Query 018850
Match_columns 349
No_of_seqs 110 out of 150
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 04:33:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018850.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018850hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2068 MOT2 transcription fac 100.0 2.8E-41 6.1E-46 324.5 6.9 312 1-349 3-327 (327)
2 COG5175 MOT2 Transcriptional r 99.9 6.8E-23 1.5E-27 200.4 3.2 60 270-329 13-73 (480)
3 PF14570 zf-RING_4: RING/Ubox 99.8 5.6E-22 1.2E-26 146.0 2.8 47 274-320 1-48 (48)
4 PF13639 zf-RING_2: Ring finge 98.3 2.7E-07 5.8E-12 64.4 0.9 44 272-316 1-44 (44)
5 PF13920 zf-C3HC4_3: Zinc fing 98.1 2.2E-06 4.7E-11 61.4 2.9 47 271-321 2-49 (50)
6 cd00162 RING RING-finger (Real 98.1 3.2E-06 7E-11 55.7 3.0 44 273-319 1-45 (45)
7 PF14634 zf-RING_5: zinc-RING 98.1 3.3E-06 7.1E-11 59.5 3.0 44 273-317 1-44 (44)
8 PF13923 zf-C3HC4_2: Zinc fing 97.7 1.6E-05 3.5E-10 54.5 2.0 39 274-315 1-39 (39)
9 PHA02929 N1R/p28-like protein; 97.7 2.8E-05 6.1E-10 73.4 4.2 51 270-320 173-227 (238)
10 KOG2177 Predicted E3 ubiquitin 97.5 4.9E-05 1.1E-09 64.2 1.8 45 269-317 11-55 (386)
11 PF00097 zf-C3HC4: Zinc finger 97.4 8E-05 1.7E-09 50.7 1.9 39 274-315 1-41 (41)
12 KOG0320 Predicted E3 ubiquitin 97.4 8.9E-05 1.9E-09 68.3 2.4 52 271-324 131-182 (187)
13 smart00504 Ubox Modified RING 97.3 0.00029 6.3E-09 51.2 4.3 48 272-323 2-49 (63)
14 smart00184 RING Ring finger. E 97.3 0.00019 4E-09 45.6 2.8 38 274-315 1-39 (39)
15 PLN03208 E3 ubiquitin-protein 97.3 0.0002 4.3E-09 66.3 3.9 51 270-324 17-83 (193)
16 PF13445 zf-RING_UBOX: RING-ty 97.3 0.00016 3.5E-09 52.2 2.4 39 274-313 1-43 (43)
17 TIGR00570 cdk7 CDK-activating 97.2 0.00031 6.7E-09 68.9 4.3 54 271-324 3-58 (309)
18 TIGR00599 rad18 DNA repair pro 97.2 0.00013 2.8E-09 73.4 1.6 53 268-324 23-75 (397)
19 PF15227 zf-C3HC4_4: zinc fing 96.9 0.00054 1.2E-08 48.6 2.1 38 274-315 1-42 (42)
20 PHA02926 zinc finger-like prot 96.9 0.00061 1.3E-08 64.9 2.9 54 267-320 166-230 (242)
21 PLN02189 cellulose synthase 96.8 0.00058 1.2E-08 75.6 2.3 50 271-320 34-87 (1040)
22 PLN02436 cellulose synthase A 96.5 0.0017 3.7E-08 72.2 3.5 50 271-320 36-89 (1094)
23 KOG3002 Zn finger protein [Gen 96.4 0.0023 5.1E-08 62.3 3.0 45 270-320 47-91 (299)
24 PF12678 zf-rbx1: RING-H2 zinc 96.4 0.0029 6.3E-08 49.3 2.9 46 271-316 19-73 (73)
25 PLN02248 cellulose synthase-li 95.3 0.012 2.7E-07 65.9 3.3 40 286-325 143-182 (1135)
26 COG5243 HRD1 HRD ubiquitin lig 95.3 0.014 2.9E-07 59.7 3.2 52 268-319 284-344 (491)
27 PF12861 zf-Apc11: Anaphase-pr 95.2 0.017 3.7E-07 47.7 3.1 57 262-320 14-82 (85)
28 KOG0802 E3 ubiquitin ligase [P 95.2 0.0093 2E-07 61.3 1.7 58 267-324 287-345 (543)
29 PF14569 zf-UDP: Zinc-binding 95.2 0.019 4E-07 47.2 3.0 51 271-321 9-63 (80)
30 KOG4185 Predicted E3 ubiquitin 95.1 0.016 3.5E-07 54.1 2.9 49 271-319 3-54 (296)
31 KOG0287 Postreplication repair 94.8 0.0073 1.6E-07 61.0 -0.3 56 270-329 22-77 (442)
32 KOG0824 Predicted E3 ubiquitin 94.7 0.024 5.2E-07 56.2 3.0 53 269-325 5-58 (324)
33 COG5574 PEX10 RING-finger-cont 94.6 0.02 4.4E-07 55.6 2.3 51 270-324 214-266 (271)
34 KOG0311 Predicted E3 ubiquitin 94.5 0.0044 9.4E-08 62.4 -2.7 49 269-320 41-90 (381)
35 KOG2164 Predicted E3 ubiquitin 94.4 0.036 7.9E-07 57.9 3.8 56 270-329 185-245 (513)
36 COG5432 RAD18 RING-finger-cont 94.1 0.024 5.3E-07 56.4 1.7 49 270-322 24-72 (391)
37 KOG0317 Predicted E3 ubiquitin 93.8 0.054 1.2E-06 53.3 3.4 50 270-324 238-288 (293)
38 PF11793 FANCL_C: FANCL C-term 93.7 0.033 7.1E-07 43.4 1.5 50 271-320 2-66 (70)
39 PF04641 Rtf2: Rtf2 RING-finge 93.4 0.067 1.5E-06 50.3 3.2 54 270-324 112-165 (260)
40 PF04564 U-box: U-box domain; 93.4 0.065 1.4E-06 41.5 2.5 50 271-324 4-54 (73)
41 COG5540 RING-finger-containing 93.3 0.042 9.1E-07 55.0 1.8 51 269-320 321-372 (374)
42 PLN02400 cellulose synthase 92.8 0.071 1.5E-06 59.9 2.8 49 272-320 37-89 (1085)
43 PLN02638 cellulose synthase A 92.0 0.12 2.7E-06 58.1 3.3 49 272-320 18-70 (1079)
44 KOG0297 TNF receptor-associate 91.9 0.11 2.4E-06 51.9 2.6 53 268-323 18-70 (391)
45 KOG3800 Predicted E3 ubiquitin 91.8 0.098 2.1E-06 51.6 2.1 55 273-327 2-58 (300)
46 PLN02195 cellulose synthase A 91.1 0.17 3.6E-06 56.6 3.2 50 271-320 6-59 (977)
47 KOG4172 Predicted E3 ubiquitin 91.0 0.067 1.4E-06 42.0 0.1 47 271-321 7-55 (62)
48 KOG0978 E3 ubiquitin ligase in 90.1 0.15 3.3E-06 55.1 1.7 52 269-324 641-693 (698)
49 PF05290 Baculo_IE-1: Baculovi 90.1 0.25 5.5E-06 44.3 2.8 52 271-324 80-136 (140)
50 COG5222 Uncharacterized conser 89.8 0.23 5E-06 50.0 2.6 43 269-317 272-318 (427)
51 PLN02915 cellulose synthase A 89.8 0.25 5.4E-06 55.6 3.1 50 271-320 15-68 (1044)
52 COG5236 Uncharacterized conser 89.8 0.16 3.4E-06 51.9 1.4 48 271-322 61-110 (493)
53 KOG2879 Predicted E3 ubiquitin 89.6 0.3 6.4E-06 48.3 3.2 52 266-320 234-287 (298)
54 KOG0804 Cytoplasmic Zn-finger 89.3 0.17 3.7E-06 52.6 1.4 51 269-321 173-223 (493)
55 KOG4628 Predicted E3 ubiquitin 88.3 0.27 5.9E-06 49.4 1.9 48 272-320 230-278 (348)
56 KOG0823 Predicted E3 ubiquitin 87.1 0.58 1.2E-05 44.9 3.2 54 268-325 44-100 (230)
57 KOG4265 Predicted E3 ubiquitin 86.8 0.32 7E-06 49.0 1.5 47 270-321 289-337 (349)
58 KOG4159 Predicted E3 ubiquitin 86.2 0.46 9.9E-06 48.5 2.2 54 267-324 80-133 (398)
59 KOG1941 Acetylcholine receptor 85.1 0.32 7E-06 50.3 0.6 52 269-320 363-416 (518)
60 COG5219 Uncharacterized conser 83.7 0.35 7.5E-06 54.6 0.1 51 269-319 1467-1522(1525)
61 PHA02825 LAP/PHD finger-like p 83.7 1 2.2E-05 41.4 3.0 48 269-322 6-61 (162)
62 KOG3039 Uncharacterized conser 83.1 1.3 2.7E-05 43.7 3.6 57 270-326 220-276 (303)
63 KOG0828 Predicted E3 ubiquitin 83.0 0.68 1.5E-05 49.1 1.9 52 269-320 569-634 (636)
64 KOG1812 Predicted E3 ubiquitin 83.0 0.65 1.4E-05 46.7 1.7 46 270-315 145-196 (384)
65 KOG1785 Tyrosine kinase negati 81.6 0.63 1.4E-05 48.4 1.0 46 271-320 369-416 (563)
66 COG5216 Uncharacterized conser 81.4 0.6 1.3E-05 37.2 0.6 28 288-316 22-51 (67)
67 PF08274 PhnA_Zn_Ribbon: PhnA 80.7 0.66 1.4E-05 31.8 0.5 27 271-297 2-29 (30)
68 KOG1001 Helicase-like transcri 79.9 0.56 1.2E-05 50.5 0.0 48 272-324 455-504 (674)
69 KOG1039 Predicted E3 ubiquitin 78.8 1.4 3E-05 44.4 2.3 52 269-320 159-221 (344)
70 PF07191 zinc-ribbons_6: zinc- 77.9 0.34 7.4E-06 39.0 -1.7 41 272-321 2-42 (70)
71 PF12906 RINGv: RING-variant d 77.9 1.5 3.3E-05 31.9 1.7 41 274-315 1-47 (47)
72 COG5220 TFB3 Cdk activating ki 76.6 1 2.2E-05 44.3 0.7 50 270-319 9-63 (314)
73 KOG3161 Predicted E3 ubiquitin 76.2 0.92 2E-05 49.5 0.3 41 271-313 11-51 (861)
74 KOG0825 PHD Zn-finger protein 74.2 2.5 5.3E-05 47.3 2.8 53 271-324 123-175 (1134)
75 smart00744 RINGv The RING-vari 73.3 4 8.7E-05 29.9 3.0 44 273-316 1-49 (49)
76 KOG4692 Predicted E3 ubiquitin 73.3 2.4 5.2E-05 43.8 2.4 49 269-321 420-468 (489)
77 KOG2857 Predicted MYND Zn-fing 72.8 1.9 4.1E-05 39.4 1.3 26 291-319 2-27 (157)
78 KOG0826 Predicted E3 ubiquitin 71.9 2.5 5.5E-05 42.8 2.1 40 270-315 299-341 (357)
79 PF14447 Prok-RING_4: Prokaryo 71.7 2.4 5.1E-05 32.9 1.5 34 289-324 21-54 (55)
80 PF10571 UPF0547: Uncharacteri 71.1 2.6 5.7E-05 27.8 1.4 21 273-296 2-23 (26)
81 KOG2923 Uncharacterized conser 69.7 2.3 4.9E-05 34.2 1.0 31 285-316 19-51 (67)
82 PF14835 zf-RING_6: zf-RING of 67.5 4.2 9.2E-05 32.5 2.1 50 271-325 7-56 (65)
83 TIGR00143 hypF [NiFe] hydrogen 64.6 0.97 2.1E-05 48.9 -2.6 49 270-320 67-129 (711)
84 KOG1815 Predicted E3 ubiquitin 62.8 7.8 0.00017 39.3 3.6 57 269-328 68-134 (444)
85 KOG3005 GIY-YIG type nuclease 61.5 7.1 0.00015 38.6 2.9 53 271-323 182-246 (276)
86 PF05605 zf-Di19: Drought indu 60.5 3.6 7.8E-05 30.2 0.5 38 271-319 2-41 (54)
87 COG5194 APC11 Component of SCF 60.4 7.8 0.00017 32.6 2.5 46 271-320 31-81 (88)
88 KOG3579 Predicted E3 ubiquitin 59.5 4.4 9.5E-05 40.8 1.1 37 269-307 266-305 (352)
89 PHA02862 5L protein; Provision 59.5 7.1 0.00015 35.8 2.3 44 272-321 3-54 (156)
90 KOG4185 Predicted E3 ubiquitin 59.2 1.8 4E-05 40.6 -1.5 48 271-318 207-265 (296)
91 KOG1812 Predicted E3 ubiquitin 57.0 5.2 0.00011 40.4 1.1 47 269-315 304-351 (384)
92 KOG0827 Predicted E3 ubiquitin 56.3 7.7 0.00017 40.5 2.2 46 271-317 4-53 (465)
93 KOG1493 Anaphase-promoting com 52.1 4.6 0.0001 33.7 -0.1 25 296-320 49-81 (84)
94 PRK11595 DNA utilization prote 51.5 14 0.00031 34.0 3.0 41 271-320 5-45 (227)
95 PF02318 FYVE_2: FYVE-type zin 51.4 8.5 0.00019 32.4 1.4 48 270-317 53-102 (118)
96 PF14169 YdjO: Cold-inducible 50.5 10 0.00022 29.8 1.6 27 258-284 25-52 (59)
97 KOG3842 Adaptor protein Pellin 50.2 36 0.00078 35.1 5.7 96 233-332 288-426 (429)
98 KOG4362 Transcriptional regula 48.8 5.1 0.00011 43.8 -0.4 48 270-321 20-70 (684)
99 COG0068 HypF Hydrogenase matur 48.7 9.4 0.0002 42.2 1.5 31 266-296 96-132 (750)
100 PHA03096 p28-like protein; Pro 48.1 12 0.00025 36.9 1.9 47 272-318 179-232 (284)
101 KOG1842 FYVE finger-containing 47.6 7 0.00015 41.2 0.4 46 257-306 169-215 (505)
102 PF01485 IBR: IBR domain; Int 47.0 8.5 0.00018 27.6 0.7 31 272-302 19-55 (64)
103 KOG0801 Predicted E3 ubiquitin 46.0 7.3 0.00016 36.6 0.2 28 269-296 175-203 (205)
104 COG5152 Uncharacterized conser 44.3 11 0.00024 36.4 1.2 46 269-318 194-239 (259)
105 PF10367 Vps39_2: Vacuolar sor 44.1 12 0.00026 29.3 1.1 35 268-304 75-109 (109)
106 PF15616 TerY-C: TerY-C metal 41.3 13 0.00029 33.0 1.1 45 266-320 72-116 (131)
107 KOG1952 Transcription factor N 41.1 15 0.00034 41.4 1.8 59 269-327 189-254 (950)
108 PF12773 DZR: Double zinc ribb 40.9 27 0.00059 24.7 2.5 38 274-321 1-41 (50)
109 PF03854 zf-P11: P-11 zinc fin 40.2 12 0.00026 28.7 0.6 27 294-320 20-46 (50)
110 PF14768 RPA_interact_C: Repli 39.0 21 0.00045 28.6 1.8 28 273-300 1-28 (82)
111 PF04423 Rad50_zn_hook: Rad50 38.3 8.4 0.00018 28.3 -0.5 17 308-324 19-35 (54)
112 COG3813 Uncharacterized protei 38.1 31 0.00067 28.7 2.7 48 272-321 6-53 (84)
113 smart00647 IBR In Between Ring 37.8 14 0.00029 26.6 0.5 30 273-302 20-55 (64)
114 PF15325 MRI: Modulator of ret 36.8 52 0.0011 28.7 3.9 36 112-148 59-94 (106)
115 TIGR00686 phnA alkylphosphonat 36.3 20 0.00042 31.4 1.3 25 272-296 3-28 (109)
116 KOG4739 Uncharacterized protei 36.1 17 0.00037 35.1 1.1 42 274-319 6-47 (233)
117 PF12660 zf-TFIIIC: Putative z 35.7 7.6 0.00017 32.3 -1.2 51 271-321 14-67 (99)
118 KOG4275 Predicted E3 ubiquitin 35.4 8.9 0.00019 38.8 -1.0 36 274-317 303-339 (350)
119 KOG2231 Predicted E3 ubiquitin 35.2 29 0.00063 38.1 2.7 48 273-324 2-56 (669)
120 PRK11088 rrmA 23S rRNA methylt 34.4 22 0.00047 33.1 1.4 25 272-297 3-27 (272)
121 PF11781 RRN7: RNA polymerase 33.8 19 0.00042 25.3 0.7 26 272-297 9-35 (36)
122 COG4357 Zinc finger domain con 33.7 29 0.00063 30.1 1.9 26 297-322 64-93 (105)
123 PF01049 Cadherin_C: Cadherin 31.9 16 0.00035 32.2 0.1 36 121-162 107-142 (149)
124 PRK10220 hypothetical protein; 31.4 29 0.00063 30.4 1.6 26 271-296 3-29 (111)
125 PF06906 DUF1272: Protein of u 30.1 75 0.0016 25.1 3.5 47 271-319 5-51 (57)
126 PF14446 Prok-RING_1: Prokaryo 29.8 18 0.0004 27.9 0.1 23 298-320 8-32 (54)
127 KOG1940 Zn-finger protein [Gen 29.6 37 0.00081 33.6 2.2 47 271-317 158-204 (276)
128 smart00064 FYVE Protein presen 29.5 47 0.001 24.7 2.3 42 262-306 4-45 (68)
129 PHA03308 transcriptional regul 27.4 38 0.00081 38.4 1.9 15 301-315 1421-1438(1463)
130 PF04710 Pellino: Pellino; In 27.4 21 0.00046 37.2 0.1 64 259-322 315-403 (416)
131 PF02891 zf-MIZ: MIZ/SP-RING z 27.3 32 0.00069 25.4 1.0 44 271-318 2-50 (50)
132 PF13248 zf-ribbon_3: zinc-rib 27.1 44 0.00095 21.5 1.5 11 273-283 4-14 (26)
133 PF11789 zf-Nse: Zinc-finger o 26.9 40 0.00087 25.6 1.5 42 270-314 10-53 (57)
134 PF02977 CarbpepA_inh: Carboxy 26.9 18 0.00039 27.4 -0.4 17 288-304 9-30 (46)
135 PF11596 DUF3246: Protein of u 26.4 35 0.00076 33.3 1.3 13 122-134 226-238 (241)
136 PF09986 DUF2225: Uncharacteri 26.2 35 0.00076 31.7 1.3 14 270-283 4-17 (214)
137 KOG4367 Predicted Zn-finger pr 25.9 32 0.00068 36.9 1.0 33 270-306 3-35 (699)
138 PF05502 Dynactin_p62: Dynacti 25.2 24 0.00051 36.9 -0.0 58 271-328 26-105 (483)
139 KOG4080 Mitochondrial ribosoma 24.8 46 0.00099 31.2 1.7 25 271-306 93-117 (176)
140 PRK03681 hypA hydrogenase nick 24.7 35 0.00077 28.9 1.0 23 270-292 69-91 (114)
141 PF05876 Terminase_GpA: Phage 24.0 32 0.0007 36.2 0.7 13 310-322 230-242 (557)
142 KOG1571 Predicted E3 ubiquitin 23.5 48 0.001 34.1 1.7 47 266-320 300-347 (355)
143 KOG1645 RING-finger-containing 22.5 61 0.0013 34.2 2.3 49 270-318 3-54 (463)
144 PF10272 Tmpp129: Putative tra 22.5 58 0.0013 33.2 2.1 31 289-319 307-350 (358)
145 PHA00370 III attachment protei 22.5 2.3E+02 0.0049 28.6 6.0 41 128-169 122-166 (297)
146 PRK04023 DNA polymerase II lar 21.3 76 0.0017 36.9 2.9 48 267-321 622-675 (1121)
147 KOG1538 Uncharacterized conser 21.2 34 0.00073 38.4 0.2 35 271-321 1044-1078(1081)
148 PF04360 Serglycin: Serglycin 21.1 52 0.0011 30.2 1.3 11 138-148 107-117 (150)
149 PF07282 OrfB_Zn_ribbon: Putat 20.7 81 0.0017 23.6 2.1 27 270-296 27-55 (69)
150 PF14471 DUF4428: Domain of un 20.1 87 0.0019 23.4 2.1 30 273-305 1-30 (51)
No 1
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=100.00 E-value=2.8e-41 Score=324.45 Aligned_cols=312 Identities=42% Similarity=0.616 Sum_probs=215.4
Q ss_pred CCcccccccCCCCCCCCCcchhhhhcccchhhhhhhhhhhhhhhHhhhhhhccccccccccCCcc-cccccc-ccccCCC
Q 018850 1 MVSDSITHNAPIASAPNSRDFSKKKRTNRSAKLKQCKLDVRREQWLSQVGAVKSKCCKEDQNGAR-KESARS-LENLKPR 78 (349)
Q Consensus 1 M~~Dsi~~~a~~~aa~~srd~~KKKR~NrSAKLKQ~KlDaRREQWLSQv~avK~k~~k~~~~~~~-~~~~~~-~~~~~~r 78 (349)
||.|++.+... ..++ + |||+.|+++|+||.||+.||+||++|| ++||++-|++..--+ ....++ +..+-+=
T Consensus 3 qIc~~cwh~i~-~~~~---~--~grcpncr~ky~e~ki~~r~~~~~~l~-~~~n~~kk~e~e~k~~~~s~r~~ls~~rvV 75 (327)
T KOG2068|consen 3 QICDSCWHHIA-TSAE---K--KGRCPNCRTKYKEEKIVLRRVQWESLV-AEKNKEKKKEQEIKRKLSSNRKHLSGVRVV 75 (327)
T ss_pred eeeHHHHhccc-cccc---c--ccCCccccCccchhhhccccccHHHHH-HhhhhhhhhHHHHhhhhhhcccccccchhh
Confidence 67788877522 2332 2 899999999999999999999999999 777777776554332 111111 2222211
Q ss_pred CCCCCCCCCCC---cCCCCCCCCCCCCCCCcCCCCCCCCCCCcccCCCCCCCcccCCCCCccccCCcchhccc--cCccc
Q 018850 79 DEDNSNDSGSM---HHDSDSESPSNSPTNSLLCGNSGTNPGTNFIGSSSSSSSVSGSSGGGCCSGSITEEEEE--DGCLD 153 (349)
Q Consensus 79 ~rg~~~~~g~~---~~~sd~eSp~nSP~~~~~~~~~~~~~~~~f~g~s~~sss~SssSs~~~cSgsitEee~d--DgclD 153 (349)
+|-.+...|.. +++++++++.+... .|...+..+|.+.+ ++++++++||+.||++++| |+|||
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgq------ygki~ki~~~~~~S------~~s~~~~~~s~yITy~~~eda~rci~ 143 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQ------YGKINKIVKNKDPS------SSSSSGGTCSVYITYEEEEDADRCID 143 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccc------cccceEEeecCCcc------cccCCCCCCcccccccchHhhhhHHH
Confidence 22221223333 78888999888773 13344445554221 5688889999999999865 99999
Q ss_pred cHHHHHHHhhccCcCCCCCCc------cCCCCCCCCCcccccccccchhhhcccCCCCccCCCCCCCCCCCccCCCCCcc
Q 018850 154 DWEAVADALAADDDNNKQEPE------HDRSCSQSPSESQLSVKSDSLHELANGLSLDSVKSMPDGARMVPSVSENNRRA 227 (349)
Q Consensus 154 DWEAvADAL~add~~~~q~~~------~~~~~~es~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ra 227 (349)
+|++|+|||++..... -... ...+|.. ..+.|.++.......-.-.++....-++-.+......+
T Consensus 144 ~v~g~~~dg~~lka~~-gttkycs~~l~~~~c~~--------~~cmylhe~~~~~Ds~~k~e~~~~~~~~~~~~~~~n~~ 214 (327)
T KOG2068|consen 144 DVDGFVDDGRALKASL-GTTKYCSFYLRNDICQN--------PDCMYLHEIGDQEDSFTKDEMKSAKHRESSRKQTSNIA 214 (327)
T ss_pred HhhhHHhhhhhhHHhh-CCCcchhHHhhhhcccC--------ccccccccccccccccchHHHHHHhhhhhcccccccce
Confidence 9999999999822211 1000 0001111 11222222211111100000001111111113334689
Q ss_pred cCCCCCCCCCCCCcccccCCCCCCcCCCCCCCCccccccCCCCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhh
Q 018850 228 WRPDDAFRPQSLPNLAKQRSFPAADRHFGQGGVPWACNNVLAAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILE 307 (349)
Q Consensus 228 wrpdd~~RP~slpnlsKQ~sfp~~~~~~g~~g~~w~~~~~~~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e 307 (349)
|+.++..||+-|||+.||.+||....+++ ++.+++..||||.+++|.+|..|.||+||+++|+||+..|..
T Consensus 215 ~~~~~~~~p~~l~~~~~~~s~p~~~~~~~---------~~~~v~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~ 285 (327)
T KOG2068|consen 215 RRSDDKLRPQPLPNLEKQRSAPDAQLDFS---------SVTSVPPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISD 285 (327)
T ss_pred eccCcccCCCcccccccccCCcccccCCc---------cccccCCCCCCCCCcccccccccccccccccchhhhhhcccc
Confidence 99999999999999999999999876652 233679999999999999999999999999999999999999
Q ss_pred hcCCCCCCccccccCccceeeeeecccceeeccccccccccC
Q 018850 308 EDGRCPGCRKPYEHDQVESEAIVQGGSMTFRLARSCSMIARS 349 (349)
Q Consensus 308 ~dgrCPaCRr~Yde~~~~~~~~~~~~~~~~rlsRScSM~~rs 349 (349)
-+++||+||++|...+..+...+.++..+++|++|.+|..|+
T Consensus 286 ~~~~~~~~rk~~~~~t~~s~~~~~~~~~~~~~~~s~~~~~~~ 327 (327)
T KOG2068|consen 286 GDGRCPGCRKPYERNTKKSETSVQGGGLTIRLARSSSMLCRA 327 (327)
T ss_pred cCCCCCccCCccccCccccccccccCcccccccCChhhcccC
Confidence 999999999999999999999999999999999999998764
No 2
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=99.86 E-value=6.8e-23 Score=200.44 Aligned_cols=60 Identities=40% Similarity=1.105 Sum_probs=56.8
Q ss_pred CCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhh-hcCCCCCCccccccCccceeee
Q 018850 270 APSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILE-EDGRCPGCRKPYEHDQVESEAI 329 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e-~dgrCPaCRr~Yde~~~~~~~~ 329 (349)
.+..||||+|+||++|++|+||+||||||+||||+|++ .+||||+|||.|+++.|.|..+
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv~~~~~ 73 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENVRYVTL 73 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccceeEEec
Confidence 46679999999999999999999999999999999997 8999999999999999999875
No 3
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=99.84 E-value=5.6e-22 Score=146.02 Aligned_cols=47 Identities=64% Similarity=1.526 Sum_probs=30.3
Q ss_pred CCCcccCCCCCCCccccccCCceehHHHHhhhhh-hcCCCCCCccccc
Q 018850 274 CPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILE-EDGRCPGCRKPYE 320 (349)
Q Consensus 274 CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e-~dgrCPaCRr~Yd 320 (349)
||||+|+||++|+.|+||+||||||+|||++|++ ++|+||+||++|+
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 8999999999999999999999999999999997 7999999999995
No 4
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.26 E-value=2.7e-07 Score=64.37 Aligned_cols=44 Identities=32% Similarity=0.791 Sum_probs=36.1
Q ss_pred CCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCc
Q 018850 272 SSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCR 316 (349)
Q Consensus 272 ~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCR 316 (349)
.+||||+++|+..+.. ..++|||.+|.-|+...+.....||.||
T Consensus 1 d~C~IC~~~~~~~~~~-~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKV-VKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCE-EEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeE-EEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 3799999999874444 5667999999999999988788999998
No 5
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.10 E-value=2.2e-06 Score=61.41 Aligned_cols=47 Identities=40% Similarity=1.002 Sum_probs=37.1
Q ss_pred CCCCCCcccCCCCCCCccccccCCce-ehHHHHhhhhhhcCCCCCCcccccc
Q 018850 271 PSSCPICYEDLDYTDSSFLPCLCGFR-LCLFCHKRILEEDGRCPGCRKPYEH 321 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~CGyq-iC~fC~~rI~e~dgrCPaCRr~Yde 321 (349)
+..|+||++.. .+..|. +|||. +|..|+.++.....+||.||+++..
T Consensus 2 ~~~C~iC~~~~--~~~~~~--pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENP--RDVVLL--PCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSB--SSEEEE--TTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred cCCCccCCccC--CceEEe--CCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 46899999974 344444 58999 9999999998888999999998853
No 6
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.07 E-value=3.2e-06 Score=55.71 Aligned_cols=44 Identities=34% Similarity=0.896 Sum_probs=34.8
Q ss_pred CCCCcccCCCCCCCccccccCCceehHHHHhhhhhh-cCCCCCCcccc
Q 018850 273 SCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEE-DGRCPGCRKPY 319 (349)
Q Consensus 273 ~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~-dgrCPaCRr~Y 319 (349)
+|+||++.+ ...+..-+|||.+|..|+..+... ..+||.||+.+
T Consensus 1 ~C~iC~~~~---~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF---REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh---hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 599999998 223333459999999999988775 67899999753
No 7
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.05 E-value=3.3e-06 Score=59.54 Aligned_cols=44 Identities=32% Similarity=0.742 Sum_probs=38.2
Q ss_pred CCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCcc
Q 018850 273 SCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRK 317 (349)
Q Consensus 273 ~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr 317 (349)
.|++|.+.+ ..+..|+...|||.||.-|+.++......||.||+
T Consensus 1 ~C~~C~~~~-~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKY-SEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccc-cCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 499999999 34556899999999999999999866779999986
No 8
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.74 E-value=1.6e-05 Score=54.50 Aligned_cols=39 Identities=36% Similarity=0.989 Sum_probs=32.0
Q ss_pred CCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCC
Q 018850 274 CPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGC 315 (349)
Q Consensus 274 CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaC 315 (349)
||||++.+.. .+.-.+|||.+|.-|+.++++.+.+||.|
T Consensus 1 C~iC~~~~~~---~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD---PVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS---EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC---cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 8999988765 44568999999999999998878899988
No 9
>PHA02929 N1R/p28-like protein; Provisional
Probab=97.73 E-value=2.8e-05 Score=73.43 Aligned_cols=51 Identities=25% Similarity=0.592 Sum_probs=41.0
Q ss_pred CCCCCCCcccCCCCCCC----ccccccCCceehHHHHhhhhhhcCCCCCCccccc
Q 018850 270 APSSCPICYEDLDYTDS----SFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYE 320 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD~----~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yd 320 (349)
...+||||+|.+..... .-.+.+|||.+|.-|...-+.....||-||+++.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 47899999999764332 1245789999999999888777889999999875
No 10
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=4.9e-05 Score=64.16 Aligned_cols=45 Identities=33% Similarity=0.718 Sum_probs=38.8
Q ss_pred CCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCcc
Q 018850 269 AAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRK 317 (349)
Q Consensus 269 ~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr 317 (349)
....+||||++.|... .-.+|||.+|..|...+.....+||.||.
T Consensus 11 ~~~~~C~iC~~~~~~p----~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP----VLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcC----ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 3578999999999987 56889999999999999764468999994
No 11
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.42 E-value=8e-05 Score=50.71 Aligned_cols=39 Identities=36% Similarity=0.888 Sum_probs=33.1
Q ss_pred CCCcccCCCCCCCccccccCCceehHHHHhhhhh--hcCCCCCC
Q 018850 274 CPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILE--EDGRCPGC 315 (349)
Q Consensus 274 CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e--~dgrCPaC 315 (349)
||||.+.+.... ..-+|||.+|..|+.++.+ ....||.|
T Consensus 1 C~iC~~~~~~~~---~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV---ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE---EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC---EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999987654 4689999999999999987 45689987
No 12
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=8.9e-05 Score=68.32 Aligned_cols=52 Identities=33% Similarity=0.777 Sum_probs=42.6
Q ss_pred CCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCccccccCcc
Q 018850 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHDQV 324 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde~~~ 324 (349)
...|||||+.+.. +.-.--.|||-+|.-|....+..-..||.||+.+++..+
T Consensus 131 ~~~CPiCl~~~se--k~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~ 182 (187)
T KOG0320|consen 131 TYKCPICLDSVSE--KVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQF 182 (187)
T ss_pred ccCCCceecchhh--ccccccccchhHHHHHHHHHHHhCCCCCCcccccchhhh
Confidence 4679999988753 333568899999999999998878899999998877654
No 13
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=97.35 E-value=0.00029 Score=51.23 Aligned_cols=48 Identities=21% Similarity=0.263 Sum_probs=39.2
Q ss_pred CCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCccccccCc
Q 018850 272 SSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHDQ 323 (349)
Q Consensus 272 ~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde~~ 323 (349)
..||||.+.|.. - .-.+|||.+|+-|+.+....++.||-|++++..+.
T Consensus 2 ~~Cpi~~~~~~~--P--v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~ 49 (63)
T smart00504 2 FLCPISLEVMKD--P--VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHED 49 (63)
T ss_pred cCCcCCCCcCCC--C--EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhh
Confidence 579999999874 2 23478999999999988777889999999986543
No 14
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.34 E-value=0.00019 Score=45.60 Aligned_cols=38 Identities=37% Similarity=0.964 Sum_probs=30.2
Q ss_pred CCCcccCCCCCCCccccccCCceehHHHHhhhhh-hcCCCCCC
Q 018850 274 CPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILE-EDGRCPGC 315 (349)
Q Consensus 274 CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e-~dgrCPaC 315 (349)
||||.+.. ......+|||.+|..|+..+.. ....||.|
T Consensus 1 C~iC~~~~----~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL----KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC----CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 89999882 3444567999999999998876 56789987
No 15
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.33 E-value=0.0002 Score=66.28 Aligned_cols=51 Identities=25% Similarity=0.670 Sum_probs=39.1
Q ss_pred CCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhh----------------hcCCCCCCccccccCcc
Q 018850 270 APSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILE----------------EDGRCPGCRKPYEHDQV 324 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e----------------~dgrCPaCRr~Yde~~~ 324 (349)
...+||||++.+. |-.. .+|||.+|.-|+.+.+. ...+||-||.++....+
T Consensus 17 ~~~~CpICld~~~--dPVv--T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~L 83 (193)
T PLN03208 17 GDFDCNICLDQVR--DPVV--TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATL 83 (193)
T ss_pred CccCCccCCCcCC--CcEE--cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcE
Confidence 4789999999874 4333 57999999999887642 12589999999987555
No 16
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.31 E-value=0.00016 Score=52.18 Aligned_cols=39 Identities=28% Similarity=0.770 Sum_probs=23.1
Q ss_pred CCCcccCCCCCCCccccccCCceehHHHHhhhhhh----cCCCC
Q 018850 274 CPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEE----DGRCP 313 (349)
Q Consensus 274 CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~----dgrCP 313 (349)
||||.| |+.++..-+-.+|||.||.-|+.+|... ..+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 8776666666889999999999999762 23677
No 17
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.23 E-value=0.00031 Score=68.91 Aligned_cols=54 Identities=24% Similarity=0.675 Sum_probs=40.8
Q ss_pred CCCCCCcccCC-CCCCCccccccCCceehHHHHhhhhh-hcCCCCCCccccccCcc
Q 018850 271 PSSCPICYEDL-DYTDSSFLPCLCGFRLCLFCHKRILE-EDGRCPGCRKPYEHDQV 324 (349)
Q Consensus 271 ~~~CPIC~E~L-DlTD~~F~PC~CGyqiC~fC~~rI~e-~dgrCPaCRr~Yde~~~ 324 (349)
...||+|...- .-.++.|+-=+|||.+|..|..+|.. ..+.||.|++++....+
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~f 58 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNF 58 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhc
Confidence 45799999863 33454444339999999999999965 45689999998877654
No 18
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.22 E-value=0.00013 Score=73.43 Aligned_cols=53 Identities=26% Similarity=0.678 Sum_probs=42.6
Q ss_pred CCCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCccccccCcc
Q 018850 268 LAAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHDQV 324 (349)
Q Consensus 268 ~~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde~~~ 324 (349)
+.....||||.+.|... ..-+|||.+|.-|+...+...+.||.||.++....+
T Consensus 23 Le~~l~C~IC~d~~~~P----vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~L 75 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVP----VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKL 75 (397)
T ss_pred cccccCCCcCchhhhCc----cCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccC
Confidence 34578999999988531 236899999999999988767799999999876544
No 19
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=96.94 E-value=0.00054 Score=48.62 Aligned_cols=38 Identities=32% Similarity=0.851 Sum_probs=26.3
Q ss_pred CCCcccCCCCCCCccccccCCceehHHHHhhhhh-hc---CCCCCC
Q 018850 274 CPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILE-ED---GRCPGC 315 (349)
Q Consensus 274 CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e-~d---grCPaC 315 (349)
||||.+-|.. -.-.+|||.+|+.|+.++.. .. ..||.|
T Consensus 1 CpiC~~~~~~----Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD----PVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS----EEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC----ccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999988762 24478999999999999975 22 479987
No 20
>PHA02926 zinc finger-like protein; Provisional
Probab=96.91 E-value=0.00061 Score=64.91 Aligned_cols=54 Identities=26% Similarity=0.573 Sum_probs=40.6
Q ss_pred CCCCCCCCCCcccCCC----CCCCccc-cccCCceehHHHHhhhhhh------cCCCCCCccccc
Q 018850 267 VLAAPSSCPICYEDLD----YTDSSFL-PCLCGFRLCLFCHKRILEE------DGRCPGCRKPYE 320 (349)
Q Consensus 267 ~~~~~~~CPIC~E~LD----lTD~~F~-PC~CGyqiC~fC~~rI~e~------dgrCPaCRr~Yd 320 (349)
..+.+.+|+||+|..- ..|+.|- +-+|+|-+|+.|..+-... ...||-||..+.
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 3456899999999863 4577774 4589999999997776541 235999999875
No 21
>PLN02189 cellulose synthase
Probab=96.83 E-value=0.00058 Score=75.59 Aligned_cols=50 Identities=30% Similarity=0.811 Sum_probs=43.4
Q ss_pred CCCCCCcccCCCCC--CCcccccc-CCceehHHHHhhhhh-hcCCCCCCccccc
Q 018850 271 PSSCPICYEDLDYT--DSSFLPCL-CGFRLCLFCHKRILE-EDGRCPGCRKPYE 320 (349)
Q Consensus 271 ~~~CPIC~E~LDlT--D~~F~PC~-CGyqiC~fC~~rI~e-~dgrCPaCRr~Yd 320 (349)
...|.||-++++++ .-.|..|. |+|.+|+.||...++ .+..||.|++.|.
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 34799999998754 56899999 999999999988865 5779999999998
No 22
>PLN02436 cellulose synthase A
Probab=96.55 E-value=0.0017 Score=72.22 Aligned_cols=50 Identities=28% Similarity=0.830 Sum_probs=43.0
Q ss_pred CCCCCCcccCCCCC--CCcccccc-CCceehHHHHhhhhh-hcCCCCCCccccc
Q 018850 271 PSSCPICYEDLDYT--DSSFLPCL-CGFRLCLFCHKRILE-EDGRCPGCRKPYE 320 (349)
Q Consensus 271 ~~~CPIC~E~LDlT--D~~F~PC~-CGyqiC~fC~~rI~e-~dgrCPaCRr~Yd 320 (349)
...|.||-+++.+| --.|..|. |||.+|+.||...++ .+..||.|++.|.
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 34799999998554 46899999 999999999988865 5779999999998
No 23
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=96.39 E-value=0.0023 Score=62.32 Aligned_cols=45 Identities=29% Similarity=0.778 Sum_probs=39.6
Q ss_pred CCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCccccc
Q 018850 270 APSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYE 320 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yd 320 (349)
...+||+|++.|-+-+.+ |.=||-+|-.|-.++ ..+||.||.+|.
T Consensus 47 ~lleCPvC~~~l~~Pi~Q---C~nGHlaCssC~~~~---~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPPIFQ---CDNGHLACSSCRTKV---SNKCPTCRLPIG 91 (299)
T ss_pred hhccCchhhccCccccee---cCCCcEehhhhhhhh---cccCCccccccc
Confidence 468999999999986555 999999999998766 479999999997
No 24
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=96.38 E-value=0.0029 Score=49.31 Aligned_cols=46 Identities=28% Similarity=0.705 Sum_probs=34.8
Q ss_pred CCCCCCcccCCCCC---------CCccccccCCceehHHHHhhhhhhcCCCCCCc
Q 018850 271 PSSCPICYEDLDYT---------DSSFLPCLCGFRLCLFCHKRILEEDGRCPGCR 316 (349)
Q Consensus 271 ~~~CPIC~E~LDlT---------D~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCR 316 (349)
+..|+||.++|... +..+.--+|||.+-.-|+.+-++....||.||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 56799999999432 23333346999999999999888777999998
No 25
>PLN02248 cellulose synthase-like protein
Probab=95.32 E-value=0.012 Score=65.88 Aligned_cols=40 Identities=38% Similarity=1.108 Sum_probs=33.1
Q ss_pred CccccccCCceehHHHHhhhhhhcCCCCCCccccccCccc
Q 018850 286 SSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHDQVE 325 (349)
Q Consensus 286 ~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde~~~~ 325 (349)
....||.|+|.||+-||---+...|.||+|..+|......
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (1135)
T PLN02248 143 EDLLPCECGFKICRDCYIDAVKSGGICPGCKEPYKVTDLD 182 (1135)
T ss_pred ccCCcccccchhHHhHhhhhhhcCCCCCCCcccccccccc
Confidence 4568999999999999877766689999999999654443
No 26
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.014 Score=59.70 Aligned_cols=52 Identities=33% Similarity=0.667 Sum_probs=42.7
Q ss_pred CCCCCCCCCcccCCCCCC---------CccccccCCceehHHHHhhhhhhcCCCCCCcccc
Q 018850 268 LAAPSSCPICYEDLDYTD---------SSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPY 319 (349)
Q Consensus 268 ~~~~~~CPIC~E~LDlTD---------~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Y 319 (349)
.+.+-.|-|||++|=-+| +.-+-.||||-+=+-|+++-+|...-||-||+|.
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 456889999999974444 2234489999999999999999899999999993
No 27
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=95.23 E-value=0.017 Score=47.69 Aligned_cols=57 Identities=28% Similarity=0.722 Sum_probs=40.0
Q ss_pred cccccCCCCCCCCCCcccCCCCC---------CCccccccCCceehHHHHhhhhh---hcCCCCCCccccc
Q 018850 262 WACNNVLAAPSSCPICYEDLDYT---------DSSFLPCLCGFRLCLFCHKRILE---EDGRCPGCRKPYE 320 (349)
Q Consensus 262 w~~~~~~~~~~~CPIC~E~LDlT---------D~~F~PC~CGyqiC~fC~~rI~e---~dgrCPaCRr~Yd 320 (349)
|.+. ++.++.|+||...||.+ |-.+.-+.|+|.+=+-|+.+=++ ..++||-||+++.
T Consensus 14 W~Wd--~~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 14 WKWD--VANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred EEEe--cCCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 5553 23478888888888743 22333457999988888777765 3689999999874
No 28
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.0093 Score=61.32 Aligned_cols=58 Identities=22% Similarity=0.434 Sum_probs=44.7
Q ss_pred CCCCCCCCCCcccCCCCCCC-ccccccCCceehHHHHhhhhhhcCCCCCCccccccCcc
Q 018850 267 VLAAPSSCPICYEDLDYTDS-SFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHDQV 324 (349)
Q Consensus 267 ~~~~~~~CPIC~E~LDlTD~-~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde~~~ 324 (349)
..+....|+||.|+|-..+. .-+-.+|||.+|..|+..-.+...-||.||..+.....
T Consensus 287 ~~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~~~~ 345 (543)
T KOG0802|consen 287 LALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYDYVL 345 (543)
T ss_pred hhhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhcccc
Confidence 33458899999999976422 12337899999999999998888899999995544443
No 29
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=95.16 E-value=0.019 Score=47.22 Aligned_cols=51 Identities=29% Similarity=0.796 Sum_probs=22.9
Q ss_pred CCCCCCcccCCCCCC--Ccccccc-CCceehHHHHhhhhh-hcCCCCCCcccccc
Q 018850 271 PSSCPICYEDLDYTD--SSFLPCL-CGFRLCLFCHKRILE-EDGRCPGCRKPYEH 321 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD--~~F~PC~-CGyqiC~fC~~rI~e-~dgrCPaCRr~Yde 321 (349)
...|-||-++.-++. -.|..|. |+|-+|.-||..=+. -+.-||-|+.+|..
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 457999999986653 6789997 999999999876654 56789999999974
No 30
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.08 E-value=0.016 Score=54.14 Aligned_cols=49 Identities=31% Similarity=0.610 Sum_probs=40.8
Q ss_pred CCCCCCcccCCCCCC--CccccccCCceehHHHHhhhhh-hcCCCCCCcccc
Q 018850 271 PSSCPICYEDLDYTD--SSFLPCLCGFRLCLFCHKRILE-EDGRCPGCRKPY 319 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD--~~F~PC~CGyqiC~fC~~rI~e-~dgrCPaCRr~Y 319 (349)
...|=||-++|...| ..-+-..|||.||+.|..+|.. ....||+||.+.
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 468999999998774 4445578999999999999986 567899999995
No 31
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=94.77 E-value=0.0073 Score=60.99 Aligned_cols=56 Identities=21% Similarity=0.594 Sum_probs=45.1
Q ss_pred CCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCccccccCccceeee
Q 018850 270 APSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHDQVESEAI 329 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde~~~~~~~~ 329 (349)
...-|-||.|-|-+ -..-||+|.+|-||....+.....||+|+-++.+.-.....|
T Consensus 22 ~lLRC~IC~eyf~i----p~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~i 77 (442)
T KOG0287|consen 22 DLLRCGICFEYFNI----PMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRI 77 (442)
T ss_pred HHHHHhHHHHHhcC----ceeccccchHHHHHHHHHhccCCCCCceecccchhhhhhhhH
Confidence 35689999998875 234569999999999999888899999999998766554443
No 32
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.67 E-value=0.024 Score=56.22 Aligned_cols=53 Identities=23% Similarity=0.545 Sum_probs=39.9
Q ss_pred CCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhh-cCCCCCCccccccCccc
Q 018850 269 AAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEE-DGRCPGCRKPYEHDQVE 325 (349)
Q Consensus 269 ~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~-dgrCPaCRr~Yde~~~~ 325 (349)
....+|+||+..+--- .-.+|+|.+|+.|.+..--. .+-|+-||++++++.+-
T Consensus 5 ~~~~eC~IC~nt~n~P----v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~ 58 (324)
T KOG0824|consen 5 TKKKECLICYNTGNCP----VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDF 58 (324)
T ss_pred ccCCcceeeeccCCcC----ccccccchhhhhhhcchhhcCCCCCceecCCCCcchhc
Confidence 3478999999877532 34779999999997766433 34599999999986553
No 33
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.61 E-value=0.02 Score=55.64 Aligned_cols=51 Identities=27% Similarity=0.490 Sum_probs=38.8
Q ss_pred CCCCCCCcccCCCCCCCccccccCCceehHHHHhhhh--hhcCCCCCCccccccCcc
Q 018850 270 APSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRIL--EEDGRCPGCRKPYEHDQV 324 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~--e~dgrCPaCRr~Yde~~~ 324 (349)
.+..|+||+|.+- .+.=-+|||-+|.+|+--.. ..-..||-||.....+.|
T Consensus 214 ~d~kC~lC~e~~~----~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 214 ADYKCFLCLEEPE----VPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred cccceeeeecccC----CcccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 3778999999876 34446799999999977632 245679999998766555
No 34
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=0.0044 Score=62.36 Aligned_cols=49 Identities=33% Similarity=0.680 Sum_probs=37.9
Q ss_pred CCCCCCCCcccCCCCCCCccccccCCceehHHH-HhhhhhhcCCCCCCccccc
Q 018850 269 AAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFC-HKRILEEDGRCPGCRKPYE 320 (349)
Q Consensus 269 ~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC-~~rI~e~dgrCPaCRr~Yd 320 (349)
-....||||.+-|-.|=.. =.|+|+||.-| |..++.-+.-||+||+...
T Consensus 41 ~~~v~c~icl~llk~tmtt---keClhrfc~~ci~~a~r~gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKTMTT---KECLHRFCFDCIWKALRSGNNECPTCRKKLV 90 (381)
T ss_pred hhhhccHHHHHHHHhhccc---HHHHHHHHHHHHHHHHHhcCCCCchHHhhcc
Confidence 3577899999887654333 35999999999 6666667889999999764
No 35
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.43 E-value=0.036 Score=57.87 Aligned_cols=56 Identities=25% Similarity=0.479 Sum_probs=39.7
Q ss_pred CCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhh-----hcCCCCCCccccccCccceeee
Q 018850 270 APSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILE-----EDGRCPGCRKPYEHDQVESEAI 329 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e-----~dgrCPaCRr~Yde~~~~~~~~ 329 (349)
.+..||||.|+--..- --.|||-+|.-|+=+..+ .-..||-||..+....+.-..+
T Consensus 185 t~~~CPICL~~~~~p~----~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~ 245 (513)
T KOG2164|consen 185 TDMQCPICLEPPSVPV----RTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFI 245 (513)
T ss_pred cCCcCCcccCCCCccc----ccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeee
Confidence 3889999999865321 134999999999666654 2368999999887654444333
No 36
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=94.10 E-value=0.024 Score=56.44 Aligned_cols=49 Identities=27% Similarity=0.569 Sum_probs=38.3
Q ss_pred CCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCccccccC
Q 018850 270 APSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHD 322 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde~ 322 (349)
.-.-|-||-+-|-+ -..-+|||.+|.||..+-+....-||.||-+.-+.
T Consensus 24 s~lrC~IC~~~i~i----p~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~es 72 (391)
T COG5432 24 SMLRCRICDCRISI----PCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCES 72 (391)
T ss_pred hHHHhhhhhheeec----ceecccccchhHHHHHHHhcCCCCCccccccHHhh
Confidence 35689999876653 12346999999999998888778899999887554
No 37
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.83 E-value=0.054 Score=53.29 Aligned_cols=50 Identities=28% Similarity=0.696 Sum_probs=36.5
Q ss_pred CCCCCCCcccCC-CCCCCccccccCCceehHHHHhhhhhhcCCCCCCccccccCcc
Q 018850 270 APSSCPICYEDL-DYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHDQV 324 (349)
Q Consensus 270 ~~~~CPIC~E~L-DlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde~~~ 324 (349)
....|-||+|.. ++ ---||||-+|-+|..-=..+..-||-||.+.....+
T Consensus 238 a~~kC~LCLe~~~~p-----SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNP-----SATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKV 288 (293)
T ss_pred CCCceEEEecCCCCC-----CcCcCcchHHHHHHHHHHccccCCCcccccCCCcce
Confidence 467899999988 44 336799986666654444444569999999987665
No 38
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=93.75 E-value=0.033 Score=43.39 Aligned_cols=50 Identities=34% Similarity=0.578 Sum_probs=20.9
Q ss_pred CCCCCCcccCCC-CCCCccccc---cCC---ceehHHHHhhhhh--------hcCCCCCCccccc
Q 018850 271 PSSCPICYEDLD-YTDSSFLPC---LCG---FRLCLFCHKRILE--------EDGRCPGCRKPYE 320 (349)
Q Consensus 271 ~~~CPIC~E~LD-lTD~~F~PC---~CG---yqiC~fC~~rI~e--------~dgrCPaCRr~Yd 320 (349)
+.+|+||++.+. ...+.-.-| .|+ |..|++=|=+=.+ ..|.||.|++++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 578999999865 322322334 574 6677776633221 3478999998874
No 39
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.41 E-value=0.067 Score=50.35 Aligned_cols=54 Identities=19% Similarity=0.461 Sum_probs=43.3
Q ss_pred CCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCccccccCcc
Q 018850 270 APSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHDQV 324 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde~~~ 324 (349)
....|||...+|.-.-.-.+.=+||+.++.-++..|. .+..||.|-++|.+..|
T Consensus 112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~Di 165 (260)
T PF04641_consen 112 GRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEEDI 165 (260)
T ss_pred ceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCCE
Confidence 4778999999996555555677999888888888775 46789999999997665
No 40
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=93.35 E-value=0.065 Score=41.47 Aligned_cols=50 Identities=24% Similarity=0.248 Sum_probs=35.9
Q ss_pred CCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhh-cCCCCCCccccccCcc
Q 018850 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEE-DGRCPGCRKPYEHDQV 324 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~-dgrCPaCRr~Yde~~~ 324 (349)
.+.|||+.+-|.. -.-.++||.+++.|+.+-+.. ...||.|+++.....+
T Consensus 4 ~f~CpIt~~lM~d----PVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l 54 (73)
T PF04564_consen 4 EFLCPITGELMRD----PVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDL 54 (73)
T ss_dssp GGB-TTTSSB-SS----EEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGS
T ss_pred ccCCcCcCcHhhC----ceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccc
Confidence 5789999999963 233579999999998888776 7899999999887544
No 41
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.33 E-value=0.042 Score=54.97 Aligned_cols=51 Identities=24% Similarity=0.520 Sum_probs=42.9
Q ss_pred CCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhh-hcCCCCCCccccc
Q 018850 269 AAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILE-EDGRCPGCRKPYE 320 (349)
Q Consensus 269 ~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e-~dgrCPaCRr~Yd 320 (349)
...-+|.|||+.+--.|+ +.-.||.|.+=.-|..+-+. ...+||-||.+.-
T Consensus 321 ~~GveCaICms~fiK~d~-~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 321 DKGVECAICMSNFIKNDR-LRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCCceEEEEhhhhcccce-EEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 345789999999988887 78899999999999887765 6678999998763
No 42
>PLN02400 cellulose synthase
Probab=92.80 E-value=0.071 Score=59.91 Aligned_cols=49 Identities=31% Similarity=0.801 Sum_probs=40.9
Q ss_pred CCCCCcccCCCCCC--Ccccccc-CCceehHHHHhhhhh-hcCCCCCCccccc
Q 018850 272 SSCPICYEDLDYTD--SSFLPCL-CGFRLCLFCHKRILE-EDGRCPGCRKPYE 320 (349)
Q Consensus 272 ~~CPIC~E~LDlTD--~~F~PC~-CGyqiC~fC~~rI~e-~dgrCPaCRr~Yd 320 (349)
..|-||-++..+|. -.|.-|. |+|-+|+-||..=+. -+.-||-|+..|.
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 36999999987764 4788897 999999999966543 5678999999998
No 43
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=92.00 E-value=0.12 Score=58.08 Aligned_cols=49 Identities=29% Similarity=0.781 Sum_probs=41.4
Q ss_pred CCCCCcccCCCCCC--Ccccccc-CCceehHHHHhhhhh-hcCCCCCCccccc
Q 018850 272 SSCPICYEDLDYTD--SSFLPCL-CGFRLCLFCHKRILE-EDGRCPGCRKPYE 320 (349)
Q Consensus 272 ~~CPIC~E~LDlTD--~~F~PC~-CGyqiC~fC~~rI~e-~dgrCPaCRr~Yd 320 (349)
..|-||-++..+|. -.|.-|. |||-+|+-||.-=+. .+.-||-|...|.
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 47999999987774 4788897 999999999976553 5678999999997
No 44
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=91.87 E-value=0.11 Score=51.90 Aligned_cols=53 Identities=30% Similarity=0.673 Sum_probs=41.6
Q ss_pred CCCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCccccccCc
Q 018850 268 LAAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHDQ 323 (349)
Q Consensus 268 ~~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde~~ 323 (349)
+.....||||+-.+-. .+..-.|||.+|.+|..........||.||+....+.
T Consensus 18 ~~~~l~C~~C~~vl~~---p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRD---PVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAE 70 (391)
T ss_pred CcccccCccccccccC---CCCCCCCCCcccccccchhhccCcCCcccccccchhh
Confidence 3457899999998854 2333689999999999888766889999988775433
No 45
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=91.85 E-value=0.098 Score=51.65 Aligned_cols=55 Identities=29% Similarity=0.654 Sum_probs=40.4
Q ss_pred CCCCcccCC-CCCCCccccccCCceehHHHHhhhhh-hcCCCCCCccccccCcccee
Q 018850 273 SCPICYEDL-DYTDSSFLPCLCGFRLCLFCHKRILE-EDGRCPGCRKPYEHDQVESE 327 (349)
Q Consensus 273 ~CPIC~E~L-DlTD~~F~PC~CGyqiC~fC~~rI~e-~dgrCPaCRr~Yde~~~~~~ 327 (349)
-||+|--.- -.-|+.++-=+|||.+|--|..+|.. -.+.||.|-++.-.+.+-..
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nfr~q 58 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNFRVQ 58 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcccchh
Confidence 599997432 22344454458999999999999987 56899999887766555443
No 46
>PLN02195 cellulose synthase A
Probab=91.10 E-value=0.17 Score=56.57 Aligned_cols=50 Identities=26% Similarity=0.761 Sum_probs=42.0
Q ss_pred CCCCCCcccCCCCCC--Ccccccc-CCceehHHHHhhhhh-hcCCCCCCccccc
Q 018850 271 PSSCPICYEDLDYTD--SSFLPCL-CGFRLCLFCHKRILE-EDGRCPGCRKPYE 320 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD--~~F~PC~-CGyqiC~fC~~rI~e-~dgrCPaCRr~Yd 320 (349)
...|-||-++++++. -.|.-|. |+|.+|+-||.-=+. .+.-||-|...|.
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 458999999887764 5688897 999999999976654 5678999999998
No 47
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.05 E-value=0.067 Score=41.97 Aligned_cols=47 Identities=38% Similarity=0.908 Sum_probs=34.9
Q ss_pred CCCCCCcccCCCCCCCccccccCCce-ehHHHHhhhhh-hcCCCCCCcccccc
Q 018850 271 PSSCPICYEDLDYTDSSFLPCLCGFR-LCLFCHKRILE-EDGRCPGCRKPYEH 321 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~CGyq-iC~fC~~rI~e-~dgrCPaCRr~Yde 321 (349)
..+|-||||.- .|..++ .|||- +|.-|--+++. ..|.||-||.|...
T Consensus 7 ~dECTICye~p--vdsVlY--tCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 7 SDECTICYEHP--VDSVLY--TCGHMCMCYACGLRLKKALHGCCPICRAPIKD 55 (62)
T ss_pred ccceeeeccCc--chHHHH--HcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence 47999999853 344444 57764 68888778765 78999999998754
No 48
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=90.08 E-value=0.15 Score=55.13 Aligned_cols=52 Identities=21% Similarity=0.588 Sum_probs=40.4
Q ss_pred CCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhh-hcCCCCCCccccccCcc
Q 018850 269 AAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILE-EDGRCPGCRKPYEHDQV 324 (349)
Q Consensus 269 ~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e-~dgrCPaCRr~Yde~~~ 324 (349)
....+||.|-..+ +.-..-.|||-||.-|.....+ ...+||.|-.+|....|
T Consensus 641 K~~LkCs~Cn~R~----Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv 693 (698)
T KOG0978|consen 641 KELLKCSVCNTRW----KDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDV 693 (698)
T ss_pred HhceeCCCccCch----hhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Confidence 3468999998433 2334467999999999888876 67899999999987665
No 49
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=90.06 E-value=0.25 Score=44.27 Aligned_cols=52 Identities=25% Similarity=0.663 Sum_probs=39.9
Q ss_pred CCCCCCcccCCCCCCCcc-cccc-CCceehHHHHhhhhh---hcCCCCCCccccccCcc
Q 018850 271 PSSCPICYEDLDYTDSSF-LPCL-CGFRLCLFCHKRILE---EDGRCPGCRKPYEHDQV 324 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F-~PC~-CGyqiC~fC~~rI~e---~dgrCPaCRr~Yde~~~ 324 (349)
.-+|-||-|--. |..| +|=. |||.||--|+-+|-. ....||.|+.-|.....
T Consensus 80 lYeCnIC~etS~--ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~~ 136 (140)
T PF05290_consen 80 LYECNICKETSA--EERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSSS 136 (140)
T ss_pred ceeccCcccccc--hhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccccc
Confidence 568999988653 4444 7766 599999999999943 56899999998865543
No 50
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=89.80 E-value=0.23 Score=49.99 Aligned_cols=43 Identities=33% Similarity=0.800 Sum_probs=32.9
Q ss_pred CCCCCCCCcccCCCCCCCcccccc---CCceehHHHHh-hhhhhcCCCCCCcc
Q 018850 269 AAPSSCPICYEDLDYTDSSFLPCL---CGFRLCLFCHK-RILEEDGRCPGCRK 317 (349)
Q Consensus 269 ~~~~~CPIC~E~LDlTD~~F~PC~---CGyqiC~fC~~-rI~e~dgrCPaCRr 317 (349)
+....||||---|- .||. ||+.+|-.|+. .|++.+..||+|-+
T Consensus 272 ~i~LkCplc~~Llr------np~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 272 NISLKCPLCHCLLR------NPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred CccccCcchhhhhh------CcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 34588999975443 3332 89999999976 45678999999987
No 51
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=89.76 E-value=0.25 Score=55.59 Aligned_cols=50 Identities=26% Similarity=0.822 Sum_probs=41.4
Q ss_pred CCCCCCcccCCCCCC--Ccccccc-CCceehHHHHhhhhh-hcCCCCCCccccc
Q 018850 271 PSSCPICYEDLDYTD--SSFLPCL-CGFRLCLFCHKRILE-EDGRCPGCRKPYE 320 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD--~~F~PC~-CGyqiC~fC~~rI~e-~dgrCPaCRr~Yd 320 (349)
...|-||-++..++. -.|.-|. |+|.+|+-||.-=+. .+.-||-|...|.
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 467999999987764 4678897 999999999965543 5678999999998
No 52
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=89.75 E-value=0.16 Score=51.93 Aligned_cols=48 Identities=29% Similarity=0.661 Sum_probs=38.9
Q ss_pred CCCCCCcccCCCCCCCccccccCCceehHHHHhhhhh--hcCCCCCCccccccC
Q 018850 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILE--EDGRCPGCRKPYEHD 322 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e--~dgrCPaCRr~Yde~ 322 (349)
...|-||.+.+... -..||+|++|.-|--|++. +..-||.||...+.-
T Consensus 61 n~~C~ICA~~~TYs----~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V 110 (493)
T COG5236 61 NMNCQICAGSTTYS----ARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAV 110 (493)
T ss_pred cceeEEecCCceEE----EeccCCchHHHHHHHHHHHHHhccCCCccccccceE
Confidence 56799999998754 3358999999999999976 556799999987653
No 53
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.63 E-value=0.3 Score=48.28 Aligned_cols=52 Identities=25% Similarity=0.522 Sum_probs=39.8
Q ss_pred cCCCCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhc--CCCCCCccccc
Q 018850 266 NVLAAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEED--GRCPGCRKPYE 320 (349)
Q Consensus 266 ~~~~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~d--grCPaCRr~Yd 320 (349)
+......+||+|-|+=.+ .|.--+|||..|.+|...-.+.+ -.||.|-.+..
T Consensus 234 s~~t~~~~C~~Cg~~Pti---P~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 234 STGTSDTECPVCGEPPTI---PHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccccCCceeeccCCCCCC---CeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 444457899999998765 45557899999999988777644 69999966543
No 54
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.35 E-value=0.17 Score=52.62 Aligned_cols=51 Identities=27% Similarity=0.628 Sum_probs=37.6
Q ss_pred CCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCcccccc
Q 018850 269 AAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEH 321 (349)
Q Consensus 269 ~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde 321 (349)
-..++||+|.|.||..=.-..+-.|.|.+=.-|..+- .+..||-||---..
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w--~~~scpvcR~~q~p 223 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW--WDSSCPVCRYCQSP 223 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccccchHHHhhc--ccCcChhhhhhcCc
Confidence 3578999999999987777788888777544454433 36788888866553
No 55
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.28 E-value=0.27 Score=49.41 Aligned_cols=48 Identities=25% Similarity=0.614 Sum_probs=38.6
Q ss_pred CCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCC-CCCCccccc
Q 018850 272 SSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGR-CPGCRKPYE 320 (349)
Q Consensus 272 ~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgr-CPaCRr~Yd 320 (349)
.+|.||+|+|-.-|+. +-.||.|.+=.-|...=+-...+ ||-|++..-
T Consensus 230 ~~CaIClEdY~~Gdkl-RiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKL-RILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCee-eEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 6999999999999976 66899988777787666555555 999999663
No 56
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.07 E-value=0.58 Score=44.94 Aligned_cols=54 Identities=26% Similarity=0.528 Sum_probs=41.1
Q ss_pred CCCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhh---hcCCCCCCccccccCccc
Q 018850 268 LAAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILE---EDGRCPGCRKPYEHDQVE 325 (349)
Q Consensus 268 ~~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e---~dgrCPaCRr~Yde~~~~ 325 (349)
....++|-||++-- +.-.--.|||-+|--|+++-+. ...-||-|+-..+.+++.
T Consensus 44 ~~~~FdCNICLd~a----kdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vv 100 (230)
T KOG0823|consen 44 DGGFFDCNICLDLA----KDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVV 100 (230)
T ss_pred CCCceeeeeecccc----CCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEE
Confidence 34588999998543 2224467999999999999986 234689999999887764
No 57
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.85 E-value=0.32 Score=48.99 Aligned_cols=47 Identities=38% Similarity=0.912 Sum_probs=37.1
Q ss_pred CCCCCCCcccCCCCCCCcccccc--CCceehHHHHhhhhhhcCCCCCCcccccc
Q 018850 270 APSSCPICYEDLDYTDSSFLPCL--CGFRLCLFCHKRILEEDGRCPGCRKPYEH 321 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD~~F~PC~--CGyqiC~fC~~rI~e~dgrCPaCRr~Yde 321 (349)
...+|=||+.+- .|....||. | +|.-|-.-|+-...+||-||+++.+
T Consensus 289 ~gkeCVIClse~--rdt~vLPCRHLC---LCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 289 SGKECVICLSES--RDTVVLPCRHLC---LCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred CCCeeEEEecCC--cceEEecchhhe---hhHhHHHHHHHhhcCCCccccchHh
Confidence 367999999764 466777776 5 8889999887556789999999864
No 58
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.24 E-value=0.46 Score=48.46 Aligned_cols=54 Identities=26% Similarity=0.587 Sum_probs=41.1
Q ss_pred CCCCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCccccccCcc
Q 018850 267 VLAAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHDQV 324 (349)
Q Consensus 267 ~~~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde~~~ 324 (349)
.+..++.|-+|+.-|=.. .-.+|||..|++|.++.++.+.-||-||-+|-+-.+
T Consensus 80 ~~~sef~c~vc~~~l~~p----v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~~~ 133 (398)
T KOG4159|consen 80 EIRSEFECCVCSRALYPP----VVTPCGHSFCLECLDRSLDQETECPLCRDELVELPA 133 (398)
T ss_pred cccchhhhhhhHhhcCCC----ccccccccccHHHHHHHhccCCCCcccccccccchH
Confidence 335789999996443211 114899999999999988888899999999977433
No 59
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=85.13 E-value=0.32 Score=50.30 Aligned_cols=52 Identities=27% Similarity=0.599 Sum_probs=45.3
Q ss_pred CCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhc--CCCCCCccccc
Q 018850 269 AAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEED--GRCPGCRKPYE 320 (349)
Q Consensus 269 ~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~d--grCPaCRr~Yd 320 (349)
.....|-+|-|-+-+.|-++.-.||.|-+=.-|.+-|++.+ .-||+||+-..
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHh
Confidence 34789999999999999999999999999999999998754 57999995544
No 60
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=83.66 E-value=0.35 Score=54.62 Aligned_cols=51 Identities=29% Similarity=0.691 Sum_probs=32.9
Q ss_pred CCCCCCCCcccCCCCCCCcccc--cc-CCceehHHHHhhhhh--hcCCCCCCcccc
Q 018850 269 AAPSSCPICYEDLDYTDSSFLP--CL-CGFRLCLFCHKRILE--EDGRCPGCRKPY 319 (349)
Q Consensus 269 ~~~~~CPIC~E~LDlTD~~F~P--C~-CGyqiC~fC~~rI~e--~dgrCPaCRr~Y 319 (349)
..-++|+|||.-|+..|+.|-. |+ |.+.+=--|+-+-.. .+.+||-||..+
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRsei 1522 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccc
Confidence 3478999999999999988633 43 443333333222222 457899999543
No 61
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=83.65 E-value=1 Score=41.37 Aligned_cols=48 Identities=25% Similarity=0.627 Sum_probs=34.4
Q ss_pred CCCCCCCCcccCCCCCCCccccccC-C-----ceehHHHHhhhhh--hcCCCCCCccccccC
Q 018850 269 AAPSSCPICYEDLDYTDSSFLPCLC-G-----FRLCLFCHKRILE--EDGRCPGCRKPYEHD 322 (349)
Q Consensus 269 ~~~~~CPIC~E~LDlTD~~F~PC~C-G-----yqiC~fC~~rI~e--~dgrCPaCRr~Yde~ 322 (349)
..+..|-||.++.+. ...||.| | ||-|+ .+=.. ....|+-|..+|.-.
T Consensus 6 ~~~~~CRIC~~~~~~---~~~PC~CkGs~k~VH~sCL---~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 6 LMDKCCWICKDEYDV---VTNYCNCKNENKIVHKECL---EEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCCeeEecCCCCCC---ccCCcccCCCchHHHHHHH---HHHHhcCCCCcccccCCeEEEE
Confidence 457899999999652 3479999 6 77555 33322 456899999999643
No 62
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.08 E-value=1.3 Score=43.74 Aligned_cols=57 Identities=18% Similarity=0.292 Sum_probs=48.5
Q ss_pred CCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCccccccCccce
Q 018850 270 APSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHDQVES 326 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde~~~~~ 326 (349)
....||+|-..|..|-.-..+=+||+.+|.-|..+|+..+.-||-|-++..+..|-.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceEe
Confidence 467899999999876555555579999999999999999999999999998877643
No 63
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.02 E-value=0.68 Score=49.13 Aligned_cols=52 Identities=21% Similarity=0.509 Sum_probs=38.2
Q ss_pred CCCCCCCCcccCCCCCC-------------CccccccCCceehHHHHhhhhh-hcCCCCCCccccc
Q 018850 269 AAPSSCPICYEDLDYTD-------------SSFLPCLCGFRLCLFCHKRILE-EDGRCPGCRKPYE 320 (349)
Q Consensus 269 ~~~~~CPIC~E~LDlTD-------------~~F~PC~CGyqiC~fC~~rI~e-~dgrCPaCRr~Yd 320 (349)
...-+|+|||.+.|+.- +++..-||.|-+=.-|+.+-++ ....||-||++.-
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 34678999999998731 2344458888777778877776 4568999999864
No 64
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.97 E-value=0.65 Score=46.65 Aligned_cols=46 Identities=30% Similarity=0.621 Sum_probs=34.4
Q ss_pred CCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhh------hcCCCCCC
Q 018850 270 APSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILE------EDGRCPGC 315 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e------~dgrCPaC 315 (349)
...+|.||+.++-..|..|....|+|++|.-|+.+-.+ ...+||.=
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~ 196 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHD 196 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCC
Confidence 37899999955555566667999999999999986654 23477653
No 65
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=81.61 E-value=0.63 Score=48.43 Aligned_cols=46 Identities=33% Similarity=0.601 Sum_probs=36.6
Q ss_pred CCCCCCcccCCCCCCCccccccCCceehHHHHhhhhh--hcCCCCCCccccc
Q 018850 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILE--EDGRCPGCRKPYE 320 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e--~dgrCPaCRr~Yd 320 (349)
-..|-||.| .|+..+-=||||-+|--|+..--+ +..-||+||..+.
T Consensus 369 FeLCKICae----ndKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 369 FELCKICAE----NDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred HHHHHHhhc----cCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 457999987 467777788999999999888765 3347999998764
No 66
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=81.42 E-value=0.6 Score=37.19 Aligned_cols=28 Identities=32% Similarity=0.791 Sum_probs=17.4
Q ss_pred cccccCCceehHHHHhhhhh--hcCCCCCCc
Q 018850 288 FLPCLCGFRLCLFCHKRILE--EDGRCPGCR 316 (349)
Q Consensus 288 F~PC~CGyqiC~fC~~rI~e--~dgrCPaCR 316 (349)
.+|||||.++=. -+.-+.+ .-.|||.|-
T Consensus 22 tyPCPCGDRFeI-sLeDl~~GE~VArCPSCS 51 (67)
T COG5216 22 TYPCPCGDRFEI-SLEDLRNGEVVARCPSCS 51 (67)
T ss_pred EecCCCCCEeEE-EHHHhhCCceEEEcCCce
Confidence 389999876421 2333333 236999994
No 67
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=80.74 E-value=0.66 Score=31.78 Aligned_cols=27 Identities=33% Similarity=0.920 Sum_probs=15.4
Q ss_pred CCCCCCcccCCCCCCCcccccc-CCcee
Q 018850 271 PSSCPICYEDLDYTDSSFLPCL-CGFRL 297 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~-CGyqi 297 (349)
...||+|-.++.+.|-..+-|+ |+|++
T Consensus 2 ~p~Cp~C~se~~y~D~~~~vCp~C~~ew 29 (30)
T PF08274_consen 2 LPKCPLCGSEYTYEDGELLVCPECGHEW 29 (30)
T ss_dssp S---TTT-----EE-SSSEEETTTTEEE
T ss_pred CCCCCCCCCcceeccCCEEeCCcccccC
Confidence 3579999999999999999998 88874
No 68
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=79.89 E-value=0.56 Score=50.53 Aligned_cols=48 Identities=35% Similarity=0.883 Sum_probs=39.3
Q ss_pred CCCCCcccCCCCCCCccccccCCceehHHHHhhhhh--hcCCCCCCccccccCcc
Q 018850 272 SSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILE--EDGRCPGCRKPYEHDQV 324 (349)
Q Consensus 272 ~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e--~dgrCPaCRr~Yde~~~ 324 (349)
..|+||++ +| .+.+-.|||-+|.-|+....+ .+..||-||....+...
T Consensus 455 ~~c~ic~~-~~----~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l 504 (674)
T KOG1001|consen 455 HWCHICCD-LD----SFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKL 504 (674)
T ss_pred cccccccc-cc----cceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHH
Confidence 89999999 44 567789999999999887765 56789999988766544
No 69
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.82 E-value=1.4 Score=44.35 Aligned_cols=52 Identities=27% Similarity=0.664 Sum_probs=39.0
Q ss_pred CCCCCCCCcccCCCCC---CCcccccc-CCceehHHHHhhhhh-------hcCCCCCCccccc
Q 018850 269 AAPSSCPICYEDLDYT---DSSFLPCL-CGFRLCLFCHKRILE-------EDGRCPGCRKPYE 320 (349)
Q Consensus 269 ~~~~~CPIC~E~LDlT---D~~F~PC~-CGyqiC~fC~~rI~e-------~dgrCPaCRr~Yd 320 (349)
..+.+|-||||..-.. ++.|.-.+ |-|-+|+-|..+=+. ....||.||.+-.
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 5588999999987543 35576666 999999999766653 1468999998754
No 70
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=77.94 E-value=0.34 Score=38.97 Aligned_cols=41 Identities=32% Similarity=0.878 Sum_probs=25.6
Q ss_pred CCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCcccccc
Q 018850 272 SSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEH 321 (349)
Q Consensus 272 ~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde 321 (349)
..||.|-.+|+.+. |.-.|..|..... ..+.||.|..+...
T Consensus 2 ~~CP~C~~~L~~~~--------~~~~C~~C~~~~~-~~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 2 NTCPKCQQELEWQG--------GHYHCEACQKDYK-KEAFCPDCGQPLEV 42 (70)
T ss_dssp -B-SSS-SBEEEET--------TEEEETTT--EEE-EEEE-TTT-SB-EE
T ss_pred CcCCCCCCccEEeC--------CEEECccccccce-ecccCCCcccHHHH
Confidence 57999999998877 6677888877652 46889999887743
No 71
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=77.94 E-value=1.5 Score=31.90 Aligned_cols=41 Identities=34% Similarity=0.766 Sum_probs=23.5
Q ss_pred CCCcccCCCCCCCccccccC-C-----ceehHHHHhhhhhhcCCCCCC
Q 018850 274 CPICYEDLDYTDSSFLPCLC-G-----FRLCLFCHKRILEEDGRCPGC 315 (349)
Q Consensus 274 CPIC~E~LDlTD~~F~PC~C-G-----yqiC~fC~~rI~e~dgrCPaC 315 (349)
|-||.+.-+..+....||.| | |+-|+.=|-.. ..+.+|+.|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~-~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRE-SGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHH-HT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHh-cCCCcCCCC
Confidence 67999998887767799999 5 56566444333 134568776
No 72
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=76.57 E-value=1 Score=44.30 Aligned_cols=50 Identities=34% Similarity=0.741 Sum_probs=38.4
Q ss_pred CCCCCCCcccCCCCC-CCcccccc-CCceehHHHHhhhhh-hcCCCC--CCcccc
Q 018850 270 APSSCPICYEDLDYT-DSSFLPCL-CGFRLCLFCHKRILE-EDGRCP--GCRKPY 319 (349)
Q Consensus 270 ~~~~CPIC~E~LDlT-D~~F~PC~-CGyqiC~fC~~rI~e-~dgrCP--aCRr~Y 319 (349)
.+.-||+|-.+-=+. |..|+-=| |=|++|--|..||.. --+.|| +|-+-+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 466899998665432 66666667 999999999999986 457999 996543
No 73
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.22 E-value=0.92 Score=49.49 Aligned_cols=41 Identities=22% Similarity=0.558 Sum_probs=32.2
Q ss_pred CCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCC
Q 018850 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCP 313 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCP 313 (349)
...|+||+..|-..-+--.-..|||.||.-|...+- +..||
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp 51 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP 51 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC
Confidence 467999988886654444446799999999999885 77888
No 74
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=74.16 E-value=2.5 Score=47.30 Aligned_cols=53 Identities=17% Similarity=0.274 Sum_probs=30.8
Q ss_pred CCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCccccccCcc
Q 018850 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHDQV 324 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde~~~ 324 (349)
...||+|+-.+-. -+.--+=+|+|-||--|+..+.....-||-||..|+...+
T Consensus 123 ~~~CP~Ci~s~~D-qL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 123 ENQCPNCLKSCND-QLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhhhHHHHHHHH-HhhccccccccccHHHHhhhhhhhcccCchhhhhhheeee
Confidence 3445555544321 1222344566666666665554445669999999986543
No 75
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=73.35 E-value=4 Score=29.94 Aligned_cols=44 Identities=27% Similarity=0.610 Sum_probs=28.9
Q ss_pred CCCCcccCCCCCCCccccccCC---ceehHHHHhhhhh--hcCCCCCCc
Q 018850 273 SCPICYEDLDYTDSSFLPCLCG---FRLCLFCHKRILE--EDGRCPGCR 316 (349)
Q Consensus 273 ~CPIC~E~LDlTD~~F~PC~CG---yqiC~fC~~rI~e--~dgrCPaCR 316 (349)
.|.||.+..+..+..+.||.|- .-+=.-|+.+-+. ....||-|.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899999777777788999994 1122345444443 234899884
No 76
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.32 E-value=2.4 Score=43.77 Aligned_cols=49 Identities=27% Similarity=0.546 Sum_probs=35.2
Q ss_pred CCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCcccccc
Q 018850 269 AAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEH 321 (349)
Q Consensus 269 ~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde 321 (349)
..+..|||||-. .++-.--||+|+-|.-|..+-+-...+|=.|......
T Consensus 420 sEd~lCpICyA~----pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAG----PINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecc----cchhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 457899999953 2333445689999999976655445789999776543
No 77
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=72.81 E-value=1.9 Score=39.36 Aligned_cols=26 Identities=35% Similarity=1.081 Sum_probs=21.1
Q ss_pred ccCCceehHHHHhhhhhhcCCCCCCcccc
Q 018850 291 CLCGFRLCLFCHKRILEEDGRCPGCRKPY 319 (349)
Q Consensus 291 C~CGyqiC~fC~~rI~e~dgrCPaCRr~Y 319 (349)
|+| -++|..|...-. .-+||.|+-||
T Consensus 2 ~kc-t~tC~ic~e~~~--KYKCpkC~vPY 27 (157)
T KOG2857|consen 2 CKC-TTTCVICLESEI--KYKCPKCSVPY 27 (157)
T ss_pred Ccc-eeeehhhhcchh--hccCCCCCCcc
Confidence 778 899999977442 46899999999
No 78
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=71.90 E-value=2.5 Score=42.84 Aligned_cols=40 Identities=25% Similarity=0.667 Sum_probs=31.0
Q ss_pred CCCCCCCcccCCCCCCCccccccC---CceehHHHHhhhhhhcCCCCCC
Q 018850 270 APSSCPICYEDLDYTDSSFLPCLC---GFRLCLFCHKRILEEDGRCPGC 315 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD~~F~PC~C---GyqiC~fC~~rI~e~dgrCPaC 315 (349)
....||+|.-. .-.||.| ||.+|.-|...-+...++||-=
T Consensus 299 ~~~~CpvClk~------r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT 341 (357)
T KOG0826|consen 299 DREVCPVCLKK------RQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVT 341 (357)
T ss_pred ccccChhHHhc------cCCCceEEecceEEeHHHHHHHHHhcCCCCcc
Confidence 46789999853 3457776 9999999977776688999953
No 79
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=71.66 E-value=2.4 Score=32.92 Aligned_cols=34 Identities=29% Similarity=0.609 Sum_probs=25.9
Q ss_pred ccccCCceehHHHHhhhhhhcCCCCCCccccccCcc
Q 018850 289 LPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHDQV 324 (349)
Q Consensus 289 ~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde~~~ 324 (349)
.-.+|||-||.-||.--+ -.-||.|-++++...+
T Consensus 21 ~~~pCgH~I~~~~f~~~r--YngCPfC~~~~~~~~~ 54 (55)
T PF14447_consen 21 TVLPCGHLICDNCFPGER--YNGCPFCGTPFEFDDP 54 (55)
T ss_pred ccccccceeeccccChhh--ccCCCCCCCcccCCCC
Confidence 447899999999997321 2349999999987654
No 80
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=71.08 E-value=2.6 Score=27.85 Aligned_cols=21 Identities=29% Similarity=0.906 Sum_probs=13.6
Q ss_pred CCCCcccCCCCCCCcccccc-CCce
Q 018850 273 SCPICYEDLDYTDSSFLPCL-CGFR 296 (349)
Q Consensus 273 ~CPIC~E~LDlTD~~F~PC~-CGyq 296 (349)
+||-|-..+.+.-+. |+ |||.
T Consensus 2 ~CP~C~~~V~~~~~~---Cp~CG~~ 23 (26)
T PF10571_consen 2 TCPECGAEVPESAKF---CPHCGYD 23 (26)
T ss_pred cCCCCcCCchhhcCc---CCCCCCC
Confidence 577777777654444 77 7775
No 81
>KOG2923 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.66 E-value=2.3 Score=34.23 Aligned_cols=31 Identities=29% Similarity=0.842 Sum_probs=17.8
Q ss_pred CCccccccCCceehHHHHhhhhh--hcCCCCCCc
Q 018850 285 DSSFLPCLCGFRLCLFCHKRILE--EDGRCPGCR 316 (349)
Q Consensus 285 D~~F~PC~CGyqiC~fC~~rI~e--~dgrCPaCR 316 (349)
..-++|||||-++=. =..-|.+ .-.+||.|-
T Consensus 19 ~~y~yPCpCGDrf~I-t~edL~~ge~Va~CpsCS 51 (67)
T KOG2923|consen 19 QTYYYPCPCGDRFQI-TLEDLENGEDVARCPSCS 51 (67)
T ss_pred CeEEcCCCCCCeeee-cHHHHhCCCeeecCCCce
Confidence 456799999987210 0111211 226899994
No 82
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=67.51 E-value=4.2 Score=32.50 Aligned_cols=50 Identities=22% Similarity=0.557 Sum_probs=23.3
Q ss_pred CCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCccccccCccc
Q 018850 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHDQVE 325 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde~~~~ 325 (349)
..-|++|.+-|.. .+-.=.|.|-+|.-|...-. ...||-|+.|--...+.
T Consensus 7 lLrCs~C~~~l~~---pv~l~~CeH~fCs~Ci~~~~--~~~CPvC~~Paw~qD~~ 56 (65)
T PF14835_consen 7 LLRCSICFDILKE---PVCLGGCEHIFCSSCIRDCI--GSECPVCHTPAWIQDIQ 56 (65)
T ss_dssp TTS-SSS-S--SS----B---SSS--B-TTTGGGGT--TTB-SSS--B-S-SS--
T ss_pred hcCCcHHHHHhcC---CceeccCccHHHHHHhHHhc--CCCCCCcCChHHHHHHH
Confidence 4679999988775 33345799999999975533 34699999987665543
No 83
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=64.57 E-value=0.97 Score=48.88 Aligned_cols=49 Identities=31% Similarity=0.802 Sum_probs=31.4
Q ss_pred CCCCCCCcccCC-CCCCCcc-cc---cc-CCceehHHHHhhhh--------hhcCCCCCCccccc
Q 018850 270 APSSCPICYEDL-DYTDSSF-LP---CL-CGFRLCLFCHKRIL--------EEDGRCPGCRKPYE 320 (349)
Q Consensus 270 ~~~~CPIC~E~L-DlTD~~F-~P---C~-CGyqiC~fC~~rI~--------e~dgrCPaCRr~Yd 320 (349)
-..+|+-|..+| |++|+.| +| |+ ||-++-. ...|- .....||.|.+.|.
T Consensus 67 D~a~C~~Cl~E~~dp~~Rry~YpF~nCt~CGPr~~i--~~~lpydr~~t~m~~f~~C~~C~~ey~ 129 (711)
T TIGR00143 67 DVATCSDCLEEMLDKNDRRYLYPFISCTHCGPRFTI--IEALPYDRENTSMADFPLCPDCAKEYK 129 (711)
T ss_pred chhhHHHHHHHhcCCCcccccCCcccccCCCCCeEE--eecCCCCCCCcCCCCCcCCHHHHHHhc
Confidence 356899999988 8899887 34 55 7766322 11110 01256888888884
No 84
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.81 E-value=7.8 Score=39.33 Aligned_cols=57 Identities=32% Similarity=0.638 Sum_probs=42.0
Q ss_pred CCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhh----hc--C--CCC--CCccccccCccceee
Q 018850 269 AAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILE----ED--G--RCP--GCRKPYEHDQVESEA 328 (349)
Q Consensus 269 ~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e----~d--g--rCP--aCRr~Yde~~~~~~~ 328 (349)
.....|.||++.++. .+.--.|||.+|..||..-+. .+ . .|| .|+...++++|+...
T Consensus 68 ~~~~~c~ic~~~~~~---~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~i~~~~ 134 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG---EIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDTVEKLV 134 (444)
T ss_pred CccccCCcccCCCcc---hhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCceeeeec
Confidence 457899999999987 444567999999999998543 12 1 354 688888877776554
No 85
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=61.51 E-value=7.1 Score=38.61 Aligned_cols=53 Identities=30% Similarity=0.563 Sum_probs=36.3
Q ss_pred CCCCCCcccCCCCCCCcccccc---CCceehHHHHhh-hhh--------hcCCCCCCccccccCc
Q 018850 271 PSSCPICYEDLDYTDSSFLPCL---CGFRLCLFCHKR-ILE--------EDGRCPGCRKPYEHDQ 323 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~---CGyqiC~fC~~r-I~e--------~dgrCPaCRr~Yde~~ 323 (349)
...|-||+.+++.+|-.-.-|+ |+-..=+-|++. +++ ..|.||.|++.|.=.+
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~w~~ 246 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLSWTT 246 (276)
T ss_pred chhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceeeHHH
Confidence 4689999999987776655555 443333567776 332 3588999999876433
No 86
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=60.51 E-value=3.6 Score=30.15 Aligned_cols=38 Identities=21% Similarity=0.477 Sum_probs=22.2
Q ss_pred CCCCCCcccCCCCCCCccccccCCceehHHHHh-hhhh-hcCCCCCCcccc
Q 018850 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHK-RILE-EDGRCPGCRKPY 319 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~-rI~e-~dgrCPaCRr~Y 319 (349)
.+.||+|-+.||...+. .- |.. ...+ .+..||-|...+
T Consensus 2 ~f~CP~C~~~~~~~~L~---~H--------~~~~H~~~~~~v~CPiC~~~~ 41 (54)
T PF05605_consen 2 SFTCPYCGKGFSESSLV---EH--------CEDEHRSESKNVVCPICSSRV 41 (54)
T ss_pred CcCCCCCCCccCHHHHH---HH--------HHhHCcCCCCCccCCCchhhh
Confidence 57899999977764432 11 100 1111 357899998643
No 87
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=60.35 E-value=7.8 Score=32.59 Aligned_cols=46 Identities=28% Similarity=0.605 Sum_probs=31.0
Q ss_pred CCCCCCcccCCCCCCCcccccc-----CCceehHHHHhhhhhhcCCCCCCccccc
Q 018850 271 PSSCPICYEDLDYTDSSFLPCL-----CGFRLCLFCHKRILEEDGRCPGCRKPYE 320 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~-----CGyqiC~fC~~rI~e~dgrCPaCRr~Yd 320 (349)
..+||-|...++..| -|+ |.|-+=.-|..|-+...+.||-||+++.
T Consensus 31 m~~C~eCq~~~~~~~----eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 31 MGTCPECQFGMTPGD----ECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred cCcCcccccCCCCCC----cceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 445555555554333 265 6666666787777777899999999863
No 88
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.53 E-value=4.4 Score=40.77 Aligned_cols=37 Identities=32% Similarity=0.883 Sum_probs=30.3
Q ss_pred CCCCCCCCcccCCCCCCCccccccC--CceehHHH-Hhhhhh
Q 018850 269 AAPSSCPICYEDLDYTDSSFLPCLC--GFRLCLFC-HKRILE 307 (349)
Q Consensus 269 ~~~~~CPIC~E~LDlTD~~F~PC~C--GyqiC~fC-~~rI~e 307 (349)
+.+..|-||-|.|. |..|.-||- .|.+|+-| -.-|+.
T Consensus 266 ~apLcCTLC~ERLE--DTHFVQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 266 SAPLCCTLCHERLE--DTHFVQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred CCceeehhhhhhhc--cCceeecCCCcccceecccCHHHHHh
Confidence 45789999999986 678888885 99999999 566665
No 89
>PHA02862 5L protein; Provisional
Probab=59.48 E-value=7.1 Score=35.80 Aligned_cols=44 Identities=23% Similarity=0.476 Sum_probs=30.6
Q ss_pred CCCCCcccCCCCCCCccccccCC------ceehHHHHhhhhh--hcCCCCCCcccccc
Q 018850 272 SSCPICYEDLDYTDSSFLPCLCG------FRLCLFCHKRILE--EDGRCPGCRKPYEH 321 (349)
Q Consensus 272 ~~CPIC~E~LDlTD~~F~PC~CG------yqiC~fC~~rI~e--~dgrCPaCRr~Yde 321 (349)
..|-||.++-+.. ..||.|. ||-| +.+=++ ....||-|+.+|.-
T Consensus 3 diCWIC~~~~~e~---~~PC~C~GS~K~VHq~C---L~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 3 DICWICNDVCDER---NNFCGCNEEYKVVHIKC---MQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CEEEEecCcCCCC---cccccccCcchhHHHHH---HHHHHhcCCCcCccCCCCeEEE
Confidence 5789999885432 5899992 5544 333333 45689999999953
No 90
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.17 E-value=1.8 Score=40.59 Aligned_cols=48 Identities=29% Similarity=0.515 Sum_probs=38.2
Q ss_pred CCCCCCcccCCCCCCCcccc--cc--------CCceehHHHHhhhhh-hcCCCCCCccc
Q 018850 271 PSSCPICYEDLDYTDSSFLP--CL--------CGFRLCLFCHKRILE-EDGRCPGCRKP 318 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~P--C~--------CGyqiC~fC~~rI~e-~dgrCPaCRr~ 318 (349)
...|.+|...++..+....| .. |||.+|..|...|+. .+-.||.||..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 35799999999965544444 45 999999999999975 44799999985
No 91
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.02 E-value=5.2 Score=40.39 Aligned_cols=47 Identities=23% Similarity=0.740 Sum_probs=34.2
Q ss_pred CCCCCCCCcccCCCCCC-CccccccCCceehHHHHhhhhhhcCCCCCC
Q 018850 269 AAPSSCPICYEDLDYTD-SSFLPCLCGFRLCLFCHKRILEEDGRCPGC 315 (349)
Q Consensus 269 ~~~~~CPIC~E~LDlTD-~~F~PC~CGyqiC~fC~~rI~e~dgrCPaC 315 (349)
+.-..||+|.--+.++. =+..-|.||||+|.-|....+..+.-|..|
T Consensus 304 ~~wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 304 KRWRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred HhcCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 34568999988877765 556779999999999986655445545443
No 92
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.28 E-value=7.7 Score=40.47 Aligned_cols=46 Identities=28% Similarity=0.563 Sum_probs=39.1
Q ss_pred CCCCCCcccCCCCCCCcccccc-CCceehHHHHhhhhh---hcCCCCCCcc
Q 018850 271 PSSCPICYEDLDYTDSSFLPCL-CGFRLCLFCHKRILE---EDGRCPGCRK 317 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~-CGyqiC~fC~~rI~e---~dgrCPaCRr 317 (349)
--.|-|| +++-+.|..+.|-. |||.|=..|+..+.+ .+.-||-||-
T Consensus 4 ~A~C~Ic-~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~i 53 (465)
T KOG0827|consen 4 MAECHIC-IDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQI 53 (465)
T ss_pred cceeeEe-ccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceee
Confidence 4579999 88888899999987 999999999999987 3456999993
No 93
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=52.11 E-value=4.6 Score=33.67 Aligned_cols=25 Identities=32% Similarity=0.882 Sum_probs=17.1
Q ss_pred eehHHHHhhh--hh------hcCCCCCCccccc
Q 018850 296 RLCLFCHKRI--LE------EDGRCPGCRKPYE 320 (349)
Q Consensus 296 qiC~fC~~rI--~e------~dgrCPaCRr~Yd 320 (349)
.+|+-++|.. .+ ..+.||-||+.+.
T Consensus 49 G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 49 GYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred HHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 3677776654 22 3489999999763
No 94
>PRK11595 DNA utilization protein GntX; Provisional
Probab=51.47 E-value=14 Score=33.96 Aligned_cols=41 Identities=24% Similarity=0.659 Sum_probs=26.0
Q ss_pred CCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCccccc
Q 018850 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYE 320 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yd 320 (349)
+..|++|-+.+... ...||-.|+..|.-....||.|-++..
T Consensus 5 P~~C~~C~~~~~~~---------~~~lC~~C~~~l~~~~~~C~~Cg~~~~ 45 (227)
T PRK11595 5 PGLCWLCRMPLALS---------HWGICSVCSRALRTLKTCCPQCGLPAT 45 (227)
T ss_pred CCcCccCCCccCCC---------CCcccHHHHhhCCcccCcCccCCCcCC
Confidence 56788887766432 124788888777433457888876643
No 95
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=51.38 E-value=8.5 Score=32.40 Aligned_cols=48 Identities=21% Similarity=0.440 Sum_probs=31.7
Q ss_pred CCCCCCCcccCCCCCCCcccccc-CCceehHHHHhhhhh-hcCCCCCCcc
Q 018850 270 APSSCPICYEDLDYTDSSFLPCL-CGFRLCLFCHKRILE-EDGRCPGCRK 317 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD~~F~PC~-CGyqiC~fC~~rI~e-~dgrCPaCRr 317 (349)
....|.+|..+|.+-+-.-..|. |++.||.-|-..... ..-+|-.|++
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYSKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEETSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCcCCCCCCEEChhhHH
Confidence 35689999999987765557776 999999988554322 2236766654
No 96
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=50.46 E-value=10 Score=29.78 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=18.8
Q ss_pred CCCccccccCCCC-CCCCCCcccCCCCC
Q 018850 258 GGVPWACNNVLAA-PSSCPICYEDLDYT 284 (349)
Q Consensus 258 ~g~~w~~~~~~~~-~~~CPIC~E~LDlT 284 (349)
+=++||..+-... ...||||-.+|--.
T Consensus 25 ~C~gWmR~nFs~~~~p~CPlC~s~M~~~ 52 (59)
T PF14169_consen 25 DCNGWMRDNFSFEEEPVCPLCKSPMVSG 52 (59)
T ss_pred CCCcccccccccCCCccCCCcCCccccc
Confidence 3567877754433 47999999988653
No 97
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=50.19 E-value=36 Score=35.07 Aligned_cols=96 Identities=30% Similarity=0.516 Sum_probs=56.5
Q ss_pred CCCCCCCCcccccCCCCCCcC----------CC---CC--CCCccccc-cCCCCCCCCCCcccCC---------------
Q 018850 233 AFRPQSLPNLAKQRSFPAADR----------HF---GQ--GGVPWACN-NVLAAPSSCPICYEDL--------------- 281 (349)
Q Consensus 233 ~~RP~slpnlsKQ~sfp~~~~----------~~---g~--~g~~w~~~-~~~~~~~~CPIC~E~L--------------- 281 (349)
+-|||+-=+|+--. ||...| +| || |-..|+.. +.-...-+||+|.+.=
T Consensus 288 A~RPQCPVglnTL~-~P~~~~~~~~~~~QP~vYl~CGHV~G~H~WG~~e~~g~~~r~CPmC~~~gp~V~L~lG~E~~f~v 366 (429)
T KOG3842|consen 288 AARPQCPVGLNTLA-FPSKRRKRVVDEKQPWVYLNCGHVHGYHNWGVRENTGQRERECPMCRVVGPYVPLWLGCEAGFYV 366 (429)
T ss_pred ccCCCCCcccceee-cccccccccccccCCeEEEeccccccccccccccccCcccCcCCeeeeecceeeeeccccceeEe
Confidence 55888877777544 886432 11 32 44568766 3333577999997642
Q ss_pred CC--CCCccccccCCceehHH----HHhhhh--h----hcCCCCCCccccccCccceeeeeec
Q 018850 282 DY--TDSSFLPCLCGFRLCLF----CHKRIL--E----EDGRCPGCRKPYEHDQVESEAIVQG 332 (349)
Q Consensus 282 Dl--TD~~F~PC~CGyqiC~f----C~~rI~--e----~dgrCPaCRr~Yde~~~~~~~~~~~ 332 (349)
|. -+..|.| |||- |-. =|.+|- . ...-||+|-.++..+.--++.|.++
T Consensus 367 D~G~pthaF~P--CGHv-~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge~~~ikliFq~ 426 (429)
T KOG3842|consen 367 DAGPPTHAFNP--CGHV-CSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGEQGYIKLIFQG 426 (429)
T ss_pred cCCCcccccCC--cccc-cchhhhhHhhcCcCCCccccccccCcchhhhhccCCceEEEEEec
Confidence 22 2455555 5654 221 144442 1 4578999999888776655655443
No 98
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=48.82 E-value=5.1 Score=43.82 Aligned_cols=48 Identities=25% Similarity=0.589 Sum_probs=37.0
Q ss_pred CCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhh---hcCCCCCCcccccc
Q 018850 270 APSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILE---EDGRCPGCRKPYEH 321 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e---~dgrCPaCRr~Yde 321 (349)
...+||||++.+=.- ....|-+-||.||++.+.+ ...+||-|+...+.
T Consensus 20 k~lEc~ic~~~~~~p----~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 20 KILECPICLEHVKEP----SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred hhccCCceeEEeecc----chhhhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 478999999876332 3478999999999999986 24689999865543
No 99
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=48.74 E-value=9.4 Score=42.20 Aligned_cols=31 Identities=29% Similarity=0.820 Sum_probs=21.5
Q ss_pred cCCCCCCCCCCcccCC-CCCCCcc-cc---cc-CCce
Q 018850 266 NVLAAPSSCPICYEDL-DYTDSSF-LP---CL-CGFR 296 (349)
Q Consensus 266 ~~~~~~~~CPIC~E~L-DlTD~~F-~P---C~-CGyq 296 (349)
.++.-..+|+-|.++| |..++.| +| |+ ||-+
T Consensus 96 ~I~pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPR 132 (750)
T COG0068 96 QIPPDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPR 132 (750)
T ss_pred ccCCchhhhHHHHHHhcCCCCcceeccccccCCCCcc
Confidence 4445567999999886 8888876 34 54 6643
No 100
>PHA03096 p28-like protein; Provisional
Probab=48.08 E-value=12 Score=36.87 Aligned_cols=47 Identities=19% Similarity=0.335 Sum_probs=34.7
Q ss_pred CCCCCcccCCC---CCCCccccc-cCCceehHHHHhhhhh---hcCCCCCCccc
Q 018850 272 SSCPICYEDLD---YTDSSFLPC-LCGFRLCLFCHKRILE---EDGRCPGCRKP 318 (349)
Q Consensus 272 ~~CPIC~E~LD---lTD~~F~PC-~CGyqiC~fC~~rI~e---~dgrCPaCRr~ 318 (349)
..|-||+|..- ..+..|--. .|-|.+|++|....+. ..-.||.||+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~ 232 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL 232 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence 67999999764 447777655 4999999999876653 33467777764
No 101
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=47.63 E-value=7 Score=41.21 Aligned_cols=46 Identities=33% Similarity=0.660 Sum_probs=37.0
Q ss_pred CCCCccccccCCCCCCCCCCcccCCCCCCCcccccc-CCceehHHHHhhhh
Q 018850 257 QGGVPWACNNVLAAPSSCPICYEDLDYTDSSFLPCL-CGFRLCLFCHKRIL 306 (349)
Q Consensus 257 ~~g~~w~~~~~~~~~~~CPIC~E~LDlTD~~F~PC~-CGyqiC~fC~~rI~ 306 (349)
+-.++|-+.+. ...||+|.+.|.+|-+.. =|. ||--+|.+|-.-|-
T Consensus 169 qsvVpW~DDs~---V~~CP~Ca~~F~l~rRrH-HCRLCG~VmC~~C~k~iS 215 (505)
T KOG1842|consen 169 QSVVPWLDDSS---VQFCPECANSFGLTRRRH-HCRLCGRVMCRDCSKFIS 215 (505)
T ss_pred hccccccCCCc---ccccccccchhhhHHHhh-hhhhcchHHHHHHHHhcC
Confidence 34689988765 468999999999987763 354 99999999988874
No 102
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=46.98 E-value=8.5 Score=27.57 Aligned_cols=31 Identities=29% Similarity=0.756 Sum_probs=17.6
Q ss_pred CCCCC--cccCCCCCCCcc---cccc-CCceehHHHH
Q 018850 272 SSCPI--CYEDLDYTDSSF---LPCL-CGFRLCLFCH 302 (349)
Q Consensus 272 ~~CPI--C~E~LDlTD~~F---~PC~-CGyqiC~fC~ 302 (349)
..||- |-..+-..+..- .-|+ |++++|.-|.
T Consensus 19 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~ 55 (64)
T PF01485_consen 19 RWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCG 55 (64)
T ss_dssp C--TTSST---ECS-SSTTS--CCTTSCCSEECSSST
T ss_pred cCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccC
Confidence 37877 877775554443 4599 9999998773
No 103
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.95 E-value=7.3 Score=36.63 Aligned_cols=28 Identities=43% Similarity=0.930 Sum_probs=22.2
Q ss_pred CCCCCCCCcccCCCCCCCcc-ccccCCce
Q 018850 269 AAPSSCPICYEDLDYTDSSF-LPCLCGFR 296 (349)
Q Consensus 269 ~~~~~CPIC~E~LDlTD~~F-~PC~CGyq 296 (349)
...-+|-||+|+|..-|... +||-|=|+
T Consensus 175 ddkGECvICLEdL~~GdtIARLPCLCIYH 203 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLPCLCIYH 203 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccceEEEee
Confidence 44669999999999988654 78988664
No 104
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=44.26 E-value=11 Score=36.44 Aligned_cols=46 Identities=28% Similarity=0.659 Sum_probs=33.8
Q ss_pred CCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCccc
Q 018850 269 AAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKP 318 (349)
Q Consensus 269 ~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~ 318 (349)
..++.|-||.+++-- -.--.|||.+|--|+-+-......|--|-+.
T Consensus 194 ~IPF~C~iCKkdy~s----pvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~ 239 (259)
T COG5152 194 KIPFLCGICKKDYES----PVVTECGHSFCSLCAIRKYQKGDECGVCGKA 239 (259)
T ss_pred CCceeehhchhhccc----hhhhhcchhHHHHHHHHHhccCCcceecchh
Confidence 457799999998862 2336799999999976554445578888654
No 105
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=44.09 E-value=12 Score=29.35 Aligned_cols=35 Identities=29% Similarity=0.639 Sum_probs=26.4
Q ss_pred CCCCCCCCCcccCCCCCCCccccccCCceehHHHHhh
Q 018850 268 LAAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKR 304 (349)
Q Consensus 268 ~~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~r 304 (349)
+.....|++|-..|.. ..|.-.|||+-+-..|..|
T Consensus 75 i~~~~~C~vC~k~l~~--~~f~~~p~~~v~H~~C~~r 109 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGN--SVFVVFPCGHVVHYSCIKR 109 (109)
T ss_pred ECCCCCccCcCCcCCC--ceEEEeCCCeEEecccccC
Confidence 3456789999999987 4555566788888888764
No 106
>PF15616 TerY-C: TerY-C metal binding domain
Probab=41.32 E-value=13 Score=33.02 Aligned_cols=45 Identities=29% Similarity=0.688 Sum_probs=31.8
Q ss_pred cCCCCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCccccc
Q 018850 266 NVLAAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYE 320 (349)
Q Consensus 266 ~~~~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yd 320 (349)
+-+.....||-|-. +..|.-|.||.-+|. +- +....||+|-+.-.
T Consensus 72 seL~g~PgCP~CGn-----~~~fa~C~CGkl~Ci---~g--~~~~~CPwCg~~g~ 116 (131)
T PF15616_consen 72 SELIGAPGCPHCGN-----QYAFAVCGCGKLFCI---DG--EGEVTCPWCGNEGS 116 (131)
T ss_pred HHhcCCCCCCCCcC-----hhcEEEecCCCEEEe---CC--CCCEECCCCCCeee
Confidence 33444589999984 457899999998654 33 23568999987543
No 107
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=41.12 E-value=15 Score=41.36 Aligned_cols=59 Identities=25% Similarity=0.380 Sum_probs=40.9
Q ss_pred CCCCCCCCcccCCCCCCCccccccCCceehHHHH---hhhhh---hc-CCCCCCccccccCcccee
Q 018850 269 AAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCH---KRILE---ED-GRCPGCRKPYEHDQVESE 327 (349)
Q Consensus 269 ~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~---~rI~e---~d-grCPaCRr~Yde~~~~~~ 327 (349)
+...+|-||+|.++.|+-.|-==.|=+-|=++|. -+-.+ .+ -|||+|+..|...++.|.
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~~~~~~y~ 254 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSKTVPKTYL 254 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhccCCcccc
Confidence 4577999999999999988653346555555663 33333 12 499999988877776553
No 108
>PF12773 DZR: Double zinc ribbon
Probab=40.94 E-value=27 Score=24.71 Aligned_cols=38 Identities=21% Similarity=0.565 Sum_probs=22.2
Q ss_pred CCCcccCCCCCCCccccccCCceehHHHHhhhh--h-hcCCCCCCcccccc
Q 018850 274 CPICYEDLDYTDSSFLPCLCGFRLCLFCHKRIL--E-EDGRCPGCRKPYEH 321 (349)
Q Consensus 274 CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~--e-~dgrCPaCRr~Yde 321 (349)
||-|-+.++.. .++|..|-..|. . ....||.|...+..
T Consensus 1 Cp~Cg~~~~~~----------~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~ 41 (50)
T PF12773_consen 1 CPHCGTPNPDD----------AKFCPHCGTPLPPPDQSKKICPNCGAENPP 41 (50)
T ss_pred CCCcCCcCCcc----------ccCChhhcCChhhccCCCCCCcCCcCCCcC
Confidence 56666665543 334556666665 2 34578888776543
No 109
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=40.23 E-value=12 Score=28.69 Aligned_cols=27 Identities=41% Similarity=0.862 Sum_probs=20.7
Q ss_pred CceehHHHHhhhhhhcCCCCCCccccc
Q 018850 294 GFRLCLFCHKRILEEDGRCPGCRKPYE 320 (349)
Q Consensus 294 GyqiC~fC~~rI~e~dgrCPaCRr~Yd 320 (349)
.|-+|+-|++.++....+||.|-++.-
T Consensus 20 dHYLCl~CLt~ml~~s~~C~iC~~~LP 46 (50)
T PF03854_consen 20 DHYLCLNCLTLMLSRSDRCPICGKPLP 46 (50)
T ss_dssp S-EEEHHHHHHT-SSSSEETTTTEE--
T ss_pred chhHHHHHHHHHhccccCCCcccCcCc
Confidence 678999999999888889999987763
No 110
>PF14768 RPA_interact_C: Replication protein A interacting C-terminal
Probab=39.03 E-value=21 Score=28.64 Aligned_cols=28 Identities=32% Similarity=0.758 Sum_probs=20.3
Q ss_pred CCCCcccCCCCCCCccccccCCceehHH
Q 018850 273 SCPICYEDLDYTDSSFLPCLCGFRLCLF 300 (349)
Q Consensus 273 ~CPIC~E~LDlTD~~F~PC~CGyqiC~f 300 (349)
.||||.-..=.....+.-|+||.+|=..
T Consensus 1 iCPVC~~~~L~~~~~~i~C~Cgl~l~~~ 28 (82)
T PF14768_consen 1 ICPVCQKGNLRENSNVISCSCGLRLNTQ 28 (82)
T ss_pred CCCccCCCcccccCCeEECCCccEEecC
Confidence 4999976544446778889999886444
No 111
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=38.31 E-value=8.4 Score=28.29 Aligned_cols=17 Identities=29% Similarity=0.890 Sum_probs=8.9
Q ss_pred hcCCCCCCccccccCcc
Q 018850 308 EDGRCPGCRKPYEHDQV 324 (349)
Q Consensus 308 ~dgrCPaCRr~Yde~~~ 324 (349)
.++.||-|.++++++..
T Consensus 19 ~~~~CPlC~r~l~~e~~ 35 (54)
T PF04423_consen 19 AKGCCPLCGRPLDEEHR 35 (54)
T ss_dssp -SEE-TTT--EE-HHHH
T ss_pred CCCcCCCCCCCCCHHHH
Confidence 44599999999987543
No 112
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.13 E-value=31 Score=28.74 Aligned_cols=48 Identities=25% Similarity=0.558 Sum_probs=29.5
Q ss_pred CCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCcccccc
Q 018850 272 SSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEH 321 (349)
Q Consensus 272 ~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde 321 (349)
..|--|--+|...-....-|.=-..+|.-|....+ .|.||+|--.+-.
T Consensus 6 PnCECCDrDLpp~s~dA~ICtfEcTFCadCae~~l--~g~CPnCGGelv~ 53 (84)
T COG3813 6 PNCECCDRDLPPDSTDARICTFECTFCADCAENRL--HGLCPNCGGELVA 53 (84)
T ss_pred CCCcccCCCCCCCCCceeEEEEeeehhHhHHHHhh--cCcCCCCCchhhc
Confidence 45666766775544444556655566776755333 8999999544433
No 113
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=37.79 E-value=14 Score=26.61 Aligned_cols=30 Identities=33% Similarity=0.890 Sum_probs=19.8
Q ss_pred CCC--CcccCCCCC---CCccccc-cCCceehHHHH
Q 018850 273 SCP--ICYEDLDYT---DSSFLPC-LCGFRLCLFCH 302 (349)
Q Consensus 273 ~CP--IC~E~LDlT---D~~F~PC-~CGyqiC~fC~ 302 (349)
.|| -|-.-+... .....-| .||+.+|..|.
T Consensus 20 ~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~ 55 (64)
T smart00647 20 WCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCK 55 (64)
T ss_pred CCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCC
Confidence 577 664444333 3455779 79999998773
No 114
>PF15325 MRI: Modulator of retrovirus infection
Probab=36.75 E-value=52 Score=28.65 Aligned_cols=36 Identities=33% Similarity=0.435 Sum_probs=17.7
Q ss_pred CCCCCCcccCCCCCCCcccCCCCCccccCCcchhccc
Q 018850 112 GTNPGTNFIGSSSSSSSVSGSSGGGCCSGSITEEEEE 148 (349)
Q Consensus 112 ~~~~~~~f~g~s~~sss~SssSs~~~cSgsitEee~d 148 (349)
+.++++.--.-|.+.+.-..+|..+ ||++--|||||
T Consensus 59 ~Ed~g~d~~~pglsps~~p~~s~s~-cs~speeeEde 94 (106)
T PF15325_consen 59 EEDSGNDAPAPGLSPSQGPGGSDSA-CSRSPEEEEDE 94 (106)
T ss_pred cccccccCCCCCCCCCCCCCCCCcc-cCCCcccchhh
Confidence 3454444422233233334455555 88887665543
No 115
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=36.26 E-value=20 Score=31.35 Aligned_cols=25 Identities=32% Similarity=0.873 Sum_probs=21.1
Q ss_pred CCCCCcccCCCCCCCcccccc-CCce
Q 018850 272 SSCPICYEDLDYTDSSFLPCL-CGFR 296 (349)
Q Consensus 272 ~~CPIC~E~LDlTD~~F~PC~-CGyq 296 (349)
..||-|-.++...|-..+-|| |+|.
T Consensus 3 p~CP~C~seytY~dg~~~iCpeC~~E 28 (109)
T TIGR00686 3 PPCPKCNSEYTYHDGTQLICPSCLYE 28 (109)
T ss_pred CcCCcCCCcceEecCCeeECcccccc
Confidence 579999999999998888887 6666
No 116
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=36.12 E-value=17 Score=35.13 Aligned_cols=42 Identities=26% Similarity=0.626 Sum_probs=30.8
Q ss_pred CCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCcccc
Q 018850 274 CPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPY 319 (349)
Q Consensus 274 CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Y 319 (349)
|=-|.--=+ -..|+...|+|-+|.-|...-. .-.||-|+++.
T Consensus 6 Cn~C~~~~~--~~~f~LTaC~HvfC~~C~k~~~--~~~C~lCkk~i 47 (233)
T KOG4739|consen 6 CNKCFRFPS--QDPFFLTACRHVFCEPCLKASS--PDVCPLCKKSI 47 (233)
T ss_pred eccccccCC--CCceeeeechhhhhhhhcccCC--cccccccccee
Confidence 554444333 5689999999999999977553 12899999974
No 117
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=35.69 E-value=7.6 Score=32.27 Aligned_cols=51 Identities=22% Similarity=0.356 Sum_probs=17.6
Q ss_pred CCCCCCcccCCCCCCCccccccCCceehH--HHHhhhhh-hcCCCCCCcccccc
Q 018850 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCL--FCHKRILE-EDGRCPGCRKPYEH 321 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~CGyqiC~--fC~~rI~e-~dgrCPaCRr~Yde 321 (349)
.+.||||-+.++..|..+.-|.=||..=+ -=+-.|.. ....|+.|.+.|-.
T Consensus 14 ~E~C~~C~~~i~~~~~~~~~C~~GH~w~RC~lT~l~i~~~~~r~C~~C~~~~l~ 67 (99)
T PF12660_consen 14 FEKCPICGAPIPFDDLDEAQCENGHVWPRCALTFLPIQTPGVRVCPVCGRRALD 67 (99)
T ss_dssp ---------------SSEEE-TTS-EEEB-SSS-SBS-SS-EEE-TTT--EEE-
T ss_pred cccccccccccccCCcCEeECCCCCEEeeeeeeeeeeccCCeeEcCCCCCEEec
Confidence 58999999999999988888998887422 22333444 23689999988854
No 118
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.37 E-value=8.9 Score=38.75 Aligned_cols=36 Identities=36% Similarity=0.857 Sum_probs=0.0
Q ss_pred CCCcccCCCCCCCccccccCCcee-hHHHHhhhhhhcCCCCCCcc
Q 018850 274 CPICYEDLDYTDSSFLPCLCGFRL-CLFCHKRILEEDGRCPGCRK 317 (349)
Q Consensus 274 CPIC~E~LDlTD~~F~PC~CGyqi-C~fC~~rI~e~dgrCPaCRr 317 (349)
|.||| ..-+.-+-..|||-+ |.-|-.+|- -||-||+
T Consensus 303 C~ICm----DaP~DCvfLeCGHmVtCt~CGkrm~----eCPICRq 339 (350)
T KOG4275|consen 303 CAICM----DAPRDCVFLECGHMVTCTKCGKRMN----ECPICRQ 339 (350)
T ss_pred HHHHh----cCCcceEEeecCcEEeehhhccccc----cCchHHH
No 119
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.19 E-value=29 Score=38.15 Aligned_cols=48 Identities=31% Similarity=0.690 Sum_probs=37.0
Q ss_pred CCCCcccCCCCCCCccccccCCc-eehHHHHhhhhh--hcCCC----CCCccccccCcc
Q 018850 273 SCPICYEDLDYTDSSFLPCLCGF-RLCLFCHKRILE--EDGRC----PGCRKPYEHDQV 324 (349)
Q Consensus 273 ~CPIC~E~LDlTD~~F~PC~CGy-qiC~fC~~rI~e--~dgrC----PaCRr~Yde~~~ 324 (349)
.|+||+..+|. +.-=.||| ++|--|.-|+.. ++.+| |.||+.+....+
T Consensus 2 ~c~ic~~s~~~----~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~~s~ 56 (669)
T KOG2231|consen 2 SCAICAFSPDF----VGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVETKSN 56 (669)
T ss_pred CcceeecCccc----cccccccccccchhhhhhhhhhcccccccccCcccccceeeecc
Confidence 59999999885 34457999 999999999976 44555 999997655443
No 120
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=34.41 E-value=22 Score=33.11 Aligned_cols=25 Identities=24% Similarity=0.634 Sum_probs=19.9
Q ss_pred CCCCCcccCCCCCCCccccccCCcee
Q 018850 272 SSCPICYEDLDYTDSSFLPCLCGFRL 297 (349)
Q Consensus 272 ~~CPIC~E~LDlTD~~F~PC~CGyqi 297 (349)
+.||+|-++|...+.. .=|..||++
T Consensus 3 ~~CP~C~~~l~~~~~~-~~C~~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENS-WICPQNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCE-EEcCCCCCC
Confidence 5799999999876655 558888874
No 121
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=33.81 E-value=19 Score=25.28 Aligned_cols=26 Identities=35% Similarity=0.903 Sum_probs=22.3
Q ss_pred CCCCCcccCCCCCCCccccc-cCCcee
Q 018850 272 SSCPICYEDLDYTDSSFLPC-LCGFRL 297 (349)
Q Consensus 272 ~~CPIC~E~LDlTD~~F~PC-~CGyqi 297 (349)
+-|+.|-+.+..++--|+-| .||+++
T Consensus 9 ~~C~~C~~~~~~~~dG~~yC~~cG~~~ 35 (36)
T PF11781_consen 9 EPCPVCGSRWFYSDDGFYYCDRCGHQS 35 (36)
T ss_pred CcCCCCCCeEeEccCCEEEhhhCceEc
Confidence 45999999988888888999 899874
No 122
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=33.66 E-value=29 Score=30.11 Aligned_cols=26 Identities=35% Similarity=0.899 Sum_probs=18.5
Q ss_pred ehHHHHhhhh--h--hcCCCCCCccccccC
Q 018850 297 LCLFCHKRIL--E--EDGRCPGCRKPYEHD 322 (349)
Q Consensus 297 iC~fC~~rI~--e--~dgrCPaCRr~Yde~ 322 (349)
||--|.+-|. + +-+.||.|+.+++..
T Consensus 64 iCGvC~~~LT~~EY~~~~~Cp~C~spFNp~ 93 (105)
T COG4357 64 ICGVCRKLLTRAEYGMCGSCPYCQSPFNPG 93 (105)
T ss_pred EhhhhhhhhhHHHHhhcCCCCCcCCCCCcc
Confidence 4555777774 2 357899999998753
No 123
>PF01049 Cadherin_C: Cadherin cytoplasmic region; InterPro: IPR000233 Cadherins are transmembrane glycoproteins vital in calcium-dependent cell-cell adhesion during tissue differentiation []. Cadherins cluster to form foci of homophilic binding units. A key determinant to the strength of the binding that it is mediated by cadherins is the juxtamembrane region of the cadherin. This region induces clustering and also binds to the protein p120ctn []. The cytoplasmic region is highly conserved in sequence and has been shown experimentally to regulate the cell-cell binding function of the extracellular domain of E-cadherin, possibly through interaction with the cytoskeleton []. This domain is found upstream of the cadherin domain IPR002126 from INTERPRO.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2KOH_B 3IFQ_D 1I7X_D 1I7W_D 3L6Y_F 3L6X_B.
Probab=31.89 E-value=16 Score=32.24 Aligned_cols=36 Identities=39% Similarity=0.621 Sum_probs=8.8
Q ss_pred CCCCCCCcccCCCCCccccCCcchhccccCccccHHHHHHHh
Q 018850 121 GSSSSSSSVSGSSGGGCCSGSITEEEEEDGCLDDWEAVADAL 162 (349)
Q Consensus 121 g~s~~sss~SssSs~~~cSgsitEee~dDgclDDWEAvADAL 162 (349)
|.+|...||| |-.||+ +++|++-+.|+||.-=-.-|
T Consensus 107 G~gS~agSLS---SL~S~s---~~~~~~~~~L~~wGPkF~~L 142 (149)
T PF01049_consen 107 GQGSSAGSLS---SLESCS---SDEEQDYDFLDDWGPKFRKL 142 (149)
T ss_dssp ------TT---------------------GGGGGS-GGGHHH
T ss_pred CCCCcCCCcc---cccCCC---cccccCchhhhhcChhHHHH
Confidence 6665333333 333555 66777788999997433333
No 124
>PRK10220 hypothetical protein; Provisional
Probab=31.43 E-value=29 Score=30.41 Aligned_cols=26 Identities=27% Similarity=0.796 Sum_probs=21.1
Q ss_pred CCCCCCcccCCCCCCCcccccc-CCce
Q 018850 271 PSSCPICYEDLDYTDSSFLPCL-CGFR 296 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~-CGyq 296 (349)
..-||-|-.++...|-..+-|| |+|.
T Consensus 3 lP~CP~C~seytY~d~~~~vCpeC~hE 29 (111)
T PRK10220 3 LPHCPKCNSEYTYEDNGMYICPECAHE 29 (111)
T ss_pred CCcCCCCCCcceEcCCCeEECCcccCc
Confidence 3679999999999998887777 6665
No 125
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=30.13 E-value=75 Score=25.09 Aligned_cols=47 Identities=26% Similarity=0.634 Sum_probs=31.7
Q ss_pred CCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCcccc
Q 018850 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPY 319 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Y 319 (349)
-..|-.|-.+|......-+-|.=--.+|.-|...++ .+.||+|--.+
T Consensus 5 rpnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l--~~~CPNCgGel 51 (57)
T PF06906_consen 5 RPNCECCDKDLPPDSPEAYICSFECTFCADCAETML--NGVCPNCGGEL 51 (57)
T ss_pred CCCccccCCCCCCCCCcceEEeEeCcccHHHHHHHh--cCcCcCCCCcc
Confidence 456888888887766566667633355666666554 89999994433
No 126
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=29.79 E-value=18 Score=27.94 Aligned_cols=23 Identities=39% Similarity=1.060 Sum_probs=11.6
Q ss_pred hHHHHhhhhh-hc-CCCCCCccccc
Q 018850 298 CLFCHKRILE-ED-GRCPGCRKPYE 320 (349)
Q Consensus 298 C~fC~~rI~e-~d-grCPaCRr~Yd 320 (349)
|..|-.+|+. .+ ..||.|..||-
T Consensus 8 C~~Cg~~~~~~dDiVvCp~CgapyH 32 (54)
T PF14446_consen 8 CPVCGKKFKDGDDIVVCPECGAPYH 32 (54)
T ss_pred ChhhCCcccCCCCEEECCCCCCccc
Confidence 4445555542 22 35666666663
No 127
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=29.56 E-value=37 Score=33.57 Aligned_cols=47 Identities=30% Similarity=0.513 Sum_probs=36.8
Q ss_pred CCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCcc
Q 018850 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRK 317 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr 317 (349)
+..||||.|.|-+.-......+|||.+=+-||....-..-.||-|-+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 44599999999887777777889998777777766544478999987
No 128
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PHA03308 transcriptional regulator ICP4; Provisional
Probab=27.36 E-value=38 Score=38.45 Aligned_cols=15 Identities=33% Similarity=0.576 Sum_probs=8.9
Q ss_pred HHhhhhh---hcCCCCCC
Q 018850 301 CHKRILE---EDGRCPGC 315 (349)
Q Consensus 301 C~~rI~e---~dgrCPaC 315 (349)
||..-+. +..||-+=
T Consensus 1421 cwsaprgatpeslrctgh 1438 (1463)
T PHA03308 1421 CWSAPRGATPESLRCTGH 1438 (1463)
T ss_pred eccCCCCCCccceeecCc
Confidence 7776653 44566553
No 130
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=27.36 E-value=21 Score=37.16 Aligned_cols=64 Identities=17% Similarity=0.383 Sum_probs=0.0
Q ss_pred CCcccccc-CCCCCCCCCCcccCC---------------CCCCCccccccCCcee---h--HHHHhhhhh----hcCCCC
Q 018850 259 GVPWACNN-VLAAPSSCPICYEDL---------------DYTDSSFLPCLCGFRL---C--LFCHKRILE----EDGRCP 313 (349)
Q Consensus 259 g~~w~~~~-~~~~~~~CPIC~E~L---------------DlTD~~F~PC~CGyqi---C--~fC~~rI~e----~dgrCP 313 (349)
-..|.... .-...-+||||...= |..--.+.=.||||-. . .|+--.|-. ....||
T Consensus 315 ~h~Wg~~~~~~~~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CP 394 (416)
T PF04710_consen 315 YHNWGQDSDRDPRSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACP 394 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ecccccccccccccccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCC
Confidence 34575432 222478999998542 2211222236788863 1 233223322 347899
Q ss_pred CCccccccC
Q 018850 314 GCRKPYEHD 322 (349)
Q Consensus 314 aCRr~Yde~ 322 (349)
+|-.+++.+
T Consensus 395 FCa~~L~g~ 403 (416)
T PF04710_consen 395 FCATPLDGE 403 (416)
T ss_dssp ---------
T ss_pred cccCcccCC
Confidence 999988754
No 131
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=27.34 E-value=32 Score=25.39 Aligned_cols=44 Identities=27% Similarity=0.642 Sum_probs=21.2
Q ss_pred CCCCCCcccCCCCCCCccccccCCceehHHHHhhhhh-----hcCCCCCCccc
Q 018850 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILE-----EDGRCPGCRKP 318 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e-----~dgrCPaCRr~ 318 (349)
...|||....|.. --+--.|.|--| |-+...++ ..-+||-|.++
T Consensus 2 sL~CPls~~~i~~---P~Rg~~C~H~~C-FDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRI---PVRGKNCKHLQC-FDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SS---EEEETT--SS---EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEe---CccCCcCcccce-ECHHHHHHHhhccCCeECcCCcCc
Confidence 3579999888765 444566888877 56655554 12479999875
No 132
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=27.13 E-value=44 Score=21.54 Aligned_cols=11 Identities=36% Similarity=0.851 Sum_probs=5.2
Q ss_pred CCCCcccCCCC
Q 018850 273 SCPICYEDLDY 283 (349)
Q Consensus 273 ~CPIC~E~LDl 283 (349)
.||-|-..++.
T Consensus 4 ~Cp~Cg~~~~~ 14 (26)
T PF13248_consen 4 FCPNCGAEIDP 14 (26)
T ss_pred CCcccCCcCCc
Confidence 45555554433
No 133
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=26.90 E-value=40 Score=25.61 Aligned_cols=42 Identities=19% Similarity=0.385 Sum_probs=22.9
Q ss_pred CCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhh--hcCCCCC
Q 018850 270 APSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILE--EDGRCPG 314 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e--~dgrCPa 314 (349)
....|||...+|.. -.+-=.|||.+..-....++. ...+||.
T Consensus 10 ~~~~CPiT~~~~~~---PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFED---PVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SS---EEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhC---CcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 47899999988753 112237899987777666653 3468997
No 134
>PF02977 CarbpepA_inh: Carboxypeptidase A inhibitor; InterPro: IPR004231 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family is represented by the well-characterised metallocarboxypeptidase A inhibitor (MCPI) from potatoes, which belongs to the MEROPS inhibitor family I37, clan IE. It inhibits metallopeptidases belonging to MEROPS peptidase family M14, carboxypeptidase A. In Russet Burbank potatoes, it is a mixture of approximately equal amounts of two polypeptide chains containing 38 or 39 amino acid residues. The chains differ in their amino terminal sequence only [] and are resistant to fragmentation by proteases []. The structure of the complex between bovine carboxypeptidase A and the 39-amino-acid carboxypeptidase A inhibitor from potatoes has been determined at 2.5-A resolution []. The potato inhibitor is synthesised as a precursor, having a 29 residue N-terminal signal peptide, a 27 residue pro-peptide, the 39 residue mature inhibitor region and a 7 residue C-terminal extension. The 7 residue C-terminal extension is involved in inhibitor inactivation and may be required for targeting to the vacuole where the mature active inhibitor accumulates []. The N-terminal region and the mature inhibitor are weakly related to other solananaceous proteins found in this entry, from potato, tomato and henbane, which have been incorrectly described as metallocarboxipeptidase inhibitors [].; GO: 0008191 metalloendopeptidase inhibitor activity; PDB: 4CPA_I 1H20_A 2HLG_A.
Probab=26.86 E-value=18 Score=27.41 Aligned_cols=17 Identities=41% Similarity=0.946 Sum_probs=8.2
Q ss_pred ccccc----C-CceehHHHHhh
Q 018850 288 FLPCL----C-GFRLCLFCHKR 304 (349)
Q Consensus 288 F~PC~----C-GyqiC~fC~~r 304 (349)
++||. | |..+|+|||+-
T Consensus 9 n~~C~t~sDC~g~tlC~~C~k~ 30 (46)
T PF02977_consen 9 NKYCNTNSDCSGITLCQWCWKL 30 (46)
T ss_dssp T-B-SSSCCCTTSSSS-EE-CC
T ss_pred CCccccCccccceeehHHHHhc
Confidence 45565 5 67777777653
No 135
>PF11596 DUF3246: Protein of unknown function (DUF3246); InterPro: IPR021642 This is a small family of fungal proteins one of whose members, A3LUS4 from SWISSPROT from Pichia stipitis is described as being an extremely serine rich protein-mucin-like protein.
Probab=26.41 E-value=35 Score=33.33 Aligned_cols=13 Identities=38% Similarity=0.330 Sum_probs=5.0
Q ss_pred CCCCCCcccCCCC
Q 018850 122 SSSSSSSVSGSSG 134 (349)
Q Consensus 122 ~s~~sss~SssSs 134 (349)
||+||++.+||+|
T Consensus 226 sGsGssgs~~SgS 238 (241)
T PF11596_consen 226 SGSGSSGSGSSGS 238 (241)
T ss_pred ccccCCCCCCCcC
Confidence 3343333333333
No 136
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=26.23 E-value=35 Score=31.67 Aligned_cols=14 Identities=21% Similarity=0.783 Sum_probs=11.3
Q ss_pred CCCCCCCcccCCCC
Q 018850 270 APSSCPICYEDLDY 283 (349)
Q Consensus 270 ~~~~CPIC~E~LDl 283 (349)
...+||+|-..|.-
T Consensus 4 k~~~CPvC~~~F~~ 17 (214)
T PF09986_consen 4 KKITCPVCGKEFKT 17 (214)
T ss_pred CceECCCCCCeeee
Confidence 46789999999865
No 137
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=25.89 E-value=32 Score=36.87 Aligned_cols=33 Identities=27% Similarity=0.616 Sum_probs=25.2
Q ss_pred CCCCCCCcccCCCCCCCccccccCCceehHHHHhhhh
Q 018850 270 APSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRIL 306 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~ 306 (349)
.+..||+|..-|-. . --.+|+|.+|+.|..+|+
T Consensus 3 eelkc~vc~~f~~e-p---iil~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 3 EELKCPVCGSFYRE-P---IILPCSHNLCQACARNIL 35 (699)
T ss_pred ccccCceehhhccC-c---eEeecccHHHHHHHHhhc
Confidence 36789999865542 1 236899999999998885
No 138
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=25.20 E-value=24 Score=36.86 Aligned_cols=58 Identities=17% Similarity=0.346 Sum_probs=38.6
Q ss_pred CCCCCCcccCCCCCCCccccccCC--ceehHHHHhhhhh--hc------------------CCCCCCccccccCccceee
Q 018850 271 PSSCPICYEDLDYTDSSFLPCLCG--FRLCLFCHKRILE--ED------------------GRCPGCRKPYEHDQVESEA 328 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~CG--yqiC~fC~~rI~e--~d------------------grCPaCRr~Yde~~~~~~~ 328 (349)
--+||-|++++.-......=..|. .-.|-.|.+.|.- .+ ..|+.||=-+.+-.|.|..
T Consensus 26 ~~yCp~CL~~~p~~e~~~~~nrC~r~Cf~CP~C~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~C~~C~Wss~~igi~Fdk 105 (483)
T PF05502_consen 26 SYYCPNCLFEVPSSEARSEKNRCSRNCFDCPICFSPLSVRASDTPPSPPDPSSDSGGKPYYLSCSYCRWSSRDIGIKFDK 105 (483)
T ss_pred eeECccccccCChhhheeccceeccccccCCCCCCcceeEecccccccccccccCCCCCEEEECCCceeeccccCccccC
Confidence 457899988888777666666664 2337778777731 11 2599999877776666543
No 139
>KOG4080 consensus Mitochondrial ribosomal protein L32 [Translation, ribosomal structure and biogenesis]
Probab=24.83 E-value=46 Score=31.24 Aligned_cols=25 Identities=28% Similarity=0.824 Sum_probs=19.2
Q ss_pred CCCCCCcccCCCCCCCccccccCCceehHHHHhhhh
Q 018850 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRIL 306 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~ 306 (349)
..+||.|- +|++ -+.||-+||.+|.
T Consensus 93 l~~CP~CG--------h~k~---a~~LC~~Cy~kV~ 117 (176)
T KOG4080|consen 93 LNTCPACG--------HIKP---AHTLCDYCYAKVH 117 (176)
T ss_pred cccCcccC--------cccc---ccccHHHHHHHHH
Confidence 56899987 3444 4789999999995
No 140
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=24.72 E-value=35 Score=28.91 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=13.0
Q ss_pred CCCCCCCcccCCCCCCCcccccc
Q 018850 270 APSSCPICYEDLDYTDSSFLPCL 292 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD~~F~PC~ 292 (349)
....|+-|-..+...+..+++||
T Consensus 69 ~~~~C~~Cg~~~~~~~~~~~~CP 91 (114)
T PRK03681 69 AECWCETCQQYVTLLTQRVRRCP 91 (114)
T ss_pred cEEEcccCCCeeecCCccCCcCc
Confidence 35567777766665554444444
No 141
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=23.97 E-value=32 Score=36.24 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=10.1
Q ss_pred CCCCCCccccccC
Q 018850 310 GRCPGCRKPYEHD 322 (349)
Q Consensus 310 grCPaCRr~Yde~ 322 (349)
-.||.|...+++.
T Consensus 230 y~C~~Cg~~i~e~ 242 (557)
T PF05876_consen 230 YVCPHCGCEIEEH 242 (557)
T ss_pred EECCCCcCCCCHH
Confidence 3699999888764
No 142
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.52 E-value=48 Score=34.05 Aligned_cols=47 Identities=30% Similarity=0.771 Sum_probs=30.7
Q ss_pred cCCCCCCCCCCcccCCCCCCCccccccCCceeh-HHHHhhhhhhcCCCCCCccccc
Q 018850 266 NVLAAPSSCPICYEDLDYTDSSFLPCLCGFRLC-LFCHKRILEEDGRCPGCRKPYE 320 (349)
Q Consensus 266 ~~~~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC-~fC~~rI~e~dgrCPaCRr~Yd 320 (349)
-...++..|=+|.++.- ++.--+|||--| --|..+| ..||-||+-..
T Consensus 300 ~~~~~p~lcVVcl~e~~----~~~fvpcGh~ccct~cs~~l----~~CPvCR~rI~ 347 (355)
T KOG1571|consen 300 RELPQPDLCVVCLDEPK----SAVFVPCGHVCCCTLCSKHL----PQCPVCRQRIR 347 (355)
T ss_pred cccCCCCceEEecCCcc----ceeeecCCcEEEchHHHhhC----CCCchhHHHHH
Confidence 45667889999976543 344456788754 3344444 34999998643
No 143
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.50 E-value=61 Score=34.24 Aligned_cols=49 Identities=22% Similarity=0.592 Sum_probs=37.7
Q ss_pred CCCCCCCcccCCCC-CCCccccccCCceehHHHHhhhhh--hcCCCCCCccc
Q 018850 270 APSSCPICYEDLDY-TDSSFLPCLCGFRLCLFCHKRILE--EDGRCPGCRKP 318 (349)
Q Consensus 270 ~~~~CPIC~E~LDl-TD~~F~PC~CGyqiC~fC~~rI~e--~dgrCPaCRr~ 318 (349)
...+||||...+.. -|....-..|||-+=--|..+-+. ...+||.|-.+
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence 35689999998854 477888899999988888766653 35689999543
No 144
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=22.49 E-value=58 Score=33.25 Aligned_cols=31 Identities=29% Similarity=0.760 Sum_probs=23.9
Q ss_pred ccccCCceehHHHHhhhhh-----------h--cCCCCCCcccc
Q 018850 289 LPCLCGFRLCLFCHKRILE-----------E--DGRCPGCRKPY 319 (349)
Q Consensus 289 ~PC~CGyqiC~fC~~rI~e-----------~--dgrCPaCRr~Y 319 (349)
.+|-|.---|+-|..++-. . ...||.||.++
T Consensus 307 ~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 307 QQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred ccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 3688888889999999842 1 14599999986
No 145
>PHA00370 III attachment protein
Probab=22.47 E-value=2.3e+02 Score=28.58 Aligned_cols=41 Identities=41% Similarity=0.601 Sum_probs=23.9
Q ss_pred cccCCCCCccccCCcchhccccCccccHHHHH----HHhhccCcCC
Q 018850 128 SVSGSSGGGCCSGSITEEEEEDGCLDDWEAVA----DALAADDDNN 169 (349)
Q Consensus 128 s~SssSs~~~cSgsitEee~dDgclDDWEAvA----DAL~add~~~ 169 (349)
|.-++|++|+.-+++|-+..--+..| .++|| |||..+.+++
T Consensus 122 s~GGGS~gg~~~~~~~~~g~gs~d~d-~~kma~a~kdaltE~~d~~ 166 (297)
T PHA00370 122 SDGGGSEGGSTGKSLTKEGVGAGDFD-YPKMANANKDALTEDNDQN 166 (297)
T ss_pred CCCCCCCCCCCCCccCCCCccccccc-cHHHhhhhhhhhccccccc
Confidence 33445556666677777655444455 78887 5555554444
No 146
>PRK04023 DNA polymerase II large subunit; Validated
Probab=21.34 E-value=76 Score=36.86 Aligned_cols=48 Identities=25% Similarity=0.623 Sum_probs=32.9
Q ss_pred CCCCCCCCCCcccCCCCCCCcccccc-CCc-----eehHHHHhhhhhhcCCCCCCcccccc
Q 018850 267 VLAAPSSCPICYEDLDYTDSSFLPCL-CGF-----RLCLFCHKRILEEDGRCPGCRKPYEH 321 (349)
Q Consensus 267 ~~~~~~~CPIC~E~LDlTD~~F~PC~-CGy-----qiC~fC~~rI~e~dgrCPaCRr~Yde 321 (349)
+-.....||-|=... .++.|+ ||. ..|.-|-... ....||.|-.....
T Consensus 622 VEVg~RfCpsCG~~t-----~~frCP~CG~~Te~i~fCP~CG~~~--~~y~CPKCG~El~~ 675 (1121)
T PRK04023 622 VEIGRRKCPSCGKET-----FYRRCPFCGTHTEPVYRCPRCGIEV--EEDECEKCGREPTP 675 (1121)
T ss_pred ecccCccCCCCCCcC-----CcccCCCCCCCCCcceeCccccCcC--CCCcCCCCCCCCCc
Confidence 334567999999884 567899 984 4788883322 23569999776554
No 147
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=21.17 E-value=34 Score=38.42 Aligned_cols=35 Identities=29% Similarity=0.738 Sum_probs=27.0
Q ss_pred CCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCcccccc
Q 018850 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEH 321 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde 321 (349)
...||-|..-|+..|-.+. |+. .|-||+||.-|++
T Consensus 1044 it~Cp~C~~~F~~eDFEl~-----------vLq-----KGHCPFCrTS~dd 1078 (1081)
T KOG1538|consen 1044 ITMCPSCFQMFHSEDFELL-----------VLQ-----KGHCPFCRTSKDD 1078 (1081)
T ss_pred hhhCchHHhhhccchhhHH-----------HHh-----cCCCCcccccccC
Confidence 4689999999998886521 222 6899999999984
No 148
>PF04360 Serglycin: Serglycin ; InterPro: IPR007455 Serglycin is the most prevalent proteoglycan produced in haemopoietic cells. Serglycin is a proteinase resistant secretory granule proteoglycan [].
Probab=21.10 E-value=52 Score=30.19 Aligned_cols=11 Identities=55% Similarity=0.601 Sum_probs=7.9
Q ss_pred ccCCcchhccc
Q 018850 138 CSGSITEEEEE 148 (349)
Q Consensus 138 cSgsitEee~d 148 (349)
=||..||-|.|
T Consensus 107 GSg~l~e~e~e 117 (150)
T PF04360_consen 107 GSGFLTEMEQE 117 (150)
T ss_pred CCCccccceee
Confidence 36778888765
No 149
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=20.70 E-value=81 Score=23.62 Aligned_cols=27 Identities=26% Similarity=0.738 Sum_probs=15.5
Q ss_pred CCCCCCCcccCCCC-CCCcccccc-CCce
Q 018850 270 APSSCPICYEDLDY-TDSSFLPCL-CGFR 296 (349)
Q Consensus 270 ~~~~CPIC~E~LDl-TD~~F~PC~-CGyq 296 (349)
...+||.|-..... .....+-|+ ||+.
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~ 55 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFTCPNCGFE 55 (69)
T ss_pred CccCccCcccccccccccceEEcCCCCCE
Confidence 35678888777655 222233455 6665
No 150
>PF14471 DUF4428: Domain of unknown function (DUF4428)
Probab=20.09 E-value=87 Score=23.43 Aligned_cols=30 Identities=23% Similarity=0.653 Sum_probs=21.9
Q ss_pred CCCCcccCCCCCCCccccccCCceehHHHHhhh
Q 018850 273 SCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRI 305 (349)
Q Consensus 273 ~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI 305 (349)
.|+||-+++-+.-. +.-.=|| ||--|+.+|
T Consensus 1 ~C~iCg~kigl~~~--~k~~DG~-iC~~C~~Kl 30 (51)
T PF14471_consen 1 KCAICGKKIGLFKR--FKIKDGY-ICKDCLKKL 30 (51)
T ss_pred CCCccccccccccc--eeccCcc-chHHHHHHh
Confidence 48999988876332 3344576 899999988
Done!