Your job contains 1 sequence.
>018850
MVSDSITHNAPIASAPNSRDFSKKKRTNRSAKLKQCKLDVRREQWLSQVGAVKSKCCKED
QNGARKESARSLENLKPRDEDNSNDSGSMHHDSDSESPSNSPTNSLLCGNSGTNPGTNFI
GSSSSSSSVSGSSGGGCCSGSITEEEEEDGCLDDWEAVADALAADDDNNKQEPEHDRSCS
QSPSESQLSVKSDSLHELANGLSLDSVKSMPDGARMVPSVSENNRRAWRPDDAFRPQSLP
NLAKQRSFPAADRHFGQGGVPWACNNVLAAPSSCPICYEDLDYTDSSFLPCLCGFRLCLF
CHKRILEEDGRCPGCRKPYEHDQVESEAIVQGGSMTFRLARSCSMIARS
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 018850
(349 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2097930 - symbol:AT3G48070 species:3702 "Arabi... 435 2.3e-66 2
TAIR|locus:2170708 - symbol:AT5G62910 species:3702 "Arabi... 458 2.2e-43 1
TAIR|locus:2027262 - symbol:AT1G74870 species:3702 "Arabi... 186 2.2e-22 2
UNIPROTKB|I3LC53 - symbol:LOC100622832 "Uncharacterized p... 170 1.0e-10 1
ZFIN|ZDB-GENE-040426-1164 - symbol:zgc:63566 "zgc:63566" ... 172 4.7e-10 1
UNIPROTKB|E2QXU6 - symbol:CNOT4 "Uncharacterized protein"... 170 4.9e-10 1
UNIPROTKB|O95628 - symbol:CNOT4 "CCR4-NOT transcription c... 170 4.9e-10 1
MGI|MGI:1859026 - symbol:Cnot4 "CCR4-NOT transcription co... 170 4.9e-10 1
UNIPROTKB|D4ADF8 - symbol:Cnot4 "RCG28297" species:10116 ... 170 4.9e-10 1
UNIPROTKB|F1MWA7 - symbol:CNOT4 "Uncharacterized protein"... 170 5.9e-10 1
UNIPROTKB|E2QXU7 - symbol:CNOT4 "Uncharacterized protein"... 170 5.9e-10 1
ZFIN|ZDB-GENE-090313-262 - symbol:si:dkey-230e6.2 "si:dke... 171 6.0e-10 1
UNIPROTKB|E2QXU8 - symbol:CNOT4 "Uncharacterized protein"... 170 6.9e-10 1
RGD|1310318 - symbol:Cnot4 "CCR4-NOT transcription comple... 170 6.9e-10 1
UNIPROTKB|F8VQP3 - symbol:CNOT4 "CCR4-NOT transcription c... 170 6.9e-10 1
UNIPROTKB|F1MAD6 - symbol:Cnot4 "Protein Cnot4" species:1... 170 6.9e-10 1
UNIPROTKB|Q5ZJC9 - symbol:CNOT4 "Uncharacterized protein"... 170 7.6e-10 1
UNIPROTKB|E1C4B3 - symbol:CNOT4 "Uncharacterized protein"... 170 7.7e-10 1
POMBASE|SPAC16C9.04c - symbol:mot2 "CCR4-Not complex subu... 164 1.8e-09 1
SGD|S000000870 - symbol:MOT2 "Ubiquitin-protein ligase su... 161 5.6e-09 1
DICTYBASE|DDB_G0275005 - symbol:DDB_G0275005 "putative CC... 161 1.9e-08 1
TAIR|locus:2085617 - symbol:AT3G45630 species:3702 "Arabi... 156 4.4e-08 1
WB|WBGene00003827 - symbol:ntl-4 species:6239 "Caenorhabd... 154 5.5e-08 1
FB|FBgn0051716 - symbol:Cnot4 "Cnot 4 homologue" species:... 152 1.3e-07 1
TAIR|locus:2056563 - symbol:AT2G28540 species:3702 "Arabi... 145 7.4e-07 1
CGD|CAL0000791 - symbol:NOT4 species:5476 "Candida albica... 136 3.6e-06 1
UNIPROTKB|Q59UI5 - symbol:NOT4 "Potential mRNA deadenylas... 136 3.6e-06 1
UNIPROTKB|H0YAI5 - symbol:RNF4 "E3 ubiquitin-protein liga... 80 7.6e-05 2
>TAIR|locus:2097930 [details] [associations]
symbol:AT3G48070 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 PROSITE:PS50089 EMBL:CP002686
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 IPI:IPI00657445
RefSeq:NP_001030828.1 UniGene:At.23454 ProteinModelPortal:F4JCT1
SMR:F4JCT1 PRIDE:F4JCT1 EnsemblPlants:AT3G48070.2 GeneID:823962
KEGG:ath:AT3G48070 OMA:APDDIFR PhylomeDB:F4JCT1 Uniprot:F4JCT1
Length = 350
Score = 435 (158.2 bits), Expect = 2.3e-66, Sum P(2) = 2.3e-66
Identities = 80/127 (62%), Positives = 92/127 (72%)
Query: 222 ENNRRAWRPDDAFRPQSLPNLAKQRSFPAADRHFGQGGVPWACNNVLAAPSSCPICYEDL 281
+ + +AWRPDD RPQ LPNL KQRSFP + HF ++V PSSCPICYEDL
Sbjct: 201 QKSNQAWRPDDKLRPQGLPNLEKQRSFPVMNLHF---------SSVTVVPSSCPICYEDL 251
Query: 282 DYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHDQVESEAIVQGGSMTFRLAR 341
D TDS+FLPC CGFRLCLFCHK I + DGRCPGCRKPYE + ++ EA VQGG +T RLAR
Sbjct: 252 DLTDSNFLPCPCGFRLCLFCHKTICDGDGRCPGCRKPYERNTIKFEASVQGGGLTIRLAR 311
Query: 342 SCSMIAR 348
S SM R
Sbjct: 312 SSSMFCR 318
Score = 258 (95.9 bits), Expect = 2.3e-66, Sum P(2) = 2.3e-66
Identities = 75/160 (46%), Positives = 90/160 (56%)
Query: 1 MVSDSITHNAPIASAPNSRDFSKKKRTNRSAKLKQCKLDVRREQWLSQVGAVKSKCCKED 60
M+SDSIT NA SAP +RDF KKKRTNRSAKLKQ KL +RREQWLSQV + +K KE+
Sbjct: 1 MISDSIT-NASATSAPTARDFGKKKRTNRSAKLKQSKLGLRREQWLSQVAMI-NKGDKEE 58
Query: 61 QN-----GARKESARSLEN-LKPRDEDNSNDSGSMHHDSDSESPSNSPTNSLLCGNSGTN 114
G+ K R L ++ DEDN+ G+ H+S ES SNSP NS+L SG N
Sbjct: 59 MESNRRIGSEKPDQRDLPRPVENLDEDNN---GTHRHESFIESLSNSP-NSIL---SGMN 111
Query: 115 PGTNFIXXXXXXXXXXXXXXXXXXXXXITEEEE--EDGCL 152
NF ITEEE+ +DGCL
Sbjct: 112 SIPNF-------SSSSSSGSGGSCSGNITEEEDADDDGCL 144
Score = 42 (19.8 bits), Expect = 4.4e-25, Sum P(2) = 4.4e-25
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 320 EHDQVESEAIVQGGSMTFRLARSCS 344
EH+ ++ A++ G + R A++ S
Sbjct: 172 EHEDIKQSALIGGADVVLRDAKADS 196
>TAIR|locus:2170708 [details] [associations]
symbol:AT5G62910 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 PROSITE:PS50089 EMBL:CP002688
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AB009053
HSSP:O95628 EMBL:BT024718 IPI:IPI00543424 RefSeq:NP_201096.1
UniGene:At.29027 ProteinModelPortal:Q9FM05 SMR:Q9FM05 PRIDE:Q9FM05
EnsemblPlants:AT5G62910.1 GeneID:836411 KEGG:ath:AT5G62910
TAIR:At5g62910 HOGENOM:HOG000083855 InParanoid:Q9FM05 OMA:HHESFME
PhylomeDB:Q9FM05 ProtClustDB:CLSN2684023 Genevestigator:Q9FM05
Uniprot:Q9FM05
Length = 327
Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 112/313 (35%), Positives = 150/313 (47%)
Query: 53 KSKCCKEDQNGARKE---SARSLENLKPRDEDNSNDSGSMHHDSDSE---SPSNSPTNSL 106
KS K+++ G R+E S ++ N + ++E + N S HH+S + N+ N+L
Sbjct: 26 KSAKMKQNKLGLRREQWLSQVAVSNKEVKEERSVNRSQKPHHESSDKVRREEDNNGGNNL 85
Query: 107 LC--------GNS---GTNPGTNFIXXXXXXXXXXXXXXXXXXXXXITEEEEEDGCLXXX 155
L NS GT TNF ++++DGC+
Sbjct: 86 LHHESFMESPSNSSVGGTYSSTNFSGRSSRSSSSSSGFCSGNITEEENVDDDDDGCVDDW 145
Query: 156 XXXXXXXXXXXXNNKQEPEHDRXXXXXXXXXXXXXXXDSLHELANGLSLDSVKSMPDGAR 215
K+ + DS +++ + V+
Sbjct: 146 EAVADALAAEEEIEKKSRPLESVKEQVSVGQSASNVCDS--SISDASDVVGVEDPKQECL 203
Query: 216 MVPSVSENNRRAWRPDDAFRPQSLPNLAKQRSFPAADRHFGQGGVPWACNNVLAAPSSCP 275
V S + + RAWR DD RPQ LPNLAKQ SFP D+ F +A PSSCP
Sbjct: 204 RVSSRKQTSNRAWRLDDDLRPQGLPNLAKQLSFPELDKRFSS----------VAIPSSCP 253
Query: 276 ICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHDQVESEAIVQGGSM 335
ICYEDLD TDS+FLPC CGFRLCLFCHK I + DGRCPGCRKPYE + V++E +QGG +
Sbjct: 254 ICYEDLDLTDSNFLPCPCGFRLCLFCHKTICDGDGRCPGCRKPYERNMVKAETSIQGGGL 313
Query: 336 TFRLARSCSMIAR 348
T RLARS SM +
Sbjct: 314 TIRLARSSSMFCK 326
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 91/266 (34%), Positives = 126/266 (47%)
Query: 1 MVSDSITHNAPIASAPNSRDFSKKKRTNRSAKLKQCKLDVRREQWLSQVGAVKSKCCKED 60
M++DSIT NA SAP RD KKKR N+SAK+KQ KL +RREQWLSQV AV +K KE+
Sbjct: 1 MITDSIT-NASATSAP--RDSGKKKRNNKSAKMKQNKLGLRREQWLSQV-AVSNKEVKEE 56
Query: 61 Q--NGARKESARSLENLKPRDEDNSNDSGSMHHDSDSESPSNSPTNSLLCGNSGTNPGTN 118
+ N ++K S + ++ R+EDN+ + +HH+S ESPSNS GT TN
Sbjct: 57 RSVNRSQKPHHESSDKVR-REEDNNGGNNLLHHESFMESPSNSSVG-------GTYSSTN 108
Query: 119 FIXXXXXXXXXXXXXXXXXXXXXITEEEEEDGCLXXXXXXXXXXXXXXXNNKQEPEHDRX 178
F ++++DGC+ K+ +
Sbjct: 109 FSGRSSRSSSSSSGFCSGNITEEENVDDDDDGCVDDWEAVADALAAEEEIEKKSRPLESV 168
Query: 179 XXXXXXXXXXXXXXDSLHELANGLSLDSVKSMPDGARMVPSVSENNRRAWRPDDAFRPQS 238
DS +++ + V+ V S + + RAWR DD RPQ
Sbjct: 169 KEQVSVGQSASNVCDS--SISDASDVVGVEDPKQECLRVSSRKQTSNRAWRLDDDLRPQG 226
Query: 239 LPNLAKQRSFPAADRHFGQGGVPWAC 264
LPNLAKQ SFP D+ F +P +C
Sbjct: 227 LPNLAKQLSFPELDKRFSSVAIPSSC 252
>TAIR|locus:2027262 [details] [associations]
symbol:AT1G74870 species:3702 "Arabidopsis thaliana"
[GO:0005794 "Golgi apparatus" evidence=ISM] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0042991 "transcription factor import
into nucleus" evidence=RCA] InterPro:IPR001841 PROSITE:PS50089
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AC008263 EMBL:AC013258
eggNOG:COG5175 HSSP:O95628 EMBL:BT010439 EMBL:AK175181
IPI:IPI00532990 PIR:C96778 RefSeq:NP_177625.1 UniGene:At.34831
ProteinModelPortal:Q9S7I7 SMR:Q9S7I7 PRIDE:Q9S7I7
EnsemblPlants:AT1G74870.1 GeneID:843826 KEGG:ath:AT1G74870
TAIR:At1g74870 HOGENOM:HOG000153442 OMA:SENEARC PhylomeDB:Q9S7I7
ProtClustDB:CLSN2914586 ArrayExpress:Q9S7I7 Genevestigator:Q9S7I7
Uniprot:Q9S7I7
Length = 289
Score = 186 (70.5 bits), Expect = 2.2e-22, Sum P(2) = 2.2e-22
Identities = 35/71 (49%), Positives = 43/71 (60%)
Query: 274 CPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHDQVESEAI--VQ 331
CPIC E +D TD F PC CGFR+CLFCH +I E + RCP CRK Y+ +S + Q
Sbjct: 212 CPICSELMDATDLEFEPCTCGFRICLFCHNKISENEARCPACRKDYKKTSKKSGEVGYQQ 271
Query: 332 GGSMTFRLARS 342
G T L+ S
Sbjct: 272 RGRGTIPLSPS 282
Score = 120 (47.3 bits), Expect = 2.2e-22, Sum P(2) = 2.2e-22
Identities = 39/107 (36%), Positives = 55/107 (51%)
Query: 2 VSDS-ITHNAPIASAPNSRDFSKKKRTNRSAKLKQCKLDVRREQWLSQVGAVKSKCCKED 60
V+DS + H +PI S DFSKK++ N KLKQ K+D RR+QW+SQ K E+
Sbjct: 4 VTDSELFHGSPI-----STDFSKKRKANWFCKLKQWKIDARRKQWISQW---KKANVDEE 55
Query: 61 QNGARKESA-RSLENLKPRDEDNSNDSGSMHHDSDSESPSNSPTNSL 106
+ G R S L + K D +D + S ++SPT+ L
Sbjct: 56 EIGRRLRSLLEKLTDQKAWRIDYDDDEDDEIDLERTSSFASSPTSVL 102
>UNIPROTKB|I3LC53 [details] [associations]
symbol:LOC100622832 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:3.30.40.10 InterPro:IPR013083
GeneTree:ENSGT00390000000068 EMBL:FP015781
Ensembl:ENSSSCT00000029334 OMA:GKFGKIQ Uniprot:I3LC53
Length = 304
Score = 170 (64.9 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRI-LEEDGRCPGCRKPYEHD 322
P CP+C E L+ D +F PC CG+++C FC RI +E+G CP CRKPY D
Sbjct: 11 PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63
>ZFIN|ZDB-GENE-040426-1164 [details] [associations]
symbol:zgc:63566 "zgc:63566" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50089 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184
SMART:SM00360 ZFIN:ZDB-GENE-040426-1164 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 KO:K10643
Gene3D:3.30.40.10 InterPro:IPR013083 HOVERGEN:HBG051043 HSSP:O95628
EMBL:BC054913 IPI:IPI00507902 RefSeq:NP_957463.1 UniGene:Dr.79144
ProteinModelPortal:Q7SYD1 SMR:Q7SYD1 STRING:Q7SYD1 GeneID:394144
KEGG:dre:394144 InParanoid:Q7SYD1 NextBio:20815095
ArrayExpress:Q7SYD1 Uniprot:Q7SYD1
Length = 798
Score = 172 (65.6 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 263 ACN-NVLAAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRI-LEEDGRCPGCRKPYE 320
+C+ V P CP+C E L+ D +F PC CG+++C FC RI +E+G CP CRKPY
Sbjct: 2 SCSPEVKEDPMECPLCMEPLEIDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 61
Query: 321 HD 322
D
Sbjct: 62 ED 63
>UNIPROTKB|E2QXU6 [details] [associations]
symbol:CNOT4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50089 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184
SMART:SM00360 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10
InterPro:IPR013083 CTD:4850 GeneTree:ENSGT00390000000068
EMBL:AAEX03010245 RefSeq:XP_859452.1 Ensembl:ENSCAFT00000005180
GeneID:482708 KEGG:cfa:482708 Uniprot:E2QXU6
Length = 572
Score = 170 (64.9 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRI-LEEDGRCPGCRKPYEHD 322
P CP+C E L+ D +F PC CG+++C FC RI +E+G CP CRKPY D
Sbjct: 11 PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63
>UNIPROTKB|O95628 [details] [associations]
symbol:CNOT4 "CCR4-NOT transcription complex subunit 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0051865 "protein autoubiquitination" evidence=IDA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA] [GO:0030014
"CCR4-NOT complex" evidence=IDA] [GO:0000288 "nuclear-transcribed
mRNA catabolic process, deadenylation-dependent decay"
evidence=TAS] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR001841 InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 PROSITE:PS50089 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00184 SMART:SM00360 UniPathway:UPA00143 Prosite:PS00518
GO:GO:0005829 GO:GO:0005634 GO:GO:0006355 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0051865 GO:GO:0000289 EMBL:U71267 EMBL:U71268
EMBL:AF180475 EMBL:AL389980 EMBL:AK074671 EMBL:AK300365
EMBL:AC083871 EMBL:AC074002 EMBL:BC035590 EMBL:AF091094
IPI:IPI00002436 IPI:IPI00410681 IPI:IPI00410682 IPI:IPI00410683
IPI:IPI00410684 IPI:IPI00410685 IPI:IPI00410686 IPI:IPI00925697
IPI:IPI01026266 RefSeq:NP_001008226.1 RefSeq:NP_001177776.1
RefSeq:NP_001177777.1 RefSeq:NP_001177779.1 RefSeq:NP_037448.2
UniGene:Hs.490224 PDB:1E4U PDB:1UR6 PDBsum:1E4U PDBsum:1UR6
ProteinModelPortal:O95628 SMR:O95628 IntAct:O95628 STRING:O95628
PhosphoSite:O95628 PaxDb:O95628 PRIDE:O95628
Ensembl:ENST00000315544 Ensembl:ENST00000356162
Ensembl:ENST00000361528 Ensembl:ENST00000414802
Ensembl:ENST00000423368 Ensembl:ENST00000428680
Ensembl:ENST00000451834 GeneID:4850 KEGG:hsa:4850 UCSC:uc003vss.3
UCSC:uc003vst.3 UCSC:uc003vsu.2 UCSC:uc003vsv.2 CTD:4850
GeneCards:GC07M135046 H-InvDB:HIX0007112 HGNC:HGNC:7880
HPA:HPA005737 MIM:604911 neXtProt:NX_O95628 PharmGKB:PA26675
eggNOG:COG5175 HOVERGEN:HBG051043 EvolutionaryTrace:O95628
GenomeRNAi:4850 NextBio:18678 ArrayExpress:O95628 Bgee:O95628
CleanEx:HS_CNOT4 Genevestigator:O95628 GermOnline:ENSG00000080802
Uniprot:O95628
Length = 575
Score = 170 (64.9 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRI-LEEDGRCPGCRKPYEHD 322
P CP+C E L+ D +F PC CG+++C FC RI +E+G CP CRKPY D
Sbjct: 11 PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63
>MGI|MGI:1859026 [details] [associations]
symbol:Cnot4 "CCR4-NOT transcription complex, subunit 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=ISO] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051865 "protein autoubiquitination"
evidence=ISO] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00360
MGI:MGI:1859026 Prosite:PS00518 GO:GO:0005634 GO:GO:0005737
GO:GO:0006355 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 KO:K10643
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 GO:GO:0051865
CTD:4850 eggNOG:COG5175 HOVERGEN:HBG051043 EMBL:U71269
EMBL:AK009234 EMBL:AK028190 EMBL:AK032248 EMBL:BC058778
IPI:IPI00130086 IPI:IPI00410929 IPI:IPI00410930
RefSeq:NP_001157883.1 RefSeq:NP_001157885.1 RefSeq:NP_058573.3
UniGene:Mm.214525 UniGene:Mm.398182 PDB:2CPI PDBsum:2CPI
ProteinModelPortal:Q8BT14 SMR:Q8BT14 STRING:Q8BT14
PhosphoSite:Q8BT14 PaxDb:Q8BT14 PRIDE:Q8BT14
Ensembl:ENSMUST00000044163 Ensembl:ENSMUST00000114993 GeneID:53621
KEGG:mmu:53621 UCSC:uc009bid.2 UCSC:uc009big.2
GeneTree:ENSGT00390000000068 HOGENOM:HOG000065696 ChiTaRS:CNOT4
EvolutionaryTrace:Q8BT14 NextBio:310353 Bgee:Q8BT14
CleanEx:MM_CNOT4 Genevestigator:Q8BT14
GermOnline:ENSMUSG00000038784 Uniprot:Q8BT14
Length = 575
Score = 170 (64.9 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRI-LEEDGRCPGCRKPYEHD 322
P CP+C E L+ D +F PC CG+++C FC RI +E+G CP CRKPY D
Sbjct: 11 PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63
>UNIPROTKB|D4ADF8 [details] [associations]
symbol:Cnot4 "RCG28297" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 PROSITE:PS50089 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00184 SMART:SM00360 RGD:1310318 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:3.30.40.10
InterPro:IPR013083 EMBL:CH473959 IPI:IPI00373484 UniGene:Rn.203387
Ensembl:ENSRNOT00000014392 Uniprot:D4ADF8
Length = 575
Score = 170 (64.9 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRI-LEEDGRCPGCRKPYEHD 322
P CP+C E L+ D +F PC CG+++C FC RI +E+G CP CRKPY D
Sbjct: 11 PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63
>UNIPROTKB|F1MWA7 [details] [associations]
symbol:CNOT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:3.30.40.10 InterPro:IPR013083
GeneTree:ENSGT00390000000068 OMA:KCRICPT EMBL:DAAA02011636
EMBL:DAAA02011637 EMBL:DAAA02011638 EMBL:DAAA02011639
IPI:IPI00708734 UniGene:Bt.26972 Ensembl:ENSBTAT00000023825
Uniprot:F1MWA7
Length = 642
Score = 170 (64.9 bits), Expect = 5.9e-10, P = 5.9e-10
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRI-LEEDGRCPGCRKPYEHD 322
P CP+C E L+ D +F PC CG+++C FC RI +E+G CP CRKPY D
Sbjct: 11 PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63
>UNIPROTKB|E2QXU7 [details] [associations]
symbol:CNOT4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50089 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184
SMART:SM00360 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:3.30.40.10
InterPro:IPR013083 GeneTree:ENSGT00390000000068 EMBL:AAEX03010245
Ensembl:ENSCAFT00000005178 Uniprot:E2QXU7
Length = 642
Score = 170 (64.9 bits), Expect = 5.9e-10, P = 5.9e-10
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRI-LEEDGRCPGCRKPYEHD 322
P CP+C E L+ D +F PC CG+++C FC RI +E+G CP CRKPY D
Sbjct: 11 PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63
>ZFIN|ZDB-GENE-090313-262 [details] [associations]
symbol:si:dkey-230e6.2 "si:dkey-230e6.2"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50089 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00184 SMART:SM00360
ZFIN:ZDB-GENE-090313-262 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10
InterPro:IPR013083 GeneTree:ENSGT00390000000068 OMA:KCRICPT
EMBL:CABZ01070060 EMBL:CR387984 IPI:IPI00487935 RefSeq:XP_697509.2
Ensembl:ENSDART00000034714 GeneID:569055 KEGG:dre:569055
NextBio:20889484 Uniprot:E7F2Q8
Length = 772
Score = 171 (65.3 bits), Expect = 6.0e-10, P = 6.0e-10
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRI-LEEDGRCPGCRKPYEHD 322
P CP+C E L+ D +F PC CG+++C FC RI +E+G CP CRKPY D
Sbjct: 11 PMECPLCMEPLEIDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63
>UNIPROTKB|E2QXU8 [details] [associations]
symbol:CNOT4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50089 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184
SMART:SM00360 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10
InterPro:IPR013083 CTD:4850 GeneTree:ENSGT00390000000068
EMBL:AAEX03010245 GeneID:482708 KEGG:cfa:482708 RefSeq:XP_859650.1
Ensembl:ENSCAFT00000005176 OMA:KCRICPT NextBio:20857244
Uniprot:E2QXU8
Length = 710
Score = 170 (64.9 bits), Expect = 6.9e-10, P = 6.9e-10
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRI-LEEDGRCPGCRKPYEHD 322
P CP+C E L+ D +F PC CG+++C FC RI +E+G CP CRKPY D
Sbjct: 11 PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63
>RGD|1310318 [details] [associations]
symbol:Cnot4 "CCR4-NOT transcription complex, subunit 4"
species:10116 "Rattus norvegicus" [GO:0004842 "ubiquitin-protein
ligase activity" evidence=ISO] [GO:0051865 "protein
autoubiquitination" evidence=ISO] [GO:0030014 "CCR4-NOT complex"
evidence=ISO] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00360
RGD:1310318 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10
InterPro:IPR013083 CTD:4850 eggNOG:COG5175 HOVERGEN:HBG051043
HOGENOM:HOG000065696 UniGene:Rn.203387 IPI:IPI00565508
EMBL:BC100152 RefSeq:NP_001032871.1 ProteinModelPortal:Q498M7
SMR:Q498M7 STRING:Q498M7 GeneID:312227 KEGG:rno:312227
UCSC:RGD:1310318 InParanoid:Q498M7 OrthoDB:EOG43BMNB NextBio:664680
Genevestigator:Q498M7 Uniprot:Q498M7
Length = 710
Score = 170 (64.9 bits), Expect = 6.9e-10, P = 6.9e-10
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRI-LEEDGRCPGCRKPYEHD 322
P CP+C E L+ D +F PC CG+++C FC RI +E+G CP CRKPY D
Sbjct: 11 PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63
>UNIPROTKB|F8VQP3 [details] [associations]
symbol:CNOT4 "CCR4-NOT transcription complex subunit 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50089 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184
SMART:SM00360 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10
InterPro:IPR013083 EMBL:AC083871 RefSeq:NP_001177779.1
UniGene:Hs.490224 GeneID:4850 KEGG:hsa:4850 CTD:4850 HGNC:HGNC:7880
GenomeRNAi:4850 NextBio:18678 EMBL:AC009331 IPI:IPI01011519
ProteinModelPortal:F8VQP3 SMR:F8VQP3 Ensembl:ENST00000541284
UCSC:uc011kpy.2 ArrayExpress:F8VQP3 Bgee:F8VQP3 Uniprot:F8VQP3
Length = 713
Score = 170 (64.9 bits), Expect = 6.9e-10, P = 6.9e-10
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRI-LEEDGRCPGCRKPYEHD 322
P CP+C E L+ D +F PC CG+++C FC RI +E+G CP CRKPY D
Sbjct: 11 PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63
>UNIPROTKB|F1MAD6 [details] [associations]
symbol:Cnot4 "Protein Cnot4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00360
RGD:1310318 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:3.30.40.10
InterPro:IPR013083 GeneTree:ENSGT00390000000068 OMA:KCRICPT
IPI:IPI00565508 PRIDE:F1MAD6 Ensembl:ENSRNOT00000040969
ArrayExpress:F1MAD6 Uniprot:F1MAD6
Length = 713
Score = 170 (64.9 bits), Expect = 6.9e-10, P = 6.9e-10
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRI-LEEDGRCPGCRKPYEHD 322
P CP+C E L+ D +F PC CG+++C FC RI +E+G CP CRKPY D
Sbjct: 11 PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63
>UNIPROTKB|Q5ZJC9 [details] [associations]
symbol:CNOT4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10 InterPro:IPR013083
CTD:4850 eggNOG:COG5175 HOVERGEN:HBG051043
GeneTree:ENSGT00390000000068 HOGENOM:HOG000065696 EMBL:AADN02005991
EMBL:AADN02005992 EMBL:AJ720505 IPI:IPI00580995
RefSeq:NP_001012829.1 UniGene:Gga.6842 SMR:Q5ZJC9 STRING:Q5ZJC9
Ensembl:ENSGALT00000019099 GeneID:417936 KEGG:gga:417936
NextBio:20821166 Uniprot:Q5ZJC9
Length = 762
Score = 170 (64.9 bits), Expect = 7.6e-10, P = 7.6e-10
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRI-LEEDGRCPGCRKPYEHD 322
P CP+C E L+ D +F PC CG+++C FC RI +E+G CP CRKPY D
Sbjct: 11 PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63
>UNIPROTKB|E1C4B3 [details] [associations]
symbol:CNOT4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:3.30.40.10 InterPro:IPR013083
GeneTree:ENSGT00390000000068 OMA:KCRICPT EMBL:AADN02005991
EMBL:AADN02005992 IPI:IPI00822866 Ensembl:ENSGALT00000038170
ArrayExpress:E1C4B3 Uniprot:E1C4B3
Length = 765
Score = 170 (64.9 bits), Expect = 7.7e-10, P = 7.7e-10
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRI-LEEDGRCPGCRKPYEHD 322
P CP+C E L+ D +F PC CG+++C FC RI +E+G CP CRKPY D
Sbjct: 11 PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63
>POMBASE|SPAC16C9.04c [details] [associations]
symbol:mot2 "CCR4-Not complex subunit Mot2 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISM] [GO:0004842
"ubiquitin-protein ligase activity" evidence=ISO] [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=ISO] [GO:0006402 "mRNA
catabolic process" evidence=IC] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=ISO]
[GO:0030014 "CCR4-NOT complex" evidence=ISO] [GO:0030015 "CCR4-NOT
core complex" evidence=NAS] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50089 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00184 SMART:SM00361 PomBase:SPAC16C9.04c Prosite:PS00518
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0006357
GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0006368 GO:GO:0004842 GO:GO:0000289 GO:GO:0030015
eggNOG:COG5175 HOGENOM:HOG000248860 OrthoDB:EOG42RHH7 PIR:T37777
RefSeq:NP_593078.1 ProteinModelPortal:Q09818 SMR:Q09818
STRING:Q09818 PRIDE:Q09818 EnsemblFungi:SPAC16C9.04c.1
GeneID:2542325 KEGG:spo:SPAC16C9.04c NextBio:20803386
Uniprot:Q09818
Length = 489
Score = 164 (62.8 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 25/53 (47%), Positives = 37/53 (69%)
Query: 274 CPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEE-DGRCPGCRKPYEHDQVE 325
CP+C E++D +D +F PC CG+R+C FC I E+ +GRCP CR+ Y + V+
Sbjct: 18 CPLCMEEIDISDKNFKPCQCGYRVCRFCWHHIKEDLNGRCPACRRLYTEENVQ 70
>SGD|S000000870 [details] [associations]
symbol:MOT2 "Ubiquitin-protein ligase subunit of the CCR4-NOT
complex" species:4932 "Saccharomyces cerevisiae" [GO:0000209
"protein polyubiquitination" evidence=IMP;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0016567 "protein ubiquitination" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0030015 "CCR4-NOT core complex" evidence=IPI]
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=IMP;IDA;IPI] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0031087 "deadenylation-independent decapping of
nuclear-transcribed mRNA" evidence=IMP] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR003954 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00361
SGD:S000000870 Prosite:PS00518 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 EMBL:BK006939
EMBL:U18813 RefSeq:NP_010991.3 GeneID:856799 KEGG:sce:YER068W
KO:K10643 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842
GO:GO:0000209 GO:GO:0032968 GO:GO:0030015 eggNOG:COG5175
GeneTree:ENSGT00390000000068 GO:GO:0031087 EMBL:M96736 EMBL:L26309
PIR:A56015 RefSeq:NP_010994.3 ProteinModelPortal:P34909 SMR:P34909
DIP:DIP-2255N IntAct:P34909 MINT:MINT-617490 STRING:P34909
PaxDb:P34909 PeptideAtlas:P34909 EnsemblFungi:YER068W GeneID:856802
KEGG:sce:YER071C CYGD:YER068w HOGENOM:HOG000248860 OMA:DEEDYCP
OrthoDB:EOG42RHH7 NextBio:983041 Genevestigator:P34909
GermOnline:YER068W Uniprot:P34909
Length = 587
Score = 161 (61.7 bits), Expect = 5.6e-09, P = 5.6e-09
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 274 CPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEE---DGRCPGCRKPYEHDQV 324
CP+C E +D TD +F PC CG+++C FC+ I + +GRCP CR+ Y+ + V
Sbjct: 33 CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNPELNGRCPACRRKYDDENV 86
>DICTYBASE|DDB_G0275005 [details] [associations]
symbol:DDB_G0275005 "putative CCR4-NOT complex
subunit 4" species:44689 "Dictyostelium discoideum" [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0030015 "CCR4-NOT
core complex" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF13639 PROSITE:PS50089 PROSITE:PS50102
SMART:SM00184 SMART:SM00360 dictyBase:DDB_G0275005 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AAFI02000012 KO:K10643 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0030015 eggNOG:COG5175 RefSeq:XP_644313.1
ProteinModelPortal:Q554L0 SMR:Q554L0 EnsemblProtists:DDB0237630
GeneID:8619741 KEGG:ddi:DDB_G0275005 OMA:QEHPHLP Uniprot:Q554L0
Length = 1486
Score = 161 (61.7 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 272 SSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILE-EDGRCPGCRKPYE 320
+SCP+C ++L D F PC CG+++C+FC +RI E E RCP CRK Y+
Sbjct: 6 NSCPLCLDELSKADRKFRPCPCGYQICVFCFERIRESEQNRCPACRKTYD 55
>TAIR|locus:2085617 [details] [associations]
symbol:AT3G45630 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50089 PROSITE:PS50102 SMART:SM00184
SMART:SM00360 GO:GO:0009506 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 KO:K10643 Gene3D:3.30.40.10 InterPro:IPR013083
eggNOG:COG5175 EMBL:AL138657 HSSP:O95628 HOGENOM:HOG000085071
IPI:IPI00541447 PIR:T47503 RefSeq:NP_190149.1 UniGene:At.36006
ProteinModelPortal:Q9M1E4 SMR:Q9M1E4 IntAct:Q9M1E4
MINT:MINT-1366149 PaxDb:Q9M1E4 PRIDE:Q9M1E4
EnsemblPlants:AT3G45630.1 GeneID:823705 KEGG:ath:AT3G45630
TAIR:At3g45630 InParanoid:Q9M1E4 OMA:KPSAVEN PhylomeDB:Q9M1E4
ProtClustDB:CLSN2684762 Genevestigator:Q9M1E4 Uniprot:Q9M1E4
Length = 989
Score = 156 (60.0 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 273 SCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRIL---EED---GRCPGCRKPYEHDQ--- 323
+CP+C E++D TD PC CG+++C++C I+ E+D GRCP CR PY+ ++
Sbjct: 8 TCPLCAEEMDLTDQQLKPCKCGYQICVWCWHHIMDMAEKDQSEGRCPACRTPYDKEKIVG 67
Query: 324 --VESEAIVQGGSM 335
V+ E + G+M
Sbjct: 68 MTVDQERLASEGNM 81
>WB|WBGene00003827 [details] [associations]
symbol:ntl-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0040017 "positive regulation of locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] InterPro:IPR001841
InterPro:IPR000504 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50089 PROSITE:PS50102 SMART:SM00361
GO:GO:0009792 GO:GO:0040010 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0040017 GO:GO:0000003 GO:GO:0003676
KO:K10643 Gene3D:3.30.40.10 InterPro:IPR013083
GeneTree:ENSGT00390000000068 EMBL:FO080908 HSSP:O95628
GeneID:177580 KEGG:cel:CELE_C49H3.5 UCSC:C49H3.5a CTD:177580
HOGENOM:HOG000021187 NextBio:897454 RefSeq:NP_741453.1
ProteinModelPortal:Q9GYQ9 SMR:Q9GYQ9 DIP:DIP-27225N IntAct:Q9GYQ9
MINT:MINT-1111747 STRING:Q9GYQ9 PRIDE:Q9GYQ9
EnsemblMetazoa:C49H3.5a.1 EnsemblMetazoa:C49H3.5a.2
WormBase:C49H3.5a InParanoid:Q9GYQ9 OMA:NSMLDGR ArrayExpress:Q9GYQ9
Uniprot:Q9GYQ9
Length = 796
Score = 154 (59.3 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 25/52 (48%), Positives = 34/52 (65%)
Query: 274 CPICYEDLDYTDSSFLPCLCGFRLCLFCHKRI-LEEDGRCPGCRKPYEHDQV 324
CP+C E L+ D +F PC C +++C FC RI +E+G CP CR+PY D V
Sbjct: 13 CPLCMETLELDDINFYPCKCEYQICRFCWHRIRTDENGLCPACRQPYPEDPV 64
>FB|FBgn0051716 [details] [associations]
symbol:Cnot4 "Cnot 4 homologue" species:7227 "Drosophila
melanogaster" [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0051297 "centrosome organization"
evidence=IMP] [GO:0046425 "regulation of JAK-STAT cascade"
evidence=IMP] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00360
EMBL:AE014134 GO:GO:0051297 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0003729 Gene3D:3.30.70.330 KO:K10643
Gene3D:3.30.40.10 InterPro:IPR013083 GeneTree:ENSGT00390000000068
GO:GO:0046425 HSSP:O95628 UniGene:Dm.18584 GeneID:34416
KEGG:dme:Dmel_CG31716 FlyBase:FBgn0051716 GenomeRNAi:34416
NextBio:788389 EMBL:BT003543 RefSeq:NP_723578.1 RefSeq:NP_723579.1
RefSeq:NP_723580.1 RefSeq:NP_723581.1 RefSeq:NP_723582.1 SMR:Q9VKX1
MINT:MINT-965323 STRING:Q9VKX1 EnsemblMetazoa:FBtr0080009
EnsemblMetazoa:FBtr0080010 EnsemblMetazoa:FBtr0080011
EnsemblMetazoa:FBtr0080012 EnsemblMetazoa:FBtr0080013
UCSC:CG31716-RA InParanoid:Q9VKX1 Uniprot:Q9VKX1
Length = 1051
Score = 152 (58.6 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 274 CPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGR-CPGCRKPYEHDQVESEAIVQG 332
CP+C E L+ D +F PC CG+++C FC RI ++ + CP CRK Y + + + + Q
Sbjct: 13 CPLCMEPLEVDDLTFFPCTCGYQICRFCWHRIRTDENKLCPACRKEYPENPADFKPLSQE 72
Query: 333 GSMTFR 338
+ F+
Sbjct: 73 EMIAFK 78
>TAIR|locus:2056563 [details] [associations]
symbol:AT2G28540 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50089
PROSITE:PS50102 SMART:SM00360 EMBL:CP002685 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 KO:K10643
Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AK228764 IPI:IPI00540319
RefSeq:NP_001031437.2 UniGene:At.38609 ProteinModelPortal:Q0WQD5
SMR:Q0WQD5 PRIDE:Q0WQD5 EnsemblPlants:AT2G28540.2 GeneID:817402
KEGG:ath:AT2G28540 TAIR:At2g28540 HOGENOM:HOG000085071
InParanoid:Q0WQD5 OMA:RIIANIM PhylomeDB:Q0WQD5
ProtClustDB:CLSN2681703 Genevestigator:Q0WQD5 Uniprot:Q0WQD5
Length = 960
Score = 145 (56.1 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 273 SCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILE------EDGRCPGCRKPYEHDQV 324
+CP+C E++D TD PC CG+++C++C I+E +GRCP CR Y+ +++
Sbjct: 8 TCPLCTEEMDLTDQHLKPCKCGYQICVWCWHHIIEMAEKDKTEGRCPACRTRYDKEKI 65
>CGD|CAL0000791 [details] [associations]
symbol:NOT4 species:5476 "Candida albicans" [GO:0009405
"pathogenesis" evidence=IMP] [GO:0030015 "CCR4-NOT core complex"
evidence=ISS] [GO:0000152 "nuclear ubiquitin ligase complex"
evidence=ISS] [GO:0016567 "protein ubiquitination" evidence=ISS]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:0036244 "cellular response to neutral pH" evidence=IMP]
[GO:0030447 "filamentous growth" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0036178 "filamentous growth of a
population of unicellular organisms in response to neutral pH"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0031087 "deadenylation-independent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0000209 "protein
polyubiquitination" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00360 CGD:CAL0000791 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0044011 EMBL:AACQ01000131 GO:GO:0000152
GO:GO:0030015 eggNOG:COG5175 RefSeq:XP_713212.1
ProteinModelPortal:Q59UI5 STRING:Q59UI5 GeneID:3645115
KEGG:cal:CaO19.2379 Uniprot:Q59UI5
Length = 553
Score = 136 (52.9 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 21/52 (40%), Positives = 35/52 (67%)
Query: 281 LDYTDSSFLPCLCGFRLCLFCHKRILEE---DGRCPGCRKPYEHDQVESEAI 329
+D +D +F PC CG+++C FC+ I + +GRCPGCR+ Y+ + VE + +
Sbjct: 1 MDISDKNFKPCPCGYQICQFCYNNIRQNPELNGRCPGCRRLYDDESVEYKTV 52
>UNIPROTKB|Q59UI5 [details] [associations]
symbol:NOT4 "Potential mRNA deadenylase and CCR4-NOT
complex subunit Mot2p" species:237561 "Candida albicans SC5314"
[GO:0000152 "nuclear ubiquitin ligase complex" evidence=ISS]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS]
[GO:0009405 "pathogenesis" evidence=IMP] [GO:0016567 "protein
ubiquitination" evidence=ISS] [GO:0030015 "CCR4-NOT core complex"
evidence=ISS] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0036178 "filamentous growth of a population of unicellular
organisms in response to neutral pH" evidence=IMP] [GO:0036180
"filamentous growth of a population of unicellular organisms in
response to biotic stimulus" evidence=IMP] [GO:0036244 "cellular
response to neutral pH" evidence=IMP] [GO:0044011 "single-species
biofilm formation on inanimate substrate" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00360
CGD:CAL0000791 GO:GO:0071216 GO:GO:0036244 GO:GO:0036180
GO:GO:0036178 GO:GO:0009405 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 KO:K10643
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 GO:GO:0044011
EMBL:AACQ01000131 GO:GO:0000152 GO:GO:0030015 eggNOG:COG5175
RefSeq:XP_713212.1 ProteinModelPortal:Q59UI5 STRING:Q59UI5
GeneID:3645115 KEGG:cal:CaO19.2379 Uniprot:Q59UI5
Length = 553
Score = 136 (52.9 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 21/52 (40%), Positives = 35/52 (67%)
Query: 281 LDYTDSSFLPCLCGFRLCLFCHKRILEE---DGRCPGCRKPYEHDQVESEAI 329
+D +D +F PC CG+++C FC+ I + +GRCPGCR+ Y+ + VE + +
Sbjct: 1 MDISDKNFKPCPCGYQICQFCYNNIRQNPELNGRCPGCRRLYDDESVEYKTV 52
>UNIPROTKB|H0YAI5 [details] [associations]
symbol:RNF4 "E3 ubiquitin-protein ligase RNF4" species:9606
"Homo sapiens" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
Prosite:PS00518 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 EMBL:AL110117 EMBL:AL645924
EMBL:BX322586 EMBL:CR450722 EMBL:CR545473 HGNC:HGNC:10067
ChiTaRS:RNF4 Ensembl:ENST00000508235 Uniprot:H0YAI5
Length = 106
Score = 80 (33.2 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 273 SCPIC---YEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHDQV 324
SCPIC Y ++ + CG C C + L+ CP CRK H ++
Sbjct: 47 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRL 101
Score = 39 (18.8 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 83 SNDSGSMHHDSDSESPSNSPTNSLLCGNSGTNP-GT 117
S+D + D D +++P N+ G +G P GT
Sbjct: 10 SSDDEELSRDRDVYVTTHTPRNARDEGATGLRPSGT 45
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.130 0.398 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 349 298 0.00094 115 3 11 23 0.44 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 28
No. of states in DFA: 613 (65 KB)
Total size of DFA: 234 KB (2127 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 29.95u 0.10s 30.05t Elapsed: 00:00:02
Total cpu time: 29.95u 0.10s 30.05t Elapsed: 00:00:02
Start: Fri May 10 07:22:35 2013 End: Fri May 10 07:22:37 2013