Query 018849
Match_columns 349
No_of_seqs 229 out of 994
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 04:33:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018849.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018849hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1386 Nucleoside phosphatase 100.0 3.1E-71 6.8E-76 548.3 24.2 273 74-346 4-301 (501)
2 PF01150 GDA1_CD39: GDA1/CD39 100.0 7.5E-65 1.6E-69 511.4 8.1 262 76-346 5-288 (434)
3 KOG1385 Nucleoside phosphatase 100.0 1E-59 2.2E-64 457.5 21.5 257 74-346 62-331 (453)
4 COG5371 Golgi nucleoside dipho 100.0 4.9E-29 1.1E-33 245.4 12.6 267 78-348 119-405 (549)
5 COG5371 Golgi nucleoside dipho 99.9 4.8E-28 1E-32 238.5 -1.8 255 78-348 3-286 (549)
6 TIGR03706 exo_poly_only exopol 99.8 1.2E-19 2.5E-24 175.2 15.0 154 82-256 3-158 (300)
7 COG0248 GppA Exopolyphosphatas 99.8 4.7E-19 1E-23 180.8 15.6 156 81-256 5-162 (492)
8 PRK11031 guanosine pentaphosph 99.8 1.1E-18 2.4E-23 179.2 15.6 159 78-256 5-165 (496)
9 PRK10854 exopolyphosphatase; P 99.8 1.9E-18 4.1E-23 178.2 15.6 158 80-257 12-171 (513)
10 PF02541 Ppx-GppA: Ppx/GppA ph 99.5 5.1E-14 1.1E-18 134.7 12.1 128 95-240 2-131 (285)
11 PRK15080 ethanolamine utilizat 97.9 4.6E-05 1E-09 72.7 8.5 131 76-240 21-154 (267)
12 PRK09472 ftsA cell division pr 95.5 0.18 3.9E-06 51.1 12.3 62 79-142 8-71 (420)
13 TIGR02529 EutJ ethanolamine ut 95.4 0.056 1.2E-06 50.7 7.8 139 84-257 2-142 (239)
14 CHL00094 dnaK heat shock prote 94.8 1.3 2.9E-05 47.3 16.8 18 80-97 3-20 (621)
15 PRK05183 hscA chaperone protei 94.6 1.8 4E-05 46.2 17.2 39 192-238 180-218 (616)
16 TIGR01174 ftsA cell division p 94.6 0.87 1.9E-05 45.2 13.9 62 81-144 2-65 (371)
17 PRK13410 molecular chaperone D 94.3 2.1 4.5E-05 46.3 17.0 40 192-239 166-205 (668)
18 PRK13411 molecular chaperone D 94.2 2.3 5E-05 45.8 17.0 18 80-97 3-20 (653)
19 PRK10719 eutA reactivating fac 93.9 1 2.2E-05 46.6 12.8 159 79-258 6-181 (475)
20 cd00012 ACTIN Actin; An ubiqui 93.8 0.7 1.5E-05 45.6 11.4 36 221-256 143-178 (371)
21 TIGR02350 prok_dnaK chaperone 93.7 2.6 5.7E-05 44.6 16.2 20 220-239 182-201 (595)
22 smart00268 ACTIN Actin. ACTIN 93.7 0.53 1.1E-05 46.5 10.3 36 221-256 143-178 (373)
23 TIGR01991 HscA Fe-S protein as 93.7 2.7 5.8E-05 44.8 16.2 19 221-239 181-199 (599)
24 COG0849 ftsA Cell division ATP 93.7 0.21 4.5E-06 50.9 7.4 62 80-145 7-72 (418)
25 PRK00290 dnaK molecular chaper 93.5 3.3 7.2E-05 44.2 16.6 20 220-239 184-203 (627)
26 PRK13929 rod-share determining 93.4 7.9 0.00017 37.9 18.0 96 124-239 73-168 (335)
27 KOG2517 Ribulose kinase and re 93.1 0.38 8.3E-06 50.1 8.4 86 78-163 5-90 (516)
28 PF06277 EutA: Ethanolamine ut 92.9 1.9 4E-05 44.6 12.9 155 80-256 4-176 (473)
29 PLN03184 chloroplast Hsp70; Pr 92.9 5.5 0.00012 43.1 17.2 18 221-238 224-241 (673)
30 PRK01433 hscA chaperone protei 92.5 7.9 0.00017 41.3 17.6 41 191-239 171-211 (595)
31 PF00370 FGGY_N: FGGY family o 92.5 0.39 8.5E-06 44.5 6.9 62 80-143 1-63 (245)
32 PTZ00400 DnaK-type molecular c 92.4 3.8 8.2E-05 44.2 15.2 40 191-238 204-243 (663)
33 PF00022 Actin: Actin; InterP 91.8 2.4 5.3E-05 41.9 12.1 103 130-255 74-176 (393)
34 PF06723 MreB_Mbl: MreB/Mbl pr 90.3 3.3 7.2E-05 40.9 11.2 94 124-239 70-163 (326)
35 PF11104 PilM_2: Type IV pilus 89.9 2.4 5.2E-05 41.6 10.0 64 170-240 135-199 (340)
36 TIGR00241 CoA_E_activ CoA-subs 89.6 2.6 5.6E-05 39.5 9.5 109 80-239 1-109 (248)
37 PRK13930 rod shape-determining 89.1 8.4 0.00018 37.3 13.0 19 222-240 153-171 (335)
38 PTZ00186 heat shock 70 kDa pre 88.3 22 0.00047 38.5 16.5 19 79-97 27-45 (657)
39 PTZ00281 actin; Provisional 87.4 7.3 0.00016 38.8 11.6 35 222-256 150-184 (376)
40 PTZ00004 actin-2; Provisional 87.3 8.4 0.00018 38.4 12.0 36 222-257 150-185 (378)
41 TIGR01175 pilM type IV pilus a 87.3 19 0.00041 35.1 14.2 32 223-256 190-221 (348)
42 PRK13927 rod shape-determining 87.3 7 0.00015 37.9 11.2 18 222-239 149-166 (334)
43 COG4972 PilM Tfp pilus assembl 86.9 6.1 0.00013 39.2 10.2 48 192-241 165-213 (354)
44 PTZ00452 actin; Provisional 86.8 8.3 0.00018 38.6 11.6 105 130-258 80-185 (375)
45 PTZ00466 actin-like protein; P 86.3 7.7 0.00017 38.9 11.1 104 130-257 87-190 (380)
46 PF00012 HSP70: Hsp70 protein; 84.4 8.3 0.00018 40.4 10.7 119 129-281 117-236 (602)
47 COG1070 XylB Sugar (pentulose 79.0 6.9 0.00015 40.6 7.7 63 77-142 2-67 (502)
48 COG2971 Predicted N-acetylgluc 77.3 5.9 0.00013 38.7 6.1 56 77-140 3-59 (301)
49 PTZ00280 Actin-related protein 76.7 35 0.00075 34.4 11.8 36 222-257 161-196 (414)
50 PRK10939 autoinducer-2 (AI-2) 76.4 8.1 0.00018 40.2 7.4 22 78-99 2-23 (520)
51 PF13941 MutL: MutL protein 75.7 8.3 0.00018 39.9 7.0 74 82-163 3-79 (457)
52 PRK04123 ribulokinase; Provisi 75.3 9.8 0.00021 39.8 7.7 20 79-98 3-22 (548)
53 TIGR01234 L-ribulokinase L-rib 73.5 11 0.00024 39.4 7.5 19 80-98 2-20 (536)
54 PTZ00009 heat shock 70 kDa pro 72.7 59 0.0013 35.0 13.0 90 130-239 123-212 (653)
55 PF01708 Gemini_mov: Geminivir 71.5 7.8 0.00017 31.1 4.4 28 36-66 31-58 (91)
56 COG0443 DnaK Molecular chapero 70.5 1.5E+02 0.0033 31.5 16.0 89 129-239 102-190 (579)
57 TIGR03192 benz_CoA_bzdQ benzoy 69.9 35 0.00075 33.3 9.5 110 79-238 32-142 (293)
58 PRK10331 L-fuculokinase; Provi 69.7 15 0.00033 37.6 7.4 58 80-141 3-65 (470)
59 PLN02295 glycerol kinase 68.9 15 0.00032 38.2 7.2 59 80-142 1-62 (512)
60 PTZ00294 glycerol kinase-like 67.8 18 0.00039 37.4 7.6 59 79-141 2-63 (504)
61 TIGR02628 fuculo_kin_coli L-fu 67.7 15 0.00033 37.6 6.9 58 80-141 2-64 (465)
62 PF01869 BcrAD_BadFG: BadF/Bad 67.6 7.5 0.00016 36.6 4.3 72 83-163 2-74 (271)
63 COG1924 Activator of 2-hydroxy 65.1 37 0.0008 34.4 8.7 117 75-239 131-247 (396)
64 smart00842 FtsA Cell division 63.6 20 0.00043 31.9 6.1 60 82-144 2-64 (187)
65 PRK11678 putative chaperone; P 63.4 1.3E+02 0.0028 31.1 12.6 125 129-278 131-260 (450)
66 PF14450 FtsA: Cell division p 60.5 9.3 0.0002 31.7 3.1 61 81-142 1-62 (120)
67 TIGR01314 gntK_FGGY gluconate 58.5 28 0.00061 36.0 7.0 19 80-98 1-19 (505)
68 PRK15027 xylulokinase; Provisi 58.1 30 0.00065 35.6 7.0 58 81-142 2-62 (484)
69 COG0554 GlpK Glycerol kinase [ 58.1 21 0.00045 37.2 5.6 61 78-141 4-66 (499)
70 PF14574 DUF4445: Domain of un 58.0 14 0.0003 37.8 4.4 23 79-101 1-23 (412)
71 TIGR01311 glycerol_kin glycero 57.7 27 0.00059 36.0 6.7 58 80-141 2-62 (493)
72 PRK13917 plasmid segregation p 55.3 1E+02 0.0022 30.4 10.0 46 221-281 185-230 (344)
73 COG1077 MreB Actin-like ATPase 55.3 1E+02 0.0022 30.7 9.6 92 130-240 79-172 (342)
74 PF08841 DDR: Diol dehydratase 53.4 27 0.0006 34.1 5.3 91 170-280 98-191 (332)
75 TIGR00904 mreB cell shape dete 53.4 83 0.0018 30.5 9.0 18 222-239 151-168 (333)
76 COG4819 EutA Ethanolamine util 52.7 1.6E+02 0.0035 29.7 10.5 141 80-242 6-166 (473)
77 TIGR01315 5C_CHO_kinase FGGY-f 50.1 43 0.00093 35.1 6.7 57 81-141 2-61 (541)
78 PLN03160 uncharacterized prote 49.5 15 0.00033 34.1 2.9 30 36-65 32-61 (219)
79 COG1069 AraB Ribulose kinase [ 49.4 76 0.0017 33.5 8.2 79 78-159 2-83 (544)
80 TIGR02627 rhamnulo_kin rhamnul 49.4 33 0.00071 35.0 5.6 59 82-141 1-63 (454)
81 TIGR02261 benz_CoA_red_D benzo 48.5 1E+02 0.0023 29.5 8.5 112 80-238 2-114 (262)
82 COG4820 EutJ Ethanolamine util 45.8 48 0.001 31.1 5.4 61 79-143 29-89 (277)
83 COG3894 Uncharacterized metal- 44.8 23 0.0005 37.1 3.6 26 76-101 161-186 (614)
84 PRK00047 glpK glycerol kinase; 43.4 51 0.0011 34.0 6.0 21 79-99 5-25 (498)
85 PRK13928 rod shape-determining 42.8 1.3E+02 0.0027 29.3 8.4 19 222-240 148-166 (336)
86 PRK03011 butyrate kinase; Prov 40.4 37 0.0008 34.0 4.2 58 80-141 3-60 (358)
87 PTZ00288 glucokinase 1; Provis 39.8 1.3E+02 0.0027 30.8 8.0 64 76-144 23-86 (405)
88 PRK15136 multidrug efflux syst 39.5 69 0.0015 32.1 6.1 10 303-312 335-344 (390)
89 TIGR03123 one_C_unchar_1 proba 39.2 1.3E+02 0.0029 29.7 7.8 84 151-240 53-147 (318)
90 KOG0100 Molecular chaperones G 37.6 98 0.0021 31.9 6.6 41 192-239 203-243 (663)
91 PRK09213 pur operon repressor; 37.6 57 0.0012 31.4 4.9 66 118-183 26-94 (271)
92 PHA02692 hypothetical protein; 32.8 68 0.0015 24.6 3.6 6 36-41 38-43 (70)
93 PF08777 RRM_3: RNA binding mo 28.6 44 0.00095 27.4 2.2 42 161-203 42-85 (105)
94 PHA03164 hypothetical protein; 27.8 41 0.0009 26.3 1.7 14 48-61 60-73 (88)
95 TIGR02259 benz_CoA_red_A benzo 26.4 54 0.0012 33.6 2.8 22 78-99 1-22 (432)
96 TIGR00555 panK_eukar pantothen 26.1 5.6E+02 0.012 24.8 9.6 41 198-239 78-118 (279)
97 TIGR01743 purR_Bsub pur operon 24.7 1.2E+02 0.0026 29.2 4.7 67 118-184 24-93 (268)
98 PF12273 RCR: Chitin synthesis 24.6 70 0.0015 27.0 2.8 13 44-56 4-16 (130)
99 KOG0104 Molecular chaperones G 24.4 1.9E+02 0.0042 32.0 6.5 72 204-282 196-274 (902)
100 PF10726 DUF2518: Protein of f 24.0 1E+02 0.0023 27.0 3.7 18 72-89 64-81 (145)
101 TIGR02707 butyr_kinase butyrat 23.6 1E+02 0.0022 30.8 4.1 20 81-100 2-21 (351)
102 PF07423 DUF1510: Protein of u 22.4 40 0.00087 31.5 0.9 31 34-64 6-36 (217)
103 PF06406 StbA: StbA protein; 21.6 3.5E+02 0.0076 26.2 7.4 71 191-283 142-212 (318)
104 TIGR01312 XylB D-xylulose kina 21.4 2.2E+02 0.0047 28.9 6.1 56 82-141 1-59 (481)
105 PF09874 DUF2101: Predicted me 21.2 1.8E+02 0.004 26.9 4.9 20 76-95 142-161 (206)
106 COG4499 Predicted membrane pro 21.1 78 0.0017 32.2 2.7 34 32-65 212-245 (434)
107 PF07234 DUF1426: Protein of u 21.1 1.1E+02 0.0024 25.2 3.0 21 45-65 14-34 (117)
108 PRK13865 type IV secretion sys 20.8 1E+02 0.0022 29.0 3.3 15 225-239 165-179 (229)
No 1
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.1e-71 Score=548.28 Aligned_cols=273 Identities=42% Similarity=0.711 Sum_probs=236.2
Q ss_pred CCCCceEEEEEEcCCCceEEEEEEeeC--CCCcccc---ccceeecCCCCcccCCCcchHHHHHHHHHHHHHHhCCCCCc
Q 018849 74 PPSSVKYGVLLDGGSTGTRIHVFSYDT--ETNHFDF---DLGSMRLNPGLSSYAVNPTNAGDSLKDLLDFAKRKVPPAFW 148 (349)
Q Consensus 74 ~~~~~~y~vVIDaGSsgtRl~Vy~~~~--~~~~~~~---~~~~~k~~pGLss~~~~~~~a~~~l~~Ll~~a~~~ip~~~~ 148 (349)
.+...+|+|||||||+|||||||.|+. +.|.+++ .....|++||||+|+++|++|..+|.+|+++|+++||+++|
T Consensus 4 ~~~~~kYgiviDaGSSgTrl~Vy~w~~~~g~~~~~i~~~~~~~~k~~PGiSsfa~nP~~a~~~l~pLlefA~~~IPk~~h 83 (501)
T KOG1386|consen 4 EPPNLKYGIVIDAGSSGTRLFVYKWPAESGNPLTGIVGQIYDCLKLGPGISSFADNPEGASVYLTPLLEFAKEHIPKEKH 83 (501)
T ss_pred CCCcceEEEEEecCCCCceEEEEeecccCCCcccCccchhhcccccCCChhhhccChhhhHHHHHHHHHHHHhhCCHhhc
Confidence 345789999999999999999999987 3443332 23457899999999999999999999999999999999999
Q ss_pred CCceEEEEeehhhcccChhcHHHHHHHHHHHhh-ccCccccCCceEEcCCccchhhHHHHHHHhhccCCC----C-CCCc
Q 018849 149 ADTEIRLMATAGLRLVDVVVQDKILDSCRRVLR-VSGFRFADDWATVITGSDEGVYAWIVANYALGTLGG----D-PSET 222 (349)
Q Consensus 149 ~~tpv~l~ATAGmR~L~~~~~~~il~~vr~~l~-~~~f~f~~~~v~VIsG~eEg~y~WvavNy~lg~l~~----~-~~~t 222 (349)
+.|||+++||||||+||..+|++||+.++++++ .++|.|.++||+||||+|||+|+|+++||++|+|.. + +..|
T Consensus 84 ~~Tpl~l~ATAGMRLL~~~~qeaIl~~l~~~l~~~s~f~f~~~~a~IIsG~~EGvYgWi~~NY~LG~f~~~~~~~~~~~T 163 (501)
T KOG1386|consen 84 KETPLFLGATAGMRLLPLAQQEAILEVLRRVLKSLSDFLFDDEWARIISGKEEGVYGWIAANYLLGRFGKKNRWDSRKET 163 (501)
T ss_pred CCCCeEEEecccceecCcccHHHHHHHHHHhcccccCCcccccccEEeecccceehhhHHHHHHHHhccccCcccCCcce
Confidence 999999999999999999999999999999998 689999999999999999999999999999999986 3 5689
Q ss_pred eeeEeeCCceeEEEeccC---CCCCccceeeeEec---ceeEEEEEeecccccHHHHHHHHHHHhccCCcchh--hhhcC
Q 018849 223 TGIIELGGASVQVTFVSD---EPLPQEFSRTLKFG---NVTYNLYSHSFLHFGQNVAFETLRELLSSGDFNTA--AESLQ 294 (349)
Q Consensus 223 ~gvlDlGGaStQI~f~~~---~~~~~~~~~~~~l~---~~~~~lys~S~Lg~G~~~ar~~~~~~l~~~~~~~~--~~~~~ 294 (349)
+|+||||||||||||++. +..++++..++.++ ...|+||+|||||||.|+|+++++.+|.+...+.. +....
T Consensus 164 ~G~lDlGGAS~QItFe~~~~~e~~~~~~~~~i~~G~~~~~~Y~ly~~SfLgyG~N~A~~ry~~~Ll~~~~n~n~~~~~~~ 243 (501)
T KOG1386|consen 164 FGALDLGGASTQITFEPPNQQEEVPKENLQTINYGNDNLVKYRLYVHSFLGYGANEALDRYLAMLLEKLPNKNGLTGLTG 243 (501)
T ss_pred eeeEecCCceeEEEEecCccccccchhhhhheecCCCCceEEEEEEEeecccchhHHHHHHHHHHHHhcccccccccccc
Confidence 999999999999999988 56777888899888 26799999999999999999999999887544422 23445
Q ss_pred CCCcCCCCCCCCceeeeec-----CCCcccccc-ceeeeecCCCHHhHHHHHHHHHhc
Q 018849 295 KGTYIDPCSPKGYLHHVES-----SPGSLAAKI-DLSTLQAGGNFSECRSAALTLLQN 346 (349)
Q Consensus 295 ~~~~~~PC~p~Gy~~~~~~-----~~~~~~~~~-~~~~~~GtGnf~~C~~~v~~lL~~ 346 (349)
+..+.|||+|+||..+++. ++|.-..++ +.+.+.|||||++|+++|.++|++
T Consensus 244 ~~~~~DPC~p~Gy~~~~~~~~~~~~~~~e~~~~~~~~~~~GtGn~~~C~~~v~~ll~~ 301 (501)
T KOG1386|consen 244 DNPLTDPCLPRGYNYDVNLSDVYSSPCPEESKNGQSIELQGTGNWSQCRSAVLPLLNF 301 (501)
T ss_pred CcccCCCCCCCCcceeeeeccccccccccccCCCceEEEecCCCHHHHHHHHHHhcCC
Confidence 5678999999999999883 233111122 237889999999999999999985
No 2
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=100.00 E-value=7.5e-65 Score=511.41 Aligned_cols=262 Identities=41% Similarity=0.703 Sum_probs=216.0
Q ss_pred CCceEEEEEEcCCCceEEEEEEeeCC-C---Cccc-c---ccceeecCCCCcccCCCcchHHHHHHHHHHHHHHhCCCCC
Q 018849 76 SSVKYGVLLDGGSTGTRIHVFSYDTE-T---NHFD-F---DLGSMRLNPGLSSYAVNPTNAGDSLKDLLDFAKRKVPPAF 147 (349)
Q Consensus 76 ~~~~y~vVIDaGSsgtRl~Vy~~~~~-~---~~~~-~---~~~~~k~~pGLss~~~~~~~a~~~l~~Ll~~a~~~ip~~~ 147 (349)
.+.+|+|||||||||||+|||+|... . +.+. . .....+++||||+|+++|+++.++|.+|+++|+++||.++
T Consensus 5 ~~~~y~vviDAGSsgsR~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~pgls~~~~~~~~~~~~l~~ll~~a~~~ip~~~ 84 (434)
T PF01150_consen 5 ESRKYGVVIDAGSSGSRVHVYKWRCRDNNSLPVVPLVEQSKPVFKKVEPGLSSFADNPEKAAESLQPLLDFAKSVIPKSQ 84 (434)
T ss_dssp EEEEEEEEEEEESSEEEEEEEEEEEEECCGCEEEEEEEEBEEHCCHHCCHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccEEEEEEcCCCCceEEEEEEecCCCccCCccccceeccchhhcccchHHHhCCChHHHHHHHHHHHHHHHhhCCHHH
Confidence 45789999999999999999999762 1 1111 1 1235788999999999999999999999999999999999
Q ss_pred cCCceEEEEeehhhcccChhcHHHHHHHHHHHhh-ccCccccCCceEEcCCccchhhHHHHHHHhhccCCCC-----CCC
Q 018849 148 WADTEIRLMATAGLRLVDVVVQDKILDSCRRVLR-VSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGD-----PSE 221 (349)
Q Consensus 148 ~~~tpv~l~ATAGmR~L~~~~~~~il~~vr~~l~-~~~f~f~~~~v~VIsG~eEg~y~WvavNy~lg~l~~~-----~~~ 221 (349)
|..|||+|+||||||+|+.+++++||+.|++.++ .++|.|.++||+||||+|||+|+|++|||++|+|..+ ...
T Consensus 85 ~~~tpi~l~ATAGmRlL~~~~~~~il~~~~~~l~~~~~f~~~~~~v~visG~eEg~y~WvtvNyl~g~l~~~~~~~~~~~ 164 (434)
T PF01150_consen 85 HSSTPIYLGATAGMRLLPEEQQEAILDEVRNYLRSSSPFPFRDSWVRVISGEEEGIYGWVTVNYLLGRLDSSGASKSPSN 164 (434)
T ss_dssp SCHEEEEEEE-HHHHTHHHHHHHHHHHHHHHCHHCHCTSSEEETTCEE--HHHHHHHHHHHHHHHTTTSSSSTEEEEESS
T ss_pred hCCeeEEEecccccEECChhhHHHHHHHHHHhhccCCCCccCccceEecCHHHhhHhHHHHHHHHhCccccccccCCCCc
Confidence 9999999999999999999999999999999997 4899999999999999999999999999999999876 468
Q ss_pred ceeeEeeCCceeEEEeccCCC------CCc--cceeeeEecceeEEEEEeecccccHHHHHHHHHHHhccCCcchhhhhc
Q 018849 222 TTGIIELGGASVQVTFVSDEP------LPQ--EFSRTLKFGNVTYNLYSHSFLHFGQNVAFETLRELLSSGDFNTAAESL 293 (349)
Q Consensus 222 t~gvlDlGGaStQI~f~~~~~------~~~--~~~~~~~l~~~~~~lys~S~Lg~G~~~ar~~~~~~l~~~~~~~~~~~~ 293 (349)
|+|+||||||||||+|.+++. ... .+.+.+++++++|+||+|||||||+++||+++++.+++... ..
T Consensus 165 t~g~lDlGGaStQIaf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vys~SyLgyG~~~Ar~~~l~~l~~~~~-----~~ 239 (434)
T PF01150_consen 165 TVGALDLGGASTQIAFEPSEGTFSNSSLEDINSYIRRLKLGGKNYDVYSHSYLGYGLNEARKRYLASLVSNSS-----KK 239 (434)
T ss_dssp -EEEEEE-SSEEEEEEEETTTTTSCTTSSGCE-GCCCCCCTTCCCEEEEEEEETCSHHHHHHHHHHHHTTSTT-----TE
T ss_pred eEEEEecCCcceeeeeccCcccccccccccccchheeeccccceeEEEEeecccccHHHHHHHHHHHHhhhcc-----cc
Confidence 999999999999999998821 111 24678899999999999999999999999999999987421 11
Q ss_pred CCCCcCCCCCCCCceeeeecCCCccccccceeeeecCCCHHhHHHHHHHHHhc
Q 018849 294 QKGTYIDPCSPKGYLHHVESSPGSLAAKIDLSTLQAGGNFSECRSAALTLLQN 346 (349)
Q Consensus 294 ~~~~~~~PC~p~Gy~~~~~~~~~~~~~~~~~~~~~GtGnf~~C~~~v~~lL~~ 346 (349)
....+.|||+|+||...++... .....+.+.|+|||++|++.++++|++
T Consensus 240 ~~~~i~~PC~p~G~~~~~~~~~----~~~~~~~~~Gtg~~~~C~~~i~~~l~~ 288 (434)
T PF01150_consen 240 SSGVIPNPCLPKGYNQSWTYSD----VEYDVITLTGTGDFEKCRELIRKLLNK 288 (434)
T ss_dssp ETCEEEETTS-BT-EEESCSCH----EESSCCEBTTHHHHHHCCTTSHHHHT-
T ss_pred cccccCCccccCCccceEEecc----cccccccCCCCCchHHHHHHHHHHhhc
Confidence 3457899999999998876211 011236789999999999999999985
No 3
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1e-59 Score=457.54 Aligned_cols=257 Identities=37% Similarity=0.626 Sum_probs=222.5
Q ss_pred CCCCceEEEEEEcCCCceEEEEEEeeCCC----CccccccceeecCCCCcccCCCcchHHHHHHHHHHHHHHhCCCCCcC
Q 018849 74 PPSSVKYGVLLDGGSTGTRIHVFSYDTET----NHFDFDLGSMRLNPGLSSYAVNPTNAGDSLKDLLDFAKRKVPPAFWA 149 (349)
Q Consensus 74 ~~~~~~y~vVIDaGSsgtRl~Vy~~~~~~----~~~~~~~~~~k~~pGLss~~~~~~~a~~~l~~Ll~~a~~~ip~~~~~ 149 (349)
...+++|+|||||||||||||||+|+... |.++ .+.+..++||||+|++||++++++|++|++.|+..||.+.|+
T Consensus 62 s~~~~~Y~iiiDAGSTGsRvHvY~F~~~~~~~~p~le-~E~F~~~kPGLSsfaddp~~aA~Sl~~LLd~A~~~vP~~~~~ 140 (453)
T KOG1385|consen 62 SSIKRQYAIIIDAGSTGTRVHVYKFDQCLPGMPPELE-HELFKEVKPGLSSFADDPEEAANSLRPLLDVAEAFVPREHWK 140 (453)
T ss_pred CCCceEEEEEEecCCCcceEEEEEeccCCCCCCchhH-HHHHhhcCCcccccCCChHHHHHhHHHHHHHHHhhCCHhHhc
Confidence 44568999999999999999999998742 2333 345677899999999999999999999999999999999999
Q ss_pred CceEEEEeehhhcccChhcHHHHHHHHHHHhh-ccCccccCCceEEcCCccchhhHHHHHHHhhccCCCCCCCceeeEee
Q 018849 150 DTEIRLMATAGLRLVDVVVQDKILDSCRRVLR-VSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIEL 228 (349)
Q Consensus 150 ~tpv~l~ATAGmR~L~~~~~~~il~~vr~~l~-~~~f~f~~~~v~VIsG~eEg~y~WvavNy~lg~l~~~~~~t~gvlDl 228 (349)
+|||.+.||||+|+||...++.||++||+.|+ +++|...++.|.||+|.|||+|+|+++||++|+|+.+.+.|+|++||
T Consensus 141 kTPi~lkATAGLRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsIm~GtdEGv~aWiTiN~Llg~L~~~~~~tvgv~DL 220 (453)
T KOG1385|consen 141 KTPIVLKATAGLRLLPGSKADNILQAVRELLKNDSPFPVVEDAVSIMDGTDEGVYAWITINYLLGTLGAPGHRTVGVVDL 220 (453)
T ss_pred cCceEEEeecccccCChhHHHHHHHHHHHHHhccCCccccCCceeeccCcccceeeeeehhhhhcccCCCCCCceEEEEc
Confidence 99999999999999999999999999999998 78999888889999999999999999999999999876789999999
Q ss_pred CCceeEEEeccCCC----CCccceeeeEecceeEEEEEeecccccHHHHHHHHHHHhccCCcchhhhhcCCCCcCCCCCC
Q 018849 229 GGASVQVTFVSDEP----LPQEFSRTLKFGNVTYNLYSHSFLHFGQNVAFETLRELLSSGDFNTAAESLQKGTYIDPCSP 304 (349)
Q Consensus 229 GGaStQI~f~~~~~----~~~~~~~~~~l~~~~~~lys~S~Lg~G~~~ar~~~~~~l~~~~~~~~~~~~~~~~~~~PC~p 304 (349)
|||||||+|.+... .++.+.+.+.++|.+|+||+|||||||+.+||..+++ ...+ .....++.+||+|
T Consensus 221 GGGSTQi~f~p~~e~~~~~~~~y~~~l~~~~~ky~LythSyLg~GL~aAR~~il~-~~e~-------~~~~h~l~spCl~ 292 (453)
T KOG1385|consen 221 GGGSTQITFLPTFEDTLEAPVPYKRELDFFGRKYKLYTHSYLGLGLKAARLAILK-VLEN-------EETTHQLISPCLP 292 (453)
T ss_pred CCceEEEEEecCcccccccCCcceeeeeecCceEEEEEecccchHHHHHHHhhhh-hhcc-------ccccceeeccccC
Confidence 99999999998642 3344888999999999999999999999999999998 3332 1124468899999
Q ss_pred CCceeeeecCCCccccccceeeee----cCCCHHhHHHHHHHHHhc
Q 018849 305 KGYLHHVESSPGSLAAKIDLSTLQ----AGGNFSECRSAALTLLQN 346 (349)
Q Consensus 305 ~Gy~~~~~~~~~~~~~~~~~~~~~----GtGnf~~C~~~v~~lL~~ 346 (349)
.||...|.+. .+.+.+. |...+++|+..+..+|++
T Consensus 293 ~~~~~~~~~~-------~~~y~v~~~~s~~~~~E~c~~~~~~~l~~ 331 (453)
T KOG1385|consen 293 PGYAGEWEYG-------GVTYKVSGSQSGASLFEQCRGTIDAVLEG 331 (453)
T ss_pred cchhhheeec-------ceEEEecCccCccccchhhHHHHHHHHhc
Confidence 9999987632 1223343 456799999999999986
No 4
>COG5371 Golgi nucleoside diphosphatase [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.9e-29 Score=245.38 Aligned_cols=267 Identities=25% Similarity=0.282 Sum_probs=209.9
Q ss_pred ceEEEEEEcCCCceEEEEEEeeCCCC--ccccccceeecCCCCcccCCCcchHHHHHHHHHHHHHHhCCCCCcCCceEEE
Q 018849 78 VKYGVLLDGGSTGTRIHVFSYDTETN--HFDFDLGSMRLNPGLSSYAVNPTNAGDSLKDLLDFAKRKVPPAFWADTEIRL 155 (349)
Q Consensus 78 ~~y~vVIDaGSsgtRl~Vy~~~~~~~--~~~~~~~~~k~~pGLss~~~~~~~a~~~l~~Ll~~a~~~ip~~~~~~tpv~l 155 (349)
.+|..+|||||+|+|++||++..+.+ ... .+....+.|||++|..++.++..++.++++.|.+.+|.+..+++|+.+
T Consensus 119 ~qYv~~idagstgsr~~iyqfidge~~~~~~-~~~~n~L~~~l~d~d~~t~G~~~s~~~l~qiA~~~~p~e~~r~~pi~~ 197 (549)
T COG5371 119 CQYVKMIDAGSTGSRSNIYQFIDGEIEGQYL-WLNTNYLEPGLSDFDTDTVGFADSGGALLQIAFEFVPSEIRRCMPIIV 197 (549)
T ss_pred hheecccccCCCccceeEEEeecCccCcchh-hhhhhhhcccccccccccHHHHhhccHHHHhhhccCCHHHhhcCcceE
Confidence 58999999999999999999987542 222 234567899999999999999999999999999999998889999999
Q ss_pred EeehhhcccChhcHHHHHHHHHHHhhc-cCccc-cCCceEEcCCccchhhHHHHHHHhhccCCCCC--CCceeeEeeCCc
Q 018849 156 MATAGLRLVDVVVQDKILDSCRRVLRV-SGFRF-ADDWATVITGSDEGVYAWIVANYALGTLGGDP--SETTGIIELGGA 231 (349)
Q Consensus 156 ~ATAGmR~L~~~~~~~il~~vr~~l~~-~~f~f-~~~~v~VIsG~eEg~y~WvavNy~lg~l~~~~--~~t~gvlDlGGa 231 (349)
.||||+|++.......|+..+|.-|.+ ++|.. ..+.|.||.|.+||.|+|...||++++.+.+. +.|.+++|+|||
T Consensus 198 ~~taGlrl~Gds~s~~vl~s~r~~l~~n~~f~~y~g~~ieil~G~~Eg~~a~~~m~~~ls~~g~~~~~~~T~~v~d~gg~ 277 (549)
T COG5371 198 TATAGLRLLGDSRSDHVLVSTRLGLGANYAFRRYLGDLIEILNGVDEGNLADPCMNRGLSNDGTDAGTHGTGAVVDCGGG 277 (549)
T ss_pred EEEeeeeecCccchhhHHHHHHHhhccccccceecccceeeccCccccchhhhhhhhhhccccCCCcccCcccceeccCc
Confidence 999999999999999999999999975 45543 34679999999999999999999999987542 457789999999
Q ss_pred eeEEEeccCCC------CCccceeeeEecceeEEEEEeecccccHHHHHHHHHHHhccCCcchhhhhcCCCC---cCCCC
Q 018849 232 SVQVTFVSDEP------LPQEFSRTLKFGNVTYNLYSHSFLHFGQNVAFETLRELLSSGDFNTAAESLQKGT---YIDPC 302 (349)
Q Consensus 232 StQI~f~~~~~------~~~~~~~~~~l~~~~~~lys~S~Lg~G~~~ar~~~~~~l~~~~~~~~~~~~~~~~---~~~PC 302 (349)
||||.|.+... ....+...+.+++.+|++|.+|-++||++++++........+..++..+...... +.|||
T Consensus 278 stqll~~~r~~~~~~~~~DG~h~~~ldf~~e~~k~~g~Se~~Y~andv~~~~~~~~~~nflKsv~el~g~s~t~~l~~~~ 357 (549)
T COG5371 278 STQLLLKPRPCSDIPCLFDGGHKPLLDFANEEYKFYGDSELWYTANDVFKKGGSVAFRNFLKSVDELCGDSWTQILSHKE 357 (549)
T ss_pred ceeeeecCCCCccccccccCccccccccCCccceEEeehhhhhhHHHHHhhccceechhHHHHHHHHhcccchhhhcCcc
Confidence 99999987532 2234556778889999999999999999999998776655543332222222222 77999
Q ss_pred CCCCceeeeecCCCccccccce--eeeecCCCHH---hHHHHHHHHHhcCC
Q 018849 303 SPKGYLHHVESSPGSLAAKIDL--STLQAGGNFS---ECRSAALTLLQNGK 348 (349)
Q Consensus 303 ~p~Gy~~~~~~~~~~~~~~~~~--~~~~GtGnf~---~C~~~v~~lL~~~~ 348 (349)
+++--..+.+. +..+..+. +...|--+.. +|+......|.+++
T Consensus 358 l~~~i~~~~k~---s~~eak~~l~il~~G~d~p~~s~qcr~l~~~~L~kd~ 405 (549)
T COG5371 358 LGPSIRENLKD---SCFEAKWVLNILHEGFDNPLESHQCRNLADLILSKDP 405 (549)
T ss_pred cCcccchhhhh---hhhhhhhheeeeeeccCCcccchhhhhhhhhhhcccc
Confidence 99976665221 11122232 3336665554 99999999998764
No 5
>COG5371 Golgi nucleoside diphosphatase [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.8e-28 Score=238.45 Aligned_cols=255 Identities=27% Similarity=0.423 Sum_probs=197.2
Q ss_pred ceEEEEEEcCCCceEEEEEEeeCC-------CC-ccc--------cccceeecCCCCcccCCCcchHH-HHHHHHHHHHH
Q 018849 78 VKYGVLLDGGSTGTRIHVFSYDTE-------TN-HFD--------FDLGSMRLNPGLSSYAVNPTNAG-DSLKDLLDFAK 140 (349)
Q Consensus 78 ~~y~vVIDaGSsgtRl~Vy~~~~~-------~~-~~~--------~~~~~~k~~pGLss~~~~~~~a~-~~l~~Ll~~a~ 140 (349)
.+|++||||||+|+||+||.|+.. .| .+. ...+..|++||||+|..+|+.++ ..+++++++|+
T Consensus 3 ~~~~~~~d~~~s~~~v~~~~w~~~t~Ss~~~~~~si~~~~~~~~~~~~w~~k~~~~is~~~~k~~~~~~~~lkelLdfa~ 82 (549)
T COG5371 3 PRFGIVIDAGSSGSRVHVFKWDQDTESSLHATPQSILQSVTHIHQEPDWTFKLNPGISSFEKKPQDAEKSHLKELLDFAK 82 (549)
T ss_pred chhhhhhhhhcccceEEEEEeccCcccccCCCCccccccccCcccCCccccccCCcccccCCCccccccccccchhhhhh
Confidence 478999999999999999999641 11 111 13456889999999999999987 57999999999
Q ss_pred HhCCCCCcCCceEEEEeehhhcccChhcHHHHHHHHHHHhhc-cCccccC--CceEEcCCccchhhHHHHHHHhhccCCC
Q 018849 141 RKVPPAFWADTEIRLMATAGLRLVDVVVQDKILDSCRRVLRV-SGFRFAD--DWATVITGSDEGVYAWIVANYALGTLGG 217 (349)
Q Consensus 141 ~~ip~~~~~~tpv~l~ATAGmR~L~~~~~~~il~~vr~~l~~-~~f~f~~--~~v~VIsG~eEg~y~WvavNy~lg~l~~ 217 (349)
..||.+.|..+|+++.||||||+|+..-|.-++.-+++.+.. .-|...+ .-+++|+|+-|+.|+|.+.||+.+.|..
T Consensus 83 ~~IP~k~~~~~P~la~atA~~~lls~Dsq~~s~~~~~qYv~~idagstgsr~~iyqfidge~~~~~~~~~~n~L~~~l~d 162 (549)
T COG5371 83 NIIPEKTMPSLPVLAGATAAMRLLSQDSQPCSLIHLCQYVKMIDAGSTGSRSNIYQFIDGEIEGQYLWLNTNYLEPGLSD 162 (549)
T ss_pred ccCchhhccccceeccccccccccCCCCCchhhHhhhheecccccCCCccceeEEEeecCccCcchhhhhhhhhcccccc
Confidence 999999999999999999999999988888888886665532 1222221 2469999999999999999999998876
Q ss_pred CCCCceeeEeeCCceeEEEeccCCC-----CCccceee--eEecc--eeEEEEEeecccccHHHHHHHHHHHhccCCcch
Q 018849 218 DPSETTGIIELGGASVQVTFVSDEP-----LPQEFSRT--LKFGN--VTYNLYSHSFLHFGQNVAFETLRELLSSGDFNT 288 (349)
Q Consensus 218 ~~~~t~gvlDlGGaStQI~f~~~~~-----~~~~~~~~--~~l~~--~~~~lys~S~Lg~G~~~ar~~~~~~l~~~~~~~ 288 (349)
....|+|+.|+||+++||+|+.-.. .|....-+ +++.| +.+.|++..++|||.|+|+.+++..+++-
T Consensus 163 ~d~~t~G~~~s~~~l~qiA~~~~p~e~~r~~pi~~~~taGlrl~Gds~s~~vl~s~r~~l~~n~~f~~y~g~~iei---- 238 (549)
T COG5371 163 FDTDTVGFADSGGALLQIAFEFVPSEIRRCMPIIVTATAGLRLLGDSRSDHVLVSTRLGLGANYAFRRYLGDLIEI---- 238 (549)
T ss_pred cccccHHHHhhccHHHHhhhccCCHHHhhcCcceEEEEeeeeecCccchhhHHHHHHHhhccccccceecccceee----
Confidence 5667899999999999999975321 12111111 23223 47899999999999999999999776652
Q ss_pred hhhhcCCCCcCCCCCCCCceeeeecCCCccccccceeeeecCCCHHhHHHHHHHHHhcCC
Q 018849 289 AAESLQKGTYIDPCSPKGYLHHVESSPGSLAAKIDLSTLQAGGNFSECRSAALTLLQNGK 348 (349)
Q Consensus 289 ~~~~~~~~~~~~PC~p~Gy~~~~~~~~~~~~~~~~~~~~~GtGnf~~C~~~v~~lL~~~~ 348 (349)
.....++.+.+||.+.|-....+ ....+|||+..+|-...-+|+.+.+
T Consensus 239 -l~G~~Eg~~a~~~m~~~ls~~g~-----------~~~~~~T~~v~d~gg~stqll~~~r 286 (549)
T COG5371 239 -LNGVDEGNLADPCMNRGLSNDGT-----------DAGTHGTGAVVDCGGGSTQLLLKPR 286 (549)
T ss_pred -ccCccccchhhhhhhhhhccccC-----------CCcccCcccceeccCcceeeeecCC
Confidence 12334567889999998766532 1234899999999988888877653
No 6
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=99.82 E-value=1.2e-19 Score=175.22 Aligned_cols=154 Identities=23% Similarity=0.281 Sum_probs=114.4
Q ss_pred EEEEcCCCceEEEEEEeeCCC-CccccccceeecCCCCcccC-CCcchHHHHHHHHHHHHHHhCCCCCcCCceEEEEeeh
Q 018849 82 VLLDGGSTGTRIHVFSYDTET-NHFDFDLGSMRLNPGLSSYA-VNPTNAGDSLKDLLDFAKRKVPPAFWADTEIRLMATA 159 (349)
Q Consensus 82 vVIDaGSsgtRl~Vy~~~~~~-~~~~~~~~~~k~~pGLss~~-~~~~~a~~~l~~Ll~~a~~~ip~~~~~~tpv~l~ATA 159 (349)
++||+|||++|+.||++..+. ..+.......++..|+..-. -+++.+.+.+..|.+|.+.. +.++.+.+.++||+
T Consensus 3 AvIDiGSNsirl~I~~~~~~~~~~l~~~~~~vrL~~~~~~~g~i~~e~i~~~~~~l~~f~~~~---~~~~v~~i~~vaTs 79 (300)
T TIGR03706 3 AAIDIGSNSVRLVIARGVEGSLQVLFNEKEMVRLGEGLDSTGRLSEEAIERALEALKRFAELL---RGFPVDEVRAVATA 79 (300)
T ss_pred EEEEecCCeeeEEEEEecCCcEEEhhheeeeeecCCCCCCCCCcCHHHHHHHHHHHHHHHHHH---HhCCCCeEEEEEcH
Confidence 599999999999999986422 12221223356666664322 25666777777777777665 56788999999999
Q ss_pred hhcccChhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhhHHHHHHHhhccCCCCCCCceeeEeeCCceeEEEecc
Q 018849 160 GLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTFVS 239 (349)
Q Consensus 160 GmR~L~~~~~~~il~~vr~~l~~~~f~f~~~~v~VIsG~eEg~y~WvavNy~lg~l~~~~~~t~gvlDlGGaStQI~f~~ 239 (349)
+||. +.|+++|++.|+... |+. ++||||+|||.|.|+++...+.. ....++||||||||+++..
T Consensus 80 a~R~--A~N~~~~~~~i~~~t---gi~-----i~visg~eEa~l~~~gv~~~~~~------~~~~v~DiGGGSte~~~~~ 143 (300)
T TIGR03706 80 ALRD--AKNGPEFLREAEAIL---GLP-----IEVISGEEEARLIYLGVAHTLPI------ADGLVVDIGGGSTELILGK 143 (300)
T ss_pred HHHc--CCCHHHHHHHHHHHH---CCC-----eEEeChHHHHHHHHHHHHhCCCC------CCcEEEEecCCeEEEEEec
Confidence 9999 579999999999865 775 99999999999999999876531 2348999999999999986
Q ss_pred CCCCCccceeeeEecce
Q 018849 240 DEPLPQEFSRTLKFGNV 256 (349)
Q Consensus 240 ~~~~~~~~~~~~~l~~~ 256 (349)
++. ..+..++.+|..
T Consensus 144 ~~~--~~~~~Sl~lG~v 158 (300)
T TIGR03706 144 DFE--PGEGVSLPLGCV 158 (300)
T ss_pred CCC--EeEEEEEccceE
Confidence 542 234455666544
No 7
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.80 E-value=4.7e-19 Score=180.82 Aligned_cols=156 Identities=22% Similarity=0.276 Sum_probs=120.7
Q ss_pred EEEEEcCCCceEEEEEEeeCCCC-ccccccceeecCCCCcccCC-CcchHHHHHHHHHHHHHHhCCCCCcCCceEEEEee
Q 018849 81 GVLLDGGSTGTRIHVFSYDTETN-HFDFDLGSMRLNPGLSSYAV-NPTNAGDSLKDLLDFAKRKVPPAFWADTEIRLMAT 158 (349)
Q Consensus 81 ~vVIDaGSsgtRl~Vy~~~~~~~-~~~~~~~~~k~~pGLss~~~-~~~~a~~~l~~Ll~~a~~~ip~~~~~~tpv~l~AT 158 (349)
.++||+|||+.||.||+...+.. .+.-.....++..||.+-.. +++.+.+.+..|-.|++.. +.++...|+++||
T Consensus 5 ~A~IDiGSNS~rlvV~~~~~~~~~~l~~~k~~vrLgegl~~~g~L~~eai~R~~~aL~~f~e~~---~~~~~~~v~~vAT 81 (492)
T COG0248 5 VAAIDLGSNSFRLVVAEITPGSFQVLFREKRIVRLGEGLDATGNLSEEAIERALSALKRFAELL---DGFGAEEVRVVAT 81 (492)
T ss_pred EEEEEecCCeEEEEEEeccCCccchhhhhhhheehhcCccccCCcCHHHHHHHHHHHHHHHHHH---hhCCCCEEEEehh
Confidence 46999999999999999875322 22212334677888877654 4566677777777777765 5677888999999
Q ss_pred hhhcccChhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhhHHHHHHHhhccCCCCCCCceeeEeeCCceeEEEec
Q 018849 159 AGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTFV 238 (349)
Q Consensus 159 AGmR~L~~~~~~~il~~vr~~l~~~~f~f~~~~v~VIsG~eEg~y~WvavNy~lg~l~~~~~~t~gvlDlGGaStQI~f~ 238 (349)
+++|.+ .|+++|++.+++.+ |++ ++||||+|||+|+++||-..++. .....++||||||||+++.
T Consensus 82 sA~R~A--~N~~eFl~rv~~~~---G~~-----ievIsGeeEArl~~lGv~~~~~~-----~~~~lv~DIGGGStEl~~g 146 (492)
T COG0248 82 SALRDA--PNGDEFLARVEKEL---GLP-----IEVISGEEEARLIYLGVASTLPR-----KGDGLVIDIGGGSTELVLG 146 (492)
T ss_pred HHHHcC--CCHHHHHHHHHHHh---CCc-----eEEeccHHHHHHHHHHHHhcCCC-----CCCEEEEEecCCeEEEEEe
Confidence 999995 69999999999987 775 99999999999999999888763 2446799999999999998
Q ss_pred cCCCCCccceeeeEecce
Q 018849 239 SDEPLPQEFSRTLKFGNV 256 (349)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~ 256 (349)
.+.. .....++.+|..
T Consensus 147 ~~~~--~~~~~Sl~~G~v 162 (492)
T COG0248 147 DNFE--IGLLISLPLGCV 162 (492)
T ss_pred cCCc--cceeEEeecceE
Confidence 6432 344556666654
No 8
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=99.79 E-value=1.1e-18 Score=179.19 Aligned_cols=159 Identities=25% Similarity=0.295 Sum_probs=117.0
Q ss_pred ceEEEEEEcCCCceEEEEEEeeCCCC-ccccccceeecCCCCcccC-CCcchHHHHHHHHHHHHHHhCCCCCcCCceEEE
Q 018849 78 VKYGVLLDGGSTGTRIHVFSYDTETN-HFDFDLGSMRLNPGLSSYA-VNPTNAGDSLKDLLDFAKRKVPPAFWADTEIRL 155 (349)
Q Consensus 78 ~~y~vVIDaGSsgtRl~Vy~~~~~~~-~~~~~~~~~k~~pGLss~~-~~~~~a~~~l~~Ll~~a~~~ip~~~~~~tpv~l 155 (349)
..+.+|||+|||+.||.||+...+.. .++......+++.|+.... -.++.+.+.+..|-+|++.. +.++.+.|.+
T Consensus 5 ~~~~A~IDIGSNSirL~I~~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~F~~~~---~~~~v~~i~~ 81 (496)
T PRK11031 5 SSLYAAIDLGSNSFHMLVVREVAGSIQTLARIKRKVRLAAGLDSDNALSNEAMERGWQCLRLFAERL---QDIPPSQIRV 81 (496)
T ss_pred CCEEEEEEccccceeEEEEEecCCceEEeecceeEEEccCCcCcCCCcCHHHHHHHHHHHHHHHHHH---HhCCCCeEEE
Confidence 34557999999999999999755321 2221223456666665432 24667777777777777665 5577889999
Q ss_pred EeehhhcccChhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhhHHHHHHHhhccCCCCCCCceeeEeeCCceeEE
Q 018849 156 MATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQV 235 (349)
Q Consensus 156 ~ATAGmR~L~~~~~~~il~~vr~~l~~~~f~f~~~~v~VIsG~eEg~y~WvavNy~lg~l~~~~~~t~gvlDlGGaStQI 235 (349)
+||+++|. ++|+++|++.+++.+ |++ |+||||+|||.|.++||-..+. . .+...++||||||||+
T Consensus 82 vATsAvRe--A~N~~~fl~~i~~~t---Gl~-----ievIsG~eEA~l~~~gv~~~l~---~--~~~~lviDIGGGStEl 146 (496)
T PRK11031 82 VATATLRL--AVNADEFLAKAQEIL---GCP-----VQVISGEEEARLIYQGVAHTTG---G--ADQRLVVDIGGASTEL 146 (496)
T ss_pred EEeHHHHc--CcCHHHHHHHHHHHH---CCC-----eEEeCHHHHHHHHHHhhhhccC---C--CCCEEEEEecCCeeeE
Confidence 99999999 579999999999965 785 9999999999999999977653 1 1346799999999999
Q ss_pred EeccCCCCCccceeeeEecce
Q 018849 236 TFVSDEPLPQEFSRTLKFGNV 256 (349)
Q Consensus 236 ~f~~~~~~~~~~~~~~~l~~~ 256 (349)
++..+.. ..+..++.+|..
T Consensus 147 ~~~~~~~--~~~~~Sl~lG~v 165 (496)
T PRK11031 147 VTGTGAQ--ATSLFSLSMGCV 165 (496)
T ss_pred EEecCCc--eeeeeEEeccch
Confidence 9975432 234445555543
No 9
>PRK10854 exopolyphosphatase; Provisional
Probab=99.78 E-value=1.9e-18 Score=178.23 Aligned_cols=158 Identities=16% Similarity=0.205 Sum_probs=116.0
Q ss_pred EEEEEEcCCCceEEEEEEeeCCCC-ccccccceeecCCCCcccCC-CcchHHHHHHHHHHHHHHhCCCCCcCCceEEEEe
Q 018849 80 YGVLLDGGSTGTRIHVFSYDTETN-HFDFDLGSMRLNPGLSSYAV-NPTNAGDSLKDLLDFAKRKVPPAFWADTEIRLMA 157 (349)
Q Consensus 80 y~vVIDaGSsgtRl~Vy~~~~~~~-~~~~~~~~~k~~pGLss~~~-~~~~a~~~l~~Ll~~a~~~ip~~~~~~tpv~l~A 157 (349)
..+|||+|||+.||.||+...+.. .++......++..|+..... +++.+.+.+..|-+|.+.. +.++.+.+.++|
T Consensus 12 ~~A~IDIGSNSirL~I~e~~~~~~~~i~~~k~~vrLg~g~~~~g~Ls~e~~~r~~~~L~~F~~~~---~~~~v~~v~~vA 88 (513)
T PRK10854 12 EFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLDSDNMLSEEAMERGLNCLSLFAERL---QGFSPANVCIVG 88 (513)
T ss_pred EEEEEEeccchheEEEEEecCCcEEEeeeeeEEEECCCCcCCCCCcCHHHHHHHHHHHHHHHHHH---HhCCCCeEEEEe
Confidence 446999999999999999865321 22111233556666644322 4666777777777776654 556788999999
Q ss_pred ehhhcccChhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhhHHHHHHHhhccCCCCCCCceeeEeeCCceeEEEe
Q 018849 158 TAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTF 237 (349)
Q Consensus 158 TAGmR~L~~~~~~~il~~vr~~l~~~~f~f~~~~v~VIsG~eEg~y~WvavNy~lg~l~~~~~~t~gvlDlGGaStQI~f 237 (349)
|++||. ++|+++|++.+++.+ |+. ++||||+|||.|.|+||-+.+.. .+...++||||||||+++
T Consensus 89 TsAlRe--A~N~~~fl~~i~~~t---Gl~-----i~vIsG~EEA~l~~~gv~~~l~~-----~~~~lvvDIGGGStEl~~ 153 (513)
T PRK10854 89 THTLRQ--ALNATDFLKRAEKVI---PYP-----IEIISGNEEARLIFMGVEHTQPE-----KGRKLVIDIGGGSTELVI 153 (513)
T ss_pred hHHHHc--CcCHHHHHHHHHHHH---CCC-----eEEeCHHHHHHHHHhhhhcccCC-----CCCeEEEEeCCCeEEEEE
Confidence 999999 579999999999965 785 99999999999999999776531 134679999999999999
Q ss_pred ccCCCCCccceeeeEeccee
Q 018849 238 VSDEPLPQEFSRTLKFGNVT 257 (349)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~~ 257 (349)
..+.. ..+..++.+|...
T Consensus 154 ~~~~~--~~~~~S~~lG~vr 171 (513)
T PRK10854 154 GENFE--PILVESRRMGCVS 171 (513)
T ss_pred ecCCC--eeEeEEEecceee
Confidence 86532 2445555665543
No 10
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=99.54 E-value=5.1e-14 Score=134.67 Aligned_cols=128 Identities=19% Similarity=0.305 Sum_probs=88.1
Q ss_pred EEEeeCCCCcc-ccccceeecCCCCcccCC-CcchHHHHHHHHHHHHHHhCCCCCcCCceEEEEeehhhcccChhcHHHH
Q 018849 95 VFSYDTETNHF-DFDLGSMRLNPGLSSYAV-NPTNAGDSLKDLLDFAKRKVPPAFWADTEIRLMATAGLRLVDVVVQDKI 172 (349)
Q Consensus 95 Vy~~~~~~~~~-~~~~~~~k~~pGLss~~~-~~~~a~~~l~~Ll~~a~~~ip~~~~~~tpv~l~ATAGmR~L~~~~~~~i 172 (349)
||+...+...+ .-.....++..|+..-.. .++.+.+.+..|-+|.+.. +.++.+.|+++||++||. ++|+++|
T Consensus 2 I~~~~~~~~~~l~~~~~~vrLg~~~~~~g~i~~e~i~r~~~~L~~f~~~~---~~~~v~~i~~vATsA~R~--A~N~~~~ 76 (285)
T PF02541_consen 2 IAEVKDGKFKILEEEKEIVRLGEGVFETGRISEEAIERAIDALKRFKEIL---KDYGVEKIRAVATSALRE--AKNSDEF 76 (285)
T ss_dssp EEEEETTEEEEEEEEEEE--TTTTHHHHSSB-HHHHHHHHHHHHHHHHHH---HHTTGSEEEEEEEHHHHH--STTHHHH
T ss_pred EEEeCCCCeEEeeeceEEEEcccccccCCCcCHHHHHHHHHHHHHHHHHH---HHCCCCEEEEEhhHHHHh--CcCHHHH
Confidence 66666543211 101122344444422222 4555666666666665554 567789999999999999 5799999
Q ss_pred HHHHHHHhhccCccccCCceEEcCCccchhhHHHHHHHhhccCCCCCCCceeeEeeCCceeEEEeccC
Q 018849 173 LDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTFVSD 240 (349)
Q Consensus 173 l~~vr~~l~~~~f~f~~~~v~VIsG~eEg~y~WvavNy~lg~l~~~~~~t~gvlDlGGaStQI~f~~~ 240 (349)
++++++.+ |+. ++||||+|||.|+++|+-..+. +.+...++|+||||||+++..+
T Consensus 77 ~~~i~~~t---Gi~-----i~iIsgeeEa~l~~~gv~~~l~-----~~~~~lviDIGGGStEl~~~~~ 131 (285)
T PF02541_consen 77 LDRIKKET---GID-----IEIISGEEEARLSFLGVLSSLP-----PDKNGLVIDIGGGSTELILFEN 131 (285)
T ss_dssp HHHHHHHH---SS------EEEE-HHHHHHHHHHHHHHHST-----TTSSEEEEEEESSEEEEEEEET
T ss_pred HHHHHHHh---CCc-----eEEecHHHHHHHHHHHHHhhcc-----ccCCEEEEEECCCceEEEEEEC
Confidence 99999965 775 9999999999999999977651 2356779999999999998754
No 11
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=97.89 E-value=4.6e-05 Score=72.67 Aligned_cols=131 Identities=18% Similarity=0.234 Sum_probs=74.7
Q ss_pred CCceEEEEEEcCCCceEEEEEEeeCCCCcccc-ccceeecCCCCcccCCCcchHHHHHHHHHHHHHHhCCCCCcCCceEE
Q 018849 76 SSVKYGVLLDGGSTGTRIHVFSYDTETNHFDF-DLGSMRLNPGLSSYAVNPTNAGDSLKDLLDFAKRKVPPAFWADTEIR 154 (349)
Q Consensus 76 ~~~~y~vVIDaGSsgtRl~Vy~~~~~~~~~~~-~~~~~k~~pGLss~~~~~~~a~~~l~~Ll~~a~~~ip~~~~~~tpv~ 154 (349)
.+..+.++||+|||++|+.|++.... .+.. ...+.-+..|. ..|-+.+...|+.+++.|++.... ++.
T Consensus 21 ~~~~~~~~iDiGSssi~~vv~~~~~~--~~~~~~~~~~~vr~G~---i~di~~a~~~i~~~~~~ae~~~g~------~i~ 89 (267)
T PRK15080 21 TESPLKVGVDLGTANIVLAVLDEDGQ--PVAGALEWADVVRDGI---VVDFIGAVTIVRRLKATLEEKLGR------ELT 89 (267)
T ss_pred CCCCEEEEEEccCceEEEEEEcCCCC--EEEEEeccccccCCCE---EeeHHHHHHHHHHHHHHHHHHhCC------CcC
Confidence 45678899999999999999865322 2211 11122233332 335777888999999988776422 122
Q ss_pred EEeehhhcccC-hhcHHHHHHHHHHHhhccCccccCCceE-EcCCccchhhHHHHHHHhhccCCCCCCCceeeEeeCCce
Q 018849 155 LMATAGLRLVD-VVVQDKILDSCRRVLRVSGFRFADDWAT-VITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGAS 232 (349)
Q Consensus 155 l~ATAGmR~L~-~~~~~~il~~vr~~l~~~~f~f~~~~v~-VIsG~eEg~y~WvavNy~lg~l~~~~~~t~gvlDlGGaS 232 (349)
-.+| +++.-. ..++..+.+ .++..|+. +. ++++.. |+-+.++. +...++|||||+
T Consensus 90 ~v~~-~vp~~~~~~~~~~~~~----~~~~aGl~-----~~~ii~e~~-------A~a~~~~~------~~~~vvDIGggt 146 (267)
T PRK15080 90 HAAT-AIPPGTSEGDPRAIIN----VVESAGLE-----VTHVLDEPT-------AAAAVLGI------DNGAVVDIGGGT 146 (267)
T ss_pred eEEE-EeCCCCCchhHHHHHH----HHHHcCCc-----eEEEechHH-------HHHHHhCC------CCcEEEEeCCCc
Confidence 3334 333321 124555443 33345774 44 665332 22222221 125799999999
Q ss_pred eEEEeccC
Q 018849 233 VQVTFVSD 240 (349)
Q Consensus 233 tQI~f~~~ 240 (349)
|+++...+
T Consensus 147 t~i~v~~~ 154 (267)
T PRK15080 147 TGISILKD 154 (267)
T ss_pred EEEEEEEC
Confidence 99987643
No 12
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=95.51 E-value=0.18 Score=51.14 Aligned_cols=62 Identities=16% Similarity=0.063 Sum_probs=41.2
Q ss_pred eEEEEEEcCCCceEEEEEEeeC-CCCccccccceeecCCCCcc-cCCCcchHHHHHHHHHHHHHHh
Q 018849 79 KYGVLLDGGSTGTRIHVFSYDT-ETNHFDFDLGSMRLNPGLSS-YAVNPTNAGDSLKDLLDFAKRK 142 (349)
Q Consensus 79 ~y~vVIDaGSsgtRl~Vy~~~~-~~~~~~~~~~~~k~~pGLss-~~~~~~~a~~~l~~Ll~~a~~~ 142 (349)
++.+.||+||+.+++.|-++.. +...+. ...... ..|+.. ...|.+.+.++|+.+++.|++.
T Consensus 8 ~~i~~lDIGsskv~~vv~~~~~~~~~~i~-g~~~~~-s~gi~~G~I~d~~~~~~aI~~av~~ae~~ 71 (420)
T PRK09472 8 KLVVGLEIGTAKVAALVGEVLPDGMVNII-GVGSCP-SRGMDKGGVNDLESVVKCVQRAIDQAELM 71 (420)
T ss_pred CEEEEEEcccceEEEEEEEEcCCCCEEEE-EEEEcc-CCCccCCEEEcHHHHHHHHHHHHHHHHHH
Confidence 5778999999999999988754 222221 011111 234332 2347888999999999999865
No 13
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=95.44 E-value=0.056 Score=50.74 Aligned_cols=139 Identities=17% Similarity=0.182 Sum_probs=77.2
Q ss_pred EEcCCCceEEEEEEeeCCCCccccccceeecC-CCCcc-cCCCcchHHHHHHHHHHHHHHhCCCCCcCCceEEEEeehhh
Q 018849 84 LDGGSTGTRIHVFSYDTETNHFDFDLGSMRLN-PGLSS-YAVNPTNAGDSLKDLLDFAKRKVPPAFWADTEIRLMATAGL 161 (349)
Q Consensus 84 IDaGSsgtRl~Vy~~~~~~~~~~~~~~~~k~~-pGLss-~~~~~~~a~~~l~~Ll~~a~~~ip~~~~~~tpv~l~ATAGm 161 (349)
||+||++.++.+.+...+. + ...... -++.. -..|.+.+...|+.+++.++..+.. ..+.+.+--.+.+
T Consensus 2 ~dig~~~ik~v~~~~~~~~--~----~~~~~~~~~~~~g~I~d~~~~~~~l~~l~~~a~~~~g~---~~~~vvisVP~~~ 72 (239)
T TIGR02529 2 VDLGTANIVIVVLDEDGQP--V----AGVMQFADVVRDGIVVDFLGAVEIVRRLKDTLEQKLGI---ELTHAATAIPPGT 72 (239)
T ss_pred CCcccceEEEEEEecCCCE--E----EEEecccccccCCeEEEhHHHHHHHHHHHHHHHHHhCC---CcCcEEEEECCCC
Confidence 7999999999988765421 1 111111 12222 1236778888999999888766432 2233443333344
Q ss_pred cccChhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhhHHHHHHHhhccCCCCCCCceeeEeeCCceeEEEeccCC
Q 018849 162 RLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTFVSDE 241 (349)
Q Consensus 162 R~L~~~~~~~il~~vr~~l~~~~f~f~~~~v~VIsG~eEg~y~WvavNy~lg~l~~~~~~t~gvlDlGGaStQI~f~~~~ 241 (349)
- ..+++++.+.++. .|+. .+.++ .|..-++++ |.+ ....++||||++|.++.....
T Consensus 73 ~---~~~r~a~~~a~~~----aGl~----~~~li---~ep~Aaa~~--~~~--------~~~~vvDiGggtt~i~i~~~G 128 (239)
T TIGR02529 73 I---EGDPKVIVNVIES----AGIE----VLHVL---DEPTAAAAV--LQI--------KNGAVVDVGGGTTGISILKKG 128 (239)
T ss_pred C---cccHHHHHHHHHH----cCCc----eEEEe---ehHHHHHHH--hcC--------CCcEEEEeCCCcEEEEEEECC
Confidence 3 3456666655555 3664 23333 344444443 211 124799999999999875432
Q ss_pred CCCccceeeeEeccee
Q 018849 242 PLPQEFSRTLKFGNVT 257 (349)
Q Consensus 242 ~~~~~~~~~~~l~~~~ 257 (349)
. ..+.+.+.++|.+
T Consensus 129 ~--i~~~~~~~~GG~~ 142 (239)
T TIGR02529 129 K--VIYSADEPTGGTH 142 (239)
T ss_pred e--EEEEEeeecchHH
Confidence 1 2234445555543
No 14
>CHL00094 dnaK heat shock protein 70
Probab=94.82 E-value=1.3 Score=47.26 Aligned_cols=18 Identities=28% Similarity=0.274 Sum_probs=15.8
Q ss_pred EEEEEEcCCCceEEEEEE
Q 018849 80 YGVLLDGGSTGTRIHVFS 97 (349)
Q Consensus 80 y~vVIDaGSsgtRl~Vy~ 97 (349)
+.+-||.|++.+.+-+++
T Consensus 3 ~viGIDlGTt~s~va~~~ 20 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVME 20 (621)
T ss_pred ceEEEEeCcccEEEEEEE
Confidence 678999999999998874
No 15
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=94.58 E-value=1.8 Score=46.21 Aligned_cols=39 Identities=13% Similarity=0.409 Sum_probs=25.1
Q ss_pred eEEcCCccchhhHHHHHHHhhccCCCCCCCceeeEeeCCceeEEEec
Q 018849 192 ATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTFV 238 (349)
Q Consensus 192 v~VIsG~eEg~y~WvavNy~lg~l~~~~~~t~gvlDlGGaStQI~f~ 238 (349)
+++|+...=|.++| .+.. .....+.|+|+|||++.|+..
T Consensus 180 ~~li~EPtAAAlay-----~~~~---~~~~~vlV~DlGGGT~DvSv~ 218 (616)
T PRK05183 180 LRLLNEPTAAAIAY-----GLDS---GQEGVIAVYDLGGGTFDISIL 218 (616)
T ss_pred EEEecchHHHHHHh-----hccc---CCCCEEEEEECCCCeEEEEEE
Confidence 57777655444443 3321 123567899999999999765
No 16
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=94.55 E-value=0.87 Score=45.18 Aligned_cols=62 Identities=15% Similarity=-0.037 Sum_probs=40.9
Q ss_pred EEEEEcCCCceEEEEEEeeCCC-CccccccceeecCCCCccc-CCCcchHHHHHHHHHHHHHHhCC
Q 018849 81 GVLLDGGSTGTRIHVFSYDTET-NHFDFDLGSMRLNPGLSSY-AVNPTNAGDSLKDLLDFAKRKVP 144 (349)
Q Consensus 81 ~vVIDaGSsgtRl~Vy~~~~~~-~~~~~~~~~~k~~pGLss~-~~~~~~a~~~l~~Ll~~a~~~ip 144 (349)
.+.||+||+.+++.+-+..... ..+. -....-..|+..- ..|.+.+.+.|+.+++.|++..+
T Consensus 2 ~~~lDIGs~~ik~vv~~~~~~~~~~i~--~~~~~~~~gi~~G~I~d~~~~~~~i~~al~~~e~~~~ 65 (371)
T TIGR01174 2 IVGLDIGTSKICAIVAEVLEDGELNII--GVGTHPSRGIKKGVINDIEAAVGSIQRAIEAAELMAG 65 (371)
T ss_pred EEEEEeccceEEEEEEEEcCCCCEEEE--EEEEecCCCccCcEEEcHHHHHHHHHHHHHHHHHHhC
Confidence 3689999999999998876532 2221 1111112354432 23778889999999999987654
No 17
>PRK13410 molecular chaperone DnaK; Provisional
Probab=94.35 E-value=2.1 Score=46.33 Aligned_cols=40 Identities=20% Similarity=0.477 Sum_probs=25.2
Q ss_pred eEEcCCccchhhHHHHHHHhhccCCCCCCCceeeEeeCCceeEEEecc
Q 018849 192 ATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTFVS 239 (349)
Q Consensus 192 v~VIsG~eEg~y~WvavNy~lg~l~~~~~~t~gvlDlGGaStQI~f~~ 239 (349)
+++|+...=|.+ .|.+.. ....++.|+|||||++.++...
T Consensus 166 ~~li~EPtAAAl-----ayg~~~---~~~~~vlV~DlGgGT~Dvsv~~ 205 (668)
T PRK13410 166 ERILNEPTAAAL-----AYGLDR---SSSQTVLVFDLGGGTFDVSLLE 205 (668)
T ss_pred EEEecchHHHHH-----Hhcccc---CCCCEEEEEECCCCeEEEEEEE
Confidence 567665544433 343321 1235688999999999998753
No 18
>PRK13411 molecular chaperone DnaK; Provisional
Probab=94.21 E-value=2.3 Score=45.78 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=15.5
Q ss_pred EEEEEEcCCCceEEEEEE
Q 018849 80 YGVLLDGGSTGTRIHVFS 97 (349)
Q Consensus 80 y~vVIDaGSsgtRl~Vy~ 97 (349)
+.+-||.|++.|.+-+++
T Consensus 3 ~viGIDlGTt~s~va~~~ 20 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLE 20 (653)
T ss_pred cEEEEEeCcccEEEEEEE
Confidence 568899999999998875
No 19
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=93.89 E-value=1 Score=46.57 Aligned_cols=159 Identities=17% Similarity=0.153 Sum_probs=74.5
Q ss_pred eEEEEEEcCCCceEEEEEEeeCCC-------Ccccc--ccceeec----CCCCcccCCCcchHHHHHHHHHHHH--HHhC
Q 018849 79 KYGVLLDGGSTGTRIHVFSYDTET-------NHFDF--DLGSMRL----NPGLSSYAVNPTNAGDSLKDLLDFA--KRKV 143 (349)
Q Consensus 79 ~y~vVIDaGSsgtRl~Vy~~~~~~-------~~~~~--~~~~~k~----~pGLss~~~~~~~a~~~l~~Ll~~a--~~~i 143 (349)
-..|=||+|+|+|.|.+=+..-.+ |.+.+ .+...|. .|=++.-.-|. +.++.+++.- +.-|
T Consensus 6 i~SVGIDIGTsTTqlvfSrl~l~n~a~~~~vpr~~I~dkev~yrS~i~fTPl~~~~~ID~----~~i~~~V~~ey~~Agi 81 (475)
T PRK10719 6 LLSVGIDIGTTTTQVIFSRLELENRASVFQVPRIEIIDKEIIYRSPIYFTPLLKQGEIDE----AAIKELIEEEYQKAGI 81 (475)
T ss_pred EEEEEEeccCceEEEEEEEEEEecccccccCceEEEeeeEEEEecCceecCCCCCccccH----HHHHHHHHHHHHHcCC
Confidence 456889999999999887775411 22221 1111221 22222222223 4555555532 2223
Q ss_pred CCCCc-CCceEEEEeehhhcccChhcHHHHHHHHHHHhhccCccccCCceEEcCC-ccchhhHHHHHHHhhccCCCCCCC
Q 018849 144 PPAFW-ADTEIRLMATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITG-SDEGVYAWIVANYALGTLGGDPSE 221 (349)
Q Consensus 144 p~~~~-~~tpv~l~ATAGmR~L~~~~~~~il~~vr~~l~~~~f~f~~~~v~VIsG-~eEg~y~WvavNy~lg~l~~~~~~ 221 (349)
.++.- ....|.-..|+.++. -.+.++.+..... +|-. --.| +-|++++-+|.-... |..+.+.
T Consensus 82 ~~~die~~ahIITg~~~~~~N-----l~~~v~~~~~~~g--dfVV------A~AG~~le~iva~~ASg~av--LseEke~ 146 (475)
T PRK10719 82 APESIDSGAVIITGETARKEN-----AREVVMALSGSAG--DFVV------ATAGPDLESIIAGKGAGAQT--LSEERNT 146 (475)
T ss_pred CHHHccccEEEEEechhHHHH-----HHHHHHHhccccc--ceee------eccCccHHHhhhHHHhhHHH--hhhhccC
Confidence 22222 123444445554433 3444443322221 2210 0012 335555444433221 2222334
Q ss_pred ceeeEeeCCceeEEEeccCCCCCccceeeeEecceeE
Q 018849 222 TTGIIELGGASVQVTFVSDEPLPQEFSRTLKFGNVTY 258 (349)
Q Consensus 222 t~gvlDlGGaStQI~f~~~~~~~~~~~~~~~l~~~~~ 258 (349)
.+.+||||||.|.++...+.. ..+...+.++|..+
T Consensus 147 gVa~IDIGgGTT~iaVf~~G~--l~~T~~l~vGG~~I 181 (475)
T PRK10719 147 RVLNIDIGGGTANYALFDAGK--VIDTACLNVGGRLI 181 (475)
T ss_pred ceEEEEeCCCceEEEEEECCE--EEEEEEEecccceE
Confidence 566899999999999876543 23444555555433
No 20
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=93.78 E-value=0.7 Score=45.64 Aligned_cols=36 Identities=17% Similarity=0.155 Sum_probs=23.9
Q ss_pred CceeeEeeCCceeEEEeccCCCCCccceeeeEecce
Q 018849 221 ETTGIIELGGASVQVTFVSDEPLPQEFSRTLKFGNV 256 (349)
Q Consensus 221 ~t~gvlDlGGaStQI~f~~~~~~~~~~~~~~~l~~~ 256 (349)
.+..|||+|+++|.|+-..+...-......++++|.
T Consensus 143 ~~~lVVDiG~~~t~i~pv~~G~~~~~~~~~~~~GG~ 178 (371)
T cd00012 143 TTGLVVDSGDGVTHVVPVYDGYVLPHAIKRLDLAGR 178 (371)
T ss_pred CeEEEEECCCCeeEEEEEECCEEchhhheeccccHH
Confidence 455699999999999877654332333445556654
No 21
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=93.71 E-value=2.6 Score=44.60 Aligned_cols=20 Identities=25% Similarity=0.569 Sum_probs=16.5
Q ss_pred CCceeeEeeCCceeEEEecc
Q 018849 220 SETTGIIELGGASVQVTFVS 239 (349)
Q Consensus 220 ~~t~gvlDlGGaStQI~f~~ 239 (349)
..++.|+|+|||++.++...
T Consensus 182 ~~~vlV~D~Gggt~dvsv~~ 201 (595)
T TIGR02350 182 DEKILVFDLGGGTFDVSILE 201 (595)
T ss_pred CcEEEEEECCCCeEEEEEEE
Confidence 35678999999999998753
No 22
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=93.69 E-value=0.53 Score=46.50 Aligned_cols=36 Identities=17% Similarity=0.151 Sum_probs=22.7
Q ss_pred CceeeEeeCCceeEEEeccCCCCCccceeeeEecce
Q 018849 221 ETTGIIELGGASVQVTFVSDEPLPQEFSRTLKFGNV 256 (349)
Q Consensus 221 ~t~gvlDlGGaStQI~f~~~~~~~~~~~~~~~l~~~ 256 (349)
.+..|||+|+++|.|+-..+...-.+..+.++++|.
T Consensus 143 ~~~lVVDiG~~~t~v~pv~~G~~~~~~~~~~~~GG~ 178 (373)
T smart00268 143 TTGLVIDSGDGVTHVVPVVDGYVLPHAIKRIDIAGR 178 (373)
T ss_pred CEEEEEecCCCcceEEEEECCEEchhhheeccCcHH
Confidence 455689999999999876654322233344445543
No 23
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=93.69 E-value=2.7 Score=44.77 Aligned_cols=19 Identities=21% Similarity=0.532 Sum_probs=16.0
Q ss_pred CceeeEeeCCceeEEEecc
Q 018849 221 ETTGIIELGGASVQVTFVS 239 (349)
Q Consensus 221 ~t~gvlDlGGaStQI~f~~ 239 (349)
.++.|+|+|||++.|+...
T Consensus 181 ~~vlV~DlGgGT~DvSi~~ 199 (599)
T TIGR01991 181 GIYAVYDLGGGTFDVSILK 199 (599)
T ss_pred CEEEEEEcCCCeEEEEEEE
Confidence 5678999999999998653
No 24
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=93.66 E-value=0.21 Score=50.92 Aligned_cols=62 Identities=21% Similarity=0.210 Sum_probs=44.1
Q ss_pred EEEEEEcCCCceEEEEEEeeCCCCcccc----ccceeecCCCCcccCCCcchHHHHHHHHHHHHHHhCCC
Q 018849 80 YGVLLDGGSTGTRIHVFSYDTETNHFDF----DLGSMRLNPGLSSYAVNPTNAGDSLKDLLDFAKRKVPP 145 (349)
Q Consensus 80 y~vVIDaGSsgtRl~Vy~~~~~~~~~~~----~~~~~k~~pGLss~~~~~~~a~~~l~~Ll~~a~~~ip~ 145 (349)
+.+.+|+||+.+...|-+...+. .+.. ...+.-++.|. ..|.+.+.++++..++.|++..-.
T Consensus 7 ~iv~LDIGTskV~~lVge~~~~g-~i~iig~g~~~SrGik~G~---I~di~~~~~sI~~av~~AE~mag~ 72 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELRPDG-RLNIIGVGSHPSRGIKKGV---IVDLDAAAQSIKKAVEAAERMAGC 72 (418)
T ss_pred eEEEEEccCcEEEEEEEEEcCCC-eEEEEeeecccCcccccce---EEcHHHHHHHHHHHHHHHHHhcCC
Confidence 77899999999999999987743 1221 11222333442 347889999999999999987543
No 25
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=93.50 E-value=3.3 Score=44.22 Aligned_cols=20 Identities=25% Similarity=0.541 Sum_probs=16.5
Q ss_pred CCceeeEeeCCceeEEEecc
Q 018849 220 SETTGIIELGGASVQVTFVS 239 (349)
Q Consensus 220 ~~t~gvlDlGGaStQI~f~~ 239 (349)
..++.|+|+|||++.++...
T Consensus 184 ~~~vlV~D~GggT~dvsv~~ 203 (627)
T PRK00290 184 DEKILVYDLGGGTFDVSILE 203 (627)
T ss_pred CCEEEEEECCCCeEEEEEEE
Confidence 35688999999999998753
No 26
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=93.45 E-value=7.9 Score=37.95 Aligned_cols=96 Identities=18% Similarity=0.229 Sum_probs=50.5
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCcCCceEEEEeehhhcccChhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhh
Q 018849 124 NPTNAGDSLKDLLDFAKRKVPPAFWADTEIRLMATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVY 203 (349)
Q Consensus 124 ~~~~a~~~l~~Ll~~a~~~ip~~~~~~tpv~l~ATAGmR~L~~~~~~~il~~vr~~l~~~~f~f~~~~v~VIsG~eEg~y 203 (349)
+.+.+...|..+++.+.+.+... ...|-.+.+.... .+..+++++.+.++.. |+. .+.+|.. ..
T Consensus 73 d~d~~~~~l~~~~~~~~~~l~~~--~~~~~vvitvP~~--~~~~~R~~l~~a~~~a----g~~----~~~li~e---p~- 136 (335)
T PRK13929 73 DYDMTTDLLKQIMKKAGKNIGMT--FRKPNVVVCTPSG--STAVERRAISDAVKNC----GAK----NVHLIEE---PV- 136 (335)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCC--CCCCeEEEEcCCC--CCHHHHHHHHHHHHHc----CCC----eeEeecC---HH-
Confidence 44555556666776654433111 1123334444432 4456778877766553 443 3555543 32
Q ss_pred HHHHHHHhhccCCCCCCCceeeEeeCCceeEEEecc
Q 018849 204 AWIVANYALGTLGGDPSETTGIIELGGASVQVTFVS 239 (349)
Q Consensus 204 ~WvavNy~lg~l~~~~~~t~gvlDlGGaStQI~f~~ 239 (349)
++-+..|. ..+...+..++|+|||+|+++...
T Consensus 137 ---Aaa~~~g~-~~~~~~~~lvvDiG~gtt~v~vi~ 168 (335)
T PRK13929 137 ---AAAIGADL-PVDEPVANVVVDIGGGTTEVAIIS 168 (335)
T ss_pred ---HHHHhcCC-CcCCCceEEEEEeCCCeEEEEEEE
Confidence 22222231 111223466999999999999864
No 27
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=93.06 E-value=0.38 Score=50.08 Aligned_cols=86 Identities=13% Similarity=-0.024 Sum_probs=56.5
Q ss_pred ceEEEEEEcCCCceEEEEEEeeCCCCccccccceeecCCCCcccCCCcchHHHHHHHHHHHHHHhCCCCCcCCceEEEEe
Q 018849 78 VKYGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMRLNPGLSSYAVNPTNAGDSLKDLLDFAKRKVPPAFWADTEIRLMA 157 (349)
Q Consensus 78 ~~y~vVIDaGSsgtRl~Vy~~~~~~~~~~~~~~~~k~~pGLss~~~~~~~a~~~l~~Ll~~a~~~ip~~~~~~tpv~l~A 157 (349)
....+.||.|+|++|..||+..++.+.-..+.......|-=..+..+|+++...+..+++.+.+..+........+....
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~~~e~l~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~~~~~~~~~~ig 84 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAKNGELLSLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVLNIKVVGATCIG 84 (516)
T ss_pred cceEEEEEcCCCceEEEEEecCCCccceeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhccccccccccEEEE
Confidence 56778999999999999999766443211111222222222234558999999999999999887765554444455555
Q ss_pred ehhhcc
Q 018849 158 TAGLRL 163 (349)
Q Consensus 158 TAGmR~ 163 (349)
.++.|.
T Consensus 85 v~~qr~ 90 (516)
T KOG2517|consen 85 VVNQRE 90 (516)
T ss_pred EEecCC
Confidence 666665
No 28
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=92.89 E-value=1.9 Score=44.60 Aligned_cols=155 Identities=17% Similarity=0.270 Sum_probs=78.2
Q ss_pred EEEEEEcCCCceEEEEEEeeCC-------CCcccc--ccceeec----CCCCcccCCCcchHHHHHHHHHHH--HHHhCC
Q 018849 80 YGVLLDGGSTGTRIHVFSYDTE-------TNHFDF--DLGSMRL----NPGLSSYAVNPTNAGDSLKDLLDF--AKRKVP 144 (349)
Q Consensus 80 y~vVIDaGSsgtRl~Vy~~~~~-------~~~~~~--~~~~~k~----~pGLss~~~~~~~a~~~l~~Ll~~--a~~~ip 144 (349)
..|=||+|+|+|.|.+=+..-. -|.+.+ .+...|- .|=++.-.-| .+.++.+++. .+.-|.
T Consensus 4 ~SVGIDIGTSTTQlvfSrl~l~n~a~~~~vPri~I~dkeViYrS~I~fTPl~~~~~ID----~~al~~iv~~eY~~Agi~ 79 (473)
T PF06277_consen 4 LSVGIDIGTSTTQLVFSRLTLENRASGFSVPRIEIVDKEVIYRSPIYFTPLLSQTEID----AEALKEIVEEEYRKAGIT 79 (473)
T ss_pred EEEEEeecCCceeEEEEEeEEEeccCCCccceEEEeccEEEecCCccccCCCCCCccC----HHHHHHHHHHHHHHcCCC
Confidence 4578999999999988776431 132321 1111221 1211111112 2455555553 233333
Q ss_pred CCCcCCceEEEEeehhhcccChhcHHHHHHHHHHHhhccCccc---cCCceEEcCCccchhhHHHHHHHhhccCCCCCCC
Q 018849 145 PAFWADTEIRLMATAGLRLVDVVVQDKILDSCRRVLRVSGFRF---ADDWATVITGSDEGVYAWIVANYALGTLGGDPSE 221 (349)
Q Consensus 145 ~~~~~~tpv~l~ATAGmR~L~~~~~~~il~~vr~~l~~~~f~f---~~~~v~VIsG~eEg~y~WvavNy~lg~l~~~~~~ 221 (349)
++.-..--|.+=+-++ | .+|++++++.+..... .|-. .++-=.||.|.-=|... |. .+.+.
T Consensus 80 p~~I~TGAVIITGETA-r---KeNA~~v~~~Ls~~aG--DFVVATAGPdLEsiiAgkGsGA~~-----~S-----~~~~~ 143 (473)
T PF06277_consen 80 PEDIDTGAVIITGETA-R---KENAREVLHALSGFAG--DFVVATAGPDLESIIAGKGSGAAA-----LS-----KEHHT 143 (473)
T ss_pred HHHCccccEEEecchh-h---hhhHHHHHHHHHHhcC--CEEEEccCCCHHHHHhccCccHHH-----Hh-----hhhCC
Confidence 3333333343333332 3 3799999999988765 3532 01111333333333222 11 12345
Q ss_pred ceeeEeeCCceeEEEeccCCCCCccceeeeEecce
Q 018849 222 TTGIIELGGASVQVTFVSDEPLPQEFSRTLKFGNV 256 (349)
Q Consensus 222 t~gvlDlGGaStQI~f~~~~~~~~~~~~~~~l~~~ 256 (349)
++.-||||||-|-++....... .....++++|+
T Consensus 144 ~V~NiDIGGGTtN~avf~~G~v--~~T~cl~IGGR 176 (473)
T PF06277_consen 144 VVANIDIGGGTTNIAVFDNGEV--IDTACLDIGGR 176 (473)
T ss_pred eEEEEEeCCCceeEEEEECCEE--EEEEEEeeccE
Confidence 6778999999999998765432 12334555554
No 29
>PLN03184 chloroplast Hsp70; Provisional
Probab=92.86 E-value=5.5 Score=43.10 Aligned_cols=18 Identities=33% Similarity=0.647 Sum_probs=15.6
Q ss_pred CceeeEeeCCceeEEEec
Q 018849 221 ETTGIIELGGASVQVTFV 238 (349)
Q Consensus 221 ~t~gvlDlGGaStQI~f~ 238 (349)
..+.|+|||||++.|+..
T Consensus 224 ~~vlV~DlGgGT~DvSi~ 241 (673)
T PLN03184 224 ETILVFDLGGGTFDVSVL 241 (673)
T ss_pred CEEEEEECCCCeEEEEEE
Confidence 567899999999999875
No 30
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=92.50 E-value=7.9 Score=41.32 Aligned_cols=41 Identities=22% Similarity=0.440 Sum_probs=25.5
Q ss_pred ceEEcCCccchhhHHHHHHHhhccCCCCCCCceeeEeeCCceeEEEecc
Q 018849 191 WATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTFVS 239 (349)
Q Consensus 191 ~v~VIsG~eEg~y~WvavNy~lg~l~~~~~~t~gvlDlGGaStQI~f~~ 239 (349)
-+++|+...=|.++ |.+.. ....++.|+|+|||++.++...
T Consensus 171 v~~li~EPtAAAla-----y~~~~---~~~~~vlV~DlGGGT~DvSi~~ 211 (595)
T PRK01433 171 VLRLIAEPTAAAYA-----YGLNK---NQKGCYLVYDLGGGTFDVSILN 211 (595)
T ss_pred EEEEecCcHHHHHH-----Hhccc---CCCCEEEEEECCCCcEEEEEEE
Confidence 35777765444443 33221 1234577999999999998753
No 31
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=92.46 E-value=0.39 Score=44.52 Aligned_cols=62 Identities=13% Similarity=0.134 Sum_probs=36.2
Q ss_pred EEEEEEcCCCceEEEEEEeeCCCCcccccccee-ecCCCCcccCCCcchHHHHHHHHHHHHHHhC
Q 018849 80 YGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSM-RLNPGLSSYAVNPTNAGDSLKDLLDFAKRKV 143 (349)
Q Consensus 80 y~vVIDaGSsgtRl~Vy~~~~~~~~~~~~~~~~-k~~pGLss~~~~~~~a~~~l~~Ll~~a~~~i 143 (349)
|.+.||+|+|++|+.+|+ ..++ .+....... ...+.-.....||+...+.+..+++.+.+..
T Consensus 1 y~lgiDiGTts~K~~l~d-~~g~-iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~ 63 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFD-EDGK-IVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQA 63 (245)
T ss_dssp EEEEEEECSSEEEEEEEE-TTSC-EEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEEEcccceEEEEEe-CCCC-EEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhhc
Confidence 678999999999999998 4433 222111111 1111111223478888777777777766654
No 32
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=92.40 E-value=3.8 Score=44.22 Aligned_cols=40 Identities=15% Similarity=0.433 Sum_probs=25.1
Q ss_pred ceEEcCCccchhhHHHHHHHhhccCCCCCCCceeeEeeCCceeEEEec
Q 018849 191 WATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTFV 238 (349)
Q Consensus 191 ~v~VIsG~eEg~y~WvavNy~lg~l~~~~~~t~gvlDlGGaStQI~f~ 238 (349)
-+++|+...=|.++ |.+. .+....+.|+|+|||++.++..
T Consensus 204 v~~li~EptAAAla-----y~~~---~~~~~~vlV~DlGgGT~DvSv~ 243 (663)
T PTZ00400 204 VLRIINEPTAAALA-----FGMD---KNDGKTIAVYDLGGGTFDISIL 243 (663)
T ss_pred eEEEeCchHHHHHH-----hccc---cCCCcEEEEEeCCCCeEEEEEE
Confidence 35666655444443 3322 1123567899999999999865
No 33
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=91.75 E-value=2.4 Score=41.92 Aligned_cols=103 Identities=18% Similarity=0.186 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhCCCCCcCCceEEEEeehhhcccChhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhhHHHHHH
Q 018849 130 DSLKDLLDFAKRKVPPAFWADTEIRLMATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVAN 209 (349)
Q Consensus 130 ~~l~~Ll~~a~~~ip~~~~~~tpv~l~ATAGmR~L~~~~~~~il~~vr~~l~~~~f~f~~~~v~VIsG~eEg~y~WvavN 209 (349)
+.++.+++.+-...-.......||.+.--.- .+...++.+.+.+-+.+ +++ .+-++. ++ +.+-
T Consensus 74 ~~~e~i~~~~~~~~l~~~~~~~~vll~~~~~---~~~~~r~~l~e~lfE~~---~~~----~v~~~~---~~----~~a~ 136 (393)
T PF00022_consen 74 DALEEIWDYIFSNLLKVDPSDHPVLLTEPPF---NPRSQREKLAEILFEKF---GVP----SVYFIP---SP----LLAL 136 (393)
T ss_dssp HHHHHHHHHHHHTTT-SSGGGSEEEEEESTT-----HHHHHHHHHHHHHTS-----S----EEEEEE---HH----HHHH
T ss_pred cccccccccccccccccccccceeeeecccc---CCchhhhhhhhhhhccc---ccc----eeeeee---cc----cccc
Confidence 4566677765443211223456777654432 23455566665555433 332 244443 22 3334
Q ss_pred HhhccCCCCCCCceeeEeeCCceeEEEeccCCCCCccceeeeEecc
Q 018849 210 YALGTLGGDPSETTGIIELGGASVQVTFVSDEPLPQEFSRTLKFGN 255 (349)
Q Consensus 210 y~lg~l~~~~~~t~gvlDlGGaStQI~f~~~~~~~~~~~~~~~l~~ 255 (349)
|..|. .+..|||+|.++|+|+-..+...-......+.++|
T Consensus 137 ~~~g~------~tglVVD~G~~~t~v~pV~dG~~~~~~~~~~~~GG 176 (393)
T PF00022_consen 137 YASGR------TTGLVVDIGYSSTSVVPVVDGYVLPHSIKRSPIGG 176 (393)
T ss_dssp HHTTB------SSEEEEEESSS-EEEEEEETTEE-GGGBEEES-SH
T ss_pred ccccc------ccccccccceeeeeeeeeeeccccccccccccccH
Confidence 55552 35569999999999987765432223333344444
No 34
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=90.35 E-value=3.3 Score=40.90 Aligned_cols=94 Identities=21% Similarity=0.350 Sum_probs=47.7
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCcCCceEEEEeehhhcccChhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhh
Q 018849 124 NPTNAGDSLKDLLDFAKRKVPPAFWADTEIRLMATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVY 203 (349)
Q Consensus 124 ~~~~a~~~l~~Ll~~a~~~ip~~~~~~tpv~l~ATAGmR~L~~~~~~~il~~vr~~l~~~~f~f~~~~v~VIsG~eEg~y 203 (349)
|.+.+...|..+++.+... .......+.+..-+++ ...++.++.+.+++. |.. .|.+|+ |.+-
T Consensus 70 D~~~~~~~l~~~l~k~~~~---~~~~~p~vvi~vP~~~---T~verrA~~~a~~~a----Ga~----~V~li~---ep~A 132 (326)
T PF06723_consen 70 DYEAAEEMLRYFLKKALGR---RSFFRPRVVICVPSGI---TEVERRALIDAARQA----GAR----KVYLIE---EPIA 132 (326)
T ss_dssp SHHHHHHHHHHHHHHHHTS---S-SS--EEEEEE-SS-----HHHHHHHHHHHHHT----T-S----EEEEEE---HHHH
T ss_pred CHHHHHHHHHHHHHHhccC---CCCCCCeEEEEeCCCC---CHHHHHHHHHHHHHc----CCC----EEEEec---chHH
Confidence 3445555666666666542 2233344555555554 345788888888773 321 366664 4433
Q ss_pred HHHHHHHhhccCCCCCCCceeeEeeCCceeEEEecc
Q 018849 204 AWIVANYALGTLGGDPSETTGIIELGGASVQVTFVS 239 (349)
Q Consensus 204 ~WvavNy~lg~l~~~~~~t~gvlDlGGaStQI~f~~ 239 (349)
+-+|+..-. .++ ...-++|+|||.|+|+..+
T Consensus 133 aAiGaGl~i----~~~-~g~miVDIG~GtTdiavis 163 (326)
T PF06723_consen 133 AAIGAGLDI----FEP-RGSMIVDIGGGTTDIAVIS 163 (326)
T ss_dssp HHHHTT--T----TSS-S-EEEEEE-SS-EEEEEEE
T ss_pred HHhcCCCCC----CCC-CceEEEEECCCeEEEEEEE
Confidence 333332211 111 2345999999999999764
No 35
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=89.94 E-value=2.4 Score=41.60 Aligned_cols=64 Identities=14% Similarity=0.271 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhhccCccccCCceEEcCCccchhhHHHHHHHhhccCCCC-CCCceeeEeeCCceeEEEeccC
Q 018849 170 DKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGD-PSETTGIIELGGASVQVTFVSD 240 (349)
Q Consensus 170 ~~il~~vr~~l~~~~f~f~~~~v~VIsG~eEg~y~WvavNy~lg~l~~~-~~~t~gvlDlGGaStQI~f~~~ 240 (349)
.++++..-++++..|+. +.+|+=+-=|++..+..++. .+... ..+++.+||||..+|++.+..+
T Consensus 135 k~~v~~~~~~~~~aGL~-----~~~vDv~~~Al~r~~~~~~~--~~~~~~~~~~~~lvdiG~~~t~~~i~~~ 199 (340)
T PF11104_consen 135 KEIVESYVELFEEAGLK-----PVAVDVEAFALARLFEFLEP--QLPDEEDAETVALVDIGASSTTVIIFQN 199 (340)
T ss_dssp HHHHHHHHHHHHHTT-E-----EEEEEEHHHHGGGGGHHHHH--TST----T-EEEEEEE-SS-EEEEEEET
T ss_pred HHHHHHHHHHHHHcCCc-----eEEEeehHHHHHHHHHHHHH--hCCcccccceEEEEEecCCeEEEEEEEC
Confidence 45666666667667885 77776555555555444322 12211 2246789999999999988754
No 36
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=89.57 E-value=2.6 Score=39.50 Aligned_cols=109 Identities=24% Similarity=0.220 Sum_probs=58.8
Q ss_pred EEEEEEcCCCceEEEEEEeeCCCCccccccceeecCCCCcccCCCcchHHHHHHHHHHHHHHhCCCCCcCCceEEEEeeh
Q 018849 80 YGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMRLNPGLSSYAVNPTNAGDSLKDLLDFAKRKVPPAFWADTEIRLMATA 159 (349)
Q Consensus 80 y~vVIDaGSsgtRl~Vy~~~~~~~~~~~~~~~~k~~pGLss~~~~~~~a~~~l~~Ll~~a~~~ip~~~~~~tpv~l~ATA 159 (349)
|.+-||+||++++..+|+ + +. .+ ......|+ ..++.+.+.+..+++.+ +.. ...-..+..|.
T Consensus 1 ~~lGIDiGtts~K~vl~d-~-g~-il----~~~~~~~~-----~~~~~~~~~l~~~~~~~----~~~--~~~i~~i~~Tg 62 (248)
T TIGR00241 1 ISLGIDSGSTTTKMVLME-D-GK-VI----GYKWLDTT-----PVIEETARAILEALKEA----GIG--LEPIDKIVATG 62 (248)
T ss_pred CEEEEEcChhheEEEEEc-C-CE-EE----EEEEecCC-----CCHHHHHHHHHHHHHHc----CCC--hhheeEEEEEC
Confidence 346799999999999996 3 22 22 12222222 12333344444444322 111 11234455666
Q ss_pred hhcccChhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhhHHHHHHHhhccCCCCCCCceeeEeeCCceeEEEecc
Q 018849 160 GLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTFVS 239 (349)
Q Consensus 160 GmR~L~~~~~~~il~~vr~~l~~~~f~f~~~~v~VIsG~eEg~y~WvavNy~lg~l~~~~~~t~gvlDlGGaStQI~f~~ 239 (349)
-+|-+= . | .+ . -..|-..--.+++++.+ +.-.+|||||..+.+....
T Consensus 63 ~~~~~v-------~-----------~--~~---~---~~~ei~~~~~g~~~~~~-------~~~~vidiGgqd~k~i~~~ 109 (248)
T TIGR00241 63 YGRHKV-------G-----------F--AD---K---IVTEISCHGKGANYLAP-------EARGVIDIGGQDSKVIKID 109 (248)
T ss_pred CCcccc-------c-----------c--cC---C---ceEEhhHHHHHHHHHCC-------CCCEEEEecCCeeEEEEEC
Confidence 555531 0 0 01 0 12365556677888753 3446999999999888764
No 37
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=89.08 E-value=8.4 Score=37.31 Aligned_cols=19 Identities=21% Similarity=0.525 Sum_probs=15.7
Q ss_pred ceeeEeeCCceeEEEeccC
Q 018849 222 TTGIIELGGASVQVTFVSD 240 (349)
Q Consensus 222 t~gvlDlGGaStQI~f~~~ 240 (349)
+..++|+|||.|+++....
T Consensus 153 ~~lVvDiG~gttdvs~v~~ 171 (335)
T PRK13930 153 GNMVVDIGGGTTEVAVISL 171 (335)
T ss_pred ceEEEEeCCCeEEEEEEEe
Confidence 4569999999999987654
No 38
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=88.28 E-value=22 Score=38.54 Aligned_cols=19 Identities=16% Similarity=0.071 Sum_probs=16.1
Q ss_pred eEEEEEEcCCCceEEEEEE
Q 018849 79 KYGVLLDGGSTGTRIHVFS 97 (349)
Q Consensus 79 ~y~vVIDaGSsgtRl~Vy~ 97 (349)
.+.+-||.|+|.|.+-+++
T Consensus 27 ~~viGIDLGTTnS~vA~~~ 45 (657)
T PTZ00186 27 GDVIGVDLGTTYSCVATMD 45 (657)
T ss_pred ceEEEEEeCcCeEEEEEEe
Confidence 3678999999999998864
No 39
>PTZ00281 actin; Provisional
Probab=87.40 E-value=7.3 Score=38.85 Aligned_cols=35 Identities=9% Similarity=0.015 Sum_probs=23.1
Q ss_pred ceeeEeeCCceeEEEeccCCCCCccceeeeEecce
Q 018849 222 TTGIIELGGASVQVTFVSDEPLPQEFSRTLKFGNV 256 (349)
Q Consensus 222 t~gvlDlGGaStQI~f~~~~~~~~~~~~~~~l~~~ 256 (349)
|..|||+|-++|+|+=.-+...-....+.++++|.
T Consensus 150 tglVVDiG~~~t~v~PV~dG~~~~~~~~~~~~GG~ 184 (376)
T PTZ00281 150 TGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGR 184 (376)
T ss_pred eEEEEECCCceEEEEEEEecccchhheeeccCcHH
Confidence 45699999999999865544333334455666664
No 40
>PTZ00004 actin-2; Provisional
Probab=87.32 E-value=8.4 Score=38.42 Aligned_cols=36 Identities=8% Similarity=0.017 Sum_probs=23.5
Q ss_pred ceeeEeeCCceeEEEeccCCCCCccceeeeEeccee
Q 018849 222 TTGIIELGGASVQVTFVSDEPLPQEFSRTLKFGNVT 257 (349)
Q Consensus 222 t~gvlDlGGaStQI~f~~~~~~~~~~~~~~~l~~~~ 257 (349)
|..|||+|.+.|+|+=..+...-....+.++++|..
T Consensus 150 tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~GG~~ 185 (378)
T PTZ00004 150 TGIVLDSGDGVSHTVPIYEGYSLPHAIHRLDVAGRD 185 (378)
T ss_pred eEEEEECCCCcEEEEEEECCEEeecceeeecccHHH
Confidence 445999999999998765543323344455666543
No 41
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=87.30 E-value=19 Score=35.06 Aligned_cols=32 Identities=19% Similarity=0.496 Sum_probs=23.0
Q ss_pred eeeEeeCCceeEEEeccCCCCCccceeeeEecce
Q 018849 223 TGIIELGGASVQVTFVSDEPLPQEFSRTLKFGNV 256 (349)
Q Consensus 223 ~gvlDlGGaStQI~f~~~~~~~~~~~~~~~l~~~ 256 (349)
..+||+|+++|.+++..+.. ..+.+.+.+++.
T Consensus 190 ~~lvdiG~~~t~l~i~~~g~--~~~~r~i~~G~~ 221 (348)
T TIGR01175 190 AALVDIGATSSTLNLLHPGR--MLFTREVPFGTR 221 (348)
T ss_pred EEEEEECCCcEEEEEEECCe--EEEEEEeechHH
Confidence 67999999999999876442 245566665543
No 42
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=87.29 E-value=7 Score=37.93 Aligned_cols=18 Identities=22% Similarity=0.647 Sum_probs=15.1
Q ss_pred ceeeEeeCCceeEEEecc
Q 018849 222 TTGIIELGGASVQVTFVS 239 (349)
Q Consensus 222 t~gvlDlGGaStQI~f~~ 239 (349)
...++|+|||.|+++...
T Consensus 149 ~~lvvDiGggttdvs~v~ 166 (334)
T PRK13927 149 GSMVVDIGGGTTEVAVIS 166 (334)
T ss_pred eEEEEEeCCCeEEEEEEe
Confidence 356999999999999763
No 43
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.92 E-value=6.1 Score=39.16 Aligned_cols=48 Identities=10% Similarity=0.213 Sum_probs=27.0
Q ss_pred eEEcCCccchhhHHHHHHHhhccCCCCCC-CceeeEeeCCceeEEEeccCC
Q 018849 192 ATVITGSDEGVYAWIVANYALGTLGGDPS-ETTGIIELGGASVQVTFVSDE 241 (349)
Q Consensus 192 v~VIsG~eEg~y~WvavNy~lg~l~~~~~-~t~gvlDlGGaStQI~f~~~~ 241 (349)
+.|++=+.=|.+--+. -+.+.+..... ..+.++|||+.|+++.+.-+.
T Consensus 165 ~~vlDV~~fAl~ra~~--~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~g 213 (354)
T COG4972 165 PKVLDVESFALLRAYR--LLASQFGPEEAAMKVAVFDIGATSSELLVIQDG 213 (354)
T ss_pred ceEEehHHHHHHHHHH--HHHHHhCCchhhhhheeeeecccceEEEEEECC
Confidence 5555555444443333 12223332221 225689999999999987554
No 44
>PTZ00452 actin; Provisional
Probab=86.82 E-value=8.3 Score=38.55 Aligned_cols=105 Identities=10% Similarity=0.103 Sum_probs=53.7
Q ss_pred HHHHHHHHHH-HHhCCCCCcCCceEEEEeehhhcccChhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhhHHHHH
Q 018849 130 DSLKDLLDFA-KRKVPPAFWADTEIRLMATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVA 208 (349)
Q Consensus 130 ~~l~~Ll~~a-~~~ip~~~~~~tpv~l~ATAGmR~L~~~~~~~il~~vr~~l~~~~f~f~~~~v~VIsG~eEg~y~Wvav 208 (349)
+.++.+.+++ .+.+.. .-...||.+- -+.+ .+..+++.+.+.+=+.++-..+ -+. ..+..+-
T Consensus 80 d~~e~iw~~~f~~~l~v-~p~~~pvlit-E~~~--~~~~~Re~l~eilFE~~~vp~~-------~~~---~~~~lsl--- 142 (375)
T PTZ00452 80 DDIEIIWHHAFYNELCM-SPEDQPVFMT-DAPM--NSKFNRERMTQIMFETFNTPCL-------YIS---NEAVLSL--- 142 (375)
T ss_pred HHHHHHHHHHHHhhcCC-CcccCceeee-cCCC--CCHHHHHHHHHHHhhccCCceE-------EEe---chHHHHH---
Confidence 4566677665 222211 1123466653 2222 3456777776665554322122 222 2222222
Q ss_pred HHhhccCCCCCCCceeeEeeCCceeEEEeccCCCCCccceeeeEecceeE
Q 018849 209 NYALGTLGGDPSETTGIIELGGASVQVTFVSDEPLPQEFSRTLKFGNVTY 258 (349)
Q Consensus 209 Ny~lg~l~~~~~~t~gvlDlGGaStQI~f~~~~~~~~~~~~~~~l~~~~~ 258 (349)
|..|+ .+..|||+|-+.|+|+=..+...-.....+++++|...
T Consensus 143 -ya~g~------~tglVVDiG~~~t~v~PV~dG~~l~~~~~r~~~gG~~l 185 (375)
T PTZ00452 143 -YTSGK------TIGLVVDSGEGVTHCVPVFEGHQIPQAITKINLAGRLC 185 (375)
T ss_pred -HHCCC------ceeeeecCCCCcceEEEEECCEEeccceEEeeccchHH
Confidence 33331 34458999999999987665443334555667777533
No 45
>PTZ00466 actin-like protein; Provisional
Probab=86.32 E-value=7.7 Score=38.88 Aligned_cols=104 Identities=8% Similarity=0.080 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhCCCCCcCCceEEEEeehhhcccChhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhhHHHHHH
Q 018849 130 DSLKDLLDFAKRKVPPAFWADTEIRLMATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVAN 209 (349)
Q Consensus 130 ~~l~~Ll~~a~~~ip~~~~~~tpv~l~ATAGmR~L~~~~~~~il~~vr~~l~~~~f~f~~~~v~VIsG~eEg~y~WvavN 209 (349)
+.++.+.+++-+.+... -...||.+ ..+.+ .+..+++.+.+.+-+.+ ++. .+-+. .+++.+-
T Consensus 87 d~~e~iw~~~f~~l~v~-~~~~pvll-te~~~--~~~~~re~~~e~lFE~~---~~p----~~~~~---~~~~lsl---- 148 (380)
T PTZ00466 87 NDMENIWIHVYNSMKIN-SEEHPVLL-TEAPL--NPQKNKEKIAEVFFETF---NVP----ALFIS---IQAILSL---- 148 (380)
T ss_pred HHHHHHHHHHHhhcccC-CccCeEEE-ecCcc--ccHHHHHHHHHHHhccC---CCC----eEEEe---cchHHHH----
Confidence 35556666554333211 12346654 33333 34566777666655433 221 13332 2333333
Q ss_pred HhhccCCCCCCCceeeEeeCCceeEEEeccCCCCCccceeeeEeccee
Q 018849 210 YALGTLGGDPSETTGIIELGGASVQVTFVSDEPLPQEFSRTLKFGNVT 257 (349)
Q Consensus 210 y~lg~l~~~~~~t~gvlDlGGaStQI~f~~~~~~~~~~~~~~~l~~~~ 257 (349)
|..|. .+..|||+|-++|+|+=..+...-......++++|..
T Consensus 149 ~a~g~------~tglVVD~G~~~t~v~PV~~G~~~~~~~~~~~~GG~~ 190 (380)
T PTZ00466 149 YSCGK------TNGTVLDCGDGVCHCVSIYEGYSITNTITRTDVAGRD 190 (380)
T ss_pred HhcCC------ceEEEEeCCCCceEEEEEECCEEeecceeEecCchhH
Confidence 33331 3445999999999997665443223334455666543
No 46
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=84.37 E-value=8.3 Score=40.42 Aligned_cols=119 Identities=18% Similarity=0.230 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHhCCCCCcCCceEEEEeehhhcccChhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhhHHHHH
Q 018849 129 GDSLKDLLDFAKRKVPPAFWADTEIRLMATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVA 208 (349)
Q Consensus 129 ~~~l~~Ll~~a~~~ip~~~~~~tpv~l~ATAGmR~L~~~~~~~il~~vr~~l~~~~f~f~~~~v~VIsG~eEg~y~Wvav 208 (349)
...|..|.+.|...+... .+.+.+---|. ....+++++.++++. .||. .+++|+.. +| .++
T Consensus 117 ~~~l~~l~~~a~~~~~~~---~~~~vitVPa~---~~~~qr~~~~~Aa~~----agl~----~~~li~Ep-~A----aa~ 177 (602)
T PF00012_consen 117 AMILKYLKEMAEKYLGEK---VTDVVITVPAY---FTDEQRQALRDAAEL----AGLN----VLRLINEP-TA----AAL 177 (602)
T ss_dssp HHHHHHHHHHHHHHHTSB---EEEEEEEE-TT-----HHHHHHHHHHHHH----TT-E----EEEEEEHH-HH----HHH
T ss_pred ccchhhhcccchhhcccc---cccceeeechh---hhhhhhhcccccccc----cccc----cceeeccc-cc----ccc
Confidence 345666666666554211 22333333333 223566777777665 3774 36777533 32 244
Q ss_pred HHhhccCCCCCCCceeeEeeCCceeEEEeccCCCCCccceeeeEecceeEEEEEe-ecccccHHHHHHHHHHHh
Q 018849 209 NYALGTLGGDPSETTGIIELGGASVQVTFVSDEPLPQEFSRTLKFGNVTYNLYSH-SFLHFGQNVAFETLRELL 281 (349)
Q Consensus 209 Ny~lg~l~~~~~~t~gvlDlGGaStQI~f~~~~~~~~~~~~~~~l~~~~~~lys~-S~Lg~G~~~ar~~~~~~l 281 (349)
.|.+..-. ...++.|+|+|||++.++...-. +..+.+... .-..+|-+..-..+.+.+
T Consensus 178 ~y~~~~~~--~~~~vlv~D~Gggt~dvs~~~~~-------------~~~~~v~~~~~~~~lGG~~~D~~l~~~~ 236 (602)
T PF00012_consen 178 AYGLERSD--KGKTVLVVDFGGGTFDVSVVEFS-------------NGQFEVLATAGDNNLGGRDFDEALAEYL 236 (602)
T ss_dssp HTTTTSSS--SEEEEEEEEEESSEEEEEEEEEE-------------TTEEEEEEEEEETTCSHHHHHHHHHHHH
T ss_pred cccccccc--cccceeccccccceEeeeehhcc-------------cccccccccccccccccceecceeeccc
Confidence 56544322 23567899999999999876321 123334333 335677765555555444
No 47
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=78.96 E-value=6.9 Score=40.63 Aligned_cols=63 Identities=17% Similarity=0.186 Sum_probs=36.0
Q ss_pred CceEEEEEEcCCCceEEEEEEeeCCCCccccccceee---cCCCCcccCCCcchHHHHHHHHHHHHHHh
Q 018849 77 SVKYGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMR---LNPGLSSYAVNPTNAGDSLKDLLDFAKRK 142 (349)
Q Consensus 77 ~~~y~vVIDaGSsgtRl~Vy~~~~~~~~~~~~~~~~k---~~pGLss~~~~~~~a~~~l~~Ll~~a~~~ 142 (349)
.+.|.+.||+|+|++|..+|..+. ...+........ -.||-+ ..||+..-+.+...+..+.+.
T Consensus 2 ~~~~~lgIDiGTt~~Kavl~d~~~-~~~~~~~~~~~~~~~~~~g~~--e~d~~~~w~~~~~ai~~l~~~ 67 (502)
T COG1070 2 MMKYVLGIDIGTTSVKAVLFDEDG-GEVVATARFENPVSTPQPGWA--EQDPDELWQAILEALRQLLEE 67 (502)
T ss_pred CccEEEEEEcCCCcEEEEEEeCCC-CeEEEEeeccccccCCCCCCc--ccCHHHHHHHHHHHHHHHHHh
Confidence 357889999999999999998763 112221111111 233322 237777655555555544443
No 48
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=77.34 E-value=5.9 Score=38.69 Aligned_cols=56 Identities=25% Similarity=0.234 Sum_probs=39.5
Q ss_pred CceEEEEEEcCCCceEEEEEEeeCCCCccccccceeecCCCCcccCCCc-chHHHHHHHHHHHHH
Q 018849 77 SVKYGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMRLNPGLSSYAVNP-TNAGDSLKDLLDFAK 140 (349)
Q Consensus 77 ~~~y~vVIDaGSsgtRl~Vy~~~~~~~~~~~~~~~~k~~pGLss~~~~~-~~a~~~l~~Ll~~a~ 140 (349)
.+.|.+-||+|+|+||..|+.-+. + .+ -+-.-|=++|...+ +.+.+.+...+..|.
T Consensus 3 ~~~~~lGVDGGGTkt~a~l~~~~g-~-vl------g~g~sGpAN~~~~~~e~A~~ni~~ai~~A~ 59 (301)
T COG2971 3 PMPYFLGVDGGGTKTRAVLADEDG-N-VL------GRGKSGPANIQLVGKEEAVRNIKDAIREAL 59 (301)
T ss_pred CccEEEEEccCCcceEEEEEcCCC-c-EE------EEeccCCceecccchHHHHHHHHHHHHHHH
Confidence 567999999999999999997322 2 22 12223346777777 777778877777665
No 49
>PTZ00280 Actin-related protein 3; Provisional
Probab=76.71 E-value=35 Score=34.43 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=23.5
Q ss_pred ceeeEeeCCceeEEEeccCCCCCccceeeeEeccee
Q 018849 222 TTGIIELGGASVQVTFVSDEPLPQEFSRTLKFGNVT 257 (349)
Q Consensus 222 t~gvlDlGGaStQI~f~~~~~~~~~~~~~~~l~~~~ 257 (349)
+..|||+|.+.|+|+-..+........+.++++|..
T Consensus 161 tglVVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~ 196 (414)
T PTZ00280 161 TGTVIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRD 196 (414)
T ss_pred eEEEEECCCCceEEEEEECCEEcccceEEecCcHHH
Confidence 445999999999998765543333334455666543
No 50
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=76.38 E-value=8.1 Score=40.17 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=19.2
Q ss_pred ceEEEEEEcCCCceEEEEEEee
Q 018849 78 VKYGVLLDGGSTGTRIHVFSYD 99 (349)
Q Consensus 78 ~~y~vVIDaGSsgtRl~Vy~~~ 99 (349)
++|.+.||+|+|++|+.+|..+
T Consensus 2 m~~~lgID~GTts~Ka~l~d~~ 23 (520)
T PRK10939 2 MSYLMALDAGTGSIRAVIFDLN 23 (520)
T ss_pred CcEEEEEecCCCceEEEEECCC
Confidence 3588899999999999999854
No 51
>PF13941 MutL: MutL protein
Probab=75.72 E-value=8.3 Score=39.91 Aligned_cols=74 Identities=22% Similarity=0.333 Sum_probs=43.6
Q ss_pred EEEEcCCCceEEEEEEeeCCCCccccccceeecCCCCcccCCCcchHHHHHHHHHHHHHHhCCCCC-cCCceEEEEeeh-
Q 018849 82 VLLDGGSTGTRIHVFSYDTETNHFDFDLGSMRLNPGLSSYAVNPTNAGDSLKDLLDFAKRKVPPAF-WADTEIRLMATA- 159 (349)
Q Consensus 82 vVIDaGSsgtRl~Vy~~~~~~~~~~~~~~~~k~~pGLss~~~~~~~a~~~l~~Ll~~a~~~ip~~~-~~~tpv~l~ATA- 159 (349)
+++|+|||.|++.+|+...+.+.+. . .-..| .+- .++++...+...++..++..|... .....++.-..|
T Consensus 3 L~~DiGST~Tk~~l~d~~~~~~~~i---g-~a~ap--TTv--~~~Dv~~G~~~A~~~l~~~~~~~~~~~~~~~la~SSAa 74 (457)
T PF13941_consen 3 LVVDIGSTYTKVTLFDLVDGEPRLI---G-QAEAP--TTV--EPGDVTIGLNNALEQLEEQTPASPDDGYDKVLACSSAA 74 (457)
T ss_pred EEEEeCCcceEEeEEeccCCccEEE---E-EEeCC--CCc--CcccHHHHHHHHHHHHHHhcCCCcccCceEEEEECCCC
Confidence 6999999999999998554443332 1 01111 111 235777788888888888777533 333333333322
Q ss_pred -hhcc
Q 018849 160 -GLRL 163 (349)
Q Consensus 160 -GmR~ 163 (349)
|||+
T Consensus 75 GGLrm 79 (457)
T PF13941_consen 75 GGLRM 79 (457)
T ss_pred CcceE
Confidence 6666
No 52
>PRK04123 ribulokinase; Provisional
Probab=75.30 E-value=9.8 Score=39.82 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=18.1
Q ss_pred eEEEEEEcCCCceEEEEEEe
Q 018849 79 KYGVLLDGGSTGTRIHVFSY 98 (349)
Q Consensus 79 ~y~vVIDaGSsgtRl~Vy~~ 98 (349)
.|.+.||+|+|++|+.||..
T Consensus 3 ~~~lgiD~GTts~Ka~l~d~ 22 (548)
T PRK04123 3 AYVIGLDFGTDSVRALLVDC 22 (548)
T ss_pred cEEEEEecCCCceEEEEEEC
Confidence 47789999999999999986
No 53
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=73.52 E-value=11 Score=39.41 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=17.2
Q ss_pred EEEEEEcCCCceEEEEEEe
Q 018849 80 YGVLLDGGSTGTRIHVFSY 98 (349)
Q Consensus 80 y~vVIDaGSsgtRl~Vy~~ 98 (349)
|.+.||+|+|++|..||..
T Consensus 2 ~~lgiD~GTss~Ka~l~d~ 20 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDV 20 (536)
T ss_pred eEEEEecCCCceEEEEEEC
Confidence 6688999999999999984
No 54
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=72.70 E-value=59 Score=35.04 Aligned_cols=90 Identities=17% Similarity=0.266 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhCCCCCcCCceEEEEeehhhcccChhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhhHHHHHH
Q 018849 130 DSLKDLLDFAKRKVPPAFWADTEIRLMATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVAN 209 (349)
Q Consensus 130 ~~l~~Ll~~a~~~ip~~~~~~tpv~l~ATAGmR~L~~~~~~~il~~vr~~l~~~~f~f~~~~v~VIsG~eEg~y~WvavN 209 (349)
..|..|.+.|...... ..+.+.+---|.. ...+++++.++++. .||. -+++|+...=|.+ .
T Consensus 123 ~iL~~lk~~ae~~~g~---~v~~~VItVPa~f---~~~qR~a~~~Aa~~----AGl~----v~~li~EptAAAl-----~ 183 (653)
T PTZ00009 123 MVLQKMKEIAEAYLGK---QVKDAVVTVPAYF---NDSQRQATKDAGTI----AGLN----VLRIINEPTAAAI-----A 183 (653)
T ss_pred HHHHHHHHHHHHHhCC---CcceeEEEeCCCC---CHHHHHHHHHHHHH----cCCc----eeEEecchHHHHH-----H
Confidence 4566667767665421 1233443333333 23566776666665 3664 4678876544333 3
Q ss_pred HhhccCCCCCCCceeeEeeCCceeEEEecc
Q 018849 210 YALGTLGGDPSETTGIIELGGASVQVTFVS 239 (349)
Q Consensus 210 y~lg~l~~~~~~t~gvlDlGGaStQI~f~~ 239 (349)
|.+..-. ....++.++|+|||++.++...
T Consensus 184 y~~~~~~-~~~~~vlv~D~GggT~dvsv~~ 212 (653)
T PTZ00009 184 YGLDKKG-DGEKNVLIFDLGGGTFDVSLLT 212 (653)
T ss_pred HhhhccC-CCCCEEEEEECCCCeEEEEEEE
Confidence 4332211 1135678999999999998753
No 55
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=71.51 E-value=7.8 Score=31.14 Aligned_cols=28 Identities=11% Similarity=0.026 Sum_probs=14.3
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHHhhhhh
Q 018849 36 KPTKSNPSSFAIPIALTATLITLISCYYVFI 66 (349)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (349)
...|++ ...+++.+++++..+|.+|.++
T Consensus 31 ~~~ws~---vv~v~i~~lvaVg~~YL~y~~f 58 (91)
T PF01708_consen 31 GLPWSR---VVEVAIFTLVAVGCLYLAYTWF 58 (91)
T ss_pred CCccee---EeeeeehHHHHHHHHHHHHHHH
Confidence 345766 3233444455555555555543
No 56
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=70.50 E-value=1.5e+02 Score=31.55 Aligned_cols=89 Identities=18% Similarity=0.247 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHhCCCCCcCCceEEEEeehhhcccChhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhhHHHHH
Q 018849 129 GDSLKDLLDFAKRKVPPAFWADTEIRLMATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVA 208 (349)
Q Consensus 129 ~~~l~~Ll~~a~~~ip~~~~~~tpv~l~ATAGmR~L~~~~~~~il~~vr~~l~~~~f~f~~~~v~VIsG~eEg~y~Wvav 208 (349)
...|..|.+.|...++.. .+.+.+---|-. ...++.+..++.+. .||. .+++|+---=|.|+|
T Consensus 102 a~~L~~lk~~ae~~lg~~---v~~~VItVPayF---~d~qR~at~~A~~i----aGl~----vlrlinEPtAAAlay--- 164 (579)
T COG0443 102 AMILTKLKEDAEAYLGEK---VTDAVITVPAYF---NDAQRQATKDAARI----AGLN----VLRLINEPTAAALAY--- 164 (579)
T ss_pred HHHHHHHHHHHHHhhCCC---cceEEEEeCCCC---CHHHHHHHHHHHHH----cCCC----eEEEecchHHHHHHh---
Confidence 456777777777776532 222332222221 12333343333333 4664 467776555444443
Q ss_pred HHhhccCCCCCCCceeeEeeCCceeEEEecc
Q 018849 209 NYALGTLGGDPSETTGIIELGGASVQVTFVS 239 (349)
Q Consensus 209 Ny~lg~l~~~~~~t~gvlDlGGaStQI~f~~ 239 (349)
.+.. ....++.|+|+|||.+-++...
T Consensus 165 --g~~~---~~~~~vlV~DlGGGTfDvSll~ 190 (579)
T COG0443 165 --GLDK---GKEKTVLVYDLGGGTFDVSLLE 190 (579)
T ss_pred --Hhcc---CCCcEEEEEEcCCCCEEEEEEE
Confidence 3221 1235789999999999888754
No 57
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=69.94 E-value=35 Score=33.33 Aligned_cols=110 Identities=19% Similarity=0.198 Sum_probs=58.4
Q ss_pred eEEEEEEcCCCceEEEEEEeeCCCCccccccceeecCCCCcccCCCc-chHHHHHHHHHHHHHHhCCCCCcCCceEEEEe
Q 018849 79 KYGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMRLNPGLSSYAVNP-TNAGDSLKDLLDFAKRKVPPAFWADTEIRLMA 157 (349)
Q Consensus 79 ~y~vVIDaGSsgtRl~Vy~~~~~~~~~~~~~~~~k~~pGLss~~~~~-~~a~~~l~~Ll~~a~~~ip~~~~~~tpv~l~A 157 (349)
.|.+=||+||++|.+.|++ + +. .+. ...+.- ..+| +.+.+.|+.+++.+... ...--++.+
T Consensus 32 m~~~GIDiGStt~K~Vlld-~-~~-i~~----~~~~~t-----g~~~~~~a~~~l~~~l~~~g~~------~~~v~~~~~ 93 (293)
T TIGR03192 32 IITCGIDVGSVSSQAVLVC-D-GE-LYG----YNSMRT-----GNNSPDSAKNALQGIMDKIGMK------LEDINYVVG 93 (293)
T ss_pred cEEEEEEeCchhEEEEEEe-C-CE-EEE----EEeecC-----CCCHHHHHHHHHHHHHHHcCCc------ccceEEEEE
Confidence 4778999999999999986 3 21 111 111111 1233 33445666666544311 112334667
Q ss_pred ehhhcccChhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhhHHHHHHHhhccCCCCCCCceeeEeeCCceeEEEe
Q 018849 158 TAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTF 237 (349)
Q Consensus 158 TAGmR~L~~~~~~~il~~vr~~l~~~~f~f~~~~v~VIsG~eEg~y~WvavNy~lg~l~~~~~~t~gvlDlGGaStQI~f 237 (349)
|.-=|.+= +| .+ ++ ..|=.---.+++|+.+ .+.-.||||||=-+-+.+
T Consensus 94 TGyGr~~~------------------~~--a~---~~---v~EItaha~Ga~~~~p------p~v~tIIDIGGQDsK~I~ 141 (293)
T TIGR03192 94 TGYGRVNV------------------PF--AH---KA---ITEIACHARGANYMGG------NAVRTILDMGGQDCKAIH 141 (293)
T ss_pred ECcchhhc------------------ch--hh---cc---eeeHHHHHHHHHHhcC------CCCCEEEEeCCCceEEEE
Confidence 87545420 11 11 11 1243344566777642 234579999997776665
Q ss_pred c
Q 018849 238 V 238 (349)
Q Consensus 238 ~ 238 (349)
.
T Consensus 142 ~ 142 (293)
T TIGR03192 142 C 142 (293)
T ss_pred E
Confidence 4
No 58
>PRK10331 L-fuculokinase; Provisional
Probab=69.65 E-value=15 Score=37.61 Aligned_cols=58 Identities=12% Similarity=-0.027 Sum_probs=33.6
Q ss_pred EEEEEEcCCCceEEEEEEeeCCCCccccccce--e---ecCCCCcccCCCcchHHHHHHHHHHHHHH
Q 018849 80 YGVLLDGGSTGTRIHVFSYDTETNHFDFDLGS--M---RLNPGLSSYAVNPTNAGDSLKDLLDFAKR 141 (349)
Q Consensus 80 y~vVIDaGSsgtRl~Vy~~~~~~~~~~~~~~~--~---k~~pGLss~~~~~~~a~~~l~~Ll~~a~~ 141 (349)
|.+.||+|+|++|..+|.-+. + .+...... . ...||- ...||+...+.+..+++.+.+
T Consensus 3 ~~lgID~GTt~~Ka~l~d~~G-~-~~~~~~~~~~~~~~~~~~g~--~eqd~~~~w~~~~~~~~~~~~ 65 (470)
T PRK10331 3 VILVLDCGATNVRAIAVDRQG-K-IVARASTPNASDIAAENSDW--HQWSLDAILQRFADCCRQINS 65 (470)
T ss_pred eEEEEecCCCceEEEEEcCCC-c-EEEEEecccccccCCCCCCC--cccCHHHHHHHHHHHHHHHHH
Confidence 778999999999999997543 2 22110011 1 112332 234777766666666665543
No 59
>PLN02295 glycerol kinase
Probab=68.88 E-value=15 Score=38.23 Aligned_cols=59 Identities=19% Similarity=0.183 Sum_probs=33.9
Q ss_pred EEEEEEcCCCceEEEEEEeeCCCCcccc--ccce-eecCCCCcccCCCcchHHHHHHHHHHHHHHh
Q 018849 80 YGVLLDGGSTGTRIHVFSYDTETNHFDF--DLGS-MRLNPGLSSYAVNPTNAGDSLKDLLDFAKRK 142 (349)
Q Consensus 80 y~vVIDaGSsgtRl~Vy~~~~~~~~~~~--~~~~-~k~~pGLss~~~~~~~a~~~l~~Ll~~a~~~ 142 (349)
|.+.||+|+|++|..||.-+ ++ .+.. .... ..-.||.. ..||+...+.+..+++.+.+.
T Consensus 1 ~vlgID~GTts~Ka~l~d~~-G~-~~~~~~~~~~~~~~~~G~~--Eqdp~~~w~~~~~~i~~~~~~ 62 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDRD-AR-PVASHQVEFTQIYPQAGWV--EHDPMEILESVLTCIAKALEK 62 (512)
T ss_pred CEEEEecCCCceEEEEECCC-CC-EEEEEeecccccCCCCCcE--eeCHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999743 22 2210 0011 11134543 347877766666666655443
No 60
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=67.79 E-value=18 Score=37.42 Aligned_cols=59 Identities=20% Similarity=0.241 Sum_probs=33.8
Q ss_pred eEEEEEEcCCCceEEEEEEeeCCCCccccccce---eecCCCCcccCCCcchHHHHHHHHHHHHHH
Q 018849 79 KYGVLLDGGSTGTRIHVFSYDTETNHFDFDLGS---MRLNPGLSSYAVNPTNAGDSLKDLLDFAKR 141 (349)
Q Consensus 79 ~y~vVIDaGSsgtRl~Vy~~~~~~~~~~~~~~~---~k~~pGLss~~~~~~~a~~~l~~Ll~~a~~ 141 (349)
.|.+.||+|+|++|..||..+. + .+...... ....||-. ..||+..-+.+..+++.+.+
T Consensus 2 ~~~lgiDiGTts~Ka~l~d~~G-~-~v~~~~~~~~~~~~~~g~~--eqd~~~~~~~~~~~l~~~~~ 63 (504)
T PTZ00294 2 KYIGSIDQGTTSTRFIIFDEKG-N-VVSSHQIPHEQITPHPGWL--EHDPEEILRNVYKCMNEAIK 63 (504)
T ss_pred cEEEEEecCCCceEEEEECCCC-C-EEEEEEEeecccCCCCCeE--eeCHHHHHHHHHHHHHHHHH
Confidence 4778999999999999998542 2 22110111 11234432 34677666666555555543
No 61
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=67.65 E-value=15 Score=37.61 Aligned_cols=58 Identities=14% Similarity=0.018 Sum_probs=34.4
Q ss_pred EEEEEEcCCCceEEEEEEeeCCCCcccccc--cee---ecCCCCcccCCCcchHHHHHHHHHHHHHH
Q 018849 80 YGVLLDGGSTGTRIHVFSYDTETNHFDFDL--GSM---RLNPGLSSYAVNPTNAGDSLKDLLDFAKR 141 (349)
Q Consensus 80 y~vVIDaGSsgtRl~Vy~~~~~~~~~~~~~--~~~---k~~pGLss~~~~~~~a~~~l~~Ll~~a~~ 141 (349)
|.+.||+|+|++|+.||..+ ++ .+.... ... ...||-. ..||+...+.+..+++.+..
T Consensus 2 ~ilgiD~GTss~K~~l~d~~-g~-~va~~~~~~~~~~~~~~~g~~--eqd~~~~w~~~~~~~~~l~~ 64 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQ-GK-IVASASTPNATKQAIENNDYH--IWDLEAIWQKLADCCQQINS 64 (465)
T ss_pred eEEEEecCCCcEEEEEEcCC-CC-EEEEEecccccCCCCCCCCce--eeCHHHHHHHHHHHHHHHHh
Confidence 56789999999999999853 22 221000 011 1234432 33787777666666666553
No 62
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=67.61 E-value=7.5 Score=36.58 Aligned_cols=72 Identities=18% Similarity=0.165 Sum_probs=39.0
Q ss_pred EEEcCCCceEEEEEEeeCCCCccccccceeecCCCCcccC-CCcchHHHHHHHHHHHHHHhCCCCCcCCceEEEEeehhh
Q 018849 83 LLDGGSTGTRIHVFSYDTETNHFDFDLGSMRLNPGLSSYA-VNPTNAGDSLKDLLDFAKRKVPPAFWADTEIRLMATAGL 161 (349)
Q Consensus 83 VIDaGSsgtRl~Vy~~~~~~~~~~~~~~~~k~~pGLss~~-~~~~~a~~~l~~Ll~~a~~~ip~~~~~~tpv~l~ATAGm 161 (349)
=||+|+|.||+.+++-.. . .+. ..+..+ +++. .+.+.+.+.|..+++.+.+..+........+ .++.+|+
T Consensus 2 GIDgGgTkt~~vl~d~~g-~-il~----~~~~~~--~n~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~-~~g~aG~ 72 (271)
T PF01869_consen 2 GIDGGGTKTKAVLVDENG-N-ILG----RGKGGG--ANYNSVGFEEAMENIKEAIEEALSQAGLSPDDIAAI-CIGAAGY 72 (271)
T ss_dssp EEEECSSEEEEEEEETTS-E-EEE----EEEES---TTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCEE-EEEEEEE
T ss_pred EEeeChheeeeEEEeCCC-C-EEE----EEEeCC--CCCCCCCcchhhhHHHHHHHHHHHHcCCCcccccee-eeeEeee
Confidence 499999999999987432 1 221 112222 2222 2345566677777777766655443222333 3455554
Q ss_pred cc
Q 018849 162 RL 163 (349)
Q Consensus 162 R~ 163 (349)
=.
T Consensus 73 ~~ 74 (271)
T PF01869_consen 73 GR 74 (271)
T ss_dssp EE
T ss_pred cC
Confidence 44
No 63
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=65.15 E-value=37 Score=34.38 Aligned_cols=117 Identities=22% Similarity=0.194 Sum_probs=63.4
Q ss_pred CCCceEEEEEEcCCCceEEEEEEeeCCCCccccccceeecCCCCcccCCCcchHHHHHHHHHHHHHHhCCCCCcCCceEE
Q 018849 75 PSSVKYGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMRLNPGLSSYAVNPTNAGDSLKDLLDFAKRKVPPAFWADTEIR 154 (349)
Q Consensus 75 ~~~~~y~vVIDaGSsgtRl~Vy~~~~~~~~~~~~~~~~k~~pGLss~~~~~~~a~~~l~~Ll~~a~~~ip~~~~~~tpv~ 154 (349)
...-.+.+=||+|||+|.+.+.+-. . .+. .......+|. |. +.+.++..++.+.... ..-..
T Consensus 131 ~~~~~~~LGID~GSTtTK~VLm~d~--~-~I~--~~~~~~t~g~------p~-~~~~l~~~le~l~~~~------~~I~~ 192 (396)
T COG1924 131 EYQGMYTLGIDSGSTTTKAVLMEDG--K-EIL--YGFYVSTKGR------PI-AEKALKEALEELGEKL------EEILG 192 (396)
T ss_pred hhcCcEEEEEecCCcceeEEEEeCC--C-eEE--EEEEEcCCCC------hh-HHHHHHHHHHHcccCh------heeee
Confidence 3344566799999999999997632 2 221 1233444443 22 4455555555544321 22344
Q ss_pred EEeehhhcccChhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhhHHHHHHHhhccCCCCCCCceeeEeeCCceeE
Q 018849 155 LMATAGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQ 234 (349)
Q Consensus 155 l~ATAGmR~L~~~~~~~il~~vr~~l~~~~f~f~~~~v~VIsG~eEg~y~WvavNy~lg~l~~~~~~t~gvlDlGGaStQ 234 (349)
+.+|.==|.+ + ...+ +.+ -+..|=.--..|+.|+.. +.-.||||||==+-
T Consensus 193 ~~~TGYGR~~--------v---~~~~---~aD---------~~~~Ei~ah~kgA~~f~p-------~~dtIiDIGGQD~K 242 (396)
T COG1924 193 LGVTGYGRNL--------V---GAAL---GAD---------KVVVEISAHAKGARYFAP-------DVDTVIDIGGQDSK 242 (396)
T ss_pred eeeecccHHH--------h---hhhh---cCC---------cceeeeehhHHHHHHhCC-------CCcEEEEecCccee
Confidence 4555532332 1 1111 110 144565566788888852 23389999997666
Q ss_pred EEecc
Q 018849 235 VTFVS 239 (349)
Q Consensus 235 I~f~~ 239 (349)
+.-..
T Consensus 243 ~i~i~ 247 (396)
T COG1924 243 VIKLE 247 (396)
T ss_pred EEEEe
Confidence 65443
No 64
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=63.58 E-value=20 Score=31.91 Aligned_cols=60 Identities=20% Similarity=0.228 Sum_probs=40.1
Q ss_pred EEEEcCCCceEEEEEEeeC-CCCccccccceeec-CCCCcc-cCCCcchHHHHHHHHHHHHHHhCC
Q 018849 82 VLLDGGSTGTRIHVFSYDT-ETNHFDFDLGSMRL-NPGLSS-YAVNPTNAGDSLKDLLDFAKRKVP 144 (349)
Q Consensus 82 vVIDaGSsgtRl~Vy~~~~-~~~~~~~~~~~~k~-~pGLss-~~~~~~~a~~~l~~Ll~~a~~~ip 144 (349)
+.||+||+.+++.+-+... +...+. ..... ..|+.. --.|.+.+.+.++.+++.+++..+
T Consensus 2 ~~lDIGs~~ik~vv~~~~~~~~~~i~---g~~~~~s~gi~~G~I~d~~~~~~~I~~ai~~ae~~~~ 64 (187)
T smart00842 2 VGLDIGTSKIKALVAEVDEDGEINVI---GVGEVPSRGIRKGVIVDIEAAARAIREAVEEAERMAG 64 (187)
T ss_pred EEEEeccceEEEEEEEEcCCCCEEEE---EEEEecCCCccCcEEECHHHHHHHHHHHHHHHHHHhC
Confidence 5899999999999998764 332221 11111 123332 123788899999999999987754
No 65
>PRK11678 putative chaperone; Provisional
Probab=63.35 E-value=1.3e+02 Score=31.08 Aligned_cols=125 Identities=13% Similarity=0.150 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHhCCCCCcCCceEEEEeehhhccc--ChhcHHH---HHHHHHHHhhccCccccCCceEEcCCccchhh
Q 018849 129 GDSLKDLLDFAKRKVPPAFWADTEIRLMATAGLRLV--DVVVQDK---ILDSCRRVLRVSGFRFADDWATVITGSDEGVY 203 (349)
Q Consensus 129 ~~~l~~Ll~~a~~~ip~~~~~~tpv~l~ATAGmR~L--~~~~~~~---il~~vr~~l~~~~f~f~~~~v~VIsG~eEg~y 203 (349)
...|..|.+.|+..+... .+.+.+---+..... +..++.+ +.++++. .||. .+++|+.-.=|.+
T Consensus 131 a~iL~~lk~~ae~~~g~~---v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~----AG~~----~v~li~EPtAAAl 199 (450)
T PRK11678 131 CAMMLHIKQQAEAQLQAA---ITQAVIGRPVNFQGLGGEEANRQAEGILERAAKR----AGFK----DVEFQFEPVAAGL 199 (450)
T ss_pred HHHHHHHHHHHHHHhCCC---CCcEEEEECCccccCCcchhHHHHHHHHHHHHHH----cCCC----EEEEEcCHHHHHH
Confidence 345566666666654211 233444444433311 1122222 2333333 4774 5788886555555
Q ss_pred HHHHHHHhhccCCCCCCCceeeEeeCCceeEEEeccCCCCCccceeeeEecceeEEEEEeecccccHHHHHHHHH
Q 018849 204 AWIVANYALGTLGGDPSETTGIIELGGASVQVTFVSDEPLPQEFSRTLKFGNVTYNLYSHSFLHFGQNVAFETLR 278 (349)
Q Consensus 204 ~WvavNy~lg~l~~~~~~t~gvlDlGGaStQI~f~~~~~~~~~~~~~~~l~~~~~~lys~S~Lg~G~~~ar~~~~ 278 (349)
+| ... + +..+++.|+|+|||.+.++...-.+. . ........+|.+++-..+|-+..=.++.
T Consensus 200 ~y-----~~~-~--~~~~~vlV~D~GGGT~D~Svv~~~~~---~---~~~~~r~~~vla~~G~~lGG~DfD~~L~ 260 (450)
T PRK11678 200 DF-----EAT-L--TEEKRVLVVDIGGGTTDCSMLLMGPS---W---RGRADRSASLLGHSGQRIGGNDLDIALA 260 (450)
T ss_pred Hh-----ccc-c--CCCCeEEEEEeCCCeEEEEEEEecCc---c---cccCCcceeEEecCCCCCChHHHHHHHH
Confidence 44 111 1 12356889999999999987643211 0 0011234578888877788876655553
No 66
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=60.48 E-value=9.3 Score=31.71 Aligned_cols=61 Identities=15% Similarity=0.121 Sum_probs=29.9
Q ss_pred EEEEEcCCCceEEEEEEeeCCCCccccccceeecCCCCcc-cCCCcchHHHHHHHHHHHHHHh
Q 018849 81 GVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMRLNPGLSS-YAVNPTNAGDSLKDLLDFAKRK 142 (349)
Q Consensus 81 ~vVIDaGSsgtRl~Vy~~~~~~~~~~~~~~~~k~~pGLss-~~~~~~~a~~~l~~Ll~~a~~~ 142 (349)
.++||+||+.|++.||+..... .+..-..-..-..|+.. ...|.+++.+.|+..++.|++.
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~-~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~a~~~AE~~ 62 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDG-YIRVLGVGEVPSKGIKGGHITDIEDISKAIKIAIEEAERL 62 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEE-EEEEES----------HHHHH--HHHHHHHT--HHHHHHH
T ss_pred CEEEEcCCCcEEEEEEEeCCCC-cEEEEEEecccccccCCCEEEEHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999863311 11100000111133332 2236778888888888877765
No 67
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=58.55 E-value=28 Score=35.98 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=16.8
Q ss_pred EEEEEEcCCCceEEEEEEe
Q 018849 80 YGVLLDGGSTGTRIHVFSY 98 (349)
Q Consensus 80 y~vVIDaGSsgtRl~Vy~~ 98 (349)
|.+.||+|+|++|+.||.-
T Consensus 1 ~~lgiDiGtt~~K~~l~d~ 19 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEE 19 (505)
T ss_pred CEEEEeccccceEEEEEcC
Confidence 4678999999999999974
No 68
>PRK15027 xylulokinase; Provisional
Probab=58.10 E-value=30 Score=35.57 Aligned_cols=58 Identities=10% Similarity=0.069 Sum_probs=33.5
Q ss_pred EEEEEcCCCceEEEEEEeeCCCCccccc--cce-eecCCCCcccCCCcchHHHHHHHHHHHHHHh
Q 018849 81 GVLLDGGSTGTRIHVFSYDTETNHFDFD--LGS-MRLNPGLSSYAVNPTNAGDSLKDLLDFAKRK 142 (349)
Q Consensus 81 ~vVIDaGSsgtRl~Vy~~~~~~~~~~~~--~~~-~k~~pGLss~~~~~~~a~~~l~~Ll~~a~~~ 142 (349)
.+.||+|++++|..+|.-+ ++ .+... ... ....|| ....||+...+.+..+++.+.+.
T Consensus 2 ~lgID~GTts~Ka~l~d~~-G~-vva~~~~~~~~~~~~~g--~~eqd~~~~w~~~~~~~~~l~~~ 62 (484)
T PRK15027 2 YIGIDLGTSGVKVILLNEQ-GE-VVASQTEKLTVSRPHPL--WSEQDPEQWWQATDRAMKALGDQ 62 (484)
T ss_pred EEEEEecccceEEEEEcCC-CC-EEEEEeecccccCCCCC--ccccCHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999732 32 22100 011 111233 23457777766776666665543
No 69
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=58.09 E-value=21 Score=37.19 Aligned_cols=61 Identities=25% Similarity=0.292 Sum_probs=38.9
Q ss_pred ceEEEEEEcCCCceEEEEEEeeCCCCccccccceee--cCCCCcccCCCcchHHHHHHHHHHHHHH
Q 018849 78 VKYGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMR--LNPGLSSYAVNPTNAGDSLKDLLDFAKR 141 (349)
Q Consensus 78 ~~y~vVIDaGSsgtRl~Vy~~~~~~~~~~~~~~~~k--~~pGLss~~~~~~~a~~~l~~Ll~~a~~ 141 (349)
..|.+.||.|+|++|..||.-+.+.-... +....+ -+||-. ..||..+.+.....+..|..
T Consensus 4 ~~yIlAiDqGTTssRaivfd~~g~iva~~-q~e~~Q~yP~~GWV--EhDp~eIw~~~~~~l~~a~~ 66 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDEDGNIVAIA-QREFTQIYPQPGWV--EHDPLEIWASVRSVLKEALA 66 (499)
T ss_pred ccEEEEEecCCcceeEEEECCCCCchhhh-hhhhhhhCCCCCcc--ccCHHHHHHHHHHHHHHHHH
Confidence 58999999999999999997553211111 111112 246654 45898887777766666533
No 70
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=57.96 E-value=14 Score=37.77 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=18.3
Q ss_pred eEEEEEEcCCCceEEEEEEeeCC
Q 018849 79 KYGVLLDGGSTGTRIHVFSYDTE 101 (349)
Q Consensus 79 ~y~vVIDaGSsgtRl~Vy~~~~~ 101 (349)
+|++.||+|+|+...++++...+
T Consensus 1 ~~GiAvDiGTTti~~~L~dl~~G 23 (412)
T PF14574_consen 1 NYGIAVDIGTTTIAAYLVDLETG 23 (412)
T ss_dssp -EEEEEEE-SSEEEEEEEETTT-
T ss_pred CEEEEEEcchhheeeEEEECCCC
Confidence 59999999999999999887653
No 71
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=57.67 E-value=27 Score=35.96 Aligned_cols=58 Identities=22% Similarity=0.300 Sum_probs=33.0
Q ss_pred EEEEEEcCCCceEEEEEEeeCCCCccccccceee---cCCCCcccCCCcchHHHHHHHHHHHHHH
Q 018849 80 YGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMR---LNPGLSSYAVNPTNAGDSLKDLLDFAKR 141 (349)
Q Consensus 80 y~vVIDaGSsgtRl~Vy~~~~~~~~~~~~~~~~k---~~pGLss~~~~~~~a~~~l~~Ll~~a~~ 141 (349)
|.+.||+|+|++|+.+|..+ ++ .+........ ..+|.. ..+++...+.+..+++.+.+
T Consensus 2 ~~lgiDiGtt~iKa~l~d~~-g~-~l~~~~~~~~~~~~~~g~~--e~d~~~~~~~i~~~i~~~~~ 62 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFDKD-GN-IVAIHQKEFTQIFPKPGWV--EHDPMEIWESVLSCIAEALA 62 (493)
T ss_pred eEEEEecCCCceEEEEECCC-CC-EEEEEeeeccccCCCCCcE--eeCHHHHHHHHHHHHHHHHH
Confidence 67889999999999999743 22 2211000011 123322 23677766666666665543
No 72
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=55.32 E-value=1e+02 Score=30.39 Aligned_cols=46 Identities=9% Similarity=0.185 Sum_probs=28.2
Q ss_pred CceeeEeeCCceeEEEeccCCCCCccceeeeEecceeEEEEEeecccccHHHHHHHHHHHh
Q 018849 221 ETTGIIELGGASVQVTFVSDEPLPQEFSRTLKFGNVTYNLYSHSFLHFGQNVAFETLRELL 281 (349)
Q Consensus 221 ~t~gvlDlGGaStQI~f~~~~~~~~~~~~~~~l~~~~~~lys~S~Lg~G~~~ar~~~~~~l 281 (349)
...++||+||+.|.++....-. -..=.+.|+ -.|...+.+.+.+.+
T Consensus 185 ~~ilvIDIG~~TtD~~v~~~~~--------------~~~~~s~s~-~~G~~~~~~~I~~~i 230 (344)
T PRK13917 185 GKVSVIDFGSGTTDLDTIQNLK--------------RVEEESFVI-PKGTIDVYKRIASHI 230 (344)
T ss_pred CcEEEEEcCCCcEEEEEEeCcE--------------Ecccccccc-cchHHHHHHHHHHHH
Confidence 3578999999999998653211 001112222 377777777776665
No 73
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=55.28 E-value=1e+02 Score=30.72 Aligned_cols=92 Identities=17% Similarity=0.222 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhCC-CCCcCCceEEEEeeh-hhcccChhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhhHHHH
Q 018849 130 DSLKDLLDFAKRKVP-PAFWADTEIRLMATA-GLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIV 207 (349)
Q Consensus 130 ~~l~~Ll~~a~~~ip-~~~~~~tpv~l~ATA-GmR~L~~~~~~~il~~vr~~l~~~~f~f~~~~v~VIsG~eEg~y~Wva 207 (349)
+....++.++-+.+- .......|..+.++. |.- +-.+.++.++.++.-.+ .|-+| ||..-+-++
T Consensus 79 ~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T---~VErrAi~ea~~~aGa~--------~V~li---eEp~aAAIG 144 (342)
T COG1077 79 EVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGIT---DVERRAIKEAAESAGAR--------EVYLI---EEPMAAAIG 144 (342)
T ss_pred HHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCcc---HHHHHHHHHHHHhccCc--------eEEEe---ccHHHHHhc
Confidence 345555555544332 222123454444444 432 34677777777764321 24444 466555555
Q ss_pred HHHhhccCCCCCCCceeeEeeCCceeEEEeccC
Q 018849 208 ANYALGTLGGDPSETTGIIELGGASVQVTFVSD 240 (349)
Q Consensus 208 vNy~lg~l~~~~~~t~gvlDlGGaStQI~f~~~ 240 (349)
+.-... .|. -.-++|||||.|+|+..+-
T Consensus 145 aglpi~----ep~-G~mvvDIGgGTTevaVISl 172 (342)
T COG1077 145 AGLPIM----EPT-GSMVVDIGGGTTEVAVISL 172 (342)
T ss_pred CCCccc----CCC-CCEEEEeCCCceeEEEEEe
Confidence 543322 121 1348999999999998654
No 74
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=53.45 E-value=27 Score=34.09 Aligned_cols=91 Identities=19% Similarity=0.267 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhhccCccccCCceEEcCCccchhhHHHHHHHhhccCCCC-CCCceeeEeeCCceeEEEeccCCCCCccce
Q 018849 170 DKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGD-PSETTGIIELGGASVQVTFVSDEPLPQEFS 248 (349)
Q Consensus 170 ~~il~~vr~~l~~~~f~f~~~~v~VIsG~eEg~y~WvavNy~lg~l~~~-~~~t~gvlDlGGaStQI~f~~~~~~~~~~~ 248 (349)
+.|-+.+.+.+ + +.|--|--|+--+-.++ |... ......|+|||||||--++...+ ...
T Consensus 98 ~~iA~~l~~~l---g-------v~V~igGvEAemAi~GA------LTTPGt~~PlaIlDmG~GSTDAsii~~~----g~v 157 (332)
T PF08841_consen 98 QMIADELEEEL---G-------VPVEIGGVEAEMAILGA------LTTPGTDKPLAILDMGGGSTDASIINRD----GEV 157 (332)
T ss_dssp HHHHHHHHHHH---T-------SEEEEECEHHHHHHHHH------TTSTT--SSEEEEEE-SSEEEEEEE-TT----S-E
T ss_pred HHHHHHHHHHH---C-------CceEEccccHHHHHhcc------cCCCCCCCCeEEEecCCCcccHHHhCCC----CcE
Confidence 45666777765 2 55555666766555443 3321 12456799999999997776433 223
Q ss_pred eeeEec--ceeEEEEEeecccccHHHHHHHHHHH
Q 018849 249 RTLKFG--NVTYNLYSHSFLHFGQNVAFETLREL 280 (349)
Q Consensus 249 ~~~~l~--~~~~~lys~S~Lg~G~~~ar~~~~~~ 280 (349)
..+++. |...++.-.|=||+.--.--+.+.++
T Consensus 158 ~~iHlAGAG~mVTmlI~sELGl~d~~lAE~IKky 191 (332)
T PF08841_consen 158 TAIHLAGAGNMVTMLINSELGLEDRELAEDIKKY 191 (332)
T ss_dssp EEEEEE-SHHHHHHHHHHHCT-S-HHHHHHHHHS
T ss_pred EEEEecCCchhhHHHHHHhhCCCCHHHHHHhhhc
Confidence 334443 34555666677777654444555443
No 75
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=53.43 E-value=83 Score=30.52 Aligned_cols=18 Identities=22% Similarity=0.647 Sum_probs=15.4
Q ss_pred ceeeEeeCCceeEEEecc
Q 018849 222 TTGIIELGGASVQVTFVS 239 (349)
Q Consensus 222 t~gvlDlGGaStQI~f~~ 239 (349)
+..++|+|||.|+++...
T Consensus 151 ~~lVvDiG~gttdvs~v~ 168 (333)
T TIGR00904 151 GSMVVDIGGGTTEVAVIS 168 (333)
T ss_pred eEEEEEcCCCeEEEEEEE
Confidence 456999999999999874
No 76
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=52.75 E-value=1.6e+02 Score=29.69 Aligned_cols=141 Identities=16% Similarity=0.166 Sum_probs=68.9
Q ss_pred EEEEEEcCCCceEEEEEEeeC-------CCCcccc--ccceeec----CCCCcccCCCcchHHHHHHHHHH--HHHHhCC
Q 018849 80 YGVLLDGGSTGTRIHVFSYDT-------ETNHFDF--DLGSMRL----NPGLSSYAVNPTNAGDSLKDLLD--FAKRKVP 144 (349)
Q Consensus 80 y~vVIDaGSsgtRl~Vy~~~~-------~~~~~~~--~~~~~k~----~pGLss~~~~~~~a~~~l~~Ll~--~a~~~ip 144 (349)
..|=||+|.|.|.+..-+..- .-|.+++ ...+.+. .|=.+. ..--...++.++. +.+.-|.
T Consensus 6 lSVGIDiGTsTTQvifS~lel~Nmas~~~VPri~ii~kdi~~rS~i~FTPv~~q----~~id~~alk~~v~eeY~~AGi~ 81 (473)
T COG4819 6 LSVGIDIGTSTTQVIFSKLELVNMASVSQVPRIEIIKKDISWRSPIFFTPVDKQ----GGIDEAALKKLVLEEYQAAGIA 81 (473)
T ss_pred eeeeeeccCceeeeeeeeeEEeecccccccceEEEEecceeeecceeeeeeccc----CCccHHHHHHHHHHHHHHcCCC
Confidence 357899999999987655543 1132221 0011110 111111 1111234555543 3444444
Q ss_pred CCCcCCce-EEEEeehhhcccChhcHHHHHHHHHHHhhccCccc---cCCceEEcCCccchhhHHHHHHHhhccCCCCCC
Q 018849 145 PAFWADTE-IRLMATAGLRLVDVVVQDKILDSCRRVLRVSGFRF---ADDWATVITGSDEGVYAWIVANYALGTLGGDPS 220 (349)
Q Consensus 145 ~~~~~~tp-v~l~ATAGmR~L~~~~~~~il~~vr~~l~~~~f~f---~~~~v~VIsG~eEg~y~WvavNy~lg~l~~~~~ 220 (349)
++....-. |.-.-||-- .|+..+++++...+. .|-. .++-=.||-|.--|.-.+ .. ..
T Consensus 82 pesi~sGAvIITGEtArk-----~NA~~vl~alSg~aG--DFVVAtAGPdLESiIAGkGaGA~t~----------Se-qr 143 (473)
T COG4819 82 PESIDSGAVIITGETARK-----RNARPVLMALSGSAG--DFVVATAGPDLESIIAGKGAGAQTL----------SE-QR 143 (473)
T ss_pred hhccccccEEEecccccc-----ccchHHHHHhhhccc--ceEEEecCCCHHHHhccCCccccch----------hh-hh
Confidence 34333333 333344432 455667777666553 3432 122235676665554322 11 12
Q ss_pred Cc-eeeEeeCCceeEEEeccCCC
Q 018849 221 ET-TGIIELGGASVQVTFVSDEP 242 (349)
Q Consensus 221 ~t-~gvlDlGGaStQI~f~~~~~ 242 (349)
.| +.-+|+|||-|-++++....
T Consensus 144 ~t~v~NlDIGGGTtN~slFD~Gk 166 (473)
T COG4819 144 LTRVLNLDIGGGTTNYSLFDAGK 166 (473)
T ss_pred ceEEEEEeccCCccceeeecccc
Confidence 23 44699999999999886543
No 77
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=50.13 E-value=43 Score=35.11 Aligned_cols=57 Identities=9% Similarity=0.098 Sum_probs=32.2
Q ss_pred EEEEEcCCCceEEEEEEeeCCCCccccccceee---cCCCCcccCCCcchHHHHHHHHHHHHHH
Q 018849 81 GVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMR---LNPGLSSYAVNPTNAGDSLKDLLDFAKR 141 (349)
Q Consensus 81 ~vVIDaGSsgtRl~Vy~~~~~~~~~~~~~~~~k---~~pGLss~~~~~~~a~~~l~~Ll~~a~~ 141 (349)
.+.||+|+|++|+.||.-+ ++ .+.......+ ..||. ...+|+...+.+..+++.+.+
T Consensus 2 ~lgID~GTts~Ka~l~d~~-G~-i~~~~~~~~~~~~~~~g~--~eqdp~~~~~~~~~~i~~~~~ 61 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDST-GD-ILALAAQNIKTWTPSSGL--EGQSSVYIWQAICNCVKQVLA 61 (541)
T ss_pred EEEEEecCcCEEEEEEcCC-CC-EEEEEEeeeeeccCCCCc--ccCCHHHHHHHHHHHHHHHHH
Confidence 3679999999999999743 22 2210000111 22333 234777776666666665544
No 78
>PLN03160 uncharacterized protein; Provisional
Probab=49.51 E-value=15 Score=34.12 Aligned_cols=30 Identities=10% Similarity=0.080 Sum_probs=13.8
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHHhhhh
Q 018849 36 KPTKSNPSSFAIPIALTATLITLISCYYVF 65 (349)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (349)
+|++|..|..+++++++++++.++-++|.+
T Consensus 32 ~r~~~~~c~~~~~a~~l~l~~v~~~l~~~v 61 (219)
T PLN03160 32 RRRNCIKCCGCITATLLILATTILVLVFTV 61 (219)
T ss_pred ccccceEEHHHHHHHHHHHHHHHHheeeEE
Confidence 344555565554454444444333333433
No 79
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=49.42 E-value=76 Score=33.55 Aligned_cols=79 Identities=16% Similarity=0.080 Sum_probs=43.9
Q ss_pred ceEEEEEEcCCCceEEEEEEeeCCCCcccc---ccceeecCCCCcccCCCcchHHHHHHHHHHHHHHhCCCCCcCCceEE
Q 018849 78 VKYGVLLDGGSTGTRIHVFSYDTETNHFDF---DLGSMRLNPGLSSYAVNPTNAGDSLKDLLDFAKRKVPPAFWADTEIR 154 (349)
Q Consensus 78 ~~y~vVIDaGSsgtRl~Vy~~~~~~~~~~~---~~~~~k~~pGLss~~~~~~~a~~~l~~Ll~~a~~~ip~~~~~~tpv~ 154 (349)
+.|.|-||.||.+-|..||....+. .+.. .....+..+.+. ..+|++.-+.+...+..+.+..-.+.....-|-
T Consensus 2 ~~~~iGvDvGTgSaRA~v~D~~~G~-~la~a~~p~~~~~~~~~~~--~q~s~d~~~av~~aVr~~v~~agv~~~~V~gIG 78 (544)
T COG1069 2 MAYVIGVDVGTGSARAGVFDCQTGT-LLARAVRPYPMWQPGSNLA--EQHSRDYWEAVCAAVRDVVAKAGVDPADVVGIG 78 (544)
T ss_pred ccEEEEEeecCCceeEEEEEcCCCc-chhhcccceeccccCcccc--ccCHHHHHHHHHHHHHHHHHHcCCChhHeeEEE
Confidence 5799999999999999999987533 1210 111123333333 356776666665555554333222222233444
Q ss_pred EEeeh
Q 018849 155 LMATA 159 (349)
Q Consensus 155 l~ATA 159 (349)
+=||.
T Consensus 79 vDaTc 83 (544)
T COG1069 79 VDATC 83 (544)
T ss_pred Eccee
Confidence 45554
No 80
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=49.36 E-value=33 Score=35.01 Aligned_cols=59 Identities=20% Similarity=0.260 Sum_probs=32.2
Q ss_pred EEEEcCCCceEEEEEEeeCCCCccccccceeecCCCCcc----cCCCcchHHHHHHHHHHHHHH
Q 018849 82 VLLDGGSTGTRIHVFSYDTETNHFDFDLGSMRLNPGLSS----YAVNPTNAGDSLKDLLDFAKR 141 (349)
Q Consensus 82 vVIDaGSsgtRl~Vy~~~~~~~~~~~~~~~~k~~pGLss----~~~~~~~a~~~l~~Ll~~a~~ 141 (349)
+.||+|+|++|+.++.++.....+.. ....+..++... ...||+...+.+...++.+..
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~ 63 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYENECQKLTL-EEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDA 63 (454)
T ss_pred CcEeccCCchheEEEEEcCCCceEEE-EEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhc
Confidence 36999999999999998742111210 011222333221 123566566666666665543
No 81
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=48.49 E-value=1e+02 Score=29.53 Aligned_cols=112 Identities=18% Similarity=0.129 Sum_probs=57.1
Q ss_pred EEEEEEcCCCceEEEEEEeeCCCCccccccceeecCCCCcccCCCc-chHHHHHHHHHHHHHHhCCCCCcCCceEEEEee
Q 018849 80 YGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMRLNPGLSSYAVNP-TNAGDSLKDLLDFAKRKVPPAFWADTEIRLMAT 158 (349)
Q Consensus 80 y~vVIDaGSsgtRl~Vy~~~~~~~~~~~~~~~~k~~pGLss~~~~~-~~a~~~l~~Ll~~a~~~ip~~~~~~tpv~l~AT 158 (349)
+.+=||+||++|...|++-+.+.-.+. .....+.. ..+| +.+.+.++.+++.+.. . ...-.++.+|
T Consensus 2 ~~~GIDiGStttK~Vlid~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~----~--~~~i~~i~~T 68 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEVDGDKEECL-AKRNDRIR------QRDPFKLAEDAYDDLLEEAGL----A--AADVAYCATT 68 (262)
T ss_pred eEEEEEcCcccEEEEEEecCCCeeEEE-EEEEecCC------CCCHHHHHHHHHHHHHHHcCC----C--hhheEEEEEE
Confidence 446799999999999986322110110 00011111 1234 2334455555553321 1 1245678888
Q ss_pred hhhcccChhcHHHHHHHHHHHhhccCccccCCceEEcCCccchhhHHHHHHHhhccCCCCCCCceeeEeeCCceeEEEec
Q 018849 159 AGLRLVDVVVQDKILDSCRRVLRVSGFRFADDWATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTFV 238 (349)
Q Consensus 159 AGmR~L~~~~~~~il~~vr~~l~~~~f~f~~~~v~VIsG~eEg~y~WvavNy~lg~l~~~~~~t~gvlDlGGaStQI~f~ 238 (349)
.-=|.++.. +..+. |=.---.++.|+. | +.-.||||||=-+-+...
T Consensus 69 GYGR~~~~a---------------------~~~vt------EIt~ha~GA~~~~------p-~~~tIiDIGGQD~K~I~~ 114 (262)
T TIGR02261 69 GEGESLAFH---------------------TGHFY------SMTTHARGAIYLN------P-EARAVLDIGALHGRAIRM 114 (262)
T ss_pred CCchhhhhh---------------------cCCee------EEeHHHHHHHHHC------C-CCCEEEEeCCCceEEEEE
Confidence 865554210 00111 3233445667764 2 355799999977766554
No 82
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=45.83 E-value=48 Score=31.06 Aligned_cols=61 Identities=18% Similarity=0.075 Sum_probs=33.0
Q ss_pred eEEEEEEcCCCceEEEEEEeeCCCCccccccceeecCCCCcccCCCcchHHHHHHHHHHHHHHhC
Q 018849 79 KYGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMRLNPGLSSYAVNPTNAGDSLKDLLDFAKRKV 143 (349)
Q Consensus 79 ~y~vVIDaGSsgtRl~Vy~~~~~~~~~~~~~~~~k~~pGLss~~~~~~~a~~~l~~Ll~~a~~~i 143 (349)
+.-+=+|.|....-..|-.-+ +.|..---.+.--+..||. .|--.+-+.++.|++.+++.+
T Consensus 29 k~~vGVDLGT~~iV~~vlD~d-~~Pvag~~~~advVRDGiV---vdf~eaveiVrrlkd~lEk~l 89 (277)
T COG4820 29 KLWVGVDLGTCDIVSMVLDRD-GQPVAGCLDWADVVRDGIV---VDFFEAVEIVRRLKDTLEKQL 89 (277)
T ss_pred ceEEEeecccceEEEEEEcCC-CCeEEEEehhhhhhccceE---EehhhHHHHHHHHHHHHHHhh
Confidence 444689999987665554322 3443211123334566654 233345556667777666543
No 83
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=44.76 E-value=23 Score=37.11 Aligned_cols=26 Identities=27% Similarity=0.535 Sum_probs=23.3
Q ss_pred CCceEEEEEEcCCCceEEEEEEeeCC
Q 018849 76 SSVKYGVLLDGGSTGTRIHVFSYDTE 101 (349)
Q Consensus 76 ~~~~y~vVIDaGSsgtRl~Vy~~~~~ 101 (349)
.++.|++.+|.|||+.|.|+-....+
T Consensus 161 ~~~~YGvAvDlGTS~i~aqlVDL~sg 186 (614)
T COG3894 161 KNEAYGVAVDLGTSGIRAQLVDLKSG 186 (614)
T ss_pred cceeeeeEEecccceeeeEEEeccCC
Confidence 67899999999999999999887764
No 84
>PRK00047 glpK glycerol kinase; Provisional
Probab=43.39 E-value=51 Score=34.04 Aligned_cols=21 Identities=43% Similarity=0.668 Sum_probs=18.2
Q ss_pred eEEEEEEcCCCceEEEEEEee
Q 018849 79 KYGVLLDGGSTGTRIHVFSYD 99 (349)
Q Consensus 79 ~y~vVIDaGSsgtRl~Vy~~~ 99 (349)
.|.+.||+|++++|+.+|..+
T Consensus 5 ~~~lgiD~GTts~Ka~l~d~~ 25 (498)
T PRK00047 5 KYILALDQGTTSSRAIIFDHD 25 (498)
T ss_pred CEEEEEecCCCceEEEEECCC
Confidence 477889999999999999754
No 85
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=42.80 E-value=1.3e+02 Score=29.34 Aligned_cols=19 Identities=16% Similarity=0.483 Sum_probs=15.8
Q ss_pred ceeeEeeCCceeEEEeccC
Q 018849 222 TTGIIELGGASVQVTFVSD 240 (349)
Q Consensus 222 t~gvlDlGGaStQI~f~~~ 240 (349)
...++|+|||.|+++....
T Consensus 148 ~~lVvDiGggttdvsvv~~ 166 (336)
T PRK13928 148 GNMVVDIGGGTTDIAVLSL 166 (336)
T ss_pred eEEEEEeCCCeEEEEEEEe
Confidence 4568999999999998654
No 86
>PRK03011 butyrate kinase; Provisional
Probab=40.38 E-value=37 Score=33.96 Aligned_cols=58 Identities=24% Similarity=0.275 Sum_probs=33.6
Q ss_pred EEEEEEcCCCceEEEEEEeeCCCCccccccceeecCCCCcccCCCcchHHHHHHHHHHHHHH
Q 018849 80 YGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMRLNPGLSSYAVNPTNAGDSLKDLLDFAKR 141 (349)
Q Consensus 80 y~vVIDaGSsgtRl~Vy~~~~~~~~~~~~~~~~k~~pGLss~~~~~~~a~~~l~~Ll~~a~~ 141 (349)
.+.||.-|||+|.+-||+ .+++.+. ....--...|+.|..-.++..-..+.++++.++
T Consensus 3 ~il~inpgststk~a~~~--~~~~~~~--~~~~h~~~~~~~~~~~~~q~~~r~~~i~~~l~~ 60 (358)
T PRK03011 3 RILVINPGSTSTKIAVFE--DEKPIFE--ETLRHSAEELEKFKTIIDQYEFRKQAILDFLKE 60 (358)
T ss_pred EEEEEcCCCchheEEEEc--CCceeee--eccccCHHHHhcCCCccchHHHHHHHHHHHHHH
Confidence 468999999999999996 3333332 111111234666766555554445555555543
No 87
>PTZ00288 glucokinase 1; Provisional
Probab=39.77 E-value=1.3e+02 Score=30.79 Aligned_cols=64 Identities=16% Similarity=0.053 Sum_probs=38.5
Q ss_pred CCceEEEEEEcCCCceEEEEEEeeCCCCccccccceeecCCCCcccCCCcchHHHHHHHHHHHHHHhCC
Q 018849 76 SSVKYGVLLDGGSTGTRIHVFSYDTETNHFDFDLGSMRLNPGLSSYAVNPTNAGDSLKDLLDFAKRKVP 144 (349)
Q Consensus 76 ~~~~y~vVIDaGSsgtRl~Vy~~~~~~~~~~~~~~~~k~~pGLss~~~~~~~a~~~l~~Ll~~a~~~ip 144 (349)
....|.+.+|+|-|++|+-+|+..+....... ....+ +.--+.+..+..+.+..+++..++..|
T Consensus 23 ~~~~~~~~~DiGgt~~R~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~ 86 (405)
T PTZ00288 23 SSGPIFVGCDVGGTNARVGFAREVQHDDSGVH-IIYVR----FNVTKTDIRELLEFFDEVLQKLKKNLS 86 (405)
T ss_pred ccCCeEEEEEecCCceEEEEEeccCCCCCcee-EEEEe----cccccccHHHHHHHHHHHHHHHHhcCc
Confidence 35578899999999999999987431111110 01111 110133455566777888887777654
No 88
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=39.49 E-value=69 Score=32.15 Aligned_cols=10 Identities=20% Similarity=0.019 Sum_probs=5.3
Q ss_pred CCCCceeeee
Q 018849 303 SPKGYLHHVE 312 (349)
Q Consensus 303 ~p~Gy~~~~~ 312 (349)
+..|....+.
T Consensus 335 Lr~Gm~~~v~ 344 (390)
T PRK15136 335 LRIGLSTLVT 344 (390)
T ss_pred ccCCceEEEE
Confidence 5556555543
No 89
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=39.24 E-value=1.3e+02 Score=29.67 Aligned_cols=84 Identities=10% Similarity=0.130 Sum_probs=47.4
Q ss_pred ceEEEEeehhhcccChhcHHH---HHHHHHHHhhccCccccCCceEEcCCccchhh-------HHHH-HHHhhccCCCCC
Q 018849 151 TEIRLMATAGLRLVDVVVQDK---ILDSCRRVLRVSGFRFADDWATVITGSDEGVY-------AWIV-ANYALGTLGGDP 219 (349)
Q Consensus 151 tpv~l~ATAGmR~L~~~~~~~---il~~vr~~l~~~~f~f~~~~v~VIsG~eEg~y-------~Wva-vNy~lg~l~~~~ 219 (349)
..+-+.=|+-|=+.-+..++- |++.+.+.+.. ++.|-.++-.+++-++=..+ +|++ +.++ +..
T Consensus 53 ~~~avtMTgELaD~f~~r~~GV~~i~~~~~~~~~~-~~~i~~s~GG~~s~~~a~~~pv~~~~Sg~~a~A~~l-a~~---- 126 (318)
T TIGR03123 53 DNVAVTMTGELADCFEDKAEGVEFILAAVESAFGS-PVSVFASDGGFVSAEEALTNPLDVAAANWLATAQLI-AKR---- 126 (318)
T ss_pred ceEEEEeehhhhhhhcCHHHHHHHHHHHHHHhcCC-CeEEEecCCCCccHHHHHHhHHHHHHhhHHHHHHHH-Hhc----
Confidence 467777788776654444433 46677776632 33332212222222111111 6887 5554 321
Q ss_pred CCceeeEeeCCceeEEEeccC
Q 018849 220 SETTGIIELGGASVQVTFVSD 240 (349)
Q Consensus 220 ~~t~gvlDlGGaStQI~f~~~ 240 (349)
.+...++||||-||-|+...+
T Consensus 127 ~~~~I~~DmGGTTtDi~~i~~ 147 (318)
T TIGR03123 127 IPECLFVDMGSTTTDIIPIID 147 (318)
T ss_pred CCCEEEEEcCccceeeEEecC
Confidence 245779999999999998754
No 90
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=37.62 E-value=98 Score=31.95 Aligned_cols=41 Identities=17% Similarity=0.394 Sum_probs=25.5
Q ss_pred eEEcCCccchhhHHHHHHHhhccCCCCCCCceeeEeeCCceeEEEecc
Q 018849 192 ATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTFVS 239 (349)
Q Consensus 192 v~VIsG~eEg~y~WvavNy~lg~l~~~~~~t~gvlDlGGaStQI~f~~ 239 (349)
+|||.-.-- .|+-|.+..-. ......++|||||-..+....
T Consensus 203 ~RIiNePTa-----AAIAYGLDKk~--gEknilVfDLGGGTFDVSlLt 243 (663)
T KOG0100|consen 203 VRIINEPTA-----AAIAYGLDKKD--GEKNILVFDLGGGTFDVSLLT 243 (663)
T ss_pred EEeecCccH-----HHHHhcccccC--CcceEEEEEcCCceEEEEEEE
Confidence 466654433 24446665432 235678999999988776643
No 91
>PRK09213 pur operon repressor; Provisional
Probab=37.55 E-value=57 Score=31.44 Aligned_cols=66 Identities=15% Similarity=0.086 Sum_probs=44.8
Q ss_pred CcccCCCcchHHHHHHHHHHHHHHhCCCCCcCCceEEEEeehhhcccCh---hcHHHHHHHHHHHhhcc
Q 018849 118 LSSYAVNPTNAGDSLKDLLDFAKRKVPPAFWADTEIRLMATAGLRLVDV---VVQDKILDSCRRVLRVS 183 (349)
Q Consensus 118 Lss~~~~~~~a~~~l~~Ll~~a~~~ip~~~~~~tpv~l~ATAGmR~L~~---~~~~~il~~vr~~l~~~ 183 (349)
|+.|++.-+.|.-+|.+=+...++.......+.-...-.|..|.|..|. ++.++|++.+.+.|.+.
T Consensus 26 l~~f~~~~~~aks~ised~~i~~~~~~~~~~g~~~t~~ga~ggv~~~p~~~~~~a~~~~~~L~~~L~~~ 94 (271)
T PRK09213 26 LTFFAERYGAAKSSISEDLVIIKETFEKQGIGTLETVPGAAGGVKYIPSISEEEAREFVEELCERLSEP 94 (271)
T ss_pred HHHHHHHhccccchhhhhHHHHHHHHHhcCCceEEEeCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHhC
Confidence 5556665555555555545545554444555666778899999999884 66788999888887653
No 92
>PHA02692 hypothetical protein; Provisional
Probab=32.84 E-value=68 Score=24.64 Aligned_cols=6 Identities=17% Similarity=0.141 Sum_probs=2.3
Q ss_pred CCCCCC
Q 018849 36 KPTKSN 41 (349)
Q Consensus 36 ~~~~~~ 41 (349)
+++++.
T Consensus 38 ~~~~~~ 43 (70)
T PHA02692 38 DRSKGV 43 (70)
T ss_pred cccCCc
Confidence 333333
No 93
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=28.59 E-value=44 Score=27.37 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=22.2
Q ss_pred hcccChhcHHHHHHHHHHHhhccCccccCC--ceEEcCCccchhh
Q 018849 161 LRLVDVVVQDKILDSCRRVLRVSGFRFADD--WATVITGSDEGVY 203 (349)
Q Consensus 161 mR~L~~~~~~~il~~vr~~l~~~~f~f~~~--~v~VIsG~eEg~y 203 (349)
+|.-.++.++.+++.+... ...+..+.+. .++||+|+||-.|
T Consensus 42 VRf~~~~~A~~a~~~~~~~-~~~~~~i~~~~~~~~vLeGeeE~~Y 85 (105)
T PF08777_consen 42 VRFKTPEAAQKALEKLKEA-NDGKLKIKGKEVTLEVLEGEEEEEY 85 (105)
T ss_dssp EEESS---HHHHHHHHHHT-TTS-B-TTSSSEEEE---HHHHHHH
T ss_pred EEECCcchHHHHHHHHHhc-cCCceEEcCceEEEEECCCHHHHHH
Confidence 4554455677888888776 2223434333 3699999999887
No 94
>PHA03164 hypothetical protein; Provisional
Probab=27.77 E-value=41 Score=26.28 Aligned_cols=14 Identities=29% Similarity=0.290 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 018849 48 PIALTATLITLISC 61 (349)
Q Consensus 48 ~~~~~~~~~~~~~~ 61 (349)
|++++.|+|..|.+
T Consensus 60 FlvLtgLaIamILf 73 (88)
T PHA03164 60 FLVLTGLAIAMILF 73 (88)
T ss_pred hHHHHHHHHHHHHH
Confidence 44444444444433
No 95
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=26.39 E-value=54 Score=33.61 Aligned_cols=22 Identities=27% Similarity=0.205 Sum_probs=18.9
Q ss_pred ceEEEEEEcCCCceEEEEEEee
Q 018849 78 VKYGVLLDGGSTGTRIHVFSYD 99 (349)
Q Consensus 78 ~~y~vVIDaGSsgtRl~Vy~~~ 99 (349)
++|.+=||+||+.|...|++-.
T Consensus 1 m~y~lGIDIGSTsTKaVVmd~~ 22 (432)
T TIGR02259 1 MECFVGIDLGSTTTKAVLMDDK 22 (432)
T ss_pred CceEEEEEcCchhEEEEEEcCC
Confidence 3588899999999999999754
No 96
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=26.08 E-value=5.6e+02 Score=24.75 Aligned_cols=41 Identities=20% Similarity=0.111 Sum_probs=25.3
Q ss_pred ccchhhHHHHHHHhhccCCCCCCCceeeEeeCCceeEEEecc
Q 018849 198 SDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTFVS 239 (349)
Q Consensus 198 ~eEg~y~WvavNy~lg~l~~~~~~t~gvlDlGGaStQI~f~~ 239 (349)
.||=.-.-.+++|++..-...+.....+++||-| +-|.+..
T Consensus 78 ~dE~~a~~~g~~~ll~~~~~~~~~p~llvnIGsG-vSi~~v~ 118 (279)
T TIGR00555 78 FDEFDALIQGLNYLLKEEPKDDIYPYLLVNIGTG-TSILYVD 118 (279)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCceEEEEecCC-eEEEEEc
Confidence 3455556678888875432222345679999655 6677764
No 97
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=24.73 E-value=1.2e+02 Score=29.24 Aligned_cols=67 Identities=10% Similarity=0.068 Sum_probs=45.1
Q ss_pred CcccCCCcchHHHHHHHHHHHHHHhCCCCCcCCceEEEEeehhhcccCh---hcHHHHHHHHHHHhhccC
Q 018849 118 LSSYAVNPTNAGDSLKDLLDFAKRKVPPAFWADTEIRLMATAGLRLVDV---VVQDKILDSCRRVLRVSG 184 (349)
Q Consensus 118 Lss~~~~~~~a~~~l~~Ll~~a~~~ip~~~~~~tpv~l~ATAGmR~L~~---~~~~~il~~vr~~l~~~~ 184 (349)
|+.|++.-+.|.-+|.+=+...++.......+.-...-.|..|.|..|. ++.+++++.+.+.|.+.+
T Consensus 24 l~~f~~~~~~aks~ised~~i~~~~~~~~~~g~~~t~~ga~ggv~~~p~~~~~~~~~~~~~l~~~l~~~~ 93 (268)
T TIGR01743 24 LNFFSERYESAKSSISEDIVIIKETFEKFGIGKLLTVPGAAGGVKYIPKMSQAEAEEFVEELCQSLSEPE 93 (268)
T ss_pred HHHHHHHhccccchhhhhHHHHHHHHHhcCCceEEEeCCCCCCeEEEeCCCHHHHHHHHHHHHHHHHHCC
Confidence 5556655555555555545545554444555666778889999999884 567888998888887643
No 98
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=24.63 E-value=70 Score=26.97 Aligned_cols=13 Identities=31% Similarity=0.342 Sum_probs=7.7
Q ss_pred chhHHHHHHHHHH
Q 018849 44 SFAIPIALTATLI 56 (349)
Q Consensus 44 ~~~~~~~~~~~~~ 56 (349)
+|.+|+++++|+|
T Consensus 4 l~~iii~~i~l~~ 16 (130)
T PF12273_consen 4 LFAIIIVAILLFL 16 (130)
T ss_pred eHHHHHHHHHHHH
Confidence 4666777765443
No 99
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=24.40 E-value=1.9e+02 Score=32.04 Aligned_cols=72 Identities=18% Similarity=0.186 Sum_probs=42.7
Q ss_pred HHHHHHHhhccC---CCCCCCceeeEeeCCceeEEEeccC----CCCCccceeeeEecceeEEEEEeecccccHHHHHHH
Q 018849 204 AWIVANYALGTL---GGDPSETTGIIELGGASVQVTFVSD----EPLPQEFSRTLKFGNVTYNLYSHSFLHFGQNVAFET 276 (349)
Q Consensus 204 ~WvavNy~lg~l---~~~~~~t~gvlDlGGaStQI~f~~~----~~~~~~~~~~~~l~~~~~~lys~S~Lg~G~~~ar~~ 276 (349)
.-+|+||.+.+- ...+ ....+-|||.|||--+.+.- +...+....++++-|.-|+ +++|-.+...|
T Consensus 196 ~a~Al~ygv~rRk~i~~~~-q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd------~tLGG~e~~~r 268 (902)
T KOG0104|consen 196 TAVALNYGVFRRKEINETP-QHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFD------RTLGGLEMTMR 268 (902)
T ss_pred hHHHhhhhhhccccCCCCc-eEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccC------CccchHHHHHH
Confidence 467899987642 2222 34668999999997665431 1111123334444444333 57788888777
Q ss_pred HHHHhc
Q 018849 277 LRELLS 282 (349)
Q Consensus 277 ~~~~l~ 282 (349)
+...+.
T Consensus 269 Lr~~l~ 274 (902)
T KOG0104|consen 269 LRDHLA 274 (902)
T ss_pred HHHHHH
Confidence 776664
No 100
>PF10726 DUF2518: Protein of function (DUF2518); InterPro: IPR019664 This entry contains the Ycf51 protein family, which is conserved in Cyanobacteria. The function is not known.
Probab=24.02 E-value=1e+02 Score=26.97 Aligned_cols=18 Identities=28% Similarity=0.660 Sum_probs=14.1
Q ss_pred CCCCCCceEEEEEEcCCC
Q 018849 72 SFPPSSVKYGVLLDGGST 89 (349)
Q Consensus 72 ~~~~~~~~y~vVIDaGSs 89 (349)
..-+...+|.+|.|-|++
T Consensus 64 ~~IpGA~~~~~VyDnG~~ 81 (145)
T PF10726_consen 64 VVIPGAVRYPIVYDNGAD 81 (145)
T ss_pred ccccCceEeeEEEECCCc
Confidence 335567899999999876
No 101
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=23.62 E-value=1e+02 Score=30.76 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=17.3
Q ss_pred EEEEEcCCCceEEEEEEeeC
Q 018849 81 GVLLDGGSTGTRIHVFSYDT 100 (349)
Q Consensus 81 ~vVIDaGSsgtRl~Vy~~~~ 100 (349)
..||..|||+|++-+|+-+.
T Consensus 2 il~in~Gsts~k~alf~~~~ 21 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFEDER 21 (351)
T ss_pred EEEEecCchhheEEEEeCCC
Confidence 57999999999999997554
No 102
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=22.38 E-value=40 Score=31.50 Aligned_cols=31 Identities=13% Similarity=0.029 Sum_probs=0.0
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHHhhh
Q 018849 34 NPKPTKSNPSSFAIPIALTATLITLISCYYV 64 (349)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (349)
+.+++|.+.-|-.+|.+.+||.|.+++.+|+
T Consensus 6 r~KrRK~N~iLNiaI~IV~lLIiiva~~lf~ 36 (217)
T PF07423_consen 6 RQKRRKTNKILNIAIGIVSLLIIIVAYQLFF 36 (217)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHhhhhee
No 103
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=21.65 E-value=3.5e+02 Score=26.21 Aligned_cols=71 Identities=20% Similarity=0.224 Sum_probs=39.5
Q ss_pred ceEEcCCccchhhHHHHHHHhhccCCCCCCCceeeEeeCCceeEEEeccCCCCCccceeeeEecceeEEEEEeecccccH
Q 018849 191 WATVITGSDEGVYAWIVANYALGTLGGDPSETTGIIELGGASVQVTFVSDEPLPQEFSRTLKFGNVTYNLYSHSFLHFGQ 270 (349)
Q Consensus 191 ~v~VIsG~eEg~y~WvavNy~lg~l~~~~~~t~gvlDlGGaStQI~f~~~~~~~~~~~~~~~l~~~~~~lys~S~Lg~G~ 270 (349)
.+.|+. |++=+|+..--- +. ..+..+|||+||..+-++.....- + ..--.++.+..|.
T Consensus 142 ~V~V~P---Q~~~A~~~~~~~---~~--~~~~~lVVDIGG~T~Dv~~v~~~~-~-------------~~~~~~~~~~~Gv 199 (318)
T PF06406_consen 142 DVEVFP---QSVGAVFDALMD---LD--EDESVLVVDIGGRTTDVAVVRGGL-P-------------DISKCSGTPEIGV 199 (318)
T ss_dssp EEEEEE---SSHHHHHHHHHT---S---TTSEEEEEEE-SS-EEEEEEEGGG----------------EEEEEEETTSST
T ss_pred eEEEEc---ccHHHHHHHHHh---hc--ccCcEEEEEcCCCeEEeeeecCCc-c-------------ccchhccCCchhH
Confidence 367774 555454443211 22 224678999999999988653210 0 0011234467888
Q ss_pred HHHHHHHHHHhcc
Q 018849 271 NVAFETLRELLSS 283 (349)
Q Consensus 271 ~~ar~~~~~~l~~ 283 (349)
..+.+.+.+.+.+
T Consensus 200 s~~~~~I~~~l~~ 212 (318)
T PF06406_consen 200 SDLYDAIAQALRS 212 (318)
T ss_dssp HHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877655
No 104
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=21.40 E-value=2.2e+02 Score=28.94 Aligned_cols=56 Identities=14% Similarity=0.206 Sum_probs=30.0
Q ss_pred EEEEcCCCceEEEEEEeeCCCCccccccce---eecCCCCcccCCCcchHHHHHHHHHHHHHH
Q 018849 82 VLLDGGSTGTRIHVFSYDTETNHFDFDLGS---MRLNPGLSSYAVNPTNAGDSLKDLLDFAKR 141 (349)
Q Consensus 82 vVIDaGSsgtRl~Vy~~~~~~~~~~~~~~~---~k~~pGLss~~~~~~~a~~~l~~Ll~~a~~ 141 (349)
+.||+|++++|+.||..+. + .+...... ....||-. ..+++...+.+..+++.+.+
T Consensus 1 lgIDiGtt~ik~~l~d~~g-~-i~~~~~~~~~~~~~~~g~~--e~d~~~~~~~l~~~i~~~~~ 59 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQG-E-VIASGSAPHTVISPHPGWS--EQDPEDWWDATEEAIKELLE 59 (481)
T ss_pred CceeecCcceEEEEECCCC-C-EEEEEeecccccCCCCCCe--eeCHHHHHHHHHHHHHHHHH
Confidence 3699999999999998432 2 22100000 11123422 23566655556666655543
No 105
>PF09874 DUF2101: Predicted membrane protein (DUF2101); InterPro: IPR018663 This family of conserved hypothetical proteins has no known function.
Probab=21.23 E-value=1.8e+02 Score=26.88 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=17.8
Q ss_pred CCceEEEEEEcCCCceEEEE
Q 018849 76 SSVKYGVLLDGGSTGTRIHV 95 (349)
Q Consensus 76 ~~~~y~vVIDaGSsgtRl~V 95 (349)
-...||+|.|.|-+..|+.|
T Consensus 142 RdyTyG~VeEv~~~~v~V~V 161 (206)
T PF09874_consen 142 RDYTYGVVEEVKENLVRVFV 161 (206)
T ss_pred ccceeEEEEEecCCEEEEEE
Confidence 46889999999999988887
No 106
>COG4499 Predicted membrane protein [Function unknown]
Probab=21.08 E-value=78 Score=32.16 Aligned_cols=34 Identities=21% Similarity=0.112 Sum_probs=19.0
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhh
Q 018849 32 SRNPKPTKSNPSSFAIPIALTATLITLISCYYVF 65 (349)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (349)
-|+.+.+-.|.-+++++++++++++++.|++|+.
T Consensus 212 VpK~k~~ifk~~giGliillvl~li~~~Y~~f~~ 245 (434)
T COG4499 212 VPKKKYTIFKYFGIGLIILLVLLLIYFTYYYFSN 245 (434)
T ss_pred cccccceehhhHHHhHHHHHHHHHHHHHHHHHHc
Confidence 4455544444344445566666666666666655
No 107
>PF07234 DUF1426: Protein of unknown function (DUF1426); InterPro: IPR009871 This family consists of several Banana bunchy top virus proteins of around 120 residues in length. Q9IGU4 from SWISSPROT is annotated a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=21.06 E-value=1.1e+02 Score=25.18 Aligned_cols=21 Identities=10% Similarity=0.115 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhh
Q 018849 45 FAIPIALTATLITLISCYYVF 65 (349)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~ 65 (349)
|++|+++++++|.+||.+..+
T Consensus 14 wFLF~~AIFiAItIlYILLal 34 (117)
T PF07234_consen 14 WFLFFGAIFIAITILYILLAL 34 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888876543
No 108
>PRK13865 type IV secretion system protein VirB8; Provisional
Probab=20.76 E-value=1e+02 Score=28.96 Aligned_cols=15 Identities=7% Similarity=0.091 Sum_probs=10.2
Q ss_pred eEeeCCceeEEEecc
Q 018849 225 IIELGGASVQVTFVS 239 (349)
Q Consensus 225 vlDlGGaStQI~f~~ 239 (349)
+-.+|++-.||-|..
T Consensus 165 i~~~~~~~AqVRF~k 179 (229)
T PRK13865 165 SNDVTPGVQQIRYKR 179 (229)
T ss_pred EEecCCCEEEEEEEE
Confidence 455677778888853
Done!