BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018850
(349 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O95628|CNOT4_HUMAN CCR4-NOT transcription complex subunit 4 OS=Homo sapiens GN=CNOT4
PE=1 SV=3
Length = 575
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRI-LEEDGRCPGCRKPYEHDQVESEAI 329
P CP+C E L+ D +F PC CG+++C FC RI +E+G CP CRKPY D + +
Sbjct: 11 PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYKPL 70
Query: 330 VQ 331
Q
Sbjct: 71 SQ 72
>sp|Q8BT14|CNOT4_MOUSE CCR4-NOT transcription complex subunit 4 OS=Mus musculus GN=Cnot4
PE=1 SV=2
Length = 575
Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRI-LEEDGRCPGCRKPYEHDQVESEAI 329
P CP+C E L+ D +F PC CG+++C FC RI +E+G CP CRKPY D + +
Sbjct: 11 PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYKPL 70
Query: 330 VQ 331
Q
Sbjct: 71 SQ 72
>sp|Q09818|YAC4_SCHPO Putative general negative regulator of transcription C16C9.04c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC16C9.04c PE=3 SV=1
Length = 489
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Query: 274 CPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEE-DGRCPGCRKPYEHDQVE 325
CP+C E++D +D +F PC CG+R+C FC I E+ +GRCP CR+ Y + V+
Sbjct: 18 CPLCMEEIDISDKNFKPCQCGYRVCRFCWHHIKEDLNGRCPACRRLYTEENVQ 70
>sp|P34909|NOT4_YEAST General negative regulator of transcription subunit 4
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=MOT2 PE=1 SV=1
Length = 587
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Query: 274 CPICYEDLDYTDSSFLPCLCGFRLCLFCHKRIL---EEDGRCPGCRKPYEHDQV 324
CP+C E +D TD +F PC CG+++C FC+ I E +GRCP CR+ Y+ + V
Sbjct: 33 CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNPELNGRCPACRRKYDDENV 86
>sp|Q8W3F9|CSLD1_ORYSJ Cellulose synthase-like protein D1 OS=Oryza sativa subsp. japonica
GN=CSLD1 PE=2 SV=1
Length = 1127
Score = 42.4 bits (98), Expect = 0.005, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 286 SSFLPCLCGFRLCLFCHKRILEEDGR-CPGCRKPYEHDQVE 325
+ LPC C F++C+ C ++ G CPGC++PY+H + E
Sbjct: 127 ADILPCECDFKICVDCFTDAVKGGGGVCPGCKEPYKHAEWE 167
>sp|A2ZAK8|CSLD1_ORYSI Cellulose synthase-like protein D1 OS=Oryza sativa subsp. indica
GN=CSLD1 PE=2 SV=2
Length = 1127
Score = 42.4 bits (98), Expect = 0.005, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 286 SSFLPCLCGFRLCLFCHKRILEEDGR-CPGCRKPYEHDQVE 325
+ LPC C F++C+ C ++ G CPGC++PY+H + E
Sbjct: 127 ADILPCECDFKICVDCFTDAVKGGGGVCPGCKEPYKHAEWE 167
>sp|Q9Y7K6|YGI4_SCHPO Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC2A9.04c PE=4 SV=1
Length = 741
Score = 40.0 bits (92), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 273 SCPICYEDLDYTD---SSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHDQVES 326
+CPICY+D++ D ++ +PC G C ++ LE CP CRK H+ V S
Sbjct: 106 TCPICYDDMNENDEKQATKMPC--GHIFGKNCLQKWLENHCTCPLCRKEVPHETVGS 160
>sp|Q8TEC5|SH3R2_HUMAN Putative E3 ubiquitin-protein ligase SH3RF2 OS=Homo sapiens
GN=SH3RF2 PE=1 SV=3
Length = 729
Score = 40.0 bits (92), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 274 CPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILE--EDGRCPGCRKP 318
CP+C+E LD T + LPC F C C +R+ + ++ RCP CR P
Sbjct: 12 CPVCFEKLDVT-AKVLPCQHTF--CKPCLQRVFKAHKELRCPECRTP 55
>sp|A2YU42|CSLD2_ORYSI Cellulose synthase-like protein D2 OS=Oryza sativa subsp. indica
GN=CSLD2 PE=3 SV=1
Length = 1170
Score = 39.3 bits (90), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 288 FLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHDQVE 325
LPC C F++C C ++ G CPGC+ PY+ +++
Sbjct: 164 ILPCECDFKICADCFADAVKNGGACPGCKDPYKATELD 201
>sp|Q9LHZ7|CSLD2_ORYSJ Cellulose synthase-like protein D2 OS=Oryza sativa subsp. japonica
GN=CSLD2 PE=2 SV=1
Length = 1170
Score = 39.3 bits (90), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 288 FLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHDQVE 325
LPC C F++C C ++ G CPGC+ PY+ +++
Sbjct: 164 ILPCECDFKICADCFADAVKNGGACPGCKDPYKATELD 201
>sp|Q9M9M4|CSLD3_ARATH Cellulose synthase-like protein D3 OS=Arabidopsis thaliana GN=CSLD3
PE=1 SV=1
Length = 1145
Score = 39.3 bits (90), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 288 FLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHDQVESEA 328
LPC C F++C C ++ G CPGC++PY + + A
Sbjct: 148 LLPCECDFKICRDCFMDAVKTGGMCPGCKEPYRNTDLADFA 188
>sp|Q5UPZ3|YR311_MIMIV Putative RING finger protein R311 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R311 PE=4 SV=1
Length = 659
Score = 38.1 bits (87), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 274 CPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKP 318
CP+CY+D DY + + CG +CL C IL CP C +P
Sbjct: 502 CPVCYDD-DYIKTKLI---CGHTVCLTCVLNILPNSKGCPLCMEP 542
>sp|Q18DN4|HMU_HALWD Halomucin OS=Haloquadratum walsbyi (strain DSM 16790) GN=hmu PE=4
SV=1
Length = 9159
Score = 37.0 bits (84), Expect = 0.21, Method: Composition-based stats.
Identities = 36/160 (22%), Positives = 60/160 (37%), Gaps = 15/160 (9%)
Query: 79 DEDNSNDSGSMHHDSDSESPSNSPTNSLLCGNSGTNPGTNFIGSSSSSSSVSGSSGGGCC 138
++D+ +DS S + D D+ S +S +S + G N G SSS + G +
Sbjct: 8394 NQDSGDDSSSQNDDGDNSSNQDSGDDSSSQNDDGDNSSNQDSGDDSSSQNDDGDNSSNQD 8453
Query: 139 SGSITEEEEEDGCLDDWEAVADALAADDDNNKQEPEHDRSCSQSPSESQLSVKSDSLHEL 198
SG + + +DG DD++ Q + D S +Q + S D +
Sbjct: 8454 SGDDSSSQNDDG---------------DDSSSQNDDGDNSSNQDSGDDSSSQNDDGDNSS 8498
Query: 199 ANGLSLDSVKSMPDGARMVPSVSENNRRAWRPDDAFRPQS 238
DS DG S ++ + D +P S
Sbjct: 8499 NQDSGDDSSSQNDDGDNSSNQDSGDDSSSQNDDGDNKPNS 8538
Score = 33.1 bits (74), Expect = 3.3, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 6/123 (4%)
Query: 60 DQNGARKESARSLENLKPRDEDNSNDSGSMHHDSDSESPSNSPTNSLLCGNSGTNPGTNF 119
+Q+ S+++ + ++D+ +DS S + D D+ S +S +S + G N
Sbjct: 8394 NQDSGDDSSSQNDDGDNSSNQDSGDDSSSQNDDGDNSSNQDSGDDSSSQNDDGDNSSNQD 8453
Query: 120 IGSSSSSSSVSGSSGGGCCSGSITEEEEEDGCLDDWEAVADALAADDDNNKQEPEHDRSC 179
G SSS + G ++ G DD + D D DN+ + D S
Sbjct: 8454 SGDDSSSQNDDGDDSSSQNDDGDNSSNQDSG--DDSSSQND----DGDNSSNQDSGDDSS 8507
Query: 180 SQS 182
SQ+
Sbjct: 8508 SQN 8510
>sp|Q9LFL0|CSLD2_ARATH Cellulose synthase-like protein D2 OS=Arabidopsis thaliana GN=CSLD2
PE=1 SV=1
Length = 1145
Score = 35.8 bits (81), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 10/68 (14%)
Query: 288 FLPCLCGFRLCLFCHKRILEEDG-RCPGCRKPYEH----DQV----ESEAIVQGGSMTFR 338
LPC C F++C C ++ G CPGC++PY++ DQV + ++ GG + +
Sbjct: 146 LLPCECDFKICRDCFIDAVKTGGGICPGCKEPYKNTHLTDQVDENGQQRPMLPGGGGS-K 204
Query: 339 LARSCSMI 346
+ R SM+
Sbjct: 205 MERRLSMV 212
>sp|Q9SZL9|CSLD4_ARATH Cellulose synthase-like protein D4 OS=Arabidopsis thaliana GN=CSLD4
PE=2 SV=1
Length = 1111
Score = 35.4 bits (80), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 289 LPCLCGFRLCLFCHKRILEEDGRCPGCRKPYE 320
+PC C F++C C +E G CPGC++ Y+
Sbjct: 134 MPCECRFKICRDCFMDAQKETGLCPGCKEQYK 165
>sp|Q9SRW9|CSLD5_ARATH Cellulose synthase-like protein D5 OS=Arabidopsis thaliana GN=CSLD5
PE=2 SV=1
Length = 1181
Score = 35.0 bits (79), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 291 CLCGFRLCLFCHKR-ILEEDGRCPGCRKPY 319
C CGFR+C C+ I G CPGC++PY
Sbjct: 176 CECGFRICRDCYFDCITSGGGNCPGCKEPY 205
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.127 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137,488,254
Number of Sequences: 539616
Number of extensions: 6052691
Number of successful extensions: 31996
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 506
Number of HSP's that attempted gapping in prelim test: 24733
Number of HSP's gapped (non-prelim): 4362
length of query: 349
length of database: 191,569,459
effective HSP length: 118
effective length of query: 231
effective length of database: 127,894,771
effective search space: 29543692101
effective search space used: 29543692101
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)