-104 18-98 (570)
403 PF02776 TPP_enzyme_N: Thiamin 50.1 48 0.001 28.1 6.0 79 20-105 5-86 (172)
404 PRK07060 short chain dehydroge 50.0 19 0.00041 31.9 3.6 30 9-38 55-87 (245)
405 PLN02166 dTDP-glucose 4,6-dehy 49.9 21 0.00045 35.6 4.2 51 8-63 169-234 (436)
406 PRK07832 short chain dehydroge 49.9 20 0.00043 32.7 3.8 31 9-39 52-89 (272)
407 PRK05234 mgsA methylglyoxal sy 49.9 28 0.0006 29.0 4.3 42 20-61 65-112 (142)
408 TIGR01182 eda Entner-Doudoroff 49.8 81 0.0018 28.0 7.4 17 77-93 75-91 (204)
409 PRK06483 dihydromonapterin red 49.6 15 0.00032 32.5 2.9 30 9-38 48-84 (236)
410 PRK12384 sorbitol-6-phosphate 49.6 13 0.00029 33.3 2.6 32 7-38 53-91 (259)
411 PRK06550 fabG 3-ketoacyl-(acyl 49.6 15 0.00033 32.4 2.9 32 7-38 45-77 (235)
412 PRK12742 oxidoreductase; Provi 49.5 18 0.00039 31.9 3.4 30 9-38 53-85 (237)
413 PRK08322 acetolactate synthase 49.5 90 0.0019 31.9 8.9 79 20-105 5-85 (547)
414 TIGR01831 fabG_rel 3-oxoacyl-( 49.4 13 0.00028 33.0 2.4 33 6-38 47-86 (239)
415 PLN00125 Succinyl-CoA ligase [ 49.4 35 0.00077 32.2 5.4 63 21-86 60-125 (300)
416 PRK07789 acetolactate synthase 49.2 1E+02 0.0022 32.1 9.3 89 9-104 21-115 (612)
417 PRK09436 thrA bifunctional asp 49.1 43 0.00094 36.3 6.7 94 19-120 534-634 (819)
418 PRK08324 short chain dehydroge 49.1 13 0.00028 39.2 2.7 32 8-39 471-509 (681)
419 PRK06101 short chain dehydroge 49.0 22 0.00047 31.7 3.9 32 7-38 46-81 (240)
420 TIGR01296 asd_B aspartate-semi 48.9 22 0.00047 34.2 4.0 87 26-123 59-153 (339)
421 PRK06882 acetolactate synthase 48.8 85 0.0018 32.3 8.6 79 19-104 7-88 (574)
422 KOG1611 Predicted short chain- 48.4 22 0.00047 32.2 3.6 33 6-38 53-94 (249)
423 COG1671 Uncharacterized protei 48.4 60 0.0013 27.3 5.9 50 8-65 43-95 (150)
424 PLN02696 1-deoxy-D-xylulose-5- 48.1 79 0.0017 31.7 7.7 65 19-87 138-204 (454)
425 PRK08155 acetolactate synthase 47.6 97 0.0021 31.8 8.8 79 19-104 16-97 (564)
426 TIGR00873 gnd 6-phosphoglucona 47.3 81 0.0017 31.8 7.9 76 16-96 51-129 (467)
427 KOG1610 Corticosteroid 11-beta 47.2 69 0.0015 30.5 6.8 32 6-37 75-115 (322)
428 TIGR02418 acolac_catab acetola 47.2 1.1E+02 0.0023 31.3 9.0 78 21-105 4-83 (539)
429 PRK06924 short chain dehydroge 47.0 13 0.00029 33.2 2.1 33 5-37 46-89 (251)
430 COG1088 RfbB dTDP-D-glucose 4, 47.0 21 0.00046 33.7 3.4 59 7-65 51-128 (340)
431 PRK12747 short chain dehydroge 47.0 23 0.00049 31.7 3.6 32 7-38 54-98 (252)
432 PRK08040 putative semialdehyde 47.0 80 0.0017 30.4 7.5 97 27-135 65-169 (336)
433 COG1087 GalE UDP-glucose 4-epi 46.9 40 0.00087 31.9 5.2 29 9-37 46-76 (329)
434 PRK06048 acetolactate synthase 46.7 1.1E+02 0.0023 31.5 8.9 79 19-104 11-91 (561)
435 PTZ00187 succinyl-CoA syntheta 45.9 38 0.00082 32.3 5.0 39 20-61 78-118 (317)
436 PLN02470 acetolactate synthase 45.9 96 0.0021 32.1 8.5 80 19-105 16-98 (585)
437 cd01490 Ube1_repeat2 Ubiquitin 45.9 28 0.0006 34.7 4.3 38 23-62 93-130 (435)
438 PRK08266 hypothetical protein; 45.5 1.1E+02 0.0024 31.2 8.7 79 20-105 8-90 (542)
439 COG2185 Sbm Methylmalonyl-CoA 45.5 73 0.0016 26.6 6.0 63 21-87 31-96 (143)
440 TIGR02717 AcCoA-syn-alpha acet 45.4 52 0.0011 32.9 6.2 63 21-86 57-125 (447)
441 PRK12828 short chain dehydroge 45.3 28 0.0006 30.5 3.9 32 8-39 55-93 (239)
442 PF13561 adh_short_C2: Enoyl-( 45.2 11 0.00023 33.8 1.2 32 9-40 46-85 (241)
443 KOG3007 Mu-crystallin [Amino a 45.1 9.5 0.0002 35.4 0.8 75 2-83 181-255 (333)
444 TIGR01851 argC_other N-acetyl- 44.9 16 0.00035 34.6 2.4 79 22-105 43-129 (310)
445 PRK05858 hypothetical protein; 44.5 1.2E+02 0.0027 30.9 9.0 79 20-105 9-89 (542)
446 TIGR02632 RhaD_aldol-ADH rhamn 44.2 21 0.00046 37.7 3.4 32 8-39 466-504 (676)
447 PRK08979 acetolactate synthase 44.1 1.1E+02 0.0023 31.6 8.5 79 19-104 7-88 (572)
448 PRK06552 keto-hydroxyglutarate 43.8 1.2E+02 0.0026 27.1 7.7 83 7-102 37-126 (213)
449 PRK07340 ornithine cyclodeamin 43.7 6.8 0.00015 37.0 -0.4 41 21-66 181-221 (304)
450 PRK06552 keto-hydroxyglutarate 43.6 49 0.0011 29.5 5.2 66 9-87 68-134 (213)
451 PRK06546 pyruvate dehydrogenas 43.4 1.1E+02 0.0023 31.7 8.4 78 20-104 7-87 (578)
452 PLN02522 ATP citrate (pro-S)-l 43.3 45 0.00097 34.7 5.4 64 21-86 68-134 (608)
453 PRK06015 keto-hydroxyglutarate 43.1 52 0.0011 29.2 5.1 85 7-104 28-116 (201)
454 PF01081 Aldolase: KDPG and KH 43.0 37 0.0008 30.0 4.2 83 7-102 32-118 (196)
455 PRK06457 pyruvate dehydrogenas 43.0 1.2E+02 0.0026 31.0 8.6 79 20-105 6-86 (549)
456 PRK06276 acetolactate synthase 43.0 1.3E+02 0.0028 31.1 8.9 79 20-105 5-85 (586)
457 TIGR01302 IMP_dehydrog inosine 43.0 1.9E+02 0.0042 28.9 9.8 79 7-92 235-337 (450)
458 TIGR00518 alaDH alanine dehydr 43.0 38 0.00083 32.9 4.7 24 14-37 216-239 (370)
459 PF03446 NAD_binding_2: NAD bi 42.9 30 0.00065 29.1 3.6 53 9-62 58-119 (163)
460 PRK09287 6-phosphogluconate de 42.7 93 0.002 31.3 7.5 75 17-96 43-120 (459)
461 PRK05848 nicotinate-nucleotide 42.5 69 0.0015 29.8 6.1 52 8-63 202-258 (273)
462 TIGR00118 acolac_lg acetolacta 42.1 1.2E+02 0.0026 31.0 8.5 79 20-105 5-86 (558)
463 PRK00366 ispG 4-hydroxy-3-meth 42.1 84 0.0018 30.4 6.6 78 9-90 56-138 (360)
464 KOG4169 15-hydroxyprostaglandi 42.0 21 0.00045 32.5 2.4 79 7-96 55-142 (261)
465 PRK06953 short chain dehydroge 41.6 29 0.00062 30.4 3.4 31 9-39 46-81 (222)
466 PLN02700 homoserine dehydrogen 41.6 1.4E+02 0.0029 29.3 8.2 83 28-120 109-192 (377)
467 PF04273 DUF442: Putative phos 41.4 1.1E+02 0.0023 24.3 6.3 45 18-62 16-64 (110)
468 TIGR02992 ectoine_eutC ectoine 41.4 12 0.00025 35.8 0.8 41 21-66 187-228 (326)
469 PRK11150 rfaD ADP-L-glycero-D- 41.0 42 0.00092 31.1 4.6 26 12-37 43-77 (308)
470 cd01491 Ube1_repeat1 Ubiquitin 40.9 15 0.00032 34.5 1.4 38 23-62 100-137 (286)
471 KOG2017 Molybdopterin synthase 40.6 41 0.00088 32.5 4.2 43 18-63 146-189 (427)
472 PRK08611 pyruvate oxidase; Pro 40.6 1.4E+02 0.0031 30.8 8.7 79 20-105 8-90 (576)
473 PRK07114 keto-hydroxyglutarate 40.5 58 0.0013 29.4 5.1 83 7-102 39-129 (222)
474 COG1179 Dinucleotide-utilizing 40.5 87 0.0019 28.8 6.1 46 16-63 108-154 (263)
475 TIGR02720 pyruv_oxi_spxB pyruv 40.2 1.5E+02 0.0032 30.6 8.8 77 21-104 4-84 (575)
476 PRK08261 fabG 3-ketoacyl-(acyl 40.0 36 0.00078 33.7 4.1 31 9-39 258-295 (450)
477 PLN02996 fatty acyl-CoA reduct 39.7 28 0.00062 35.2 3.4 32 7-38 84-122 (491)
478 PRK07114 keto-hydroxyglutarate 39.7 92 0.002 28.0 6.3 46 20-66 6-51 (222)
479 PLN02438 inositol-3-phosphate 39.5 48 0.001 33.5 4.8 56 46-105 266-324 (510)
480 PRK08199 thiamine pyrophosphat 39.3 1.5E+02 0.0032 30.4 8.6 80 19-105 11-93 (557)
481 cd05212 NAD_bind_m-THF_DH_Cycl 39.3 19 0.00041 30.0 1.7 52 8-65 52-103 (140)
482 PLN02260 probable rhamnose bio 39.2 36 0.00078 35.7 4.2 28 11-38 409-438 (668)
483 COG0757 AroQ 3-dehydroquinate 39.1 38 0.00081 28.1 3.3 60 3-64 39-101 (146)
484 PRK11559 garR tartronate semia 39.0 43 0.00094 31.1 4.3 60 22-85 52-117 (296)
485 TIGR03457 sulphoacet_xsc sulfo 38.7 1.6E+02 0.0034 30.5 8.7 78 20-104 6-85 (579)
486 PRK06978 nicotinate-nucleotide 38.6 78 0.0017 29.8 5.8 53 7-63 224-278 (294)
487 PRK06965 acetolactate synthase 38.6 1.4E+02 0.0031 30.8 8.4 83 15-104 20-105 (587)
488 cd02908 Macro_Appr_pase_like M 38.2 31 0.00067 29.3 2.9 37 9-54 2-38 (165)
489 PRK11863 N-acetyl-gamma-glutam 38.2 26 0.00057 33.3 2.7 40 24-66 46-85 (313)
490 PRK08527 acetolactate synthase 38.0 1.5E+02 0.0033 30.4 8.5 80 19-105 6-88 (563)
491 KOG1201 Hydroxysteroid 17-beta 37.9 61 0.0013 30.6 4.9 30 8-37 87-123 (300)
492 TIGR00640 acid_CoA_mut_C methy 37.5 2.2E+02 0.0047 23.3 7.7 64 15-82 13-81 (132)
493 PRK07979 acetolactate synthase 37.4 1.6E+02 0.0034 30.3 8.5 78 20-104 8-88 (574)
494 PRK06843 inosine 5-monophospha 37.2 2.7E+02 0.0059 27.5 9.5 9 148-156 299-307 (404)
495 TIGR03394 indol_phenyl_DC indo 37.2 1.5E+02 0.0032 30.4 8.1 78 21-105 5-85 (535)
496 PRK07525 sulfoacetaldehyde ace 37.1 1.7E+02 0.0036 30.3 8.7 79 19-104 9-89 (588)
497 PRK06466 acetolactate synthase 37.1 1.5E+02 0.0033 30.5 8.3 79 20-105 8-89 (574)
498 TIGR00872 gnd_rel 6-phosphoglu 36.6 58 0.0013 30.4 4.8 74 17-96 48-124 (298)
499 TIGR00872 gnd_rel 6-phosphoglu 36.6 1.2E+02 0.0027 28.2 7.0 35 27-62 84-118 (298)
500 COG0169 AroE Shikimate 5-dehyd 36.6 15 0.00033 34.4 0.8 69 28-107 190-260 (283)
No 1
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-43 Score=334.22 Aligned_cols=305 Identities=22% Similarity=0.255 Sum_probs=243.2
Q ss_pred CCCCceEEEeCCCHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcE
Q 018848 6 GKNSEFAEVNIYNEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPA 85 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~ 85 (349)
+++++++++|+.|.+++.+++++.|+||||++||+. +.+++||+++|+||||+|...+.. .++++.|+++|+++
T Consensus 46 ~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~---~~i~ka~i~~gv~yvDts~~~~~~---~~~~~~a~~Agit~ 119 (389)
T COG1748 46 GGKVEALQVDAADVDALVALIKDFDLVINAAPPFVD---LTILKACIKTGVDYVDTSYYEEPP---WKLDEEAKKAGITA 119 (389)
T ss_pred cccceeEEecccChHHHHHHHhcCCEEEEeCCchhh---HHHHHHHHHhCCCEEEcccCCchh---hhhhHHHHHcCeEE
Confidence 457999999999999999999999999999988887 799999999999999999876552 57899999999999
Q ss_pred EecCCcCcchhHHHHHHHHHHHhcccCCCCcEEEEEEeecCCCCCch------hhHHHHHHHhCCcceeeeCCeEEEecC
Q 018848 86 ITTGGIYPGVSNVMAAELVRVARNESKGEPERLRFSYYTAGTGGAGP------TILATSFLLLGEEVVAYNKGEEITLEP 159 (349)
Q Consensus 86 v~~~G~~PGls~lla~~~~~~l~~~~~~~v~~i~i~~~~~g~~~~~~------~~~~~~l~~~~~p~~~~~~G~~~~v~~ 159 (349)
|++||++||++|+++++++++ .+|++++|+++.+..+..+.+| .+..+++.++.+|..+|+||+|++++|
T Consensus 120 v~~~G~dPGi~nv~a~~a~~~----~~~~i~si~iy~g~~g~~~~~~l~ya~tws~e~~l~e~~~p~~~~~~Gk~~~v~~ 195 (389)
T COG1748 120 VLGCGFDPGITNVLAAYAAKE----LFDEIESIDIYVGGLGEHGDNPLGYATTWSPEINLREYTRPARYWENGKWVEVDP 195 (389)
T ss_pred EcccCcCcchHHHHHHHHHHH----hhccccEEEEEEecCCCCCCCCccceeeecHHHhHHHhcCceEEEeCCEEEEecC
Confidence 999999999999999999985 3569999999764333333112 133447899999999999999999999
Q ss_pred CCcceeeEccCCceeeeEEeecCCcccchhhhcC-CCeEEEEeecChhHHHHHHHHHHhhhhhccccchh--------HH
Q 018848 160 YSGMLSVDFGKGIGRKDVFLLNLPEVRSAREVLG-VPTVSARFGTAPFFWNWGMVTMQRLFPAEYLRDRS--------KV 230 (349)
Q Consensus 160 ~~~~~~~~fp~~~G~~~~~~~~~~e~~tl~~~~~-v~~v~~~~~~~~~~~~~~l~~~~~l~~~~~l~~~~--------~v 230 (349)
++..+.++||. .|...+|.++|+|+.+|.++++ +.+.++++.+..+ ++++.++.|..+++++.++ ++
T Consensus 196 ~~~~~~~~~~~-~G~~~~y~~~~~el~sL~~~i~~~~~~~~~~t~r~~---g~~~~i~~L~~lGll~~~~v~~~~~i~p~ 271 (389)
T COG1748 196 LEEREVFEFPV-IGYGDVYAFYHDELRSLVKTIPGVVRTRFEMTFRYP---GHLEVIKALRDLGLLSREPVKVQQEIVPL 271 (389)
T ss_pred cccccccccCC-CCceeEEecCCccHHHHHHhCcccceeeEEeecCcc---cHHHHHHHHHHcCCCcccccccccccchH
Confidence 99999899996 8899999999999999999997 7788888887622 3444555556778777642 12
Q ss_pred HHHHHhhHHHHhhcccCCCceEEEEEEEEE-cCCCeeEeeee------------cCCcchhhhHHHHHHHHHHHcCC-CC
Q 018848 231 QQLVQLFDPVVRAFDGIAGERVSMRVDLEC-TDGRNTVGIFS------------HRRLSVSVGTAIAAFVLAVLEGA-TQ 296 (349)
Q Consensus 231 ~~l~~~~~~l~~~~~~~~~~~~~~~v~v~g-~~G~~~~~~~~------------~~~~~~~Ta~~aa~~a~~ll~G~-~~ 296 (349)
+.+.+++...... .+...+..++.++++| +||+.....|. .++++.+|+++++++|+++++|+ ..
T Consensus 272 eflk~vl~~~~s~-~~~~~d~t~i~v~v~G~kdG~~~~~~y~~~~~~~~~~~~~~~ais~ttg~pa~~~a~ll~~g~~~~ 350 (389)
T COG1748 272 EFLKAVLPDPLSL-APDYKDVTVIGVEVKGTKDGRDKTVFYNVKDHAEAYSEVGSSAISYTTGVPAAIGAELLAEGEWET 350 (389)
T ss_pred HHHHHhccccccc-CCCcCceEEEEEEEEEEEcCeeeEEEecchhhHHHhhccccceeehhccccHHHHHHHHHcCCCCc
Confidence 2333332221111 1223677899999999 79987644222 37889999999999999999998 58
Q ss_pred CcccCCcCCCCcchhhHHHHHHHhcccchhhhhcc--CCcccccCc
Q 018848 297 PGVWFPEEPEGIAIEAREVLLKRASQGTINFVMNK--APWMVETEP 340 (349)
Q Consensus 297 ~GV~~pe~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~ 340 (349)
+||+.||+++.+++. +.+++ +||+...+.
T Consensus 351 ~Gv~~~E~l~~~~~~---------------~~~~~~~l~~~~~~~~ 381 (389)
T COG1748 351 PGVVNPEELGPDPFL---------------EKLLIRGLPWRGVENE 381 (389)
T ss_pred CcEecHHHhCCChhH---------------HHHhhccCcchhcccC
Confidence 899999999988877 33333 899987753
No 2
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=100.00 E-value=1.5e-36 Score=295.88 Aligned_cols=304 Identities=24% Similarity=0.300 Sum_probs=218.0
Q ss_pred cCCCCceEEEeCCCHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCc
Q 018848 5 LGKNSEFAEVNIYNEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIP 84 (349)
Q Consensus 5 l~~~~~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~ 84 (349)
.+.+++++++|+.|.++|.++++++|+||||+|||+. .+++++|+++|+||||++. +.+.+.+++++|+++|++
T Consensus 44 ~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~~~---~~v~~~~i~~g~~yvD~~~---~~~~~~~l~~~a~~~g~~ 117 (386)
T PF03435_consen 44 LGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPFFG---EPVARACIEAGVHYVDTSY---VTEEMLALDEEAKEAGVT 117 (386)
T ss_dssp TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGGGH---HHHHHHHHHHT-EEEESS----HHHHHHHCHHHHHHTTSE
T ss_pred cccceeEEEEecCCHHHHHHHHhcCCEEEECCccchh---HHHHHHHHHhCCCeeccch---hHHHHHHHHHHHHhhCCE
Confidence 4568999999999999999999999999999999954 6999999999999999654 467778999999999999
Q ss_pred EEecCCcCcchhHHHHHHHHHHHhcccCCCCcEEEEEEeecCC--C-----CC---chhhHHHHHHHhCCcceeeeCCeE
Q 018848 85 AITTGGIYPGVSNVMAAELVRVARNESKGEPERLRFSYYTAGT--G-----GA---GPTILATSFLLLGEEVVAYNKGEE 154 (349)
Q Consensus 85 ~v~~~G~~PGls~lla~~~~~~l~~~~~~~v~~i~i~~~~~g~--~-----~~---~~~~~~~~l~~~~~p~~~~~~G~~ 154 (349)
+|++||++||++|++++++++++. ...++++++++ ++ ++. + +. ...+....++++.+|..+|+||++
T Consensus 118 ~l~~~G~~PGl~~~~a~~~~~~~~-~~~~~v~~~~~-~~-g~~~~p~~~~~~~~~~~~ws~~~~l~e~~~~~~~~~~G~~ 194 (386)
T PF03435_consen 118 ALPGCGFDPGLSNLLARYAADELD-AEGDEVESVDI-YV-GGLPAPEAPDNPLGYKFTWSPEGVLEEYSPPARVYRDGKW 194 (386)
T ss_dssp EE-S-BTTTBHHHHHHHHHHHHHH-HTTHEEEEEEE-EE-EEEEEGCG--TTTSEEBSS-HHHHHHHHCS-EEEEETTEE
T ss_pred EEeCcccccchHHHHHHHHHHHhh-hhcccceEEEE-EE-ccccCCCCCCCCcccceeeeehhhHHhhcccceEeeCCEE
Confidence 999999999999999999998764 23447888885 33 444 1 10 123445578889999999999999
Q ss_pred EEecCCCcceeeEccCCceeeeEEeecCCcccchhhhcC-CC---eEEEEeecChhHHHHHHHHHHhhhhhccccchhH-
Q 018848 155 ITLEPYSGMLSVDFGKGIGRKDVFLLNLPEVRSAREVLG-VP---TVSARFGTAPFFWNWGMVTMQRLFPAEYLRDRSK- 229 (349)
Q Consensus 155 ~~v~~~~~~~~~~fp~~~G~~~~~~~~~~e~~tl~~~~~-v~---~v~~~~~~~~~~~~~~l~~~~~l~~~~~l~~~~~- 229 (349)
+++++++..++++||.+++...++.++++|..++++.+. ++ ++.+++...+.+.+ .++.+..+++++.+..
T Consensus 195 ~~v~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~~----~~~~l~~lgl~~~~~~~ 270 (386)
T PF03435_consen 195 VEVPPFSEEERVDFPYPIGPGGAYEAFHPEDSTLTRSFYGLPEVRNVIRKTLRYPGFLN----VMKLLKDLGLLSEEPVY 270 (386)
T ss_dssp EEEETTTTCCCETEEE-SSTTECEEEEEECBGTTHHHHTT-TTTSEEEEEEEEETTHHH----HHHHHHHTTTTSHCBEG
T ss_pred EEecCccccceeeeeeEecccceeeeecCcCCceeeEeecCCCcccEEEEEeeEhhHHH----HHHHHHhhcccCCcccc
Confidence 999999999989999888888999988888888888774 33 67777666665444 3334445666665421
Q ss_pred -----HHHHHHhhHHHHhhcccCCCceEEEEEEEEE--cCCCeeEe---ee---------ecCCcchhhhHHHHHHHHHH
Q 018848 230 -----VQQLVQLFDPVVRAFDGIAGERVSMRVDLEC--TDGRNTVG---IF---------SHRRLSVSVGTAIAAFVLAV 290 (349)
Q Consensus 230 -----v~~l~~~~~~l~~~~~~~~~~~~~~~v~v~g--~~G~~~~~---~~---------~~~~~~~~Ta~~aa~~a~~l 290 (349)
.+.+.....+..+. .+...+...++++++| ++|+.... .. +.++|+++||++++++|+++
T Consensus 271 ~~~~p~~~l~~~l~~~~~~-~~~~~d~~~~~v~v~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~m~~~tg~~~ai~a~ll 349 (386)
T PF03435_consen 271 VYVSPRDLLAALLEKRLRP-GPGERDMVVLRVEVEGWDKDGKPVRRTSYLVYPSGDPIETGGSAMARTTGIPAAIAAQLL 349 (386)
T ss_dssp GGSCHHHHHHHHHHHHSCT-TTT-SEEEEEEEEEEEEETTCEEEEEEEEEEEEEEECCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHhhChhhcCC-cccccCceeEEEEEEEEeCCCCEEEEEEeeceecccccCCCCCccHHHhhHHHHHHHHHH
Confidence 22233332222111 1234567889999998 57876531 11 13588999999999999999
Q ss_pred HcCCC-CCcccCCcCCCCcchhhHHHHHHHhccc
Q 018848 291 LEGAT-QPGVWFPEEPEGIAIEAREVLLKRASQG 323 (349)
Q Consensus 291 l~G~~-~~GV~~pe~~~~~~~~~~~~~~~~~~~g 323 (349)
++|+. .+||++||++ -.+.--...+-++.+.|
T Consensus 350 ~~g~~~~~GV~~PE~~-~~~~~~~~~l~~l~~~G 382 (386)
T PF03435_consen 350 ADGEITRPGVVPPEAA-FDPDPFEDLLEELAKRG 382 (386)
T ss_dssp HTTSSH-SEEE-SHHC-CSHHHHHHHHHHHHHHC
T ss_pred HCCCcCCCeEECHHHh-CCCchHHHHHHHHHcCC
Confidence 99996 9999999997 23333345556655664
No 3
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=99.95 E-value=6.2e-26 Score=239.54 Aligned_cols=284 Identities=18% Similarity=0.230 Sum_probs=201.0
Q ss_pred CCceEEEeCCCHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEe
Q 018848 8 NSEFAEVNIYNEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAIT 87 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~ 87 (349)
+++++++|+.|.+++.++++++|+||+|+++++. ..++++|+++|+||+|.+.. .+++.+++++|+++|+++++
T Consensus 628 ~~~~v~lDv~D~e~L~~~v~~~DaVIsalP~~~H---~~VAkaAieaGkHvv~eky~---~~e~~~L~e~Ak~AGV~~m~ 701 (1042)
T PLN02819 628 NAEAVQLDVSDSESLLKYVSQVDVVISLLPASCH---AVVAKACIELKKHLVTASYV---SEEMSALDSKAKEAGITILC 701 (1042)
T ss_pred CCceEEeecCCHHHHHHhhcCCCEEEECCCchhh---HHHHHHHHHcCCCEEECcCC---HHHHHHHHHHHHHcCCEEEE
Confidence 5788999999999999999999999999965444 69999999999999999843 46667889999999999999
Q ss_pred cCCcCcchhHHHHHHHHHHHhcccCCCCcEEEEEEeecCCCC--Cc----hhhHHH----HHHHhCCcceeeeCCeEEEe
Q 018848 88 TGGIYPGVSNVMAAELVRVARNESKGEPERLRFSYYTAGTGG--AG----PTILAT----SFLLLGEEVVAYNKGEEITL 157 (349)
Q Consensus 88 ~~G~~PGls~lla~~~~~~l~~~~~~~v~~i~i~~~~~g~~~--~~----~~~~~~----~l~~~~~p~~~~~~G~~~~v 157 (349)
++|++||+++++++.++++.+ ...+++.++.. + +||.+. .. .+.|+| ++.++.+|+.+++||+++.+
T Consensus 702 e~GlDPGid~~lA~~~Id~~~-~~~GkI~s~~s-~-~GGLP~pe~~~npL~YkfsWSp~gvi~~~~npa~~i~~G~~~~V 778 (1042)
T PLN02819 702 EMGLDPGIDHMMAMKMIDDAH-ERGGKVKSFTS-Y-CGGLPSPEAANNPLAYKFSWNPAGAIKAGQNPAVYKSNGQIIHV 778 (1042)
T ss_pred CCccCHHHHHHHHHHHHHhhc-ccCCcEEEEEE-E-EcCccCcccCCCcccccccCCHHHHHHHhcCcceeeECCEEEEe
Confidence 999999999999999998653 23578888876 3 377763 11 245666 68889999999999999999
Q ss_pred cC---CCcceeeEccCCceeeeEEeecCCcccchhhhcCCC-eEEEEeecChhHHHHHHHHHHhhhhhccccchh-----
Q 018848 158 EP---YSGMLSVDFGKGIGRKDVFLLNLPEVRSAREVLGVP-TVSARFGTAPFFWNWGMVTMQRLFPAEYLRDRS----- 228 (349)
Q Consensus 158 ~~---~~~~~~~~fp~~~G~~~~~~~~~~e~~tl~~~~~v~-~v~~~~~~~~~~~~~~l~~~~~l~~~~~l~~~~----- 228 (349)
++ |+..+.++|+. ++......+|+.+.....+.++++ ++.+.+.... .+.++...++.|..+||+++++
T Consensus 779 ~~~~l~~~~~~~~~~~-~p~~~lE~~pNRdSl~y~~~Ygi~~~a~tl~RgTL-Ry~Gf~~~~~~l~~LGl~~~~~~~~~~ 856 (1042)
T PLN02819 779 DGENLFASAVRFRLPN-LPAFALECLPNRDSLVYGELYGIEKEAATIFRGTL-RYEGFSMIMATLSKLGLFDSENHPLLS 856 (1042)
T ss_pred cchhhhhhcccccccc-CCCcceEEccCCCcchhHHHhCCCcccceeeEEEE-ecCCHHHHHHHHHHcCCCCCCcccccc
Confidence 98 87777887753 222344466778877777788876 5544222111 1122222333333344433210
Q ss_pred -----------------------------------------------------------------HHHH----HHHhhHH
Q 018848 229 -----------------------------------------------------------------KVQQ----LVQLFDP 239 (349)
Q Consensus 229 -----------------------------------------------------------------~v~~----l~~~~~~ 239 (349)
..+. +..+...
T Consensus 857 ~~~~~tw~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~v~~~~~tp~d~l~~~ 936 (1042)
T PLN02819 857 TGKRTTYGALLDALLLQDGHNENGPLAGEEEISKRLAKLGHSKNRETAAKAAKTIVFLGLDEETEVPKSCKSIFDVTCYR 936 (1042)
T ss_pred CCCCCCHHHHHHHHhCCCCcccccccccchhHHHHHHhhhcccchhhHHHHHHHhhhhcccccccccCCCCCHHHHHHHH
Confidence 0000 0000111
Q ss_pred HHhhc--ccCCCceEEEEEEEEEc--CCCe-eEe-----eeec-------CCcchhhhHHHHHHHHHHHcCCC-CCcccC
Q 018848 240 VVRAF--DGIAGERVSMRVDLECT--DGRN-TVG-----IFSH-------RRLSVSVGTAIAAFVLAVLEGAT-QPGVWF 301 (349)
Q Consensus 240 l~~~~--~~~~~~~~~~~v~v~g~--~G~~-~~~-----~~~~-------~~~~~~Ta~~aa~~a~~ll~G~~-~~GV~~ 301 (349)
|.... .+.++|.+.|++++.+. +|++ ... .++. ++|++|||+++|++|+++++|++ .+||+.
T Consensus 937 Le~kl~y~~~e~DmVvl~h~~~~e~~~g~~~~~~t~tlv~~Gd~~~g~~~SAMAktVG~P~aiaa~lil~g~I~~~Gv~~ 1016 (1042)
T PLN02819 937 MEEKLAYSGNEQDMVLLHHEVEVEFPDSKRIEKHSATLLEFGEIKNGRTTTAMAKTVGIPAAIGALLLLEGKIKTRGVLR 1016 (1042)
T ss_pred HHHHhCCCCCCCeEEEEEEEEEEEECCCCceEEEEEEEEEecCcCCCCcccHHHHhhcchHHHHHHHHhCCCcCCCeeeC
Confidence 11111 23567889999999873 7765 322 2232 58999999999999999999996 689999
Q ss_pred C
Q 018848 302 P 302 (349)
Q Consensus 302 p 302 (349)
|
T Consensus 1017 P 1017 (1042)
T PLN02819 1017 P 1017 (1042)
T ss_pred C
Confidence 9
No 4
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=99.94 E-value=3.2e-26 Score=209.67 Aligned_cols=312 Identities=19% Similarity=0.186 Sum_probs=200.7
Q ss_pred cccCCCCceEEEeCCCHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHH-HHHHHHHc
Q 018848 3 STLGKNSEFAEVNIYNEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKS-FKDRAIAA 81 (349)
Q Consensus 3 ~~l~~~~~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~-l~~~a~~~ 81 (349)
.+||+ ++..+++.+++.+.+++.+.+||+||+|||..++. +++++|+.+|+||+||+||..|.+.+.+ +|++|+++
T Consensus 48 ~~LG~--~~~~~p~~~p~~~~~~~~~~~VVlncvGPyt~~g~-plv~aC~~~GTdY~DiTGEi~~fe~~i~~yh~~A~~~ 124 (382)
T COG3268 48 ASLGP--EAAVFPLGVPAALEAMASRTQVVLNCVGPYTRYGE-PLVAACAAAGTDYADITGEIMFFENSIDLYHAQAADA 124 (382)
T ss_pred HhcCc--cccccCCCCHHHHHHHHhcceEEEecccccccccc-HHHHHHHHhCCCeeeccccHHHHHHHHHHHHHHHHhc
Confidence 34564 46667777799999999999999999999999995 9999999999999999999999998865 59999999
Q ss_pred CCcEEecCCcCcchhHHHHHHHHHHHhcccCCCCcEEEEEEeecCCCCCchhhHHHHHHHhCCcceeeeCCeEEEecCCC
Q 018848 82 NIPAITTGGIYPGVSNVMAAELVRVARNESKGEPERLRFSYYTAGTGGAGPTILATSFLLLGEEVVAYNKGEEITLEPYS 161 (349)
Q Consensus 82 g~~~v~~~G~~PGls~lla~~~~~~l~~~~~~~v~~i~i~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~G~~~~v~~~~ 161 (349)
|+.++++|||+.-.||+-+..+.++......+++-..++.+..-...+.|.+++.+..+.+.......++||.+.++..-
T Consensus 125 Ga~Ii~~cGFDsIPsDl~v~~l~~~~~~d~~~~~~~t~l~l~s~t~~g~S~GTaat~~e~l~~~~~~~~~gr~~~~P~~~ 204 (382)
T COG3268 125 GARIIPGCGFDSIPSDLGVYALLKQALPDGTEELIATHLALGSFTGSGISGGTAATSVEGLATAGKDPEAGRLLRVPYAL 204 (382)
T ss_pred CCEEeccCCCCcCccchHHHHHHHhhCcccccchhhhheeeeecccCCcccccHHHHHHHHHhccCCcccCceeccCcee
Confidence 99999999999999999666555542111112222333322111112477889999999988888899999999887554
Q ss_pred ccee---eEccCCceeeeEEeecCCcccchhhhcCCC---eEEEEeecChhHHHHHHHHHHhhhhhccccchhHHHH-HH
Q 018848 162 GMLS---VDFGKGIGRKDVFLLNLPEVRSAREVLGVP---TVSARFGTAPFFWNWGMVTMQRLFPAEYLRDRSKVQQ-LV 234 (349)
Q Consensus 162 ~~~~---~~fp~~~G~~~~~~~~~~e~~tl~~~~~v~---~v~~~~~~~~~~~~~~l~~~~~l~~~~~l~~~~~v~~-l~ 234 (349)
..++ ++||.+-|.+..-.++|+++.+...+..++ ++..|.-..+- +......+.++.+ ++.+. .++. +.
T Consensus 205 ~~~r~~~iDf~~~rg~~~a~~~~Wg~V~a~~~t~iv~rsn~l~~~~~~~pv-~~~a~~~~~~~~~--ll~~~-~~~~~~r 280 (382)
T COG3268 205 KKRRGAEIDFPSRRGRRLAPTLPWGFVAAAFNTTIVPRSNALEVWIYAAPV-LALAGRGIGALLP--LLGSA-YVRDLLR 280 (382)
T ss_pred ccCCCCCCCcccCCccccCcccCchhhhhhhccCccccccceeeeechhHH-HHHHHhccchhhh--hhhhH-HHhhhhH
Confidence 4444 899877888888889999998887777777 66655432221 1111111111111 11111 1111 12
Q ss_pred HhhHHHHh----hccc--CCCceEEEEEEEEEcCCCeeE-eeeecCCcchhhhHHHHHHHHHHH-cCC---CCCcccCCc
Q 018848 235 QLFDPVVR----AFDG--IAGERVSMRVDLECTDGRNTV-GIFSHRRLSVSVGTAIAAFVLAVL-EGA---TQPGVWFPE 303 (349)
Q Consensus 235 ~~~~~l~~----~~~~--~~~~~~~~~v~v~g~~G~~~~-~~~~~~~~~~~Ta~~aa~~a~~ll-~G~---~~~GV~~pe 303 (349)
+..++... +++. .++-.+.++.+.+-..|.+.. ++-+...|. .|++..+..+..++ ... ...||++|.
T Consensus 281 ~lv~r~~~k~g~GPt~e~qarg~~~~~~~~~tatG~r~~ari~t~~~y~-stav~~a~~~l~~ald~~~~~~~gGv~TPA 359 (382)
T COG3268 281 GLVLRVVPKPGTGPTEEAQARGRYTIEGETTTATGERYTARITTDNDYY-STAVLLAQAALALALDRDKLSEPGGVLTPA 359 (382)
T ss_pred hhhheeccCCCCCCCHHHHhcCcceEEEEEEeccCCceeeEEecccchH-HHHHHHHHHHHHHHhcCCcccCCCcccChH
Confidence 22222221 2221 112334444544444565553 333334444 45555555454444 444 489999999
Q ss_pred CCCCcchhhHHHHHHHhcccchhhh
Q 018848 304 EPEGIAIEAREVLLKRASQGTINFV 328 (349)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~g~~~~~ 328 (349)
.+-| +.|++.+..-+++|-
T Consensus 360 ~~lG------~dlv~rLp~aGv~~~ 378 (382)
T COG3268 360 AALG------ADLVERLPGAGVTFG 378 (382)
T ss_pred HHHh------HHHHHhcccccceee
Confidence 9854 334555555555553
No 5
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=99.87 E-value=1.1e-21 Score=181.28 Aligned_cols=96 Identities=19% Similarity=0.274 Sum_probs=91.5
Q ss_pred ceEEEeCCCHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHH-HHHHHHHHcCCcEEec
Q 018848 10 EFAEVNIYNEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAK-SFKDRAIAANIPAITT 88 (349)
Q Consensus 10 ~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~-~l~~~a~~~g~~~v~~ 88 (349)
..+.+|.+|+++|.++++++.+||||+|||..+++ +|++||+++|+|||||+||+.|.+++. .+|++|+++|+-+|.+
T Consensus 65 ~i~i~D~~n~~Sl~emak~~~vivN~vGPyR~hGE-~VVkacienG~~~vDISGEP~f~E~mq~kYhd~A~ekGVYIVsa 143 (423)
T KOG2733|consen 65 VILIADSANEASLDEMAKQARVIVNCVGPYRFHGE-PVVKACIENGTHHVDISGEPQFMERMQLKYHDLAKEKGVYIVSA 143 (423)
T ss_pred eEEEecCCCHHHHHHHHhhhEEEEeccccceecCc-HHHHHHHHcCCceeccCCCHHHHHHHHHHHHHHHHhcCeEEEee
Confidence 38999999999999999999999999999999997 999999999999999999999999994 8999999999999999
Q ss_pred CCcCcchhHHHHHHHHHH
Q 018848 89 GGIYPGVSNVMAAELVRV 106 (349)
Q Consensus 89 ~G~~PGls~lla~~~~~~ 106 (349)
|||+.=+.|+-+..+.+.
T Consensus 144 CGfDSIPaDlGv~f~~k~ 161 (423)
T KOG2733|consen 144 CGFDSIPADLGVMFLRKN 161 (423)
T ss_pred cccCCCCccceeeeehhh
Confidence 999999999988888864
No 6
>KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism]
Probab=99.18 E-value=2.1e-11 Score=114.78 Aligned_cols=176 Identities=17% Similarity=0.239 Sum_probs=132.0
Q ss_pred CCCceEEEeCCCHH-HHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcE
Q 018848 7 KNSEFAEVNIYNEG-SLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPA 85 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~-~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~ 85 (349)
.+++.+.+|+.|++ .|++.++..|+||+-. ||..+ ..|+++||..+.|-+-.+.-. .++.+|+..++.+|+++
T Consensus 46 ~~~~av~ldv~~~~~~L~~~v~~~D~viSLl-P~t~h--~lVaK~~i~~~~~~vtsSyv~---pe~~~L~~~~v~AG~ti 119 (445)
T KOG0172|consen 46 INIKAVSLDVADEELALRKEVKPLDLVISLL-PYTFH--PLVAKGCIITKEDSVTSSYVD---PELEELEKAAVPAGSTI 119 (445)
T ss_pred CCccceEEEccchHHHHHhhhcccceeeeec-cchhh--HHHHHHHHHhhcccccccccC---HHHHhhhhhccCCCceE
Confidence 45899999999999 9999999999999876 87765 699999999999998887533 44567789999999999
Q ss_pred EecCCcCcchhHHHHHHHHHHHhcccCCCCcEEEEEEeecCCCCCc------hhhHHH----HHHHhCCcceeeeCCeEE
Q 018848 86 ITTGGIYPGVSNVMAAELVRVARNESKGEPERLRFSYYTAGTGGAG------PTILAT----SFLLLGEEVVAYNKGEEI 155 (349)
Q Consensus 86 v~~~G~~PGls~lla~~~~~~l~~~~~~~v~~i~i~~~~~g~~~~~------~~~~~~----~l~~~~~p~~~~~~G~~~ 155 (349)
+-..|.+|||.+|++.......+ +....+++.. +|| ||.+... .+.|+| .+....+++.+|.||+..
T Consensus 120 ~~e~gldpGidhm~a~~ti~~vh-~hgg~i~sf~-syc-Gglpape~s~nplgykfsws~~gvl~a~rnsAky~~~Gkiv 196 (445)
T KOG0172|consen 120 MNEIGLDPGIDHMPAMKTIDLVH-EHGGKIKSFK-SYC-GGLPAPERSNNPLGYKFSWSPLGVLLALRNSAKYYKNGKIV 196 (445)
T ss_pred ecccccCcchhhhhhhccchHHH-hhcceeeehh-hhc-CCccChhhCCCCcceeeccchhhhhhhccccchhccCCeEE
Confidence 99999999999999999887765 4455666664 465 6765321 235555 455677899999999999
Q ss_pred EecCC--Cc--ceeeEccCCceeeeEEeecCCcccchhhhcCCC
Q 018848 156 TLEPY--SG--MLSVDFGKGIGRKDVFLLNLPEVRSAREVLGVP 195 (349)
Q Consensus 156 ~v~~~--~~--~~~~~fp~~~G~~~~~~~~~~e~~tl~~~~~v~ 195 (349)
.+..- -+ .....+|.+ .+.+||+.|..-....++++
T Consensus 197 ~v~g~~~~~~~~~~~~~pg~----al~~yPNrdst~y~evy~I~ 236 (445)
T KOG0172|consen 197 EVDGGDLADTATHYDFYPGP----ALECYPNRDSTEYSEVYGIP 236 (445)
T ss_pred EeccccHHhhccCcccCccc----cccccCCcchhhHHHHhcch
Confidence 98743 11 122223432 34466777766666666665
No 7
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.65 E-value=0.00021 Score=67.75 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=55.9
Q ss_pred HHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChh-HHHHHHHHHHHHHHcCCcEEecCCcCcchhHHH
Q 018848 22 LLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTI-YSQRAKSFKDRAIAANIPAITTGGIYPGVSNVM 99 (349)
Q Consensus 22 l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~-~~~~~~~l~~~a~~~g~~~v~~~G~~PGls~ll 99 (349)
..+++.++|+|+.|+++..+ .+.+..|+++|.|.||...-.. ..+....+++.|++.|...++++||+||+-.+.
T Consensus 54 ~~e~l~~iDVViIctPs~th---~~~~~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~~GwDPG~~si~ 129 (324)
T TIGR01921 54 DEKHLDDVDVLILCMGSATD---IPEQAPYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVISTGWDPGMFSIN 129 (324)
T ss_pred HHHhccCCCEEEEcCCCccC---HHHHHHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEECCCCcChHHHH
Confidence 33455789999999755444 6899999999999999964211 123335678888887888899999999985544
No 8
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.49 E-value=0.00086 Score=61.92 Aligned_cols=83 Identities=16% Similarity=0.131 Sum_probs=59.1
Q ss_pred HHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhH-HHHHHHHHHHHHHcCCcEEecCCcCcchhH
Q 018848 19 EGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIY-SQRAKSFKDRAIAANIPAITTGGIYPGVSN 97 (349)
Q Consensus 19 ~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~-~~~~~~l~~~a~~~g~~~v~~~G~~PGls~ 97 (349)
.+++.++++++|+||+|+.|... ..+++.|+++|+|.|--+ ..+ .++..++.+.+++.++.+.+++++-+++..
T Consensus 51 ~~dl~~ll~~~DvVid~t~p~~~---~~~~~~al~~G~~vvigt--tG~s~~~~~~l~~aa~~~~v~~s~n~s~g~~~~~ 125 (257)
T PRK00048 51 TDDLEAVLADADVLIDFTTPEAT---LENLEFALEHGKPLVIGT--TGFTEEQLAELEEAAKKIPVVIAPNFSIGVNLLM 125 (257)
T ss_pred cCCHHHhccCCCEEEECCCHHHH---HHHHHHHHHcCCCEEEEC--CCCCHHHHHHHHHHhcCCCEEEECcchHHHHHHH
Confidence 35677778899999999987665 589999999999999432 222 344556666455555555566666666677
Q ss_pred HHHHHHHHH
Q 018848 98 VMAAELVRV 106 (349)
Q Consensus 98 lla~~~~~~ 106 (349)
.+++.++..
T Consensus 126 ~l~~~aa~~ 134 (257)
T PRK00048 126 KLAEKAAKY 134 (257)
T ss_pred HHHHHHHHh
Confidence 778888854
No 9
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.03 E-value=0.0025 Score=59.13 Aligned_cols=86 Identities=24% Similarity=0.214 Sum_probs=64.0
Q ss_pred HHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCC----ChhHHHHHHHHHHHHHHcCCcEEecCCcCcchh
Q 018848 21 SLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCD----DTIYSQRAKSFKDRAIAANIPAITTGGIYPGVS 96 (349)
Q Consensus 21 ~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~----~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls 96 (349)
++.+++.++|+|+.|++|... ..++..|+++|+|.+.++- +.+.. .++.+.|+++|+.+.+.+|...|+.
T Consensus 54 ~~~ell~~~DvVvi~a~~~~~---~~~~~~al~~Gk~Vvv~s~gAl~d~~~~---~~L~~aA~~~g~~l~v~sga~~g~d 127 (265)
T PRK13304 54 SIDELVEDVDLVVECASVNAV---EEVVPKSLENGKDVIIMSVGALADKELF---LKLYKLAKENNCKIYLPSGAIVGLD 127 (265)
T ss_pred CHHHHhcCCCEEEEcCChHHH---HHHHHHHHHcCCCEEEEchHHhcCHHHH---HHHHHHHHHcCCEEEEeCchHHhHH
Confidence 345566899999999987555 5899999999999999764 33222 3667789999999999999988885
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEE
Q 018848 97 NVMAAELVRVARNESKGEPERLRFS 121 (349)
Q Consensus 97 ~lla~~~~~~l~~~~~~~v~~i~i~ 121 (349)
.+-.. .+++++++.+.
T Consensus 128 ~i~a~---------~~G~i~~V~~~ 143 (265)
T PRK13304 128 GIKAA---------SLGEIKSVTLT 143 (265)
T ss_pred HHHHH---------hcCCccEEEEE
Confidence 54211 25677888653
No 10
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=96.41 E-value=0.014 Score=52.93 Aligned_cols=85 Identities=21% Similarity=0.230 Sum_probs=62.2
Q ss_pred HHHHh-cCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCC----ChhHHHHHHHHHHHHHHcCCcEEecCCcCcchh
Q 018848 22 LLMAL-RDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCD----DTIYSQRAKSFKDRAIAANIPAITTGGIYPGVS 96 (349)
Q Consensus 22 l~~~~-~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~----~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls 96 (349)
+.+++ .++|+|+.|+++... ..++..|+++|+|.+=++- +. +...++-+.++++|..+.+..|+.-|+.
T Consensus 30 ~~eLl~~~vDaVviatp~~~H---~e~a~~aL~aGkhVl~~s~gAlad~---e~~~~l~~aA~~~g~~l~i~sGai~g~d 103 (229)
T TIGR03855 30 FDEFLPEDVDIVVEAASQEAV---KEYAEKILKNGKDLLIMSVGALADR---ELRERLREVARSSGRKVYIPSGAIGGLD 103 (229)
T ss_pred HHHHhcCCCCEEEECCChHHH---HHHHHHHHHCCCCEEEECCcccCCH---HHHHHHHHHHHhcCCEEEEChHHHHHHH
Confidence 44444 489999999987665 6999999999999998664 32 3334567788999999999988877774
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEE
Q 018848 97 NVMAAELVRVARNESKGEPERLRFS 121 (349)
Q Consensus 97 ~lla~~~~~~l~~~~~~~v~~i~i~ 121 (349)
.+-+ . ....++++.+.
T Consensus 104 ~l~a---~------~ig~~~~V~i~ 119 (229)
T TIGR03855 104 ALKA---A------SLGRIERVVLT 119 (229)
T ss_pred HHHh---c------ccCCceEEEEE
Confidence 4411 1 24567888763
No 11
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=96.13 E-value=0.012 Score=54.56 Aligned_cols=70 Identities=19% Similarity=0.161 Sum_probs=55.3
Q ss_pred HHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEec-CCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchhHH
Q 018848 24 MALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDV-CDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVSNV 98 (349)
Q Consensus 24 ~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi-~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls~l 98 (349)
++..++|+||+|+.|... ...++.|+++|+|.|-- ++.. .++..++.+.|+++|++++.+.-|+.|+.-+
T Consensus 64 ~l~~~~DvVIdfT~p~~~---~~~~~~al~~g~~vVigttg~~--~e~~~~l~~aA~~~g~~v~~a~NfSlGv~ll 134 (266)
T TIGR00036 64 AVETDPDVLIDFTTPEGV---LNHLKFALEHGVRLVVGTTGFS--EEDKQELADLAEKAGIAAVIAPNFSIGVNLM 134 (266)
T ss_pred HhcCCCCEEEECCChHHH---HHHHHHHHHCCCCEEEECCCCC--HHHHHHHHHHHhcCCccEEEECcccHHHHHH
Confidence 334579999999987665 68999999999999973 3322 2445577888899999999999999998544
No 12
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=95.84 E-value=0.014 Score=53.85 Aligned_cols=55 Identities=16% Similarity=0.224 Sum_probs=46.5
Q ss_pred CceEEEeCCCHHHHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCC
Q 018848 9 SEFAEVNIYNEGSLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCD 63 (349)
Q Consensus 9 ~~~~~~Dv~d~~~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~ 63 (349)
...+..+..|.+++.++++ +.|+||+++.||...-...++++|.+.|++|+..-.
T Consensus 44 ~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~eR 100 (256)
T TIGR00715 44 ALTVHTGALDPQELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRFER 100 (256)
T ss_pred CceEEECCCCHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEEEC
Confidence 3567889999999999998 589999999999743225899999999999999853
No 13
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=95.76 E-value=0.03 Score=52.09 Aligned_cols=86 Identities=17% Similarity=0.170 Sum_probs=62.0
Q ss_pred HHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchhHHHH
Q 018848 21 SLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVSNVMA 100 (349)
Q Consensus 21 ~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls~lla 100 (349)
++.+++.++|+|+.|+++... ..+...|+++|.|.+..+.. -..+..++.+.++++|..+.+.+|+.-|+. .+
T Consensus 60 ~~eell~~~D~Vvi~tp~~~h---~e~~~~aL~aGk~Vi~~s~g--al~~~~~L~~~A~~~g~~l~v~sGa~~g~d-~l- 132 (271)
T PRK13302 60 PLDQLATHADIVVEAAPASVL---RAIVEPVLAAGKKAIVLSVG--ALLRNEDLIDLARQNGGQIIVPTGALLGLD-AV- 132 (271)
T ss_pred CHHHHhcCCCEEEECCCcHHH---HHHHHHHHHcCCcEEEecch--hHHhHHHHHHHHHHcCCEEEEcchHHHhHH-HH-
Confidence 355567789999999975443 58899999999999987532 122345778889999999999888888873 11
Q ss_pred HHHHHHHhcccCCCCcEEEE
Q 018848 101 AELVRVARNESKGEPERLRF 120 (349)
Q Consensus 101 ~~~~~~l~~~~~~~v~~i~i 120 (349)
+. ....+++.+++
T Consensus 133 ----~~---g~iG~~~~v~~ 145 (271)
T PRK13302 133 ----TA---AAEGTIHSVKM 145 (271)
T ss_pred ----HH---HHcCCceEEEE
Confidence 11 12466777765
No 14
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=95.49 E-value=0.04 Score=51.07 Aligned_cols=81 Identities=16% Similarity=0.206 Sum_probs=57.7
Q ss_pred cCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHH-HHH-HHHHHHHHHcCCcEEecCCcCcchhHHHHHHHH
Q 018848 27 RDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYS-QRA-KSFKDRAIAANIPAITTGGIYPGVSNVMAAELV 104 (349)
Q Consensus 27 ~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~-~~~-~~l~~~a~~~g~~~v~~~G~~PGls~lla~~~~ 104 (349)
.++|+||.|++|... ...+..|+++|+|.+-.+..- +. .+. ..+.+.|++.|..+.+.+|+..|+.-+-...
T Consensus 60 ~~~DvVve~t~~~~~---~e~~~~aL~aGk~Vvi~s~~A-l~d~~~~~~L~~~A~~~g~~l~v~sga~gg~d~l~~~~-- 133 (265)
T PRK13303 60 QRPDLVVECAGHAAL---KEHVVPILKAGIDCAVISVGA-LADEALRERLEQAAEAGGARLHLLSGAIGGIDALAAAK-- 133 (265)
T ss_pred cCCCEEEECCCHHHH---HHHHHHHHHcCCCEEEeChHH-hcCHHHHHHHHHHHHHCCCEEEEeChHhhCHHHHHHHH--
Confidence 479999999987544 589999999999999865321 11 122 3567789999999999999998854333221
Q ss_pred HHHhcccCCCCcEEEE
Q 018848 105 RVARNESKGEPERLRF 120 (349)
Q Consensus 105 ~~l~~~~~~~v~~i~i 120 (349)
...++.+.+
T Consensus 134 -------~g~~~~v~~ 142 (265)
T PRK13303 134 -------EGGLDEVTY 142 (265)
T ss_pred -------hCCceEEEE
Confidence 245667765
No 15
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.16 E-value=0.024 Score=50.99 Aligned_cols=54 Identities=22% Similarity=0.265 Sum_probs=40.9
Q ss_pred CCceEEEeCCCHHHHHHHhcCCcEEEEccCCCC----CCCcHHHHHHHHHcCCCeEecC
Q 018848 8 NSEFAEVNIYNEGSLLMALRDVDLVVHAAGPFQ----QAPKCTVLEAAIETKTAYIDVC 62 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~~----~~~~~~v~~aci~~Gv~YvDi~ 62 (349)
.++.+++|..|+++|.++++++|.|+.+.++.. ... ..+++||.++|+.++=.+
T Consensus 44 g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~~~~-~~li~Aa~~agVk~~v~s 101 (233)
T PF05368_consen 44 GAEVVEADYDDPESLVAALKGVDAVFSVTPPSHPSELEQQ-KNLIDAAKAAGVKHFVPS 101 (233)
T ss_dssp TTEEEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHHHHH-HHHHHHHHHHT-SEEEES
T ss_pred cceEeecccCCHHHHHHHHcCCceEEeecCcchhhhhhhh-hhHHHhhhccccceEEEE
Confidence 478999999999999999999999999998542 123 478889999998877433
No 16
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=95.01 E-value=0.05 Score=50.84 Aligned_cols=31 Identities=39% Similarity=0.541 Sum_probs=28.3
Q ss_pred ceEEEeCCCHHHHHHHhcCCcEEEEccCCCC
Q 018848 10 EFAEVNIYNEGSLLMALRDVDLVVHAAGPFQ 40 (349)
Q Consensus 10 ~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~~ 40 (349)
++++.|+.|++++.++++++|+|++||.|..
T Consensus 48 ~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~ 78 (280)
T PF01073_consen 48 EYIQGDITDPESLEEALEGVDVVFHTAAPVP 78 (280)
T ss_pred eEEEeccccHHHHHHHhcCCceEEEeCcccc
Confidence 3899999999999999999999999997644
No 17
>CHL00194 ycf39 Ycf39; Provisional
Probab=94.79 E-value=0.24 Score=46.82 Aligned_cols=55 Identities=18% Similarity=0.202 Sum_probs=40.6
Q ss_pred CCceEEEeCCCHHHHHHHhcCCcEEEEccCCCCCCC----------cHHHHHHHHHcCC-CeEecC
Q 018848 8 NSEFAEVNIYNEGSLLMALRDVDLVVHAAGPFQQAP----------KCTVLEAAIETKT-AYIDVC 62 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~~~~~----------~~~v~~aci~~Gv-~YvDi~ 62 (349)
++++++.|+.|++++.++++++|+||||++...... ...++++|.++|+ ++|=++
T Consensus 44 ~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~S 109 (317)
T CHL00194 44 GAELVYGDLSLPETLPPSFKGVTAIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFS 109 (317)
T ss_pred CCEEEECCCCCHHHHHHHHCCCCEEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEec
Confidence 588999999999999999999999999986432100 0246777777776 455444
No 18
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=94.63 E-value=0.068 Score=45.90 Aligned_cols=34 Identities=32% Similarity=0.534 Sum_probs=31.3
Q ss_pred CCCceEEEeCCCHHHHHHHhcCCcEEEEccCCCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALRDVDLVVHAAGPFQ 40 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~~ 40 (349)
.++++++.|+.|++++.+.++++|+||+|+||..
T Consensus 39 ~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~ 72 (183)
T PF13460_consen 39 PGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPP 72 (183)
T ss_dssp TTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTT
T ss_pred cccccceeeehhhhhhhhhhhhcchhhhhhhhhc
Confidence 5789999999999999999999999999998644
No 19
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=94.09 E-value=0.09 Score=42.13 Aligned_cols=61 Identities=15% Similarity=0.187 Sum_probs=41.5
Q ss_pred HHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHH--HHHHHHHHHHHHcCCcEE
Q 018848 22 LLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYS--QRAKSFKDRAIAANIPAI 86 (349)
Q Consensus 22 l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~--~~~~~l~~~a~~~g~~~v 86 (349)
+.+++. +.|+||.|+++-. . ...+..+++.|+|.|-.+-.. +. ....++.+.|+++|+.+.
T Consensus 51 ~~~~~~~~~~dvvVE~t~~~~--~-~~~~~~~L~~G~~VVt~nk~a-la~~~~~~~L~~~A~~~g~~~~ 115 (117)
T PF03447_consen 51 LEELIDDPDIDVVVECTSSEA--V-AEYYEKALERGKHVVTANKGA-LADEALYEELREAARKNGVRIY 115 (117)
T ss_dssp HHHHHTHTT-SEEEE-SSCHH--H-HHHHHHHHHTTCEEEES-HHH-HHSHHHHHHHHHHHHHHT-EEE
T ss_pred HHHHhcCcCCCEEEECCCchH--H-HHHHHHHHHCCCeEEEECHHH-hhhHHHHHHHHHHHHHcCCEEE
Confidence 455666 8999999976422 3 588899999999999987432 33 334577888999988764
No 20
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=94.07 E-value=0.055 Score=45.35 Aligned_cols=72 Identities=11% Similarity=0.157 Sum_probs=48.2
Q ss_pred HHhcCCcEEEEccCCCCC-CCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchhHHHHHH
Q 018848 24 MALRDVDLVVHAAGPFQQ-APKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVSNVMAAE 102 (349)
Q Consensus 24 ~~~~~~dvVIn~agP~~~-~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls~lla~~ 102 (349)
+.++++|+||+|+++... ..+..+...+++.|...+|++...... .+.+++++.|..+ -+|+ +++...
T Consensus 77 ~~~~~~Dvvi~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~~~~~----~l~~~~~~~g~~~------v~g~-~~~~~q 145 (155)
T cd01065 77 ELLAEADLIINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNPLET----PLLKEARALGAKT------IDGL-EMLVYQ 145 (155)
T ss_pred hccccCCEEEeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcCCCCC----HHHHHHHHCCCce------eCCH-HHHHHH
Confidence 447899999999976553 111245567889999999998654321 5567788888764 4554 456655
Q ss_pred HHHH
Q 018848 103 LVRV 106 (349)
Q Consensus 103 ~~~~ 106 (349)
.+.+
T Consensus 146 ~~~~ 149 (155)
T cd01065 146 AAEA 149 (155)
T ss_pred HHHH
Confidence 5543
No 21
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=93.82 E-value=0.078 Score=49.37 Aligned_cols=52 Identities=23% Similarity=0.385 Sum_probs=40.5
Q ss_pred EEeCCCHHHHHHHhc--CCcEEEEccCCCCCCC----------------cHHHHHHHHHcCCCeEecCCCh
Q 018848 13 EVNIYNEGSLLMALR--DVDLVVHAAGPFQQAP----------------KCTVLEAAIETKTAYIDVCDDT 65 (349)
Q Consensus 13 ~~Dv~d~~~l~~~~~--~~dvVIn~agP~~~~~----------------~~~v~~aci~~Gv~YvDi~~~~ 65 (349)
.+|+.|++.+.++++ +.|+|||||. |.... ...++++|-+.|+.+|-+|-|.
T Consensus 33 ~~Ditd~~~v~~~i~~~~PDvVIn~AA-yt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDy 102 (281)
T COG1091 33 ELDITDPDAVLEVIRETRPDVVINAAA-YTAVDKAESEPELAFAVNATGAENLARAAAEVGARLVHISTDY 102 (281)
T ss_pred cccccChHHHHHHHHhhCCCEEEECcc-ccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeecce
Confidence 479999999999999 5699999994 53321 1267888888888888888554
No 22
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=93.78 E-value=0.21 Score=46.04 Aligned_cols=76 Identities=21% Similarity=0.153 Sum_probs=59.2
Q ss_pred HHHHH-hcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCC----ChhHHHHHHHHHHHHHHcCCcEEecCCcCcch
Q 018848 21 SLLMA-LRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCD----DTIYSQRAKSFKDRAIAANIPAITTGGIYPGV 95 (349)
Q Consensus 21 ~l~~~-~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~----~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGl 95 (349)
++.++ ..+.|+||.||+|-.. ......++++|+|++=+|- |..+.+ ++.+.|++.|..+.+-+|.--|+
T Consensus 54 ~l~~ll~~~~DlVVE~A~~~av---~e~~~~iL~~g~dlvv~SvGALaD~~~~~---~l~~~A~~~g~~i~ipSGAigGl 127 (267)
T PRK13301 54 GLPGLLAWRPDLVVEAAGQQAI---AEHAEGCLTAGLDMIICSAGALADDALRA---RLIAAAEAGGARIRVPAGAIAGL 127 (267)
T ss_pred CHHHHhhcCCCEEEECCCHHHH---HHHHHHHHhcCCCEEEEChhHhcCHHHHH---HHHHHHHhCCCEEEEeChHHHhH
Confidence 35565 4689999999997554 4788999999999999882 333333 45677889999999999999999
Q ss_pred hHHHHHH
Q 018848 96 SNVMAAE 102 (349)
Q Consensus 96 s~lla~~ 102 (349)
..+-+..
T Consensus 128 D~l~aa~ 134 (267)
T PRK13301 128 DYLQAVA 134 (267)
T ss_pred HHHHHhh
Confidence 8776643
No 23
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=93.64 E-value=0.51 Score=44.85 Aligned_cols=91 Identities=21% Similarity=0.175 Sum_probs=59.2
Q ss_pred HHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEe---cCCChhHHHHHHHHHHHHHHcCCcEEecCC--cCc
Q 018848 21 SLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYID---VCDDTIYSQRAKSFKDRAIAANIPAITTGG--IYP 93 (349)
Q Consensus 21 ~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvD---i~~~~~~~~~~~~l~~~a~~~g~~~v~~~G--~~P 93 (349)
++.++++ +.|+|+.|+.+..+ ..++.+|+++|+|.+- ++. -.++..++-+.|+++|+.+..+.- ++|
T Consensus 58 ~~~~ll~~~~iD~V~Iatp~~~H---~e~~~~AL~aGkhVl~EKPla~---t~~ea~~l~~~a~~~~~~l~v~~~~Rf~p 131 (342)
T COG0673 58 DLEELLADPDIDAVYIATPNALH---AELALAALEAGKHVLCEKPLAL---TLEEAEELVELARKAGVKLMVGFNRRFDP 131 (342)
T ss_pred CHHHHhcCCCCCEEEEcCCChhh---HHHHHHHHhcCCEEEEcCCCCC---CHHHHHHHHHHHHHcCCceeeehhhhcCH
Confidence 4667777 37999999976665 6899999999999864 222 145556778888888865444332 233
Q ss_pred chhHHHHHHHHHHHhcccCCCCcEEEEEE
Q 018848 94 GVSNVMAAELVRVARNESKGEPERLRFSY 122 (349)
Q Consensus 94 Gls~lla~~~~~~l~~~~~~~v~~i~i~~ 122 (349)
.. .-++.+.+. ..+.++..++..+
T Consensus 132 ~~--~~~k~li~~---g~lG~v~~~~~~~ 155 (342)
T COG0673 132 AV--QALKELIDS---GALGEVVSVQASF 155 (342)
T ss_pred HH--HHHHHHHhc---CCcCceEEEEEEe
Confidence 32 334444432 3466777777654
No 24
>COG5310 Homospermidine synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.49 E-value=0.38 Score=45.43 Aligned_cols=80 Identities=15% Similarity=0.281 Sum_probs=53.5
Q ss_pred HHHHHhcC---CcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCCh---hH--------------HHHHHHHHHHHHH
Q 018848 21 SLLMALRD---VDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDT---IY--------------SQRAKSFKDRAIA 80 (349)
Q Consensus 21 ~l~~~~~~---~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~---~~--------------~~~~~~l~~~a~~ 80 (349)
-|..++++ --.+||-. .+++...+++-|-++|+-|||+.-|+ .| .++. -+.+..++
T Consensus 76 vL~pll~~~~gqgf~vnLS---vd~~s~Dlmr~crk~~vLYidTvVEpW~gfyfDa~adn~artnyaLRet-~lrEk~r~ 151 (481)
T COG5310 76 VLKPLLKGVGGQGFCVNLS---VDTSSLDLMRLCRKHGVLYIDTVVEPWLGFYFDAQADNAARTNYALRET-VLREKRRN 151 (481)
T ss_pred HHHHHhhcCCCceEEEEeE---eccchhHHHHHHHHcCeEEEeeeeccccccchhhhhhhhhhhhHHHHHH-HHHHhccC
Confidence 34555554 56777765 23333689999999999999998653 11 1111 22233332
Q ss_pred -cCCcEEecCCcCcchhHHHHHHHH
Q 018848 81 -ANIPAITTGGIYPGVSNVMAAELV 104 (349)
Q Consensus 81 -~g~~~v~~~G~~PGls~lla~~~~ 104 (349)
-|-++|..||.+||+...+++.+.
T Consensus 152 pgg~TaVs~cGANPGmvswFVKqaL 176 (481)
T COG5310 152 PGGPTAVSTCGANPGMVSWFVKQAL 176 (481)
T ss_pred CCCCeeeeecCCCchHHHHHHHHHH
Confidence 568899999999999999887643
No 25
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=93.47 E-value=0.16 Score=40.47 Aligned_cols=64 Identities=19% Similarity=0.195 Sum_probs=45.4
Q ss_pred HHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEec
Q 018848 22 LLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITT 88 (349)
Q Consensus 22 l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~ 88 (349)
+.++++ +.|+|+.|+.+... ..++..|+++|.|.+-=----.-.++..++-+.++++|+.+..+
T Consensus 54 ~~~ll~~~~~D~V~I~tp~~~h---~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~~Vg 119 (120)
T PF01408_consen 54 LEELLADEDVDAVIIATPPSSH---AEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKVMVG 119 (120)
T ss_dssp HHHHHHHTTESEEEEESSGGGH---HHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCEEEE
T ss_pred HHHHHHhhcCCEEEEecCCcch---HHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEEEEe
Confidence 456666 89999999976555 69999999999976531100012456667788899999886654
No 26
>PRK11579 putative oxidoreductase; Provisional
Probab=93.40 E-value=0.54 Score=45.16 Aligned_cols=90 Identities=14% Similarity=0.070 Sum_probs=59.7
Q ss_pred HHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChh---HHHHHHHHHHHHHHcCCcEEecC--CcCc
Q 018848 21 SLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTI---YSQRAKSFKDRAIAANIPAITTG--GIYP 93 (349)
Q Consensus 21 ~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~---~~~~~~~l~~~a~~~g~~~v~~~--G~~P 93 (349)
+++++++ +.|+|+.|+.+... ..++..|+++|+|.+- |-| -.++..++.+.|+++|+.+..+. =++|
T Consensus 55 ~~~ell~~~~vD~V~I~tp~~~H---~~~~~~al~aGkhVl~---EKPla~t~~ea~~l~~~a~~~g~~l~v~~~~R~~p 128 (346)
T PRK11579 55 EPQHLFNDPNIDLIVIPTPNDTH---FPLAKAALEAGKHVVV---DKPFTVTLSQARELDALAKSAGRVLSVFHNRRWDS 128 (346)
T ss_pred CHHHHhcCCCCCEEEEcCCcHHH---HHHHHHHHHCCCeEEE---eCCCCCCHHHHHHHHHHHHHhCCEEEEEeeccCCH
Confidence 4566775 68999999976655 6999999999999883 222 24555677888899997654433 3456
Q ss_pred chhHHHHHHHHHHHhcccCCCCcEEEEE
Q 018848 94 GVSNVMAAELVRVARNESKGEPERLRFS 121 (349)
Q Consensus 94 Gls~lla~~~~~~l~~~~~~~v~~i~i~ 121 (349)
.. .-++.+++. ..+.++..++..
T Consensus 129 ~~--~~~k~~i~~---g~iG~i~~~~~~ 151 (346)
T PRK11579 129 DF--LTLKALLAE---GVLGEVAYFESH 151 (346)
T ss_pred HH--HHHHHHHhc---CCCCCeEEEEEE
Confidence 54 333444432 346667666654
No 27
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=93.39 E-value=0.29 Score=43.89 Aligned_cols=85 Identities=20% Similarity=0.223 Sum_probs=64.1
Q ss_pred HHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCC----ChhHHHHHHHHHHHHHHcCCcEEecCCcCcchh
Q 018848 21 SLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCD----DTIYSQRAKSFKDRAIAANIPAITTGGIYPGVS 96 (349)
Q Consensus 21 ~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~----~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls 96 (349)
.+.+++++.|+||.||+|-.- ...+.-++++|+|++=+|- |..+.+ .+.+.|+..|..+-.-+|.-.||.
T Consensus 53 ~ide~~~~~DlvVEaAS~~Av---~e~~~~~L~~g~d~iV~SVGALad~~l~e---rl~~lak~~~~rv~~pSGAiGGlD 126 (255)
T COG1712 53 DIDELIAEVDLVVEAASPEAV---REYVPKILKAGIDVIVMSVGALADEGLRE---RLRELAKCGGARVYLPSGAIGGLD 126 (255)
T ss_pred cHHHHhhccceeeeeCCHHHH---HHHhHHHHhcCCCEEEEechhccChHHHH---HHHHHHhcCCcEEEecCccchhHH
Confidence 366777899999999985333 4778889999999998873 333333 356668899999999999999996
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEE
Q 018848 97 NVMAAELVRVARNESKGEPERLRF 120 (349)
Q Consensus 97 ~lla~~~~~~l~~~~~~~v~~i~i 120 (349)
.+.+.. .+.++++.+
T Consensus 127 ~l~aar---------~g~i~~V~l 141 (255)
T COG1712 127 ALAAAR---------VGGIEEVVL 141 (255)
T ss_pred HHHHhh---------cCCeeEEEE
Confidence 655443 456888865
No 28
>PRK06349 homoserine dehydrogenase; Provisional
Probab=93.32 E-value=0.48 Score=47.03 Aligned_cols=91 Identities=12% Similarity=0.119 Sum_probs=61.1
Q ss_pred HHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchhHHH
Q 018848 22 LLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVSNVM 99 (349)
Q Consensus 22 l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls~ll 99 (349)
+.+++. +.|+||.|+|+.. .. ...++.|+++|.|.|-.+- ........++.+.|+++|+.+...+....|+.-+-
T Consensus 64 ~~~ll~d~~iDvVve~tg~~~-~~-~~~~~~aL~~GkhVVtaNK-~~~a~~~~eL~~lA~~~gv~l~fEasV~ggiPii~ 140 (426)
T PRK06349 64 PEELVNDPDIDIVVELMGGIE-PA-RELILKALEAGKHVVTANK-ALLAVHGAELFAAAEEKGVDLYFEAAVAGGIPIIK 140 (426)
T ss_pred HHHHhhCCCCCEEEECCCCch-HH-HHHHHHHHHCCCeEEEcCH-HHHHHHHHHHHHHHHHcCCcEEEEEEeeccCchHH
Confidence 456665 6899999997643 23 5899999999999997654 22334446788889999999888766665554332
Q ss_pred HHHHHHHHhcccCCCCcEEEE
Q 018848 100 AAELVRVARNESKGEPERLRF 120 (349)
Q Consensus 100 a~~~~~~l~~~~~~~v~~i~i 120 (349)
...-. + ..+++.+|.-
T Consensus 141 ~l~~~--l---~~~~I~~I~G 156 (426)
T PRK06349 141 ALREG--L---AANRITRVMG 156 (426)
T ss_pred HHHhh--c---ccCCeeEEEE
Confidence 22111 1 1467777764
No 29
>PLN02214 cinnamoyl-CoA reductase
Probab=93.16 E-value=0.17 Score=48.52 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=30.0
Q ss_pred CCceEEEeCCCHHHHHHHhcCCcEEEEccCCCC
Q 018848 8 NSEFAEVNIYNEGSLLMALRDVDLVVHAAGPFQ 40 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~~ 40 (349)
++++++.|+.|.+++.++++++|+||||++|+.
T Consensus 61 ~~~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~~~ 93 (342)
T PLN02214 61 RLILCKADLQDYEALKAAIDGCDGVFHTASPVT 93 (342)
T ss_pred cEEEEecCcCChHHHHHHHhcCCEEEEecCCCC
Confidence 577889999999999999999999999999764
No 30
>PRK10206 putative oxidoreductase; Provisional
Probab=92.95 E-value=0.65 Score=44.71 Aligned_cols=90 Identities=17% Similarity=0.125 Sum_probs=59.8
Q ss_pred HHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhH---HHHHHHHHHHHHHcCCcEEecCC--cCc
Q 018848 21 SLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIY---SQRAKSFKDRAIAANIPAITTGG--IYP 93 (349)
Q Consensus 21 ~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~---~~~~~~l~~~a~~~g~~~v~~~G--~~P 93 (349)
++.++++ +.|+|+.|+.+..+ ..++..|+++|+|.+- |-|+ .++..++-+.++++|+.+..+.- +.|
T Consensus 55 ~~~ell~~~~iD~V~I~tp~~~H---~~~~~~al~aGkhVl~---EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R~~p 128 (344)
T PRK10206 55 DLDEVLNDPDVKLVVVCTHADSH---FEYAKRALEAGKNVLV---EKPFTPTLAEAKELFALAKSKGLTVTPYQNRRFDS 128 (344)
T ss_pred CHHHHhcCCCCCEEEEeCCchHH---HHHHHHHHHcCCcEEE---ecCCcCCHHHHHHHHHHHHHhCCEEEEEEeeeECH
Confidence 4667775 78999999966555 6999999999999874 2222 45566777888999987655432 344
Q ss_pred chhHHHHHHHHHHHhcccCCCCcEEEEE
Q 018848 94 GVSNVMAAELVRVARNESKGEPERLRFS 121 (349)
Q Consensus 94 Gls~lla~~~~~~l~~~~~~~v~~i~i~ 121 (349)
.. ..++.+++. ..+.++..++..
T Consensus 129 ~~--~~~k~li~~---g~iG~i~~i~~~ 151 (344)
T PRK10206 129 CF--LTAKKAIES---GKLGEIVEVESH 151 (344)
T ss_pred HH--HHHHHHHHc---CCCCCeEEEEEE
Confidence 33 444555532 345667666654
No 31
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=92.29 E-value=0.33 Score=47.51 Aligned_cols=33 Identities=24% Similarity=0.199 Sum_probs=29.2
Q ss_pred CCCceEEEeCCCHHHHHHHhc----CCcEEEEccCCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALR----DVDLVVHAAGPF 39 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~----~~dvVIn~agP~ 39 (349)
+++++++.|+.|++++.++++ ++|+||||+++.
T Consensus 111 ~~v~~v~~Dl~d~~~l~~~~~~~~~~~D~Vi~~aa~~ 147 (390)
T PLN02657 111 PGAEVVFGDVTDADSLRKVLFSEGDPVDVVVSCLASR 147 (390)
T ss_pred CCceEEEeeCCCHHHHHHHHHHhCCCCcEEEECCccC
Confidence 468899999999999999998 599999999853
No 32
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=91.70 E-value=0.24 Score=45.21 Aligned_cols=83 Identities=19% Similarity=0.165 Sum_probs=60.8
Q ss_pred ceEEEeCCCHHHHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCC--------hhHHHHHHHHHHHHH
Q 018848 10 EFAEVNIYNEGSLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDD--------TIYSQRAKSFKDRAI 79 (349)
Q Consensus 10 ~~~~~Dv~d~~~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~--------~~~~~~~~~l~~~a~ 79 (349)
..+..=..+.+.|+++++ +.|+||++.-||.-.-..+.+++|-+.|++|+=.-.. .-.+..+.+..+.++
T Consensus 46 ~~~~~G~l~~e~l~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~eRP~~~~~gd~~~~V~d~~ea~~~~~ 125 (257)
T COG2099 46 PVRVGGFLGAEGLAAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRLERPPWAPNGDNWIEVADIEEAAEAAK 125 (257)
T ss_pred CeeecCcCCHHHHHHHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEECCccccCCCceEEecCHHHHHHHHh
Confidence 455666678899999998 8999999999996322248999999999999965432 112445555566667
Q ss_pred HcCCcEEecCCcC
Q 018848 80 AANIPAITTGGIY 92 (349)
Q Consensus 80 ~~g~~~v~~~G~~ 92 (349)
+.+..++...|..
T Consensus 126 ~~~~rVflt~G~~ 138 (257)
T COG2099 126 QLGRRVFLTTGRQ 138 (257)
T ss_pred ccCCcEEEecCcc
Confidence 7777778777754
No 33
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=91.32 E-value=1.1 Score=41.60 Aligned_cols=100 Identities=15% Similarity=0.111 Sum_probs=63.4
Q ss_pred ceEEEeCCCHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhH-----HHHHHHHHHHHHHcCCc
Q 018848 10 EFAEVNIYNEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIY-----SQRAKSFKDRAIAANIP 84 (349)
Q Consensus 10 ~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~-----~~~~~~l~~~a~~~g~~ 84 (349)
+..+.+-++.++.-+++ ..+++.|..-|. ..-.+.|+++|++.|..+....| .+.....++.|+++|..
T Consensus 52 dlgV~a~~~~~avlAtl-~~~~~y~~~~~~-----~~~y~rlL~aGiNVv~~g~~l~yPw~~~PelaeKpl~lAaraGn~ 125 (350)
T COG3804 52 DLGVIATNSIDAVLATL-ADAVIYAPLLPS-----VDEYARLLRAGINVVTPGPVLQYPWFYPPELAEKPLELAARAGNA 125 (350)
T ss_pred CceeEeecccccceecc-ccceeeecccch-----HHHHHHHHHcCCceeccCccccCCCcCChHHhhchHHHHHhcCCc
Confidence 34444444444444444 234555555552 24568999999999998654322 23344566778899998
Q ss_pred EEecCCcCcchhHHH-HHHHHHHHhcccCCCCcEEEE
Q 018848 85 AITTGGIYPGVSNVM-AAELVRVARNESKGEPERLRF 120 (349)
Q Consensus 85 ~v~~~G~~PGls~ll-a~~~~~~l~~~~~~~v~~i~i 120 (349)
-+.+.|..||.++-+ ...++ -...++++|+.
T Consensus 126 Tl~gtGI~pGF~~dllpmlLs-----gpcteve~ir~ 157 (350)
T COG3804 126 TLHGTGIGPGFVTDLLPMLLS-----GPCTEVEFIRS 157 (350)
T ss_pred eEEecccCccHHHHHHHHHHc-----ccccceEEEee
Confidence 899999999987554 44444 24556666654
No 34
>PRK06270 homoserine dehydrogenase; Provisional
Probab=91.22 E-value=1.4 Score=42.31 Aligned_cols=92 Identities=16% Similarity=0.112 Sum_probs=59.1
Q ss_pred HHHHHhc--CCcEEEEccCCCCCC---CcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcch
Q 018848 21 SLLMALR--DVDLVVHAAGPFQQA---PKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGV 95 (349)
Q Consensus 21 ~l~~~~~--~~dvVIn~agP~~~~---~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGl 95 (349)
++.++++ ++|+||.|+++.... + ...++.|+++|+|.|-.+- .+......++.+.|+++|+.+...+-..-|+
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a-~~~~~~aL~~GkhVVtaNK-~pla~~~~eL~~~A~~~g~~~~~ea~v~~gl 157 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPA-LSHCRKALERGKHVVTSNK-GPLALAYKELKELAKKNGVRFRYEATVGGAM 157 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchH-HHHHHHHHHCCCEEEcCCc-HHHHhhHHHHHHHHHHcCCEEEEeeeeeech
Confidence 3455553 789999999765432 2 3688999999999998653 2333344578888999999888766444444
Q ss_pred hHHHHH-HHHHHHhcccCCCCcEEEE
Q 018848 96 SNVMAA-ELVRVARNESKGEPERLRF 120 (349)
Q Consensus 96 s~lla~-~~~~~l~~~~~~~v~~i~i 120 (349)
.-+-.. ... ..+++.+|+-
T Consensus 158 Pii~~l~~~l------~g~~I~~I~G 177 (341)
T PRK06270 158 PIINLAKETL------AGNDIKSIKG 177 (341)
T ss_pred hHHHHHHhhc------ccCceEEEEE
Confidence 322221 122 1366777764
No 35
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=91.17 E-value=0.44 Score=48.87 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=29.3
Q ss_pred CCceEEEeCCCHHHHHHHhcCCcEEEEccCCC
Q 018848 8 NSEFAEVNIYNEGSLLMALRDVDLVVHAAGPF 39 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~ 39 (349)
+++++++|+.|.+++.+.+.++|+||||+|..
T Consensus 139 ~v~iV~gDLtD~esI~~aLggiDiVVn~AG~~ 170 (576)
T PLN03209 139 KLEIVECDLEKPDQIGPALGNASVVICCIGAS 170 (576)
T ss_pred ceEEEEecCCCHHHHHHHhcCCCEEEEccccc
Confidence 57899999999999999999999999999854
No 36
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=90.89 E-value=0.51 Score=39.13 Aligned_cols=58 Identities=24% Similarity=0.139 Sum_probs=40.7
Q ss_pred cCCCCceEEEeCC-CHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCC
Q 018848 5 LGKNSEFAEVNIY-NEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDD 64 (349)
Q Consensus 5 l~~~~~~~~~Dv~-d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~ 64 (349)
+.+.++....+.. +.....++++++|+||+|...+.. . ..+.+.|.+.|++|++.+..
T Consensus 65 ~~p~v~i~~~~~~~~~~~~~~~~~~~diVi~~~d~~~~-~-~~l~~~~~~~~i~~i~~~~~ 123 (143)
T cd01483 65 LNPGVNVTAVPEGISEDNLDDFLDGVDLVIDAIDNIAV-R-RALNRACKELGIPVIDAGGL 123 (143)
T ss_pred HCCCcEEEEEeeecChhhHHHHhcCCCEEEECCCCHHH-H-HHHHHHHHHcCCCEEEEcCC
Confidence 3444444444332 223347888999999999976443 2 57899999999999998764
No 37
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=90.66 E-value=0.46 Score=44.19 Aligned_cols=33 Identities=21% Similarity=0.204 Sum_probs=29.2
Q ss_pred CCceEEEeCCCHHHHHHHhcC--CcEEEEccCCCC
Q 018848 8 NSEFAEVNIYNEGSLLMALRD--VDLVVHAAGPFQ 40 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~~--~dvVIn~agP~~ 40 (349)
+++++.+|+.|++++.+++++ +|+||||+++..
T Consensus 51 ~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~~~ 85 (317)
T TIGR01181 51 RYRFVKGDIGDRELVSRLFTEHQPDAVVHFAAESH 85 (317)
T ss_pred CcEEEEcCCcCHHHHHHHHhhcCCCEEEEcccccC
Confidence 577889999999999999997 899999998643
No 38
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=90.24 E-value=0.47 Score=45.12 Aligned_cols=49 Identities=31% Similarity=0.389 Sum_probs=40.6
Q ss_pred CCCceEEEeCCCHHHHHHHhcCCcEEEEccCCCCCCCc--------------HHHHHHHHHcC
Q 018848 7 KNSEFAEVNIYNEGSLLMALRDVDLVVHAAGPFQQAPK--------------CTVLEAAIETK 55 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~~~~~~--------------~~v~~aci~~G 55 (349)
++.+..+.|+.|.+++.+.+++||.|+++|-|+.-... ..|+++|.++.
T Consensus 57 ~~l~l~~aDL~d~~sf~~ai~gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~ 119 (327)
T KOG1502|consen 57 ERLKLFKADLLDEGSFDKAIDGCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK 119 (327)
T ss_pred ccceEEeccccccchHHHHHhCCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC
Confidence 46899999999999999999999999999988754221 24777888777
No 39
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=89.92 E-value=0.34 Score=39.38 Aligned_cols=62 Identities=18% Similarity=0.243 Sum_probs=40.5
Q ss_pred HHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEe-cCCChhHHHHHHHHHHHHHHcCCcEEec
Q 018848 20 GSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYID-VCDDTIYSQRAKSFKDRAIAANIPAITT 88 (349)
Q Consensus 20 ~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvD-i~~~~~~~~~~~~l~~~a~~~g~~~v~~ 88 (349)
+++.++++.+|+||+...|... ...++.|+++|++.|= +||.. .+++..+.+.+++ ++++.+
T Consensus 59 ~~l~~~~~~~DVvIDfT~p~~~---~~~~~~~~~~g~~~ViGTTG~~--~~~~~~l~~~a~~--~~vl~a 121 (124)
T PF01113_consen 59 DDLEELLEEADVVIDFTNPDAV---YDNLEYALKHGVPLVIGTTGFS--DEQIDELEELAKK--IPVLIA 121 (124)
T ss_dssp S-HHHHTTH-SEEEEES-HHHH---HHHHHHHHHHT-EEEEE-SSSH--HHHHHHHHHHTTT--SEEEE-
T ss_pred hhHHHhcccCCEEEEcCChHHh---HHHHHHHHhCCCCEEEECCCCC--HHHHHHHHHHhcc--CCEEEe
Confidence 5678888889999999988665 5899999999999998 55643 2334455555544 555544
No 40
>PRK08374 homoserine dehydrogenase; Provisional
Probab=89.87 E-value=0.86 Score=43.77 Aligned_cols=89 Identities=12% Similarity=0.074 Sum_probs=60.8
Q ss_pred HHHHh--cCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchhHHH
Q 018848 22 LLMAL--RDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVSNVM 99 (349)
Q Consensus 22 l~~~~--~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls~ll 99 (349)
+.+++ .++|+||+|+++-. . ..+...|++.|+|.|-.+-. .......++.+.|+++|+.++..++..-|+.=+=
T Consensus 83 ~~ell~~~~~DVvVd~t~~~~--a-~~~~~~al~~G~~VVtanK~-~la~~~~el~~la~~~~~~~~~ea~v~~GiPii~ 158 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDKN--A-HEWHLEALKEGKSVVTSNKP-PIAFHYDELLDLANERNLPYLFEATVMAGTPIIG 158 (336)
T ss_pred HHHHHhcCCCCEEEECCCcHH--H-HHHHHHHHhhCCcEEECCHH-HHHhCHHHHHHHHHHcCCeEEEeccccccCCchH
Confidence 44555 38999999997532 3 58999999999999976632 1222334667778899999999888887775332
Q ss_pred HHH-HHHHHhcccCCCCcEEEE
Q 018848 100 AAE-LVRVARNESKGEPERLRF 120 (349)
Q Consensus 100 a~~-~~~~l~~~~~~~v~~i~i 120 (349)
.-. .. ..+++.+|+-
T Consensus 159 ~l~~~l------~g~~i~~i~G 174 (336)
T PRK08374 159 LLRENL------LGDTVKRIEA 174 (336)
T ss_pred HHHhhc------cccceEEEEE
Confidence 211 11 1467777754
No 41
>PLN02427 UDP-apiose/xylose synthase
Probab=89.72 E-value=0.6 Score=45.41 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=28.9
Q ss_pred CCCceEEEeCCCHHHHHHHhcCCcEEEEccC
Q 018848 7 KNSEFAEVNIYNEGSLLMALRDVDLVVHAAG 37 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~~~dvVIn~ag 37 (349)
++++++..|+.|.+.+.++++++|+|||||+
T Consensus 65 ~~~~~~~~Dl~d~~~l~~~~~~~d~ViHlAa 95 (386)
T PLN02427 65 GRIQFHRINIKHDSRLEGLIKMADLTINLAA 95 (386)
T ss_pred CCeEEEEcCCCChHHHHHHhhcCCEEEEccc
Confidence 3688999999999999999999999999997
No 42
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=89.71 E-value=0.44 Score=44.70 Aligned_cols=88 Identities=9% Similarity=0.024 Sum_probs=60.2
Q ss_pred CceEEEeCCCHHHHHHHhcCCcEEEEccCCCCCC--CcHHH-HHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcE
Q 018848 9 SEFAEVNIYNEGSLLMALRDVDLVVHAAGPFQQA--PKCTV-LEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPA 85 (349)
Q Consensus 9 ~~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~~~~--~~~~v-~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~ 85 (349)
+...++|+.|.+++.+.++.+|+||||..+-... ...++ -...+..+...+|+...+.- ..|-..|+++|..+
T Consensus 180 ~~~~~~d~~~~~~~~~~~~~~DilINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~----T~ll~~A~~~G~~~ 255 (289)
T PRK12548 180 CIVNVYDLNDTEKLKAEIASSDILVNATLVGMKPNDGETNIKDTSVFRKDLVVADTVYNPKK----TKLLEDAEAAGCKT 255 (289)
T ss_pred ceeEEechhhhhHHHhhhccCCEEEEeCCCCCCCCCCCCCCCcHHhcCCCCEEEEecCCCCC----CHHHHHHHHCCCee
Confidence 4566789999888888899999999999543321 11123 23456777889999875421 14556688899886
Q ss_pred EecCCcCcchhHHHHHHHHHHH
Q 018848 86 ITTGGIYPGVSNVMAAELVRVA 107 (349)
Q Consensus 86 v~~~G~~PGls~lla~~~~~~l 107 (349)
+.|. +||...++.++
T Consensus 256 ~~G~-------~ML~~Qa~~~f 270 (289)
T PRK12548 256 VGGL-------GMLLWQGAEAY 270 (289)
T ss_pred eCcH-------HHHHHHHHHHH
Confidence 6554 57777777654
No 43
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=89.40 E-value=0.46 Score=43.67 Aligned_cols=54 Identities=26% Similarity=0.308 Sum_probs=43.2
Q ss_pred ceEEEeCCCHHHHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCC
Q 018848 10 EFAEVNIYNEGSLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCD 63 (349)
Q Consensus 10 ~~~~~Dv~d~~~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~ 63 (349)
+.+.--..|.+.+.++|+ +.++||+++-||...-.-.+.++|-+.|++|+=.-.
T Consensus 46 ~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~eR 101 (249)
T PF02571_consen 46 EVRVGRLGDEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFER 101 (249)
T ss_pred eEEECCCCCHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEEc
Confidence 344444449999999997 999999999999744324899999999999998653
No 44
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=89.23 E-value=0.41 Score=43.97 Aligned_cols=55 Identities=18% Similarity=0.224 Sum_probs=44.1
Q ss_pred CceEEEeCCCHHHHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCC
Q 018848 9 SEFAEVNIYNEGSLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCD 63 (349)
Q Consensus 9 ~~~~~~Dv~d~~~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~ 63 (349)
.+.+.--..|.+++.++++ +.++||+++-||...-.-.+.++|-+.|++|+-.-.
T Consensus 44 ~~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR 100 (248)
T PRK08057 44 GPVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRLER 100 (248)
T ss_pred ceEEECCCCCHHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 3444444459999999998 889999999999744325899999999999998754
No 45
>KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion]
Probab=88.94 E-value=0.59 Score=43.54 Aligned_cols=34 Identities=15% Similarity=0.301 Sum_probs=30.2
Q ss_pred CCceEEEeCCCHHHHHHHhcCCcEEEEccCCCCC
Q 018848 8 NSEFAEVNIYNEGSLLMALRDVDLVVHAAGPFQQ 41 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~~~ 41 (349)
++-+..+|+.|++++++.++.+.+|||-.|--+.
T Consensus 110 Qvl~~~fd~~DedSIr~vvk~sNVVINLIGrd~e 143 (391)
T KOG2865|consen 110 QVLFMKFDLRDEDSIRAVVKHSNVVINLIGRDYE 143 (391)
T ss_pred ceeeeccCCCCHHHHHHHHHhCcEEEEeeccccc
Confidence 5778899999999999999999999999995443
No 46
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=87.54 E-value=1.4 Score=42.22 Aligned_cols=31 Identities=26% Similarity=0.229 Sum_probs=28.2
Q ss_pred CCceEEEeCCCHHHHHHHhcCCcEEEEccCC
Q 018848 8 NSEFAEVNIYNEGSLLMALRDVDLVVHAAGP 38 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~~~dvVIn~agP 38 (349)
+++++..|+.|.+++.++++++|+|||+|+.
T Consensus 70 ~~~~~~~Di~d~~~l~~~~~~~d~ViHlAa~ 100 (348)
T PRK15181 70 RFIFIQGDIRKFTDCQKACKNVDYVLHQAAL 100 (348)
T ss_pred ceEEEEccCCCHHHHHHHhhCCCEEEECccc
Confidence 4678999999999999999999999999974
No 47
>PRK08223 hypothetical protein; Validated
Probab=87.51 E-value=0.75 Score=43.07 Aligned_cols=58 Identities=16% Similarity=0.104 Sum_probs=41.0
Q ss_pred ccCCCCceEEEeC-CCHHHHHHHhcCCcEEEEccCCC-CCCCcHHHHHHHHHcCCCeEecC
Q 018848 4 TLGKNSEFAEVNI-YNEGSLLMALRDVDLVVHAAGPF-QQAPKCTVLEAAIETKTAYIDVC 62 (349)
Q Consensus 4 ~l~~~~~~~~~Dv-~d~~~l~~~~~~~dvVIn~agP~-~~~~~~~v~~aci~~Gv~YvDi~ 62 (349)
++++.++....+. -+++.+.++++++|+||+|...| .... ..+-++|.+.|+++|.-+
T Consensus 92 ~iNP~v~V~~~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r-~~ln~~c~~~~iP~V~~~ 151 (287)
T PRK08223 92 DINPELEIRAFPEGIGKENADAFLDGVDVYVDGLDFFEFDAR-RLVFAACQQRGIPALTAA 151 (287)
T ss_pred HHCCCCEEEEEecccCccCHHHHHhCCCEEEECCCCCcHHHH-HHHHHHHHHcCCCEEEEe
Confidence 4566655554442 13455788999999999999644 1223 578899999999999964
No 48
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=87.23 E-value=0.59 Score=38.39 Aligned_cols=50 Identities=20% Similarity=0.233 Sum_probs=36.9
Q ss_pred eEEEeCCCHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCC
Q 018848 11 FAEVNIYNEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCD 63 (349)
Q Consensus 11 ~~~~Dv~d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~ 63 (349)
...-++ +.+.+.++++++|+||+|...+.. . ..+.+.|.+.|+++|+.+.
T Consensus 76 ~~~~~~-~~~~~~~~~~~~d~vi~~~d~~~~-~-~~l~~~~~~~~~p~i~~~~ 125 (135)
T PF00899_consen 76 AIPEKI-DEENIEELLKDYDIVIDCVDSLAA-R-LLLNEICREYGIPFIDAGV 125 (135)
T ss_dssp EEESHC-SHHHHHHHHHTSSEEEEESSSHHH-H-HHHHHHHHHTT-EEEEEEE
T ss_pred eeeccc-ccccccccccCCCEEEEecCCHHH-H-HHHHHHHHHcCCCEEEEEe
Confidence 333344 457788999999999999976443 2 5788899999999999753
No 49
>PRK06392 homoserine dehydrogenase; Provisional
Probab=87.03 E-value=8.1 Score=36.97 Aligned_cols=84 Identities=11% Similarity=0.009 Sum_probs=57.1
Q ss_pred CCcEEEEccCCCCCCCc--HHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchh--HHHHHHH
Q 018848 28 DVDLVVHAAGPFQQAPK--CTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVS--NVMAAEL 103 (349)
Q Consensus 28 ~~dvVIn~agP~~~~~~--~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls--~lla~~~ 103 (349)
++|+||.|++... .+. ....+.|++.|+|.|-.+-. +......++.+.|+++|+.+...+-...|+. +.+ ...
T Consensus 81 ~~DVvVE~t~~~~-~g~~~~~~~~~aL~~G~hVVTaNKg-alA~~~~eL~~lA~~~g~~~~~eatV~~g~Pii~~~-~~~ 157 (326)
T PRK06392 81 KPDVIVDVTPASK-DGIREKNLYINAFEHGIDVVTANKS-GLANHWHDIMDSASKNRRIIRYEATVAGGVPLFSLR-DYS 157 (326)
T ss_pred CCCEEEECCCCCC-cCchHHHHHHHHHHCCCEEEcCCHH-HHHhhHHHHHHHHHHcCCeEEEeeeeeeccchhhhh-hhh
Confidence 7999999995332 211 35668999999999988742 3334445788889999999998876665553 223 222
Q ss_pred HHHHhcccCCCCcEEEE
Q 018848 104 VRVARNESKGEPERLRF 120 (349)
Q Consensus 104 ~~~l~~~~~~~v~~i~i 120 (349)
. ..+++.+|+-
T Consensus 158 ~------~g~~i~~i~G 168 (326)
T PRK06392 158 T------LPSRIKNFRG 168 (326)
T ss_pred c------ccCCEEEEEE
Confidence 2 2467888864
No 50
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=86.93 E-value=4.1 Score=38.94 Aligned_cols=68 Identities=13% Similarity=0.190 Sum_probs=53.8
Q ss_pred cCCcEEEEccCCCCCCCcH--HHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchh
Q 018848 27 RDVDLVVHAAGPFQQAPKC--TVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVS 96 (349)
Q Consensus 27 ~~~dvVIn~agP~~~~~~~--~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls 96 (349)
.+.|+||++.|.-...+ . .....++++|.|.|-.+-.. ......++.+.|+++|+.+...+-...|+.
T Consensus 77 ~~~dvvve~~~~d~~~~-~~~~~~~~al~~GkhVVTaNK~~-lA~~~~el~~~A~~~g~~l~yEAtV~gGiP 146 (333)
T COG0460 77 EDIDVVVELVGGDVEPA-EPADLYLKALENGKHVVTANKAL-LALHYHELREAAEKNGVKLLYEATVGGGIP 146 (333)
T ss_pred ccCCEEEecCcccCCch-hhHHHHHHHHHcCCeEECCCchH-hHhhHHHHHHHHHHhCCeEEEEeeeccCcc
Confidence 47899999998755544 4 67899999999999876543 333455778889999999999998888875
No 51
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=86.36 E-value=1.1 Score=40.41 Aligned_cols=44 Identities=11% Similarity=0.160 Sum_probs=35.2
Q ss_pred CHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCC
Q 018848 18 NEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCD 63 (349)
Q Consensus 18 d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~ 63 (349)
+.+.+.++++++|+||+|+..+.. . ..+-+.|.+.++++|+.+.
T Consensus 101 ~~~~~~~~~~~~DvVi~~~d~~~~-r-~~l~~~~~~~~ip~i~~g~ 144 (228)
T cd00757 101 DAENAEELIAGYDLVLDCTDNFAT-R-YLINDACVKLGKPLVSGAV 144 (228)
T ss_pred CHHHHHHHHhCCCEEEEcCCCHHH-H-HHHHHHHHHcCCCEEEEEe
Confidence 356778899999999999975433 2 4788999999999999753
No 52
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=86.10 E-value=1.3 Score=40.42 Aligned_cols=56 Identities=11% Similarity=0.202 Sum_probs=40.7
Q ss_pred cCCCCceEEEeCC-CHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecC
Q 018848 5 LGKNSEFAEVNIY-NEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVC 62 (349)
Q Consensus 5 l~~~~~~~~~Dv~-d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~ 62 (349)
+.+.++....+-. +.+.+.++++++|+||+|...+.. . ..+-++|.+.|+++|.-+
T Consensus 90 inp~v~i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~-r-~~ln~~~~~~~ip~v~~~ 146 (240)
T TIGR02355 90 INPHIAINPINAKLDDAELAALIAEHDIVVDCTDNVEV-R-NQLNRQCFAAKVPLVSGA 146 (240)
T ss_pred HCCCcEEEEEeccCCHHHHHHHhhcCCEEEEcCCCHHH-H-HHHHHHHHHcCCCEEEEE
Confidence 4555555444422 446678899999999999975543 2 468899999999999854
No 53
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=85.62 E-value=30 Score=31.99 Aligned_cols=154 Identities=19% Similarity=0.210 Sum_probs=83.5
Q ss_pred HHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeE-ecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchhHH--
Q 018848 22 LLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYI-DVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVSNV-- 98 (349)
Q Consensus 22 l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~Yv-Di~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls~l-- 98 (349)
+.....++|++|+=.-|-.. ...++.|+++|++.| -+||-.+ ++...+.+.+++ +++|.+.-|+=|+ |+
T Consensus 63 ~~~~~~~~DV~IDFT~P~~~---~~~l~~~~~~~~~lVIGTTGf~~--e~~~~l~~~a~~--v~vv~a~NfSiGv-nll~ 134 (266)
T COG0289 63 LLLVKADADVLIDFTTPEAT---LENLEFALEHGKPLVIGTTGFTE--EQLEKLREAAEK--VPVVIAPNFSLGV-NLLF 134 (266)
T ss_pred hhhcccCCCEEEECCCchhh---HHHHHHHHHcCCCeEEECCCCCH--HHHHHHHHHHhh--CCEEEeccchHHH-HHHH
Confidence 44556689999999999666 689999999998765 4666332 334456666665 7788888888886 33
Q ss_pred -HHHHHHHHHhcccCC--CCcEEEEEEeecCCCCCchhhHHH--HHHHhCC-----cceeeeCCeEEEecC-CCcceeeE
Q 018848 99 -MAAELVRVARNESKG--EPERLRFSYYTAGTGGAGPTILAT--SFLLLGE-----EVVAYNKGEEITLEP-YSGMLSVD 167 (349)
Q Consensus 99 -la~~~~~~l~~~~~~--~v~~i~i~~~~~g~~~~~~~~~~~--~l~~~~~-----p~~~~~~G~~~~v~~-~~~~~~~~ 167 (349)
++..+++ .++ .++=|+... .--.+.+|...+.. ++.+... -..+.|.|..-...+ --....++
T Consensus 135 ~l~~~aak-----~l~~~DiEIiE~HH-r~K~DAPSGTAl~lae~ia~~~~~~~~~~~v~~r~G~~g~r~~~~Igi~svR 208 (266)
T COG0289 135 KLAEQAAK-----VLDDYDIEIIEAHH-RHKKDAPSGTALKLAEAIAEARGQDLKDEAVYGREGATGARKEGEIGIHSVR 208 (266)
T ss_pred HHHHHHHH-----hcCCCCEEehhhhc-ccCCCCCcHHHHHHHHHHHHhhccccccceeecccCCcCCCCCCCceeEEee
Confidence 3444443 344 233232221 11234455443322 3333222 122234442111111 11123355
Q ss_pred ccCCceeeeEEeecCCcccchh
Q 018848 168 FGKGIGRKDVFLLNLPEVRSAR 189 (349)
Q Consensus 168 fp~~~G~~~~~~~~~~e~~tl~ 189 (349)
-|+=+|..++.-...+|..++.
T Consensus 209 ~G~ivG~H~V~F~~~GE~iei~ 230 (266)
T COG0289 209 GGDIVGEHEVIFAGEGERIEIR 230 (266)
T ss_pred cCCcceeEEEEEecCCcEEEEE
Confidence 5555677777766666666543
No 54
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=85.59 E-value=1.5 Score=41.37 Aligned_cols=71 Identities=15% Similarity=0.176 Sum_probs=40.5
Q ss_pred HHHHHHhc--CCc--EEEEcc--CCCCCCC-----------------------cHHHHHHHHHcCCCeEecCCChhHHHH
Q 018848 20 GSLLMALR--DVD--LVVHAA--GPFQQAP-----------------------KCTVLEAAIETKTAYIDVCDDTIYSQR 70 (349)
Q Consensus 20 ~~l~~~~~--~~d--vVIn~a--gP~~~~~-----------------------~~~v~~aci~~Gv~YvDi~~~~~~~~~ 70 (349)
+.++++.+ ++| ||||++ +||.... ..--+.||+++||.||+-+-..-. .
T Consensus 136 ~DI~~f~~~~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~~~aS~~YA~AAl~~g~~fvN~tP~~~a--~ 213 (295)
T PF07994_consen 136 EDIRDFKKENGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPEISASMLYAYAALEAGVPFVNGTPSNIA--D 213 (295)
T ss_dssp HHHHHHHHHTT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TTHHHHHHHHHHHHHTTEEEEE-SSSTTT--T
T ss_pred HHHHHHHHHhCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCcCChHHHHHHHHHHCCCCeEeccCcccc--C
Confidence 44566666 899 999998 3432211 012467899999999997754322 1
Q ss_pred HHHHHHHHHHcCCcEEecCCcC
Q 018848 71 AKSFKDRAIAANIPAITTGGIY 92 (349)
Q Consensus 71 ~~~l~~~a~~~g~~~v~~~G~~ 92 (349)
.-.+.+.|+++|++++-.=|-.
T Consensus 214 ~P~l~ela~~~gvpi~GdD~KT 235 (295)
T PF07994_consen 214 DPALVELAEEKGVPIAGDDGKT 235 (295)
T ss_dssp SHHHHHHHHHHTEEEEESSBS-
T ss_pred CHHHHHHHHHcCCCeecchHhh
Confidence 1144566888888766555544
No 55
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=85.25 E-value=2.4 Score=39.59 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=29.0
Q ss_pred CCceEEEeCCCHHHHHHHhcCCcEEEEccCCC
Q 018848 8 NSEFAEVNIYNEGSLLMALRDVDLVVHAAGPF 39 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~ 39 (349)
++++++.|+.|.+++.++++++|+|||++++.
T Consensus 44 ~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~~~ 75 (328)
T TIGR03466 44 DVEIVEGDLRDPASLRKAVAGCRALFHVAADY 75 (328)
T ss_pred CceEEEeeCCCHHHHHHHHhCCCEEEEeceec
Confidence 47889999999999999999999999999753
No 56
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=85.22 E-value=1.5 Score=38.74 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=34.9
Q ss_pred CHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCC
Q 018848 18 NEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCD 63 (349)
Q Consensus 18 d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~ 63 (349)
+.+.+.++++++|+||+|++-+.. . .-+-+.|.+.++++|+.+.
T Consensus 101 ~~~~~~~~~~~~D~Vi~~~d~~~~-r-~~l~~~~~~~~ip~i~~~~ 144 (202)
T TIGR02356 101 TAENLELLINNVDLVLDCTDNFAT-R-YLINDACVALGTPLISAAV 144 (202)
T ss_pred CHHHHHHHHhCCCEEEECCCCHHH-H-HHHHHHHHHcCCCEEEEEe
Confidence 345678899999999999964432 3 4688999999999999763
No 57
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=85.10 E-value=0.79 Score=43.19 Aligned_cols=33 Identities=24% Similarity=0.422 Sum_probs=30.1
Q ss_pred CCCceEEEeCCCHHHHHHHhcCCcEEEEccCCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALRDVDLVVHAAGPF 39 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~ 39 (349)
.++++++.|+.|++++.++++++|+|||+|+|.
T Consensus 56 ~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A~~~ 88 (322)
T PLN02986 56 ERLKLFKADLLEESSFEQAIEGCDAVFHTASPV 88 (322)
T ss_pred CceEEEecCCCCcchHHHHHhCCCEEEEeCCCc
Confidence 357889999999999999999999999999874
No 58
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=85.02 E-value=1.8 Score=41.14 Aligned_cols=32 Identities=6% Similarity=0.068 Sum_probs=28.3
Q ss_pred CCCceEEEeCCCHHHHHHHhcC--CcEEEEccCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALRD--VDLVVHAAGP 38 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~~--~dvVIn~agP 38 (349)
.++++++.|+.|.+++.+++++ +|+|||||+.
T Consensus 55 ~~~~~~~~Dl~d~~~l~~~~~~~~~d~ViH~Aa~ 88 (343)
T TIGR01472 55 ARMKLHYGDLTDSSNLRRIIDEIKPTEIYNLAAQ 88 (343)
T ss_pred cceeEEEeccCCHHHHHHHHHhCCCCEEEECCcc
Confidence 3578999999999999999985 6999999985
No 59
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=84.81 E-value=1.8 Score=41.28 Aligned_cols=30 Identities=17% Similarity=0.259 Sum_probs=26.7
Q ss_pred CCceEEEeCC-CHHHHHHHhcCCcEEEEccC
Q 018848 8 NSEFAEVNIY-NEGSLLMALRDVDLVVHAAG 37 (349)
Q Consensus 8 ~~~~~~~Dv~-d~~~l~~~~~~~dvVIn~ag 37 (349)
+++++..|+. |.+.+.++++++|+||+|++
T Consensus 47 ~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~aa 77 (347)
T PRK11908 47 RMHFFEGDITINKEWIEYHVKKCDVILPLVA 77 (347)
T ss_pred CeEEEeCCCCCCHHHHHHHHcCCCEEEECcc
Confidence 5889999997 77888899999999999986
No 60
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.
Probab=84.50 E-value=1.9 Score=41.07 Aligned_cols=67 Identities=16% Similarity=0.269 Sum_probs=44.1
Q ss_pred HHHHHHHhc--CCcEEEEccCCCC-CCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEec
Q 018848 19 EGSLLMALR--DVDLVVHAAGPFQ-QAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITT 88 (349)
Q Consensus 19 ~~~l~~~~~--~~dvVIn~agP~~-~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~ 88 (349)
++.+.+.++ ++|++||-. |-- ..+.---+.||+++||.||+.+-.. ....-++.+.++++|++++-.
T Consensus 112 ~~dv~~~lk~~~~dVlvnyl-PvGs~~A~~~YA~AAl~aG~afVN~~P~~--ia~~p~~a~~f~e~glPi~GD 181 (351)
T TIGR03450 112 PVDVVQALKDAKVDVLVSYL-PVGSEEADKFYAQCAIDAGVAFVNALPVF--IASDPEWAKKFTDAGVPIVGD 181 (351)
T ss_pred HHHHHHHHHhcCCCEEEECC-ccchHHHHHHHHHHHHHcCCceEeccCcc--ccCCHHHHHHHHHCCCCEecc
Confidence 345666666 799999977 332 1111134679999999999987532 223335677788999885533
No 61
>PRK06813 homoserine dehydrogenase; Validated
Probab=84.40 E-value=5.2 Score=38.59 Aligned_cols=84 Identities=12% Similarity=0.116 Sum_probs=57.3
Q ss_pred CCcEEEEccCCC---CCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchh--HHHHHH
Q 018848 28 DVDLVVHAAGPF---QQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVS--NVMAAE 102 (349)
Q Consensus 28 ~~dvVIn~agP~---~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls--~lla~~ 102 (349)
+.|+||.|.+.- ...+ ...++.|++.|+|.|-.+-.. ......++.+.|+++|+.+...+-...|+. +.+ ..
T Consensus 86 ~~dVvVe~T~s~~~~~e~a-~~~~~~aL~~G~hVVTANK~~-la~~~~eL~~lA~~~g~~~~yEasVggGiPiI~~l-~~ 162 (346)
T PRK06813 86 SGTVLVESTVTNLKDGNPG-KQYIKQAIEKKMDIVAISKGA-LVTNWREINEAAKIANVRIRYSGATAAALPTLDIG-QF 162 (346)
T ss_pred CCCEEEECCCCccCCchHH-HHHHHHHHHCCCeEEcCCcHH-HhccHHHHHHHHHHcCCeEEEeeeeeeccchHHHH-hh
Confidence 589999997311 1334 477799999999999876433 334446778889999999998876665554 222 22
Q ss_pred HHHHHhcccCCCCcEEEE
Q 018848 103 LVRVARNESKGEPERLRF 120 (349)
Q Consensus 103 ~~~~l~~~~~~~v~~i~i 120 (349)
.. ..+++.+|+-
T Consensus 163 ~~------~g~~I~~i~G 174 (346)
T PRK06813 163 SL------AGCHIEKIEG 174 (346)
T ss_pred hc------ccCcEEEEEE
Confidence 22 3577888864
No 62
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=84.35 E-value=1.6 Score=40.23 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=37.4
Q ss_pred CCceEEEeCCCHHHHHHHh------cC-CcEEEEccCCCCC---CCcHHHHHHHHHcCCC
Q 018848 8 NSEFAEVNIYNEGSLLMAL------RD-VDLVVHAAGPFQQ---APKCTVLEAAIETKTA 57 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~------~~-~dvVIn~agP~~~---~~~~~v~~aci~~Gv~ 57 (349)
+++.+.+|..|++++.+++ ++ +|.|+.|+++... .. ..++++|.++|+.
T Consensus 40 ~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~~~~~~~~-~~~i~aa~~~gv~ 98 (285)
T TIGR03649 40 NEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPIPDLAPPM-IKFIDFARSKGVR 98 (285)
T ss_pred CCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCCCChhHHH-HHHHHHHHHcCCC
Confidence 4678899999999999999 57 9999999875432 12 2567778888874
No 63
>KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.20 E-value=0.72 Score=39.78 Aligned_cols=36 Identities=28% Similarity=0.442 Sum_probs=31.9
Q ss_pred ccccCCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccC
Q 018848 2 VSTLGKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAG 37 (349)
Q Consensus 2 ~~~l~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~ag 37 (349)
+.++|.++-+.-+|+++++++++.+. +.|+.|||+|
T Consensus 50 akelg~~~vf~padvtsekdv~aala~ak~kfgrld~~vncag 92 (260)
T KOG1199|consen 50 AKELGGKVVFTPADVTSEKDVRAALAKAKAKFGRLDALVNCAG 92 (260)
T ss_pred HHHhCCceEEeccccCcHHHHHHHHHHHHhhccceeeeeeccc
Confidence 46789999999999999999988775 6799999998
No 64
>PRK07877 hypothetical protein; Provisional
Probab=84.14 E-value=1.9 Score=45.63 Aligned_cols=58 Identities=16% Similarity=0.087 Sum_probs=43.2
Q ss_pred ccCCCCceEEEeCC-CHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCC
Q 018848 4 TLGKNSEFAEVNIY-NEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCD 63 (349)
Q Consensus 4 ~l~~~~~~~~~Dv~-d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~ 63 (349)
++++.++...++.. +++.+.++++++|+||+|+.- +.+. .-+-++|.+.|+++|--++
T Consensus 171 ~inp~i~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~-~~~R-~~ln~~a~~~~iP~i~~~~ 229 (722)
T PRK07877 171 ELDPYLPVEVFTDGLTEDNVDAFLDGLDVVVEECDS-LDVK-VLLREAARARRIPVLMATS 229 (722)
T ss_pred HHCCCCEEEEEeccCCHHHHHHHhcCCCEEEECCCC-HHHH-HHHHHHHHHcCCCEEEEcC
Confidence 34555555554442 467899999999999999964 3434 5788999999999998764
No 65
>PRK05865 hypothetical protein; Provisional
Probab=84.04 E-value=5.5 Score=43.07 Aligned_cols=57 Identities=23% Similarity=0.265 Sum_probs=43.4
Q ss_pred CCCceEEEeCCCHHHHHHHhcCCcEEEEccCCCCCC------CcHHHHHHHHHcCC-CeEecCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALRDVDLVVHAAGPFQQA------PKCTVLEAAIETKT-AYIDVCD 63 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~~~~------~~~~v~~aci~~Gv-~YvDi~~ 63 (349)
.++++++.|+.|.+++.++++++|+||||+++.... +-..++++|.++|+ +.|-++.
T Consensus 40 ~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~~~~~~vNv~GT~nLLeAa~~~gvkr~V~iSS 103 (854)
T PRK05865 40 SSADFIAADIRDATAVESAMTGADVVAHCAWVRGRNDHINIDGTANVLKAMAETGTGRIVFTSS 103 (854)
T ss_pred cCceEEEeeCCCHHHHHHHHhCCCEEEECCCcccchHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence 357889999999999999999999999999753210 00357788888887 5666654
No 66
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=83.91 E-value=1.4 Score=38.49 Aligned_cols=57 Identities=16% Similarity=0.066 Sum_probs=40.4
Q ss_pred CceEEEeCCCHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhH
Q 018848 9 SEFAEVNIYNEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIY 67 (349)
Q Consensus 9 ~~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~ 67 (349)
.+...+|..|.+++.+.++++|+||+|. |..... ......+.+.+.-.+|++..++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~diVi~at-~~g~~~-~~~~~~~~~~~~vv~D~~~~~~~ 134 (194)
T cd01078 78 EGVGAVETSDDAARAAAIKGADVVFAAG-AAGVEL-LEKLAWAPKPLAVAADVNAVPPV 134 (194)
T ss_pred CcEEEeeCCCHHHHHHHHhcCCEEEECC-CCCcee-chhhhcccCceeEEEEccCCCCC
Confidence 4566788999999999999999999987 444322 13333344457779998876654
No 67
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=83.65 E-value=0.97 Score=43.52 Aligned_cols=40 Identities=20% Similarity=0.131 Sum_probs=32.5
Q ss_pred HhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhH
Q 018848 25 ALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIY 67 (349)
Q Consensus 25 ~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~ 67 (349)
..+++|+|+-|++.... ..++.+|+++|+|.||.+++..+
T Consensus 65 ~~~~vD~Vf~alP~~~~---~~~v~~a~~aG~~VID~S~~fR~ 104 (343)
T PRK00436 65 ILAGADVVFLALPHGVS---MDLAPQLLEAGVKVIDLSADFRL 104 (343)
T ss_pred HhcCCCEEEECCCcHHH---HHHHHHHHhCCCEEEECCcccCC
Confidence 44689999999964433 58999999999999999987644
No 68
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=83.59 E-value=1.4 Score=42.46 Aligned_cols=40 Identities=18% Similarity=-0.012 Sum_probs=34.3
Q ss_pred HHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCC
Q 018848 22 LLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDD 64 (349)
Q Consensus 22 l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~ 64 (349)
+.+++.++|+|+.|++|+.. ...++.|+++|+..||-+++
T Consensus 72 ~~el~~~vDVVIdaT~~~~~---~e~a~~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 72 IEDLLEKADIVVDATPGGVG---AKNKELYEKAGVKAIFQGGE 111 (341)
T ss_pred hhHhhccCCEEEECCCchhh---HHHHHHHHHCCCEEEEcCCC
Confidence 44556789999999998766 58999999999999999875
No 69
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=83.54 E-value=1 Score=42.30 Aligned_cols=34 Identities=26% Similarity=0.424 Sum_probs=30.3
Q ss_pred CCCceEEEeCCCHHHHHHHhcCCcEEEEccCCCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALRDVDLVVHAAGPFQ 40 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~~ 40 (349)
+++++++.|+.|++++.++++++|+|||+++|..
T Consensus 55 ~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A~~~~ 88 (322)
T PLN02662 55 ERLHLFKANLLEEGSFDSVVDGCEGVFHTASPFY 88 (322)
T ss_pred CceEEEeccccCcchHHHHHcCCCEEEEeCCccc
Confidence 3578899999999999999999999999998753
No 70
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=83.36 E-value=1.2 Score=42.06 Aligned_cols=33 Identities=24% Similarity=0.508 Sum_probs=29.5
Q ss_pred CCCceEEEeCCCHHHHHHHhcCCcEEEEccCCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALRDVDLVVHAAGPF 39 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~ 39 (349)
.++++++.|+.|.+++.++++++|+|||||++.
T Consensus 56 ~~~~~~~~D~~d~~~~~~~~~~~d~vih~A~~~ 88 (325)
T PLN02989 56 ERLKLFKADLLDEGSFELAIDGCETVFHTASPV 88 (325)
T ss_pred CceEEEeCCCCCchHHHHHHcCCCEEEEeCCCC
Confidence 357888999999999999999999999999853
No 71
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=83.17 E-value=1 Score=40.97 Aligned_cols=38 Identities=16% Similarity=0.374 Sum_probs=31.0
Q ss_pred CccccC-CCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 1 MVSTLG-KNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 1 ~~~~l~-~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
|+.+++ .++..+.+|+.|.+++.+++. +.|++||-||=
T Consensus 46 la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDiLvNNAGl 91 (246)
T COG4221 46 LADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRIDILVNNAGL 91 (246)
T ss_pred HHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCcccEEEecCCC
Confidence 355667 578999999999998666665 79999999993
No 72
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=82.88 E-value=2.1 Score=37.80 Aligned_cols=58 Identities=14% Similarity=0.275 Sum_probs=41.3
Q ss_pred ccCCCCceEEEe--CCC-HHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCC
Q 018848 4 TLGKNSEFAEVN--IYN-EGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCD 63 (349)
Q Consensus 4 ~l~~~~~~~~~D--v~d-~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~ 63 (349)
++++.++....+ +.+ .+...++++++|+||+|..++.. . ..+-+.|.+.++++|..+.
T Consensus 86 ~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~-~-~~ln~~c~~~~ip~i~~~~ 146 (198)
T cd01485 86 ELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYER-T-AKVNDVCRKHHIPFISCAT 146 (198)
T ss_pred HHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCCHHH-H-HHHHHHHHHcCCCEEEEEe
Confidence 345665555443 321 44567889999999999877443 2 4788999999999999764
No 73
>PLN02240 UDP-glucose 4-epimerase
Probab=82.66 E-value=3 Score=39.60 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=28.1
Q ss_pred CCCceEEEeCCCHHHHHHHhc--CCcEEEEccCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALR--DVDLVVHAAGP 38 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~--~~dvVIn~agP 38 (349)
.+++++..|+.|++++.++++ ++|.||||++.
T Consensus 58 ~~~~~~~~D~~~~~~l~~~~~~~~~d~vih~a~~ 91 (352)
T PLN02240 58 DNLVFHKVDLRDKEALEKVFASTRFDAVIHFAGL 91 (352)
T ss_pred ccceEEecCcCCHHHHHHHHHhCCCCEEEEcccc
Confidence 457889999999999999886 78999999973
No 74
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=82.56 E-value=16 Score=32.51 Aligned_cols=52 Identities=19% Similarity=0.265 Sum_probs=35.7
Q ss_pred ceEEEeCCCHHHHHHHhc-CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCC
Q 018848 10 EFAEVNIYNEGSLLMALR-DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDD 64 (349)
Q Consensus 10 ~~~~~Dv~d~~~l~~~~~-~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~ 64 (349)
-.+.+|-.+++.+++.++ +.++++|..| +.. . ..++..|.++|+.||=+...
T Consensus 73 ~plSIDT~~~~v~~~aL~~g~~~ind~~~-~~~-~-~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 73 VPLSIDTFNPEVAEAALKAGADIINDISG-FED-D-PEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp SEEEEEESSHHHHHHHHHHTSSEEEETTT-TSS-S-TTHHHHHHHHTSEEEEESES
T ss_pred eEEEEECCCHHHHHHHHHcCcceEEeccc-ccc-c-chhhhhhhcCCCEEEEEecc
Confidence 356777778877777776 7777777776 221 2 37778888888877766544
No 75
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=82.47 E-value=1 Score=36.22 Aligned_cols=37 Identities=22% Similarity=0.156 Sum_probs=30.6
Q ss_pred cCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChh
Q 018848 27 RDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTI 66 (349)
Q Consensus 27 ~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~ 66 (349)
+++|+|+.|++.... ..++..+++.|+..||.+++..
T Consensus 65 ~~~Dvvf~a~~~~~~---~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 65 SDVDVVFLALPHGAS---KELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp TTESEEEE-SCHHHH---HHHHHHHHHTTSEEEESSSTTT
T ss_pred hcCCEEEecCchhHH---HHHHHHHhhCCcEEEeCCHHHh
Confidence 799999999874443 5899999999999999998763
No 76
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=82.38 E-value=1.4 Score=41.78 Aligned_cols=31 Identities=39% Similarity=0.401 Sum_probs=28.7
Q ss_pred CCceEEEeCCCHHHHHHHhcCCcEEEEccCC
Q 018848 8 NSEFAEVNIYNEGSLLMALRDVDLVVHAAGP 38 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~~~dvVIn~agP 38 (349)
++++++.|+.|.+++.++++++|+|||++|.
T Consensus 54 ~~~~v~~Dl~d~~~l~~~~~~iD~Vih~Ag~ 84 (324)
T TIGR03589 54 CLRFFIGDVRDKERLTRALRGVDYVVHAAAL 84 (324)
T ss_pred cEEEEEccCCCHHHHHHHHhcCCEEEECccc
Confidence 5788999999999999999999999999984
No 77
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=82.29 E-value=1.8 Score=40.49 Aligned_cols=28 Identities=21% Similarity=0.186 Sum_probs=23.9
Q ss_pred EEEeCCCHHHHHHHhc--CCcEEEEccCCC
Q 018848 12 AEVNIYNEGSLLMALR--DVDLVVHAAGPF 39 (349)
Q Consensus 12 ~~~Dv~d~~~l~~~~~--~~dvVIn~agP~ 39 (349)
+..|+.|.+++.++++ ++|+||||++..
T Consensus 36 ~~~Dl~d~~~~~~~~~~~~~D~Vih~Aa~~ 65 (299)
T PRK09987 36 YCGDFSNPEGVAETVRKIRPDVIVNAAAHT 65 (299)
T ss_pred ccCCCCCHHHHHHHHHhcCCCEEEECCccC
Confidence 3569999999999998 589999999743
No 78
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=82.27 E-value=2.3 Score=38.91 Aligned_cols=56 Identities=13% Similarity=0.201 Sum_probs=39.4
Q ss_pred cCCCCceEEEeCC-CHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecC
Q 018848 5 LGKNSEFAEVNIY-NEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVC 62 (349)
Q Consensus 5 l~~~~~~~~~Dv~-d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~ 62 (349)
+.+.++....+-. +++.+.++++++|+||+|+..+.. . ..+-++|.+.++++|..+
T Consensus 98 lnp~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~~-r-~~ln~~~~~~~ip~v~~~ 154 (245)
T PRK05690 98 INPHIAIETINARLDDDELAALIAGHDLVLDCTDNVAT-R-NQLNRACFAAKKPLVSGA 154 (245)
T ss_pred HCCCCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHHH-H-HHHHHHHHHhCCEEEEee
Confidence 3454444333322 355678899999999999975543 2 468899999999999854
No 79
>PRK09291 short chain dehydrogenase; Provisional
Probab=82.09 E-value=2 Score=38.65 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=29.6
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-CCcEEEEccCCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-DVDLVVHAAGPF 39 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-~~dvVIn~agP~ 39 (349)
+.++.++++|+.|++++.+++. +.|+||||+|..
T Consensus 50 ~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~ag~~ 84 (257)
T PRK09291 50 GLALRVEKLDLTDAIDRAQAAEWDVDVLLNNAGIG 84 (257)
T ss_pred CCcceEEEeeCCCHHHHHHHhcCCCCEEEECCCcC
Confidence 4468899999999999999887 899999999853
No 80
>PLN00198 anthocyanidin reductase; Provisional
Probab=82.03 E-value=1.4 Score=41.82 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=29.0
Q ss_pred CCceEEEeCCCHHHHHHHhcCCcEEEEccCCC
Q 018848 8 NSEFAEVNIYNEGSLLMALRDVDLVVHAAGPF 39 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~ 39 (349)
+++++..|+.|.+++.++++++|+|||+|++.
T Consensus 60 ~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~ 91 (338)
T PLN00198 60 DLKIFGADLTDEESFEAPIAGCDLVFHVATPV 91 (338)
T ss_pred ceEEEEcCCCChHHHHHHHhcCCEEEEeCCCC
Confidence 47888999999999999999999999999863
No 81
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=81.53 E-value=2.6 Score=38.06 Aligned_cols=65 Identities=14% Similarity=0.227 Sum_probs=41.1
Q ss_pred HHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCc-EEecCCcCc
Q 018848 21 SLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIP-AITTGGIYP 93 (349)
Q Consensus 21 ~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~-~v~~~G~~P 93 (349)
++.+.++++|+||||++|... . ..+++...+..+.| |++... . ..+.++|++.|.. +..|.++.|
T Consensus 90 ~l~~~l~~~dvlIgaT~~G~~-~-~~~l~~m~~~~ivf-~lsnP~--~---e~~~~~A~~~ga~i~a~G~~~~~ 155 (226)
T cd05311 90 TLKEALKGADVFIGVSRPGVV-K-KEMIKKMAKDPIVF-ALANPV--P---EIWPEEAKEAGADIVATGRSDFP 155 (226)
T ss_pred CHHHHHhcCCEEEeCCCCCCC-C-HHHHHhhCCCCEEE-EeCCCC--C---cCCHHHHHHcCCcEEEeCCCCCc
Confidence 465677889999999976553 3 35666555666666 676322 1 2456778888875 554533433
No 82
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=81.33 E-value=2.2 Score=41.35 Aligned_cols=31 Identities=26% Similarity=0.276 Sum_probs=27.3
Q ss_pred CceEEEeCCCHHHHHHHhcCCcEEEEccCCC
Q 018848 9 SEFAEVNIYNEGSLLMALRDVDLVVHAAGPF 39 (349)
Q Consensus 9 ~~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~ 39 (349)
.+++..|+.|.+.+.++++++|+||||++..
T Consensus 66 ~~~~~~Dl~d~~~~~~~~~~~D~Vih~Aa~~ 96 (370)
T PLN02695 66 HEFHLVDLRVMENCLKVTKGVDHVFNLAADM 96 (370)
T ss_pred ceEEECCCCCHHHHHHHHhCCCEEEEccccc
Confidence 4678889999999999999999999999743
No 83
>PRK08328 hypothetical protein; Provisional
Probab=81.14 E-value=3.2 Score=37.61 Aligned_cols=57 Identities=12% Similarity=0.147 Sum_probs=38.5
Q ss_pred cCCCCceEEEeC-CCHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCC
Q 018848 5 LGKNSEFAEVNI-YNEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCD 63 (349)
Q Consensus 5 l~~~~~~~~~Dv-~d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~ 63 (349)
+.+.++....+- -+++.+.++++++|+||+|+..+. +. .-+-++|.+.|+++|.-+.
T Consensus 94 ~np~v~v~~~~~~~~~~~~~~~l~~~D~Vid~~d~~~-~r-~~l~~~~~~~~ip~i~g~~ 151 (231)
T PRK08328 94 FNSDIKIETFVGRLSEENIDEVLKGVDVIVDCLDNFE-TR-YLLDDYAHKKGIPLVHGAV 151 (231)
T ss_pred hCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHH-HH-HHHHHHHHHcCCCEEEEee
Confidence 344444333321 245667889999999999996533 22 4566779999999998653
No 84
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=80.47 E-value=2.6 Score=40.75 Aligned_cols=55 Identities=16% Similarity=0.140 Sum_probs=38.8
Q ss_pred cCCCCceEE--EeCCCHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecC
Q 018848 5 LGKNSEFAE--VNIYNEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVC 62 (349)
Q Consensus 5 l~~~~~~~~--~Dv~d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~ 62 (349)
+.+.++... -.++ .+.+.++++++|+||+|+.-+.. . .-+-++|.+.++++|..+
T Consensus 94 ~np~v~v~~~~~~i~-~~~~~~~~~~~DvVvd~~d~~~~-r-~~~n~~c~~~~ip~v~~~ 150 (355)
T PRK05597 94 LNPDVKVTVSVRRLT-WSNALDELRDADVILDGSDNFDT-R-HLASWAAARLGIPHVWAS 150 (355)
T ss_pred HCCCcEEEEEEeecC-HHHHHHHHhCCCEEEECCCCHHH-H-HHHHHHHHHcCCCEEEEE
Confidence 445444333 3343 45667889999999999975443 2 467899999999999864
No 85
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=80.04 E-value=1.3 Score=41.32 Aligned_cols=51 Identities=20% Similarity=0.292 Sum_probs=32.1
Q ss_pred EEeCCCHHHHHHHhc--CCcEEEEccCCCC----------------CCCcHHHHHHHHHcCCCeEecCCC
Q 018848 13 EVNIYNEGSLLMALR--DVDLVVHAAGPFQ----------------QAPKCTVLEAAIETKTAYIDVCDD 64 (349)
Q Consensus 13 ~~Dv~d~~~l~~~~~--~~dvVIn~agP~~----------------~~~~~~v~~aci~~Gv~YvDi~~~ 64 (349)
.+|+.|.+++.++++ +.|+||||++-.. ... ..++++|.+.|+++|=+|.+
T Consensus 34 ~~dl~d~~~~~~~~~~~~pd~Vin~aa~~~~~~ce~~p~~a~~iN~~~~-~~la~~~~~~~~~li~~STd 102 (286)
T PF04321_consen 34 DLDLTDPEAVAKLLEAFKPDVVINCAAYTNVDACEKNPEEAYAINVDAT-KNLAEACKERGARLIHISTD 102 (286)
T ss_dssp CS-TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTHHH-HHHHHHHHHCT-EEEEEEEG
T ss_pred hcCCCCHHHHHHHHHHhCCCeEeccceeecHHhhhhChhhhHHHhhHHH-HHHHHHHHHcCCcEEEeecc
Confidence 679999999999988 6899999996210 001 25778888888888877754
No 86
>PRK06179 short chain dehydrogenase; Provisional
Probab=80.00 E-value=1.7 Score=39.65 Aligned_cols=32 Identities=25% Similarity=0.459 Sum_probs=28.1
Q ss_pred CCceEEEeCCCHHHHHHHhcC-------CcEEEEccCCC
Q 018848 8 NSEFAEVNIYNEGSLLMALRD-------VDLVVHAAGPF 39 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~~-------~dvVIn~agP~ 39 (349)
+++++++|+.|++++.+++++ .|+||||+|..
T Consensus 46 ~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~li~~ag~~ 84 (270)
T PRK06179 46 GVELLELDVTDDASVQAAVDEVIARAGRIDVLVNNAGVG 84 (270)
T ss_pred CCeeEEeecCCHHHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence 578999999999999998874 69999999964
No 87
>PRK14851 hypothetical protein; Provisional
Probab=79.98 E-value=3.1 Score=43.83 Aligned_cols=57 Identities=23% Similarity=0.241 Sum_probs=40.5
Q ss_pred ccCCCCceEEE--eCCCHHHHHHHhcCCcEEEEccCCCC-CCCcHHHHHHHHHcCCCeEecC
Q 018848 4 TLGKNSEFAEV--NIYNEGSLLMALRDVDLVVHAAGPFQ-QAPKCTVLEAAIETKTAYIDVC 62 (349)
Q Consensus 4 ~l~~~~~~~~~--Dv~d~~~l~~~~~~~dvVIn~agP~~-~~~~~~v~~aci~~Gv~YvDi~ 62 (349)
++++.++...+ .+ +++.+.++++++|+||+|...|. ... ..+.++|.+.|+++|+.+
T Consensus 108 ~inP~~~I~~~~~~i-~~~n~~~~l~~~DvVid~~D~~~~~~r-~~l~~~c~~~~iP~i~~g 167 (679)
T PRK14851 108 SINPFLEITPFPAGI-NADNMDAFLDGVDVVLDGLDFFQFEIR-RTLFNMAREKGIPVITAG 167 (679)
T ss_pred HhCCCCeEEEEecCC-ChHHHHHHHhCCCEEEECCCCCcHHHH-HHHHHHHHHCCCCEEEee
Confidence 34555444443 44 45678899999999999996432 222 368889999999999865
No 88
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=79.93 E-value=20 Score=33.45 Aligned_cols=64 Identities=14% Similarity=0.087 Sum_probs=44.7
Q ss_pred HHHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEE
Q 018848 20 GSLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAI 86 (349)
Q Consensus 20 ~~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v 86 (349)
+.++++++ ++|+.|..+.|.+- ...+.-|+++|+..|=+-.|.--.+++.++...+++.|++++
T Consensus 55 ~tV~EA~~~~~a~~svI~Vp~~~a---adai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g~~ii 120 (293)
T COG0074 55 NTVEEAVKETGANASVIFVPPPFA---ADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKGTRLI 120 (293)
T ss_pred HHHHHHHHhhCCCEEEEecCcHHH---HHHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhcCCEEE
Confidence 34555555 78999999977665 467788889998877654443234555577888999996544
No 89
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=79.85 E-value=4 Score=37.96 Aligned_cols=32 Identities=25% Similarity=0.355 Sum_probs=27.9
Q ss_pred CCceEEEeCCCHHHHHHHhc--CCcEEEEccCCC
Q 018848 8 NSEFAEVNIYNEGSLLMALR--DVDLVVHAAGPF 39 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~--~~dvVIn~agP~ 39 (349)
+++.+.+|+.|++++.++++ ++|+||||+|+.
T Consensus 48 ~~~~~~~D~~~~~~~~~~~~~~~~d~vv~~ag~~ 81 (328)
T TIGR01179 48 RVTFVEGDLRDRELLDRLFEEHKIDAVIHFAGLI 81 (328)
T ss_pred ceEEEECCCCCHHHHHHHHHhCCCcEEEECcccc
Confidence 45688999999999999987 799999999854
No 90
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=79.74 E-value=7.3 Score=37.55 Aligned_cols=69 Identities=10% Similarity=0.097 Sum_probs=47.5
Q ss_pred HHHHHhcCCcEEEEccC---CCCCCCcHHHHHHHHHcCCCeEecCCChhH-HHHHHHHHHHHHHcCCcEEecCCcCcch
Q 018848 21 SLLMALRDVDLVVHAAG---PFQQAPKCTVLEAAIETKTAYIDVCDDTIY-SQRAKSFKDRAIAANIPAITTGGIYPGV 95 (349)
Q Consensus 21 ~l~~~~~~~dvVIn~ag---P~~~~~~~~v~~aci~~Gv~YvDi~~~~~~-~~~~~~l~~~a~~~g~~~v~~~G~~PGl 95 (349)
++++++.+.|+++-++. |-..+ ..++.+|+++|+|.+= |-|+ .++..++-+.|+++|+.+..+- +.|..
T Consensus 55 ~~eell~d~Di~~V~ipt~~P~~~H--~e~a~~aL~aGkHVL~---EKPla~~Ea~el~~~A~~~g~~l~v~~-f~p~~ 127 (343)
T TIGR01761 55 EVEELPDDIDIACVVVRSAIVGGQG--SALARALLARGIHVLQ---EHPLHPRDIQDLLRLAERQGRRYLVNT-FYPHL 127 (343)
T ss_pred CHHHHhcCCCEEEEEeCCCCCCccH--HHHHHHHHhCCCeEEE---cCCCCHHHHHHHHHHHHHcCCEEEEEe-cCHHH
Confidence 45566676666666652 22222 6999999999999875 1111 4666788889999999888754 66765
No 91
>PRK06153 hypothetical protein; Provisional
Probab=79.72 E-value=2.7 Score=41.06 Aligned_cols=53 Identities=13% Similarity=0.055 Sum_probs=37.5
Q ss_pred CCCceEEEeCCCHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCD 63 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~ 63 (349)
.+++.....+ +++.+. .+++||+||.|+.-+.. . .-+.+.|.+.|+++||++-
T Consensus 247 ~~I~~~~~~I-~~~n~~-~L~~~DiV~dcvDn~~a-R-~~ln~~a~~~gIP~Id~G~ 299 (393)
T PRK06153 247 RGIVPHPEYI-DEDNVD-ELDGFTFVFVCVDKGSS-R-KLIVDYLEALGIPFIDVGM 299 (393)
T ss_pred CeEEEEeecC-CHHHHH-HhcCCCEEEEcCCCHHH-H-HHHHHHHHHcCCCEEEeee
Confidence 3444444445 556554 67899999999963332 2 4678999999999999864
No 92
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=79.38 E-value=1.7 Score=39.59 Aligned_cols=34 Identities=29% Similarity=0.337 Sum_probs=28.2
Q ss_pred cCCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 5 LGKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 5 l~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
++.++.++++|+.|+++++++++ +.|++||++|-
T Consensus 55 ~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~g~iD~li~nAG~ 95 (256)
T PRK07889 55 LPEPAPVLELDVTNEEHLASLADRVREHVDGLDGVVHSIGF 95 (256)
T ss_pred cCCCCcEEeCCCCCHHHHHHHHHHHHHHcCCCcEEEEcccc
Confidence 44467889999999999888764 68999999983
No 93
>PLN02253 xanthoxin dehydrogenase
Probab=79.21 E-value=2.3 Score=38.98 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=28.0
Q ss_pred CCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
.++.++++|+.|++++.++++ ++|+|||++|.
T Consensus 66 ~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~id~li~~Ag~ 104 (280)
T PLN02253 66 PNVCFFHCDVTVEDDVSRAVDFTVDKFGTLDIMVNNAGL 104 (280)
T ss_pred CceEEEEeecCCHHHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 357899999999999988887 68999999984
No 94
>PRK06182 short chain dehydrogenase; Validated
Probab=79.03 E-value=2.6 Score=38.61 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=28.1
Q ss_pred CCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 8 NSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
+++++++|+.|++++.++++ ++|+|||++|..
T Consensus 47 ~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~~ag~~ 85 (273)
T PRK06182 47 GVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVNNAGYG 85 (273)
T ss_pred CCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 47899999999999988886 789999999853
No 95
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=78.98 E-value=3.3 Score=36.20 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=30.5
Q ss_pred CCCceEEEeCCCHHHHHHHhcCCcEEEEccCCCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALRDVDLVVHAAGPFQ 40 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~~ 40 (349)
+.+..++-|+.|++++.+.+.+.|+||++.|+..
T Consensus 41 ~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~~ 74 (211)
T COG2910 41 QGVTILQKDIFDLTSLASDLAGHDAVISAFGAGA 74 (211)
T ss_pred ccceeecccccChhhhHhhhcCCceEEEeccCCC
Confidence 3577999999999999999999999999998664
No 96
>PRK08309 short chain dehydrogenase; Provisional
Probab=78.97 E-value=4.8 Score=34.85 Aligned_cols=56 Identities=13% Similarity=0.103 Sum_probs=43.2
Q ss_pred CCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCCCCCCcHHHHHHHHHcCCC-----eEecCCCh
Q 018848 7 KNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPFQQAPKCTVLEAAIETKTA-----YIDVCDDT 65 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~~~~~~~~v~~aci~~Gv~-----YvDi~~~~ 65 (349)
.++..+.+|+.|++++.++++ +.|++++.+-... . -.++++|-+.|++ ++-+-|+.
T Consensus 47 ~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~id~lv~~vh~~~--~-~~~~~~~~~~gv~~~~~~~~h~~gs~ 114 (177)
T PRK08309 47 ESITPLPLDYHDDDALKLAIKSTIEKNGPFDLAVAWIHSSA--K-DALSVVCRELDGSSETYRLFHVLGSA 114 (177)
T ss_pred CcEEEEEccCCCHHHHHHHHHHHHHHcCCCeEEEEeccccc--h-hhHHHHHHHHccCCCCceEEEEeCCc
Confidence 357788899999999988876 4689999985332 3 4899999999988 77776543
No 97
>PRK08265 short chain dehydrogenase; Provisional
Probab=78.41 E-value=1.8 Score=39.37 Aligned_cols=34 Identities=26% Similarity=0.479 Sum_probs=28.6
Q ss_pred cCCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 5 LGKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 5 l~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
++.++.++++|+.|.+++.++++ ..|++||++|.
T Consensus 50 ~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~lv~~ag~ 90 (261)
T PRK08265 50 LGERARFIATDITDDAAIERAVATVVARFGRVDILVNLACT 90 (261)
T ss_pred hCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 45568899999999999888776 57999999984
No 98
>PRK05866 short chain dehydrogenase; Provisional
Probab=78.19 E-value=2.3 Score=39.67 Aligned_cols=34 Identities=15% Similarity=0.266 Sum_probs=28.8
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
+.++.++++|+.|.+++.++++ +.|+||||+|-.
T Consensus 88 ~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~id~li~~AG~~ 128 (293)
T PRK05866 88 GGDAMAVPCDLSDLDAVDALVADVEKRIGGVDILINNAGRS 128 (293)
T ss_pred CCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 4456789999999999988887 789999999843
No 99
>PRK06180 short chain dehydrogenase; Provisional
Probab=78.06 E-value=2.3 Score=39.06 Aligned_cols=34 Identities=12% Similarity=0.116 Sum_probs=28.7
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
+.++..+++|+.|++++.++++ ++|+||||+|..
T Consensus 49 ~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d~vv~~ag~~ 89 (277)
T PRK06180 49 PDRALARLLDVTDFDAIDAVVADAEATFGPIDVLVNNAGYG 89 (277)
T ss_pred CCCeeEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 3467889999999999988877 579999999853
No 100
>PRK05867 short chain dehydrogenase; Provisional
Probab=77.90 E-value=2.5 Score=38.13 Aligned_cols=34 Identities=18% Similarity=0.222 Sum_probs=28.6
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
+.++..+++|+.|++++.++++ ++|++|||+|..
T Consensus 57 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv~~ag~~ 97 (253)
T PRK05867 57 GGKVVPVCCDVSQHQQVTSMLDQVTAELGGIDIAVCNAGII 97 (253)
T ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 4467789999999999988775 789999999854
No 101
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=77.46 E-value=3.7 Score=40.03 Aligned_cols=43 Identities=21% Similarity=0.285 Sum_probs=34.6
Q ss_pred CHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecC
Q 018848 18 NEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVC 62 (349)
Q Consensus 18 d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~ 62 (349)
+.+.+.++++++|+||+|+..+.. . ..+-++|.+.++++|..+
T Consensus 215 ~~~~~~~~~~~~D~Vv~~~d~~~~-r-~~ln~~~~~~~ip~i~~~ 257 (376)
T PRK08762 215 TSDNVEALLQDVDVVVDGADNFPT-R-YLLNDACVKLGKPLVYGA 257 (376)
T ss_pred ChHHHHHHHhCCCEEEECCCCHHH-H-HHHHHHHHHcCCCEEEEE
Confidence 345678889999999999975442 2 468899999999999975
No 102
>PRK07326 short chain dehydrogenase; Provisional
Probab=77.37 E-value=2.9 Score=37.16 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=29.0
Q ss_pred CCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPFQ 40 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~~ 40 (349)
.++.++++|+.|.+++.++++ ++|+||||+|++.
T Consensus 54 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~ 94 (237)
T PRK07326 54 GNVLGLAADVRDEADVQRAVDAIVAAFGGLDVLIANAGVGH 94 (237)
T ss_pred CcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 457889999999999988876 7899999998654
No 103
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=77.36 E-value=2.1 Score=38.60 Aligned_cols=34 Identities=29% Similarity=0.507 Sum_probs=28.5
Q ss_pred cCCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 5 LGKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 5 l~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
++.++.++.+|+.|.+++.++++ ++|+|||++|-
T Consensus 44 ~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~ag~ 84 (248)
T PRK10538 44 LGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLVNNAGL 84 (248)
T ss_pred hccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 34567889999999999888775 79999999984
No 104
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=77.01 E-value=3.6 Score=37.77 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=23.7
Q ss_pred EEeCCCHHHHHHHhcCC--cEEEEccCCC
Q 018848 13 EVNIYNEGSLLMALRDV--DLVVHAAGPF 39 (349)
Q Consensus 13 ~~Dv~d~~~l~~~~~~~--dvVIn~agP~ 39 (349)
..|+.|++++.++++++ |+||||+++.
T Consensus 33 ~~d~~~~~~~~~~~~~~~~d~vi~~a~~~ 61 (287)
T TIGR01214 33 QLDLTDPEALERLLRAIRPDAVVNTAAYT 61 (287)
T ss_pred ccCCCCHHHHHHHHHhCCCCEEEECCccc
Confidence 46999999999999976 9999999853
No 105
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=76.96 E-value=2.7 Score=38.05 Aligned_cols=35 Identities=17% Similarity=0.443 Sum_probs=29.2
Q ss_pred cCCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 5 LGKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 5 l~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
.+.++.++++|+.|++++.++++ +.|++||++|-+
T Consensus 53 ~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~iD~lv~~ag~~ 94 (251)
T PRK12481 53 LGRKFHFITADLIQQKDIDSIVSQAVEVMGHIDILINNAGII 94 (251)
T ss_pred cCCeEEEEEeCCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 35567889999999999988876 579999999843
No 106
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=76.92 E-value=4.4 Score=34.97 Aligned_cols=42 Identities=19% Similarity=0.213 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHc-CCCeEecC
Q 018848 19 EGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIET-KTAYIDVC 62 (349)
Q Consensus 19 ~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~-Gv~YvDi~ 62 (349)
.+.+.++++++|+||+|..-+.. . ..+.+.|.+. ++++|--+
T Consensus 79 ~~~~~~~l~~~DlVi~~~d~~~~-r-~~i~~~~~~~~~ip~i~~~ 121 (174)
T cd01487 79 ENNLEGLFGDCDIVVEAFDNAET-K-AMLAESLLGNKNKPVVCAS 121 (174)
T ss_pred hhhHHHHhcCCCEEEECCCCHHH-H-HHHHHHHHHHCCCCEEEEe
Confidence 35678889999999999753332 1 2456666666 77766543
No 107
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=76.72 E-value=2.6 Score=40.23 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=28.1
Q ss_pred CCceEEEeCCCHHHHHHHhc--CCcEEEEccCCC
Q 018848 8 NSEFAEVNIYNEGSLLMALR--DVDLVVHAAGPF 39 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~--~~dvVIn~agP~ 39 (349)
+++++++|+.|.+++.++++ ++|.||||+++.
T Consensus 52 ~~~~~~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~ 85 (355)
T PRK10217 52 RFAFEKVDICDRAELARVFTEHQPDCVMHLAAES 85 (355)
T ss_pred ceEEEECCCcChHHHHHHHhhcCCCEEEECCccc
Confidence 46788999999999999998 489999999864
No 108
>PRK06139 short chain dehydrogenase; Provisional
Probab=76.72 E-value=3.1 Score=39.75 Aligned_cols=32 Identities=13% Similarity=0.233 Sum_probs=27.5
Q ss_pred CCCCceEEEeCCCHHHHHHHh-------cCCcEEEEccC
Q 018848 6 GKNSEFAEVNIYNEGSLLMAL-------RDVDLVVHAAG 37 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~-------~~~dvVIn~ag 37 (349)
+.++.++.+|+.|++++.+++ .+.|++|||+|
T Consensus 55 g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG 93 (330)
T PRK06139 55 GAEVLVVPTDVTDADQVKALATQAASFGGRIDVWVNNVG 93 (330)
T ss_pred CCcEEEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 556778899999999998887 36899999998
No 109
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=76.72 E-value=2.4 Score=38.30 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=28.0
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
+.++..+++|+.|.+++.++++ +.|++|||+|.
T Consensus 56 ~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~D~li~~Ag~ 95 (253)
T PRK08993 56 GRRFLSLTADLRKIDGIPALLERAVAEFGHIDILVNNAGL 95 (253)
T ss_pred CCeEEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 4457788999999999988886 58999999984
No 110
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.70 E-value=2.6 Score=37.57 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=29.0
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
+.++.++++|+.|++++.++++ ++|+||||+|+.
T Consensus 55 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 95 (239)
T PRK07666 55 GVKVVIATADVSDYEEVTAAIEQLKNELGSIDILINNAGIS 95 (239)
T ss_pred CCeEEEEECCCCCHHHHHHHHHHHHHHcCCccEEEEcCccc
Confidence 3467889999999999988886 789999999853
No 111
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=76.68 E-value=7.6 Score=35.10 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=26.7
Q ss_pred CCCceEEEeCCC-HHHHHHHh-cCCcEEEEccCC
Q 018848 7 KNSEFAEVNIYN-EGSLLMAL-RDVDLVVHAAGP 38 (349)
Q Consensus 7 ~~~~~~~~Dv~d-~~~l~~~~-~~~dvVIn~agP 38 (349)
.++++++.|+.| .+++.+.+ .++|+||+++|.
T Consensus 62 ~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~g~ 95 (251)
T PLN00141 62 PSLQIVRADVTEGSDKLVEAIGDDSDAVICATGF 95 (251)
T ss_pred CceEEEEeeCCCCHHHHHHHhhcCCCEEEECCCC
Confidence 358899999998 47787888 699999999874
No 112
>PLN02583 cinnamoyl-CoA reductase
Probab=76.57 E-value=5.9 Score=36.92 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=29.7
Q ss_pred CCCceEEEeCCCHHHHHHHhcCCcEEEEccCCCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALRDVDLVVHAAGPFQ 40 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~~ 40 (349)
.++++++.|+.|.+++.+.+.++|.|+++++|..
T Consensus 57 ~~~~~~~~Dl~d~~~~~~~l~~~d~v~~~~~~~~ 90 (297)
T PLN02583 57 ERLKVFDVDPLDYHSILDALKGCSGLFCCFDPPS 90 (297)
T ss_pred CceEEEEecCCCHHHHHHHHcCCCEEEEeCccCC
Confidence 3578899999999999999999999999887544
No 113
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=76.47 E-value=2.5 Score=38.41 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=29.0
Q ss_pred cCCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 5 LGKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 5 l~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
++.++.++++|+.|.+++.++++ +.|++||++|..
T Consensus 50 ~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~ag~~ 91 (263)
T PRK06200 50 FGDHVLVVEGDVTSYADNQRAVDQTVDAFGKLDCFVGNAGIW 91 (263)
T ss_pred hCCcceEEEccCCCHHHHHHHHHHHHHhcCCCCEEEECCCCc
Confidence 45567889999999998888765 579999999954
No 114
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=76.26 E-value=4.4 Score=38.96 Aligned_cols=55 Identities=20% Similarity=0.231 Sum_probs=39.8
Q ss_pred cCCCC--ceEEEeCCCHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecC
Q 018848 5 LGKNS--EFAEVNIYNEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVC 62 (349)
Q Consensus 5 l~~~~--~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~ 62 (349)
+++.+ +....|++ ++.+.++++++|+||+|+.-+.. . .-+.++|.+.|+++|..+
T Consensus 92 inp~v~v~~~~~~~~-~~~~~~~~~~~DlVid~~Dn~~~-r-~~ln~~~~~~~iP~i~~~ 148 (339)
T PRK07688 92 INSDVRVEAIVQDVT-AEELEELVTGVDLIIDATDNFET-R-FIVNDAAQKYGIPWIYGA 148 (339)
T ss_pred HCCCcEEEEEeccCC-HHHHHHHHcCCCEEEEcCCCHHH-H-HHHHHHHHHhCCCEEEEe
Confidence 34443 34444553 56678899999999999875432 2 578899999999999865
No 115
>PRK14852 hypothetical protein; Provisional
Probab=76.24 E-value=4.3 Score=44.21 Aligned_cols=59 Identities=17% Similarity=0.183 Sum_probs=43.2
Q ss_pred ccCCCCceEEEeC-CCHHHHHHHhcCCcEEEEccCCCC-CCCcHHHHHHHHHcCCCeEecCC
Q 018848 4 TLGKNSEFAEVNI-YNEGSLLMALRDVDLVVHAAGPFQ-QAPKCTVLEAAIETKTAYIDVCD 63 (349)
Q Consensus 4 ~l~~~~~~~~~Dv-~d~~~l~~~~~~~dvVIn~agP~~-~~~~~~v~~aci~~Gv~YvDi~~ 63 (349)
++++.++...++- -+++.+.++++++|+||+|..-|. ... ..+...|.+.|++.|..+.
T Consensus 397 ~INP~v~I~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~~~r-r~l~~~c~~~~IP~I~ag~ 457 (989)
T PRK14852 397 SVNPFLDIRSFPEGVAAETIDAFLKDVDLLVDGIDFFALDIR-RRLFNRALELGIPVITAGP 457 (989)
T ss_pred HHCCCCeEEEEecCCCHHHHHHHhhCCCEEEECCCCccHHHH-HHHHHHHHHcCCCEEEeec
Confidence 4566666666632 356778999999999999996432 122 2678899999999998654
No 116
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=76.19 E-value=5.3 Score=37.11 Aligned_cols=19 Identities=11% Similarity=0.156 Sum_probs=10.0
Q ss_pred HHHHHHHhc-CCcEEEEccC
Q 018848 19 EGSLLMALR-DVDLVVHAAG 37 (349)
Q Consensus 19 ~~~l~~~~~-~~dvVIn~ag 37 (349)
++.+.+++. ++|+||+|.+
T Consensus 111 ~e~~~~ll~~~~D~VIdaiD 130 (268)
T PRK15116 111 PDNVAEYMSAGFSYVIDAID 130 (268)
T ss_pred hhhHHHHhcCCCCEEEEcCC
Confidence 344444443 4666666655
No 117
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=76.15 E-value=3.8 Score=43.06 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=25.5
Q ss_pred CCceEEEeCCCHHH-HHHHhcCCcEEEEccC
Q 018848 8 NSEFAEVNIYNEGS-LLMALRDVDLVVHAAG 37 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~-l~~~~~~~dvVIn~ag 37 (349)
+++++..|+.|.++ +.++++++|+|||||+
T Consensus 361 ~~~~~~gDl~d~~~~l~~~l~~~D~ViHlAa 391 (660)
T PRK08125 361 RFHFVEGDISIHSEWIEYHIKKCDVVLPLVA 391 (660)
T ss_pred ceEEEeccccCcHHHHHHHhcCCCEEEECcc
Confidence 57888999998665 6778899999999996
No 118
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=76.12 E-value=3.9 Score=39.81 Aligned_cols=55 Identities=20% Similarity=0.178 Sum_probs=39.0
Q ss_pred cCCCCc--eEEEeCCCHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecC
Q 018848 5 LGKNSE--FAEVNIYNEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVC 62 (349)
Q Consensus 5 l~~~~~--~~~~Dv~d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~ 62 (349)
+.+.++ ...-.+ +++.+.++++++|+||+|+.-+.. . .-+-++|.+.|+++|..+
T Consensus 107 ~np~v~i~~~~~~i-~~~~~~~~~~~~DlVid~~Dn~~~-r-~~in~~~~~~~iP~v~~~ 163 (370)
T PRK05600 107 IQPDIRVNALRERL-TAENAVELLNGVDLVLDGSDSFAT-K-FLVADAAEITGTPLVWGT 163 (370)
T ss_pred HCCCCeeEEeeeec-CHHHHHHHHhCCCEEEECCCCHHH-H-HHHHHHHHHcCCCEEEEE
Confidence 344443 333333 355678899999999999975443 2 467799999999999865
No 119
>PRK08267 short chain dehydrogenase; Provisional
Probab=76.09 E-value=2.3 Score=38.46 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=27.3
Q ss_pred CCCceEEEeCCCHHHHHHHhc--------CCcEEEEccCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALR--------DVDLVVHAAGP 38 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~--------~~dvVIn~agP 38 (349)
.++.++++|+.|.+++.++++ +.|+||||+|.
T Consensus 48 ~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~vi~~ag~ 87 (260)
T PRK08267 48 GNAWTGALDVTDRAAWDAALADFAAATGGRLDVLFNNAGI 87 (260)
T ss_pred CceEEEEecCCCHHHHHHHHHHHHHHcCCCCCEEEECCCC
Confidence 468899999999999988766 45999999984
No 120
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=75.95 E-value=2 Score=39.73 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=27.5
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAG 37 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~ag 37 (349)
+-.++.+.+|+.|++++.++.. .+|+.||+||
T Consensus 55 ~v~v~vi~~DLs~~~~~~~l~~~l~~~~~~IdvLVNNAG 93 (265)
T COG0300 55 GVEVEVIPADLSDPEALERLEDELKERGGPIDVLVNNAG 93 (265)
T ss_pred CceEEEEECcCCChhHHHHHHHHHHhcCCcccEEEECCC
Confidence 3457899999999999888775 6999999998
No 121
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=75.87 E-value=4.3 Score=39.83 Aligned_cols=55 Identities=15% Similarity=0.195 Sum_probs=38.4
Q ss_pred cCCCCceE--EEeCCCHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecC
Q 018848 5 LGKNSEFA--EVNIYNEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVC 62 (349)
Q Consensus 5 l~~~~~~~--~~Dv~d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~ 62 (349)
+.+.++.. .-.++ .+.+.++++++|+||+|..-+.. . .-+-++|.+.|+++|..+
T Consensus 108 ~np~v~i~~~~~~i~-~~~~~~~~~~~D~Vvd~~d~~~~-r-~~ln~~~~~~~~p~v~~~ 164 (392)
T PRK07878 108 INPLVNVRLHEFRLD-PSNAVELFSQYDLILDGTDNFAT-R-YLVNDAAVLAGKPYVWGS 164 (392)
T ss_pred hCCCcEEEEEeccCC-hhHHHHHHhcCCEEEECCCCHHH-H-HHHHHHHHHcCCCEEEEE
Confidence 34444443 33333 45577899999999999865432 2 467899999999999864
No 122
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=75.50 E-value=3.7 Score=39.50 Aligned_cols=51 Identities=14% Similarity=0.149 Sum_probs=38.9
Q ss_pred CceEEEeCCCHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecC
Q 018848 9 SEFAEVNIYNEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVC 62 (349)
Q Consensus 9 ~~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~ 62 (349)
++.+..|++ ++.+.++++++|+||+|+..+.. . .-+-+.|.+.|+++|..+
T Consensus 98 i~~~~~~~~-~~~~~~~~~~~DlVid~~D~~~~-r-~~in~~~~~~~ip~i~~~ 148 (338)
T PRK12475 98 IVPVVTDVT-VEELEELVKEVDLIIDATDNFDT-R-LLINDLSQKYNIPWIYGG 148 (338)
T ss_pred EEEEeccCC-HHHHHHHhcCCCEEEEcCCCHHH-H-HHHHHHHHHcCCCEEEEE
Confidence 344555654 45788899999999999976553 2 467789999999999865
No 123
>PRK08643 acetoin reductase; Validated
Probab=75.24 E-value=3.3 Score=37.30 Aligned_cols=34 Identities=24% Similarity=0.444 Sum_probs=28.0
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
+.++.++++|+.|++++.++++ +.|+||||+|..
T Consensus 50 ~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 90 (256)
T PRK08643 50 GGKAIAVKADVSDRDQVFAAVRQVVDTFGDLNVVVNNAGVA 90 (256)
T ss_pred CCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 3457789999999998888776 579999999853
No 124
>PRK12937 short chain dehydrogenase; Provisional
Probab=75.11 E-value=2.9 Score=37.25 Aligned_cols=33 Identities=15% Similarity=0.331 Sum_probs=28.2
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
+.++.++++|+.|++++.++++ +.|+|||++|-
T Consensus 54 ~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 93 (245)
T PRK12937 54 GGRAIAVQADVADAAAVTRLFDAAETAFGRIDVLVNNAGV 93 (245)
T ss_pred CCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 4467889999999999988877 68999999984
No 125
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.10 E-value=2.9 Score=38.67 Aligned_cols=33 Identities=18% Similarity=0.339 Sum_probs=26.5
Q ss_pred cCCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 5 LGKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 5 l~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
++.+ .++++|+.|.+++.++++ +.|++||++|-
T Consensus 54 ~~~~-~~~~~Dv~d~~~v~~~~~~i~~~~g~iDilVnnAG~ 93 (274)
T PRK08415 54 LGSD-YVYELDVSKPEHFKSLAESLKKDLGKIDFIVHSVAF 93 (274)
T ss_pred cCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 3434 578999999999888765 57999999983
No 126
>PRK06138 short chain dehydrogenase; Provisional
Probab=75.06 E-value=3.2 Score=37.19 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=28.1
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
+.++..+++|+.|++++.++++ ++|+||||+|.
T Consensus 52 ~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~vi~~ag~ 91 (252)
T PRK06138 52 GGRAFARQGDVGSAEAVEALVDFVAARWGRLDVLVNNAGF 91 (252)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 3457889999999999988775 78999999984
No 127
>PRK06482 short chain dehydrogenase; Provisional
Probab=74.95 E-value=2.2 Score=39.04 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=28.5
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
+.++.++++|+.|.+++.++++ ++|+||||+|..
T Consensus 47 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 87 (276)
T PRK06482 47 GDRLWVLQLDVTDSAAVRAVVDRAFAALGRIDVVVSNAGYG 87 (276)
T ss_pred cCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 4568899999999999988765 479999999854
No 128
>PRK09186 flagellin modification protein A; Provisional
Probab=74.90 E-value=3 Score=37.50 Aligned_cols=32 Identities=28% Similarity=0.299 Sum_probs=26.6
Q ss_pred CCceEEEeCCCHHHHHHHhcC-------CcEEEEccCCC
Q 018848 8 NSEFAEVNIYNEGSLLMALRD-------VDLVVHAAGPF 39 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~~-------~dvVIn~agP~ 39 (349)
.+.++++|+.|++++.+++++ .|+||||+++.
T Consensus 56 ~~~~~~~Dl~d~~~~~~~~~~~~~~~~~id~vi~~A~~~ 94 (256)
T PRK09186 56 KLSLVELDITDQESLEEFLSKSAEKYGKIDGAVNCAYPR 94 (256)
T ss_pred ceeEEEecCCCHHHHHHHHHHHHHHcCCccEEEECCccc
Confidence 356779999999999888874 79999999753
No 129
>PRK07454 short chain dehydrogenase; Provisional
Probab=74.85 E-value=3 Score=37.19 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=28.4
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
+.++.++++|++|.+++.++++ ++|+||||+|.+
T Consensus 54 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag~~ 94 (241)
T PRK07454 54 GVKAAAYSIDLSNPEAIAPGIAELLEQFGCPDVLINNAGMA 94 (241)
T ss_pred CCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCcc
Confidence 4567889999999999888776 589999999854
No 130
>PRK12320 hypothetical protein; Provisional
Probab=74.82 E-value=6.1 Score=41.79 Aligned_cols=55 Identities=20% Similarity=0.139 Sum_probs=37.3
Q ss_pred CCCceEEEeCCCHHHHHHHhcCCcEEEEccCCCCCC-------CcHHHHHHHHHcCCCeEecC
Q 018848 7 KNSEFAEVNIYNEGSLLMALRDVDLVVHAAGPFQQA-------PKCTVLEAAIETKTAYIDVC 62 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~~~~-------~~~~v~~aci~~Gv~YvDi~ 62 (349)
.++++++.|+.|+. +.++++++|+||||+++.... +-..++++|.++|+..|=+|
T Consensus 40 ~~ve~v~~Dl~d~~-l~~al~~~D~VIHLAa~~~~~~~~vNv~Gt~nLleAA~~~GvRiV~~S 101 (699)
T PRK12320 40 PRVDYVCASLRNPV-LQELAGEADAVIHLAPVDTSAPGGVGITGLAHVANAAARAGARLLFVS 101 (699)
T ss_pred CCceEEEccCCCHH-HHHHhcCCCEEEEcCccCccchhhHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 35789999999985 788889999999999743210 00135566666665555433
No 131
>PRK07411 hypothetical protein; Validated
Probab=74.75 E-value=4.8 Score=39.50 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=39.2
Q ss_pred cCCCCceEEEe--CCCHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecC
Q 018848 5 LGKNSEFAEVN--IYNEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVC 62 (349)
Q Consensus 5 l~~~~~~~~~D--v~d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~ 62 (349)
+.+.++....+ ++ ++...++++++|+||+|...+... .-+-++|.+.++++|..+
T Consensus 104 ~np~v~v~~~~~~~~-~~~~~~~~~~~D~Vvd~~d~~~~r--~~ln~~~~~~~~p~v~~~ 160 (390)
T PRK07411 104 INPYCQVDLYETRLS-SENALDILAPYDVVVDGTDNFPTR--YLVNDACVLLNKPNVYGS 160 (390)
T ss_pred HCCCCeEEEEecccC-HHhHHHHHhCCCEEEECCCCHHHH--HHHHHHHHHcCCCEEEEE
Confidence 34444444333 33 345678899999999999866432 578899999999999754
No 132
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=74.68 E-value=3.8 Score=36.38 Aligned_cols=34 Identities=12% Similarity=0.365 Sum_probs=27.3
Q ss_pred CCCceEEEeCCCHHHHHHHhc---CCcEEEEccCCCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALR---DVDLVVHAAGPFQ 40 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~---~~dvVIn~agP~~ 40 (349)
.++.++++|+.|.++++++.+ +.|+||||+|...
T Consensus 43 ~~~~~~~~Dls~~~~~~~~~~~~~~id~li~~aG~~~ 79 (235)
T PRK09009 43 DNVQWHALDVTDEAEIKQLSEQFTQLDWLINCVGMLH 79 (235)
T ss_pred CceEEEEecCCCHHHHHHHHHhcCCCCEEEECCcccc
Confidence 457789999999998777544 7899999999543
No 133
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=74.65 E-value=3.3 Score=39.59 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=29.6
Q ss_pred CCCceEEEeCCCHHHHHHHhcCCcEEEEccCCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALRDVDLVVHAAGPF 39 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~ 39 (349)
.+++++..|+.|.+++.++++++|.|||++++.
T Consensus 58 ~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A~~~ 90 (353)
T PLN02896 58 DRLRLFRADLQEEGSFDEAVKGCDGVFHVAASM 90 (353)
T ss_pred CeEEEEECCCCCHHHHHHHHcCCCEEEECCccc
Confidence 457889999999999999999999999999853
No 134
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=74.61 E-value=3.6 Score=37.25 Aligned_cols=34 Identities=24% Similarity=0.516 Sum_probs=29.2
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
+.++.++++|+.|.+++.++++ +.|++|||+|..
T Consensus 62 ~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~id~li~~ag~~ 102 (258)
T PRK06935 62 GRKVTFVQVDLTKPESAEKVVKEALEEFGKIDILVNNAGTI 102 (258)
T ss_pred CCceEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 4568899999999999998887 679999999853
No 135
>PRK09134 short chain dehydrogenase; Provisional
Probab=74.48 E-value=3.1 Score=37.69 Aligned_cols=34 Identities=18% Similarity=0.347 Sum_probs=28.3
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
+.++.++++|+.|.+++.++++ +.|+||||+|..
T Consensus 58 ~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~iD~vi~~ag~~ 98 (258)
T PRK09134 58 GRRAVALQADLADEAEVRALVARASAALGPITLLVNNASLF 98 (258)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCcCC
Confidence 4567889999999999988775 479999999854
No 136
>PLN02650 dihydroflavonol-4-reductase
Probab=74.43 E-value=3.3 Score=39.52 Aligned_cols=32 Identities=28% Similarity=0.330 Sum_probs=28.9
Q ss_pred CCceEEEeCCCHHHHHHHhcCCcEEEEccCCC
Q 018848 8 NSEFAEVNIYNEGSLLMALRDVDLVVHAAGPF 39 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~ 39 (349)
+++++..|+.|.+.+.++++++|.||||+++.
T Consensus 57 ~~~~v~~Dl~d~~~~~~~~~~~d~ViH~A~~~ 88 (351)
T PLN02650 57 RLTLWKADLAVEGSFDDAIRGCTGVFHVATPM 88 (351)
T ss_pred ceEEEEecCCChhhHHHHHhCCCEEEEeCCCC
Confidence 46789999999999999999999999999753
No 137
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=74.37 E-value=5.6 Score=35.51 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=31.4
Q ss_pred HHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHc-CCCeEecCC
Q 018848 19 EGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIET-KTAYIDVCD 63 (349)
Q Consensus 19 ~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~-Gv~YvDi~~ 63 (349)
.+.+.++++++|+||+|+..+.. . ..+.+.|.+. ++++|-.++
T Consensus 108 ~~~~~~~~~~~DvVI~a~D~~~~-r-~~l~~~~~~~~~~p~I~~~~ 151 (212)
T PRK08644 108 EDNIEELFKDCDIVVEAFDNAET-K-AMLVETVLEHPGKKLVAASG 151 (212)
T ss_pred HHHHHHHHcCCCEEEECCCCHHH-H-HHHHHHHHHhCCCCEEEeeh
Confidence 35567889999999999864432 2 3677888888 888887543
No 138
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=74.29 E-value=12 Score=30.25 Aligned_cols=76 Identities=22% Similarity=0.240 Sum_probs=48.8
Q ss_pred CceEEEeCCCHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEec
Q 018848 9 SEFAEVNIYNEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITT 88 (349)
Q Consensus 9 ~~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~ 88 (349)
+++...+..+.+++.+.++++|++|-..++..+ ..+++.| -+..+|-..+.- + +.+ . -+.+++.|+.+-..
T Consensus 19 ~~v~~~~~~~~~~~~~~l~~~d~ii~~~~~~~~---~~~l~~~--~~Lk~I~~~~~G-~-d~i-d-~~~a~~~gI~V~n~ 89 (133)
T PF00389_consen 19 FEVEFCDSPSEEELAERLKDADAIIVGSGTPLT---AEVLEAA--PNLKLISTAGAG-V-DNI-D-LEAAKERGIPVTNV 89 (133)
T ss_dssp SEEEEESSSSHHHHHHHHTTESEEEESTTSTBS---HHHHHHH--TT-SEEEESSSS-C-TTB---HHHHHHTTSEEEE-
T ss_pred ceEEEeCCCCHHHHHHHhCCCeEEEEcCCCCcC---HHHHhcc--ceeEEEEEcccc-c-Ccc-c-HHHHhhCeEEEEEe
Confidence 467777888899999999999999976555232 4888887 455555544321 0 001 1 13477899987777
Q ss_pred CCcCc
Q 018848 89 GGIYP 93 (349)
Q Consensus 89 ~G~~P 93 (349)
-|..+
T Consensus 90 ~g~~~ 94 (133)
T PF00389_consen 90 PGYNA 94 (133)
T ss_dssp TTTTH
T ss_pred CCcCC
Confidence 76554
No 139
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=74.03 E-value=31 Score=35.07 Aligned_cols=79 Identities=9% Similarity=0.019 Sum_probs=37.1
Q ss_pred eEEEeCCCHHHHHHHhc-CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCCh-hHHHHHHHHHHHHHHcCC-cEEe
Q 018848 11 FAEVNIYNEGSLLMALR-DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDT-IYSQRAKSFKDRAIAANI-PAIT 87 (349)
Q Consensus 11 ~~~~Dv~d~~~l~~~~~-~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~-~~~~~~~~l~~~a~~~g~-~~v~ 87 (349)
.+.+|-.+++.+.+.++ |+|+|-+..+ . + . ..++..|.+.|+.+|=+..+. +-.+.+.+.-+.++++|+ .++.
T Consensus 210 pISIDT~~~~v~eaAL~aGAdiINsVs~-~-~-~-d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~~Gi~~IIl 285 (499)
T TIGR00284 210 PVIADTPTLDELYEALKAGASGVIMPDV-E-N-A-VELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLRTSGYSKVAA 285 (499)
T ss_pred cEEEeCCCHHHHHHHHHcCCCEEEECCc-c-c-h-hHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHHCCCCcEEE
Confidence 35556666666555554 5554444333 1 1 1 144455555566655554321 111222233444555565 5555
Q ss_pred cCCcCc
Q 018848 88 TGGIYP 93 (349)
Q Consensus 88 ~~G~~P 93 (349)
.-|+.|
T Consensus 286 DPglg~ 291 (499)
T TIGR00284 286 DPSLSP 291 (499)
T ss_pred eCCCCc
Confidence 555554
No 140
>PRK08219 short chain dehydrogenase; Provisional
Probab=73.96 E-value=4.1 Score=35.76 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=28.3
Q ss_pred CCceEEEeCCCHHHHHHHhc---CCcEEEEccCCC
Q 018848 8 NSEFAEVNIYNEGSLLMALR---DVDLVVHAAGPF 39 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~---~~dvVIn~agP~ 39 (349)
++++++.|+.|++++.++++ ++|.||+|+|..
T Consensus 48 ~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~~ 82 (227)
T PRK08219 48 GATPFPVDLTDPEAIAAAVEQLGRLDVLVHNAGVA 82 (227)
T ss_pred cceEEecCCCCHHHHHHHHHhcCCCCEEEECCCcC
Confidence 47889999999999999887 589999999853
No 141
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=73.95 E-value=2.7 Score=38.28 Aligned_cols=31 Identities=10% Similarity=0.196 Sum_probs=26.6
Q ss_pred CCCceEEEeCCCHHHHHHHhc-------CCcEEEEccC
Q 018848 7 KNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAG 37 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~ag 37 (349)
.++.++++|+.|++++.++++ +.|++|||+|
T Consensus 59 ~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ld~lv~nag 96 (257)
T PRK08594 59 QESLLLPCDVTSDEEITACFETIKEEVGVIHGVAHCIA 96 (257)
T ss_pred CceEEEecCCCCHHHHHHHHHHHHHhCCCccEEEECcc
Confidence 457789999999999888775 5799999998
No 142
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=73.93 E-value=2.8 Score=37.76 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=28.1
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
+.++.++++|+.|.+++.+++. ++|+||+|+|..
T Consensus 55 ~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 95 (262)
T PRK13394 55 GGKAIGVAMDVTNEDAVNAGIDKVAERFGSVDILVSNAGIQ 95 (262)
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCccC
Confidence 4457789999999999988776 389999999854
No 143
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=73.90 E-value=3.4 Score=38.70 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=29.7
Q ss_pred CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCC
Q 018848 28 DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDD 64 (349)
Q Consensus 28 ~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~ 64 (349)
+.|+|+.|++++.+ ...+..|+++|+|.+|.+.-
T Consensus 64 dIDaV~iaTp~~~H---~e~a~~al~aGk~VIdekPa 97 (285)
T TIGR03215 64 DIDIVFDATSAKAH---ARHARLLAELGKIVIDLTPA 97 (285)
T ss_pred CCCEEEECCCcHHH---HHHHHHHHHcCCEEEECCcc
Confidence 78999999987665 58999999999999998854
No 144
>PRK12367 short chain dehydrogenase; Provisional
Probab=73.82 E-value=4.1 Score=37.00 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=26.5
Q ss_pred ceEEEeCCCHHHHHHHhcCCcEEEEccCC
Q 018848 10 EFAEVNIYNEGSLLMALRDVDLVVHAAGP 38 (349)
Q Consensus 10 ~~~~~Dv~d~~~l~~~~~~~dvVIn~agP 38 (349)
..+++|+.|.+++.+.+.+.|++|||+|-
T Consensus 61 ~~~~~D~~~~~~~~~~~~~iDilVnnAG~ 89 (245)
T PRK12367 61 EWIKWECGKEESLDKQLASLDVLILNHGI 89 (245)
T ss_pred eEEEeeCCCHHHHHHhcCCCCEEEECCcc
Confidence 57889999999999999999999999983
No 145
>PRK07856 short chain dehydrogenase; Provisional
Probab=73.75 E-value=2.7 Score=37.92 Aligned_cols=32 Identities=19% Similarity=0.418 Sum_probs=27.3
Q ss_pred CCCceEEEeCCCHHHHHHHhcC-------CcEEEEccCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALRD-------VDLVVHAAGP 38 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~~-------~dvVIn~agP 38 (349)
.++.++++|+.|++++.++++. .|+||||+|.
T Consensus 47 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 85 (252)
T PRK07856 47 RPAEFHAADVRDPDQVAALVDAIVERHGRLDVLVNNAGG 85 (252)
T ss_pred CceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 4578899999999999888764 5999999984
No 146
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=73.73 E-value=8.4 Score=36.12 Aligned_cols=18 Identities=17% Similarity=0.366 Sum_probs=15.0
Q ss_pred HHHHHHhcCCcEEEEccC
Q 018848 20 GSLLMALRDVDLVVHAAG 37 (349)
Q Consensus 20 ~~l~~~~~~~dvVIn~ag 37 (349)
+++.+.++++|+||||++
T Consensus 201 ~~l~~~l~~aDiVint~P 218 (287)
T TIGR02853 201 NKLEEKVAEIDIVINTIP 218 (287)
T ss_pred HHHHHHhccCCEEEECCC
Confidence 456788899999999983
No 147
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=73.58 E-value=2.3 Score=39.86 Aligned_cols=74 Identities=18% Similarity=0.123 Sum_probs=46.8
Q ss_pred HHHHhcCCcEEEEcc--CCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchhHHH
Q 018848 22 LLMALRDVDLVVHAA--GPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVSNVM 99 (349)
Q Consensus 22 l~~~~~~~dvVIn~a--gP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls~ll 99 (349)
+.+.++++|+||||+ |-.-... .++-...++.+.-.+|+...+.- ..+-..|+++|..++.|. +||
T Consensus 186 ~~~~~~~aDiVInaTp~Gm~~~~~-~~~~~~~l~~~~~v~DivY~P~~----T~ll~~A~~~G~~~~~G~-------~ML 253 (284)
T PRK12549 186 LAAALAAADGLVHATPTGMAKHPG-LPLPAELLRPGLWVADIVYFPLE----TELLRAARALGCRTLDGG-------GMA 253 (284)
T ss_pred hHhhhCCCCEEEECCcCCCCCCCC-CCCCHHHcCCCcEEEEeeeCCCC----CHHHHHHHHCCCeEecCH-------HHH
Confidence 445677899999995 3211111 13333456777788899865421 145566889998866554 577
Q ss_pred HHHHHHHH
Q 018848 100 AAELVRVA 107 (349)
Q Consensus 100 a~~~~~~l 107 (349)
...++.++
T Consensus 254 ~~Qa~~~f 261 (284)
T PRK12549 254 VFQAVDAF 261 (284)
T ss_pred HHHHHHHH
Confidence 77777653
No 148
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=73.56 E-value=3.6 Score=36.91 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=28.7
Q ss_pred CCCCceEEEeCCCHHHHHHHhcC-------CcEEEEccCCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALRD-------VDLVVHAAGPF 39 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~~-------~dvVIn~agP~ 39 (349)
+.++.++++|+.|++++.+++++ .|+||||+|..
T Consensus 47 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 87 (252)
T PRK08220 47 DYPFATFVLDVSDAAAVAQVCQRLLAETGPLDVLVNAAGIL 87 (252)
T ss_pred CCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 44678899999999999998864 79999999853
No 149
>PRK07109 short chain dehydrogenase; Provisional
Probab=73.46 E-value=3.6 Score=39.23 Aligned_cols=33 Identities=15% Similarity=0.116 Sum_probs=28.3
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
+.++.++++|+.|++++.++++ +.|++||++|.
T Consensus 56 g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 56 GGEALAVVADVADAEAVQAAADRAEEELGPIDTWVNNAMV 95 (334)
T ss_pred CCcEEEEEecCCCHHHHHHHHHHHHHHCCCCCEEEECCCc
Confidence 5567889999999999988765 68999999984
No 150
>PRK07478 short chain dehydrogenase; Provisional
Probab=73.40 E-value=3.7 Score=36.97 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=28.1
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
+.++.++.+|+.|++++.++++ +.|++||++|.
T Consensus 54 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ag~ 93 (254)
T PRK07478 54 GGEAVALAGDVRDEAYAKALVALAVERFGGLDIAFNNAGT 93 (254)
T ss_pred CCcEEEEEcCCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 4467789999999999888876 68999999984
No 151
>PRK08628 short chain dehydrogenase; Provisional
Probab=73.24 E-value=3.7 Score=37.02 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=28.4
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
+.++.++.+|+.|++++.++++ +.|+||||+|-
T Consensus 54 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 93 (258)
T PRK08628 54 QPRAEFVQVDLTDDAQCRDAVEQTVAKFGRIDGLVNNAGV 93 (258)
T ss_pred CCceEEEEccCCCHHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence 4568899999999999988776 57999999983
No 152
>PRK06123 short chain dehydrogenase; Provisional
Probab=73.24 E-value=4.3 Score=36.27 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=28.4
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
+.++.++++|+.|.+++.++++ +.|+||||+|..
T Consensus 51 ~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~ag~~ 91 (248)
T PRK06123 51 GGEALAVAADVADEADVLRLFEAVDRELGRLDALVNNAGIL 91 (248)
T ss_pred CCcEEEEEeccCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 3456789999999999998886 579999999853
No 153
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=73.19 E-value=4.1 Score=38.79 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=27.8
Q ss_pred CCceEEEeCCCHHHHHHHhc--CCcEEEEccCCC
Q 018848 8 NSEFAEVNIYNEGSLLMALR--DVDLVVHAAGPF 39 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~--~~dvVIn~agP~ 39 (349)
+++++..|+.|.+++.++++ ++|+||||++..
T Consensus 51 ~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~ 84 (352)
T PRK10084 51 RYVFEHADICDRAELDRIFAQHQPDAVMHLAAES 84 (352)
T ss_pred ceEEEEecCCCHHHHHHHHHhcCCCEEEECCccc
Confidence 46778999999999999997 489999999854
No 154
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=72.98 E-value=6.9 Score=36.82 Aligned_cols=42 Identities=10% Similarity=0.217 Sum_probs=24.4
Q ss_pred HHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCC
Q 018848 20 GSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDD 64 (349)
Q Consensus 20 ~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~ 64 (349)
+++.+.++++|+||||+++... . .-+-..++.|.-.||++.+
T Consensus 202 ~~l~~~l~~aDiVI~t~p~~~i-~--~~~l~~~~~g~vIIDla~~ 243 (296)
T PRK08306 202 SELAEEVGKIDIIFNTIPALVL-T--KEVLSKMPPEALIIDLASK 243 (296)
T ss_pred HHHHHHhCCCCEEEECCChhhh-h--HHHHHcCCCCcEEEEEccC
Confidence 4567888999999999853211 1 1112233445556665543
No 155
>PRK06181 short chain dehydrogenase; Provisional
Probab=72.93 E-value=4.3 Score=36.73 Aligned_cols=35 Identities=14% Similarity=0.252 Sum_probs=29.2
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPFQ 40 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~~ 40 (349)
+.++.+..+|+.|.+++.++++ +.|+||||+|+..
T Consensus 49 ~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~ 90 (263)
T PRK06181 49 GGEALVVPTDVSDAEACERLIEAAVARFGGIDILVNNAGITM 90 (263)
T ss_pred CCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCccc
Confidence 4467788999999999888876 6799999998644
No 156
>PRK05884 short chain dehydrogenase; Provisional
Probab=72.83 E-value=4.1 Score=36.21 Aligned_cols=31 Identities=19% Similarity=0.174 Sum_probs=26.8
Q ss_pred CceEEEeCCCHHHHHHHhc----CCcEEEEccCCC
Q 018848 9 SEFAEVNIYNEGSLLMALR----DVDLVVHAAGPF 39 (349)
Q Consensus 9 ~~~~~~Dv~d~~~l~~~~~----~~dvVIn~agP~ 39 (349)
++++++|+.|++++.++++ +.|++||++|+.
T Consensus 46 ~~~~~~D~~~~~~v~~~~~~~~~~id~lv~~ag~~ 80 (223)
T PRK05884 46 VDAIVCDNTDPASLEEARGLFPHHLDTIVNVPAPS 80 (223)
T ss_pred CcEEecCCCCHHHHHHHHHHHhhcCcEEEECCCcc
Confidence 6788999999999988876 589999999864
No 157
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=72.80 E-value=3.3 Score=39.05 Aligned_cols=33 Identities=12% Similarity=0.177 Sum_probs=28.1
Q ss_pred CCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
.++.++++|+.|.++++++++ +.|+|||++|.+
T Consensus 55 ~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~iD~li~nAg~~ 94 (322)
T PRK07453 55 DSYTIIHIDLGDLDSVRRFVDDFRALGKPLDALVCNAAVY 94 (322)
T ss_pred CceEEEEecCCCHHHHHHHHHHHHHhCCCccEEEECCccc
Confidence 457889999999999988886 389999999853
No 158
>PLN00016 RNA-binding protein; Provisional
Probab=72.80 E-value=3 Score=40.44 Aligned_cols=54 Identities=13% Similarity=-0.028 Sum_probs=38.0
Q ss_pred CCceEEEeCCCHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCC-CeEecCC
Q 018848 8 NSEFAEVNIYNEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKT-AYIDVCD 63 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv-~YvDi~~ 63 (349)
.+++++.|+.|.+++. ...++|+||++++...... .+++++|.++|+ ++|=++.
T Consensus 111 ~v~~v~~D~~d~~~~~-~~~~~d~Vi~~~~~~~~~~-~~ll~aa~~~gvkr~V~~SS 165 (378)
T PLN00016 111 GVKTVWGDPADVKSKV-AGAGFDVVYDNNGKDLDEV-EPVADWAKSPGLKQFLFCSS 165 (378)
T ss_pred CceEEEecHHHHHhhh-ccCCccEEEeCCCCCHHHH-HHHHHHHHHcCCCEEEEEcc
Confidence 4788889987733322 1248999999987544333 388999999998 6776654
No 159
>PRK12939 short chain dehydrogenase; Provisional
Probab=72.77 E-value=4.3 Score=36.20 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=27.9
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
+.++++.++|+.|++++.+++. ++|+||||+|.
T Consensus 55 ~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 55 GGRAHAIAADLADPASVQRFFDAAAAALGGLDGLVNNAGI 94 (250)
T ss_pred CCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 3467889999999999988774 68999999984
No 160
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=72.64 E-value=4.8 Score=38.69 Aligned_cols=52 Identities=15% Similarity=0.177 Sum_probs=39.5
Q ss_pred ceEEEeCCCHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCC
Q 018848 10 EFAEVNIYNEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDD 64 (349)
Q Consensus 10 ~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~ 64 (349)
+....+..|++.+.=--.++|+|+.|+|.|.. ...+...+++|+..||++..
T Consensus 77 ~i~v~~~~~p~~~~w~~~gvDiVie~tG~~~s---~~~a~~hl~aGak~ViiSap 128 (338)
T PLN02358 77 PVTVFGIRNPEDIPWGEAGADFVVESTGVFTD---KDKAAAHLKGGAKKVVISAP 128 (338)
T ss_pred EEEEEEcCCcccCcccccCCCEEEEcccchhh---HHHHHHHHHCCCEEEEeCCC
Confidence 45555666666553212499999999998876 47899999999999999953
No 161
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=72.53 E-value=10 Score=35.65 Aligned_cols=31 Identities=42% Similarity=0.562 Sum_probs=27.0
Q ss_pred CCCceEEEeCCCHHHHHHHhc--CCcEEEEccC
Q 018848 7 KNSEFAEVNIYNEGSLLMALR--DVDLVVHAAG 37 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~--~~dvVIn~ag 37 (349)
.+++++..|+.|.+++.++++ ++|+|||+++
T Consensus 50 ~~~~~~~~Dl~d~~~~~~~~~~~~~d~vvh~a~ 82 (338)
T PRK10675 50 KHPTFVEGDIRNEALLTEILHDHAIDTVIHFAG 82 (338)
T ss_pred CCceEEEccCCCHHHHHHHHhcCCCCEEEECCc
Confidence 346788999999999999887 6899999997
No 162
>PRK06114 short chain dehydrogenase; Provisional
Probab=72.43 E-value=2.8 Score=37.86 Aligned_cols=34 Identities=24% Similarity=0.321 Sum_probs=28.0
Q ss_pred CCCCceEEEeCCCHHHHHHHhcC-------CcEEEEccCCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALRD-------VDLVVHAAGPF 39 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~~-------~dvVIn~agP~ 39 (349)
+.++..+++|+.|++++.++++. .|+||||+|..
T Consensus 57 ~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~id~li~~ag~~ 97 (254)
T PRK06114 57 GRRAIQIAADVTSKADLRAAVARTEAELGALTLAVNAAGIA 97 (254)
T ss_pred CCceEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 44677899999999999887763 59999999853
No 163
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=72.09 E-value=10 Score=36.43 Aligned_cols=85 Identities=19% Similarity=0.294 Sum_probs=57.1
Q ss_pred EeCCCHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHH-------------------HHH-H-
Q 018848 14 VNIYNEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYS-------------------QRA-K- 72 (349)
Q Consensus 14 ~Dv~d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~-------------------~~~-~- 72 (349)
+..-|++.+ ..++||+|+-|+. +... ..++..-++.|+..||+|++..+. +++ .
T Consensus 58 ~~~~~~~~~--~~~~~DvvFlalP--hg~s-~~~v~~l~~~g~~VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYG 132 (349)
T COG0002 58 FQTIDPEKI--ELDECDVVFLALP--HGVS-AELVPELLEAGCKVIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYG 132 (349)
T ss_pred cccCChhhh--hcccCCEEEEecC--chhH-HHHHHHHHhCCCeEEECCcccccCCHHHHHHhhCCCCCCchhhhccccc
Confidence 344444544 4567999999995 4445 589999999999999999976432 111 1
Q ss_pred --HHH-HHHHHcCCcEEecCCcCcchhHHHHHHHHH
Q 018848 73 --SFK-DRAIAANIPAITTGGIYPGVSNVMAAELVR 105 (349)
Q Consensus 73 --~l~-~~a~~~g~~~v~~~G~~PGls~lla~~~~~ 105 (349)
+++ ++. ++...|-.-|..|--+-+..+=+.+
T Consensus 133 LpEl~~e~i--~~A~lIAnPGCypTa~iLal~PL~~ 166 (349)
T COG0002 133 LPELHREKI--RGAKLIANPGCYPTAAILALAPLVK 166 (349)
T ss_pred CcccCHHHH--hcCCEeeCCCchHHHHHHHHHHHHH
Confidence 233 223 3455777778888877777776665
No 164
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=72.09 E-value=2.6 Score=37.79 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=28.2
Q ss_pred cCCCCceEEEeCCCHHHHHHHhcC--------CcEEEEccCC
Q 018848 5 LGKNSEFAEVNIYNEGSLLMALRD--------VDLVVHAAGP 38 (349)
Q Consensus 5 l~~~~~~~~~Dv~d~~~l~~~~~~--------~dvVIn~agP 38 (349)
++.++.++++|+.|++++.++++. +|+|||++|-
T Consensus 50 ~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~id~li~~ag~ 91 (253)
T PRK08642 50 LGDRAIALQADVTDREQVQAMFATATEHFGKPITTVVNNALA 91 (253)
T ss_pred hCCceEEEEcCCCCHHHHHHHHHHHHHHhCCCCeEEEECCCc
Confidence 344678899999999999888763 8999999974
No 165
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=72.03 E-value=4.3 Score=36.85 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=27.8
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
+.++.++++|+.|++++.+++. +.|++||++|.
T Consensus 58 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv~nAg~ 97 (260)
T PRK08416 58 GIKAKAYPLNILEPETYKELFKKIDEDFDRVDFFISNAII 97 (260)
T ss_pred CCceEEEEcCCCCHHHHHHHHHHHHHhcCCccEEEECccc
Confidence 4567899999999998888776 57999999984
No 166
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=71.96 E-value=3.2 Score=37.47 Aligned_cols=35 Identities=14% Similarity=0.316 Sum_probs=29.0
Q ss_pred cCCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 5 LGKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 5 l~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
++.++.++++|+.|++++.++++ +.|+||||+|..
T Consensus 50 ~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ag~~ 91 (257)
T PRK07067 50 IGPAAIAVSLDVTRQDSIDRIVAAAVERFGGIDILFNNAALF 91 (257)
T ss_pred hCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 44567889999999999988877 579999999843
No 167
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=71.89 E-value=6.1 Score=34.82 Aligned_cols=40 Identities=10% Similarity=-0.024 Sum_probs=31.8
Q ss_pred HHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCC
Q 018848 22 LLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCD 63 (349)
Q Consensus 22 l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~ 63 (349)
..++++++|+||+|..++.. . ..+-+.|.+.|+++|....
T Consensus 104 ~~~~~~~~dvVi~~~~~~~~-~-~~ln~~c~~~~ip~i~~~~ 143 (197)
T cd01492 104 PEEFFSQFDVVVATELSRAE-L-VKINELCRKLGVKFYATGV 143 (197)
T ss_pred HHHHHhCCCEEEECCCCHHH-H-HHHHHHHHHcCCCEEEEEe
Confidence 45778999999999876443 3 4788999999999988764
No 168
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=71.85 E-value=4 Score=37.08 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=27.8
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
+.++..+++|+.|.+++.++++ +.|++||++|.+
T Consensus 50 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~Ag~~ 90 (262)
T TIGR03325 50 GDAVVGVEGDVRSLDDHKEAVARCVAAFGKIDCLIPNAGIW 90 (262)
T ss_pred CCceEEEEeccCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 4567889999999988877775 579999999853
No 169
>PRK07063 short chain dehydrogenase; Provisional
Probab=71.66 E-value=4.1 Score=36.83 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=28.6
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
+.++.++++|+.|++++.++++ +.|++||++|..
T Consensus 57 ~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag~~ 97 (260)
T PRK07063 57 GARVLAVPADVTDAASVAAAVAAAEEAFGPLDVLVNNAGIN 97 (260)
T ss_pred CceEEEEEccCCCHHHHHHHHHHHHHHhCCCcEEEECCCcC
Confidence 3457789999999999988876 689999999853
No 170
>PRK06172 short chain dehydrogenase; Provisional
Probab=71.57 E-value=3.1 Score=37.45 Aligned_cols=33 Identities=15% Similarity=0.343 Sum_probs=27.9
Q ss_pred CCCCceEEEeCCCHHHHHHHhcC-------CcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALRD-------VDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~~-------~dvVIn~agP 38 (349)
+.++..+++|+.|.+++.++++. .|+|||++|.
T Consensus 55 ~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~id~li~~ag~ 94 (253)
T PRK06172 55 GGEALFVACDVTRDAEVKALVEQTIAAYGRLDYAFNNAGI 94 (253)
T ss_pred CCceEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 45688999999999999888764 5999999984
No 171
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=71.37 E-value=3.2 Score=34.55 Aligned_cols=35 Identities=23% Similarity=0.487 Sum_probs=29.8
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPFQ 40 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~~ 40 (349)
+.++.+.+.|+.|.++++++++ ..|++|||+|-+.
T Consensus 51 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ld~li~~ag~~~ 92 (167)
T PF00106_consen 51 GAKITFIECDLSDPESIRALIEEVIKRFGPLDILINNAGIFS 92 (167)
T ss_dssp TSEEEEEESETTSHHHHHHHHHHHHHHHSSESEEEEECSCTT
T ss_pred cccccccccccccccccccccccccccccccccccccccccc
Confidence 4668999999999999888876 7799999998544
No 172
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=71.35 E-value=4.2 Score=38.14 Aligned_cols=77 Identities=9% Similarity=0.005 Sum_probs=47.8
Q ss_pred HHHHHHhcCCcEEEEccCCCCCC--CcHHH-HHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchh
Q 018848 20 GSLLMALRDVDLVVHAAGPFQQA--PKCTV-LEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVS 96 (349)
Q Consensus 20 ~~l~~~~~~~dvVIn~agP~~~~--~~~~v-~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls 96 (349)
+.+.+.+.++|+||||...-... .+.++ -...++.+....|+...+.- ..+-.+|+++|..++.|.
T Consensus 188 ~~l~~~~~~aDivINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~----T~ll~~A~~~G~~~~~Gl------- 256 (288)
T PRK12749 188 QAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHM----TKLLQQAQQAGCKTIDGY------- 256 (288)
T ss_pred hhhhhhcccCCEEEECCCCCCCCCCCCCCCCcHHHCCCCCEEEEecCCCcc----CHHHHHHHHCCCeEECCH-------
Confidence 34556677899999999533211 11011 22345667778899865421 245667889998866554
Q ss_pred HHHHHHHHHHH
Q 018848 97 NVMAAELVRVA 107 (349)
Q Consensus 97 ~lla~~~~~~l 107 (349)
.||...++.++
T Consensus 257 ~ML~~Qa~~~f 267 (288)
T PRK12749 257 GMLLWQGAEQF 267 (288)
T ss_pred HHHHHHHHHHH
Confidence 57777777654
No 173
>PRK12746 short chain dehydrogenase; Provisional
Probab=71.33 E-value=4.4 Score=36.39 Aligned_cols=33 Identities=15% Similarity=0.244 Sum_probs=27.7
Q ss_pred CCCceEEEeCCCHHHHHHHhc-------------CCcEEEEccCCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALR-------------DVDLVVHAAGPF 39 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~-------------~~dvVIn~agP~ 39 (349)
.++.++++|+.|++++.++++ +.|+||||+|..
T Consensus 56 ~~~~~~~~D~~d~~~i~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 101 (254)
T PRK12746 56 GKAFLIEADLNSIDGVKKLVEQLKNELQIRVGTSEIDILVNNAGIG 101 (254)
T ss_pred CcEEEEEcCcCCHHHHHHHHHHHHHHhccccCCCCccEEEECCCCC
Confidence 457789999999999988776 589999999853
No 174
>PRK08339 short chain dehydrogenase; Provisional
Probab=71.31 E-value=4.8 Score=36.73 Aligned_cols=33 Identities=9% Similarity=0.268 Sum_probs=28.3
Q ss_pred CCCCceEEEeCCCHHHHHHHhc------CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR------DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~------~~dvVIn~agP 38 (349)
+.++.++++|+.|++++.++++ +.|++||++|.
T Consensus 57 ~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~iD~lv~nag~ 95 (263)
T PRK08339 57 NVDVSYIVADLTKREDLERTVKELKNIGEPDIFFFSTGG 95 (263)
T ss_pred CCceEEEEecCCCHHHHHHHHHHHHhhCCCcEEEECCCC
Confidence 4467899999999999988886 58999999984
No 175
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=71.27 E-value=7.1 Score=36.88 Aligned_cols=42 Identities=10% Similarity=0.055 Sum_probs=34.6
Q ss_pred CHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEec
Q 018848 18 NEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDV 61 (349)
Q Consensus 18 d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi 61 (349)
|.+.+.++++++|+|++|+.-+.. . .-+-.+|.+.++.+|+.
T Consensus 98 ~~~~l~~li~~~DvV~d~tDn~es-R-~L~~~~~~~~~k~~I~a 139 (307)
T cd01486 98 DVKRLEELIKDHDVIFLLTDSRES-R-WLPTLLSAAKNKLVINA 139 (307)
T ss_pred CHHHHHHHHhhCCEEEECCCCHHH-H-HHHHHHHHHhCCcEEEE
Confidence 677899999999999999965443 2 57888999999999985
No 176
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=71.06 E-value=4.3 Score=36.31 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=28.0
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
+.++.++++|+.|++++.++++ +.|+|||++|.
T Consensus 53 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 92 (250)
T PRK08063 53 GRKALAVKANVGDVEKIKEMFAQIDEEFGRLDVFVNNAAS 92 (250)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 4457889999999999888876 47999999985
No 177
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=70.84 E-value=5.7 Score=38.14 Aligned_cols=82 Identities=17% Similarity=0.141 Sum_probs=56.3
Q ss_pred CCHHHHHHHhcCCcEEEEccC-CCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcch
Q 018848 17 YNEGSLLMALRDVDLVVHAAG-PFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGV 95 (349)
Q Consensus 17 ~d~~~l~~~~~~~dvVIn~ag-P~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGl 95 (349)
+|..++.=.+...|+||++.| |-. + ..+.-.||++|.|.|=++-|.+..--- -|.++|.++|+..=.+.|-.|+.
T Consensus 90 T~D~~~i~~~~~IdvIIdATG~p~v--G-A~~~l~Ai~h~KHlVMmNVEaDvtIGp-~Lk~~Ad~~GviyS~~~GDeP~~ 165 (438)
T COG4091 90 TDDAELIIANDLIDVIIDATGVPEV--G-AKIALEAILHGKHLVMMNVEADVTIGP-ILKQQADAAGVIYSGGAGDEPSS 165 (438)
T ss_pred ecchhhhhcCCcceEEEEcCCCcch--h-hHhHHHHHhcCCeEEEEEeeeceeecH-HHHHHHhhcCeEEeccCCCCcHH
Confidence 343344444557899999998 433 4 599999999999999877654321100 24556888999888889999997
Q ss_pred hHHHHHH
Q 018848 96 SNVMAAE 102 (349)
Q Consensus 96 s~lla~~ 102 (349)
-==|..+
T Consensus 166 ~mEL~ef 172 (438)
T COG4091 166 CMELYEF 172 (438)
T ss_pred HHHHHHH
Confidence 5444443
No 178
>PRK00124 hypothetical protein; Validated
Probab=70.65 E-value=21 Score=30.14 Aligned_cols=49 Identities=10% Similarity=0.070 Sum_probs=38.3
Q ss_pred CceEEEeCCCH---HHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCCh
Q 018848 9 SEFAEVNIYNE---GSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDT 65 (349)
Q Consensus 9 ~~~~~~Dv~d~---~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~ 65 (349)
++.++||..-. ..+.+.++.-|+||. . + .+++..|++.|+..++..|+.
T Consensus 45 v~~v~V~~g~D~AD~~Iv~~~~~gDiVIT-~----D---i~LAa~~l~Kga~vl~prG~~ 96 (151)
T PRK00124 45 IRTVYVDAGFDAADNEIVQLAEKGDIVIT-Q----D---YGLAALALEKGAIVLNPRGYI 96 (151)
T ss_pred eEEEEeCCCCChHHHHHHHhCCCCCEEEe-C----C---HHHHHHHHHCCCEEECCCCcC
Confidence 57788864421 346777888899994 2 2 799999999999999999865
No 179
>PRK05717 oxidoreductase; Validated
Probab=70.64 E-value=2.7 Score=37.97 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=27.2
Q ss_pred cCCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 5 LGKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 5 l~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
++.++.++++|+.|.+++.++++ ++|+|||++|-
T Consensus 54 ~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag~ 94 (255)
T PRK05717 54 LGENAWFIAMDVADEAQVAAGVAEVLGQFGRLDALVCNAAI 94 (255)
T ss_pred cCCceEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 44567889999999998876654 47999999984
No 180
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=70.60 E-value=6.1 Score=36.50 Aligned_cols=28 Identities=14% Similarity=0.199 Sum_probs=23.8
Q ss_pred EEEeCCCHHHHHHHhc--CCcEEEEccCCC
Q 018848 12 AEVNIYNEGSLLMALR--DVDLVVHAAGPF 39 (349)
Q Consensus 12 ~~~Dv~d~~~l~~~~~--~~dvVIn~agP~ 39 (349)
...|+.|.+++.++++ ++|+|||||++.
T Consensus 31 ~~~Dl~~~~~l~~~~~~~~~d~Vih~A~~~ 60 (306)
T PLN02725 31 KELDLTRQADVEAFFAKEKPTYVILAAAKV 60 (306)
T ss_pred ccCCCCCHHHHHHHHhccCCCEEEEeeeee
Confidence 4679999999999887 579999999753
No 181
>PRK06194 hypothetical protein; Provisional
Probab=70.59 E-value=4.4 Score=37.23 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=27.7
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
+.++.++++|+.|.+++.++++ +.|+|||++|-
T Consensus 54 ~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 54 GAEVLGVRTDVSDAAQVEALADAALERFGAVHLLFNNAGV 93 (287)
T ss_pred CCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 3456779999999999998887 47999999984
No 182
>PRK08263 short chain dehydrogenase; Provisional
Probab=70.53 E-value=2.8 Score=38.39 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=28.1
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
+.++..+++|+.|++++.+++. ++|+||||+|..
T Consensus 48 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 88 (275)
T PRK08263 48 GDRLLPLALDVTDRAAVFAAVETAVEHFGRLDIVVNNAGYG 88 (275)
T ss_pred cCCeeEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCc
Confidence 4567788999999999888766 569999999853
No 183
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.48 E-value=5.4 Score=35.98 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=26.8
Q ss_pred CCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 8 NSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
++.++++|+.|++++.++++ +.|+||||+|.
T Consensus 52 ~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~ag~ 89 (255)
T PRK06463 52 GVFTIKCDVGNRDQVKKSKEVVEKEFGRVDVLVNNAGI 89 (255)
T ss_pred CCeEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 36789999999999988876 57999999984
No 184
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=70.38 E-value=35 Score=31.48 Aligned_cols=42 Identities=14% Similarity=0.133 Sum_probs=25.6
Q ss_pred HHHHHHHHHc--CCCeEe-cCCChhHHHHHHHHHHHHHHcCCcEEecC
Q 018848 45 CTVLEAAIET--KTAYID-VCDDTIYSQRAKSFKDRAIAANIPAITTG 89 (349)
Q Consensus 45 ~~v~~aci~~--Gv~YvD-i~~~~~~~~~~~~l~~~a~~~g~~~v~~~ 89 (349)
+.++++|+++ |++.|. ++++....+++ -+.+++.|+.+|.-+
T Consensus 79 ~~v~eaaL~~~~G~~iINsIs~~~~~~~~~---~~l~~~~g~~vv~m~ 123 (261)
T PRK07535 79 PAAIEAGLKVAKGPPLINSVSAEGEKLEVV---LPLVKKYNAPVVALT 123 (261)
T ss_pred HHHHHHHHHhCCCCCEEEeCCCCCccCHHH---HHHHHHhCCCEEEEe
Confidence 6888888888 888775 66643212222 334566777666544
No 185
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=70.38 E-value=40 Score=28.62 Aligned_cols=77 Identities=17% Similarity=0.168 Sum_probs=54.4
Q ss_pred HHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHH-cCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchhH
Q 018848 21 SLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIE-TKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVSN 97 (349)
Q Consensus 21 ~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~-~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls~ 97 (349)
.|.+.++ +++.|.--.|... .++.++..+ .|+.||....|.....-. +..+|..|...+.-+-..||++|
T Consensus 5 ~l~~~L~~~Gv~~vFgipG~~~----~~l~~al~~~~~i~~v~~rhE~~A~~mA---~gyar~tg~~~v~~~t~GpG~~n 77 (164)
T cd07039 5 VIVETLENWGVKRVYGIPGDSI----NGLMDALRREGKIEFIQVRHEEAAAFAA---SAEAKLTGKLGVCLGSSGPGAIH 77 (164)
T ss_pred HHHHHHHHCCCCEEEEcCCCch----HHHHHHHhhcCCCeEEEeCCHHHHHHHH---HHHHHHhCCCEEEEECCCCcHHH
Confidence 4555555 7888887666433 588888877 789999988876432222 34466677777777778899999
Q ss_pred HHHHHHH
Q 018848 98 VMAAELV 104 (349)
Q Consensus 98 lla~~~~ 104 (349)
++..-+-
T Consensus 78 ~~~~l~~ 84 (164)
T cd07039 78 LLNGLYD 84 (164)
T ss_pred HHHHHHH
Confidence 9877544
No 186
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.32 E-value=4.8 Score=35.76 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=28.5
Q ss_pred CCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
.++.++.+|+.|++++.+++. ++|+||+++|..
T Consensus 55 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 94 (247)
T PRK05565 55 GDAIAVKADVSSEEDVENLVEQIVEKFGKIDILVNNAGIS 94 (247)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 457889999999999988876 799999999864
No 187
>PRK06398 aldose dehydrogenase; Validated
Probab=70.24 E-value=4.8 Score=36.54 Aligned_cols=31 Identities=19% Similarity=0.518 Sum_probs=26.6
Q ss_pred CCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 8 NSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
++.++++|+.|++++.++++ +.|+|||++|.
T Consensus 45 ~~~~~~~D~~~~~~i~~~~~~~~~~~~~id~li~~Ag~ 82 (258)
T PRK06398 45 DVDYFKVDVSNKEQVIKGIDYVISKYGRIDILVNNAGI 82 (258)
T ss_pred ceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 46789999999999888775 68999999984
No 188
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=70.23 E-value=8.9 Score=40.27 Aligned_cols=57 Identities=23% Similarity=0.271 Sum_probs=40.4
Q ss_pred CCCceEEEeCCCHHHHHHHh--cCCcEEEEccCCCCCC---Cc------------HHHHHHHHHcC--CCeEecCC
Q 018848 7 KNSEFAEVNIYNEGSLLMAL--RDVDLVVHAAGPFQQA---PK------------CTVLEAAIETK--TAYIDVCD 63 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~--~~~dvVIn~agP~~~~---~~------------~~v~~aci~~G--v~YvDi~~ 63 (349)
++++++..|+.|.+.+.+++ .++|+|||||+..... .+ ..++++|.+.| .++|=++.
T Consensus 57 ~~v~~~~~Dl~d~~~~~~~~~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS 132 (668)
T PLN02260 57 PNFKFVKGDIASADLVNYLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVST 132 (668)
T ss_pred CCeEEEECCCCChHHHHHHHhhcCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence 35788999999999888765 5899999999854311 00 14678888876 25665553
No 189
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=70.16 E-value=33 Score=29.21 Aligned_cols=70 Identities=21% Similarity=0.085 Sum_probs=51.5
Q ss_pred CCcEEEEccCCCCCCCcHHHHHHHHH-cCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchhHHHHHHHH
Q 018848 28 DVDLVVHAAGPFQQAPKCTVLEAAIE-TKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVSNVMAAELV 104 (349)
Q Consensus 28 ~~dvVIn~agP~~~~~~~~v~~aci~-~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls~lla~~~~ 104 (349)
+++.|.--.|... .++.+++.+ .|..||+...|....--. +..++..|...+..+...||++|++..-+-
T Consensus 11 Gv~~vFg~pG~~~----~~l~~al~~~~~i~~v~~rhE~~A~~mA---dgyar~sg~~gv~~~t~GpG~~n~~~gl~~ 81 (162)
T cd07037 11 GVRDVVISPGSRS----APLALAAAEHPEFRLHVRVDERSAAFFA---LGLAKASGRPVAVVCTSGTAVANLLPAVVE 81 (162)
T ss_pred CCCEEEECCCcch----HHHHHHHHhCCCceEEeccChHHHHHHH---HHHHHhhCCCEEEEECCchHHHHHhHHHHH
Confidence 7899986655322 588889876 489999998877533222 445677888888888899999998876544
No 190
>PRK06500 short chain dehydrogenase; Provisional
Probab=70.05 E-value=4.1 Score=36.36 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=27.1
Q ss_pred cCCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 5 LGKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 5 l~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
++.++.++++|+.|.+++.++++ ++|+||||+|.
T Consensus 50 ~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 90 (249)
T PRK06500 50 LGESALVIRADAGDVAAQKALAQALAEAFGRLDAVFINAGV 90 (249)
T ss_pred hCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 45567789999999988766554 67999999984
No 191
>PRK06940 short chain dehydrogenase; Provisional
Probab=69.99 E-value=5.5 Score=36.68 Aligned_cols=33 Identities=27% Similarity=0.291 Sum_probs=27.8
Q ss_pred CCCCceEEEeCCCHHHHHHHhc------CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR------DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~------~~dvVIn~agP 38 (349)
+.++.++++|+.|++++.++++ +.|+|||++|-
T Consensus 48 ~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~li~nAG~ 86 (275)
T PRK06940 48 GFDVSTQEVDVSSRESVKALAATAQTLGPVTGLVHTAGV 86 (275)
T ss_pred CCeEEEEEeecCCHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 3457789999999999988875 58999999984
No 192
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=69.97 E-value=4.3 Score=36.11 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=27.5
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
+.+++++.+|+.|.+++.++++ +.|+||||+|.
T Consensus 51 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 90 (245)
T PRK12936 51 GERVKIFPANLSDRDEVKALGQKAEADLEGVDILVNNAGI 90 (245)
T ss_pred CCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 4467889999999999888754 58999999984
No 193
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=69.95 E-value=9.5 Score=35.87 Aligned_cols=63 Identities=13% Similarity=0.024 Sum_probs=44.8
Q ss_pred HHHHHHhcC--CcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCC-hhHHHHHHHHHHHHHHcCCcEE
Q 018848 20 GSLLMALRD--VDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDD-TIYSQRAKSFKDRAIAANIPAI 86 (349)
Q Consensus 20 ~~l~~~~~~--~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~-~~~~~~~~~l~~~a~~~g~~~v 86 (349)
.++.++-.. .|++|-|+++... +.+++.|.+.|++.+=+-.+ .. .++..++-+.|++.|+.++
T Consensus 55 ~sv~dlp~~~~~DlAvi~vp~~~v---~~~l~e~~~~gvk~avI~s~Gf~-~~~~~~l~~~a~~~girvl 120 (291)
T PRK05678 55 NTVAEAVEATGANASVIYVPPPFA---ADAILEAIDAGIDLIVCITEGIP-VLDMLEVKAYLERKKTRLI 120 (291)
T ss_pred CCHHHHhhccCCCEEEEEcCHHHH---HHHHHHHHHCCCCEEEEECCCCC-HHHHHHHHHHHHHcCCEEE
Confidence 356666665 8999999976554 68999999999998654222 12 2323467788999998766
No 194
>PRK07814 short chain dehydrogenase; Provisional
Probab=69.87 E-value=5.3 Score=36.31 Aligned_cols=33 Identities=15% Similarity=0.280 Sum_probs=27.8
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
+.++.++++|+.|++++.++++ +.|+|||++|.
T Consensus 58 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~Ag~ 97 (263)
T PRK07814 58 GRRAHVVAADLAHPEATAGLAGQAVEAFGRLDIVVNNVGG 97 (263)
T ss_pred CCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 4467889999999999987765 67999999984
No 195
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=69.68 E-value=4.6 Score=36.09 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=28.7
Q ss_pred CCCceEEEeCCCHHHHHHHhcC-------CcEEEEccCCCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALRD-------VDLVVHAAGPFQ 40 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~~-------~dvVIn~agP~~ 40 (349)
.++.++++|+.|++++.++++. .|+||+|+|...
T Consensus 56 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~ 96 (247)
T PRK12935 56 HDVYAVQADVSKVEDANRLVEEAVNHFGKVDILVNNAGITR 96 (247)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 4578899999999999988875 799999998543
No 196
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.63 E-value=5.4 Score=35.83 Aligned_cols=32 Identities=19% Similarity=0.217 Sum_probs=27.2
Q ss_pred CCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
.++.++++|+.|++++.++++ +.|+||||+|.
T Consensus 52 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 90 (256)
T PRK12745 52 VEVIFFPADVADLSAHEAMLDAAQAAWGRIDCLVNNAGV 90 (256)
T ss_pred CceEEEEecCCCHHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence 457899999999998888765 67999999984
No 197
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=69.61 E-value=6.2 Score=31.61 Aligned_cols=56 Identities=18% Similarity=0.150 Sum_probs=36.5
Q ss_pred cCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEE-ecC
Q 018848 27 RDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAI-TTG 89 (349)
Q Consensus 27 ~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v-~~~ 89 (349)
...|+++-|+.|-.. +.+++.|.+.|+.++=+.... .. .++.+.++++|+.++ ++|
T Consensus 54 ~~iDlavv~~~~~~~---~~~v~~~~~~g~~~v~~~~g~-~~---~~~~~~a~~~gi~vigp~C 110 (116)
T PF13380_consen 54 EPIDLAVVCVPPDKV---PEIVDEAAALGVKAVWLQPGA-ES---EELIEAAREAGIRVIGPNC 110 (116)
T ss_dssp ST-SEEEE-S-HHHH---HHHHHHHHHHT-SEEEE-TTS------HHHHHHHHHTT-EEEESS-
T ss_pred CCCCEEEEEcCHHHH---HHHHHHHHHcCCCEEEEEcch-HH---HHHHHHHHHcCCEEEeCCc
Confidence 588999999976554 699999999999998876541 12 245667888999887 544
No 198
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=69.51 E-value=4.9 Score=35.94 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=28.1
Q ss_pred cCCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 5 LGKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 5 l~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
++.++.++++|+.|.+++.++++ +.|++||++|-
T Consensus 50 ~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~li~~ag~ 90 (248)
T TIGR01832 50 LGRRFLSLTADLSDIEAIKALVDSAVEEFGHIDILVNNAGI 90 (248)
T ss_pred cCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 34567899999999999987664 58999999984
No 199
>PRK08278 short chain dehydrogenase; Provisional
Probab=69.46 E-value=5.4 Score=36.57 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=27.7
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
+.++.++++|+.|++++.++++ +.|+|||++|.
T Consensus 61 ~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~id~li~~ag~ 100 (273)
T PRK08278 61 GGQALPLVGDVRDEDQVAAAVAKAVERFGGIDICVNNASA 100 (273)
T ss_pred CCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 3457788999999999988776 67999999983
No 200
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=69.46 E-value=5.7 Score=35.53 Aligned_cols=34 Identities=21% Similarity=0.343 Sum_probs=27.9
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
+.++.++++|+.|++++.++++ +.|+||+|+|..
T Consensus 51 ~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~ag~~ 91 (248)
T PRK06947 51 GGRACVVAGDVANEADVIAMFDAVQSAFGRLDALVNNAGIV 91 (248)
T ss_pred CCcEEEEEeccCCHHHHHHHHHHHHHhcCCCCEEEECCccC
Confidence 3467899999999998877664 689999999854
No 201
>PRK05876 short chain dehydrogenase; Provisional
Probab=69.44 E-value=3.3 Score=38.17 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=27.4
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
+.++.++++|+.|.+++.++++ +.|+|||++|-
T Consensus 54 ~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~li~nAg~ 93 (275)
T PRK05876 54 GFDVHGVMCDVRHREEVTHLADEAFRLLGHVDVVFSNAGI 93 (275)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 3457788999999999988876 46999999983
No 202
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=69.33 E-value=3.3 Score=38.33 Aligned_cols=70 Identities=14% Similarity=0.111 Sum_probs=46.4
Q ss_pred cCCcEEEEccCCCCC--CCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchhHHHHHHHH
Q 018848 27 RDVDLVVHAAGPFQQ--APKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVSNVMAAELV 104 (349)
Q Consensus 27 ~~~dvVIn~agP~~~--~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls~lla~~~~ 104 (349)
.++|+||||++-... ..+.++....++.+...+|++..+.-. .+.++|+++|..++.|. +||...++
T Consensus 177 ~~~DivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~p~~T----~ll~~A~~~G~~~vdG~-------~Ml~~Qa~ 245 (270)
T TIGR00507 177 HRVDLIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVYNPGET----PFLAEAKSLGTKTIDGL-------GMLVAQAA 245 (270)
T ss_pred cCccEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEeccCCCCC----HHHHHHHHCCCeeeCCH-------HHHHHHHH
Confidence 479999999953211 111133356678899999998765322 45677899998866554 57777777
Q ss_pred HHH
Q 018848 105 RVA 107 (349)
Q Consensus 105 ~~l 107 (349)
.++
T Consensus 246 ~~f 248 (270)
T TIGR00507 246 LAF 248 (270)
T ss_pred HHH
Confidence 653
No 203
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=69.04 E-value=27 Score=32.51 Aligned_cols=69 Identities=6% Similarity=0.042 Sum_probs=50.1
Q ss_pred HHHHHHhcC-Cc-EEEEccCCCCCCCcHHHHHHHHHcCCCeEe-cCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchh
Q 018848 20 GSLLMALRD-VD-LVVHAAGPFQQAPKCTVLEAAIETKTAYID-VCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVS 96 (349)
Q Consensus 20 ~~l~~~~~~-~d-vVIn~agP~~~~~~~~v~~aci~~Gv~YvD-i~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls 96 (349)
..|.+++.. +| ++|+=.-|... +..++.|+++|+++|- +||..+ +++.++ .+++++.++.+.-|+-|+.
T Consensus 59 ~~l~~~~~~~~d~VvIDFT~P~~~---~~n~~~~~~~gv~~ViGTTG~~~--~~~~~l---~~~~~i~~l~apNfSiGv~ 130 (275)
T TIGR02130 59 ARIGEVFAKYPELICIDYTHPSAV---NDNAAFYGKHGIPFVMGTTGGDR--EALAKL---VADAKHPAVIAPNMAKQIV 130 (275)
T ss_pred ccHHHHHhhcCCEEEEECCChHHH---HHHHHHHHHCCCCEEEcCCCCCH--HHHHHH---HHhcCCCEEEECcccHHHH
Confidence 456666665 89 99999988776 5789999999999997 445332 233334 3345688888888888875
No 204
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=69.01 E-value=6.2 Score=37.31 Aligned_cols=71 Identities=17% Similarity=0.164 Sum_probs=44.4
Q ss_pred cCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCCh--hHH-HHHHHHHHHHHHcCCcEEecCCcCcchhHHHHHHH
Q 018848 27 RDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDT--IYS-QRAKSFKDRAIAANIPAITTGGIYPGVSNVMAAEL 103 (349)
Q Consensus 27 ~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~--~~~-~~~~~l~~~a~~~g~~~v~~~G~~PGls~lla~~~ 103 (349)
.++|+|+.|+++... ...+..|+++|+|.||.+.-. +++ -.+ .+++.....++. +...||-+-+-..++
T Consensus 69 ~dIDiVf~AT~a~~H---~e~a~~a~eaGk~VID~sPA~~~PlvVP~V-N~~~~~~~~~~~----iia~p~~ati~~v~A 140 (302)
T PRK08300 69 DDIDIVFDATSAGAH---VRHAAKLREAGIRAIDLTPAAIGPYCVPAV-NLDEHLDAPNVN----MVTCGGQATIPIVAA 140 (302)
T ss_pred CCCCEEEECCCHHHH---HHHHHHHHHcCCeEEECCccccCCcccCcC-CHHHHhcccCCC----EEECccHHHHHHHHH
Confidence 579999999987655 589999999999999998643 221 111 222222223333 335566665555555
Q ss_pred HH
Q 018848 104 VR 105 (349)
Q Consensus 104 ~~ 105 (349)
.+
T Consensus 141 l~ 142 (302)
T PRK08300 141 VS 142 (302)
T ss_pred hc
Confidence 53
No 205
>PRK06197 short chain dehydrogenase; Provisional
Probab=69.01 E-value=5.1 Score=37.39 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=27.4
Q ss_pred CCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
.++.++++|+.|.++++++++ +.|+|||++|-
T Consensus 67 ~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~li~nAg~ 105 (306)
T PRK06197 67 ADVTLQELDLTSLASVRAAADALRAAYPRIDLLINNAGV 105 (306)
T ss_pred CceEEEECCCCCHHHHHHHHHHHHhhCCCCCEEEECCcc
Confidence 457889999999999988775 58999999984
No 206
>PRK06125 short chain dehydrogenase; Provisional
Probab=69.00 E-value=5 Score=36.31 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=28.0
Q ss_pred CCCCceEEEeCCCHHHHHHHhc---CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR---DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~---~~dvVIn~agP 38 (349)
+.++..+++|+.|++++.++++ +.|++|||+|.
T Consensus 56 ~~~~~~~~~D~~~~~~~~~~~~~~g~id~lv~~ag~ 91 (259)
T PRK06125 56 GVDVAVHALDLSSPEAREQLAAEAGDIDILVNNAGA 91 (259)
T ss_pred CCceEEEEecCCCHHHHHHHHHHhCCCCEEEECCCC
Confidence 4567889999999999888776 68999999984
No 207
>PRK12744 short chain dehydrogenase; Provisional
Probab=68.85 E-value=4.9 Score=36.28 Aligned_cols=33 Identities=9% Similarity=0.236 Sum_probs=27.9
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
+.++.++++|+.|++++.++++ +.|++||++|.
T Consensus 60 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ag~ 99 (257)
T PRK12744 60 GAKAVAFQADLTTAAAVEKLFDDAKAAFGRPDIAINTVGK 99 (257)
T ss_pred CCcEEEEecCcCCHHHHHHHHHHHHHhhCCCCEEEECCcc
Confidence 3467889999999999988776 57999999984
No 208
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=68.78 E-value=48 Score=35.85 Aligned_cols=84 Identities=13% Similarity=-0.024 Sum_probs=55.7
Q ss_pred cEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCCh--hHHHHHHHHHHHHHHcCCcEEecCCcCcchhHHHHHHHHHHH
Q 018848 30 DLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDT--IYSQRAKSFKDRAIAANIPAITTGGIYPGVSNVMAAELVRVA 107 (349)
Q Consensus 30 dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~--~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls~lla~~~~~~l 107 (349)
++||+|.+ .... ......|++.|+|.|-.+-.. .......+|.+.|+++|+.+...+-...|+.=+-. .+.+
T Consensus 543 ~vvVd~t~-~~~~--~~~~~~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~~~~~~yEasV~~giPii~~---l~~l 616 (810)
T PRK09466 543 LVVLDVTA-SEQL--ALQYPDFASHGFHVISANKLAGSSPSNFYRQIKDAFAKTGRHWLYNATVGAGLPINHT---VRDL 616 (810)
T ss_pred cEEEECCC-ChHH--HHHHHHHHHcCCEEEcCCcccccccHHHHHHHHHHHHHcCCeEEEeceeeeccChHHH---HHHH
Confidence 49999995 3332 345569999999999987642 11234456778899999999988877777653222 1111
Q ss_pred hcccCCCCcEEEE
Q 018848 108 RNESKGEPERLRF 120 (349)
Q Consensus 108 ~~~~~~~v~~i~i 120 (349)
. +..+++.+|+-
T Consensus 617 ~-~~gd~i~~i~G 628 (810)
T PRK09466 617 R-NSGDSILAISG 628 (810)
T ss_pred H-hccCcEEEEEE
Confidence 1 23577877764
No 209
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=68.77 E-value=4.2 Score=36.28 Aligned_cols=31 Identities=10% Similarity=0.219 Sum_probs=27.4
Q ss_pred CCCceEEEeCCCHHHHHHHhc-------CCcEEEEccC
Q 018848 7 KNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAG 37 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~ag 37 (349)
+.+-..++|+.|.+++++++. ..+++|||||
T Consensus 50 p~~~t~v~Dv~d~~~~~~lvewLkk~~P~lNvliNNAG 87 (245)
T COG3967 50 PEIHTEVCDVADRDSRRELVEWLKKEYPNLNVLINNAG 87 (245)
T ss_pred cchheeeecccchhhHHHHHHHHHhhCCchheeeeccc
Confidence 457889999999999888876 6799999999
No 210
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=68.51 E-value=5.1 Score=37.98 Aligned_cols=32 Identities=22% Similarity=0.135 Sum_probs=27.9
Q ss_pred CCCceEEEeCCCHHHHHHHhcC--CcEEEEccCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALRD--VDLVVHAAGP 38 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~~--~dvVIn~agP 38 (349)
.++++++.|+.|.+++.+++++ +|+|||||+.
T Consensus 60 ~~~~~~~~Dl~d~~~~~~~~~~~~~d~Vih~A~~ 93 (340)
T PLN02653 60 ARMKLHYGDLSDASSLRRWLDDIKPDEVYNLAAQ 93 (340)
T ss_pred CceEEEEecCCCHHHHHHHHHHcCCCEEEECCcc
Confidence 3478899999999999999984 6999999984
No 211
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=68.48 E-value=5.6 Score=36.16 Aligned_cols=52 Identities=12% Similarity=-0.031 Sum_probs=35.3
Q ss_pred CceEEEeCCCHHHH-HHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecC
Q 018848 9 SEFAEVNIYNEGSL-LMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVC 62 (349)
Q Consensus 9 ~~~~~~Dv~d~~~l-~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~ 62 (349)
++...-++.+.+.. .++++++|+||+|+.-+.. . ..+-+.|.+.++++||.+
T Consensus 71 i~~~~~~i~~~~~~~~~f~~~~DvVi~a~Dn~~a-R-~~ln~~c~~~~iplI~~g 123 (234)
T cd01484 71 VVPYQNKVGPEQDFNDTFFEQFHIIVNALDNIIA-R-RYVNGMLIFLIVPLIESG 123 (234)
T ss_pred EEEEeccCChhhhchHHHHhCCCEEEECCCCHHH-H-HHHHHHHHHcCCCEEEEc
Confidence 34444455443332 4688999999999864332 2 467888999999888864
No 212
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=68.47 E-value=5.9 Score=35.85 Aligned_cols=31 Identities=16% Similarity=0.274 Sum_probs=26.9
Q ss_pred CCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 8 NSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
++.++++|+.|+++++++++ +.|+|||++|.
T Consensus 49 ~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~li~naG~ 86 (259)
T PRK08340 49 EVYAVKADLSDKDDLKNLVKEAWELLGGIDALVWNAGN 86 (259)
T ss_pred CceEEEcCCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 57789999999999988774 68999999984
No 213
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=68.26 E-value=5 Score=38.66 Aligned_cols=41 Identities=17% Similarity=0.132 Sum_probs=32.2
Q ss_pred HHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChh
Q 018848 23 LMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTI 66 (349)
Q Consensus 23 ~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~ 66 (349)
.++++++|+|+-|++ .. .. ..++..++++|++.||.+++..
T Consensus 63 ~~~~~~~DvVf~alP-~~-~s-~~~~~~~~~~G~~VIDlS~~fR 103 (346)
T TIGR01850 63 EEIAEDADVVFLALP-HG-VS-AELAPELLAAGVKVIDLSADFR 103 (346)
T ss_pred HHhhcCCCEEEECCC-ch-HH-HHHHHHHHhCCCEEEeCChhhh
Confidence 344468999999985 33 33 5899999999999999998653
No 214
>PRK07890 short chain dehydrogenase; Provisional
Probab=68.13 E-value=4.5 Score=36.38 Aligned_cols=34 Identities=21% Similarity=0.196 Sum_probs=28.4
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
+.++.++++|+.|++++.++++ ++|+|||++|..
T Consensus 53 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~d~vi~~ag~~ 93 (258)
T PRK07890 53 GRRALAVPTDITDEDQCANLVALALERFGRVDALVNNAFRV 93 (258)
T ss_pred CCceEEEecCCCCHHHHHHHHHHHHHHcCCccEEEECCccC
Confidence 4567899999999999887775 579999999854
No 215
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=67.98 E-value=5.7 Score=35.47 Aligned_cols=33 Identities=30% Similarity=0.373 Sum_probs=28.1
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
+.++.++.+|+.|.+++.++++ +.|+||||+|.
T Consensus 51 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 90 (250)
T TIGR03206 51 GGNAQAFACDITDRDSVDTAVAAAEQALGPVDVLVNNAGW 90 (250)
T ss_pred CCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 4568899999999999988876 58999999974
No 216
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=67.95 E-value=5.2 Score=36.63 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=28.0
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
+.++.++++|+.|.+++.++++ ++|+||||+|..
T Consensus 58 ~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~id~li~~ag~~ 98 (278)
T PRK08277 58 GGEALAVKADVLDKESLEQARQQILEDFGPCDILINGAGGN 98 (278)
T ss_pred CCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 3457789999999998887765 789999999843
No 217
>PRK08264 short chain dehydrogenase; Validated
Probab=67.94 E-value=6.8 Score=34.74 Aligned_cols=33 Identities=24% Similarity=0.351 Sum_probs=28.6
Q ss_pred CCCCceEEEeCCCHHHHHHHhc---CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR---DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~---~~dvVIn~agP 38 (349)
+.++.++++|+.|++++.++++ ..|+||+++|.
T Consensus 48 ~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~ 83 (238)
T PRK08264 48 GPRVVPLQLDVTDPASVAAAAEAASDVTILVNNAGI 83 (238)
T ss_pred CCceEEEEecCCCHHHHHHHHHhcCCCCEEEECCCc
Confidence 3467899999999999998887 47999999986
No 218
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=67.87 E-value=5.8 Score=35.88 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=26.5
Q ss_pred CCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
.++.++++|+.|++++.++++ +.|++||++|-
T Consensus 55 ~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~nAg~ 93 (252)
T PRK06079 55 EEDLLVECDVASDESIERAFATIKERVGKIDGIVHAIAY 93 (252)
T ss_pred CceeEEeCCCCCHHHHHHHHHHHHHHhCCCCEEEEcccc
Confidence 356789999999998887654 57999999984
No 219
>PRK08589 short chain dehydrogenase; Validated
Probab=67.82 E-value=6.1 Score=36.17 Aligned_cols=33 Identities=24% Similarity=0.302 Sum_probs=27.8
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
+.++..+++|+.|++++.++++ +.|++||++|.
T Consensus 53 ~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~Ag~ 92 (272)
T PRK08589 53 GGKAKAYHVDISDEQQVKDFASEIKEQFGRVDVLFNNAGV 92 (272)
T ss_pred CCeEEEEEeecCCHHHHHHHHHHHHHHcCCcCEEEECCCC
Confidence 4468899999999999888776 47999999984
No 220
>PRK07806 short chain dehydrogenase; Provisional
Probab=67.75 E-value=6.1 Score=35.29 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=27.8
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
+.++.++++|+.|++++.++++ +.|+|||++|..
T Consensus 55 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 95 (248)
T PRK07806 55 GGRASAVGADLTDEESVAALMDTAREEFGGLDALVLNASGG 95 (248)
T ss_pred CCceEEEEcCCCCHHHHHHHHHHHHHhCCCCcEEEECCCCC
Confidence 3456788999999999988775 589999999743
No 221
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=67.58 E-value=38 Score=32.46 Aligned_cols=89 Identities=10% Similarity=-0.024 Sum_probs=54.0
Q ss_pred hcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhH-----------HHHHHHHHHHHHH--cCCcEEecCCcC
Q 018848 26 LRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIY-----------SQRAKSFKDRAIA--ANIPAITTGGIY 92 (349)
Q Consensus 26 ~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~-----------~~~~~~l~~~a~~--~g~~~v~~~G~~ 92 (349)
.+++|+|+.|++.... ..++.++.++|++-||.+++..+ ..+...+-+..++ ++..+|.+-|..
T Consensus 71 ~~~~DvVf~a~p~~~s---~~~~~~~~~~G~~VIDlsg~fR~~~~~~~~~p~vn~~~~~~~e~~~~~~~~~~iVanPgC~ 147 (341)
T TIGR00978 71 SKDVDIVFSALPSEVA---EEVEPKLAEAGKPVFSNASNHRMDPDVPLIIPEVNSDHLELLKVQKERGWKGFIVTNPNCT 147 (341)
T ss_pred hccCCEEEEeCCHHHH---HHHHHHHHHCCCEEEECChhhccCCCCceeccccCHHHHhhHHhhhhhccCccEEeCCCcH
Confidence 3689999999964433 58889999999999999987422 1111122111111 133477777777
Q ss_pred cchhHHHHHHHHHHHhcccCCCCcEEEEEEe
Q 018848 93 PGVSNVMAAELVRVARNESKGEPERLRFSYY 123 (349)
Q Consensus 93 PGls~lla~~~~~~l~~~~~~~v~~i~i~~~ 123 (349)
+--.-+..+-+.+ ...++++.+..+
T Consensus 148 ~t~~~lal~pL~~------~~~i~~v~v~t~ 172 (341)
T TIGR00978 148 TAGLTLALKPLID------AFGIKKVHVTTM 172 (341)
T ss_pred HHHHHHHHHHHHH------hCCCcEEEEEEE
Confidence 6655555555553 234667766544
No 222
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=67.52 E-value=53 Score=32.00 Aligned_cols=110 Identities=13% Similarity=0.153 Sum_probs=61.7
Q ss_pred eEEEeCCCHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCC--eEecCCChhH-------HHHHH--HHHHHHH
Q 018848 11 FAEVNIYNEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTA--YIDVCDDTIY-------SQRAK--SFKDRAI 79 (349)
Q Consensus 11 ~~~~Dv~d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~--YvDi~~~~~~-------~~~~~--~l~~~a~ 79 (349)
..+.++.|++.+ +++|+|+-|+| .... ..++..+.++|+. .||.+++..+ +.++. .+.. +.
T Consensus 52 ~~v~~~~~~~~~----~~~Divf~a~~--~~~s-~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~-~~ 123 (369)
T PRK06598 52 GTLQDAFDIDAL----KKLDIIITCQG--GDYT-NEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDD-AL 123 (369)
T ss_pred ceEEecCChhHh----cCCCEEEECCC--HHHH-HHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHh-hh
Confidence 455666655443 68999999997 3344 4888889999965 9999976422 11221 1111 22
Q ss_pred HcCCcEEecCCcCcchhHHHHHHHHHHHhcccCCCCcEEEEEEeecCCCCCchhhH
Q 018848 80 AANIPAITTGGIYPGVSNVMAAELVRVARNESKGEPERLRFSYYTAGTGGAGPTIL 135 (349)
Q Consensus 80 ~~g~~~v~~~G~~PGls~lla~~~~~~l~~~~~~~v~~i~i~~~~~g~~~~~~~~~ 135 (349)
+.|..++. .||=+-.....+..-|. ....++++.+..++ +.++.|...+
T Consensus 124 ~~g~~iIa----nPnC~tt~~~laL~PL~--~~~~i~~viVst~q-avSGAG~~g~ 172 (369)
T PRK06598 124 ANGVKTFV----GGNCTVSLMLMALGGLF--KNDLVEWVSVMTYQ-AASGAGARNM 172 (369)
T ss_pred hcCCCEEE----cCChHHHHHHHHHHHHH--hcCCceEEEEEeee-cccccCHHHH
Confidence 35644554 55544433333333332 24557788776554 3344554433
No 223
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=67.46 E-value=10 Score=30.38 Aligned_cols=42 Identities=12% Similarity=0.080 Sum_probs=30.9
Q ss_pred HHHHHHhc--CCcEEEEccCC-CCCC---CcHHHHHHHHHcCCCeEec
Q 018848 20 GSLLMALR--DVDLVVHAAGP-FQQA---PKCTVLEAAIETKTAYIDV 61 (349)
Q Consensus 20 ~~l~~~~~--~~dvVIn~agP-~~~~---~~~~v~~aci~~Gv~YvDi 61 (349)
..+.++++ ++|+|||+..| .... ....+-++|++++++|+-.
T Consensus 60 ~~i~~~i~~g~i~~VInt~~~~~~~~~~~dg~~iRr~a~~~~Ip~~Tt 107 (115)
T cd01422 60 QQIGALIAEGEIDAVIFFRDPLTAQPHEPDVKALLRLCDVYNIPLATN 107 (115)
T ss_pred hHHHHHHHcCceeEEEEcCCCCCCCcccccHHHHHHHHHHcCCCEEEc
Confidence 34566665 88999999765 3221 1268999999999999875
No 224
>PRK05650 short chain dehydrogenase; Provisional
Probab=67.44 E-value=6.7 Score=35.73 Aligned_cols=34 Identities=18% Similarity=0.356 Sum_probs=28.5
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
+.++.++++|+.|++++.++++ +.|+|||++|..
T Consensus 48 ~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~lI~~ag~~ 88 (270)
T PRK05650 48 GGDGFYQRCDVRDYSQLTALAQACEEKWGGIDVIVNNAGVA 88 (270)
T ss_pred CCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 4567889999999999888775 689999999854
No 225
>PRK08618 ornithine cyclodeaminase; Validated
Probab=67.26 E-value=4.2 Score=38.75 Aligned_cols=40 Identities=10% Similarity=0.011 Sum_probs=30.7
Q ss_pred HHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChh
Q 018848 22 LLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTI 66 (349)
Q Consensus 22 l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~ 66 (349)
+.++++++|+||+|+ |... +-+. .+++.|+|.+-+..+.+
T Consensus 186 ~~~~~~~aDiVi~aT-~s~~---p~i~-~~l~~G~hV~~iGs~~p 225 (325)
T PRK08618 186 ADEAIEEADIIVTVT-NAKT---PVFS-EKLKKGVHINAVGSFMP 225 (325)
T ss_pred HHHHHhcCCEEEEcc-CCCC---cchH-HhcCCCcEEEecCCCCc
Confidence 456778999999998 4443 3556 99999999988876543
No 226
>PRK06128 oxidoreductase; Provisional
Probab=67.19 E-value=5.3 Score=37.24 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=27.3
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
+.++.++++|+.|.+++.++++ +.|+|||++|.
T Consensus 105 ~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lV~nAg~ 144 (300)
T PRK06128 105 GRKAVALPGDLKDEAFCRQLVERAVKELGGLDILVNIAGK 144 (300)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence 4456788999999999888775 67999999984
No 227
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=66.98 E-value=20 Score=33.56 Aligned_cols=31 Identities=10% Similarity=0.208 Sum_probs=22.6
Q ss_pred CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeE-ecCC
Q 018848 28 DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYI-DVCD 63 (349)
Q Consensus 28 ~~dvVIn~agP~~~~~~~~v~~aci~~Gv~Yv-Di~~ 63 (349)
..++.| ++. .++ +.++++|+++|+++| |+++
T Consensus 88 ~~~~~I-SID-T~~---~~va~~AL~~GadiINDI~g 119 (282)
T PRK11613 88 RFEVWI-SVD-TSK---PEVIRESAKAGAHIINDIRS 119 (282)
T ss_pred cCCCeE-EEE-CCC---HHHHHHHHHcCCCEEEECCC
Confidence 446655 333 233 799999999999999 7776
No 228
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=66.88 E-value=4.1 Score=36.54 Aligned_cols=33 Identities=18% Similarity=0.387 Sum_probs=27.5
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
+.++.++.+|+.|++++.++++ ..|+||||+|.
T Consensus 48 ~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~ag~ 87 (254)
T TIGR02415 48 GGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFDVMVNNAGV 87 (254)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 4457889999999999888765 56999999984
No 229
>PRK07576 short chain dehydrogenase; Provisional
Probab=66.74 E-value=4.2 Score=37.11 Aligned_cols=32 Identities=13% Similarity=0.163 Sum_probs=26.5
Q ss_pred CCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
.++.++++|+.|++++.++++ +.|+|||++|.
T Consensus 58 ~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~iD~vi~~ag~ 96 (264)
T PRK07576 58 PEGLGVSADVRDYAAVEAAFAQIADEFGPIDVLVSGAAG 96 (264)
T ss_pred CceEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 356788999999999988775 46999999974
No 230
>PRK07024 short chain dehydrogenase; Provisional
Probab=66.73 E-value=5 Score=36.31 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=27.4
Q ss_pred CCceEEEeCCCHHHHHHHhcC-------CcEEEEccCCC
Q 018848 8 NSEFAEVNIYNEGSLLMALRD-------VDLVVHAAGPF 39 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~~-------~dvVIn~agP~ 39 (349)
++.++++|++|++++.++++. .|++||++|..
T Consensus 51 ~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id~lv~~ag~~ 89 (257)
T PRK07024 51 RVSVYAADVRDADALAAAAADFIAAHGLPDVVIANAGIS 89 (257)
T ss_pred eeEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEECCCcC
Confidence 678999999999999887763 69999999854
No 231
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=66.57 E-value=4.3 Score=35.95 Aligned_cols=32 Identities=22% Similarity=0.521 Sum_probs=27.5
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAG 37 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~ag 37 (349)
+.++.++.+|+.|++++.+++. +.|+||||+|
T Consensus 55 ~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id~vi~~ag 93 (249)
T PRK12825 55 GRRAQAVQADVTDKAALEAAVAAAVERFGRIDILVNNAG 93 (249)
T ss_pred CCceEEEECCcCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence 4567889999999999988775 5699999998
No 232
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=66.55 E-value=7.2 Score=37.31 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=34.5
Q ss_pred CHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCC
Q 018848 18 NEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDD 64 (349)
Q Consensus 18 d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~ 64 (349)
|++++.=--.++|+|+-|+|+|.. ...+..++++|+.-||++..
T Consensus 79 ~p~~~~w~~~gvDiVie~tG~~~s---~e~a~~~l~aGa~~V~~SaP 122 (325)
T TIGR01532 79 TPEALPWRALGVDLVLDCTGVYGN---REQGERHIRAGAKRVLFSHP 122 (325)
T ss_pred ChhhccccccCCCEEEEccchhcc---HHHHHHHHHcCCeEEEecCC
Confidence 555442112499999999999876 58899999999999999953
No 233
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=66.40 E-value=14 Score=29.29 Aligned_cols=44 Identities=14% Similarity=0.068 Sum_probs=30.0
Q ss_pred CHHHHHHHhc--CCcEEEEccCCCC----CCCcHHHHHHHHHcCCCeEec
Q 018848 18 NEGSLLMALR--DVDLVVHAAGPFQ----QAPKCTVLEAAIETKTAYIDV 61 (349)
Q Consensus 18 d~~~l~~~~~--~~dvVIn~agP~~----~~~~~~v~~aci~~Gv~YvDi 61 (349)
+++-...+.+ ++|+|||...|.. ....+.+-++|++++++|+--
T Consensus 56 ~~~i~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T~ 105 (112)
T cd00532 56 EPTVDAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTTP 105 (112)
T ss_pred CcHHHHHHhCCCCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEEC
Confidence 4444333333 5799999875543 222379999999999999864
No 234
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=66.39 E-value=3.7 Score=38.20 Aligned_cols=74 Identities=16% Similarity=0.133 Sum_probs=48.9
Q ss_pred HHHhcCCcEEEEccCCCCCC--CcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchhHHHH
Q 018848 23 LMALRDVDLVVHAAGPFQQA--PKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVSNVMA 100 (349)
Q Consensus 23 ~~~~~~~dvVIn~agP~~~~--~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls~lla 100 (349)
.+.+.++|+||||++--... ...++...++..+...+|+...+.- ..|-+.|+++|..++.|. +||.
T Consensus 180 ~~~~~~~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P~~----T~ll~~A~~~G~~~~~G~-------~Ml~ 248 (278)
T PRK00258 180 QEELADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGPLP----TPFLAWAKAQGARTIDGL-------GMLV 248 (278)
T ss_pred hhccccCCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCCCC----CHHHHHHHHCcCeecCCH-------HHHH
Confidence 35567899999999422211 0014556788889999999875421 245667889998865544 5778
Q ss_pred HHHHHHH
Q 018848 101 AELVRVA 107 (349)
Q Consensus 101 ~~~~~~l 107 (349)
..++.++
T Consensus 249 ~Qa~~~f 255 (278)
T PRK00258 249 HQAAEAF 255 (278)
T ss_pred HHHHHHH
Confidence 7777653
No 235
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=66.37 E-value=5.5 Score=37.39 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=27.8
Q ss_pred CCCCceEEEeCCCHHHHHHHhc------CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR------DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~------~~dvVIn~agP 38 (349)
+.++.++++|+.|.+++.++++ +.|+|||++|-
T Consensus 61 g~~~~~~~~Dv~d~~~~~~~~~~~~~~g~iD~li~nAG~ 99 (306)
T PRK07792 61 GAKAVAVAGDISQRATADELVATAVGLGGLDIVVNNAGI 99 (306)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 4567789999999999988775 58999999983
No 236
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=66.36 E-value=40 Score=27.65 Aligned_cols=51 Identities=10% Similarity=0.035 Sum_probs=40.5
Q ss_pred CCCceEEEeCCCH---HHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCCh
Q 018848 7 KNSEFAEVNIYNE---GSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDT 65 (349)
Q Consensus 7 ~~~~~~~~Dv~d~---~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~ 65 (349)
+.++++.||-... ..+.+.++..|+||. ++ .+++..|++.|+..++..|..
T Consensus 27 ~~~~~i~Vd~g~DaaD~~I~~~~~~gDiVIT-----qD---igLA~~~l~Kga~vl~~rG~~ 80 (130)
T PF02639_consen 27 PYVEMIVVDSGFDAADFYIVNHAKPGDIVIT-----QD---IGLASLLLAKGAYVLNPRGKE 80 (130)
T ss_pred CCeEEEEECCCCChHHHHHHHcCCCCCEEEE-----CC---HHHHHHHHHCCCEEECCCCCC
Confidence 3578899887733 246677789999994 23 799999999999999999864
No 237
>PRK05854 short chain dehydrogenase; Provisional
Probab=66.30 E-value=5.8 Score=37.38 Aligned_cols=33 Identities=12% Similarity=0.221 Sum_probs=27.8
Q ss_pred CCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
.++.++++|+.|.++++++++ +.|++||++|-+
T Consensus 65 ~~v~~~~~Dl~d~~sv~~~~~~~~~~~~~iD~li~nAG~~ 104 (313)
T PRK05854 65 AKLSLRALDLSSLASVAALGEQLRAEGRPIHLLINNAGVM 104 (313)
T ss_pred CceEEEEecCCCHHHHHHHHHHHHHhCCCccEEEECCccc
Confidence 357889999999999988875 489999999843
No 238
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=66.26 E-value=5.2 Score=37.43 Aligned_cols=75 Identities=15% Similarity=-0.016 Sum_probs=45.4
Q ss_pred HHHHhcCCcEEEEccCCCCCCC-cHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchhHHHH
Q 018848 22 LLMALRDVDLVVHAAGPFQQAP-KCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVSNVMA 100 (349)
Q Consensus 22 l~~~~~~~dvVIn~agP~~~~~-~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls~lla 100 (349)
+.+.+.++|+||||+.-..... +.++-...+..+.-..|+...+.- ..+-.+|+++|..++.|. +||.
T Consensus 188 ~~~~~~~~divINaTp~Gm~~~~~~~~~~~~l~~~~~v~D~vY~P~~----T~ll~~A~~~G~~~~~Gl-------~MLv 256 (283)
T PRK14027 188 IEDVIAAADGVVNATPMGMPAHPGTAFDVSCLTKDHWVGDVVYMPIE----TELLKAARALGCETLDGT-------RMAI 256 (283)
T ss_pred HHHHHhhcCEEEEcCCCCCCCCCCCCCCHHHcCCCcEEEEcccCCCC----CHHHHHHHHCCCEEEccH-------HHHH
Confidence 3445568999999984221110 012333456667778898765421 134566888998866554 5777
Q ss_pred HHHHHHH
Q 018848 101 AELVRVA 107 (349)
Q Consensus 101 ~~~~~~l 107 (349)
..++.++
T Consensus 257 ~Qa~~~f 263 (283)
T PRK14027 257 HQAVDAF 263 (283)
T ss_pred HHHHHHH
Confidence 7777543
No 239
>PRK09135 pteridine reductase; Provisional
Probab=66.24 E-value=7.7 Score=34.46 Aligned_cols=32 Identities=16% Similarity=0.306 Sum_probs=27.3
Q ss_pred CCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 8 NSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
.+.+++.|+.|.+++.++++ ++|+||||+|..
T Consensus 58 ~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 96 (249)
T PRK09135 58 SAAALQADLLDPDALPELVAACVAAFGRLDALVNNASSF 96 (249)
T ss_pred ceEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 47789999999999988876 479999999853
No 240
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=66.20 E-value=7.5 Score=38.39 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=27.2
Q ss_pred CceEEEeCCCHHHHHHHhcCCcEEEEccCC
Q 018848 9 SEFAEVNIYNEGSLLMALRDVDLVVHAAGP 38 (349)
Q Consensus 9 ~~~~~~Dv~d~~~l~~~~~~~dvVIn~agP 38 (349)
+..+.+|+.|++++.+.+.+.|++||++|-
T Consensus 226 v~~v~~Dvsd~~~v~~~l~~IDiLInnAGi 255 (406)
T PRK07424 226 VKTLHWQVGQEAALAELLEKVDILIINHGI 255 (406)
T ss_pred eEEEEeeCCCHHHHHHHhCCCCEEEECCCc
Confidence 567889999999999999999999999983
No 241
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=66.18 E-value=6.6 Score=35.04 Aligned_cols=33 Identities=27% Similarity=0.274 Sum_probs=26.9
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
+.++..+.+|+.|.+++.++++ +.|+||||+|.
T Consensus 52 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ag~ 91 (246)
T PRK12938 52 GFDFIASEGNVGDWDSTKAAFDKVKAEVGEIDVLVNNAGI 91 (246)
T ss_pred CCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 3456677899999998887765 68999999984
No 242
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=66.18 E-value=27 Score=34.19 Aligned_cols=66 Identities=17% Similarity=0.035 Sum_probs=43.8
Q ss_pred HHHHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEec
Q 018848 19 EGSLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITT 88 (349)
Q Consensus 19 ~~~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~ 88 (349)
.+.+.++++ ++|+||++.+=+. + .....+|+++|.+.+=-+-+. .+..-..+.+.+++.|+.++|=
T Consensus 80 ~~~~~~l~~~~~vD~Vv~Ai~G~a--G-l~ptl~Ai~aGK~VaLANKEs-lV~aG~~i~~~a~~~g~~i~PV 147 (385)
T PRK05447 80 EEGLCELAALPEADVVVAAIVGAA--G-LLPTLAAIRAGKRIALANKES-LVCAGELVMDAAKKSGAQILPV 147 (385)
T ss_pred hhHHHHHhcCCCCCEEEEeCcCcc--c-HHHHHHHHHCCCcEEEeCHHH-HHhhHHHHHHHHHHcCCeEEEE
Confidence 345666666 5799999985333 2 466889999999866544332 3333335566678888887764
No 243
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=66.14 E-value=6.9 Score=35.05 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=28.8
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
+.++..+++|+.|++++.++++ +.|+||+|+|..
T Consensus 52 ~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~a~~~ 92 (258)
T PRK12429 52 GGKAIGVAMDVTDEEAINAGIDYAVETFGGVDILVNNAGIQ 92 (258)
T ss_pred CCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 4567889999999999988877 589999999843
No 244
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=66.14 E-value=15 Score=35.97 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=28.1
Q ss_pred hcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCCh
Q 018848 26 LRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDT 65 (349)
Q Consensus 26 ~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~ 65 (349)
++++|+|+.|++. ... ..++.+ ++.|+..||++++.
T Consensus 102 ~~~~DvVf~Alp~--~~s-~~i~~~-~~~g~~VIDlSs~f 137 (381)
T PLN02968 102 FSDVDAVFCCLPH--GTT-QEIIKA-LPKDLKIVDLSADF 137 (381)
T ss_pred hcCCCEEEEcCCH--HHH-HHHHHH-HhCCCEEEEcCchh
Confidence 4799999999863 333 477777 57899999999765
No 245
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=66.13 E-value=6.6 Score=35.71 Aligned_cols=31 Identities=16% Similarity=0.335 Sum_probs=26.2
Q ss_pred CCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 8 NSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
++.++++|+.|++++.++++ +.|++|||+|-
T Consensus 60 ~~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~lv~nag~ 97 (258)
T PRK07370 60 PSLFLPCDVQDDAQIEETFETIKQKWGKLDILVHCLAF 97 (258)
T ss_pred cceEeecCcCCHHHHHHHHHHHHHHcCCCCEEEEcccc
Confidence 35688999999999988775 57999999984
No 246
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=66.09 E-value=6.9 Score=37.20 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=40.2
Q ss_pred ccCCCC--ceEEEeCCCHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecC
Q 018848 4 TLGKNS--EFAEVNIYNEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVC 62 (349)
Q Consensus 4 ~l~~~~--~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~ 62 (349)
++.+.+ +...-++.+.....++++++|+||+|...... . ..+-+.|.+.++++||..
T Consensus 64 ~lNp~v~V~~~~~~i~~~~~~~~f~~~~DvVv~a~Dn~~a-r-~~in~~c~~~~ip~I~~g 122 (312)
T cd01489 64 SFNPNVKIVAYHANIKDPDFNVEFFKQFDLVFNALDNLAA-R-RHVNKMCLAADVPLIESG 122 (312)
T ss_pred HHCCCCeEEEEeccCCCccchHHHHhcCCEEEECCCCHHH-H-HHHHHHHHHCCCCEEEEe
Confidence 344443 34444565543345889999999999975443 2 468899999999999975
No 247
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=66.03 E-value=6.6 Score=35.40 Aligned_cols=32 Identities=13% Similarity=0.263 Sum_probs=26.5
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAG 37 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~ag 37 (349)
+.++.++++|+.|.+++.++++ +.|++||++|
T Consensus 55 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~nAg 93 (260)
T PRK12823 55 GGEALALTADLETYAGAQAAMAAAVEAFGRIDVLINNVG 93 (260)
T ss_pred CCeEEEEEEeCCCHHHHHHHHHHHHHHcCCCeEEEECCc
Confidence 3456789999999988877776 5799999997
No 248
>PRK06198 short chain dehydrogenase; Provisional
Probab=65.90 E-value=6.5 Score=35.40 Aligned_cols=33 Identities=21% Similarity=0.351 Sum_probs=27.5
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
+.++.++.+|+.|++++.++++ ++|+||||+|.
T Consensus 55 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~ag~ 94 (260)
T PRK06198 55 GAKAVFVQADLSDVEDCRRVVAAADEAFGRLDALVNAAGL 94 (260)
T ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 4457789999999999888775 57999999984
No 249
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=65.80 E-value=4.5 Score=36.02 Aligned_cols=34 Identities=18% Similarity=0.329 Sum_probs=28.0
Q ss_pred CCCCceEEEeCCCHHHHHHHhcC-------CcEEEEccCCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALRD-------VDLVVHAAGPF 39 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~~-------~dvVIn~agP~ 39 (349)
+.++..+++|+.|++++.++++. .|+|||++|..
T Consensus 50 ~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~id~vi~~ag~~ 90 (247)
T PRK09730 50 GGKAFVLQADISDENQVVAMFTAIDQHDEPLAALVNNAGIL 90 (247)
T ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence 34577899999999999988774 58999999853
No 250
>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=65.73 E-value=4.3 Score=36.47 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=26.5
Q ss_pred CceEEEeCCCHHHHHHHhc----CCcEEEEccCCC
Q 018848 9 SEFAEVNIYNEGSLLMALR----DVDLVVHAAGPF 39 (349)
Q Consensus 9 ~~~~~~Dv~d~~~l~~~~~----~~dvVIn~agP~ 39 (349)
.+++++|+.|.+++.++++ +.|+|||++|..
T Consensus 25 ~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~ 59 (241)
T PRK12428 25 DGFIQADLGDPASIDAAVAALPGRIDALFNIAGVP 59 (241)
T ss_pred hHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCC
Confidence 3568999999999999887 589999999854
No 251
>PRK07774 short chain dehydrogenase; Provisional
Probab=65.68 E-value=7.1 Score=34.88 Aligned_cols=31 Identities=16% Similarity=0.188 Sum_probs=26.3
Q ss_pred CCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 8 NSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
++.++.+|+.|.+++.++++ +.|+||||+|-
T Consensus 56 ~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 93 (250)
T PRK07774 56 TAIAVQVDVSDPDSAKAMADATVSAFGGIDYLVNNAAI 93 (250)
T ss_pred cEEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 46788999999999888776 57999999984
No 252
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=65.66 E-value=6.9 Score=34.83 Aligned_cols=34 Identities=24% Similarity=0.415 Sum_probs=28.6
Q ss_pred CCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPFQ 40 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~~ 40 (349)
.++.++.+|+.|++++.+++. ++|+||||+|.+.
T Consensus 55 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~ 95 (251)
T PRK12826 55 GKARARQVDVRDRAALKAAVAAGVEDFGRLDILVANAGIFP 95 (251)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCCCC
Confidence 457889999999999998886 6899999997543
No 253
>PRK07677 short chain dehydrogenase; Provisional
Probab=65.62 E-value=4.9 Score=36.20 Aligned_cols=34 Identities=9% Similarity=0.125 Sum_probs=27.9
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
+.++.++++|+.|++++.+++. +.|+|||++|..
T Consensus 49 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lI~~ag~~ 89 (252)
T PRK07677 49 PGQVLTVQMDVRNPEDVQKMVEQIDEKFGRIDALINNAAGN 89 (252)
T ss_pred CCcEEEEEecCCCHHHHHHHHHHHHHHhCCccEEEECCCCC
Confidence 3467889999999999888764 579999999853
No 254
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=65.55 E-value=4.6 Score=36.05 Aligned_cols=32 Identities=22% Similarity=0.358 Sum_probs=27.3
Q ss_pred CCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
.++.++++|+.|++++.++++ +.|+|||++|.
T Consensus 53 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 91 (251)
T PRK07231 53 GRAIAVAADVSDEADVEAAVAAALERFGSVDILVNNAGT 91 (251)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 346799999999999998876 46999999984
No 255
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=65.46 E-value=14 Score=34.69 Aligned_cols=65 Identities=12% Similarity=0.017 Sum_probs=44.8
Q ss_pred HHHHHhcC--CcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHH-HHHHHHHHHHcCCcEE-ecC
Q 018848 21 SLLMALRD--VDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQR-AKSFKDRAIAANIPAI-TTG 89 (349)
Q Consensus 21 ~l~~~~~~--~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~-~~~l~~~a~~~g~~~v-~~~ 89 (349)
++.++-.. .|++|.|+++... +.+++.|.+.|+..+=+-.+- |.+. ..++-+.|+++|+.++ |+|
T Consensus 54 sv~dlp~~~~~Dlavi~vpa~~v---~~~l~e~~~~Gvk~avIis~G-f~e~~~~~l~~~a~~~girilGPNc 122 (286)
T TIGR01019 54 SVKEAVEETGANASVIFVPAPFA---ADAIFEAIDAGIELIVCITEG-IPVHDMLKVKRYMEESGTRLIGPNC 122 (286)
T ss_pred CHHHHhhccCCCEEEEecCHHHH---HHHHHHHHHCCCCEEEEECCC-CCHHHHHHHHHHHHHcCCEEECCCC
Confidence 55565555 7999999975554 689999999999887542211 2122 2467788999998776 444
No 256
>PRK12827 short chain dehydrogenase; Provisional
Probab=65.46 E-value=8.6 Score=34.14 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=28.9
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPFQ 40 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~~ 40 (349)
+.++.++.+|+.|.+++.+++. ++|.||+++|...
T Consensus 58 ~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~ 99 (249)
T PRK12827 58 GGKALGLAFDVRDFAATRAALDAGVEEFGRLDILVNNAGIAT 99 (249)
T ss_pred CCcEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCCCC
Confidence 3467899999999999988774 6899999998543
No 257
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=65.40 E-value=13 Score=31.50 Aligned_cols=70 Identities=17% Similarity=0.170 Sum_probs=39.7
Q ss_pred HHHHHhcCCcEEEEccCCCCCCCcHHHHH-----HHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcch
Q 018848 21 SLLMALRDVDLVVHAAGPFQQAPKCTVLE-----AAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGV 95 (349)
Q Consensus 21 ~l~~~~~~~dvVIn~agP~~~~~~~~v~~-----aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGl 95 (349)
++.++++++|+|+.|+.+.... ..++. ..++.|.-+||.+...+ +...++.++.+++|+ .++.+....|.
T Consensus 50 s~~e~~~~~dvvi~~v~~~~~v--~~v~~~~~i~~~l~~g~iiid~sT~~p--~~~~~~~~~~~~~g~-~~vdapV~Gg~ 124 (163)
T PF03446_consen 50 SPAEAAEQADVVILCVPDDDAV--EAVLFGENILAGLRPGKIIIDMSTISP--ETSRELAERLAAKGV-RYVDAPVSGGP 124 (163)
T ss_dssp SHHHHHHHBSEEEE-SSSHHHH--HHHHHCTTHGGGS-TTEEEEE-SS--H--HHHHHHHHHHHHTTE-EEEEEEEESHH
T ss_pred hhhhHhhcccceEeecccchhh--hhhhhhhHHhhccccceEEEecCCcch--hhhhhhhhhhhhccc-eeeeeeeeccc
Confidence 3466677899999998532211 12222 22356999999987543 333455666777885 56666666654
No 258
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=65.08 E-value=11 Score=34.34 Aligned_cols=58 Identities=12% Similarity=0.131 Sum_probs=42.2
Q ss_pred ccCCCCceEEEeC-CCHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCC
Q 018848 4 TLGKNSEFAEVNI-YNEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCD 63 (349)
Q Consensus 4 ~l~~~~~~~~~Dv-~d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~ 63 (349)
++++.++...... -+.+.+.+++++.|+|++|..-|.. - ..+-++|.++++++++.+.
T Consensus 95 ~ln~~v~v~~~~~~l~~~~~~~~~~~~d~v~d~~dn~~~-r-~~iN~~~~~~~~pli~~~~ 153 (254)
T COG0476 95 KLNPLVEVVAYLERLDEENAEELIAQFDVVLDCTDNFET-R-YLINDACVKLGIPLVHGGA 153 (254)
T ss_pred HhCCCCeEEEeecccChhhHHHHhccCCEEEECCCCHHH-H-HHHHHHHHHhCCCeEeeee
Confidence 4555544443333 3445558999999999999965443 3 5899999999999999874
No 259
>PRK06949 short chain dehydrogenase; Provisional
Probab=64.91 E-value=7.6 Score=34.87 Aligned_cols=34 Identities=18% Similarity=0.358 Sum_probs=28.5
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
+.++.++.+|+.|++++.++++ +.|+||||+|..
T Consensus 57 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~li~~ag~~ 97 (258)
T PRK06949 57 GGAAHVVSLDVTDYQSIKAAVAHAETEAGTIDILVNNSGVS 97 (258)
T ss_pred CCcEEEEEecCCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 3457889999999999988876 589999999853
No 260
>PRK12743 oxidoreductase; Provisional
Probab=64.80 E-value=7.4 Score=35.13 Aligned_cols=34 Identities=24% Similarity=0.400 Sum_probs=28.2
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
+.++.++++|+.|.+++.+++. ..|+||+|+|..
T Consensus 51 ~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~ag~~ 91 (256)
T PRK12743 51 GVRAEIRQLDLSDLPEGAQALDKLIQRLGRIDVLVNNAGAM 91 (256)
T ss_pred CCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 4568899999999998877765 579999999843
No 261
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=64.78 E-value=6.1 Score=35.88 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=28.1
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
+.++.++++|+.|.+++.+++. +.|+||+|+|.
T Consensus 58 ~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~ag~ 97 (265)
T PRK07097 58 GIEAHGYVCDVTDEDGVQAMVSQIEKEVGVIDILVNNAGI 97 (265)
T ss_pred CCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEECCCC
Confidence 4467889999999999988885 47999999984
No 262
>PRK07791 short chain dehydrogenase; Provisional
Probab=64.75 E-value=6.8 Score=36.32 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=27.4
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
+.++.++++|+.|.+++.++++ +.|++||++|..
T Consensus 63 ~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAG~~ 103 (286)
T PRK07791 63 GGEAVANGDDIADWDGAANLVDAAVETFGGLDVLVNNAGIL 103 (286)
T ss_pred CCceEEEeCCCCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 3456788999999998887764 679999999853
No 263
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=64.71 E-value=14 Score=35.93 Aligned_cols=53 Identities=21% Similarity=0.259 Sum_probs=38.1
Q ss_pred CCCCceEEEeCCCHHHHHHHhcCCcEEEEcc-CCCCCCCc--------------HHHHHHHHHcCCCeE
Q 018848 6 GKNSEFAEVNIYNEGSLLMALRDVDLVVHAA-GPFQQAPK--------------CTVLEAAIETKTAYI 59 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~~~dvVIn~a-gP~~~~~~--------------~~v~~aci~~Gv~Yv 59 (349)
..+++..+.|+.|...+.+.+.++ .|++|+ .|.-.... ..++++|.++|+.-+
T Consensus 54 ~~~v~~~~~D~~~~~~i~~a~~~~-~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~l 121 (361)
T KOG1430|consen 54 SGRVTVILGDLLDANSISNAFQGA-VVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKRL 121 (361)
T ss_pred CCceeEEecchhhhhhhhhhccCc-eEEEeccccCccccccchhhheeecchhHHHHHHHHHHhCCCEE
Confidence 356899999999999999999999 555555 55433221 256777777777644
No 264
>PRK05855 short chain dehydrogenase; Validated
Probab=64.71 E-value=5.1 Score=40.67 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=28.8
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
+.++.++++|+.|++++.++++ +.|+|||++|..
T Consensus 363 ~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~lv~~Ag~~ 403 (582)
T PRK05855 363 GAVAHAYRVDVSDADAMEAFAEWVRAEHGVPDIVVNNAGIG 403 (582)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhcCCCcEEEECCccC
Confidence 4567899999999999988876 379999999853
No 265
>PRK07062 short chain dehydrogenase; Provisional
Probab=64.63 E-value=5.2 Score=36.27 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=26.1
Q ss_pred CCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 8 NSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
++..+++|+.|.+++.++++ +.|+|||++|.
T Consensus 60 ~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~li~~Ag~ 97 (265)
T PRK07062 60 RLLAARCDVLDEADVAAFAAAVEARFGGVDMLVNNAGQ 97 (265)
T ss_pred eEEEEEecCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 56788999999999887764 57999999984
No 266
>PRK08251 short chain dehydrogenase; Provisional
Probab=64.55 E-value=7.3 Score=34.80 Aligned_cols=32 Identities=16% Similarity=0.284 Sum_probs=26.6
Q ss_pred CCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
.++.++++|+.|++++.++++ ++|+|||++|-
T Consensus 53 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 91 (248)
T PRK08251 53 IKVAVAALDVNDHDQVFEVFAEFRDELGGLDRVIVNAGI 91 (248)
T ss_pred ceEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 357889999999998877665 68999999983
No 267
>PRK06196 oxidoreductase; Provisional
Probab=64.43 E-value=7.9 Score=36.36 Aligned_cols=32 Identities=16% Similarity=0.286 Sum_probs=27.2
Q ss_pred CCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 8 NSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
++.++++|+.|.++++++++ ++|+|||++|..
T Consensus 72 ~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~li~nAg~~ 110 (315)
T PRK06196 72 GVEVVMLDLADLESVRAFAERFLDSGRRIDILINNAGVM 110 (315)
T ss_pred hCeEEEccCCCHHHHHHHHHHHHhcCCCCCEEEECCCCC
Confidence 37889999999999988774 689999999843
No 268
>PRK05875 short chain dehydrogenase; Provisional
Probab=64.29 E-value=7.5 Score=35.46 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=27.3
Q ss_pred CCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
.++.++++|+.|++++.++++ ++|+|||++|.
T Consensus 58 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~li~~ag~ 96 (276)
T PRK05875 58 GAVRYEPADVTDEDQVARAVDAATAWHGRLHGVVHCAGG 96 (276)
T ss_pred CceEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 357788899999999988876 68999999984
No 269
>PRK12829 short chain dehydrogenase; Provisional
Probab=64.04 E-value=8.2 Score=34.72 Aligned_cols=32 Identities=13% Similarity=0.204 Sum_probs=26.9
Q ss_pred CCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 8 NSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
++..+.+|+.|++++.++++ ++|+||+++|..
T Consensus 59 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 97 (264)
T PRK12829 59 KVTATVADVADPAQVERVFDTAVERFGGLDVLVNNAGIA 97 (264)
T ss_pred ceEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 35789999999999887764 789999999854
No 270
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=63.88 E-value=5.7 Score=35.09 Aligned_cols=34 Identities=15% Similarity=0.239 Sum_probs=27.7
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
+.++.++++|+.|++++.+++. ..|.||+++|..
T Consensus 47 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 87 (239)
T TIGR01830 47 GVKALGVVCDVSDREDVKAVVEEIEEELGPIDILVNNAGIT 87 (239)
T ss_pred CCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 3456789999999999888775 469999999853
No 271
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=63.87 E-value=41 Score=32.45 Aligned_cols=101 Identities=16% Similarity=0.207 Sum_probs=56.8
Q ss_pred hcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHH-------HHHH--HHHHHHHH--cCCcEEecCCcCcc
Q 018848 26 LRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYS-------QRAK--SFKDRAIA--ANIPAITTGGIYPG 94 (349)
Q Consensus 26 ~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~-------~~~~--~l~~~a~~--~g~~~v~~~G~~PG 94 (349)
++++|+|+-|+| .... ..++..+.++|+..||.+++..+. -++. .+.. +++ +...+|.+-|..+-
T Consensus 67 ~~~~D~vf~a~p--~~~s-~~~~~~~~~~g~~VIDlS~~fR~~~~~p~~vPEvn~~~i~~-~~~~~~~~~iIanPgC~~t 142 (344)
T PLN02383 67 FDGVDIALFSAG--GSIS-KKFGPIAVDKGAVVVDNSSAFRMEEGVPLVIPEVNPEAMKH-IKLGKGKGALIANPNCSTI 142 (344)
T ss_pred HcCCCEEEECCC--cHHH-HHHHHHHHhCCCEEEECCchhhcCCCCceECCCcCHHHHHh-hhhcccCCcEEECCCcHHH
Confidence 368999999996 3344 588888889999999999865321 1110 1111 210 11236666666655
Q ss_pred hhHHHHHHHHHHHhcccCCCCcEEEEEEeecCCCCCchhhHHH
Q 018848 95 VSNVMAAELVRVARNESKGEPERLRFSYYTAGTGGAGPTILAT 137 (349)
Q Consensus 95 ls~lla~~~~~~l~~~~~~~v~~i~i~~~~~g~~~~~~~~~~~ 137 (349)
..-+..+=+.+ ...+++|.+.-+. +.++.|......
T Consensus 143 ~~~laL~PL~~------~~~i~~vvv~t~~-~vSGAG~~~~~~ 178 (344)
T PLN02383 143 ICLMAVTPLHR------HAKVKRMVVSTYQ-AASGAGAAAMEE 178 (344)
T ss_pred HHHHHHHHHHH------cCCeeEEEEEeee-cccccCHHHHHH
Confidence 43333333432 2346788776553 444455443333
No 272
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=63.87 E-value=5.5 Score=31.79 Aligned_cols=36 Identities=25% Similarity=0.160 Sum_probs=27.3
Q ss_pred cCCcEEEEccCCCCCCCcHHH---HHHHHHcCCCeEecCCCh
Q 018848 27 RDVDLVVHAAGPFQQAPKCTV---LEAAIETKTAYIDVCDDT 65 (349)
Q Consensus 27 ~~~dvVIn~agP~~~~~~~~v---~~aci~~Gv~YvDi~~~~ 65 (349)
.++|+|+.|+++-.. ..+ +..+++.|+..||+++..
T Consensus 64 ~~~DvV~~~~~~~~~---~~~~~~~~~~~~~g~~viD~s~~~ 102 (122)
T smart00859 64 LAVDIVFLALPHGVS---KEIAPLLPKAAEAGVKVIDLSSAF 102 (122)
T ss_pred cCCCEEEEcCCcHHH---HHHHHHHHhhhcCCCEEEECCccc
Confidence 589999999976544 243 345678999999999854
No 273
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=63.77 E-value=6.6 Score=36.12 Aligned_cols=30 Identities=27% Similarity=0.364 Sum_probs=25.5
Q ss_pred CceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 9 SEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 9 ~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
...+++|+.|++++.++++ +.|++||++|-
T Consensus 62 ~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~nAG~ 98 (272)
T PRK08159 62 FVAGHCDVTDEASIDAVFETLEKKWGKLDFVVHAIGF 98 (272)
T ss_pred ceEEecCCCCHHHHHHHHHHHHHhcCCCcEEEECCcc
Confidence 4578999999999988765 57999999983
No 274
>PRK06484 short chain dehydrogenase; Validated
Probab=63.42 E-value=5.2 Score=40.40 Aligned_cols=35 Identities=20% Similarity=0.439 Sum_probs=28.6
Q ss_pred ccCCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 4 TLGKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 4 ~l~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
+++.++.++++|+.|++++.++++ +.|++||++|-
T Consensus 48 ~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~li~nag~ 89 (520)
T PRK06484 48 SLGPDHHALAMDVSDEAQIREGFEQLHREFGRIDVLVNNAGV 89 (520)
T ss_pred HhCCceeEEEeccCCHHHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 345567789999999999888775 58999999984
No 275
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=63.28 E-value=6.5 Score=35.82 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=24.9
Q ss_pred ceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 10 EFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 10 ~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
...++|+.|++++.++++ +.|++||++|-
T Consensus 59 ~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAG~ 94 (260)
T PRK06997 59 LVFPCDVASDEQIDALFASLGQHWDGLDGLVHSIGF 94 (260)
T ss_pred ceeeccCCCHHHHHHHHHHHHHHhCCCcEEEEcccc
Confidence 468899999999988774 58999999984
No 276
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=63.01 E-value=9.2 Score=37.53 Aligned_cols=49 Identities=18% Similarity=0.134 Sum_probs=36.8
Q ss_pred EEEeCCCHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCC
Q 018848 12 AEVNIYNEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCD 63 (349)
Q Consensus 12 ~~~Dv~d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~ 63 (349)
...+-.|++++.=--.++|+||.|+|.|.. ...+...+++|+.-||++.
T Consensus 134 ~v~~~~dp~~~~w~~~gvDiVie~TG~f~s---~~~a~~hl~aGAkkV~iSa 182 (395)
T PLN03096 134 KVVSDRNPLNLPWGELGIDLVIEGTGVFVD---REGAGKHIQAGAKKVLITA 182 (395)
T ss_pred EEEEcCCcccccccccCCCEEEECcchhhh---HHHHHHHHHCCCEEEEeCC
Confidence 334444566543111399999999998876 4789999999999999996
No 277
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=62.75 E-value=7.9 Score=34.27 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=26.8
Q ss_pred CCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
.++.++++|+.|++++.++++ ++|+||||+|-
T Consensus 50 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 88 (242)
T TIGR01829 50 FDFRVVEGDVSSFESCKAAVAKVEAELGPIDVLVNNAGI 88 (242)
T ss_pred CceEEEEecCCCHHHHHHHHHHHHHHcCCCcEEEECCCC
Confidence 467899999999998877664 58999999984
No 278
>PRK07577 short chain dehydrogenase; Provisional
Probab=62.62 E-value=9.8 Score=33.55 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=26.0
Q ss_pred ceEEEeCCCHHHHHHHhc------CCcEEEEccCCC
Q 018848 10 EFAEVNIYNEGSLLMALR------DVDLVVHAAGPF 39 (349)
Q Consensus 10 ~~~~~Dv~d~~~l~~~~~------~~dvVIn~agP~ 39 (349)
+++++|+.|++++.++++ ++|+||||+|..
T Consensus 44 ~~~~~D~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 79 (234)
T PRK07577 44 ELFACDLADIEQTAATLAQINEIHPVDAIVNNVGIA 79 (234)
T ss_pred eEEEeeCCCHHHHHHHHHHHHHhCCCcEEEECCCCC
Confidence 678999999999888776 689999999853
No 279
>PRK05872 short chain dehydrogenase; Provisional
Probab=62.50 E-value=7.5 Score=36.18 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=25.4
Q ss_pred CCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 8 NSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
++..+++|+.|.+++.++++ +.|+|||++|..
T Consensus 58 ~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~vI~nAG~~ 96 (296)
T PRK05872 58 RVLTVVADVTDLAAMQAAAEEAVERFGGIDVVVANAGIA 96 (296)
T ss_pred cEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 34556699999999888764 579999999853
No 280
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=62.43 E-value=8.1 Score=36.15 Aligned_cols=32 Identities=22% Similarity=0.273 Sum_probs=27.6
Q ss_pred CCceEEEeCCCHHHHHHHh-------cCCcEEEEccCCC
Q 018848 8 NSEFAEVNIYNEGSLLMAL-------RDVDLVVHAAGPF 39 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~-------~~~dvVIn~agP~ 39 (349)
++..+++|+.|.++..+++ .+.|+.||-||=.
T Consensus 64 ~v~~~~~Dvs~~~~~~~~~~~~~~~fg~vDvLVNNAG~~ 102 (282)
T KOG1205|consen 64 KVLVLQLDVSDEESVKKFVEWAIRHFGRVDVLVNNAGIS 102 (282)
T ss_pred ccEEEeCccCCHHHHHHHHHHHHHhcCCCCEEEecCccc
Confidence 4899999999999999665 4999999999843
No 281
>PRK07074 short chain dehydrogenase; Provisional
Probab=62.42 E-value=8.1 Score=34.75 Aligned_cols=31 Identities=29% Similarity=0.328 Sum_probs=26.8
Q ss_pred CCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 8 NSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
+++.+++|+.|.+++.+++. +.|+||+|+|.
T Consensus 50 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 87 (257)
T PRK07074 50 RFVPVACDLTDAASLAAALANAAAERGPVDVLVANAGA 87 (257)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 57889999999999988776 47999999984
No 282
>PRK06523 short chain dehydrogenase; Provisional
Probab=62.28 E-value=6.5 Score=35.48 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=26.3
Q ss_pred CCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
.++.++++|+.|++++.++++ +.|+|||++|.
T Consensus 49 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 87 (260)
T PRK06523 49 EGVEFVAADLTTAEGCAAVARAVLERLGGVDILVHVLGG 87 (260)
T ss_pred CceeEEecCCCCHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 457789999999998876653 67999999984
No 283
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=62.24 E-value=7.8 Score=35.63 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=24.7
Q ss_pred ceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 10 EFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 10 ~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
..+++|+.|++++.++++ ..|++||++|-
T Consensus 60 ~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG~ 95 (271)
T PRK06505 60 FVLPCDVEDIASVDAVFEALEKKWGKLDFVVHAIGF 95 (271)
T ss_pred eEEeCCCCCHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence 468899999999888775 57999999983
No 284
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=62.10 E-value=8.8 Score=35.14 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=25.6
Q ss_pred CCceEEEeCCCHHHHHHHhc-------CCcEEEEccC
Q 018848 8 NSEFAEVNIYNEGSLLMALR-------DVDLVVHAAG 37 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~ag 37 (349)
+...+++|+.|++++.++++ +.|++||++|
T Consensus 57 ~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~linnAg 93 (262)
T PRK07984 57 SDIVLPCDVAEDASIDAMFAELGKVWPKFDGFVHSIG 93 (262)
T ss_pred CceEeecCCCCHHHHHHHHHHHHhhcCCCCEEEECCc
Confidence 35678899999999998775 4799999998
No 285
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=62.03 E-value=17 Score=33.66 Aligned_cols=29 Identities=14% Similarity=0.050 Sum_probs=22.8
Q ss_pred eEEEeCCCHHHHHHHhc----CCcEEEEccCCC
Q 018848 11 FAEVNIYNEGSLLMALR----DVDLVVHAAGPF 39 (349)
Q Consensus 11 ~~~~Dv~d~~~l~~~~~----~~dvVIn~agP~ 39 (349)
.+..|+.|.+.++.+.+ ++|+||||+++.
T Consensus 45 ~~~~d~~~~~~~~~~~~~~~~~~D~vvh~A~~~ 77 (314)
T TIGR02197 45 VIADYIDKEDFLDRLEKGAFGKIEAIFHQGACS 77 (314)
T ss_pred eeeccCcchhHHHHHHhhccCCCCEEEECcccc
Confidence 45678888888877764 899999999853
No 286
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=62.03 E-value=6.5 Score=34.78 Aligned_cols=33 Identities=18% Similarity=0.387 Sum_probs=27.3
Q ss_pred CCCCceEEEeCCCHHHHHHHhcC-------CcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALRD-------VDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~~-------~dvVIn~agP 38 (349)
+.++.++++|+.|++++.+++++ +|.||+++|.
T Consensus 53 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 92 (246)
T PRK05653 53 GGEARVLVFDVSDEAAVRALIEAAVEAFGALDILVNNAGI 92 (246)
T ss_pred CCceEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 45678889999999988887764 5999999984
No 287
>PRK08862 short chain dehydrogenase; Provisional
Probab=61.92 E-value=9.5 Score=34.10 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=26.5
Q ss_pred CCCCceEEEeCCCHHHHHHHhc--------CCcEEEEccC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR--------DVDLVVHAAG 37 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~--------~~dvVIn~ag 37 (349)
+.++...++|+.|+++++++++ +.|++||++|
T Consensus 53 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~iD~li~nag 92 (227)
T PRK08862 53 TDNVYSFQLKDFSQESIRHLFDAIEQQFNRAPDVLVNNWT 92 (227)
T ss_pred CCCeEEEEccCCCHHHHHHHHHHHHHHhCCCCCEEEECCc
Confidence 4456778899999999987763 6899999997
No 288
>PRK06720 hypothetical protein; Provisional
Probab=61.89 E-value=10 Score=32.51 Aligned_cols=33 Identities=18% Similarity=0.415 Sum_probs=26.9
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
+.+..++.+|+.|.+++.++++ +.|++||++|-
T Consensus 64 ~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G~iDilVnnAG~ 103 (169)
T PRK06720 64 GGEALFVSYDMEKQGDWQRVISITLNAFSRIDMLFQNAGL 103 (169)
T ss_pred CCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 4456788999999998887653 68999999983
No 289
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=61.88 E-value=6.7 Score=35.38 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=27.3
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
+.++.++.+|+.|.+++.++++ ..|+|||++|.
T Consensus 66 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~vi~~ag~ 105 (256)
T PRK12748 66 GVRCEHMEIDLSQPYAPNRVFYAVSERLGDPSILINNAAY 105 (256)
T ss_pred CCeEEEEECCCCCHHHHHHHHHHHHHhCCCCCEEEECCCc
Confidence 4468899999999998877665 46999999984
No 290
>PLN00015 protochlorophyllide reductase
Probab=61.63 E-value=9.2 Score=35.84 Aligned_cols=32 Identities=13% Similarity=0.151 Sum_probs=26.7
Q ss_pred CCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
.++.++++|+.|.++++++++ +.|++||++|-
T Consensus 47 ~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~lInnAG~ 85 (308)
T PLN00015 47 DSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVLVCNAAV 85 (308)
T ss_pred CeEEEEEecCCCHHHHHHHHHHHHhcCCCCCEEEECCCc
Confidence 357788999999999888775 57999999984
No 291
>PRK06484 short chain dehydrogenase; Validated
Probab=61.63 E-value=5.7 Score=40.09 Aligned_cols=35 Identities=26% Similarity=0.404 Sum_probs=28.8
Q ss_pred ccCCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 4 TLGKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 4 ~l~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
+++.++..+++|+.|++++.++++ ..|++|||+|-
T Consensus 312 ~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~nAg~ 353 (520)
T PRK06484 312 ALGDEHLSVQADITDEAAVESAFAQIQARWGRLDVLVNNAGI 353 (520)
T ss_pred HhCCceeEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 345567789999999999988775 47999999984
No 292
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=61.57 E-value=11 Score=36.23 Aligned_cols=49 Identities=12% Similarity=0.103 Sum_probs=38.3
Q ss_pred EEEeCCCHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCC
Q 018848 12 AEVNIYNEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCD 63 (349)
Q Consensus 12 ~~~Dv~d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~ 63 (349)
..+--.|++++.=--.++|+|+.|+|.|.. ...+...+++|+.-||++.
T Consensus 74 ~~~~~~dp~~lpW~~~gvDiVle~tG~~~s---~~~a~~~l~aGak~V~iSa 122 (337)
T PTZ00023 74 HVFFEKDPAAIPWGKNGVDVVCESTGVFLT---KEKAQAHLKGGAKKVIMSA 122 (337)
T ss_pred EEEeCCChhhCCccccCCCEEEEecchhcC---HHHHHHHhhCCCEEEEeCC
Confidence 334455777665333499999999998865 4788999999999999996
No 293
>PRK07041 short chain dehydrogenase; Provisional
Probab=61.55 E-value=8.9 Score=33.78 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=28.1
Q ss_pred CCCCceEEEeCCCHHHHHHHhcC---CcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALRD---VDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~~---~dvVIn~agP 38 (349)
+.+++++.+|+.|++++.++++. +|++||++|-
T Consensus 44 ~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ag~ 79 (230)
T PRK07041 44 GAPVRTAALDITDEAAVDAFFAEAGPFDHVVITAAD 79 (230)
T ss_pred CCceEEEEccCCCHHHHHHHHHhcCCCCEEEECCCC
Confidence 34678899999999999998874 7999999983
No 294
>PRK07102 short chain dehydrogenase; Provisional
Probab=61.49 E-value=6.7 Score=35.04 Aligned_cols=33 Identities=24% Similarity=0.230 Sum_probs=27.7
Q ss_pred CCCCceEEEeCCCHHHHHHHhc----CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR----DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~----~~dvVIn~agP 38 (349)
+.+++++++|+.|.+++.++++ +.|+|||++|.
T Consensus 50 ~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~vv~~ag~ 86 (243)
T PRK07102 50 AVAVSTHELDILDTASHAAFLDSLPALPDIVLIAVGT 86 (243)
T ss_pred CCeEEEEecCCCChHHHHHHHHHHhhcCCEEEECCcC
Confidence 3468899999999999988776 46999999984
No 295
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=61.38 E-value=7.8 Score=34.38 Aligned_cols=32 Identities=25% Similarity=0.398 Sum_probs=27.1
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAG 37 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~ag 37 (349)
+.++.++++|+.|.+++.++++ +.|+|||++|
T Consensus 51 ~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id~vi~~ag 89 (245)
T PRK12824 51 EDQVRLKELDVTDTEECAEALAEIEEEEGPVDILVNNAG 89 (245)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 3458899999999998888765 4899999998
No 296
>PRK07825 short chain dehydrogenase; Provisional
Probab=61.34 E-value=9.4 Score=34.79 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=26.1
Q ss_pred CCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 8 NSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
++.++++|+.|++++.++++ +.|++||++|..
T Consensus 51 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ag~~ 89 (273)
T PRK07825 51 LVVGGPLDVTDPASFAAFLDAVEADLGPIDVLVNNAGVM 89 (273)
T ss_pred cceEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 47789999999998766654 579999999843
No 297
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=61.25 E-value=8.1 Score=34.77 Aligned_cols=33 Identities=15% Similarity=0.283 Sum_probs=27.5
Q ss_pred CCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
.++.++++|+.|.+++.++++ +.|+|||++|..
T Consensus 59 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~li~~ag~~ 98 (255)
T PRK07523 59 LSAHALAFDVTDHDAVRAAIDAFEAEIGPIDILVNNAGMQ 98 (255)
T ss_pred ceEEEEEccCCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 357788999999999988876 479999999853
No 298
>PRK08226 short chain dehydrogenase; Provisional
Probab=61.10 E-value=9.5 Score=34.43 Aligned_cols=33 Identities=21% Similarity=0.433 Sum_probs=27.8
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
+.++.++++|+.|++++.++++ +.|+|||++|.
T Consensus 53 ~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~id~vi~~ag~ 92 (263)
T PRK08226 53 GHRCTAVVADVRDPASVAAAIKRAKEKEGRIDILVNNAGV 92 (263)
T ss_pred CCceEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 3457789999999999988876 56999999984
No 299
>PRK07775 short chain dehydrogenase; Provisional
Probab=60.98 E-value=8.6 Score=35.23 Aligned_cols=33 Identities=15% Similarity=0.315 Sum_probs=27.3
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
+.++.++++|+.|.+++.++++ +.|+||+++|-
T Consensus 58 ~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~Ag~ 97 (274)
T PRK07775 58 GGEAVAFPLDVTDPDSVKSFVAQAEEALGEIEVLVSGAGD 97 (274)
T ss_pred CCeEEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 3457788899999999988776 57999999983
No 300
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=60.96 E-value=9.1 Score=34.67 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=26.5
Q ss_pred CCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 8 NSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
++.++++|+.|++++.++++ ..|+||||+|.
T Consensus 50 ~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~Ag~ 87 (266)
T PRK06171 50 NYQFVPTDVSSAEEVNHTVAEIIEKFGRIDGLVNNAGI 87 (266)
T ss_pred ceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 46788999999999988776 57999999984
No 301
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=60.92 E-value=11 Score=33.51 Aligned_cols=30 Identities=13% Similarity=0.230 Sum_probs=25.0
Q ss_pred CCceEEEeCCCHHHHHHHhc-------CCcEEEEccC
Q 018848 8 NSEFAEVNIYNEGSLLMALR-------DVDLVVHAAG 37 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~ag 37 (349)
+......|+.++.+++.+++ ..+++|||+|
T Consensus 63 ~h~aF~~DVS~a~~v~~~l~e~~k~~g~psvlVncAG 99 (256)
T KOG1200|consen 63 DHSAFSCDVSKAHDVQNTLEEMEKSLGTPSVLVNCAG 99 (256)
T ss_pred ccceeeeccCcHHHHHHHHHHHHHhcCCCcEEEEcCc
Confidence 56788999999988777554 6799999999
No 302
>PRK05693 short chain dehydrogenase; Provisional
Probab=60.92 E-value=12 Score=34.08 Aligned_cols=31 Identities=13% Similarity=0.269 Sum_probs=26.1
Q ss_pred CCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 8 NSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
++.++++|+.|.+++.++++ ++|+|||++|.
T Consensus 45 ~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 82 (274)
T PRK05693 45 GFTAVQLDVNDGAALARLAEELEAEHGGLDVLINNAGY 82 (274)
T ss_pred CCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 46788999999999887774 67999999984
No 303
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=60.91 E-value=8.5 Score=29.05 Aligned_cols=37 Identities=24% Similarity=0.252 Sum_probs=26.2
Q ss_pred HHHhcCCcEEEEccCCCCCCCcHHHHHHH--HHcCCCeEecC
Q 018848 23 LMALRDVDLVVHAAGPFQQAPKCTVLEAA--IETKTAYIDVC 62 (349)
Q Consensus 23 ~~~~~~~dvVIn~agP~~~~~~~~v~~ac--i~~Gv~YvDi~ 62 (349)
.++++.+|+||.|+.|... ..+++.. ...+..+||++
T Consensus 56 ~~~~~~advvilav~p~~~---~~v~~~i~~~~~~~~vis~~ 94 (96)
T PF03807_consen 56 EEAAQEADVVILAVKPQQL---PEVLSEIPHLLKGKLVISIA 94 (96)
T ss_dssp HHHHHHTSEEEE-S-GGGH---HHHHHHHHHHHTTSEEEEES
T ss_pred HHhhccCCEEEEEECHHHH---HHHHHHHhhccCCCEEEEeC
Confidence 4555689999999977664 4676665 67888888875
No 304
>PRK07578 short chain dehydrogenase; Provisional
Probab=60.89 E-value=9.5 Score=32.93 Aligned_cols=29 Identities=34% Similarity=0.398 Sum_probs=25.1
Q ss_pred ceEEEeCCCHHHHHHHhc---CCcEEEEccCC
Q 018848 10 EFAEVNIYNEGSLLMALR---DVDLVVHAAGP 38 (349)
Q Consensus 10 ~~~~~Dv~d~~~l~~~~~---~~dvVIn~agP 38 (349)
..+++|+.|+++++++++ +.|+|||++|.
T Consensus 34 ~~~~~D~~~~~~~~~~~~~~~~id~lv~~ag~ 65 (199)
T PRK07578 34 GDVQVDITDPASIRALFEKVGKVDAVVSAAGK 65 (199)
T ss_pred CceEecCCChHHHHHHHHhcCCCCEEEECCCC
Confidence 357899999999998877 78999999984
No 305
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=60.86 E-value=8.6 Score=35.00 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=26.0
Q ss_pred CceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 9 SEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 9 ~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
...+++|+.|++++.++++ +.|++||++|-.
T Consensus 58 ~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~ 95 (261)
T PRK08690 58 ELVFRCDVASDDEINQVFADLGKHWDGLDGLVHSIGFA 95 (261)
T ss_pred ceEEECCCCCHHHHHHHHHHHHHHhCCCcEEEECCccC
Confidence 4578999999999988774 689999999843
No 306
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=60.74 E-value=10 Score=36.43 Aligned_cols=42 Identities=17% Similarity=0.212 Sum_probs=33.8
Q ss_pred CHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCC
Q 018848 18 NEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDD 64 (349)
Q Consensus 18 d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~ 64 (349)
|++++. .+++|+||.|+|.|.. ...+...+++|+.-||++..
T Consensus 80 ~~~~~~--w~gvDiVle~tG~~~s---~~~a~~hl~aGak~V~iSap 121 (334)
T PRK08955 80 AIADTD--WSGCDVVIEASGVMKT---KALLQAYLDQGVKRVVVTAP 121 (334)
T ss_pred ChhhCC--ccCCCEEEEccchhhc---HHHHHHHHHCCCEEEEECCC
Confidence 555432 2499999999998865 47899999999999999964
No 307
>PRK06701 short chain dehydrogenase; Provisional
Probab=60.74 E-value=9.3 Score=35.48 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=27.5
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
+.++.++.+|+.|.+++.++++ +.|+||||+|.
T Consensus 95 ~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~~iD~lI~~Ag~ 134 (290)
T PRK06701 95 GVKCLLIPGDVSDEAFCKDAVEETVRELGRLDILVNNAAF 134 (290)
T ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 3457789999999999988775 57999999984
No 308
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=60.52 E-value=9.7 Score=36.29 Aligned_cols=30 Identities=23% Similarity=0.223 Sum_probs=26.8
Q ss_pred CCceEEEeCCCHHHHHHHhcC--CcEEEEccC
Q 018848 8 NSEFAEVNIYNEGSLLMALRD--VDLVVHAAG 37 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~~--~dvVIn~ag 37 (349)
+++++..|+.|.+++.+++++ +|+||||++
T Consensus 53 ~~~~~~~Dl~~~~~~~~~~~~~~~d~vih~A~ 84 (349)
T TIGR02622 53 KIEDHFGDIRDAAKLRKAIAEFKPEIVFHLAA 84 (349)
T ss_pred CceEEEccCCCHHHHHHHHhhcCCCEEEECCc
Confidence 567889999999999999985 599999998
No 309
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=60.39 E-value=9.8 Score=36.46 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=29.8
Q ss_pred CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCC
Q 018848 28 DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCD 63 (349)
Q Consensus 28 ~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~ 63 (349)
++|+|+.|+|.|.. ...+...+++|+.-||++.
T Consensus 89 gvDiVle~tG~f~s---~~~a~~hl~aGak~V~iSa 121 (331)
T PRK15425 89 GVDVVAEATGLFLT---DETARKHITAGAKKVVMTG 121 (331)
T ss_pred CCCEEEEecchhhc---HHHHHHHHHCCCEEEEeCC
Confidence 89999999998865 4788999999999999995
No 310
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=60.34 E-value=9.1 Score=34.62 Aligned_cols=33 Identities=15% Similarity=0.143 Sum_probs=27.3
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
+.++.++++|+.|.+++.+++. +.|+|||++|-
T Consensus 67 g~~~~~~~~D~~~~~~i~~~~~~~~~~~g~id~li~~ag~ 106 (256)
T PRK12859 67 GVKVSSMELDLTQNDAPKELLNKVTEQLGYPHILVNNAAY 106 (256)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCcEEEECCCC
Confidence 4567788999999999988775 46999999983
No 311
>PRK07831 short chain dehydrogenase; Provisional
Probab=60.15 E-value=9.6 Score=34.47 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=26.8
Q ss_pred CCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
.++.++++|+.|++++.++++ +.|+||||+|-
T Consensus 69 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag~ 107 (262)
T PRK07831 69 GRVEAVVCDVTSEAQVDALIDAAVERLGRLDVLVNNAGL 107 (262)
T ss_pred ceEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 357889999999998887775 57999999983
No 312
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=60.14 E-value=11 Score=36.14 Aligned_cols=50 Identities=16% Similarity=0.128 Sum_probs=37.5
Q ss_pred eEEEeCCCHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCC
Q 018848 11 FAEVNIYNEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCD 63 (349)
Q Consensus 11 ~~~~Dv~d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~ 63 (349)
....+-.|++++.=---++|+|+.|+|.|.. ...+...+++|+.-||++.
T Consensus 73 I~v~~~~dp~~~~W~~~gvDiV~e~tG~f~s---~~~a~~hl~aGak~V~iSa 122 (337)
T PRK07403 73 IKCVSDRNPLNLPWKEWGIDLIIESTGVFVT---KEGASKHIQAGAKKVLITA 122 (337)
T ss_pred EEEEEcCCcccCChhhcCCCEEEeccchhhh---HHHHHHHhhCCcEEEEeCC
Confidence 3444445666554222399999999998865 4788999999999999996
No 313
>PRK05599 hypothetical protein; Provisional
Probab=60.08 E-value=9.9 Score=34.23 Aligned_cols=32 Identities=13% Similarity=0.161 Sum_probs=26.6
Q ss_pred CCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 8 NSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
++.++++|+.|++++.+++. +.|++||++|.+
T Consensus 50 ~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nag~~ 88 (246)
T PRK05599 50 SVHVLSFDAQDLDTHRELVKQTQELAGEISLAVVAFGIL 88 (246)
T ss_pred ceEEEEcccCCHHHHHHHHHHHHHhcCCCCEEEEecCcC
Confidence 47789999999999887654 679999999854
No 314
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=59.98 E-value=53 Score=27.12 Aligned_cols=76 Identities=25% Similarity=0.227 Sum_probs=51.9
Q ss_pred HHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchhHHH
Q 018848 22 LLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVSNVM 99 (349)
Q Consensus 22 l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls~ll 99 (349)
+.+.++ +++.|.-.-|... ..+.+++.+.+..||....|....--. +..++..|...+.-+...||+.|.+
T Consensus 3 i~~~L~~~Gv~~vfg~pg~~~----~~l~~~~~~~~~~~i~~~~E~~A~~~A---~g~~~~~~~~~v~~~~~gpG~~n~~ 75 (155)
T cd07035 3 LVEALKAEGVDHVFGVPGGAI----LPLLDALARSGIRYILVRHEQGAVGMA---DGYARATGKPGVVLVTSGPGLTNAV 75 (155)
T ss_pred HHHHHHHcCCCEEEECCCCch----HHHHHHhccCCCEEEEeCCHHHHHHHH---HHHHHHHCCCEEEEEcCCCcHHHHH
Confidence 344444 7888887766322 588888878889999998876543322 3335556666777777889999988
Q ss_pred HHHHH
Q 018848 100 AAELV 104 (349)
Q Consensus 100 a~~~~ 104 (349)
..-.-
T Consensus 76 ~~l~~ 80 (155)
T cd07035 76 TGLAN 80 (155)
T ss_pred HHHHH
Confidence 76544
No 315
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=59.93 E-value=6.8 Score=33.73 Aligned_cols=35 Identities=29% Similarity=0.518 Sum_probs=23.0
Q ss_pred cCCCCceEEEeCCCHHHHHHHhcC-------CcEEEEccCCC
Q 018848 5 LGKNSEFAEVNIYNEGSLLMALRD-------VDLVVHAAGPF 39 (349)
Q Consensus 5 l~~~~~~~~~Dv~d~~~l~~~~~~-------~dvVIn~agP~ 39 (349)
.+.++.++++|+.|++++.+++.. .+-||+|+|..
T Consensus 51 ~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~i~gVih~ag~~ 92 (181)
T PF08659_consen 51 AGARVEYVQCDVTDPEAVAAALAQLRQRFGPIDGVIHAAGVL 92 (181)
T ss_dssp TT-EEEEEE--TTSHHHHHHHHHTSHTTSS-EEEEEE-----
T ss_pred CCCceeeeccCccCHHHHHHHHHHHHhccCCcceeeeeeeee
Confidence 366789999999999999999864 46799999853
No 316
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=59.79 E-value=14 Score=35.65 Aligned_cols=48 Identities=17% Similarity=0.160 Sum_probs=36.3
Q ss_pred EEeCCCHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCC
Q 018848 13 EVNIYNEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCD 63 (349)
Q Consensus 13 ~~Dv~d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~ 63 (349)
...-.|++++.=--.++|+|+.|+|.|.. ...+...+++|+.-||++.
T Consensus 74 v~~~~dp~~~~W~~~gvDiVle~tG~f~s---~~~a~~hl~aGak~V~iSa 121 (343)
T PRK07729 74 LLNNRDPKELPWTDLGIDIVIEATGKFNS---KEKAILHVEAGAKKVILTA 121 (343)
T ss_pred EEEcCChhhCcccccCCCEEEEccchhhh---HhHHHHHHHcCCeEEEeCC
Confidence 33334666554222399999999998866 4788999999999999995
No 317
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=59.76 E-value=7.5 Score=35.01 Aligned_cols=33 Identities=27% Similarity=0.339 Sum_probs=27.1
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
+.++.++.+|+.|.+++.++++ +.|+||||+|.
T Consensus 59 ~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~~d~li~~ag~ 98 (255)
T PRK06113 59 GGQAFACRCDITSEQELSALADFALSKLGKVDILVNNAGG 98 (255)
T ss_pred CCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 3457788999999999888765 56999999984
No 318
>PLN02572 UDP-sulfoquinovose synthase
Probab=59.70 E-value=11 Score=37.70 Aligned_cols=31 Identities=26% Similarity=0.207 Sum_probs=27.7
Q ss_pred CCceEEEeCCCHHHHHHHhc--CCcEEEEccCC
Q 018848 8 NSEFAEVNIYNEGSLLMALR--DVDLVVHAAGP 38 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~--~~dvVIn~agP 38 (349)
++++++.|+.|.+.+.++++ ++|+|||+++.
T Consensus 114 ~v~~v~~Dl~d~~~v~~~l~~~~~D~ViHlAa~ 146 (442)
T PLN02572 114 EIELYVGDICDFEFLSEAFKSFEPDAVVHFGEQ 146 (442)
T ss_pred cceEEECCCCCHHHHHHHHHhCCCCEEEECCCc
Confidence 58899999999999999998 58999999953
No 319
>PRK07904 short chain dehydrogenase; Provisional
Probab=59.53 E-value=11 Score=34.28 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=25.4
Q ss_pred CCceEEEeCCCHHHHHHHhc------CCcEEEEccCC
Q 018848 8 NSEFAEVNIYNEGSLLMALR------DVDLVVHAAGP 38 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~------~~dvVIn~agP 38 (349)
+++++++|+.|++++.++++ +.|++||++|-
T Consensus 61 ~v~~~~~D~~~~~~~~~~~~~~~~~g~id~li~~ag~ 97 (253)
T PRK07904 61 SVEVIDFDALDTDSHPKVIDAAFAGGDVDVAIVAFGL 97 (253)
T ss_pred ceEEEEecCCChHHHHHHHHHHHhcCCCCEEEEeeec
Confidence 67899999999988665554 79999999984
No 320
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=59.42 E-value=14 Score=35.02 Aligned_cols=74 Identities=15% Similarity=0.209 Sum_probs=42.4
Q ss_pred HHHHHHHcCCCeEecCCChh--HHHHHHHHHHHHHH----cCCcEEecCCcCcc---h---hHHHHHHHHHHHhc--ccC
Q 018848 47 VLEAAIETKTAYIDVCDDTI--YSQRAKSFKDRAIA----ANIPAITTGGIYPG---V---SNVMAAELVRVARN--ESK 112 (349)
Q Consensus 47 v~~aci~~Gv~YvDi~~~~~--~~~~~~~l~~~a~~----~g~~~v~~~G~~PG---l---s~lla~~~~~~l~~--~~~ 112 (349)
++++|+++|++|+|+++.+. -.+++ +.+..+. ..+.+-.=.|+.++ . -++-..++.+.+.. +++
T Consensus 38 il~~A~d~Gin~~DTA~~Yg~g~sE~i--lG~~l~~~~~Rd~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RL 115 (316)
T COG0667 38 ILDAALDAGINFFDTADVYGDGRSEEI--LGEALKERGRRDKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRL 115 (316)
T ss_pred HHHHHHHcCCCEEECccccCCCchHHH--HHHHHhccCCCCeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999998765 34544 2222222 33555566666653 1 22223333332221 223
Q ss_pred CCCcEEEEEEe
Q 018848 113 GEPERLRFSYY 123 (349)
Q Consensus 113 ~~v~~i~i~~~ 123 (349)
.++.||++++
T Consensus 116 -gtd~IDl~~i 125 (316)
T COG0667 116 -GTDYIDLYQL 125 (316)
T ss_pred -CCCceeEEEe
Confidence 3678998765
No 321
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=59.41 E-value=16 Score=33.94 Aligned_cols=70 Identities=19% Similarity=0.112 Sum_probs=43.4
Q ss_pred HHHHHhcCCcEEEEccCCCCCCCcHHHH------HHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcc
Q 018848 21 SLLMALRDVDLVVHAAGPFQQAPKCTVL------EAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPG 94 (349)
Q Consensus 21 ~l~~~~~~~dvVIn~agP~~~~~~~~v~------~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PG 94 (349)
+..++++++|+||-|+.|.... ..++ ..++..|...||.+.-.+ ....++.+.+++.|+.+ +.+-...|
T Consensus 45 s~~~~~~~advVil~vp~~~~~--~~v~~g~~~l~~~~~~g~~vid~st~~p--~~~~~~~~~~~~~g~~~-vdaPv~Gg 119 (288)
T TIGR01692 45 SPAEAAEGADRVITMLPAGQHV--ISVYSGDEGILPKVAKGSLLIDCSTIDP--DSARKLAELAAAHGAVF-MDAPVSGG 119 (288)
T ss_pred CHHHHHhcCCEEEEeCCChHHH--HHHHcCcchHhhcCCCCCEEEECCCCCH--HHHHHHHHHHHHcCCcE-EECCCCCC
Confidence 4556788999999999754432 1333 234567888999885432 23334566677788764 44444444
Q ss_pred h
Q 018848 95 V 95 (349)
Q Consensus 95 l 95 (349)
.
T Consensus 120 ~ 120 (288)
T TIGR01692 120 V 120 (288)
T ss_pred H
Confidence 3
No 322
>PLN02775 Probable dihydrodipicolinate reductase
Probab=59.35 E-value=73 Score=29.88 Aligned_cols=70 Identities=10% Similarity=0.025 Sum_probs=49.5
Q ss_pred CCc-EEEEccCCCCCCCcHHHHHHHHHcCCCeEe-cCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchhHH--HHHHH
Q 018848 28 DVD-LVVHAAGPFQQAPKCTVLEAAIETKTAYID-VCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVSNV--MAAEL 103 (349)
Q Consensus 28 ~~d-vVIn~agP~~~~~~~~v~~aci~~Gv~YvD-i~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls~l--la~~~ 103 (349)
..| ++|+=.-|... ...++.|+++|++.|- +||-.+ ++ +.+.++++++.++.+.-++-|+.-+ ++..+
T Consensus 79 ~~~~VvIDFT~P~a~---~~~~~~~~~~g~~~VvGTTG~~~--e~---l~~~~~~~~i~vv~apNfSiGv~ll~~l~~~a 150 (286)
T PLN02775 79 YPNLIVVDYTLPDAV---NDNAELYCKNGLPFVMGTTGGDR--DR---LLKDVEESGVYAVIAPQMGKQVVAFQAAMEIM 150 (286)
T ss_pred CCCEEEEECCChHHH---HHHHHHHHHCCCCEEEECCCCCH--HH---HHHHHhcCCccEEEECcccHHHHHHHHHHHHH
Confidence 578 99999988776 6889999999999987 445322 12 3344456788999998888887433 23444
Q ss_pred HH
Q 018848 104 VR 105 (349)
Q Consensus 104 ~~ 105 (349)
++
T Consensus 151 A~ 152 (286)
T PLN02775 151 AE 152 (286)
T ss_pred HH
Confidence 44
No 323
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=59.30 E-value=17 Score=32.95 Aligned_cols=42 Identities=19% Similarity=0.173 Sum_probs=22.1
Q ss_pred HHHHHHHhc-CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecC
Q 018848 19 EGSLLMALR-DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVC 62 (349)
Q Consensus 19 ~~~l~~~~~-~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~ 62 (349)
++.+.+++. ++|+||+|..-+.. . ..+.+.|.+.++++|...
T Consensus 92 ~~~~~~l~~~~~D~VvdaiD~~~~-k-~~L~~~c~~~~ip~I~s~ 134 (231)
T cd00755 92 PDNSEDLLGGDPDFVVDAIDSIRA-K-VALIAYCRKRKIPVISSM 134 (231)
T ss_pred HhHHHHHhcCCCCEEEEcCCCHHH-H-HHHHHHHHHhCCCEEEEe
Confidence 344555554 57888888752221 1 245555555555555543
No 324
>PF13466 STAS_2: STAS domain
Probab=59.12 E-value=26 Score=25.37 Aligned_cols=40 Identities=20% Similarity=0.173 Sum_probs=25.5
Q ss_pred CCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchhHHH
Q 018848 55 KTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVSNVM 99 (349)
Q Consensus 55 Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls~ll 99 (349)
++.|+|.++ ..-+......+++.|..+.+ .|..|.+..++
T Consensus 35 ~v~~iDsag----l~lL~~~~~~~~~~g~~~~l-~~~~~~~~~ll 74 (80)
T PF13466_consen 35 GVEFIDSAG----LQLLLAAARRARARGRQLRL-TGPSPALRRLL 74 (80)
T ss_pred CCCeecHHH----HHHHHHHHHHHHHCCCeEEE-EcCCHHHHHHH
Confidence 356677664 44455677778788876665 55777665544
No 325
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=59.06 E-value=7.6 Score=34.93 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=27.6
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
+.++.++++|+.|++++.++++ +.|+|||++|.
T Consensus 59 ~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 98 (256)
T PRK06124 59 GGAAEALAFDIADEEAVAAAFARIDAEHGRLDILVNNVGA 98 (256)
T ss_pred CCceEEEEccCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 4568899999999999888776 45999999984
No 326
>PRK07201 short chain dehydrogenase; Provisional
Probab=58.91 E-value=15 Score=38.14 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=26.2
Q ss_pred CCCceEEEeCCCH------HHHHHHhcCCcEEEEccCCCC
Q 018848 7 KNSEFAEVNIYNE------GSLLMALRDVDLVVHAAGPFQ 40 (349)
Q Consensus 7 ~~~~~~~~Dv~d~------~~l~~~~~~~dvVIn~agP~~ 40 (349)
.+++.++.|+.|+ +.+.++ +++|+||||++.+.
T Consensus 51 ~~v~~~~~Dl~~~~~~~~~~~~~~l-~~~D~Vih~Aa~~~ 89 (657)
T PRK07201 51 DRVVPLVGDLTEPGLGLSEADIAEL-GDIDHVVHLAAIYD 89 (657)
T ss_pred CcEEEEecccCCccCCcCHHHHHHh-cCCCEEEECceeec
Confidence 4678899999983 566666 89999999998543
No 327
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=58.79 E-value=11 Score=33.96 Aligned_cols=32 Identities=22% Similarity=0.423 Sum_probs=26.4
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAG 37 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~ag 37 (349)
+.++.++++|+.|++++.+++. +.|+||||+|
T Consensus 60 ~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~id~vi~~ag 98 (259)
T PRK08213 60 GIDALWIAADVADEADIERLAEETLERFGHVDILVNNAG 98 (259)
T ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 3456789999999999977664 5799999998
No 328
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=58.61 E-value=8.8 Score=36.15 Aligned_cols=29 Identities=17% Similarity=0.350 Sum_probs=23.5
Q ss_pred CCCceEEEeCCCHHHHHHHhcCCcEEEEccC
Q 018848 7 KNSEFAEVNIYNEGSLLMALRDVDLVVHAAG 37 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~~~dvVIn~ag 37 (349)
..+++.+=-++|-+++.+ .++||||||+|
T Consensus 164 ~Gvef~~r~v~~l~E~~~--~~~DVivNCtG 192 (342)
T KOG3923|consen 164 NGVEFVQRRVESLEEVAR--PEYDVIVNCTG 192 (342)
T ss_pred cCcEEEEeeeccHHHhcc--CCCcEEEECCc
Confidence 457888888887766655 79999999998
No 329
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=58.45 E-value=7 Score=34.42 Aligned_cols=32 Identities=28% Similarity=0.325 Sum_probs=29.0
Q ss_pred CCceEEEeCCCHHHHHHHhcCC--cEEEEccCCC
Q 018848 8 NSEFAEVNIYNEGSLLMALRDV--DLVVHAAGPF 39 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~~~--dvVIn~agP~ 39 (349)
++++..+|+.|.+.+.+++++. |.|+++++..
T Consensus 43 ~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a~~~ 76 (236)
T PF01370_consen 43 NVEFVIGDLTDKEQLEKLLEKANIDVVIHLAAFS 76 (236)
T ss_dssp TEEEEESETTSHHHHHHHHHHHTESEEEEEBSSS
T ss_pred eEEEEEeeccccccccccccccCceEEEEeeccc
Confidence 5789999999999999999977 9999999864
No 330
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=58.37 E-value=28 Score=35.00 Aligned_cols=79 Identities=13% Similarity=0.140 Sum_probs=52.8
Q ss_pred HHHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchhH
Q 018848 20 GSLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVSN 97 (349)
Q Consensus 20 ~~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls~ 97 (349)
+-+.+.++ +++.|.--+| .-. .+++.||.+.|+.|||.-.|+...-...++.-.-.+-|++++. .-||+++
T Consensus 18 ~~vA~~Lk~~gVe~iFgiVG--ipV--~el~~aaqalGIk~I~~RnEqaA~yAA~A~gyLt~kpGV~lVv---sGPGl~h 90 (571)
T KOG1185|consen 18 ELVAAVLKAQGVEYIFGIVG--IPV--IELAVAAQALGIKFIGTRNEQAAVYAASAYGYLTGKPGVLLVV---SGPGLTH 90 (571)
T ss_pred HHHHHHHHHcCceEEEEEec--cch--HHHHHHHHHcCCeEeecccHHHHHHHHHHhhhhcCCCeEEEEe---cCChHHH
Confidence 34455565 7888888887 222 4899999999999999988775433332333333345555544 4699999
Q ss_pred HHHHHHHH
Q 018848 98 VMAAELVR 105 (349)
Q Consensus 98 lla~~~~~ 105 (349)
.++.-.-.
T Consensus 91 al~gv~NA 98 (571)
T KOG1185|consen 91 ALAGVANA 98 (571)
T ss_pred HHHHhhhh
Confidence 98875543
No 331
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=58.33 E-value=22 Score=26.72 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=28.0
Q ss_pred HHHHHhc--CCcEEEEccCCCCC----CCcHHHHHHHHHcCCCeE
Q 018848 21 SLLMALR--DVDLVVHAAGPFQQ----APKCTVLEAAIETKTAYI 59 (349)
Q Consensus 21 ~l~~~~~--~~dvVIn~agP~~~----~~~~~v~~aci~~Gv~Yv 59 (349)
.+.++++ +.|+|||...|+.. .+ ..+-++|++.+++|+
T Consensus 46 ~i~~~i~~g~id~VIn~~~~~~~~~~~d~-~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 46 AILDLIKNGEIDLVINTLYPLGAQPHEDG-KALRRAAENIDIPGA 89 (90)
T ss_pred HHHHHhcCCCeEEEEECCCcCcceeccCc-HHHHHHHHHcCCCee
Confidence 3555665 88999998765322 24 689999999999986
No 332
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=58.20 E-value=11 Score=34.14 Aligned_cols=33 Identities=15% Similarity=0.315 Sum_probs=27.3
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
+.++.++.+|+.|.+++.++++ +.|++||++|.
T Consensus 56 ~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id~lv~~ag~ 95 (261)
T PRK08936 56 GGEAIAVKGDVTVESDVVNLIQTAVKEFGTLDVMINNAGI 95 (261)
T ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 3456788999999999888775 57999999984
No 333
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=58.08 E-value=11 Score=36.01 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=30.3
Q ss_pred CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCC
Q 018848 28 DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDD 64 (349)
Q Consensus 28 ~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~ 64 (349)
++|+|+.|+|.|.. ...+.+.+++|+.-||++..
T Consensus 90 gvDiVle~tG~~~s---~~~a~~hl~~Gak~V~iSap 123 (327)
T TIGR01534 90 GVDIVIECTGKFRD---KEKLEGHLEAGAKKVLISAP 123 (327)
T ss_pred CCCEEEEccchhhc---HHHHHHHhhCCCEEEEeCCC
Confidence 89999999998865 47889999999999999953
No 334
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=57.98 E-value=8.7 Score=36.92 Aligned_cols=49 Identities=20% Similarity=0.223 Sum_probs=35.8
Q ss_pred EEeCCCHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChh
Q 018848 13 EVNIYNEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTI 66 (349)
Q Consensus 13 ~~Dv~d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~ 66 (349)
.+++.+.+.. + ++++|+|+-|+++. .. ..++..+.++|+..||.+++..
T Consensus 53 ~l~~~~~~~~-~-~~~vD~vFla~p~~--~s-~~~v~~~~~~G~~VIDlS~~fR 101 (336)
T PRK05671 53 NLRVREVDSF-D-FSQVQLAFFAAGAA--VS-RSFAEKARAAGCSVIDLSGALP 101 (336)
T ss_pred ceEEeeCChH-H-hcCCCEEEEcCCHH--HH-HHHHHHHHHCCCeEEECchhhc
Confidence 3444443332 2 37999999998643 34 5899999999999999998763
No 335
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=57.84 E-value=56 Score=33.44 Aligned_cols=79 Identities=19% Similarity=0.109 Sum_probs=58.8
Q ss_pred HHHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchhH
Q 018848 20 GSLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVSN 97 (349)
Q Consensus 20 ~~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls~ 97 (349)
+.|.+.++ +++.|.-+-|.+. .++.+++.+.|+.||....|....--. +..++..|.+.+.-+-..||++|
T Consensus 5 ~~l~~~L~~~Gv~~vFg~pG~~~----~~l~~al~~~~i~~v~~~hE~~A~~~A---dgyar~sg~~gv~~~t~GpG~~n 77 (548)
T PRK08978 5 QWVVHALRAQGVDTVFGYPGGAI----MPVYDALYDGGVEHLLCRHEQGAAMAA---IGYARATGKVGVCIATSGPGATN 77 (548)
T ss_pred HHHHHHHHHcCCCEEEeCCCcch----HHHHHHHHhcCCeEEEeccHHHHHHHH---HHHHHHhCCCEEEEECCCCcHHH
Confidence 45666665 8899998877433 589999888899999998876432222 44577788778888888999999
Q ss_pred HHHHHHHH
Q 018848 98 VMAAELVR 105 (349)
Q Consensus 98 lla~~~~~ 105 (349)
++..-+-.
T Consensus 78 ~~~~l~~A 85 (548)
T PRK08978 78 LITGLADA 85 (548)
T ss_pred HHHHHHHH
Confidence 98775443
No 336
>PLN02686 cinnamoyl-CoA reductase
Probab=57.81 E-value=9.1 Score=36.99 Aligned_cols=32 Identities=19% Similarity=0.048 Sum_probs=28.7
Q ss_pred CCceEEEeCCCHHHHHHHhcCCcEEEEccCCC
Q 018848 8 NSEFAEVNIYNEGSLLMALRDVDLVVHAAGPF 39 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~ 39 (349)
++++++.|+.|.+++.++++++|.|++++++.
T Consensus 108 ~~~~v~~Dl~d~~~l~~~i~~~d~V~hlA~~~ 139 (367)
T PLN02686 108 GIWTVMANLTEPESLHEAFDGCAGVFHTSAFV 139 (367)
T ss_pred ceEEEEcCCCCHHHHHHHHHhccEEEecCeee
Confidence 47788999999999999999999999998754
No 337
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=57.75 E-value=58 Score=31.46 Aligned_cols=97 Identities=14% Similarity=0.136 Sum_probs=55.8
Q ss_pred cCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHH-------HHHHHHHHHHHH-cCCcEEecCCcCcchhHH
Q 018848 27 RDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYS-------QRAKSFKDRAIA-ANIPAITTGGIYPGVSNV 98 (349)
Q Consensus 27 ~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~-------~~~~~l~~~a~~-~g~~~v~~~G~~PGls~l 98 (349)
+++|+|+-|++.. .. ..++..+.++|+..||.+++..+. .++.. +..++ .+ +|.+-|..+-..-+
T Consensus 67 ~~~Divf~a~~~~--~s-~~~~~~~~~~G~~VID~Ss~fR~~~~vplvvPEvN~--e~i~~~~~--iIanPnC~tt~~~l 139 (347)
T PRK06728 67 EGVDIAFFSAGGE--VS-RQFVNQAVSSGAIVIDNTSEYRMAHDVPLVVPEVNA--HTLKEHKG--IIAVPNCSALQMVT 139 (347)
T ss_pred cCCCEEEECCChH--HH-HHHHHHHHHCCCEEEECchhhcCCCCCCeEeCCcCH--HHHhccCC--EEECCCCHHHHHHH
Confidence 6899999999633 34 488888999999999999865321 11110 11122 24 55554544443333
Q ss_pred HHHHHHHHHhcccCCCCcEEEEEEeecCCCCCchhhHHH
Q 018848 99 MAAELVRVARNESKGEPERLRFSYYTAGTGGAGPTILAT 137 (349)
Q Consensus 99 la~~~~~~l~~~~~~~v~~i~i~~~~~g~~~~~~~~~~~ 137 (349)
..+-+.+ ...+++|.+.-++ +.++.|...+..
T Consensus 140 aL~PL~~------~~~i~~v~V~t~q-avSGAG~~gv~e 171 (347)
T PRK06728 140 ALQPIRK------VFGLERIIVSTYQ-AVSGSGIHAIQE 171 (347)
T ss_pred HHHHHHH------cCCccEEEEEEee-cccccchhhHHH
Confidence 3333332 2346888776553 444455444444
No 338
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=57.58 E-value=11 Score=33.49 Aligned_cols=33 Identities=15% Similarity=0.134 Sum_probs=27.0
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
+.++....+|+.|++++.++++ +.|+|||++|.
T Consensus 55 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 94 (252)
T PRK06077 55 GGEGIGVLADVSTREGCETLAKATIDRYGVADILVNNAGL 94 (252)
T ss_pred CCeeEEEEeccCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 3456688899999999888776 57999999983
No 339
>PRK08177 short chain dehydrogenase; Provisional
Probab=57.39 E-value=12 Score=32.98 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=27.0
Q ss_pred CCceEEEeCCCHHHHHHHhc-----CCcEEEEccCCC
Q 018848 8 NSEFAEVNIYNEGSLLMALR-----DVDLVVHAAGPF 39 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~-----~~dvVIn~agP~ 39 (349)
++.+.++|+.|+++++++++ +.|+||+++|.+
T Consensus 46 ~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~~ag~~ 82 (225)
T PRK08177 46 GVHIEKLDMNDPASLDQLLQRLQGQRFDLLFVNAGIS 82 (225)
T ss_pred ccceEEcCCCCHHHHHHHHHHhhcCCCCEEEEcCccc
Confidence 46788999999998888877 589999999853
No 340
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=57.22 E-value=1.3e+02 Score=27.72 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=27.5
Q ss_pred HHHHHHHHHcCCCeEe-cCCChhHHHHHHHHHHHHHHcCCcEEec
Q 018848 45 CTVLEAAIETKTAYID-VCDDTIYSQRAKSFKDRAIAANIPAITT 88 (349)
Q Consensus 45 ~~v~~aci~~Gv~YvD-i~~~~~~~~~~~~l~~~a~~~g~~~v~~ 88 (349)
+.++++|+++|+++|. ++++..- +++ -+.+++.|+.+|..
T Consensus 86 ~~v~e~al~~G~~iINdisg~~~~-~~~---~~l~~~~~~~vV~m 126 (257)
T cd00739 86 AEVARAALEAGADIINDVSGGSDD-PAM---LEVAAEYGAPLVLM 126 (257)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCC-hHH---HHHHHHcCCCEEEE
Confidence 6999999999999997 7775411 233 23355677766663
No 341
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=57.16 E-value=8.6 Score=34.24 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=26.8
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
+.++.++++|+.|++++.++++ +.|+|||++|-
T Consensus 53 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 92 (253)
T PRK08217 53 GTEVRGYAANVTDEEDVEATFAQIAEDFGQLNGLINNAGI 92 (253)
T ss_pred CCceEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 4567889999999988877665 36999999984
No 342
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=57.14 E-value=17 Score=33.25 Aligned_cols=61 Identities=15% Similarity=0.117 Sum_probs=40.9
Q ss_pred cccC-CCCceEEEeCCCH-----HHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCC
Q 018848 3 STLG-KNSEFAEVNIYNE-----GSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDD 64 (349)
Q Consensus 3 ~~l~-~~~~~~~~Dv~d~-----~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~ 64 (349)
++|+ ++.-|+-+-+.|. +.|..++..-|+||+.-.-++.-. .+-.+...+.|+||+|+.-+
T Consensus 55 ~~L~~pr~vWlMvPag~it~~vi~~la~~L~~GDivIDGGNS~y~Ds-~rr~~~l~~kgi~flD~GTS 121 (300)
T COG1023 55 AKLSAPRIVWLMVPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDS-LRRAKLLAEKGIHFLDVGTS 121 (300)
T ss_pred HhcCCCcEEEEEccCCCchHHHHHHHHhhcCCCCEEEECCccchHHH-HHHHHHHHhcCCeEEeccCC
Confidence 4454 4555665555532 467777888999999866555433 45555677999999998754
No 343
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=57.13 E-value=1.2e+02 Score=27.84 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=26.5
Q ss_pred HHHHHHHHHcCCCeEe-cCCChhHHHHHHHHHHHHHHcCCcEEec
Q 018848 45 CTVLEAAIETKTAYID-VCDDTIYSQRAKSFKDRAIAANIPAITT 88 (349)
Q Consensus 45 ~~v~~aci~~Gv~YvD-i~~~~~~~~~~~~l~~~a~~~g~~~v~~ 88 (349)
+.++++|+++|+++|. ++++. .+++ -+.+++.|..+|..
T Consensus 85 ~~vi~~al~~G~~iINsis~~~--~~~~---~~l~~~~~~~vV~m 124 (257)
T TIGR01496 85 AEVARAALEAGADIINDVSGGQ--DPAM---LEVAAEYGVPLVLM 124 (257)
T ss_pred HHHHHHHHHcCCCEEEECCCCC--Cchh---HHHHHHcCCcEEEE
Confidence 6999999999999997 55542 2223 23356677666663
No 344
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=56.79 E-value=18 Score=37.02 Aligned_cols=31 Identities=26% Similarity=0.329 Sum_probs=28.1
Q ss_pred CCCceEEEeCCCHHHHHHHhcC--CcEEEEccC
Q 018848 7 KNSEFAEVNIYNEGSLLMALRD--VDLVVHAAG 37 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~~--~dvVIn~ag 37 (349)
.+..+.-.|+.|.+.+.+++++ +|+|.+||-
T Consensus 302 ~~~~~~igdVrD~~~~~~~~~~~kvd~VfHAAA 334 (588)
T COG1086 302 LKLRFYIGDVRDRDRVERAMEGHKVDIVFHAAA 334 (588)
T ss_pred cceEEEecccccHHHHHHHHhcCCCceEEEhhh
Confidence 4577889999999999999998 999999995
No 345
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=56.75 E-value=8.1 Score=34.90 Aligned_cols=32 Identities=19% Similarity=0.186 Sum_probs=25.5
Q ss_pred CCCceEEEeCCCHHHHHHHhcC-----------CcEEEEccCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALRD-----------VDLVVHAAGP 38 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~~-----------~dvVIn~agP 38 (349)
.++.++++|+.|.+++.++++. .|+|||++|-
T Consensus 55 ~~v~~~~~Dl~~~~~v~~~~~~~~~~~g~~~~~~~~lv~nAG~ 97 (256)
T TIGR01500 55 LRVVRVSLDLGAEAGLEQLLKALRELPRPKGLQRLLLINNAGT 97 (256)
T ss_pred ceEEEEEeccCCHHHHHHHHHHHHhccccCCCceEEEEeCCcc
Confidence 3578899999999998887752 2589999983
No 346
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=56.72 E-value=37 Score=31.83 Aligned_cols=63 Identities=14% Similarity=0.174 Sum_probs=39.2
Q ss_pred HHHhcCCcEEEEccCCCCCCCcHHHHHHHH----------HcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcC
Q 018848 23 LMALRDVDLVVHAAGPFQQAPKCTVLEAAI----------ETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIY 92 (349)
Q Consensus 23 ~~~~~~~dvVIn~agP~~~~~~~~v~~aci----------~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~ 92 (349)
+++++++|+||.|++.. .-++..+ +-|.-+||.|.-.+ +...++.+.+++.|..++ .+=.+
T Consensus 52 ~eaa~~aDvVitmv~~~------~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp--~~a~~~a~~~~~~G~~~l-DAPVs 122 (286)
T COG2084 52 AEAAAEADVVITMLPDD------AAVRAVLFGENGLLEGLKPGAIVIDMSTISP--ETARELAAALAAKGLEFL-DAPVS 122 (286)
T ss_pred HHHHHhCCEEEEecCCH------HHHHHHHhCccchhhcCCCCCEEEECCCCCH--HHHHHHHHHHHhcCCcEE-ecCcc
Confidence 45777999999999632 3333333 24888999886443 223356777788887544 33344
Q ss_pred cc
Q 018848 93 PG 94 (349)
Q Consensus 93 PG 94 (349)
.|
T Consensus 123 Gg 124 (286)
T COG2084 123 GG 124 (286)
T ss_pred CC
Confidence 33
No 347
>PRK07201 short chain dehydrogenase; Provisional
Probab=56.60 E-value=12 Score=39.06 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=28.5
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
+.++.++++|+.|.+++.++++ ++|+|||++|-
T Consensus 419 ~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~li~~Ag~ 458 (657)
T PRK07201 419 GGTAHAYTCDLTDSAAVDHTVKDILAEHGHVDYLVNNAGR 458 (657)
T ss_pred CCcEEEEEecCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 4567889999999999988876 68999999984
No 348
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=56.59 E-value=14 Score=35.31 Aligned_cols=87 Identities=15% Similarity=0.053 Sum_probs=51.5
Q ss_pred hcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHH-------HHHHHHHHHHHHc-CCcEEecCCcCcchhH
Q 018848 26 LRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYS-------QRAKSFKDRAIAA-NIPAITTGGIYPGVSN 97 (349)
Q Consensus 26 ~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~-------~~~~~l~~~a~~~-g~~~v~~~G~~PGls~ 97 (349)
++++|+|+.|+|-+.. ..++...+++|+..||.+++..+- ..+ .++..+.+ ...+|.+.|..+--.-
T Consensus 61 ~~~vDvVf~A~g~g~s---~~~~~~~~~~G~~VIDlS~~~R~~~~~p~~lpev--n~~~i~~~~~~~iVanp~C~~t~~~ 135 (334)
T PRK14874 61 FSGVDIALFSAGGSVS---KKYAPKAAAAGAVVIDNSSAFRMDPDVPLVVPEV--NPEALAEHRKKGIIANPNCSTIQMV 135 (334)
T ss_pred HcCCCEEEECCChHHH---HHHHHHHHhCCCEEEECCchhhcCCCCCeEcCCc--CHHHHhhhhcCCeEECccHHHHHHH
Confidence 3699999999974433 588889999999999999864221 111 11111111 0137777766665544
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEEEe
Q 018848 98 VMAAELVRVARNESKGEPERLRFSYY 123 (349)
Q Consensus 98 lla~~~~~~l~~~~~~~v~~i~i~~~ 123 (349)
+..+-+.+. ..++++.+.-+
T Consensus 136 l~l~pL~~~------~~i~~i~vtt~ 155 (334)
T PRK14874 136 VALKPLHDA------AGIKRVVVSTY 155 (334)
T ss_pred HHHHHHHHh------cCceEEEEEEE
Confidence 444444432 34666665443
No 349
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=56.53 E-value=15 Score=36.60 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=37.4
Q ss_pred eEEEeCCCHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCC
Q 018848 11 FAEVNIYNEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCD 63 (349)
Q Consensus 11 ~~~~Dv~d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~ 63 (349)
....+..|+.++.=--.++|+||.|+|.|.. ...+...+++|+.-||++.
T Consensus 148 I~V~~~~dp~~l~W~~~gVDiViE~TG~f~s---~e~a~~hl~aGAkkV~iSA 197 (442)
T PLN02237 148 IKVVSNRDPLKLPWAELGIDIVIEGTGVFVD---GPGAGKHIQAGAKKVIITA 197 (442)
T ss_pred EEEEEcCCchhCChhhcCCCEEEEccChhhh---HHHHHHHHhCCCEEEEECC
Confidence 3444555655543222499999999998876 5788999999999999994
No 350
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=56.45 E-value=12 Score=36.02 Aligned_cols=44 Identities=20% Similarity=0.148 Sum_probs=34.3
Q ss_pred CHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCC
Q 018848 18 NEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDD 64 (349)
Q Consensus 18 d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~ 64 (349)
|++.+.=--.++|+|+.|+|.|.. ...+..++++|+.-||++..
T Consensus 81 ~p~~~~w~~~gvDiVle~tG~~~s---~~~a~~~l~aGAk~V~iSap 124 (336)
T PRK13535 81 DIASLPWRELGVDVVLDCTGVYGS---REDGEAHIAAGAKKVLFSHP 124 (336)
T ss_pred CcccCcccccCCCEEEEccchhhh---HHHHHHHHHcCCEEEEecCC
Confidence 555442111499999999998865 58899999999999999964
No 351
>PRK06841 short chain dehydrogenase; Provisional
Probab=56.35 E-value=14 Score=33.09 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=26.8
Q ss_pred CCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 8 NSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
++..+++|+.|++++.++++ +.|+||||+|..
T Consensus 62 ~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 100 (255)
T PRK06841 62 NAKGLVCDVSDSQSVEAAVAAVISAFGRIDILVNSAGVA 100 (255)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 45689999999999988775 579999999853
No 352
>PRK07035 short chain dehydrogenase; Provisional
Probab=56.30 E-value=12 Score=33.58 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=26.5
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAG 37 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~ag 37 (349)
+.++..+++|+.|.+++.++++ +.|+|||++|
T Consensus 56 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ag 94 (252)
T PRK07035 56 GGKAEALACHIGEMEQIDALFAHIRERHGRLDILVNNAA 94 (252)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 3456789999999998887765 5799999997
No 353
>PRK05993 short chain dehydrogenase; Provisional
Probab=56.28 E-value=9.1 Score=35.13 Aligned_cols=31 Identities=10% Similarity=0.094 Sum_probs=25.7
Q ss_pred CCceEEEeCCCHHHHHHHhc--------CCcEEEEccCC
Q 018848 8 NSEFAEVNIYNEGSLLMALR--------DVDLVVHAAGP 38 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~--------~~dvVIn~agP 38 (349)
+++++.+|+.|.+++.++++ +.|+|||++|.
T Consensus 48 ~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~li~~Ag~ 86 (277)
T PRK05993 48 GLEAFQLDYAEPESIAALVAQVLELSGGRLDALFNNGAY 86 (277)
T ss_pred CceEEEccCCCHHHHHHHHHHHHHHcCCCccEEEECCCc
Confidence 46789999999998877765 46999999974
No 354
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=56.27 E-value=1.1e+02 Score=28.05 Aligned_cols=41 Identities=20% Similarity=0.158 Sum_probs=26.5
Q ss_pred HHHHHHHHHcCCCeEe-cCCChhHHHHHHHHHHHHHHcCCcEEecC
Q 018848 45 CTVLEAAIETKTAYID-VCDDTIYSQRAKSFKDRAIAANIPAITTG 89 (349)
Q Consensus 45 ~~v~~aci~~Gv~YvD-i~~~~~~~~~~~~l~~~a~~~g~~~v~~~ 89 (349)
+.++++|+++|+++|. ++++..- +++ -+.+++.|+.+|...
T Consensus 86 ~~v~~aaL~~g~~iINdis~~~~~-~~~---~~l~~~~~~~vV~m~ 127 (258)
T cd00423 86 AEVAEAALKAGADIINDVSGGRGD-PEM---APLAAEYGAPVVLMH 127 (258)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCC-hHH---HHHHHHcCCCEEEEC
Confidence 6999999999999886 5554310 222 334556676666654
No 355
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=56.17 E-value=7.9 Score=31.89 Aligned_cols=34 Identities=26% Similarity=0.416 Sum_probs=26.9
Q ss_pred CCCCceEEEeCCCHHHHHHHhcC-------CcEEEEccCCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALRD-------VDLVVHAAGPF 39 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~~-------~dvVIn~agP~ 39 (349)
+.++..+.+|+.+++++.+++.. .|.|||++|..
T Consensus 52 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ag~~ 92 (180)
T smart00822 52 GAEVTVVACDVADRAALAAALAAIPARLGPLRGVIHAAGVL 92 (180)
T ss_pred CCeEEEEECCCCCHHHHHHHHHHHHHHcCCeeEEEEccccC
Confidence 34567889999999988887653 59999999853
No 356
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=56.15 E-value=59 Score=33.51 Aligned_cols=80 Identities=18% Similarity=0.154 Sum_probs=57.4
Q ss_pred HHHHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchh
Q 018848 19 EGSLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVS 96 (349)
Q Consensus 19 ~~~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls 96 (349)
.+.|.+.++ +++.|.-.-|.+. .++.+++.+.|..||....|....--. +..++..|...+.-+..-||++
T Consensus 19 ~~~i~~~L~~~Gv~~vFg~pG~~~----~~l~~al~~~~i~~i~~~hE~~A~~~A---~gyar~tg~~gv~~~t~GPG~~ 91 (571)
T PRK07710 19 AQMLIEALEKEGVEVIFGYPGGAV----LPLYDALYDCGIPHILTRHEQGAIHAA---EGYARISGKPGVVIATSGPGAT 91 (571)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcch----HHHHHHHHhcCCcEEEeCCHHHHHHHH---HHHHHHhCCCeEEEECCCccHH
Confidence 566777776 8899998777433 589999988899999876665432222 3446667766676677899999
Q ss_pred HHHHHHHHH
Q 018848 97 NVMAAELVR 105 (349)
Q Consensus 97 ~lla~~~~~ 105 (349)
|.+..-+-.
T Consensus 92 N~~~gl~~A 100 (571)
T PRK07710 92 NVVTGLADA 100 (571)
T ss_pred HHHHHHHHH
Confidence 998775443
No 357
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=55.98 E-value=28 Score=27.24 Aligned_cols=40 Identities=18% Similarity=0.345 Sum_probs=29.5
Q ss_pred HHHHHHhc--CCcEEEEccCCCC-C-CCcHHHHHHHHHcCCCeEe
Q 018848 20 GSLLMALR--DVDLVVHAAGPFQ-Q-APKCTVLEAAIETKTAYID 60 (349)
Q Consensus 20 ~~l~~~~~--~~dvVIn~agP~~-~-~~~~~v~~aci~~Gv~YvD 60 (349)
..+.++++ +.|+|||...+.. . .+ +.+-++|++.|++|+-
T Consensus 57 ~~i~~~i~~~~id~vIn~~~~~~~~~~~-~~iRR~Av~~~ipl~T 100 (110)
T cd01424 57 PNIVDLIKNGEIQLVINTPSGKRAIRDG-FSIRRAALEYKVPYFT 100 (110)
T ss_pred hhHHHHHHcCCeEEEEECCCCCccCccH-HHHHHHHHHhCCCEEe
Confidence 45666666 8899999854322 1 23 7899999999999983
No 358
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=55.92 E-value=14 Score=32.70 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=27.1
Q ss_pred CCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
.++..+.+|+.|.+++.++++ +.|.||+++|..
T Consensus 55 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 94 (248)
T PRK05557 55 GKALAVQGDVSDAESVERAVDEAKAEFGGVDILVNNAGIT 94 (248)
T ss_pred CceEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 456788889999999888765 679999999843
No 359
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=55.86 E-value=13 Score=33.71 Aligned_cols=30 Identities=17% Similarity=0.360 Sum_probs=25.0
Q ss_pred CceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 9 SEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 9 ~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
..++++|+.|.+++.++++ +.|++|||+|-
T Consensus 62 ~~~~~~D~~~~~~v~~~~~~~~~~~g~ld~lv~nAg~ 98 (258)
T PRK07533 62 PIFLPLDVREPGQLEAVFARIAEEWGRLDFLLHSIAF 98 (258)
T ss_pred ceEEecCcCCHHHHHHHHHHHHHHcCCCCEEEEcCcc
Confidence 4578999999999887764 57999999984
No 360
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=55.42 E-value=11 Score=34.19 Aligned_cols=31 Identities=16% Similarity=0.335 Sum_probs=23.0
Q ss_pred CCceEEEeCCCHHHHH----HHh-------cCCcEEEEccCC
Q 018848 8 NSEFAEVNIYNEGSLL----MAL-------RDVDLVVHAAGP 38 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~----~~~-------~~~dvVIn~agP 38 (349)
++.++.+|+.|.+++. +++ .++|+|||++|-
T Consensus 53 ~~~~~~~Dv~d~~~~~~~~~~~~~~~~~~~g~iD~lv~nAG~ 94 (267)
T TIGR02685 53 SAVTCQADLSNSATLFSRCEAIIDACFRAFGRCDVLVNNASA 94 (267)
T ss_pred ceEEEEccCCCchhhHHHHHHHHHHHHHccCCceEEEECCcc
Confidence 4557889999987553 332 368999999984
No 361
>PRK07023 short chain dehydrogenase; Provisional
Probab=55.20 E-value=12 Score=33.38 Aligned_cols=34 Identities=18% Similarity=0.255 Sum_probs=27.0
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-----------CCcEEEEccCCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-----------DVDLVVHAAGPF 39 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-----------~~dvVIn~agP~ 39 (349)
+.++.++++|+.|.+++.+++. ..|++|||+|..
T Consensus 44 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ag~~ 88 (243)
T PRK07023 44 GERLAEVELDLSDAAAAAAWLAGDLLAAFVDGASRVLLINNAGTV 88 (243)
T ss_pred CCeEEEEEeccCCHHHHHHHHHHHHHHHhccCCCceEEEEcCccc
Confidence 4567889999999999888542 468999999853
No 362
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=55.07 E-value=11 Score=29.96 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=28.4
Q ss_pred HHHHHHhc--CCcEEEEccCCCCC----CCcHHHHHHHHHcCCCeE
Q 018848 20 GSLLMALR--DVDLVVHAAGPFQQ----APKCTVLEAAIETKTAYI 59 (349)
Q Consensus 20 ~~l~~~~~--~~dvVIn~agP~~~----~~~~~v~~aci~~Gv~Yv 59 (349)
..+.++++ +.|+|||....... .+ +.+-++|++.|++|+
T Consensus 61 ~~i~~~i~~~~idlVIn~~~~~~~~~~~~~-~~iRr~Av~~~ip~i 105 (116)
T cd01423 61 PSLRELLAEGKIDLVINLPSNRGKRVLDND-YVMRRAADDFAVPLI 105 (116)
T ss_pred hhHHHHHHcCCceEEEECCCCCCCccccCc-EeeehhhHhhCCccc
Confidence 44566665 89999998543322 24 688899999999997
No 363
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=54.85 E-value=1.1e+02 Score=27.49 Aligned_cols=91 Identities=8% Similarity=0.069 Sum_probs=59.0
Q ss_pred CCceEEEeCCC----------HHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHH
Q 018848 8 NSEFAEVNIYN----------EGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDR 77 (349)
Q Consensus 8 ~~~~~~~Dv~d----------~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~ 77 (349)
.++++-+|++| +.-+.++-+..+..++|=- ..... .+.++.++++|++||-+=.|. ...+.+.-+.
T Consensus 29 gad~iH~DVMDghFVPNiTfGp~~v~~l~~~t~~p~DvHL-MV~~p-~~~i~~fa~agad~It~H~E~--~~~~~r~i~~ 104 (220)
T COG0036 29 GADLIHIDVMDGHFVPNITFGPPVVKALRKITDLPLDVHL-MVENP-DRYIEAFAKAGADIITFHAEA--TEHIHRTIQL 104 (220)
T ss_pred CCCEEEEeccCCCcCCCcccCHHHHHHHhhcCCCceEEEE-ecCCH-HHHHHHHHHhCCCEEEEEecc--CcCHHHHHHH
Confidence 58999999998 4555555555556655521 11112 488999999999999987762 1222333445
Q ss_pred HHHcCCcEEecCCcCcchhHHHHHHHH
Q 018848 78 AIAANIPAITTGGIYPGVSNVMAAELV 104 (349)
Q Consensus 78 a~~~g~~~v~~~G~~PGls~lla~~~~ 104 (349)
.|+.| +-.|.-+.|+-+=-...+..
T Consensus 105 Ik~~G--~kaGv~lnP~Tp~~~i~~~l 129 (220)
T COG0036 105 IKELG--VKAGLVLNPATPLEALEPVL 129 (220)
T ss_pred HHHcC--CeEEEEECCCCCHHHHHHHH
Confidence 66666 45666788987655555555
No 364
>PRK08617 acetolactate synthase; Reviewed
Probab=54.83 E-value=61 Score=33.17 Aligned_cols=79 Identities=18% Similarity=0.119 Sum_probs=57.5
Q ss_pred HHHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchhH
Q 018848 20 GSLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVSN 97 (349)
Q Consensus 20 ~~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls~ 97 (349)
+.+.+.++ +++.|.-..|... .++.+++.+.|+.||....|....--. +..+|..|...+..+-.-||++|
T Consensus 9 ~~l~~~L~~~GV~~vFg~pG~~~----~~l~~al~~~~i~~i~~~hE~~A~~~A---~gyar~tg~~gv~~vt~GpG~~N 81 (552)
T PRK08617 9 DLVVDSLINQGVKYVFGIPGAKI----DRVFDALEDSGPELIVTRHEQNAAFMA---AAIGRLTGKPGVVLVTSGPGVSN 81 (552)
T ss_pred HHHHHHHHHcCCCEEEeCCCccH----HHHHHHHhhCCCCEEEeccHHHHHHHH---HhHhhhcCCCEEEEECCCCcHhH
Confidence 45666665 8899998777433 589999988899999998877532222 34466677777777778899999
Q ss_pred HHHHHHHH
Q 018848 98 VMAAELVR 105 (349)
Q Consensus 98 lla~~~~~ 105 (349)
++..-+-.
T Consensus 82 ~l~gl~~A 89 (552)
T PRK08617 82 LATGLVTA 89 (552)
T ss_pred hHHHHHHH
Confidence 99875443
No 365
>PRK09072 short chain dehydrogenase; Provisional
Probab=54.62 E-value=15 Score=33.13 Aligned_cols=34 Identities=12% Similarity=0.228 Sum_probs=27.8
Q ss_pred CCCCceEEEeCCCHHHHHHHhc------CCcEEEEccCCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR------DVDLVVHAAGPF 39 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~------~~dvVIn~agP~ 39 (349)
+.++.++++|+.|++++.++++ +.|+|||++|..
T Consensus 52 ~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~lv~~ag~~ 91 (263)
T PRK09072 52 PGRHRWVVADLTSEAGREAVLARAREMGGINVLINNAGVN 91 (263)
T ss_pred CCceEEEEccCCCHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 3467899999999998877754 579999999853
No 366
>PRK09242 tropinone reductase; Provisional
Probab=54.52 E-value=9.2 Score=34.45 Aligned_cols=32 Identities=13% Similarity=0.222 Sum_probs=26.1
Q ss_pred CCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
.++..+++|+.|++++.+++. +.|+||||+|.
T Consensus 60 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag~ 98 (257)
T PRK09242 60 REVHGLAADVSDDEDRRAILDWVEDHWDGLHILVNNAGG 98 (257)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 357788999999988777665 57999999984
No 367
>PRK08303 short chain dehydrogenase; Provisional
Probab=54.39 E-value=13 Score=34.96 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=26.5
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEcc-C
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAA-G 37 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~a-g 37 (349)
+.++.++++|+.|+++++++++ +.|++||++ |
T Consensus 66 ~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVnnA~g 105 (305)
T PRK08303 66 GGRGIAVQVDHLVPEQVRALVERIDREQGRLDILVNDIWG 105 (305)
T ss_pred CCceEEEEcCCCCHHHHHHHHHHHHHHcCCccEEEECCcc
Confidence 3456789999999999988775 579999999 6
No 368
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=54.36 E-value=67 Score=30.02 Aligned_cols=63 Identities=11% Similarity=0.020 Sum_probs=39.6
Q ss_pred CCcEEEEccCCCCCCCcHHHHHHH---HHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcch
Q 018848 28 DVDLVVHAAGPFQQAPKCTVLEAA---IETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGV 95 (349)
Q Consensus 28 ~~dvVIn~agP~~~~~~~~v~~ac---i~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGl 95 (349)
++|+||.|+.+.... ..+++.+ ++.|.-+||.+...+ ....++.+.+++.|+.++ .+....|.
T Consensus 59 ~~dvvi~~v~~~~~~--~~v~~~l~~~l~~g~ivid~st~~~--~~~~~~~~~~~~~g~~~~-dapvsG~~ 124 (301)
T PRK09599 59 APRVVWLMVPAGEIT--DATIDELAPLLSPGDIVIDGGNSYY--KDDIRRAELLAEKGIHFV-DVGTSGGV 124 (301)
T ss_pred CCCEEEEEecCCcHH--HHHHHHHHhhCCCCCEEEeCCCCCh--hHHHHHHHHHHHcCCEEE-eCCCCcCH
Confidence 479999999653222 2454433 345777999875433 222345667788898765 67777774
No 369
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=54.30 E-value=13 Score=33.77 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=24.3
Q ss_pred ceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 10 EFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 10 ~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
..+++|+.|++++.++++ +.|++||++|-
T Consensus 61 ~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVnnag~ 96 (260)
T PRK06603 61 FVSELDVTNPKSISNLFDDIKEKWGSFDFLLHGMAF 96 (260)
T ss_pred eEEEccCCCHHHHHHHHHHHHHHcCCccEEEEcccc
Confidence 357899999999888775 58999999973
No 370
>PRK07985 oxidoreductase; Provisional
Probab=54.04 E-value=9.5 Score=35.50 Aligned_cols=33 Identities=15% Similarity=0.258 Sum_probs=26.7
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
+.++.++++|+.|.+++.++++ +.|++||++|.
T Consensus 99 ~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~lv~~Ag~ 138 (294)
T PRK07985 99 GRKAVLLPGDLSDEKFARSLVHEAHKALGGLDIMALVAGK 138 (294)
T ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 4456789999999998877665 57999999984
No 371
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=53.99 E-value=17 Score=37.75 Aligned_cols=57 Identities=12% Similarity=0.104 Sum_probs=43.7
Q ss_pred ccccCCCCceEEEeCCCHHHHHHHhcCCcEEEEccCCCC-CCCcHHHHHHHHHcCCCeE
Q 018848 2 VSTLGKNSEFAEVNIYNEGSLLMALRDVDLVVHAAGPFQ-QAPKCTVLEAAIETKTAYI 59 (349)
Q Consensus 2 ~~~l~~~~~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~~-~~~~~~v~~aci~~Gv~Yv 59 (349)
|++.++.+.+..+|..+.+.+.+.+++.|+||..+.-+. .-. ..+-++|++.|.+.+
T Consensus 178 A~~~n~~v~v~~i~~~~~~dl~ev~~~~DiVi~vsDdy~~~~L-r~lN~acvkegk~~I 235 (637)
T TIGR03693 178 AEETDDALLVQEIDFAEDQHLHEAFEPADWVLYVSDNGDIDDL-HALHAFCKEEGKGFI 235 (637)
T ss_pred HHHhCCCCceEeccCCcchhHHHhhcCCcEEEEECCCCChHHH-HHHHHHHHHcCCCeE
Confidence 344567788888888889999999999999999886333 223 378899999994443
No 372
>PLN02778 3,5-epimerase/4-reductase
Probab=53.63 E-value=24 Score=33.03 Aligned_cols=28 Identities=25% Similarity=0.196 Sum_probs=23.0
Q ss_pred EEEeCCCHHHHHHHhc--CCcEEEEccCCC
Q 018848 12 AEVNIYNEGSLLMALR--DVDLVVHAAGPF 39 (349)
Q Consensus 12 ~~~Dv~d~~~l~~~~~--~~dvVIn~agP~ 39 (349)
...|+.|.+.+...++ ++|+|||||++.
T Consensus 39 ~~~~~~~~~~v~~~l~~~~~D~ViH~Aa~~ 68 (298)
T PLN02778 39 GSGRLENRASLEADIDAVKPTHVFNAAGVT 68 (298)
T ss_pred ecCccCCHHHHHHHHHhcCCCEEEECCccc
Confidence 4567888888888887 789999999864
No 373
>PF01876 RNase_P_p30: RNase P subunit p30; InterPro: IPR002738 Members of this protein family are part of the ribonuclease P complex () that takes part in endonucleolytic cleavage of RNA, removing 5'-extra-nucleotide from tRNA precursor. This process is essential for tRNA processing.; GO: 0004540 ribonuclease activity, 0008033 tRNA processing; PDB: 1V77_A 2CZV_A.
Probab=53.61 E-value=91 Score=25.89 Aligned_cols=19 Identities=16% Similarity=0.060 Sum_probs=7.0
Q ss_pred CceEEEeCCCHHHHHHHhc
Q 018848 9 SEFAEVNIYNEGSLLMALR 27 (349)
Q Consensus 9 ~~~~~~Dv~d~~~l~~~~~ 27 (349)
.+.+.+--.+.+.++.+|.
T Consensus 25 ~divav~p~~~~~~~~a~~ 43 (150)
T PF01876_consen 25 YDIVAVRPGSEKAFRAACS 43 (150)
T ss_dssp -SEEEEE-S-HHHHHHHHH
T ss_pred ceEEEEEcCCHHHHHHHHh
Confidence 3444444444444444444
No 374
>PTZ00325 malate dehydrogenase; Provisional
Probab=53.56 E-value=32 Score=32.87 Aligned_cols=71 Identities=17% Similarity=0.050 Sum_probs=41.8
Q ss_pred eEEEeCCCHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCC
Q 018848 11 FAEVNIYNEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGG 90 (349)
Q Consensus 11 ~~~~Dv~d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G 90 (349)
....+.+|+++..+.++++|+||.|+|+....+. .-.|+-. .-.+-+..+-+..+++|...++-+.
T Consensus 59 ~~v~~~td~~~~~~~l~gaDvVVitaG~~~~~~~------------tR~dll~--~N~~i~~~i~~~i~~~~~~~iviv~ 124 (321)
T PTZ00325 59 AKVTGYADGELWEKALRGADLVLICAGVPRKPGM------------TRDDLFN--TNAPIVRDLVAAVASSAPKAIVGIV 124 (321)
T ss_pred ceEEEecCCCchHHHhCCCCEEEECCCCCCCCCC------------CHHHHHH--HHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4556677766667899999999999996443210 0001000 0012234555666777777777776
Q ss_pred cCcch
Q 018848 91 IYPGV 95 (349)
Q Consensus 91 ~~PGl 95 (349)
.+|--
T Consensus 125 SNPvd 129 (321)
T PTZ00325 125 SNPVN 129 (321)
T ss_pred cCcHH
Confidence 77753
No 375
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=53.41 E-value=26 Score=32.97 Aligned_cols=33 Identities=15% Similarity=0.208 Sum_probs=26.5
Q ss_pred CCCceEEEeCCC------HHHHHHHhcCCcEEEEccCCC
Q 018848 7 KNSEFAEVNIYN------EGSLLMALRDVDLVVHAAGPF 39 (349)
Q Consensus 7 ~~~~~~~~Dv~d------~~~l~~~~~~~dvVIn~agP~ 39 (349)
++++++..|+.+ .+.+.++.+++|+||||++..
T Consensus 61 ~~v~~~~~D~~~~~~gl~~~~~~~~~~~~d~vih~a~~~ 99 (367)
T TIGR01746 61 ERIEVVAGDLSEPRLGLSDAEWERLAENVDTIVHNGALV 99 (367)
T ss_pred CCEEEEeCCcCcccCCcCHHHHHHHHhhCCEEEeCCcEe
Confidence 468888999875 456778888999999999853
No 376
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=53.26 E-value=12 Score=36.62 Aligned_cols=34 Identities=18% Similarity=0.222 Sum_probs=27.3
Q ss_pred ccCCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccC
Q 018848 4 TLGKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAG 37 (349)
Q Consensus 4 ~l~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~ag 37 (349)
+.|.++..+.+|+.|++++.++++ +.|++||+++
T Consensus 100 ~~G~~a~~i~~DVss~E~v~~lie~I~e~~G~IDiLVnSaA 140 (398)
T PRK13656 100 AAGLYAKSINGDAFSDEIKQKVIELIKQDLGQVDLVVYSLA 140 (398)
T ss_pred hcCCceEEEEcCCCCHHHHHHHHHHHHHhcCCCCEEEECCc
Confidence 345556788999999988877665 6899999997
No 377
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=53.24 E-value=6.3 Score=30.19 Aligned_cols=37 Identities=22% Similarity=0.448 Sum_probs=27.3
Q ss_pred HHHHhc--CCcEEEEccCCCCC----CCcHHHHHHHHHcCCCeE
Q 018848 22 LLMALR--DVDLVVHAAGPFQQ----APKCTVLEAAIETKTAYI 59 (349)
Q Consensus 22 l~~~~~--~~dvVIn~agP~~~----~~~~~v~~aci~~Gv~Yv 59 (349)
+.++++ +.|+|||...|+.. .+ +.+-++|++.+++++
T Consensus 52 i~~~i~~~~IdlVIn~~~~~~~~~~~dg-~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 52 IMDLIKNGKIDLVINTPYPFSDQEHTDG-YKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHHHHTTSEEEEEEE--THHHHHTHHH-HHHHHHHHHTTSHEE
T ss_pred HHHHHHcCCeEEEEEeCCCCcccccCCc-HHHHHHHHHcCCCCc
Confidence 666666 88999999877653 23 678899999999875
No 378
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=53.13 E-value=94 Score=29.95 Aligned_cols=91 Identities=14% Similarity=0.067 Sum_probs=58.7
Q ss_pred HHHHHhc--CCcEEEEcc-CCCCCCCcHHHHHHHHHcCCCeEecCCChhH---HHHHHHHHHHHHHcCCcEEecCCcCcc
Q 018848 21 SLLMALR--DVDLVVHAA-GPFQQAPKCTVLEAAIETKTAYIDVCDDTIY---SQRAKSFKDRAIAANIPAITTGGIYPG 94 (349)
Q Consensus 21 ~l~~~~~--~~dvVIn~a-gP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~---~~~~~~l~~~a~~~g~~~v~~~G~~PG 94 (349)
+..++++ .+|+|.-.. .|.+ +.++.-|++.|.|.+- |.|. ..+.+++-+.|+++|+.++-|+=+-==
T Consensus 63 syEeLakd~~vDvVyi~~~~~qH----~evv~l~l~~~K~VL~---EKPla~n~~e~~~iveaA~~rgv~~meg~~~R~~ 135 (351)
T KOG2741|consen 63 SYEELAKDPEVDVVYISTPNPQH----YEVVMLALNKGKHVLC---EKPLAMNVAEAEEIVEAAEARGVFFMEGLWWRFF 135 (351)
T ss_pred CHHHHhcCCCcCEEEeCCCCccH----HHHHHHHHHcCCcEEe---cccccCCHHHHHHHHHHHHHcCcEEEeeeeeecC
Confidence 4556666 458877665 3433 6999999999999432 2222 466678888999999876666543322
Q ss_pred hhHHHHHHHHHHHhcccCCCCcEEEEE
Q 018848 95 VSNVMAAELVRVARNESKGEPERLRFS 121 (349)
Q Consensus 95 ls~lla~~~~~~l~~~~~~~v~~i~i~ 121 (349)
..-.-++.+. +++.+..+.++.+.
T Consensus 136 P~~~~lke~l---~~~~~Gdvk~v~~~ 159 (351)
T KOG2741|consen 136 PRYAKLKELL---SSGVLGDVKSVEVE 159 (351)
T ss_pred cHHHHHHHHH---hccccccceEEEEe
Confidence 2223333333 33678888888774
No 379
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=53.11 E-value=29 Score=30.81 Aligned_cols=83 Identities=23% Similarity=0.296 Sum_probs=54.0
Q ss_pred CCCceEEEeCCCHHHHH---HHhcCC-cEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcC
Q 018848 7 KNSEFAEVNIYNEGSLL---MALRDV-DLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAAN 82 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~---~~~~~~-dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g 82 (349)
..++.+.+..++++.+. ++.+.+ ++.| .+| .-.. ..-++.|+++|++|+ ++-. +.. ++-+.+++.|
T Consensus 32 ~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~v-GAG--TVl~-~~~a~~a~~aGA~Fi-vsP~--~~~---~v~~~~~~~~ 101 (204)
T TIGR01182 32 GGLRVLEVTLRTPVALDAIRLLRKEVPDALI-GAG--TVLN-PEQLRQAVDAGAQFI-VSPG--LTP---ELAKHAQDHG 101 (204)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHHHCCCCEE-EEE--eCCC-HHHHHHHHHcCCCEE-ECCC--CCH---HHHHHHHHcC
Confidence 45788889888877643 444433 5555 456 3333 588999999999999 4322 222 3455688899
Q ss_pred CcEEecCCcCcchhHHHHHH
Q 018848 83 IPAITTGGIYPGVSNVMAAE 102 (349)
Q Consensus 83 ~~~v~~~G~~PGls~lla~~ 102 (349)
+..+||+ +.| |+++.++
T Consensus 102 i~~iPG~-~Tp--tEi~~A~ 118 (204)
T TIGR01182 102 IPIIPGV-ATP--SEIMLAL 118 (204)
T ss_pred CcEECCC-CCH--HHHHHHH
Confidence 9988866 333 4555544
No 380
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=52.97 E-value=27 Score=24.48 Aligned_cols=44 Identities=23% Similarity=0.096 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecC
Q 018848 45 CTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTG 89 (349)
Q Consensus 45 ~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~ 89 (349)
..+++.|.+.|.+.+=+++-..+. ...++.+.+++.|+.+++|+
T Consensus 18 ~~~~~~a~~~g~~~v~iTDh~~~~-~~~~~~~~~~~~gi~~i~G~ 61 (67)
T smart00481 18 EELVKRAKELGLKAIAITDHGNLF-GAVEFYKAAKKAGIKPIIGL 61 (67)
T ss_pred HHHHHHHHHcCCCEEEEeeCCccc-CHHHHHHHHHHcCCeEEEEE
Confidence 489999999999999888754321 12244455667888888775
No 381
>PRK06914 short chain dehydrogenase; Provisional
Probab=52.87 E-value=11 Score=34.46 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=25.8
Q ss_pred CCCceEEEeCCCHHHHHHHh-------cCCcEEEEccCCC
Q 018848 7 KNSEFAEVNIYNEGSLLMAL-------RDVDLVVHAAGPF 39 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~-------~~~dvVIn~agP~ 39 (349)
.+++++++|+.|++++.+ + .+.|+||||+|..
T Consensus 54 ~~~~~~~~D~~d~~~~~~-~~~~~~~~~~id~vv~~ag~~ 92 (280)
T PRK06914 54 QNIKVQQLDVTDQNSIHN-FQLVLKEIGRIDLLVNNAGYA 92 (280)
T ss_pred CceeEEecCCCCHHHHHH-HHHHHHhcCCeeEEEECCccc
Confidence 468889999999998765 3 3579999999843
No 382
>PRK07069 short chain dehydrogenase; Validated
Probab=52.74 E-value=18 Score=32.20 Aligned_cols=30 Identities=20% Similarity=0.160 Sum_probs=24.6
Q ss_pred ceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 10 EFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 10 ~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
..++.|+.|++++.++++ ++|+||||+|..
T Consensus 54 ~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 90 (251)
T PRK07069 54 FAAVQDVTDEAQWQALLAQAADAMGGLSVLVNNAGVG 90 (251)
T ss_pred EEEEeecCCHHHHHHHHHHHHHHcCCccEEEECCCcC
Confidence 357889999999877765 579999999854
No 383
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=52.70 E-value=20 Score=34.09 Aligned_cols=37 Identities=16% Similarity=0.081 Sum_probs=28.3
Q ss_pred HHHHhcCCcEEEEccCCCCCCCcHH--HHHHHHHcCCCeEe
Q 018848 22 LLMALRDVDLVVHAAGPFQQAPKCT--VLEAAIETKTAYID 60 (349)
Q Consensus 22 l~~~~~~~dvVIn~agP~~~~~~~~--v~~aci~~Gv~YvD 60 (349)
+.++++++|+||+|+.=|.. . +- +=++|.+.|+++|=
T Consensus 145 ~~~li~~~DlVid~tDn~~~-r-~L~~iN~ac~~~~~PlV~ 183 (318)
T TIGR03603 145 LKDLLKDYNYIIICTEHSNI-S-LLRGLNKLSKETKKPNTI 183 (318)
T ss_pred HHHHhCCCCEEEECCCCccH-h-HHHHHHHHHHHHCCCEEE
Confidence 56889999999999963331 1 12 55999999999994
No 384
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=52.09 E-value=73 Score=31.55 Aligned_cols=77 Identities=22% Similarity=0.105 Sum_probs=56.2
Q ss_pred HHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHH-cCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchhH
Q 018848 21 SLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIE-TKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVSN 97 (349)
Q Consensus 21 ~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~-~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls~ 97 (349)
.|.+.++ +++.|.-+-|... .++.+++.+ .|++||....|....--. +..||..|.+.+..+-..||.+|
T Consensus 5 ~l~~~L~~~GV~~vFg~pG~~~----~~l~dal~~~~~i~~v~~~hE~~A~~mA---dgyar~tg~~gv~~~t~GpG~~N 77 (432)
T TIGR00173 5 VLVEELVRLGVRHVVISPGSRS----TPLALAAAEHPRLRVHVHIDERSAGFFA---LGLAKASGRPVAVVCTSGTAVAN 77 (432)
T ss_pred HHHHHHHHcCCCEEEECCCccc----HHHHHHHHhCCCcEEEEecCCccHHHHH---HHHHhccCCCEEEEECCcchHhh
Confidence 4555554 8999998877433 588888855 589999999887543222 44577778777877888999999
Q ss_pred HHHHHHH
Q 018848 98 VMAAELV 104 (349)
Q Consensus 98 lla~~~~ 104 (349)
++..-+-
T Consensus 78 ~l~gl~~ 84 (432)
T TIGR00173 78 LLPAVIE 84 (432)
T ss_pred hhHHHHH
Confidence 9977544
No 385
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=51.94 E-value=41 Score=34.13 Aligned_cols=74 Identities=9% Similarity=0.117 Sum_probs=43.3
Q ss_pred CHHHHHHHhcCCcEEEEccCCCCCCCcHHHH---HHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcc
Q 018848 18 NEGSLLMALRDVDLVVHAAGPFQQAPKCTVL---EAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPG 94 (349)
Q Consensus 18 d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~---~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PG 94 (349)
+++++.+-++++|+||-|+.. ...-+ .|+ ...++.|.-+||.+...+ +...++.++.+++|+. .++++...|
T Consensus 62 s~~e~v~~l~~~dvIi~~v~~-~~aV~-~Vi~gl~~~l~~G~iiID~sT~~~--~~t~~~~~~l~~~Gi~-fldapVSGG 136 (493)
T PLN02350 62 DPEDFVLSIQKPRSVIILVKA-GAPVD-QTIKALSEYMEPGDCIIDGGNEWY--ENTERRIKEAAEKGLL-YLGMGVSGG 136 (493)
T ss_pred CHHHHHhcCCCCCEEEEECCC-cHHHH-HHHHHHHhhcCCCCEEEECCCCCH--HHHHHHHHHHHHcCCe-EEeCCCcCC
Confidence 444444444459999999842 22111 332 233466888999876532 2233446667777875 777777766
Q ss_pred hh
Q 018848 95 VS 96 (349)
Q Consensus 95 ls 96 (349)
..
T Consensus 137 ~~ 138 (493)
T PLN02350 137 EE 138 (493)
T ss_pred HH
Confidence 53
No 386
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=51.83 E-value=11 Score=35.40 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=20.1
Q ss_pred EEEeCCCHHHHHHHhc--CCcEEEEccC
Q 018848 12 AEVNIYNEGSLLMALR--DVDLVVHAAG 37 (349)
Q Consensus 12 ~~~Dv~d~~~l~~~~~--~~dvVIn~ag 37 (349)
+..|+.|.+.+.++++ ++|+|+|+|-
T Consensus 59 vigDvrd~~~l~~~~~~~~pdiVfHaAA 86 (293)
T PF02719_consen 59 VIGDVRDKERLNRIFEEYKPDIVFHAAA 86 (293)
T ss_dssp -CTSCCHHHHHHHHTT--T-SEEEE---
T ss_pred eeecccCHHHHHHHHhhcCCCEEEEChh
Confidence 4679999999999999 9999999995
No 387
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=51.82 E-value=19 Score=32.27 Aligned_cols=56 Identities=21% Similarity=0.376 Sum_probs=35.9
Q ss_pred EEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcc
Q 018848 32 VVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPG 94 (349)
Q Consensus 32 VIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PG 94 (349)
||+...=|....-..+++||-..|+.|||++.+++.++...+ ..++++..+ +.+|=
T Consensus 17 VIsGLnNFd~~~V~~i~~AA~~ggAt~vDIAadp~LV~~~~~------~s~lPICVS-aVep~ 72 (242)
T PF04481_consen 17 VISGLNNFDAESVAAIVKAAEIGGATFVDIAADPELVKLAKS------LSNLPICVS-AVEPE 72 (242)
T ss_pred heeCccccCHHHHHHHHHHHHccCCceEEecCCHHHHHHHHH------hCCCCeEee-cCCHH
Confidence 555554443211147899999999999999999877665532 245554443 35554
No 388
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=51.77 E-value=13 Score=33.31 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=26.7
Q ss_pred CCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
.++..+.+|+.|++++.+++. +.|+|||++|.
T Consensus 58 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 96 (254)
T PRK08085 58 IKAHAAPFNVTHKQEVEAAIEHIEKDIGPIDVLINNAGI 96 (254)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 356788899999999988775 47999999984
No 389
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=51.53 E-value=33 Score=29.46 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=34.3
Q ss_pred CCCceEEEeCCCHHHHHHHhc-----CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALR-----DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCD 63 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~-----~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~ 63 (349)
..++.+++|=.+++.++++++ +..+.|.++| .-..+ .+.+.+ +.|++|+.++.
T Consensus 99 ~g~d~I~lD~~~~~~~~~~v~~l~~~~~~v~ie~SG--GI~~~-ni~~ya-~~gvD~isvg~ 156 (169)
T PF01729_consen 99 AGADIIMLDNMSPEDLKEAVEELRELNPRVKIEASG--GITLE-NIAEYA-KTGVDVISVGS 156 (169)
T ss_dssp TT-SEEEEES-CHHHHHHHHHHHHHHTTTSEEEEES--SSSTT-THHHHH-HTT-SEEEECH
T ss_pred hCCCEEEecCcCHHHHHHHHHHHhhcCCcEEEEEEC--CCCHH-HHHHHH-hcCCCEEEcCh
Confidence 457888888888888888776 4557777777 22222 554444 88888888864
No 390
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=51.43 E-value=97 Score=26.13 Aligned_cols=76 Identities=18% Similarity=0.206 Sum_probs=47.9
Q ss_pred HHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHc-CCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchhHH
Q 018848 22 LLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIET-KTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVSNV 98 (349)
Q Consensus 22 l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~-Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls~l 98 (349)
+.+.++ +++.|.-..|... .++.++..+. +..+|....|.....-. +..++..+..++ -+-..||++|+
T Consensus 3 l~~~L~~~Gi~~vFg~pG~~~----~~l~~al~~~~~i~~i~~rhE~~A~~mA---~gyar~t~~gv~-~~t~GpG~~n~ 74 (162)
T cd07038 3 LLERLKQLGVKHVFGVPGDYN----LPLLDAIEENPGLRWVGNCNELNAGYAA---DGYARVKGLGAL-VTTYGVGELSA 74 (162)
T ss_pred HHHHHHHcCCCEEEEeCCccH----HHHHHHHhhcCCceEEeeCCHHHHHHHH---HHHHHhhCCEEE-EEcCCccHHHH
Confidence 344444 7888887777433 5888888666 89999998876432222 222333343333 34458999999
Q ss_pred HHHHHHH
Q 018848 99 MAAELVR 105 (349)
Q Consensus 99 la~~~~~ 105 (349)
+..-+-.
T Consensus 75 ~~gl~~A 81 (162)
T cd07038 75 LNGIAGA 81 (162)
T ss_pred HHHHHHH
Confidence 8876543
No 391
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=51.34 E-value=20 Score=31.87 Aligned_cols=34 Identities=18% Similarity=0.306 Sum_probs=26.1
Q ss_pred CCCCceEEEeCCCHHHHHHH-------hcCCcEEEEccCCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMA-------LRDVDLVVHAAGPF 39 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~-------~~~~dvVIn~agP~ 39 (349)
+.++..+++|+.|++++.++ +.+.|+||++++..
T Consensus 49 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~a~~~ 89 (255)
T TIGR01963 49 GGSVIYLVADVTKEDEIADMIAAAAAEFGGLDILVNNAGIQ 89 (255)
T ss_pred CCceEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 34678899999999966544 44679999999843
No 392
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=51.28 E-value=27 Score=31.13 Aligned_cols=72 Identities=14% Similarity=0.108 Sum_probs=44.1
Q ss_pred CCceEEEeCCCHH---HHHHHhcCC-cEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCC
Q 018848 8 NSEFAEVNIYNEG---SLLMALRDV-DLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANI 83 (349)
Q Consensus 8 ~~~~~~~Dv~d~~---~l~~~~~~~-dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~ 83 (349)
.++.+.+-.+.+. +++++.+.. +++| .+| .-.. +.=++.++++|+.++=.=+-.+ ++-+.+...|+
T Consensus 38 Gi~~IEITl~sp~a~e~I~~l~~~~p~~lI-GAG--TVL~-~~q~~~a~~aGa~fiVsP~~~~------ev~~~a~~~~i 107 (211)
T COG0800 38 GIPAIEITLRTPAALEAIRALAKEFPEALI-GAG--TVLN-PEQARQAIAAGAQFIVSPGLNP------EVAKAANRYGI 107 (211)
T ss_pred CCCeEEEecCCCCHHHHHHHHHHhCcccEE-ccc--cccC-HHHHHHHHHcCCCEEECCCCCH------HHHHHHHhCCC
Confidence 4666666666553 444444433 4555 557 3333 5778999999999876544222 23444677888
Q ss_pred cEEecC
Q 018848 84 PAITTG 89 (349)
Q Consensus 84 ~~v~~~ 89 (349)
+.+||+
T Consensus 108 p~~PG~ 113 (211)
T COG0800 108 PYIPGV 113 (211)
T ss_pred cccCCC
Confidence 866665
No 393
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=51.26 E-value=20 Score=35.40 Aligned_cols=50 Identities=20% Similarity=0.327 Sum_probs=36.0
Q ss_pred EeCCCHHHHHHHhcCCcEEEEccC-CCCCCCcHHHHHHHHHcCCC--eEecCCC
Q 018848 14 VNIYNEGSLLMALRDVDLVVHAAG-PFQQAPKCTVLEAAIETKTA--YIDVCDD 64 (349)
Q Consensus 14 ~Dv~d~~~l~~~~~~~dvVIn~ag-P~~~~~~~~v~~aci~~Gv~--YvDi~~~ 64 (349)
.++..-+++...+..+|+||+|++ |-.-.. ...++.+++...+ .||++-.
T Consensus 224 ~~~~~l~el~~~l~~~DvVissTsa~~~ii~-~~~ve~a~~~r~~~livDiavP 276 (414)
T COG0373 224 AEAVALEELLEALAEADVVISSTSAPHPIIT-REMVERALKIRKRLLIVDIAVP 276 (414)
T ss_pred CeeecHHHHHHhhhhCCEEEEecCCCccccC-HHHHHHHHhcccCeEEEEecCC
Confidence 334445678899999999999986 544444 3677777777666 7888753
No 394
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=51.22 E-value=83 Score=27.24 Aligned_cols=74 Identities=16% Similarity=0.165 Sum_probs=48.6
Q ss_pred CCCceEEEeCCCHH---HHHHHhcCC-cEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcC
Q 018848 7 KNSEFAEVNIYNEG---SLLMALRDV-DLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAAN 82 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~---~l~~~~~~~-dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g 82 (349)
..++.++++..++. .++.+.+.+ ++.|. +|+-.+ ..=++.|+++|++++=..+..+ ++.+.+++.+
T Consensus 28 ~G~~~vev~~~~~~~~~~i~~l~~~~~~~~iG-ag~v~~---~~~~~~a~~~Ga~~i~~p~~~~------~~~~~~~~~~ 97 (190)
T cd00452 28 GGIRAIEITLRTPGALEAIRALRKEFPEALIG-AGTVLT---PEQADAAIAAGAQFIVSPGLDP------EVVKAANRAG 97 (190)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHCCCCEEE-EEeCCC---HHHHHHHHHcCCCEEEcCCCCH------HHHHHHHHcC
Confidence 45889999988774 455555555 46554 466554 3556999999999997655432 3445566677
Q ss_pred CcEEecCC
Q 018848 83 IPAITTGG 90 (349)
Q Consensus 83 ~~~v~~~G 90 (349)
..+++++-
T Consensus 98 ~~~i~gv~ 105 (190)
T cd00452 98 IPLLPGVA 105 (190)
T ss_pred CcEECCcC
Confidence 77665443
No 395
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=51.18 E-value=1.4e+02 Score=27.88 Aligned_cols=48 Identities=15% Similarity=0.150 Sum_probs=37.0
Q ss_pred eEEEeCCCHHHHHHHhc-CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecC
Q 018848 11 FAEVNIYNEGSLLMALR-DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVC 62 (349)
Q Consensus 11 ~~~~Dv~d~~~l~~~~~-~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~ 62 (349)
.+.+|-.+++.++++++ |+|+ ||-+.-+.+ ..+++.|.++|+.||=+-
T Consensus 92 ~ISIDT~~~~va~~AL~~Gadi-INDI~g~~d---~~~~~~~a~~~~~vVlmh 140 (282)
T PRK11613 92 WISVDTSKPEVIRESAKAGAHI-INDIRSLSE---PGALEAAAETGLPVCLMH 140 (282)
T ss_pred eEEEECCCHHHHHHHHHcCCCE-EEECCCCCC---HHHHHHHHHcCCCEEEEc
Confidence 58999999999999996 8885 665533432 477888999999998653
No 396
>PRK06057 short chain dehydrogenase; Provisional
Probab=51.04 E-value=19 Score=32.40 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=25.3
Q ss_pred ceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 10 EFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 10 ~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
.++++|+.|++++.++++ +.|+|||++|.
T Consensus 54 ~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 89 (255)
T PRK06057 54 LFVPTDVTDEDAVNALFDTAAETYGSVDIAFNNAGI 89 (255)
T ss_pred cEEEeeCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 578999999999988886 56999999984
No 397
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=50.81 E-value=20 Score=33.44 Aligned_cols=76 Identities=13% Similarity=0.033 Sum_probs=44.5
Q ss_pred HHHHHHhcCCcEEEEccCCCCCCCcHHHHHHH--------HHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCc
Q 018848 20 GSLLMALRDVDLVVHAAGPFQQAPKCTVLEAA--------IETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGI 91 (349)
Q Consensus 20 ~~l~~~~~~~dvVIn~agP~~~~~~~~v~~ac--------i~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~ 91 (349)
+++...+.++|+||||++-..... ...+..+ +..+...+|+...+.- ..+-..|+++|..++.|.
T Consensus 182 ~~~~~~~~~~DiVInaTp~g~~~~-~~~l~~~~~~~~~~~~~~~~~v~D~vY~P~~----T~ll~~A~~~G~~~~~Gl-- 254 (282)
T TIGR01809 182 SGGLAIEKAAEVLVSTVPADVPAD-YVDLFATVPFLLLKRKSSEGIFLDAAYDPWP----TPLVAIVSAAGWRVISGL-- 254 (282)
T ss_pred hhhhhcccCCCEEEECCCCCCCCC-HHHhhhhhhhhccccCCCCcEEEEEeeCCCC----CHHHHHHHHCCCEEECcH--
Confidence 344566678999999985222111 1222221 2346678898764421 234566888998866554
Q ss_pred CcchhHHHHHHHHHHH
Q 018848 92 YPGVSNVMAAELVRVA 107 (349)
Q Consensus 92 ~PGls~lla~~~~~~l 107 (349)
+||...++.++
T Consensus 255 -----~MLv~Qa~~~f 265 (282)
T TIGR01809 255 -----QMLLHQGFAQF 265 (282)
T ss_pred -----HHHHHHHHHHH
Confidence 56777666543
No 398
>PLN02206 UDP-glucuronate decarboxylase
Probab=50.58 E-value=23 Score=35.35 Aligned_cols=52 Identities=19% Similarity=0.217 Sum_probs=33.6
Q ss_pred CCceEEEeCCCHHHHHHHhcCCcEEEEccCCCC---C-CC-----------cHHHHHHHHHcCCCeEecCCC
Q 018848 8 NSEFAEVNIYNEGSLLMALRDVDLVVHAAGPFQ---Q-AP-----------KCTVLEAAIETKTAYIDVCDD 64 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~~---~-~~-----------~~~v~~aci~~Gv~YvDi~~~ 64 (349)
+++.+..|+.++ ++.++|+|||||+... . .. -..++++|.++|+.+|=++..
T Consensus 168 ~~~~i~~D~~~~-----~l~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~SS~ 234 (442)
T PLN02206 168 NFELIRHDVVEP-----ILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 234 (442)
T ss_pred ceEEEECCccCh-----hhcCCCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCh
Confidence 456666676554 3468999999997421 0 00 025678888888888776654
No 399
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=50.51 E-value=77 Score=32.65 Aligned_cols=78 Identities=12% Similarity=0.111 Sum_probs=55.1
Q ss_pred HHHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHc-CCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchh
Q 018848 20 GSLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIET-KTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVS 96 (349)
Q Consensus 20 ~~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~-Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls 96 (349)
+.|.+.++ +++.|.-.-|-+. .++++++.+. ++.||....|....-.. +..+|..|...+.-+...||.+
T Consensus 7 ~~l~~~L~~~GV~~vFg~pG~~~----~~l~dal~~~~~i~~i~~rhE~~A~~~A---dgyar~tg~~gv~~~t~GpG~~ 79 (574)
T PRK09124 7 DYIAKTLEQAGVKRIWGVTGDSL----NGLSDSLRRMGTIEWMHTRHEEVAAFAA---GAEAQLTGELAVCAGSCGPGNL 79 (574)
T ss_pred HHHHHHHHHcCCCEEEECCCCch----HHHHHHHhccCCCcEEEeCcHHHHHHHH---HHHHHhhCCcEEEEECCCCCHH
Confidence 44555555 8899998776432 5899988764 89999998876433222 3446667777777778889999
Q ss_pred HHHHHHHH
Q 018848 97 NVMAAELV 104 (349)
Q Consensus 97 ~lla~~~~ 104 (349)
|++..-+-
T Consensus 80 n~~~gi~~ 87 (574)
T PRK09124 80 HLINGLFD 87 (574)
T ss_pred HHHHHHHH
Confidence 98877544
No 400
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=50.46 E-value=15 Score=34.64 Aligned_cols=32 Identities=13% Similarity=0.129 Sum_probs=26.5
Q ss_pred CCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
.++.++.+|+.|.+++++++. +.|++||++|.
T Consensus 53 ~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~iD~lI~nAG~ 91 (314)
T TIGR01289 53 DSYTIMHLDLGSLDSVRQFVQQFRESGRPLDALVCNAAV 91 (314)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEECCCc
Confidence 356788999999999887764 58999999984
No 401
>PRK06091 membrane protein FdrA; Validated
Probab=50.41 E-value=44 Score=34.32 Aligned_cols=61 Identities=16% Similarity=0.215 Sum_probs=43.8
Q ss_pred hcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEE-ecCC
Q 018848 26 LRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAI-TTGG 90 (349)
Q Consensus 26 ~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v-~~~G 90 (349)
+.+.|++|.++++.+- +..++.|++.|.+-+=+++..+ .+...++.+.|+++|+.++ |+||
T Consensus 115 lpe~DLAvIsVPa~~v---~~al~ea~~~G~~viI~S~gfg-~~~E~~L~e~Ar~~GlrvmGPNCG 176 (555)
T PRK06091 115 LPDANLALISVAGEYA---AELAEQALDRNLNVMMFSDNVT-LEDEIRLKTRAREKGLLVMGPDCG 176 (555)
T ss_pred CCCCCEEEEecCHHHH---HHHHHHHHHcCCeEEEEcCCCC-HHHHHHHHHHHHHcCCEEECCCCh
Confidence 3367999999964443 6899999999988776666543 2333478889999997655 4554
No 402
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=50.12 E-value=91 Score=32.18 Aligned_cols=79 Identities=19% Similarity=0.156 Sum_probs=57.2
Q ss_pred HHHHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchh
Q 018848 19 EGSLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVS 96 (349)
Q Consensus 19 ~~~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls 96 (349)
.+.|.+.++ +++.|.-.-|.+. .++++++.+.+++||....|....--. +.-|+..|-..+..+-..||++
T Consensus 18 a~~l~~~L~~~GV~~vFGipG~~~----~~l~dal~~~~i~~i~~rhE~~A~~mA---dgyar~tg~~gv~~~t~GpG~~ 90 (570)
T PRK06725 18 AGHVIQCLKKLGVTTVFGYPGGAI----LPVYDALYESGLKHILTRHEQAAIHAA---EGYARASGKVGVVFATSGPGAT 90 (570)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcch----HHHHHHHHhcCCcEEEecCHHHHHHHH---HHHHHHhCCCeEEEECCCccHH
Confidence 466777776 8899997777444 589999988899999998876543222 4446667755666667789999
Q ss_pred HHHHHHHH
Q 018848 97 NVMAAELV 104 (349)
Q Consensus 97 ~lla~~~~ 104 (349)
|++..-+-
T Consensus 91 N~~~gla~ 98 (570)
T PRK06725 91 NLVTGLAD 98 (570)
T ss_pred HHHHHHHH
Confidence 99876544
No 403
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=50.08 E-value=48 Score=28.15 Aligned_cols=79 Identities=22% Similarity=0.192 Sum_probs=51.1
Q ss_pred HHHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHc-CCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchh
Q 018848 20 GSLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIET-KTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVS 96 (349)
Q Consensus 20 ~~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~-Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls 96 (349)
+.|.+.++ +++.|.-.-|... .++.+++.+. |++||-...|.....-. +..++..|...+...-..||++
T Consensus 5 ~~l~~~L~~~Gv~~vfgvpG~~~----~~l~~al~~~~~i~~i~~~~E~~A~~~A---~g~ar~~g~~~v~~~~~GpG~~ 77 (172)
T PF02776_consen 5 EALAEALKANGVTHVFGVPGSGN----LPLLDALEKSPGIRFIPVRHEQGAAFMA---DGYARATGRPGVVIVTSGPGAT 77 (172)
T ss_dssp HHHHHHHHHTT-SEEEEE--GGG----HHHHHHHHHTTTSEEEE-SSHHHHHHHH---HHHHHHHSSEEEEEEETTHHHH
T ss_pred HHHHHHHHHCCCeEEEEEeChhH----hHHHHHhhhhcceeeecccCcchhHHHH---HHHHHhhccceEEEeecccchH
Confidence 34555555 8899987766433 5899999999 79999998876543222 3334555655666665678999
Q ss_pred HHHHHHHHH
Q 018848 97 NVMAAELVR 105 (349)
Q Consensus 97 ~lla~~~~~ 105 (349)
|++..-+-.
T Consensus 78 n~~~~l~~A 86 (172)
T PF02776_consen 78 NALTGLANA 86 (172)
T ss_dssp TTHHHHHHH
T ss_pred HHHHHHhhc
Confidence 998876543
No 404
>PRK07060 short chain dehydrogenase; Provisional
Probab=49.98 E-value=19 Score=31.87 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=26.0
Q ss_pred CceEEEeCCCHHHHHHHhc---CCcEEEEccCC
Q 018848 9 SEFAEVNIYNEGSLLMALR---DVDLVVHAAGP 38 (349)
Q Consensus 9 ~~~~~~Dv~d~~~l~~~~~---~~dvVIn~agP 38 (349)
..++++|+.|.+++.++++ ++|+|||++|.
T Consensus 55 ~~~~~~D~~~~~~v~~~~~~~~~~d~vi~~ag~ 87 (245)
T PRK07060 55 CEPLRLDVGDDAAIRAALAAAGAFDGLVNCAGI 87 (245)
T ss_pred CeEEEecCCCHHHHHHHHHHhCCCCEEEECCCC
Confidence 5688999999999988886 48999999984
No 405
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=49.90 E-value=21 Score=35.56 Aligned_cols=51 Identities=18% Similarity=0.208 Sum_probs=31.9
Q ss_pred CCceEEEeCCCHHHHHHHhcCCcEEEEccCCCC---CC-C-----------cHHHHHHHHHcCCCeEecCC
Q 018848 8 NSEFAEVNIYNEGSLLMALRDVDLVVHAAGPFQ---QA-P-----------KCTVLEAAIETKTAYIDVCD 63 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~~---~~-~-----------~~~v~~aci~~Gv~YvDi~~ 63 (349)
+++.+..|+.+. .+.++|+||+||++.. .. . -..++++|.++|+.+|=++.
T Consensus 169 ~~~~~~~Di~~~-----~~~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~SS 234 (436)
T PLN02166 169 RFELIRHDVVEP-----ILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTST 234 (436)
T ss_pred ceEEEECccccc-----cccCCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECc
Confidence 345555565443 4568999999997422 10 0 02567788777777776654
No 406
>PRK07832 short chain dehydrogenase; Provisional
Probab=49.89 E-value=20 Score=32.67 Aligned_cols=31 Identities=19% Similarity=0.254 Sum_probs=25.0
Q ss_pred CceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 9 SEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 9 ~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
..+.++|+.|++++.+++. +.|+||||+|..
T Consensus 52 ~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag~~ 89 (272)
T PRK07832 52 PEHRALDISDYDAVAAFAADIHAAHGSMDVVMNIAGIS 89 (272)
T ss_pred ceEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 4567899999998877665 479999999853
No 407
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=49.89 E-value=28 Score=29.04 Aligned_cols=42 Identities=10% Similarity=0.087 Sum_probs=29.6
Q ss_pred HHHHHHhc--CCcEEEEccCCCCC----CCcHHHHHHHHHcCCCeEec
Q 018848 20 GSLLMALR--DVDLVVHAAGPFQQ----APKCTVLEAAIETKTAYIDV 61 (349)
Q Consensus 20 ~~l~~~~~--~~dvVIn~agP~~~----~~~~~v~~aci~~Gv~YvDi 61 (349)
..+.++++ .+|+|||+..|... .....+-++|++++++|+-.
T Consensus 65 ~~i~~~I~~g~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~ 112 (142)
T PRK05234 65 QQIGALIAEGKIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATN 112 (142)
T ss_pred hhHHHHHHcCceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcC
Confidence 34566665 88999998733321 11148899999999999875
No 408
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=49.84 E-value=81 Score=28.02 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=10.1
Q ss_pred HHHHcCCcEEecCCcCc
Q 018848 77 RAIAANIPAITTGGIYP 93 (349)
Q Consensus 77 ~a~~~g~~~v~~~G~~P 93 (349)
++.++|..++.+=+++|
T Consensus 75 ~a~~aGA~FivsP~~~~ 91 (204)
T TIGR01182 75 QAVDAGAQFIVSPGLTP 91 (204)
T ss_pred HHHHcCCCEEECCCCCH
Confidence 35567777775544444
No 409
>PRK06483 dihydromonapterin reductase; Provisional
Probab=49.64 E-value=15 Score=32.54 Aligned_cols=30 Identities=7% Similarity=0.292 Sum_probs=25.1
Q ss_pred CceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 9 SEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 9 ~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
+.++.+|+.|++++.++++ +.|++||++|-
T Consensus 48 ~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag~ 84 (236)
T PRK06483 48 AQCIQADFSTNAGIMAFIDELKQHTDGLRAIIHNASD 84 (236)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHhhCCCccEEEECCcc
Confidence 5788999999998877665 47999999983
No 410
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=49.63 E-value=13 Score=33.34 Aligned_cols=32 Identities=31% Similarity=0.205 Sum_probs=26.8
Q ss_pred CCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
.++.++.+|+.|.+++.+++. +.|+|||++|.
T Consensus 53 ~~~~~~~~D~~~~~~i~~~~~~~~~~~~~id~vv~~ag~ 91 (259)
T PRK12384 53 GMAYGFGADATSEQSVLALSRGVDEIFGRVDLLVYNAGI 91 (259)
T ss_pred ceeEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 357899999999998887765 57999999984
No 411
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=49.61 E-value=15 Score=32.40 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=25.5
Q ss_pred CCCceEEEeCCCH-HHHHHHhcCCcEEEEccCC
Q 018848 7 KNSEFAEVNIYNE-GSLLMALRDVDLVVHAAGP 38 (349)
Q Consensus 7 ~~~~~~~~Dv~d~-~~l~~~~~~~dvVIn~agP 38 (349)
.++..+++|+.|+ +++.+...++|+|||++|.
T Consensus 45 ~~~~~~~~D~~~~~~~~~~~~~~id~lv~~ag~ 77 (235)
T PRK06550 45 GNFHFLQLDLSDDLEPLFDWVPSVDILCNTAGI 77 (235)
T ss_pred CcEEEEECChHHHHHHHHHhhCCCCEEEECCCC
Confidence 3567889999997 6666666789999999984
No 412
>PRK12742 oxidoreductase; Provisional
Probab=49.54 E-value=18 Score=31.92 Aligned_cols=30 Identities=17% Similarity=0.324 Sum_probs=25.4
Q ss_pred CceEEEeCCCHHHHHHHhc---CCcEEEEccCC
Q 018848 9 SEFAEVNIYNEGSLLMALR---DVDLVVHAAGP 38 (349)
Q Consensus 9 ~~~~~~Dv~d~~~l~~~~~---~~dvVIn~agP 38 (349)
.+++.+|+.|.+++.++++ +.|++||++|.
T Consensus 53 ~~~~~~D~~~~~~~~~~~~~~~~id~li~~ag~ 85 (237)
T PRK12742 53 ATAVQTDSADRDAVIDVVRKSGALDILVVNAGI 85 (237)
T ss_pred CeEEecCCCCHHHHHHHHHHhCCCcEEEECCCC
Confidence 5678899999998888776 47999999984
No 413
>PRK08322 acetolactate synthase; Reviewed
Probab=49.53 E-value=90 Score=31.86 Aligned_cols=79 Identities=14% Similarity=0.138 Sum_probs=56.9
Q ss_pred HHHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchhH
Q 018848 20 GSLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVSN 97 (349)
Q Consensus 20 ~~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls~ 97 (349)
+.+.+.++ +++.|.-.-|... .++.+++.+.++.||..-.|....--. +..|+..|...+.-+-..||++|
T Consensus 5 ~~l~~~L~~~Gv~~vFg~pG~~~----~~l~dal~~~~i~~i~~~hE~~A~~~A---~gyar~tg~~gv~~~t~GpG~~N 77 (547)
T PRK08322 5 DLFVKCLENEGVEYIFGIPGEEN----LDLLEALRDSSIKLILTRHEQGAAFMA---ATYGRLTGKAGVCLSTLGPGATN 77 (547)
T ss_pred HHHHHHHHHcCCCEEEeCCCcch----HHHHHHHHhcCCcEEEeccHHHHHHHH---HHHHHhhCCCEEEEECCCccHhH
Confidence 44556665 8999998766333 589999888899999998876543222 34466777677777778899999
Q ss_pred HHHHHHHH
Q 018848 98 VMAAELVR 105 (349)
Q Consensus 98 lla~~~~~ 105 (349)
++..-+-.
T Consensus 78 ~~~~i~~A 85 (547)
T PRK08322 78 LVTGVAYA 85 (547)
T ss_pred HHHHHHHH
Confidence 99775443
No 414
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=49.42 E-value=13 Score=32.99 Aligned_cols=33 Identities=21% Similarity=0.186 Sum_probs=27.4
Q ss_pred CCCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP 38 (349)
+.++.++++|+.|.+++.++++ +.|.+|+++|-
T Consensus 47 ~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~~li~~ag~ 86 (239)
T TIGR01831 47 GGNARLLQFDVADRVACRTLLEADIAEHGAYYGVVLNAGI 86 (239)
T ss_pred CCeEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 4568899999999999888765 46999999984
No 415
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=49.39 E-value=35 Score=32.22 Aligned_cols=63 Identities=10% Similarity=0.017 Sum_probs=38.6
Q ss_pred HHHHHhcC--CcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCC-hhHHHHHHHHHHHHHHcCCcEE
Q 018848 21 SLLMALRD--VDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDD-TIYSQRAKSFKDRAIAANIPAI 86 (349)
Q Consensus 21 ~l~~~~~~--~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~-~~~~~~~~~l~~~a~~~g~~~v 86 (349)
++.++-.. .|++|.++++..- +.+++.|.+.|++.+=+-.+ .+-......+.+.+++.|+.++
T Consensus 60 sv~dlp~~~~~DlAvI~vPa~~v---~~al~e~~~~Gvk~~vIisaGf~e~g~~~~~~~~ar~~girvi 125 (300)
T PLN00125 60 TVAEAKAETKANASVIYVPPPFA---AAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLI 125 (300)
T ss_pred CHHHHhhccCCCEEEEecCHHHH---HHHHHHHHHcCCCEEEEECCCCCcccHHHHHHHHHhhcCCEEE
Confidence 45555544 7999999965444 68999999999997654221 1111112234445777877543
No 416
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=49.17 E-value=1e+02 Score=32.12 Aligned_cols=89 Identities=17% Similarity=0.131 Sum_probs=62.9
Q ss_pred CceEEEeCCC---HHHHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHc-CCCeEecCCChhHHHHHHHHHHHHHHcC
Q 018848 9 SEFAEVNIYN---EGSLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIET-KTAYIDVCDDTIYSQRAKSFKDRAIAAN 82 (349)
Q Consensus 9 ~~~~~~Dv~d---~~~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~-Gv~YvDi~~~~~~~~~~~~l~~~a~~~g 82 (349)
.+.+.++-.+ .+.|.+.|+ +++.|.-.-|-.. .++.+++.+. ++.||....|....--. +.-++..|
T Consensus 21 ~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFgipG~~~----~~l~dal~~~~~i~~v~~rhE~~A~~~A---dgyar~tg 93 (612)
T PRK07789 21 ARPRIVAPERMTGAQAVVRSLEELGVDVVFGIPGGAI----LPVYDPLFDSTKVRHVLVRHEQGAGHAA---EGYAQATG 93 (612)
T ss_pred ccccccccccccHHHHHHHHHHHCCCCEEEEcCCcch----HHHHHHHhccCCceEEEeccHHHHHHHH---HHHHHHhC
Confidence 3445555554 577778777 8899998777322 5888988664 89999998776433222 44567778
Q ss_pred CcEEecCCcCcchhHHHHHHHH
Q 018848 83 IPAITTGGIYPGVSNVMAAELV 104 (349)
Q Consensus 83 ~~~v~~~G~~PGls~lla~~~~ 104 (349)
...+..+-..||++|++..-+-
T Consensus 94 ~~gv~~~t~GPG~~N~l~gl~~ 115 (612)
T PRK07789 94 RVGVCMATSGPGATNLVTPIAD 115 (612)
T ss_pred CCEEEEECCCccHHHHHHHHHH
Confidence 7777778889999999876544
No 417
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=49.13 E-value=43 Score=36.28 Aligned_cols=94 Identities=7% Similarity=0.040 Sum_probs=59.9
Q ss_pred HHHHHHHhc----CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhH--HHHHHHHHHHHHHcCCcEEecCCcC
Q 018848 19 EGSLLMALR----DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIY--SQRAKSFKDRAIAANIPAITTGGIY 92 (349)
Q Consensus 19 ~~~l~~~~~----~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~--~~~~~~l~~~a~~~g~~~v~~~G~~ 92 (349)
.+.+.+++. ..++||+|.+ .... ......|++.|+|.|-.+-..-. .....++.+.|+++|+.+...+-..
T Consensus 534 ~~~~~~~~~~~~~~~~vvvd~t~-~~~~--~~~~~~al~~g~~VVtaNK~~~a~~~~~~~el~~~a~~~~~~~~yeatV~ 610 (819)
T PRK09436 534 LDRLIRLVKEYHLLNPVIVDCTS-SQAV--ADQYADFLAAGFHVVTPNKKANTSSYAYYHQLREAARKSRRKFLYETNVG 610 (819)
T ss_pred HHHHHHHHhhcCCCCCEEEECCC-ChHH--HHHHHHHHHcCCEEEcCCchhccCCHHHHHHHHHHHHHcCCeEEEeeeec
Confidence 345555665 3589999995 3333 35567999999999987743211 1344577888999999999877666
Q ss_pred cchhHHHH-HHHHHHHhcccCCCCcEEEE
Q 018848 93 PGVSNVMA-AELVRVARNESKGEPERLRF 120 (349)
Q Consensus 93 PGls~lla-~~~~~~l~~~~~~~v~~i~i 120 (349)
.|+.=+=. .... ...+++.+|+-
T Consensus 611 ~giPii~~l~~~~-----~~g~~i~~i~G 634 (819)
T PRK09436 611 AGLPVIETLQNLL-----NAGDELLKFEG 634 (819)
T ss_pred cccchHHHHHHHH-----hccCcEEEEEE
Confidence 66532211 2222 12467888864
No 418
>PRK08324 short chain dehydrogenase; Validated
Probab=49.08 E-value=13 Score=39.24 Aligned_cols=32 Identities=25% Similarity=0.314 Sum_probs=27.6
Q ss_pred CCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 8 NSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
++.++++|+.|++++.++++ +.|+||||+|..
T Consensus 471 ~v~~v~~Dvtd~~~v~~~~~~~~~~~g~iDvvI~~AG~~ 509 (681)
T PRK08324 471 RALGVACDVTDEAAVQAAFEEAALAFGGVDIVVSNAGIA 509 (681)
T ss_pred cEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 67789999999999888775 689999999853
No 419
>PRK06101 short chain dehydrogenase; Provisional
Probab=49.01 E-value=22 Score=31.69 Aligned_cols=32 Identities=19% Similarity=0.163 Sum_probs=26.7
Q ss_pred CCCceEEEeCCCHHHHHHHhcC----CcEEEEccCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALRD----VDLVVHAAGP 38 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~~----~dvVIn~agP 38 (349)
.++.++++|+.|.+++.+++++ .|++||++|.
T Consensus 46 ~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~~ag~ 81 (240)
T PRK06101 46 ANIFTLAFDVTDHPGTKAALSQLPFIPELWIFNAGD 81 (240)
T ss_pred CCCeEEEeeCCCHHHHHHHHHhcccCCCEEEEcCcc
Confidence 4578899999999999999885 4788888873
No 420
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=48.93 E-value=22 Score=34.22 Aligned_cols=87 Identities=14% Similarity=0.066 Sum_probs=51.8
Q ss_pred hcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhH-------HHHHHHHHHHHHHc-CCcEEecCCcCcchhH
Q 018848 26 LRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIY-------SQRAKSFKDRAIAA-NIPAITTGGIYPGVSN 97 (349)
Q Consensus 26 ~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~-------~~~~~~l~~~a~~~-g~~~v~~~G~~PGls~ 97 (349)
++++|+|+-|+|.... ..++...+++|+..||.+++..+ +..+. ++..+++ ...+|.+.|..+--.-
T Consensus 59 ~~~~D~v~~a~g~~~s---~~~a~~~~~~G~~VID~ss~~R~~~~~p~~vpevN--~~~i~~~~~~~iianp~C~~t~~~ 133 (339)
T TIGR01296 59 FEGIDIALFSAGGSVS---KEFAPKAAKCGAIVIDNTSAFRMDPDVPLVVPEVN--LEDLKEFNTKGIIANPNCSTIQMV 133 (339)
T ss_pred hcCCCEEEECCCHHHH---HHHHHHHHHCCCEEEECCHHHhCCCCCCEEeCCcC--HHHHhhCccCCEEECCCcHHHHHH
Confidence 3799999999975543 58889899999999999974421 11110 1111121 1226766666655444
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEEEe
Q 018848 98 VMAAELVRVARNESKGEPERLRFSYY 123 (349)
Q Consensus 98 lla~~~~~~l~~~~~~~v~~i~i~~~ 123 (349)
+..+-+.+ ...++++.+.-+
T Consensus 134 l~l~pL~~------~~~i~~i~vtt~ 153 (339)
T TIGR01296 134 VVLKPLHD------EAKIKRVVVSTY 153 (339)
T ss_pred HHHHHHHH------hcCccEEEEEee
Confidence 44444443 234677776544
No 421
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=48.84 E-value=85 Score=32.29 Aligned_cols=79 Identities=15% Similarity=0.093 Sum_probs=57.0
Q ss_pred HHHHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHH-cCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcch
Q 018848 19 EGSLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIE-TKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGV 95 (349)
Q Consensus 19 ~~~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~-~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGl 95 (349)
.+.|.+.++ +++.|.-..|.+. .++.+++.+ .++.||....|....--. +..++..|...+..+-.-||+
T Consensus 7 a~~l~~~L~~~GV~~vFg~pG~~~----~~l~~al~~~~~i~~v~~~hE~~A~~mA---dgyar~tg~~gv~~~t~GpG~ 79 (574)
T PRK06882 7 AEMVVQSLRDEGVEYVFGYPGGSV----LDIYDAIHTLGGIEHVLVRHEQAAVHMA---DGYARSTGKVGCVLVTSGPGA 79 (574)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcch----HHHHHHHhhcCCCeEEEeccHHHHHHHH---HHHHHhhCCCeEEEECCCccH
Confidence 355666666 8899998877444 589999877 489999998876433222 444667776666666778999
Q ss_pred hHHHHHHHH
Q 018848 96 SNVMAAELV 104 (349)
Q Consensus 96 s~lla~~~~ 104 (349)
+|++..-+-
T Consensus 80 ~N~l~~i~~ 88 (574)
T PRK06882 80 TNAITGIAT 88 (574)
T ss_pred HHHHHHHHH
Confidence 999876544
No 422
>KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only]
Probab=48.44 E-value=22 Score=32.24 Aligned_cols=33 Identities=12% Similarity=0.276 Sum_probs=29.0
Q ss_pred CCCCceEEEeCCCHHHHHHHhc---------CCcEEEEccCC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR---------DVDLVVHAAGP 38 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~---------~~dvVIn~agP 38 (349)
.+|+..+++|+++.+++..+.+ +.++.||++|=
T Consensus 53 d~rvHii~Ldvt~deS~~~~~~~V~~iVg~~GlnlLinNaGi 94 (249)
T KOG1611|consen 53 DSRVHIIQLDVTCDESIDNFVQEVEKIVGSDGLNLLINNAGI 94 (249)
T ss_pred CCceEEEEEecccHHHHHHHHHHHHhhcccCCceEEEeccce
Confidence 5689999999999999988865 78999999983
No 423
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.38 E-value=60 Score=27.31 Aligned_cols=50 Identities=14% Similarity=0.084 Sum_probs=39.1
Q ss_pred CCceEEEeCCCH---HHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCCh
Q 018848 8 NSEFAEVNIYNE---GSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDT 65 (349)
Q Consensus 8 ~~~~~~~Dv~d~---~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~ 65 (349)
.++.+++|.... ..+.+.++.-|+|| |.. .+++..+++.|+.-++..|..
T Consensus 43 ~i~~v~V~~g~DaaD~~Iv~~a~~gDlVV-T~D-------i~LA~~ll~kg~~v~~prGr~ 95 (150)
T COG1671 43 EIRTVVVDAGFDAADDWIVNLAEKGDLVV-TAD-------IPLASLLLDKGAAVLNPRGRL 95 (150)
T ss_pred ceeEEEecCCcchHHHHHHHhCCCCCEEE-ECc-------hHHHHHHHhcCCEEECCCCcc
Confidence 467777776632 34778888999999 433 699999999999999999864
No 424
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=48.09 E-value=79 Score=31.67 Aligned_cols=65 Identities=15% Similarity=0.074 Sum_probs=42.5
Q ss_pred HHHHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEe
Q 018848 19 EGSLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAIT 87 (349)
Q Consensus 19 ~~~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~ 87 (349)
++.+.++++ ++|+|||+..=+.. ..-..+||++|.+ |=++.-...+..=..+.+.+++.|+.++|
T Consensus 138 ~egl~~la~~~evDiVV~AIvG~aG---L~pTl~AIkaGK~-VALANKESLV~aG~lI~~~ak~~~~~IlP 204 (454)
T PLN02696 138 EEGIVEVARHPEAVTVVTGIVGCAG---LKPTVAAIEAGKD-IALANKETLIAGGPFVLPLAKKHGVKILP 204 (454)
T ss_pred HHHHHHHHcCCCCCEEEEeCccccc---hHHHHHHHHCCCc-EEEecHHHHHhhHHHHHHHHHHcCCeEee
Confidence 456777777 57999999863333 4555899999988 55554433333333455667788877554
No 425
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=47.55 E-value=97 Score=31.83 Aligned_cols=79 Identities=16% Similarity=0.130 Sum_probs=57.4
Q ss_pred HHHHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHc-CCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcch
Q 018848 19 EGSLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIET-KTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGV 95 (349)
Q Consensus 19 ~~~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~-Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGl 95 (349)
.+.|.+.++ +++.|.-.-|.+. .++.++..+. ++.||....|....-.. +..||..|...+.-+-.-||+
T Consensus 16 ~~~l~~~L~~~GV~~vFgvpG~~~----~~l~dal~~~~~i~~i~~~hE~~A~~~A---dgyar~tg~~gv~~~t~GpG~ 88 (564)
T PRK08155 16 AELIVRLLERQGIRIVTGIPGGAI----LPLYDALSQSTQIRHILARHEQGAGFIA---QGMARTTGKPAVCMACSGPGA 88 (564)
T ss_pred HHHHHHHHHHcCCCEEEeCCCccc----HHHHHHHhccCCceEEEeccHHHHHHHH---HHHHHHcCCCeEEEECCCCcH
Confidence 456777776 8999998766433 5888887665 89999998876433222 445777887777777788999
Q ss_pred hHHHHHHHH
Q 018848 96 SNVMAAELV 104 (349)
Q Consensus 96 s~lla~~~~ 104 (349)
+|++..-+-
T Consensus 89 ~N~l~gl~~ 97 (564)
T PRK08155 89 TNLVTAIAD 97 (564)
T ss_pred HHHHHHHHH
Confidence 999876544
No 426
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=47.27 E-value=81 Score=31.80 Aligned_cols=76 Identities=13% Similarity=0.129 Sum_probs=48.6
Q ss_pred CCCHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHH---HHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcC
Q 018848 16 IYNEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEA---AIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIY 92 (349)
Q Consensus 16 v~d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~a---ci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~ 92 (349)
..+.+++.+.++++|+||-|+.|..... .+++. +++.|.-.||.+...+ ....++.++.+++|+ -.+++|.+
T Consensus 51 ~~s~~e~v~~l~~~dvIil~v~~~~~v~--~Vi~~l~~~L~~g~iIID~gns~~--~~t~~~~~~l~~~gi-~fvdapVs 125 (467)
T TIGR00873 51 AYSIEEFVQSLERPRKIMLMVKAGAPVD--AVINQLLPLLEKGDIIIDGGNSHY--PDTERRYKELKAKGI-LFVGSGVS 125 (467)
T ss_pred cCCHHHHHhhcCCCCEEEEECCCcHHHH--HHHHHHHhhCCCCCEEEECCCcCH--HHHHHHHHHHHhcCC-EEEcCCCC
Confidence 4456666666678999999997644332 45443 3456888999886431 122233445667777 48888888
Q ss_pred cchh
Q 018848 93 PGVS 96 (349)
Q Consensus 93 PGls 96 (349)
.|..
T Consensus 126 GG~~ 129 (467)
T TIGR00873 126 GGEE 129 (467)
T ss_pred CCHH
Confidence 8874
No 427
>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=47.21 E-value=69 Score=30.45 Aligned_cols=32 Identities=16% Similarity=0.121 Sum_probs=27.6
Q ss_pred CCCCceEEEeCCCHHHHHHHhc---------CCcEEEEccC
Q 018848 6 GKNSEFAEVNIYNEGSLLMALR---------DVDLVVHAAG 37 (349)
Q Consensus 6 ~~~~~~~~~Dv~d~~~l~~~~~---------~~dvVIn~ag 37 (349)
.++...+++|++++++++++.+ +-=-|||+||
T Consensus 75 s~rl~t~~LDVT~~esi~~a~~~V~~~l~~~gLwglVNNAG 115 (322)
T KOG1610|consen 75 SPRLRTLQLDVTKPESVKEAAQWVKKHLGEDGLWGLVNNAG 115 (322)
T ss_pred CCcceeEeeccCCHHHHHHHHHHHHHhcccccceeEEeccc
Confidence 4678899999999999999876 5567999998
No 428
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=47.19 E-value=1.1e+02 Score=31.29 Aligned_cols=78 Identities=18% Similarity=0.126 Sum_probs=55.3
Q ss_pred HHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchhHH
Q 018848 21 SLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVSNV 98 (349)
Q Consensus 21 ~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls~l 98 (349)
.|.+.++ +++.|.-.-|.+. .++++++.+.++.||....|....--. +..+|..|...+.-+-..||++|+
T Consensus 4 ~l~~~L~~~Gv~~vFg~pG~~~----~~l~dal~~~~i~~i~~~hE~~A~~~A---dgyar~tg~~gv~~~t~GpG~~n~ 76 (539)
T TIGR02418 4 LVVDQLENQGVRYVFGIPGAKI----DRVFDALEDKGIELIVVRHEQNAAFMA---QAVGRITGKPGVALVTSGPGCSNL 76 (539)
T ss_pred HHHHHHHHcCCCEEEECCCCch----HHHHHHHhhCCCCEEEeCcHHHHHHHH---HHHHHHhCCceEEEECCCCCHhHH
Confidence 3445554 8899998777543 589999888899999998876433222 344666776666667779999999
Q ss_pred HHHHHHH
Q 018848 99 MAAELVR 105 (349)
Q Consensus 99 la~~~~~ 105 (349)
+..-+-.
T Consensus 77 l~gl~~A 83 (539)
T TIGR02418 77 VTGLATA 83 (539)
T ss_pred HHHHHHH
Confidence 9875443
No 429
>PRK06924 short chain dehydrogenase; Provisional
Probab=47.02 E-value=13 Score=33.17 Aligned_cols=33 Identities=15% Similarity=0.307 Sum_probs=25.4
Q ss_pred cCCCCceEEEeCCCHHHHHHHhcCC-----------cEEEEccC
Q 018848 5 LGKNSEFAEVNIYNEGSLLMALRDV-----------DLVVHAAG 37 (349)
Q Consensus 5 l~~~~~~~~~Dv~d~~~l~~~~~~~-----------dvVIn~ag 37 (349)
.+.++.++++|+.|++++.++++.+ +++|+++|
T Consensus 46 ~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ag 89 (251)
T PRK06924 46 YNSNLTFHSLDLQDVHELETNFNEILSSIQEDNVSSIHLINNAG 89 (251)
T ss_pred cCCceEEEEecCCCHHHHHHHHHHHHHhcCcccCCceEEEEcce
Confidence 3456789999999999998887633 16788876
No 430
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=47.02 E-value=21 Score=33.68 Aligned_cols=59 Identities=24% Similarity=0.247 Sum_probs=43.5
Q ss_pred CCCceEEEeCCCHHHHHHHhc--CCcEEEEccCCCC------------CC---CcHHHHHHHHHcCC--CeEecCCCh
Q 018848 7 KNSEFAEVNIYNEGSLLMALR--DVDLVVHAAGPFQ------------QA---PKCTVLEAAIETKT--AYIDVCDDT 65 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~--~~dvVIn~agP~~------------~~---~~~~v~~aci~~Gv--~YvDi~~~~ 65 (349)
++..+++.|+.|.+.+.++++ +.|+|||-|--++ .+ +-..+++|+.+... .|+-+|-|.
T Consensus 51 ~~~~fv~~DI~D~~~v~~~~~~~~~D~VvhfAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDE 128 (340)
T COG1088 51 PRYRFVQGDICDRELVDRLFKEYQPDAVVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDE 128 (340)
T ss_pred CCceEEeccccCHHHHHHHHHhcCCCeEEEechhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEecccc
Confidence 578999999999999999999 6899999764222 11 11357777777774 677777544
No 431
>PRK12747 short chain dehydrogenase; Provisional
Probab=46.99 E-value=23 Score=31.74 Aligned_cols=32 Identities=13% Similarity=0.116 Sum_probs=24.4
Q ss_pred CCCceEEEeCCCHHHHHHHhc-------------CCcEEEEccCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALR-------------DVDLVVHAAGP 38 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~-------------~~dvVIn~agP 38 (349)
.++...++|+.|.+++.++++ +.|++||++|.
T Consensus 54 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~g~~~id~lv~~Ag~ 98 (252)
T PRK12747 54 GSAFSIGANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGI 98 (252)
T ss_pred CceEEEecccCCHHHHHHHHHHHHHHhhhhcCCCCCCEEEECCCc
Confidence 446678899999887665442 68999999983
No 432
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=46.95 E-value=80 Score=30.36 Aligned_cols=97 Identities=14% Similarity=0.105 Sum_probs=54.4
Q ss_pred cCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHH-------HHHHH-HHHHHHHcCCcEEecCCcCcchhHH
Q 018848 27 RDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYS-------QRAKS-FKDRAIAANIPAITTGGIYPGVSNV 98 (349)
Q Consensus 27 ~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~-------~~~~~-l~~~a~~~g~~~v~~~G~~PGls~l 98 (349)
+++|+|+-|++.. .. ..++..+.++|+..||.+++..+. -++.. .-+..++++ +|-+-|..|--.-+
T Consensus 65 ~~~Dvvf~a~p~~--~s-~~~~~~~~~~g~~VIDlS~~fRl~~~vP~~lPEvn~~~l~~i~~~~--iIAnPgC~~t~~~l 139 (336)
T PRK08040 65 SQAQLAFFVAGRE--AS-AAYAEEATNAGCLVIDSSGLFALEPDVPLVVPEVNPFVLADYRNRN--IIAVADSLTSQLLT 139 (336)
T ss_pred cCCCEEEECCCHH--HH-HHHHHHHHHCCCEEEECChHhcCCCCCceEccccCHHHHhhhccCC--EEECCCHHHHHHHH
Confidence 6899999999633 34 588899999999999999865221 11110 011223333 55555555544333
Q ss_pred HHHHHHHHHhcccCCCCcEEEEEEeecCCCCCchhhH
Q 018848 99 MAAELVRVARNESKGEPERLRFSYYTAGTGGAGPTIL 135 (349)
Q Consensus 99 la~~~~~~l~~~~~~~v~~i~i~~~~~g~~~~~~~~~ 135 (349)
..+=+.+ ...+++|.+.-+. +.++.|....
T Consensus 140 aL~PL~~------~~~i~~viV~t~q-gvSGAG~~~~ 169 (336)
T PRK08040 140 AIKPLID------QAGLSRLHVTNLL-SASAHGKAAV 169 (336)
T ss_pred HHHHHHH------hCCCeEEEEEeec-cccccChhhH
Confidence 3333443 2346677665443 4444554333
No 433
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=46.86 E-value=40 Score=31.94 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=27.2
Q ss_pred CceEEEeCCCHHHHHHHhc--CCcEEEEccC
Q 018848 9 SEFAEVNIYNEGSLLMALR--DVDLVVHAAG 37 (349)
Q Consensus 9 ~~~~~~Dv~d~~~l~~~~~--~~dvVIn~ag 37 (349)
.++.+.|+.|.+.|++.++ +.|.||+.|+
T Consensus 46 ~~f~~gDi~D~~~L~~vf~~~~idaViHFAa 76 (329)
T COG1087 46 FKFYEGDLLDRALLTAVFEENKIDAVVHFAA 76 (329)
T ss_pred CceEEeccccHHHHHHHHHhcCCCEEEECcc
Confidence 5899999999999999998 8899999997
No 434
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=46.70 E-value=1.1e+02 Score=31.53 Aligned_cols=79 Identities=15% Similarity=0.180 Sum_probs=58.7
Q ss_pred HHHHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchh
Q 018848 19 EGSLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVS 96 (349)
Q Consensus 19 ~~~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls 96 (349)
.+.|.+.++ +++.|.-.-|-+. .++.++..+.++.||....|....-.. +..++..|.+.+..+-..||++
T Consensus 11 ~~~l~~~L~~~Gv~~vFgipG~~~----~~l~~al~~~~i~~v~~~hE~~A~~~A---dgyar~tg~~~v~~~t~GpG~~ 83 (561)
T PRK06048 11 ARAIIKCLEKEGVEVIFGYPGGAI----IPVYDELYDSDLRHILVRHEQAAAHAA---DGYARATGKVGVCVATSGPGAT 83 (561)
T ss_pred HHHHHHHHHHcCCCEEEECCCcch----HHHHHHHhhCCCeEEEeccHHHHHHHH---HHHHHHhCCCeEEEECCCCcHH
Confidence 466777776 8999997766333 589998888899999998776433222 4557778877777788899999
Q ss_pred HHHHHHHH
Q 018848 97 NVMAAELV 104 (349)
Q Consensus 97 ~lla~~~~ 104 (349)
|.+..-+-
T Consensus 84 n~~~gl~~ 91 (561)
T PRK06048 84 NLVTGIAT 91 (561)
T ss_pred HHHHHHHH
Confidence 99876544
No 435
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=45.93 E-value=38 Score=32.27 Aligned_cols=39 Identities=18% Similarity=0.183 Sum_probs=30.5
Q ss_pred HHHHHHhcC--CcEEEEccCCCCCCCcHHHHHHHHHcCCCeEec
Q 018848 20 GSLLMALRD--VDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDV 61 (349)
Q Consensus 20 ~~l~~~~~~--~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi 61 (349)
.++.++.+. +|++|-+++|.+- +..++.|+++|+..+=+
T Consensus 78 ~sv~ea~~~~~~D~avI~VPa~~v---~dai~Ea~~aGI~~~Vi 118 (317)
T PTZ00187 78 ATVKEAKKATGADASVIYVPPPHA---ASAIIEAIEAEIPLVVC 118 (317)
T ss_pred CCHHHHhcccCCCEEEEecCHHHH---HHHHHHHHHcCCCEEEE
Confidence 466677765 8999999976554 58888999999998654
No 436
>PLN02470 acetolactate synthase
Probab=45.92 E-value=96 Score=32.07 Aligned_cols=80 Identities=18% Similarity=0.094 Sum_probs=57.2
Q ss_pred HHHHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHc-CCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcch
Q 018848 19 EGSLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIET-KTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGV 95 (349)
Q Consensus 19 ~~~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~-Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGl 95 (349)
.+.|.+.++ +++.|.-..|-+. .++++++.+. |+.||....|....-.. +..++..|...+..+-.-||+
T Consensus 16 a~~l~~~L~~~GV~~vFg~pG~~~----~~l~dal~~~~~i~~i~~rhE~~A~~~A---dgyar~tg~~gv~~~t~GPG~ 88 (585)
T PLN02470 16 ADILVEALEREGVDTVFAYPGGAS----MEIHQALTRSNCIRNVLCRHEQGEVFAA---EGYAKASGKVGVCIATSGPGA 88 (585)
T ss_pred HHHHHHHHHHcCCCEEEEcCCccc----HHHHHHHhccCCceEEEeccHHHHHHHH---HHHHHHhCCCEEEEECCCccH
Confidence 356667776 8899997766433 5888888665 89999998876433222 444667776677777788999
Q ss_pred hHHHHHHHHH
Q 018848 96 SNVMAAELVR 105 (349)
Q Consensus 96 s~lla~~~~~ 105 (349)
+|++..-+-.
T Consensus 89 ~N~l~gia~A 98 (585)
T PLN02470 89 TNLVTGLADA 98 (585)
T ss_pred HHHHHHHHHH
Confidence 9998775443
No 437
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=45.91 E-value=28 Score=34.73 Aligned_cols=38 Identities=11% Similarity=0.003 Sum_probs=31.2
Q ss_pred HHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecC
Q 018848 23 LMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVC 62 (349)
Q Consensus 23 ~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~ 62 (349)
.++++++|+||||...... . ..+-+.|...++++|+.+
T Consensus 93 ~~f~~~~DvVi~alDn~~a-R-~~vn~~C~~~~iPli~~g 130 (435)
T cd01490 93 DEFWEKLDGVANALDNVDA-R-MYVDRRCVYYRKPLLESG 130 (435)
T ss_pred HHHhcCCCEEEECCCCHHH-H-HHHHHHHHHhCCCEEEEe
Confidence 4678899999999864432 2 579999999999999975
No 438
>PRK08266 hypothetical protein; Provisional
Probab=45.52 E-value=1.1e+02 Score=31.22 Aligned_cols=79 Identities=22% Similarity=0.168 Sum_probs=56.6
Q ss_pred HHHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHc--CCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcch
Q 018848 20 GSLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIET--KTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGV 95 (349)
Q Consensus 20 ~~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~--Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGl 95 (349)
+.+.+.++ |++.|.-.-|-.. .+++++..+. ++.||....|....--. +..++..|...+..+-..||+
T Consensus 8 ~~l~~~L~~~Gv~~vFg~pG~~~----~~l~~al~~~~~~i~~v~~~hE~~A~~~A---~gyar~tg~~~v~~~t~GpG~ 80 (542)
T PRK08266 8 EAIVAGLVAHGVDTVFGLPGAQL----YWLFDALYKAGDRIRVIHTRHEQAAGYMA---FGYARSTGRPGVCSVVPGPGV 80 (542)
T ss_pred HHHHHHHHHcCCCEEEECCCcch----HHHHHHHHhcCCCCeEEeeccHHHHHHHH---HHHHHHhCCCeEEEECCCCcH
Confidence 45566665 8899998777422 5899998775 89999998876433222 445677777777777788999
Q ss_pred hHHHHHHHHH
Q 018848 96 SNVMAAELVR 105 (349)
Q Consensus 96 s~lla~~~~~ 105 (349)
+|++..-+-.
T Consensus 81 ~N~~~gi~~A 90 (542)
T PRK08266 81 LNAGAALLTA 90 (542)
T ss_pred HHHHHHHHHH
Confidence 9999775543
No 439
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=45.46 E-value=73 Score=26.65 Aligned_cols=63 Identities=19% Similarity=0.188 Sum_probs=38.8
Q ss_pred HHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChh-HHHHHHHHHHHHHHcCCcEEe
Q 018848 21 SLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTI-YSQRAKSFKDRAIAANIPAIT 87 (349)
Q Consensus 21 ~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~-~~~~~~~l~~~a~~~g~~~v~ 87 (349)
-++++++ +++++. .|= +.+.+ .++++|++..+|-|=+|.-.. +......+.+..+++|+--++
T Consensus 31 via~~l~d~GfeVi~--~g~-~~tp~-e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~ 96 (143)
T COG2185 31 VIARALADAGFEVIN--LGL-FQTPE-EAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDIL 96 (143)
T ss_pred HHHHHHHhCCceEEe--cCC-cCCHH-HHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceE
Confidence 3556666 555443 232 44443 888888888888888886442 333344566667777765555
No 440
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=45.35 E-value=52 Score=32.86 Aligned_cols=63 Identities=17% Similarity=0.027 Sum_probs=43.5
Q ss_pred HHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEec-CC---Chh--HHHHHHHHHHHHHHcCCcEE
Q 018848 21 SLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDV-CD---DTI--YSQRAKSFKDRAIAANIPAI 86 (349)
Q Consensus 21 ~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi-~~---~~~--~~~~~~~l~~~a~~~g~~~v 86 (349)
++.++=...|++|-|++|-.. ..+++.|++.|++.+=+ +. +.. -.+...++.+.++++|+.++
T Consensus 57 sl~~lp~~~Dlavi~vp~~~~---~~~l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvl 125 (447)
T TIGR02717 57 SVLEIPDPVDLAVIVVPAKYV---PQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLL 125 (447)
T ss_pred CHHHCCCCCCEEEEecCHHHH---HHHHHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEE
Confidence 455555688999999976554 69999999999998754 21 110 01122467788999998766
No 441
>PRK12828 short chain dehydrogenase; Provisional
Probab=45.31 E-value=28 Score=30.51 Aligned_cols=32 Identities=19% Similarity=0.347 Sum_probs=26.7
Q ss_pred CCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 8 NSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
+.+.+..|+.|.+++.++++ ++|+||+++|..
T Consensus 55 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 93 (239)
T PRK12828 55 ALRIGGIDLVDPQAARRAVDEVNRQFGRLDALVNIAGAF 93 (239)
T ss_pred CceEEEeecCCHHHHHHHHHHHHHHhCCcCEEEECCccc
Confidence 46788899999999888776 689999999843
No 442
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=45.19 E-value=11 Score=33.75 Aligned_cols=32 Identities=22% Similarity=0.354 Sum_probs=25.9
Q ss_pred CceEEEeCCCHHHHHHHh--------cCCcEEEEccCCCC
Q 018848 9 SEFAEVNIYNEGSLLMAL--------RDVDLVVHAAGPFQ 40 (349)
Q Consensus 9 ~~~~~~Dv~d~~~l~~~~--------~~~dvVIn~agP~~ 40 (349)
.+.+++|+.|++++.+++ .+.|++||++|...
T Consensus 46 ~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~~a~~~~ 85 (241)
T PF13561_consen 46 AEVIQCDLSDEESVEALFDEAVERFGGRIDILVNNAGISP 85 (241)
T ss_dssp SEEEESCTTSHHHHHHHHHHHHHHHCSSESEEEEEEESCT
T ss_pred CceEeecCcchHHHHHHHHHHHhhcCCCeEEEEecccccc
Confidence 346999999999998884 46799999998543
No 443
>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]
Probab=45.09 E-value=9.5 Score=35.36 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=49.2
Q ss_pred ccccCCCCceEEEeCCCHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHc
Q 018848 2 VSTLGKNSEFAEVNIYNEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAA 81 (349)
Q Consensus 2 ~~~l~~~~~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~ 81 (349)
++++...++.+|.|+..-+++..+++..|++..|. |... +-+.-.=++-|+ |||+-|. |...|.+.|+++-+.
T Consensus 181 a~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~at-lste---Pilfgewlkpgt-hIdlVGs--f~p~mhEcDdelIq~ 253 (333)
T KOG3007|consen 181 AKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGAT-LSTE---PILFGEWLKPGT-HIDLVGS--FKPVMHECDDELIQS 253 (333)
T ss_pred HHHhhhcccceEEEEEehhhhhcccccCceEEecc-ccCC---ceeeeeeecCCc-eEeeecc--CCchHHHHhHHHhhh
Confidence 34445556889999998899999999999999776 4433 355555566674 4665553 334455556665544
Q ss_pred CC
Q 018848 82 NI 83 (349)
Q Consensus 82 g~ 83 (349)
++
T Consensus 254 a~ 255 (333)
T KOG3007|consen 254 AC 255 (333)
T ss_pred he
Confidence 43
No 444
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=44.92 E-value=16 Score=34.63 Aligned_cols=79 Identities=16% Similarity=0.154 Sum_probs=48.3
Q ss_pred HHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHH-------HHHH-HHHHHHHHcCCcEEecCCcCc
Q 018848 22 LLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYS-------QRAK-SFKDRAIAANIPAITTGGIYP 93 (349)
Q Consensus 22 l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~-------~~~~-~l~~~a~~~g~~~v~~~G~~P 93 (349)
..++++++|+|+-|++ .... ..++..+.+.|+..||.+++..+. -++. +..++.+ +..+|.+-|..|
T Consensus 43 ~~~~~~~~D~vFlalp--~~~s-~~~~~~~~~~g~~VIDlSadfRl~~~~~yglPEln~~~~~~i~--~a~lIAnPgC~a 117 (310)
T TIGR01851 43 RAKLLNAADVAILCLP--DDAA-REAVSLVDNPNTCIIDASTAYRTADDWAYGFPELAPGQREKIR--NSKRIANPGCYP 117 (310)
T ss_pred HhHhhcCCCEEEECCC--HHHH-HHHHHHHHhCCCEEEECChHHhCCCCCeEEccccCHHHHHhhc--cCCEEECCCCHH
Confidence 3466689999999985 3333 478888889999999999865321 1111 1112223 334666666666
Q ss_pred chhHHHHHHHHH
Q 018848 94 GVSNVMAAELVR 105 (349)
Q Consensus 94 Gls~lla~~~~~ 105 (349)
--.-+..+=+.+
T Consensus 118 Ta~~LaL~PL~~ 129 (310)
T TIGR01851 118 TGFIALMRPLVE 129 (310)
T ss_pred HHHHHHHHHHHH
Confidence 554444444443
No 445
>PRK05858 hypothetical protein; Provisional
Probab=44.51 E-value=1.2e+02 Score=30.89 Aligned_cols=79 Identities=23% Similarity=0.230 Sum_probs=56.2
Q ss_pred HHHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchhH
Q 018848 20 GSLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVSN 97 (349)
Q Consensus 20 ~~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls~ 97 (349)
+.|.+.++ +++.|.-.-|-+. .++++++.+.++.||....|....--. +..++..|...+..+..-||++|
T Consensus 9 ~~l~~~L~~~GV~~vFg~pG~~~----~~l~dal~~~~i~~i~~rhE~~A~~~A---dGyar~tg~~gv~~~t~GpG~~n 81 (542)
T PRK05858 9 RLAARRLKAHGVDTMFTLSGGHL----FPLYDGAREEGIRLIDVRHEQTAAFAA---EAWAKLTRVPGVAVLTAGPGVTN 81 (542)
T ss_pred HHHHHHHHHcCCCEEEeCCCcch----HHHHHHHHhcCCCEEeeccHHHHHHHH---HHHHHhcCCCeEEEEcCCchHHH
Confidence 44555555 8899998777433 589999988899999998876433222 44566677666666677899999
Q ss_pred HHHHHHHH
Q 018848 98 VMAAELVR 105 (349)
Q Consensus 98 lla~~~~~ 105 (349)
++..-.-.
T Consensus 82 ~~~~i~~A 89 (542)
T PRK05858 82 GMSAMAAA 89 (542)
T ss_pred HHHHHHHH
Confidence 98765443
No 446
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=44.20 E-value=21 Score=37.69 Aligned_cols=32 Identities=25% Similarity=0.352 Sum_probs=27.4
Q ss_pred CCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 8 NSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
++..+++|+.|++++.+++. ++|+|||++|..
T Consensus 466 ~~~~v~~Dvtd~~~v~~a~~~i~~~~g~iDilV~nAG~~ 504 (676)
T TIGR02632 466 RAVALKMDVTDEQAVKAAFADVALAYGGVDIVVNNAGIA 504 (676)
T ss_pred cEEEEECCCCCHHHHHHHHHHHHHhcCCCcEEEECCCCC
Confidence 46688999999999988886 689999999843
No 447
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=44.11 E-value=1.1e+02 Score=31.62 Aligned_cols=79 Identities=16% Similarity=0.102 Sum_probs=56.3
Q ss_pred HHHHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHH-cCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcch
Q 018848 19 EGSLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIE-TKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGV 95 (349)
Q Consensus 19 ~~~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~-~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGl 95 (349)
.+.|.+.++ +++.|.-..|.+. .++.+++.+ .|++||....|....--. +..++..|...+.-+-..||+
T Consensus 7 ~~~l~~~L~~~Gv~~vFgvpG~~~----~~l~~al~~~~~i~~v~~rhE~~A~~mA---dgyar~tg~~gv~~~t~GpG~ 79 (572)
T PRK08979 7 ASMIVRSLIDEGVKHIFGYPGGSV----LDIYDALHEKSGIEHILVRHEQAAVHMA---DGYARATGKVGVVLVTSGPGA 79 (572)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcch----HHHHHHHhhcCCCeEEEeCcHHHHHHHH---HHHHHHhCCCeEEEECCCchH
Confidence 355666665 8899998777544 588898876 489999998876543222 444666776666666778999
Q ss_pred hHHHHHHHH
Q 018848 96 SNVMAAELV 104 (349)
Q Consensus 96 s~lla~~~~ 104 (349)
+|++..-+-
T Consensus 80 ~n~l~gia~ 88 (572)
T PRK08979 80 TNTITGIAT 88 (572)
T ss_pred hHHHHHHHH
Confidence 999876544
No 448
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=43.81 E-value=1.2e+02 Score=27.06 Aligned_cols=83 Identities=13% Similarity=0.074 Sum_probs=53.0
Q ss_pred CCCceEEEeCCCHH---HHHHHhcCC----cEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHH
Q 018848 7 KNSEFAEVNIYNEG---SLLMALRDV----DLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAI 79 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~---~l~~~~~~~----dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~ 79 (349)
..++.+.+-.+.++ .++++.+.. |++|- +| .-.. ..-++.|+++|+.|+=.-+ +.. ++-+.++
T Consensus 37 ~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vG-aG--TV~~-~~~~~~a~~aGA~FivsP~---~~~---~v~~~~~ 106 (213)
T PRK06552 37 GGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIG-AG--TVLD-AVTARLAILAGAQFIVSPS---FNR---ETAKICN 106 (213)
T ss_pred CCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEe-ee--eCCC-HHHHHHHHHcCCCEEECCC---CCH---HHHHHHH
Confidence 34677777777665 344444433 67774 56 3333 5778999999999987443 223 3345578
Q ss_pred HcCCcEEecCCcCcchhHHHHHH
Q 018848 80 AANIPAITTGGIYPGVSNVMAAE 102 (349)
Q Consensus 80 ~~g~~~v~~~G~~PGls~lla~~ 102 (349)
+.|+.++||+. .| +++...+
T Consensus 107 ~~~i~~iPG~~-T~--~E~~~A~ 126 (213)
T PRK06552 107 LYQIPYLPGCM-TV--TEIVTAL 126 (213)
T ss_pred HcCCCEECCcC-CH--HHHHHHH
Confidence 89999888874 33 5555543
No 449
>PRK07340 ornithine cyclodeaminase; Validated
Probab=43.74 E-value=6.8 Score=37.01 Aligned_cols=41 Identities=24% Similarity=0.084 Sum_probs=30.3
Q ss_pred HHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChh
Q 018848 21 SLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTI 66 (349)
Q Consensus 21 ~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~ 66 (349)
++.++++++|+||+|+. ... +++.+.++-|+|..-++.+.+
T Consensus 181 ~~~~av~~aDiVitaT~-s~~----Pl~~~~~~~g~hi~~iGs~~p 221 (304)
T PRK07340 181 DGEAIPEAVDLVVTATT-SRT----PVYPEAARAGRLVVAVGAFTP 221 (304)
T ss_pred CHHHHhhcCCEEEEccC-CCC----ceeCccCCCCCEEEecCCCCC
Confidence 35567789999999984 332 566667889998888886543
No 450
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=43.64 E-value=49 Score=29.54 Aligned_cols=66 Identities=11% Similarity=0.123 Sum_probs=47.5
Q ss_pred CceEEEeCCCHHHHHHHhc-CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEe
Q 018848 9 SEFAEVNIYNEGSLLMALR-DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAIT 87 (349)
Q Consensus 9 ~~~~~~Dv~d~~~l~~~~~-~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~ 87 (349)
+-.=.--+.+.++++++++ |++.+| .|..+ ..|+++|.+.|+.|+==+.... ++ .+|.+.|..+|-
T Consensus 68 ~~vGaGTV~~~~~~~~a~~aGA~Fiv---sP~~~---~~v~~~~~~~~i~~iPG~~T~~---E~----~~A~~~Gad~vk 134 (213)
T PRK06552 68 VLIGAGTVLDAVTARLAILAGAQFIV---SPSFN---RETAKICNLYQIPYLPGCMTVT---EI----VTALEAGSEIVK 134 (213)
T ss_pred eEEeeeeCCCHHHHHHHHHcCCCEEE---CCCCC---HHHHHHHHHcCCCEECCcCCHH---HH----HHHHHcCCCEEE
Confidence 4455567789999998887 999999 37676 6999999999999997554431 11 124457766554
No 451
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=43.44 E-value=1.1e+02 Score=31.69 Aligned_cols=78 Identities=17% Similarity=0.162 Sum_probs=55.7
Q ss_pred HHHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHc-CCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchh
Q 018848 20 GSLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIET-KTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVS 96 (349)
Q Consensus 20 ~~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~-Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls 96 (349)
+.|.+.++ +++.|.-..|-.. .+++++..+. |+.||..-.|....--. +.-+|..|...+.-+...||++
T Consensus 7 ~~l~~~L~~~GV~~vFg~pG~~~----~~l~dal~~~~~i~~i~~rhE~~A~~mA---dgyar~tgk~~v~~v~~GpG~~ 79 (578)
T PRK06546 7 EQLVEQLVAAGVKRIYGIVGDSL----NPIVDAVRRTGGIEWVHVRHEEAAAFAA---AAEAQLTGKLAVCAGSCGPGNL 79 (578)
T ss_pred HHHHHHHHHcCCCEEEECCCCch----HHHHHHHhccCCCeEEEeCcHHHHHHHH---HhHHHhhCCceEEEECCCCcHH
Confidence 44555554 8899997766433 5888888776 89999998776433222 3446777777787788899999
Q ss_pred HHHHHHHH
Q 018848 97 NVMAAELV 104 (349)
Q Consensus 97 ~lla~~~~ 104 (349)
|++..-+-
T Consensus 80 N~~~gl~~ 87 (578)
T PRK06546 80 HLINGLYD 87 (578)
T ss_pred HHHHHHHH
Confidence 98877544
No 452
>PLN02522 ATP citrate (pro-S)-lyase
Probab=43.29 E-value=45 Score=34.75 Aligned_cols=64 Identities=19% Similarity=0.165 Sum_probs=44.9
Q ss_pred HHHHHhc---CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEE
Q 018848 21 SLLMALR---DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAI 86 (349)
Q Consensus 21 ~l~~~~~---~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v 86 (349)
+++++++ ++|+.|+-+.|.+-. + .++++|.+.|+..+=+-.+---.....++.+.+++.|+.+|
T Consensus 68 tv~eA~~~~~~~~~~vifvp~~~a~-d-a~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~Ar~~g~rlI 134 (608)
T PLN02522 68 SIEAACKAHPTADVFINFASFRSAA-A-SSMEALKQPTIRVVAIIAEGVPESDTKQLIAYARANNKVVI 134 (608)
T ss_pred hHHHHHHhCCCCcEEEEeCChHHhH-H-HHHHHHhhCCCCEEEEECCCCChhhHHHHHHHHHHcCCEEE
Confidence 4455554 689999999765543 3 89999999999987764332112234578888999998765
No 453
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=43.10 E-value=52 Score=29.18 Aligned_cols=85 Identities=19% Similarity=0.200 Sum_probs=54.3
Q ss_pred CCCceEEEeCCCHHHHHHH---hcCC-cEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcC
Q 018848 7 KNSEFAEVNIYNEGSLLMA---LRDV-DLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAAN 82 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~---~~~~-dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g 82 (349)
..++.+.+-.++++.+..+ .+.+ ++.| -+| .-.. ..-++.|+++|++|+=.-.- .. ++-+.+++.|
T Consensus 28 gGi~~iEit~~tp~a~~~I~~l~~~~~~~~v-GAG--TVl~-~e~a~~ai~aGA~FivSP~~---~~---~vi~~a~~~~ 97 (201)
T PRK06015 28 GGLPAIEITLRTPAALDAIRAVAAEVEEAIV-GAG--TILN-AKQFEDAAKAGSRFIVSPGT---TQ---ELLAAANDSD 97 (201)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHHHCCCCEE-eeE--eCcC-HHHHHHHHHcCCCEEECCCC---CH---HHHHHHHHcC
Confidence 4577888888877655433 2233 5555 456 3333 57889999999999875442 22 3355588899
Q ss_pred CcEEecCCcCcchhHHHHHHHH
Q 018848 83 IPAITTGGIYPGVSNVMAAELV 104 (349)
Q Consensus 83 ~~~v~~~G~~PGls~lla~~~~ 104 (349)
+..+||+ +. +|.++..+-+
T Consensus 98 i~~iPG~-~T--ptEi~~A~~~ 116 (201)
T PRK06015 98 VPLLPGA-AT--PSEVMALREE 116 (201)
T ss_pred CCEeCCC-CC--HHHHHHHHHC
Confidence 9988877 33 3456555433
No 454
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=43.01 E-value=37 Score=29.99 Aligned_cols=83 Identities=23% Similarity=0.238 Sum_probs=49.4
Q ss_pred CCCceEEEeCCCHHHHHHH---hc-CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcC
Q 018848 7 KNSEFAEVNIYNEGSLLMA---LR-DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAAN 82 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~---~~-~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g 82 (349)
..++.+.+-.++++.++.+ .+ -.|++|- +| .-.. ..-++.|+++|++|+=.-+ +..+ +-+.+++.+
T Consensus 32 gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vG-AG--TV~~-~e~a~~a~~aGA~FivSP~---~~~~---v~~~~~~~~ 101 (196)
T PF01081_consen 32 GGIRAIEITLRTPNALEAIEALRKEFPDLLVG-AG--TVLT-AEQAEAAIAAGAQFIVSPG---FDPE---VIEYAREYG 101 (196)
T ss_dssp TT--EEEEETTSTTHHHHHHHHHHHHTTSEEE-EE--S--S-HHHHHHHHHHT-SEEEESS-----HH---HHHHHHHHT
T ss_pred CCCCEEEEecCCccHHHHHHHHHHHCCCCeeE-EE--eccC-HHHHHHHHHcCCCEEECCC---CCHH---HHHHHHHcC
Confidence 3477778877777554332 11 2466664 46 3333 5889999999999987644 3333 355578899
Q ss_pred CcEEecCCcCcchhHHHHHH
Q 018848 83 IPAITTGGIYPGVSNVMAAE 102 (349)
Q Consensus 83 ~~~v~~~G~~PGls~lla~~ 102 (349)
+..+||+ +.| |+++.++
T Consensus 102 i~~iPG~-~Tp--tEi~~A~ 118 (196)
T PF01081_consen 102 IPYIPGV-MTP--TEIMQAL 118 (196)
T ss_dssp SEEEEEE-SSH--HHHHHHH
T ss_pred CcccCCc-CCH--HHHHHHH
Confidence 9988887 333 4555444
No 455
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=43.00 E-value=1.2e+02 Score=31.03 Aligned_cols=79 Identities=14% Similarity=0.159 Sum_probs=57.6
Q ss_pred HHHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchhH
Q 018848 20 GSLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVSN 97 (349)
Q Consensus 20 ~~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls~ 97 (349)
+.+.+.++ +++.|.-+-|... .++.++..+.++.||..-.|....-- =+..+|..|...+..+-..||++|
T Consensus 6 ~~l~~~L~~~GV~~vFg~pG~~~----~~l~dal~~~~i~~v~~~hE~~A~~m---Adgyar~tgkpgv~~~t~GPG~~N 78 (549)
T PRK06457 6 EVIIRVLEDNGIQRIYGIPGDSI----DPLVDAIRKSKVKYVQVRHEEGAALA---ASVEAKITGKPSACMGTSGPGSIH 78 (549)
T ss_pred HHHHHHHHHcCCCEEEEcCCcch----HHHHHHHHhcCCeEEEeCcHHHHHHH---HHHHHHHhCCCeEEEeCCCCchhh
Confidence 34555555 8899998877433 58999988889999999887643222 244577788777777888999999
Q ss_pred HHHHHHHH
Q 018848 98 VMAAELVR 105 (349)
Q Consensus 98 lla~~~~~ 105 (349)
++..-+-.
T Consensus 79 ~l~~l~~A 86 (549)
T PRK06457 79 LLNGLYDA 86 (549)
T ss_pred hHHHHHHH
Confidence 99876544
No 456
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=42.99 E-value=1.3e+02 Score=31.11 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=57.6
Q ss_pred HHHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchhH
Q 018848 20 GSLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVSN 97 (349)
Q Consensus 20 ~~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls~ 97 (349)
+.|.+.++ +++.|.-.-|-+. .++.++..+.+..||....|....-.. +.-++..|.+.+.-+-..||++|
T Consensus 5 ~~l~~~L~~~Gv~~vFg~pG~~~----~~l~~al~~~~i~~i~~~hE~~A~~~A---dgyar~tg~~gv~~~t~GPG~~n 77 (586)
T PRK06276 5 EAIIKALEAEGVKIIFGYPGGAL----LPFYDALYDSDLIHILTRHEQAAAHAA---DGYARASGKVGVCVATSGPGATN 77 (586)
T ss_pred HHHHHHHHHcCCCEEEECCCcch----HHHHHHHHhCCCcEEEeccHHHHHHHH---HHHHHHhCCCEEEEECCCccHHH
Confidence 45556565 8899997766433 588888888899999998876443222 44567788778888888999999
Q ss_pred HHHHHHHH
Q 018848 98 VMAAELVR 105 (349)
Q Consensus 98 lla~~~~~ 105 (349)
.+..-+-.
T Consensus 78 ~l~~i~~A 85 (586)
T PRK06276 78 LVTGIATA 85 (586)
T ss_pred HHHHHHHH
Confidence 98765443
No 457
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=42.97 E-value=1.9e+02 Score=28.87 Aligned_cols=79 Identities=18% Similarity=0.230 Sum_probs=44.4
Q ss_pred CCCceEEEeCCCH--HHHHHHhc-------CCcEEE-EccCCCCCCCcHHHHHHHHHcCCCeEecCC-C-----h-----
Q 018848 7 KNSEFAEVNIYNE--GSLLMALR-------DVDLVV-HAAGPFQQAPKCTVLEAAIETKTAYIDVCD-D-----T----- 65 (349)
Q Consensus 7 ~~~~~~~~Dv~d~--~~l~~~~~-------~~dvVI-n~agP~~~~~~~~v~~aci~~Gv~YvDi~~-~-----~----- 65 (349)
..++.+.+|..+. ..+.++++ ++.+++ |++- ..-++.++++|++.|+++- . .
T Consensus 235 aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t-------~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~ 307 (450)
T TIGR01302 235 AGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVAT-------AEQAKALIDAGADGLRVGIGPGSICTTRIVAG 307 (450)
T ss_pred hCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCC-------HHHHHHHHHhCCCEEEECCCCCcCCccceecC
Confidence 3578888998422 11222222 455555 3332 5778999999999998761 1 0
Q ss_pred ---hHHHHHHHHHHHHHHcCCcEEecCCcC
Q 018848 66 ---IYSQRAKSFKDRAIAANIPAITTGGIY 92 (349)
Q Consensus 66 ---~~~~~~~~l~~~a~~~g~~~v~~~G~~ 92 (349)
+-...+.+..+.+++.+++++..-|..
T Consensus 308 ~g~p~~~~i~~~~~~~~~~~vpviadGGi~ 337 (450)
T TIGR01302 308 VGVPQITAVYDVAEYAAQSGIPVIADGGIR 337 (450)
T ss_pred CCccHHHHHHHHHHHHhhcCCeEEEeCCCC
Confidence 112223344555566777766655544
No 458
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=42.96 E-value=38 Score=32.94 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=19.6
Q ss_pred EeCCCHHHHHHHhcCCcEEEEccC
Q 018848 14 VNIYNEGSLLMALRDVDLVVHAAG 37 (349)
Q Consensus 14 ~Dv~d~~~l~~~~~~~dvVIn~ag 37 (349)
.+..+.+.+.+.++++|+||||++
T Consensus 216 ~~~~~~~~l~~~l~~aDvVI~a~~ 239 (370)
T TIGR00518 216 TRYSNAYEIEDAVKRADLLIGAVL 239 (370)
T ss_pred eccCCHHHHHHHHccCCEEEEccc
Confidence 455667788889999999999983
No 459
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=42.93 E-value=30 Score=29.15 Aligned_cols=53 Identities=8% Similarity=0.123 Sum_probs=35.9
Q ss_pred CceEEEeCCCHHHHHHHhc---------CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecC
Q 018848 9 SEFAEVNIYNEGSLLMALR---------DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVC 62 (349)
Q Consensus 9 ~~~~~~Dv~d~~~l~~~~~---------~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~ 62 (349)
.+.+..=+.|.+++++.+. .-+++|||.--..... ..+.+.+.+.|++|||..
T Consensus 58 ~dvvi~~v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~-~~~~~~~~~~g~~~vdap 119 (163)
T PF03446_consen 58 ADVVILCVPDDDAVEAVLFGENILAGLRPGKIIIDMSTISPETS-RELAERLAAKGVRYVDAP 119 (163)
T ss_dssp BSEEEE-SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHH-HHHHHHHHHTTEEEEEEE
T ss_pred ccceEeecccchhhhhhhhhhHHhhccccceEEEecCCcchhhh-hhhhhhhhhccceeeeee
Confidence 4667777788777766544 4579999875333333 478888889999999964
No 460
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=42.68 E-value=93 Score=31.28 Aligned_cols=75 Identities=13% Similarity=0.137 Sum_probs=44.3
Q ss_pred CCHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHH---HHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCc
Q 018848 17 YNEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEA---AIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYP 93 (349)
Q Consensus 17 ~d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~a---ci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~P 93 (349)
.+++++.+-++.+|+||-|+. -...-+ .|++. .++.|--.||.+... .....++.++.+++|+. .++||.+.
T Consensus 43 ~s~~e~v~~l~~~~~Ii~mv~-~g~~v~-~Vi~~l~~~l~~GdiiID~gn~~--~~~t~~~~~~l~~~Gi~-fvdapVSG 117 (459)
T PRK09287 43 YTLEEFVASLEKPRKILLMVK-AGAPVD-AVIEQLLPLLEKGDIIIDGGNSN--YKDTIRREKELAEKGIH-FIGMGVSG 117 (459)
T ss_pred CCHHHHHhhCCCCCEEEEECC-CchHHH-HHHHHHHhcCCCCCEEEECCCCC--HHHHHHHHHHHHhcCCe-EEecCCCC
Confidence 344555554556899998884 222111 34332 235577788987543 22233445667778874 88888888
Q ss_pred chh
Q 018848 94 GVS 96 (349)
Q Consensus 94 Gls 96 (349)
|..
T Consensus 118 G~~ 120 (459)
T PRK09287 118 GEE 120 (459)
T ss_pred CHH
Confidence 763
No 461
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.49 E-value=69 Score=29.83 Aligned_cols=52 Identities=8% Similarity=0.086 Sum_probs=36.5
Q ss_pred CCceEEEeCCCHHHHHHHhcC-----CcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCC
Q 018848 8 NSEFAEVNIYNEGSLLMALRD-----VDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCD 63 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~~-----~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~ 63 (349)
.++.+++|=.+++.+++.++- ..+.|.++|=- + +.=++...+.|+|+|.++.
T Consensus 202 GaDiI~LDn~~~e~l~~~v~~~~~~~~~~~ieAsGgI-t---~~ni~~ya~~GvD~IsvG~ 258 (273)
T PRK05848 202 GADIVMCDNMSVEEIKEVVAYRNANYPHVLLEASGNI-T---LENINAYAKSGVDAISSGS 258 (273)
T ss_pred CCCEEEECCCCHHHHHHHHHHhhccCCCeEEEEECCC-C---HHHHHHHHHcCCCEEEeCh
Confidence 367788888888888887762 36677777622 2 4566777888888888765
No 462
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=42.14 E-value=1.2e+02 Score=31.04 Aligned_cols=79 Identities=16% Similarity=0.140 Sum_probs=57.5
Q ss_pred HHHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHH-HcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchh
Q 018848 20 GSLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAI-ETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVS 96 (349)
Q Consensus 20 ~~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci-~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls 96 (349)
+.|.+.++ +++.|.-.-|.+. .++++++. +.+..||....|....-.. +..++..|.+.+..+-..||++
T Consensus 5 ~~l~~~L~~~Gv~~vFgvpG~~~----~~l~~~l~~~~~i~~i~~~hE~~A~~~A---dgyar~tg~~gv~~~t~GpG~~ 77 (558)
T TIGR00118 5 EAIIESLKDEGVKTVFGYPGGAI----LPIYDALYNDSGIEHILVRHEQGAAHAA---DGYARASGKVGVVLVTSGPGAT 77 (558)
T ss_pred HHHHHHHHHcCCCEEEeCCCcch----HHHHHHhhccCCceEEEeCcHHHHHHHH---HHHHHHhCCCEEEEECCCCcHH
Confidence 44556665 8899997766433 58999987 4789999999877533222 4457778877787888899999
Q ss_pred HHHHHHHHH
Q 018848 97 NVMAAELVR 105 (349)
Q Consensus 97 ~lla~~~~~ 105 (349)
|++..-+-.
T Consensus 78 n~l~~i~~A 86 (558)
T TIGR00118 78 NLVTGIATA 86 (558)
T ss_pred HHHHHHHHH
Confidence 998775443
No 463
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=42.12 E-value=84 Score=30.36 Aligned_cols=78 Identities=14% Similarity=0.102 Sum_probs=52.0
Q ss_pred CceEEEeCCCH---HHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCC-Chh-HHHHHHHHHHHHHHcCC
Q 018848 9 SEFAEVNIYNE---GSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCD-DTI-YSQRAKSFKDRAIAANI 83 (349)
Q Consensus 9 ~~~~~~Dv~d~---~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~-~~~-~~~~~~~l~~~a~~~g~ 83 (349)
-+.+++-+.|. +++....++..+=+-+ . .++. +.++..|+++|++-+=++- ... ..+++.++-+.|++.++
T Consensus 56 ceiVRvav~~~~~a~al~~I~~~~~iPlvA-D--IHFd-~~lAl~a~~~G~~~iRINPGNig~~~~~v~~vv~~ak~~~i 131 (360)
T PRK00366 56 CEIVRVAVPDMEAAAALPEIKKQLPVPLVA-D--IHFD-YRLALAAAEAGADALRINPGNIGKRDERVREVVEAAKDYGI 131 (360)
T ss_pred CCEEEEccCCHHHHHhHHHHHHcCCCCEEE-e--cCCC-HHHHHHHHHhCCCEEEECCCCCCchHHHHHHHHHHHHHCCC
Confidence 34555555544 4455555565543322 2 2233 7999999999999998873 332 35677788899999999
Q ss_pred cEEecCC
Q 018848 84 PAITTGG 90 (349)
Q Consensus 84 ~~v~~~G 90 (349)
++=+|.-
T Consensus 132 pIRIGvN 138 (360)
T PRK00366 132 PIRIGVN 138 (360)
T ss_pred CEEEecC
Confidence 9888753
No 464
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=42.04 E-value=21 Score=32.46 Aligned_cols=79 Identities=16% Similarity=0.219 Sum_probs=47.2
Q ss_pred CCCceEEEeCCCHHHHHHHhc-------CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHH
Q 018848 7 KNSEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAI 79 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~ 79 (349)
.++-+++.|+++..++++.++ ..|++||-+|=+.+. . .+.-| + +++++-..-... .|+-.-+
T Consensus 55 ~~v~F~~~DVt~~~~~~~~f~ki~~~fg~iDIlINgAGi~~dk---d-~e~Ti--~---vNLtgvin~T~~--alpyMdk 123 (261)
T KOG4169|consen 55 VSVIFIKCDVTNRGDLEAAFDKILATFGTIDILINGAGILDDK---D-WERTI--N---VNLTGVINGTQL--ALPYMDK 123 (261)
T ss_pred ceEEEEEeccccHHHHHHHHHHHHHHhCceEEEEcccccccch---h-HHHhh--c---cchhhhhhhhhh--hhhhhhh
Confidence 357899999999999988876 679999999955432 2 23333 2 333332211111 2222223
Q ss_pred HcC--CcEEecCCcCcchh
Q 018848 80 AAN--IPAITTGGIYPGVS 96 (349)
Q Consensus 80 ~~g--~~~v~~~G~~PGls 96 (349)
++| --+|+++|..-||-
T Consensus 124 ~~gG~GGiIvNmsSv~GL~ 142 (261)
T KOG4169|consen 124 KQGGKGGIIVNMSSVAGLD 142 (261)
T ss_pred hcCCCCcEEEEeccccccC
Confidence 342 23777777777763
No 465
>PRK06953 short chain dehydrogenase; Provisional
Probab=41.62 E-value=29 Score=30.43 Aligned_cols=31 Identities=19% Similarity=0.242 Sum_probs=26.0
Q ss_pred CceEEEeCCCHHHHHHHhc-----CCcEEEEccCCC
Q 018848 9 SEFAEVNIYNEGSLLMALR-----DVDLVVHAAGPF 39 (349)
Q Consensus 9 ~~~~~~Dv~d~~~l~~~~~-----~~dvVIn~agP~ 39 (349)
++++++|+.|.+++.+++. +.|+||+++|.+
T Consensus 46 ~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~~ag~~ 81 (222)
T PRK06953 46 AEALALDVADPASVAGLAWKLDGEALDAAVYVAGVY 81 (222)
T ss_pred ceEEEecCCCHHHHHHHHHHhcCCCCCEEEECCCcc
Confidence 5689999999999988642 479999999865
No 466
>PLN02700 homoserine dehydrogenase family protein
Probab=41.58 E-value=1.4e+02 Score=29.31 Aligned_cols=83 Identities=11% Similarity=0.090 Sum_probs=52.0
Q ss_pred CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchhHHH-HHHHHHH
Q 018848 28 DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVSNVM-AAELVRV 106 (349)
Q Consensus 28 ~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls~ll-a~~~~~~ 106 (349)
..+++|+|.+ .... ....+.+++.|+|.|-.+--. ......+|.+.+ ++|+.+...+-...|+.=+= .+.+.
T Consensus 109 ~~~ViVD~T~-s~~~--~~~y~~aL~~G~hVVTaNK~~-~a~~~~~~~~la-~~~~~~~yEatVgaGlPiI~tl~~ll-- 181 (377)
T PLN02700 109 TGLVVVDCSA-SMET--IGALNEAVDLGCCIVLANKKP-LTSTLEDYDKLA-AHPRRIRHESTVGAGLPVIASLNRIL-- 181 (377)
T ss_pred CCCEEEECCC-ChHH--HHHHHHHHHCCCeEEcCCchH-hccCHHHHHHHH-HcCCeEEEEeeeeeccchHHHHHHHh--
Confidence 4699999984 4444 478899999999999876422 222233444444 46888987776666654221 11222
Q ss_pred HhcccCCCCcEEEE
Q 018848 107 ARNESKGEPERLRF 120 (349)
Q Consensus 107 l~~~~~~~v~~i~i 120 (349)
...+++.+|+-
T Consensus 182 ---~sGd~I~~I~G 192 (377)
T PLN02700 182 ---SSGDPVHRIVG 192 (377)
T ss_pred ---hccCCEEEEEE
Confidence 12467888864
No 467
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=41.39 E-value=1.1e+02 Score=24.27 Aligned_cols=45 Identities=11% Similarity=0.059 Sum_probs=24.9
Q ss_pred CHHHHHHHhc-CCcEEEEccCCCCCC---CcHHHHHHHHHcCCCeEecC
Q 018848 18 NEGSLLMALR-DVDLVVHAAGPFQQA---PKCTVLEAAIETKTAYIDVC 62 (349)
Q Consensus 18 d~~~l~~~~~-~~dvVIn~agP~~~~---~~~~v~~aci~~Gv~YvDi~ 62 (349)
+++.+.++-+ |++.|||--++.-.. ....+.++|-++|..|+.+-
T Consensus 16 ~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iP 64 (110)
T PF04273_consen 16 SPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIP 64 (110)
T ss_dssp -HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE--
T ss_pred CHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEee
Confidence 5667776665 999999986432111 10146788999999999974
No 468
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=41.38 E-value=12 Score=35.79 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=29.2
Q ss_pred HHHHHhcCCcEEEEccCCCCCCCcHHHH-HHHHHcCCCeEecCCChh
Q 018848 21 SLLMALRDVDLVVHAAGPFQQAPKCTVL-EAAIETKTAYIDVCDDTI 66 (349)
Q Consensus 21 ~l~~~~~~~dvVIn~agP~~~~~~~~v~-~aci~~Gv~YvDi~~~~~ 66 (349)
++.+.++++|+||+|++ ... +++ ...++.|+|..++..+.+
T Consensus 187 ~~~~av~~aDiVvtaT~-s~~----p~i~~~~l~~g~~i~~vg~~~p 228 (326)
T TIGR02992 187 DPRAAMSGADIIVTTTP-SET----PILHAEWLEPGQHVTAMGSDAE 228 (326)
T ss_pred CHHHHhccCCEEEEecC-CCC----cEecHHHcCCCcEEEeeCCCCC
Confidence 45677889999999984 332 444 457788998888876543
No 469
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=41.00 E-value=42 Score=31.06 Aligned_cols=26 Identities=12% Similarity=0.259 Sum_probs=16.3
Q ss_pred EEEeCCCHHHHH----HHhc-----CCcEEEEccC
Q 018848 12 AEVNIYNEGSLL----MALR-----DVDLVVHAAG 37 (349)
Q Consensus 12 ~~~Dv~d~~~l~----~~~~-----~~dvVIn~ag 37 (349)
..+|+.|..+.. +.++ ++|+|||||+
T Consensus 43 ~~~~~~d~~~~~~~~~~~~~~~~~~~~d~Vih~A~ 77 (308)
T PRK11150 43 VDLDIADYMDKEDFLAQIMAGDDFGDIEAIFHEGA 77 (308)
T ss_pred hhhhhhhhhhHHHHHHHHhcccccCCccEEEECce
Confidence 456666654332 2322 6899999996
No 470
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=40.94 E-value=15 Score=34.52 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=26.7
Q ss_pred HHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecC
Q 018848 23 LMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVC 62 (349)
Q Consensus 23 ~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~ 62 (349)
.++++++|+||.|..++.. . ..+-++|.++++++|-..
T Consensus 100 ~~~l~~fdvVV~~~~~~~~-~-~~in~~c~~~~ipfI~a~ 137 (286)
T cd01491 100 TDELLKFQVVVLTDASLED-Q-LKINEFCHSPGIKFISAD 137 (286)
T ss_pred HHHHhcCCEEEEecCCHHH-H-HHHHHHHHHcCCEEEEEe
Confidence 3577889999999765432 2 367778888887777653
No 471
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=40.60 E-value=41 Score=32.45 Aligned_cols=43 Identities=5% Similarity=0.117 Sum_probs=35.5
Q ss_pred CHHHHHHHhcCCcEEEEccC-CCCCCCcHHHHHHHHHcCCCeEecCC
Q 018848 18 NEGSLLMALRDVDLVVHAAG-PFQQAPKCTVLEAAIETKTAYIDVCD 63 (349)
Q Consensus 18 d~~~l~~~~~~~dvVIn~ag-P~~~~~~~~v~~aci~~Gv~YvDi~~ 63 (349)
++...-+++++.|+|++|.. |..+ +-+-.+|.-.|.+.|.-+.
T Consensus 146 ~~sNa~~Ii~~YdvVlDCTDN~~TR---YLisD~CVlLgkpLVSgSa 189 (427)
T KOG2017|consen 146 SSSNAFDIIKQYDVVLDCTDNVPTR---YLISDVCVLLGKPLVSGSA 189 (427)
T ss_pred cchhHHHHhhccceEEEcCCCccch---hhhhhHHHHcCCccccccc
Confidence 55566788999999999994 5555 7899999999999988664
No 472
>PRK08611 pyruvate oxidase; Provisional
Probab=40.58 E-value=1.4e+02 Score=30.77 Aligned_cols=79 Identities=18% Similarity=0.149 Sum_probs=56.2
Q ss_pred HHHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHH--cCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcch
Q 018848 20 GSLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIE--TKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGV 95 (349)
Q Consensus 20 ~~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~--~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGl 95 (349)
+.|.+.++ +++.|.-.-|.+. .++++++.+ .++.||....|....-.. +..+|..|...+.-+-..||.
T Consensus 8 ~~l~~~L~~~GV~~vFgipG~~~----~~l~dal~~~~~~i~~i~~rhE~~A~~mA---dgyar~tg~~gv~~~t~GPG~ 80 (576)
T PRK08611 8 EALVKLLQDWGIDHVYGIPGDSI----DAVVDALRKEQDKIKFIQVRHEEVAALAA---AAYAKLTGKIGVCLSIGGPGA 80 (576)
T ss_pred HHHHHHHHHcCCCEEEecCCcch----HHHHHHHHhcCCCCeEEEeCcHHHHHHHH---HHHHHHhCCceEEEECCCCcH
Confidence 45666665 8899998777433 589999875 589999988776433222 344666776777777788999
Q ss_pred hHHHHHHHHH
Q 018848 96 SNVMAAELVR 105 (349)
Q Consensus 96 s~lla~~~~~ 105 (349)
+|++..-+-.
T Consensus 81 ~N~l~gla~A 90 (576)
T PRK08611 81 IHLLNGLYDA 90 (576)
T ss_pred HHHHHHHHHH
Confidence 9999875543
No 473
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=40.52 E-value=58 Score=29.35 Aligned_cols=83 Identities=10% Similarity=0.020 Sum_probs=52.7
Q ss_pred CCCceEEEeCCCHHHHHH---Hh----cC-CcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHH
Q 018848 7 KNSEFAEVNIYNEGSLLM---AL----RD-VDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRA 78 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~---~~----~~-~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a 78 (349)
..++.+.+-.+.++.+.. +. ++ -|++| .+| .-.. ..-+++|+++|++|+=.-+.. . ++-+.+
T Consensus 39 gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~v-GaG--TVl~-~e~a~~a~~aGA~FiVsP~~~---~---~v~~~~ 108 (222)
T PRK07114 39 GGARVFEFTNRGDFAHEVFAELVKYAAKELPGMIL-GVG--SIVD-AATAALYIQLGANFIVTPLFN---P---DIAKVC 108 (222)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEE-eeE--eCcC-HHHHHHHHHcCCCEEECCCCC---H---HHHHHH
Confidence 357777787766554433 32 22 35666 456 3333 588899999999998765432 2 335557
Q ss_pred HHcCCcEEecCCcCcchhHHHHHH
Q 018848 79 IAANIPAITTGGIYPGVSNVMAAE 102 (349)
Q Consensus 79 ~~~g~~~v~~~G~~PGls~lla~~ 102 (349)
++.|+..+||+ +.| |+++..+
T Consensus 109 ~~~~i~~iPG~-~Tp--sEi~~A~ 129 (222)
T PRK07114 109 NRRKVPYSPGC-GSL--SEIGYAE 129 (222)
T ss_pred HHcCCCEeCCC-CCH--HHHHHHH
Confidence 88999988887 333 4555544
No 474
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=40.47 E-value=87 Score=28.75 Aligned_cols=46 Identities=20% Similarity=0.178 Sum_probs=35.2
Q ss_pred CCCHHHHHHHhc-CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCC
Q 018848 16 IYNEGSLLMALR-DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCD 63 (349)
Q Consensus 16 v~d~~~l~~~~~-~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~ 63 (349)
.-+++.+.+++. +.|.||+|.. ..... ..++..|.+++++.|...|
T Consensus 108 f~t~en~~~~~~~~~DyvIDaiD-~v~~K-v~Li~~c~~~ki~vIss~G 154 (263)
T COG1179 108 FITEENLEDLLSKGFDYVIDAID-SVRAK-VALIAYCRRNKIPVISSMG 154 (263)
T ss_pred hhCHhHHHHHhcCCCCEEEEchh-hhHHH-HHHHHHHHHcCCCEEeecc
Confidence 336778888877 6999999985 34444 5788889999998888776
No 475
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=40.25 E-value=1.5e+02 Score=30.58 Aligned_cols=77 Identities=18% Similarity=0.230 Sum_probs=53.9
Q ss_pred HHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHc--CCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchh
Q 018848 21 SLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIET--KTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVS 96 (349)
Q Consensus 21 ~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~--Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls 96 (349)
.+.+.++ +++.|.--.|-+. .++++++.+. |++||....|....--. +..++..|...+.-+...||++
T Consensus 4 ~l~~~L~~~GV~~vFgvpG~~~----~~l~dal~~~~~~i~~v~~rhE~~A~~~A---dgyar~tgk~gv~~~t~GPG~~ 76 (575)
T TIGR02720 4 AVLKVLEAWGVDHIYGIPGGSF----NSTMDALSAERDRIHYIQVRHEEVGALAA---AADAKLTGKIGVCFGSAGPGAT 76 (575)
T ss_pred HHHHHHHHcCCCEEEECCCcch----HHHHHHHHhcCCCCcEEEeccHHHHHHHH---HHHHHhhCCceEEEeCCCCcHH
Confidence 3444444 7888887666433 5898988764 79999998876432222 4456777877777777899999
Q ss_pred HHHHHHHH
Q 018848 97 NVMAAELV 104 (349)
Q Consensus 97 ~lla~~~~ 104 (349)
|++..-+-
T Consensus 77 n~~~~i~~ 84 (575)
T TIGR02720 77 HLLNGLYD 84 (575)
T ss_pred HHHHHHHH
Confidence 99876544
No 476
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=40.02 E-value=36 Score=33.71 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=25.8
Q ss_pred CceEEEeCCCHHHHHHHhc-------CCcEEEEccCCC
Q 018848 9 SEFAEVNIYNEGSLLMALR-------DVDLVVHAAGPF 39 (349)
Q Consensus 9 ~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~agP~ 39 (349)
.+++++|+.|.+++.++++ +.|+||||+|..
T Consensus 258 ~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~vi~~AG~~ 295 (450)
T PRK08261 258 GTALALDITAPDAPARIAEHLAERHGGLDIVVHNAGIT 295 (450)
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHhCCCCCEEEECCCcC
Confidence 4678999999998888765 579999999843
No 477
>PLN02996 fatty acyl-CoA reductase
Probab=39.73 E-value=28 Score=35.19 Aligned_cols=32 Identities=16% Similarity=0.167 Sum_probs=27.0
Q ss_pred CCCceEEEeCC-------CHHHHHHHhcCCcEEEEccCC
Q 018848 7 KNSEFAEVNIY-------NEGSLLMALRDVDLVVHAAGP 38 (349)
Q Consensus 7 ~~~~~~~~Dv~-------d~~~l~~~~~~~dvVIn~agP 38 (349)
.+++++..|+. |.+.+.++++++|+|||||+.
T Consensus 84 ~kv~~i~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~ 122 (491)
T PLN02996 84 EKVTPVPGDISYDDLGVKDSNLREEMWKEIDIVVNLAAT 122 (491)
T ss_pred cCEEEEecccCCcCCCCChHHHHHHHHhCCCEEEECccc
Confidence 56889999998 556678889999999999974
No 478
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=39.67 E-value=92 Score=28.05 Aligned_cols=46 Identities=11% Similarity=0.068 Sum_probs=30.5
Q ss_pred HHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChh
Q 018848 20 GSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTI 66 (349)
Q Consensus 20 ~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~ 66 (349)
..+.+.+.+..+|--.-+...... .++++++++.|+..+-++-..+
T Consensus 6 ~~~~~~l~~~~vi~Vvr~~~~~~a-~~~~~al~~gGi~~iEiT~~tp 51 (222)
T PRK07114 6 IAVLTAMKATGMVPVFYHADVEVA-KKVIKACYDGGARVFEFTNRGD 51 (222)
T ss_pred HHHHHHHHhCCEEEEEEcCCHHHH-HHHHHHHHHCCCCEEEEeCCCC
Confidence 345555655544433333334444 6999999999999999997653
No 479
>PLN02438 inositol-3-phosphate synthase
Probab=39.47 E-value=48 Score=33.46 Aligned_cols=56 Identities=16% Similarity=0.129 Sum_probs=34.7
Q ss_pred HHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchh---HHHHHHHHH
Q 018848 46 TVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVS---NVMAAELVR 105 (349)
Q Consensus 46 ~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls---~lla~~~~~ 105 (349)
--+.||+++||.||+-+-...+.. .+.+.|+++|+++. |-=+--|-| ..|+..+..
T Consensus 266 ~YA~AAl~eG~~fVNgsP~~t~vP---~~~elA~~~gvpi~-GDD~KSGqT~~ksvLa~~l~~ 324 (510)
T PLN02438 266 LYALACILEGVPFINGSPQNTFVP---GVIELAVKKNSLIG-GDDFKSGQTKMKSVLVDFLVG 324 (510)
T ss_pred HHHHHHHHcCCCeEecCCccccCh---hhHHHHHHcCCCEe-cccccCCCchhHHHHHHHHHH
Confidence 346789999999999876444433 34556778888744 332323544 455555553
No 480
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=39.33 E-value=1.5e+02 Score=30.42 Aligned_cols=80 Identities=21% Similarity=0.128 Sum_probs=58.3
Q ss_pred HHHHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHc-CCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcch
Q 018848 19 EGSLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIET-KTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGV 95 (349)
Q Consensus 19 ~~~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~-Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGl 95 (349)
.+.|.+.++ +++.|.-.-|.+. .++++++.+. ++.||....|....-.. +..++..|...+.-+-.-||+
T Consensus 11 ~~~l~~~L~~~GV~~vFg~pG~~~----~~l~~al~~~~~i~~v~~rhE~~A~~~A---dgyar~tg~~gv~~~t~GpG~ 83 (557)
T PRK08199 11 GQILVDALRANGVERVFCVPGESY----LAVLDALHDETDIRVIVCRQEGGAAMMA---EAYGKLTGRPGICFVTRGPGA 83 (557)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcch----hHHHHHhhccCCCcEEEeccHHHHHHHH---HHHHHhcCCCEEEEeCCCccH
Confidence 355666665 8899998777433 5899998877 49999998876543222 444677887777777789999
Q ss_pred hHHHHHHHHH
Q 018848 96 SNVMAAELVR 105 (349)
Q Consensus 96 s~lla~~~~~ 105 (349)
+|.+..-+..
T Consensus 84 ~N~~~gi~~A 93 (557)
T PRK08199 84 TNASIGVHTA 93 (557)
T ss_pred HHHHHHHHHH
Confidence 9999876553
No 481
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=39.30 E-value=19 Score=29.98 Aligned_cols=52 Identities=15% Similarity=0.117 Sum_probs=36.0
Q ss_pred CCceEEEeCCCHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCCh
Q 018848 8 NSEFAEVNIYNEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDT 65 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~ 65 (349)
+.+...+|-.. .++.+.++++|+||.++|--. -+-..=++.|++.+|++-+.
T Consensus 52 gatV~~~~~~t-~~l~~~v~~ADIVvsAtg~~~-----~i~~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 52 GATVYSCDWKT-IQLQSKVHDADVVVVGSPKPE-----KVPTEWIKPGATVINCSPTK 103 (140)
T ss_pred CCEEEEeCCCC-cCHHHHHhhCCEEEEecCCCC-----ccCHHHcCCCCEEEEcCCCc
Confidence 35556666443 358889999999999998211 23345578999999987543
No 482
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=39.24 E-value=36 Score=35.72 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=23.5
Q ss_pred eEEEeCCCHHHHHHHhc--CCcEEEEccCC
Q 018848 11 FAEVNIYNEGSLLMALR--DVDLVVHAAGP 38 (349)
Q Consensus 11 ~~~~Dv~d~~~l~~~~~--~~dvVIn~agP 38 (349)
+...|+.|.+++.+.++ ++|+|||||+.
T Consensus 409 ~~~~~l~d~~~v~~~i~~~~pd~Vih~Aa~ 438 (668)
T PLN02260 409 YGKGRLEDRSSLLADIRNVKPTHVFNAAGV 438 (668)
T ss_pred eeccccccHHHHHHHHHhhCCCEEEECCcc
Confidence 45568899999988887 78999999973
No 483
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=39.12 E-value=38 Score=28.14 Aligned_cols=60 Identities=18% Similarity=0.259 Sum_probs=38.4
Q ss_pred cccCCCCceEEEeCCCH--HHHHHHhcC-CcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCC
Q 018848 3 STLGKNSEFAEVNIYNE--GSLLMALRD-VDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDD 64 (349)
Q Consensus 3 ~~l~~~~~~~~~Dv~d~--~~l~~~~~~-~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~ 64 (349)
++++-.++++|-+.+-. +.+.+...+ .++|||.++ |..+. ..+-+|+....++.|.+-=+
T Consensus 39 ~~~g~~v~~~QSN~Eg~Lid~Ihea~~~~~~IvINpga-~THTS-vAlrDAi~av~iP~vEVHlS 101 (146)
T COG0757 39 AKLGVEVEFRQSNHEGELIDWIHEARGKAGDIVINPGA-YTHTS-VALRDAIAAVSIPVVEVHLS 101 (146)
T ss_pred HHcCceEEEEecCchHHHHHHHHHhhccCCeEEEcCcc-chhhH-HHHHHHHHhcCCCEEEEEec
Confidence 34555566666665421 233333334 349999864 66666 57888999999999986543
No 484
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=39.01 E-value=43 Score=31.06 Aligned_cols=60 Identities=12% Similarity=0.052 Sum_probs=35.4
Q ss_pred HHHHhcCCcEEEEccCCCCCCCcHHHH------HHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcE
Q 018848 22 LLMALRDVDLVVHAAGPFQQAPKCTVL------EAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPA 85 (349)
Q Consensus 22 l~~~~~~~dvVIn~agP~~~~~~~~v~------~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~ 85 (349)
+.++++++|+||.|+.+.... ..++ ..+++.|..++|++.-.+ ....++.+..++.|..+
T Consensus 52 ~~e~~~~~d~vi~~vp~~~~~--~~v~~~~~~~~~~~~~g~iiid~st~~~--~~~~~l~~~~~~~g~~~ 117 (296)
T PRK11559 52 AKAVAEQCDVIITMLPNSPHV--KEVALGENGIIEGAKPGTVVIDMSSIAP--LASREIAAALKAKGIEM 117 (296)
T ss_pred HHHHHhcCCEEEEeCCCHHHH--HHHHcCcchHhhcCCCCcEEEECCCCCH--HHHHHHHHHHHHcCCcE
Confidence 456678999999998533321 1232 233467889999886543 22223444555566654
No 485
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=38.67 E-value=1.6e+02 Score=30.46 Aligned_cols=78 Identities=17% Similarity=0.136 Sum_probs=55.6
Q ss_pred HHHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchhH
Q 018848 20 GSLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVSN 97 (349)
Q Consensus 20 ~~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls~ 97 (349)
+.+.+.++ +++.|.---|-+. .++.++..+.|+.||....|....--. +..++..|...+..+-..||.+|
T Consensus 6 ~~l~~~L~~~GV~~vFGipG~~~----~~l~dal~~~~i~~i~~rhE~~A~~~A---dgyar~tg~~gv~~~t~GPG~~N 78 (579)
T TIGR03457 6 EAFVEVLVANGVTHAFGIMGSAF----MDAMDLFPPAGIRFIPVVHEQGAGHMA---DGFARVTGRMSMVIGQNGPGVTN 78 (579)
T ss_pred HHHHHHHHHCCCCEEEEccCcch----HHHHHHHhhcCCeEEEeccHHHHHHHH---HHHHHHhCCCEEEEECCCchHHH
Confidence 44555554 8899987666333 588898888899999998876433222 44466777777777778999999
Q ss_pred HHHHHHH
Q 018848 98 VMAAELV 104 (349)
Q Consensus 98 lla~~~~ 104 (349)
++..-+-
T Consensus 79 ~~~gla~ 85 (579)
T TIGR03457 79 CVTAIAA 85 (579)
T ss_pred HHHHHHH
Confidence 8876544
No 486
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=38.64 E-value=78 Score=29.83 Aligned_cols=53 Identities=15% Similarity=0.146 Sum_probs=38.6
Q ss_pred CCCceEEEeCCCHHHHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCC
Q 018848 7 KNSEFAEVNIYNEGSLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCD 63 (349)
Q Consensus 7 ~~~~~~~~Dv~d~~~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~ 63 (349)
..++.+++|=.+++.++++++ +..+++.++| --+ ..=+++=.+.|++||.++.
T Consensus 224 aGaDiImLDnmspe~l~~av~~~~~~~~lEaSG--GIt--~~ni~~yA~tGVD~IS~ga 278 (294)
T PRK06978 224 HGAQSVLLDNFTLDMMREAVRVTAGRAVLEVSG--GVN--FDTVRAFAETGVDRISIGA 278 (294)
T ss_pred cCCCEEEECCCCHHHHHHHHHhhcCCeEEEEEC--CCC--HHHHHHHHhcCCCEEEeCc
Confidence 457888888888888888876 3467788887 322 3445666778999988875
No 487
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=38.64 E-value=1.4e+02 Score=30.85 Aligned_cols=83 Identities=17% Similarity=0.132 Sum_probs=58.8
Q ss_pred eCCCHHHHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHc-CCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCc
Q 018848 15 NIYNEGSLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIET-KTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGI 91 (349)
Q Consensus 15 Dv~d~~~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~-Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~ 91 (349)
+.+-.+.|.+.++ +++.|.-.-|-+. .++.++..+. |+.||....|....--. +..+|..|...+..+-.
T Consensus 20 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~----~~l~dal~~~~~i~~i~~rhE~~A~~~A---dgYar~tg~~gv~~~t~ 92 (587)
T PRK06965 20 DSIGAEILMKALAAEGVEFIWGYPGGAV----LYIYDELYKQDKIQHVLVRHEQAAVHAA---DGYARATGKVGVALVTS 92 (587)
T ss_pred hccHHHHHHHHHHHcCCCEEEecCCcch----HHHHHHHhhcCCCeEEEeCCHHHHHHHH---HHHHHHhCCCeEEEECC
Confidence 3334567777776 8899997666333 5898998764 89999998876433222 44577777667777777
Q ss_pred CcchhHHHHHHHH
Q 018848 92 YPGVSNVMAAELV 104 (349)
Q Consensus 92 ~PGls~lla~~~~ 104 (349)
.||++|++..-+-
T Consensus 93 GpG~~N~l~gl~~ 105 (587)
T PRK06965 93 GPGVTNAVTGIAT 105 (587)
T ss_pred CccHHHHHHHHHH
Confidence 9999999876544
No 488
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.
Probab=38.24 E-value=31 Score=29.30 Aligned_cols=37 Identities=24% Similarity=0.140 Sum_probs=27.1
Q ss_pred CceEEEeCCCHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHHHHc
Q 018848 9 SEFAEVNIYNEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAAIET 54 (349)
Q Consensus 9 ~~~~~~Dv~d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~aci~~ 54 (349)
++.++-|+.+. ++|+|||++.+....+. .+..+-.++
T Consensus 2 i~i~~GdI~~~--------~~daIVn~an~~l~~~g-gv~~ai~~~ 38 (165)
T cd02908 2 IEIIQGDITKL--------EVDAIVNAANSSLLGGG-GVDGAIHRA 38 (165)
T ss_pred eEEEeccccee--------ecCEEEECCCCcccCCC-cHHHHHHHH
Confidence 56677777753 48999999998887774 676665553
No 489
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=38.22 E-value=26 Score=33.31 Aligned_cols=40 Identities=15% Similarity=0.102 Sum_probs=31.7
Q ss_pred HHhcCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChh
Q 018848 24 MALRDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTI 66 (349)
Q Consensus 24 ~~~~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~ 66 (349)
..++++|+|+-|++ .... ..++..+.+.|+..||.+++..
T Consensus 46 ~~~~~~DvvFlalp--~~~s-~~~~~~~~~~g~~VIDlSadfR 85 (313)
T PRK11863 46 ELLNAADVAILCLP--DDAA-REAVALIDNPATRVIDASTAHR 85 (313)
T ss_pred hhhcCCCEEEECCC--HHHH-HHHHHHHHhCCCEEEECChhhh
Confidence 44568999999985 3344 5888888899999999998763
No 490
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=38.02 E-value=1.5e+02 Score=30.39 Aligned_cols=80 Identities=15% Similarity=0.084 Sum_probs=57.0
Q ss_pred HHHHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHc-CCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcch
Q 018848 19 EGSLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIET-KTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGV 95 (349)
Q Consensus 19 ~~~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~-Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGl 95 (349)
.+.|.+.++ +++.|.-.-|.+. .++.+++.+. |+.||....|.....-. +.-++..|...+..+-..||+
T Consensus 6 ~~~l~~~L~~~Gv~~vFgipG~~~----~~l~~~l~~~~~i~~v~~rhE~~A~~~A---dgyar~tg~~gv~~~t~GpG~ 78 (563)
T PRK08527 6 SQMVCEALKEEGVKVVFGYPGGAI----LNIYDEIYKQNYFKHILTRHEQAAVHAA---DGYARASGKVGVAIVTSGPGF 78 (563)
T ss_pred HHHHHHHHHHcCCCEEEECCCcch----HHHHHHHhccCCCeEEEeccHHHHHHHH---HHHHhhhCCCEEEEECCCCcH
Confidence 355666666 8899998766433 5899998764 89999998876543322 444666776667666779999
Q ss_pred hHHHHHHHHH
Q 018848 96 SNVMAAELVR 105 (349)
Q Consensus 96 s~lla~~~~~ 105 (349)
+|++..-+-.
T Consensus 79 ~n~~~gla~A 88 (563)
T PRK08527 79 TNAVTGLATA 88 (563)
T ss_pred HHHHHHHHHH
Confidence 9998775543
No 491
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=37.87 E-value=61 Score=30.57 Aligned_cols=30 Identities=23% Similarity=0.412 Sum_probs=26.2
Q ss_pred CCceEEEeCCCHHHHHHHhc-------CCcEEEEccC
Q 018848 8 NSEFAEVNIYNEGSLLMALR-------DVDLVVHAAG 37 (349)
Q Consensus 8 ~~~~~~~Dv~d~~~l~~~~~-------~~dvVIn~ag 37 (349)
++..-++|+.|.+++.+..+ +.|++||-||
T Consensus 87 ~~~~y~cdis~~eei~~~a~~Vk~e~G~V~ILVNNAG 123 (300)
T KOG1201|consen 87 EAKAYTCDISDREEIYRLAKKVKKEVGDVDILVNNAG 123 (300)
T ss_pred ceeEEEecCCCHHHHHHHHHHHHHhcCCceEEEeccc
Confidence 67889999999998877665 8899999998
No 492
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=37.45 E-value=2.2e+02 Score=23.27 Aligned_cols=64 Identities=16% Similarity=0.146 Sum_probs=39.0
Q ss_pred eCCCHH--HHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCCh-hHHHHHHHHHHHHHHcC
Q 018848 15 NIYNEG--SLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDT-IYSQRAKSFKDRAIAAN 82 (349)
Q Consensus 15 Dv~d~~--~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~-~~~~~~~~l~~~a~~~g 82 (349)
|.+|.. -+..+++ +.+|+- .|.+.. . ..++++|++.+++.|=+|.-. .+.+.+.++-++-+++|
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~--lg~~~s-~-e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g 81 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDV--GPLFQT-P-EEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLG 81 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEE--CCCCCC-H-HHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcC
Confidence 555543 2344555 554443 355544 3 388999999999999998755 34455555555555554
No 493
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=37.36 E-value=1.6e+02 Score=30.34 Aligned_cols=78 Identities=15% Similarity=0.063 Sum_probs=55.7
Q ss_pred HHHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHH-cCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchh
Q 018848 20 GSLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIE-TKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVS 96 (349)
Q Consensus 20 ~~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~-~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls 96 (349)
+.+.+.++ +++.|.---|.+. .++.+++.+ .|+.||....|....--. +.-++..|...+.-+...||++
T Consensus 8 ~~l~~~L~~~Gv~~vFgvpG~~~----~~l~d~l~~~~~i~~i~~rhE~~A~~mA---dgYar~tg~~gv~~~t~GPG~~ 80 (574)
T PRK07979 8 EMVVRSLIDQGVKQVFGYPGGAV----LDIYDALHTVGGIDHVLVRHEQAAVHMA---DGLARATGEVGVVLVTSGPGAT 80 (574)
T ss_pred HHHHHHHHHcCCCEEEEccCcch----HHHHHHHHhcCCceEEEeCcHHHHHHHH---HHHHHHhCCceEEEECCCccHh
Confidence 45666665 7898987666433 589999876 589999998876433222 4446667766777777899999
Q ss_pred HHHHHHHH
Q 018848 97 NVMAAELV 104 (349)
Q Consensus 97 ~lla~~~~ 104 (349)
|++..-+-
T Consensus 81 n~l~gi~~ 88 (574)
T PRK07979 81 NAITGIAT 88 (574)
T ss_pred hhHHHHHH
Confidence 99876544
No 494
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=37.23 E-value=2.7e+02 Score=27.54 Aligned_cols=9 Identities=11% Similarity=0.298 Sum_probs=4.7
Q ss_pred eeeCCeEEE
Q 018848 148 AYNKGEEIT 156 (349)
Q Consensus 148 ~~~~G~~~~ 156 (349)
++.||+..+
T Consensus 299 ~~~~g~~~K 307 (404)
T PRK06843 299 IIYNGKKFK 307 (404)
T ss_pred EEECCEEEE
Confidence 335666543
No 495
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=37.17 E-value=1.5e+02 Score=30.38 Aligned_cols=78 Identities=17% Similarity=0.113 Sum_probs=55.2
Q ss_pred HHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHcC-CCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchhH
Q 018848 21 SLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIETK-TAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVSN 97 (349)
Q Consensus 21 ~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~G-v~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls~ 97 (349)
.|.+.++ +++.|.-..|-+. .++++++.+.+ ++||....|....-.. +..||..|...+..+-..||.+|
T Consensus 5 ~l~~~L~~~Gv~~vFGvpG~~~----~~l~~al~~~~~i~~v~~rhE~~A~~~A---dgyar~tg~~gv~~~t~GpG~~n 77 (535)
T TIGR03394 5 ALLRALKDRGAQEMFGIPGDFA----LPFFKVIEETGILPLHTLSHEPAVGFAA---DAAARYRGTLGVAAVTYGAGAFN 77 (535)
T ss_pred HHHHHHHHcCCCEEEECCCccc----HHHHHHHhhCCCCeEEcccCcchHHHHH---hHHHHhhCCceEEEEecchHHHh
Confidence 3455554 8899997766433 58999988887 8999998877432222 34466677666666778899999
Q ss_pred HHHHHHHH
Q 018848 98 VMAAELVR 105 (349)
Q Consensus 98 lla~~~~~ 105 (349)
++..-+-.
T Consensus 78 ~~~gia~A 85 (535)
T TIGR03394 78 MVNAIAGA 85 (535)
T ss_pred hhhHHHHH
Confidence 98775553
No 496
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=37.12 E-value=1.7e+02 Score=30.29 Aligned_cols=79 Identities=13% Similarity=0.140 Sum_probs=55.7
Q ss_pred HHHHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchh
Q 018848 19 EGSLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVS 96 (349)
Q Consensus 19 ~~~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls 96 (349)
.+.|.+.|+ +++.|.--.|-+. .++.+++.+.|+.||....|....-- -+..++..|...+.-+-..||++
T Consensus 9 ~~~l~~~L~~~GV~~vFGvpG~~~----~~l~dal~~~~i~~i~~rhE~~A~~~---Adgyar~tg~~gv~~~t~GPG~~ 81 (588)
T PRK07525 9 SEAFVETLQAHGITHAFGIIGSAF----MDASDLFPPAGIRFIDVAHEQNAGHM---ADGYTRVTGRMGMVIGQNGPGIT 81 (588)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCch----HHHHHHHhccCCCEEEecCHHHHHHH---HHHHHHHhCCCEEEEEcCCccHH
Confidence 355666666 7888887666333 58999887779999999887643322 24456667766666666779999
Q ss_pred HHHHHHHH
Q 018848 97 NVMAAELV 104 (349)
Q Consensus 97 ~lla~~~~ 104 (349)
|++..-+-
T Consensus 82 n~~~gi~~ 89 (588)
T PRK07525 82 NFVTAVAT 89 (588)
T ss_pred HHHHHHHH
Confidence 99976544
No 497
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=37.06 E-value=1.5e+02 Score=30.50 Aligned_cols=79 Identities=20% Similarity=0.185 Sum_probs=57.2
Q ss_pred HHHHHHhc--CCcEEEEccCCCCCCCcHHHHHHHHH-cCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchh
Q 018848 20 GSLLMALR--DVDLVVHAAGPFQQAPKCTVLEAAIE-TKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVS 96 (349)
Q Consensus 20 ~~l~~~~~--~~dvVIn~agP~~~~~~~~v~~aci~-~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls 96 (349)
+.|.+.++ +++.|.-..|-+. .++.++..+ .++.||....|....--. +..+|..|.+.+.-+-.-||++
T Consensus 8 ~~l~~~L~~~Gv~~vFgipG~~~----~~l~~al~~~~~i~~i~~rhE~~A~~mA---dgyar~tg~~gv~~vt~GPG~~ 80 (574)
T PRK06466 8 EMLVRALRDEGVEYIYGYPGGAV----LHIYDALFKQDKVEHILVRHEQAATHMA---DGYARATGKTGVVLVTSGPGAT 80 (574)
T ss_pred HHHHHHHHHcCCCEEEECCCcch----hHHHHHhhccCCceEEEeCcHHHHHHHH---HHHHHHhCCCEEEEECCCccHH
Confidence 55666665 8899998877433 588888865 589999998876433222 4456777777777777899999
Q ss_pred HHHHHHHHH
Q 018848 97 NVMAAELVR 105 (349)
Q Consensus 97 ~lla~~~~~ 105 (349)
|++..-+-.
T Consensus 81 N~l~gl~~A 89 (574)
T PRK06466 81 NAITGIATA 89 (574)
T ss_pred HHHHHHHHH
Confidence 999775543
No 498
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=36.65 E-value=58 Score=30.45 Aligned_cols=74 Identities=19% Similarity=0.027 Sum_probs=46.3
Q ss_pred CCHHHHHHHhcCCcEEEEccCCCCCCCcHHHHHHH---HHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCc
Q 018848 17 YNEGSLLMALRDVDLVVHAAGPFQQAPKCTVLEAA---IETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYP 93 (349)
Q Consensus 17 ~d~~~l~~~~~~~dvVIn~agP~~~~~~~~v~~ac---i~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~P 93 (349)
.+.+++.+.++++|+|+-|+.+. .. ..+++.. ++.|.-+||.+...+ ....++.++.++.|+. .++++...
T Consensus 48 ~s~~~~~~~~~~~dvIi~~vp~~-~~--~~v~~~l~~~l~~g~ivid~st~~~--~~t~~~~~~~~~~g~~-~vda~vsG 121 (298)
T TIGR00872 48 ANLRELSQRLSAPRVVWVMVPHG-IV--DAVLEELAPTLEKGDIVIDGGNSYY--KDSLRRYKLLKEKGIH-LLDCGTSG 121 (298)
T ss_pred CCHHHHHhhcCCCCEEEEEcCch-HH--HHHHHHHHhhCCCCCEEEECCCCCc--ccHHHHHHHHHhcCCe-EEecCCCC
Confidence 35566666677899999999654 22 2555443 456788999876532 1222344556667765 56777777
Q ss_pred chh
Q 018848 94 GVS 96 (349)
Q Consensus 94 Gls 96 (349)
|..
T Consensus 122 g~~ 124 (298)
T TIGR00872 122 GVW 124 (298)
T ss_pred CHH
Confidence 653
No 499
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=36.63 E-value=1.2e+02 Score=28.20 Aligned_cols=35 Identities=11% Similarity=0.178 Sum_probs=20.5
Q ss_pred cCCcEEEEccCCCCCCCcHHHHHHHHHcCCCeEecC
Q 018848 27 RDVDLVVHAAGPFQQAPKCTVLEAAIETKTAYIDVC 62 (349)
Q Consensus 27 ~~~dvVIn~agP~~~~~~~~v~~aci~~Gv~YvDi~ 62 (349)
+.-++||+|........ ....+.+.+.|+||+|..
T Consensus 84 ~~g~ivid~st~~~~~t-~~~~~~~~~~g~~~vda~ 118 (298)
T TIGR00872 84 EKGDIVIDGGNSYYKDS-LRRYKLLKEKGIHLLDCG 118 (298)
T ss_pred CCCCEEEECCCCCcccH-HHHHHHHHhcCCeEEecC
Confidence 34467777765332222 355666667777777754
No 500
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=36.63 E-value=15 Score=34.37 Aligned_cols=69 Identities=14% Similarity=0.148 Sum_probs=45.3
Q ss_pred CCcEEEEccCCCCCCC--cHHHHHHHHHcCCCeEecCCChhHHHHHHHHHHHHHHcCCcEEecCCcCcchhHHHHHHHHH
Q 018848 28 DVDLVVHAAGPFQQAP--KCTVLEAAIETKTAYIDVCDDTIYSQRAKSFKDRAIAANIPAITTGGIYPGVSNVMAAELVR 105 (349)
Q Consensus 28 ~~dvVIn~agP~~~~~--~~~v~~aci~~Gv~YvDi~~~~~~~~~~~~l~~~a~~~g~~~v~~~G~~PGls~lla~~~~~ 105 (349)
..|+||||+....... +.++-..++..+.-..|+-..+.- ..+-+.|+++|..++.|. +||+..++.
T Consensus 190 ~~dliINaTp~Gm~~~~~~~~~~~~~l~~~~~v~D~vY~P~~----TplL~~A~~~G~~~idGl-------~Mlv~Qaa~ 258 (283)
T COG0169 190 EADLLINATPVGMAGPEGDSPVPAELLPKGAIVYDVVYNPLE----TPLLREARAQGAKTIDGL-------GMLVHQAAE 258 (283)
T ss_pred ccCEEEECCCCCCCCCCCCCCCcHHhcCcCCEEEEeccCCCC----CHHHHHHHHcCCeEECcH-------HHHHHHHHH
Confidence 6899999995433321 113335788888888898765421 145667889998866555 477777775
Q ss_pred HH
Q 018848 106 VA 107 (349)
Q Consensus 106 ~l 107 (349)
.+
T Consensus 259 aF 260 (283)
T COG0169 259 AF 260 (283)
T ss_pred HH
Confidence 43
Done!