BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018849
(349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZX3|A Chain A, Crystal Structure And Domain Rotation Of Ntpdase1 Cd39
pdb|3ZX3|B Chain B, Crystal Structure And Domain Rotation Of Ntpdase1 Cd39
pdb|3ZX3|C Chain C, Crystal Structure And Domain Rotation Of Ntpdase1 Cd39
pdb|3ZX3|D Chain D, Crystal Structure And Domain Rotation Of Ntpdase1 Cd39
Length = 452
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/299 (29%), Positives = 137/299 (45%), Gaps = 46/299 (15%)
Query: 75 PSSVKYGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMRL-------NPGLSSYAVNPTN 127
P +VKYG++LD GS+ T ++++ + E + D G ++ PG+S YA
Sbjct: 30 PENVKYGIVLDAGSSHTNLYIYKWPAEKEN---DTGVVQQLEECQVKGPGISKYAQKTDE 86
Query: 128 AGDSLKDLLDFAKRKVPPAFWADTEIRLMATAGLRLVDVVVQ---DKILDSCRRVLRVSG 184
L + + + ++P + T + L ATAG+RL+ + + D++L + R L+
Sbjct: 87 IAAYLAECMKMSTERIPASKQHQTPVYLGATAGMRLLRMESKQSADEVLAAVSRSLKSYP 146
Query: 185 FRFADDWATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTFVSDEPL- 243
F F A +ITG +EG Y WI NY LG T G ++LGGAS Q+TFV PL
Sbjct: 147 FDFQG--AKIITGQEEGAYGWITINYLLGRFKTPGGSTFGALDLGGASTQITFV---PLN 201
Query: 244 ----PQEFSRTLKFGNVTYNLYSHSFLHFGQNVAFETLRELLSSGDFNTAAESLQ---KG 296
E S + Y +Y+HSFL +G++ A + A+ +Q G
Sbjct: 202 STLEAPETSLQFRLYGTDYTVYTHSFLCYGKDQAL-----------WQKLAQDIQVSSGG 250
Query: 297 TYIDPCSPKGYLHHVESSP--GSLAAK-------IDLSTLQAGGNFSECRSAALTLLQN 346
DPC GY V S G+ K + +Q G++ +C + L + N
Sbjct: 251 ILKDPCFYPGYKKVVNVSELYGTPCTKRFEKKLPFNQFQVQGTGDYEQCHQSILKIFNN 309
>pdb|3ZX0|A Chain A, Ntpdase1 In Complex With Heptamolybdate
pdb|3ZX0|B Chain B, Ntpdase1 In Complex With Heptamolybdate
pdb|3ZX0|C Chain C, Ntpdase1 In Complex With Heptamolybdate
pdb|3ZX0|D Chain D, Ntpdase1 In Complex With Heptamolybdate
pdb|3ZX2|A Chain A, Ntpdase1 In Complex With Decavanadate
pdb|3ZX2|B Chain B, Ntpdase1 In Complex With Decavanadate
pdb|3ZX2|C Chain C, Ntpdase1 In Complex With Decavanadate
pdb|3ZX2|D Chain D, Ntpdase1 In Complex With Decavanadate
Length = 452
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/299 (28%), Positives = 137/299 (45%), Gaps = 46/299 (15%)
Query: 75 PSSVKYGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMRL-------NPGLSSYAVNPTN 127
P +VKYG++LD GS+ T ++++ + E + D G ++ PG+S YA
Sbjct: 30 PENVKYGIVLDAGSSHTNLYIYKWPAEKEN---DTGVVQQLEECQVKGPGISKYAQKTDE 86
Query: 128 AGDSLKDLLDFAKRKVPPAFWADTEIRLMATAGLRLVDVVVQ---DKILDSCRRVLRVSG 184
L + + + ++P + T + L ATAG+RL+ + + D++L + R L+
Sbjct: 87 IAAYLAECMKMSTERIPASKQHQTPVYLGATAGMRLLRMESKQSADEVLAAVSRSLKSYP 146
Query: 185 FRFADDWATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTFVSDEPL- 243
F F A +ITG +EG Y WI NY LG T G ++LGG+S Q+TFV PL
Sbjct: 147 FDFQG--AKIITGQEEGAYGWITINYLLGRFKTPGGSTFGALDLGGSSTQITFV---PLN 201
Query: 244 ----PQEFSRTLKFGNVTYNLYSHSFLHFGQNVAFETLRELLSSGDFNTAAESLQ---KG 296
E S + Y +Y+HSFL +G++ A + A+ +Q G
Sbjct: 202 STLEAPETSLQFRLYGTDYTVYTHSFLCYGKDQAL-----------WQKLAQDIQVSSGG 250
Query: 297 TYIDPCSPKGYLHHVESSP--GSLAAK-------IDLSTLQAGGNFSECRSAALTLLQN 346
DPC GY V S G+ K + +Q G++ +C + L + N
Sbjct: 251 ILKDPCFYPGYKKVVNVSELYGTPCTKRFEKKLPFNQFQVQGTGDYEQCHQSILKIFNN 309
>pdb|3CJ1|A Chain A, Structure Of Rattus Norvegicus Ntpdase2
pdb|3CJ7|A Chain A, Structure Of Rattus Norvegicus Ntpdase2 In Complex With
Amp
pdb|3CJ9|A Chain A, Structure Of Rattus Norvegicus Ntpdase2 In Complex With
Calcium, Amp And Phosphate
pdb|3CJA|A Chain A, Structure Of Rattus Norvegicus Ntpdase2 In Complex With
Calcium And Amppnp
Length = 456
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 88/269 (32%), Positives = 139/269 (51%), Gaps = 36/269 (13%)
Query: 75 PSSVKYGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMR----LNPGLSSYAVNPTNAGD 130
P ++KYG++LD GS+ T + V+ + + + +G G+SSYA +P+ AG
Sbjct: 30 PPALKYGIVLDAGSSHTSMFVYKWPADKENDTGIVGQHSSCDVQGGGISSYANDPSKAGQ 89
Query: 131 SLKDLLDFAKRKVPPAFWADTEIRLMATAGLRLVDVVVQD---KILDSCRRVLRVSGFRF 187
SL L+ A R VP A T + L ATAG+RL+++ + ++L++ + L F F
Sbjct: 90 SLVRCLEQALRDVPRDRHASTPLYLGATAGMRLLNLTSPEATARVLEAVTQTLTQYPFDF 149
Query: 188 ADDWATVITGSDEGVYAWIVANYAL------GTLGG--DPSE-TTGIIELGGASVQVTFV 238
A +++G DEGV+ W+ ANY L G +G P + T G ++LGGAS Q+TF
Sbjct: 150 RG--ARILSGQDEGVFGWVTANYLLENFIKYGWVGRWIRPRKGTLGAMDLGGASTQITFE 207
Query: 239 SDEPLPQEFSRT-LKFGNVTYNLYSHSFLHFGQNVAFETLRELLSSGDFNTAAESLQKGT 297
+ P + L+ Y +Y+HSFL +G++ + L LL+S +LQ
Sbjct: 208 TTSPSEDPGNEVHLRLYGQHYRVYTHSFLCYGRD---QILLRLLAS--------ALQIHR 256
Query: 298 YIDPCSPKGY-----LHHVESSPGSLAAK 321
+ PC PKGY L V SP ++ +
Sbjct: 257 F-HPCWPKGYSTQVLLQEVYQSPCTMGQR 284
>pdb|3AAP|A Chain A, Crystal Structure Of Lp1ntpdase From Legionella
Pneumophila
pdb|3AAQ|A Chain A, Crystal Structure Of Lp1ntpdase From Legionella
Pneumophila In Complex With The Inhibitor Arl 67156
pdb|3AAR|A Chain A, Crystal Structure Of Lp1ntpdase From Legionella
Pneumophila In Complex With Amppnp
Length = 353
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 103/203 (50%), Gaps = 33/203 (16%)
Query: 83 LLDGGSTGTRIHVFSYDTE-TN---HFDFDLGSMRLNPGLSSYAVNPTNAGDSLKDLL-D 137
++D GSTG+R+H++SYDT+ TN H + ++ + ++ PG +S N L LL D
Sbjct: 7 VIDAGSTGSRLHIYSYDTDDTNTPIHIE-EIWNKKIKPGFASIQPNSVTIDAYLTMLLAD 65
Query: 138 FAKRKVPPAFWADTEIRLMATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDW----AT 193
+P F+A TAG+RL+ Q K D FR W A
Sbjct: 66 APIHNIPVYFYA--------TAGMRLLPQSQQKKYYDELEY-----WFRQQSQWQLVEAK 112
Query: 194 VITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTFVSDEPLPQ--EFSR-- 249
ITG+DE ++ W+ NY L TL +++ G++++GGASVQ+ F P+P+ E S+
Sbjct: 113 TITGNDEALFDWLAVNYKLDTLKSVQNKSVGVMDMGGASVQIVF----PMPKNAEISKHN 168
Query: 250 --TLKFGNVTYNLYSHSFLHFGQ 270
L NLY HSFL GQ
Sbjct: 169 QVELNIYGQNINLYVHSFLGLGQ 191
>pdb|4A5B|A Chain A, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 1
(Ntpdase1)
pdb|4A5B|B Chain B, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 1
(Ntpdase1)
Length = 611
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 85/185 (45%), Gaps = 36/185 (19%)
Query: 153 IRLMATAGLRLVDVVVQDKILDSCRRVLR----VSGFRFADD--WATVITGSDEGVYAWI 206
+ L +TAG+R +D + R ++ G++F + W ITG++EG++A+I
Sbjct: 159 VMLCSTAGVRDFHEWYRDALFVLLRHLINNPSPAHGYKFFTNPFWTRPITGAEEGLFAFI 218
Query: 207 VANYALGTLGGDPSET--------------TGIIELGGASVQVTFVSDE--PLPQ----- 245
N+ LG DP+ + G++E+GGAS Q+ F E LP
Sbjct: 219 TLNHLSRRLGEDPARSMIDEYGVKHSRNDLAGVVEVGGASAQIVFPLQEGTVLPSSVRAV 278
Query: 246 --EFSRTLKFGNVTYNLYSHSFLHFGQ-NVAFETLRELLSSGDFNTAAESLQKGTYIDPC 302
+ R L + ++ S SF+ G + A L+EL S+ +F LQ G +PC
Sbjct: 279 NLQRERLLPERYPSADVVSVSFMQLGMASSAGLFLKELCSNDEF------LQGGICSNPC 332
Query: 303 SPKGY 307
KG+
Sbjct: 333 LFKGF 337
>pdb|4A5A|A Chain A, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 3
(Ntpdase3) In Complex With Magnesium And Amppnp
pdb|4A5A|B Chain B, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 3
(Ntpdase3) In Complex With Magnesium And Amppnp
pdb|4A5A|C Chain C, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 3
(Ntpdase3) In Complex With Magnesium And Amppnp
pdb|4A5A|D Chain D, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 3
(Ntpdase3) In Complex With Magnesium And Amppnp
Length = 611
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 85/185 (45%), Gaps = 36/185 (19%)
Query: 153 IRLMATAGLRLVDVVVQDKILDSCRRVLR----VSGFRFADD--WATVITGSDEGVYAWI 206
+ L +TAG+R +D + R ++ G++F + W ITG++EG++A+I
Sbjct: 159 VMLCSTAGVRDFHEWYRDALFVLLRHLINNPSPAHGYKFFTNPFWTRPITGAEEGLFAFI 218
Query: 207 VANYALGTLGGDPSET--------------TGIIELGGASVQVTFVSDE--PLPQ----- 245
N+ LG DP+ + G++E+GGAS Q+ F E LP
Sbjct: 219 TLNHLSRRLGEDPARSMIDEYGVKQSRNDLAGVVEVGGASAQIVFPLQEGTVLPSSVRAV 278
Query: 246 --EFSRTLKFGNVTYNLYSHSFLHFGQ-NVAFETLRELLSSGDFNTAAESLQKGTYIDPC 302
+ R L + ++ S SF+ G + A L+EL S+ +F LQ G +PC
Sbjct: 279 NLQRERLLPERYPSADVVSVSFMQLGMASSAGLFLKELCSNDEF------LQGGICSNPC 332
Query: 303 SPKGY 307
KG+
Sbjct: 333 LFKGF 337
>pdb|4A57|A Chain A, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A57|B Chain B, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A57|C Chain C, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A57|D Chain D, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A59|A Chain A, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
pdb|4A59|B Chain B, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
pdb|4A59|C Chain C, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
pdb|4A59|D Chain D, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
Length = 611
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 85/185 (45%), Gaps = 36/185 (19%)
Query: 153 IRLMATAGLRLVDVVVQDKILDSCRRVLR----VSGFRFADD--WATVITGSDEGVYAWI 206
+ L +TAG+R +D + R ++ G++F + W ITG++EG++A+I
Sbjct: 159 VMLCSTAGVRDFHEWYRDALFVLLRHLINNPSPAHGYKFFTNPFWTRPITGAEEGLFAFI 218
Query: 207 VANYALGTLGGDPS--------------ETTGIIELGGASVQVTFVSDE--PLPQ----- 245
N+ LG DP+ + G++E+GGAS Q+ F E LP
Sbjct: 219 TLNHLSRRLGEDPARCMIDEYGVKQCRNDLAGVVEVGGASAQIVFPLQEGTVLPSSVRAV 278
Query: 246 --EFSRTLKFGNVTYNLYSHSFLHFGQ-NVAFETLRELLSSGDFNTAAESLQKGTYIDPC 302
+ R L + ++ S SF+ G + A L+EL S+ +F LQ G +PC
Sbjct: 279 NLQRERLLPERYPSADVVSVSFMQLGMASSAGLFLKELCSNDEF------LQGGICSNPC 332
Query: 303 SPKGY 307
KG+
Sbjct: 333 LFKGF 337
>pdb|3AGR|A Chain A, Crystal Structure Of Nucleoside Triphosphate Hydrolases
From Neospora Caninum
pdb|3AGR|B Chain B, Crystal Structure Of Nucleoside Triphosphate Hydrolases
From Neospora Caninum
Length = 602
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 71/152 (46%), Gaps = 36/152 (23%)
Query: 184 GFRF--ADDWATVITGSDEGVYAWIVANYALGTLGGDPS--------------ETTGIIE 227
G++F +W ITG++EG+YA++ N+ G LG DP+ + G++E
Sbjct: 194 GYKFFTNPEWTRPITGAEEGLYAFLALNHLSGRLGEDPARCYVDEYGMKQCRNDLVGVVE 253
Query: 228 LGGASVQVTFVSDE--PLPQ-------EFSRTLKFGNVTYNLYSHSFLHFGQNVAFET-- 276
+GGAS Q+ F + LP + R L + ++ S SF+ G VA +
Sbjct: 254 VGGASTQIVFPLQDGTALPSSIRAVNLQHERFLPSRFPSADVISVSFMQLG--VASSSGL 311
Query: 277 -LRELLSSGDFNTAAESLQKGTYIDPCSPKGY 307
+EL S+ +F +G +PC +G+
Sbjct: 312 FFKELCSNAEFR------HQGICYNPCIFRGF 337
>pdb|1ZC6|A Chain A, Crystal Structure Of Putative N-Acetylglucosamine Kinase
From Chromobacterium Violaceum. Northeast Structural
Genomics Target Cvr23.
pdb|1ZC6|B Chain B, Crystal Structure Of Putative N-Acetylglucosamine Kinase
From Chromobacterium Violaceum. Northeast Structural
Genomics Target Cvr23
Length = 305
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 77 SVKYGVLLDGGSTGTRIHVFSYD 99
S++Y + +DGG TGTRI + + D
Sbjct: 9 SIRYLIGVDGGGTGTRIRLHASD 31
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,773,595
Number of Sequences: 62578
Number of extensions: 451228
Number of successful extensions: 1186
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1155
Number of HSP's gapped (non-prelim): 19
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)