Query 018850
Match_columns 349
No_of_seqs 110 out of 150
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 07:01:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018850.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018850hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1e4u_A Transcriptional repress 99.6 1.6E-15 5.5E-20 117.2 5.2 60 269-328 9-69 (78)
2 2ct2_A Tripartite motif protei 98.8 2.9E-09 1E-13 79.7 5.4 58 268-325 12-72 (88)
3 2ecm_A Ring finger and CHY zin 98.7 1.9E-08 6.3E-13 69.7 4.9 51 270-320 4-54 (55)
4 2ect_A Ring finger protein 126 98.6 4E-08 1.4E-12 72.8 5.0 58 268-326 12-69 (78)
5 2xeu_A Ring finger protein 4; 98.6 2E-08 6.8E-13 70.9 3.0 55 270-324 2-59 (64)
6 2ea6_A Ring finger protein 4; 98.6 2.8E-08 9.5E-13 71.1 3.5 55 267-321 11-68 (69)
7 1v87_A Deltex protein 2; ring- 98.5 3.9E-08 1.3E-12 77.6 3.5 67 270-340 24-109 (114)
8 3ng2_A RNF4, snurf, ring finge 98.5 3.2E-08 1.1E-12 71.6 2.7 56 269-324 8-66 (71)
9 1g25_A CDK-activating kinase a 98.5 4.3E-08 1.5E-12 70.7 3.2 55 271-325 3-59 (65)
10 1iym_A EL5; ring-H2 finger, ub 98.5 1.1E-07 3.7E-12 66.0 5.0 52 269-320 3-54 (55)
11 2ysl_A Tripartite motif-contai 98.5 9.8E-08 3.3E-12 69.5 4.6 53 268-324 17-72 (73)
12 2ecv_A Tripartite motif-contai 98.5 2.4E-07 8.2E-12 68.3 6.7 53 268-324 16-74 (85)
13 2ecw_A Tripartite motif-contai 98.5 2.2E-07 7.7E-12 68.4 6.2 53 268-324 16-74 (85)
14 1x4j_A Ring finger protein 38; 98.5 8.3E-08 2.8E-12 71.0 3.5 52 270-322 22-73 (75)
15 2ep4_A Ring finger protein 24; 98.5 1.3E-07 4.5E-12 69.4 4.5 53 268-321 12-64 (74)
16 2kiz_A E3 ubiquitin-protein li 98.5 2.1E-07 7.2E-12 67.4 5.4 53 269-322 12-64 (69)
17 2djb_A Polycomb group ring fin 98.4 3.6E-07 1.2E-11 67.2 5.6 54 268-324 12-65 (72)
18 2ecn_A Ring finger protein 141 98.4 1E-07 3.6E-12 69.2 2.6 54 268-326 12-65 (70)
19 2d8t_A Dactylidin, ring finger 98.4 1.5E-07 5.2E-12 69.1 2.9 52 269-324 13-64 (71)
20 2ecy_A TNF receptor-associated 98.3 5.5E-07 1.9E-11 65.0 4.8 53 268-324 12-65 (66)
21 2egp_A Tripartite motif-contai 98.3 2.8E-07 9.7E-12 67.8 2.8 52 268-323 9-67 (79)
22 1chc_A Equine herpes virus-1 r 98.3 6.4E-07 2.2E-11 64.5 4.3 50 269-321 3-52 (68)
23 2l0b_A E3 ubiquitin-protein li 98.2 4.6E-07 1.6E-11 70.0 3.1 51 270-321 39-89 (91)
24 2csy_A Zinc finger protein 183 98.2 1.3E-06 4.5E-11 65.3 5.5 49 268-320 12-60 (81)
25 3ztg_A E3 ubiquitin-protein li 98.2 1E-06 3.5E-11 67.0 4.5 48 268-319 10-60 (92)
26 4ayc_A E3 ubiquitin-protein li 98.2 5.7E-07 2E-11 74.1 3.2 49 271-323 53-101 (138)
27 2ecl_A Ring-box protein 2; RNF 98.2 1.1E-06 3.9E-11 66.8 4.4 54 270-323 14-78 (81)
28 1jm7_B BARD1, BRCA1-associated 98.2 4.9E-07 1.7E-11 72.5 2.1 63 256-323 3-69 (117)
29 4ap4_A E3 ubiquitin ligase RNF 98.2 5.9E-07 2E-11 70.8 2.4 58 269-326 5-65 (133)
30 2y43_A E3 ubiquitin-protein li 98.2 1.3E-06 4.4E-11 67.7 4.1 50 270-322 21-70 (99)
31 2vje_A E3 ubiquitin-protein li 98.1 7.2E-07 2.5E-11 65.6 2.3 49 271-321 8-57 (64)
32 1jm7_A BRCA1, breast cancer ty 98.1 2.1E-06 7.3E-11 66.9 4.6 50 271-324 21-73 (112)
33 1t1h_A Gspef-atpub14, armadill 98.1 2.6E-06 8.9E-11 63.0 4.5 52 268-323 5-57 (78)
34 3fl2_A E3 ubiquitin-protein li 98.1 2.1E-06 7.2E-11 69.1 4.0 47 271-321 52-99 (124)
35 2yur_A Retinoblastoma-binding 98.1 2.3E-06 8E-11 63.5 3.8 49 269-321 13-64 (74)
36 2vje_B MDM4 protein; proto-onc 98.1 1.2E-06 4E-11 64.3 2.1 50 270-321 6-56 (63)
37 3lrq_A E3 ubiquitin-protein li 98.1 2.6E-06 9E-11 66.8 4.0 54 268-324 19-73 (100)
38 2ckl_A Polycomb group ring fin 98.0 3E-06 1E-10 66.7 3.8 50 270-322 14-63 (108)
39 3hct_A TNF receptor-associated 98.0 3.4E-06 1.2E-10 67.7 4.1 53 267-323 14-67 (118)
40 2ckl_B Ubiquitin ligase protei 98.0 3.1E-06 1.1E-10 71.1 3.6 48 271-321 54-102 (165)
41 3l11_A E3 ubiquitin-protein li 98.0 2.5E-06 8.6E-11 67.6 2.4 47 271-321 15-62 (115)
42 2ecg_A Baculoviral IAP repeat- 97.9 8E-06 2.7E-10 61.0 4.3 44 271-322 25-69 (75)
43 3dpl_R Ring-box protein 1; ubi 97.9 6.9E-06 2.4E-10 66.7 4.1 51 270-320 36-100 (106)
44 1z6u_A NP95-like ring finger p 97.9 6.3E-06 2.2E-10 69.7 3.5 48 271-322 78-126 (150)
45 1rmd_A RAG1; V(D)J recombinati 97.9 6.7E-06 2.3E-10 65.3 3.4 50 271-324 23-73 (116)
46 4ap4_A E3 ubiquitin ligase RNF 97.9 4E-06 1.4E-10 66.0 2.0 55 270-324 71-128 (133)
47 2ysj_A Tripartite motif-contai 97.8 1.4E-05 4.9E-10 56.9 4.4 44 268-315 17-63 (63)
48 2ecj_A Tripartite motif-contai 97.8 1.7E-05 6E-10 55.0 4.4 44 268-315 12-58 (58)
49 3hcs_A TNF receptor-associated 97.8 1.1E-05 3.6E-10 68.0 3.7 53 267-323 14-67 (170)
50 1wim_A KIAA0161 protein; ring 97.8 6E-06 2E-10 63.8 1.5 54 270-324 4-69 (94)
51 2d8s_A Cellular modulator of i 97.8 3.9E-05 1.3E-09 59.5 5.8 53 270-322 14-71 (80)
52 1bor_A Transcription factor PM 97.7 2.2E-05 7.6E-10 55.8 2.9 46 270-322 5-50 (56)
53 4ic3_A E3 ubiquitin-protein li 97.6 2E-05 7E-10 58.9 2.4 45 270-322 23-68 (74)
54 4a0k_B E3 ubiquitin-protein li 97.6 9.5E-06 3.3E-10 67.5 0.1 51 271-321 48-112 (117)
55 1wgm_A Ubiquitin conjugation f 97.5 7.8E-05 2.7E-09 59.3 4.7 51 269-323 20-71 (98)
56 2kr4_A Ubiquitin conjugation f 97.5 7.3E-05 2.5E-09 57.6 4.4 50 269-322 12-61 (85)
57 2ea5_A Cell growth regulator w 97.5 0.0001 3.5E-09 55.0 4.8 45 270-322 14-59 (68)
58 2c2l_A CHIP, carboxy terminus 97.5 6.8E-05 2.3E-09 65.6 4.3 50 270-323 207-257 (281)
59 2kre_A Ubiquitin conjugation f 97.5 9.2E-05 3.2E-09 59.1 4.2 51 269-323 27-77 (100)
60 3knv_A TNF receptor-associated 97.5 2.1E-05 7.1E-10 66.1 0.4 48 268-319 28-76 (141)
61 2y1n_A E3 ubiquitin-protein li 97.3 0.0001 3.5E-09 72.4 3.6 49 271-323 332-381 (389)
62 2yho_A E3 ubiquitin-protein li 97.3 0.00011 3.7E-09 56.2 2.3 45 271-323 18-63 (79)
63 3t6p_A Baculoviral IAP repeat- 97.1 0.00016 5.4E-09 69.4 1.9 46 269-322 293-339 (345)
64 2f42_A STIP1 homology and U-bo 96.9 0.00066 2.3E-08 60.2 3.9 48 271-322 106-154 (179)
65 2yu4_A E3 SUMO-protein ligase 96.8 0.001 3.4E-08 51.8 3.8 48 270-321 6-63 (94)
66 2bay_A PRE-mRNA splicing facto 95.9 0.0056 1.9E-07 45.0 3.2 50 271-324 3-53 (61)
67 3htk_C E3 SUMO-protein ligase 95.6 0.0061 2.1E-07 57.6 3.0 53 269-324 179-235 (267)
68 1weo_A Cellulose synthase, cat 95.5 0.015 5.1E-07 47.7 4.7 51 271-321 16-70 (93)
69 2ct0_A Non-SMC element 1 homol 94.6 0.048 1.6E-06 42.1 5.1 52 270-325 14-68 (74)
70 1vyx_A ORF K3, K3RING; zinc-bi 94.1 0.037 1.3E-06 40.6 3.3 47 271-320 6-58 (60)
71 3k1l_B Fancl; UBC, ring, RWD, 92.0 0.071 2.4E-06 52.7 2.8 52 270-321 307-373 (381)
72 3vk6_A E3 ubiquitin-protein li 89.2 0.25 8.5E-06 41.0 3.2 46 273-321 3-49 (101)
73 3nw0_A Non-structural maintena 85.0 0.81 2.8E-05 41.7 4.4 50 270-323 179-231 (238)
74 2cs3_A Protein C14ORF4, MY039 80.6 3 0.0001 34.0 5.6 45 268-314 12-63 (93)
75 2cqq_A RSGI RUH-037, DNAJ homo 73.1 2 6.8E-05 32.9 2.5 25 139-163 8-42 (72)
76 2jne_A Hypothetical protein YF 68.1 0.54 1.8E-05 39.1 -1.8 42 271-321 32-73 (101)
77 3vth_A Hydrogenase maturation 66.4 2.1 7.2E-05 45.2 1.8 28 267-294 107-140 (761)
78 2jrp_A Putative cytoplasmic pr 65.3 1.3 4.6E-05 35.2 0.1 41 272-321 3-43 (81)
79 1twf_L ABC10-alpha, DNA-direct 59.5 3.5 0.00012 31.8 1.4 35 247-284 7-41 (70)
80 2zet_C Melanophilin; complex, 57.9 4 0.00014 35.3 1.7 48 271-318 68-117 (153)
81 2jun_A Midline-1; B-BOX, TRIM, 56.4 8.3 0.00028 29.3 3.1 35 270-305 2-36 (101)
82 2xjy_A Rhombotin-2; oncoprotei 54.7 10 0.00034 30.0 3.5 51 270-321 28-78 (131)
83 2yus_A SWI/SNF-related matrix- 52.9 13 0.00046 28.5 3.8 24 138-163 17-48 (79)
84 4g9i_A Hydrogenase maturation 52.4 5.1 0.00018 42.2 1.8 28 269-296 104-137 (772)
85 1m3v_A FLIN4, fusion of the LI 48.9 11 0.00036 30.0 2.7 52 272-324 33-84 (122)
86 2ko5_A Ring finger protein Z; 46.6 5.9 0.0002 32.8 0.9 46 271-321 28-73 (99)
87 1zbd_B Rabphilin-3A; G protein 44.5 9.8 0.00033 32.1 2.0 47 271-317 55-106 (134)
88 3ttc_A HYPF, transcriptional r 40.1 1.8 6.3E-05 45.0 -3.8 22 267-288 13-35 (657)
89 2cu7_A KIAA1915 protein; nucle 39.8 19 0.00064 26.6 2.7 27 135-163 5-39 (72)
90 1x41_A Transcriptional adaptor 39.7 17 0.00058 26.0 2.4 28 136-163 5-39 (60)
91 2cjj_A Radialis; plant develop 39.4 12 0.0004 30.0 1.6 26 138-163 7-42 (93)
92 2akl_A PHNA-like protein PA012 37.1 15 0.0005 32.1 1.9 28 269-296 25-53 (138)
93 1i7w_B E-cadherin, epithelial- 37.0 12 0.0004 32.6 1.4 25 132-156 111-135 (151)
94 3mjh_B Early endosome antigen 35.4 5.8 0.0002 26.9 -0.7 12 271-282 5-16 (34)
95 2l7x_A Envelope glycoprotein; 35.2 5.3 0.00018 31.7 -1.0 44 271-314 5-54 (77)
96 1q55_A EP-cadherin, C-cadherin 34.4 8.4 0.00029 40.7 0.0 27 131-157 838-864 (880)
97 2j9u_B VPS36, vacuolar protein 32.8 21 0.00071 28.3 2.0 10 269-278 15-24 (76)
98 1wgx_A KIAA1903 protein; MYB D 32.6 26 0.00087 27.2 2.5 23 141-163 10-42 (73)
99 2jr6_A UPF0434 protein NMA0874 32.5 7.5 0.00026 29.6 -0.5 31 270-320 7-37 (68)
100 2csz_A Synaptotagmin-like prot 31.8 22 0.00075 28.0 2.0 32 270-301 24-56 (76)
101 2hf1_A Tetraacyldisaccharide-1 31.2 7.9 0.00027 29.5 -0.6 30 271-320 8-37 (68)
102 1yop_A KTI11P; zinc finger, me 31.0 13 0.00044 29.5 0.6 31 286-317 21-53 (83)
103 2cup_A Skeletal muscle LIM-pro 30.7 40 0.0014 25.2 3.3 46 271-321 33-78 (101)
104 2xqn_T Testin, TESS; metal-bin 30.5 41 0.0014 26.2 3.4 46 271-321 30-75 (126)
105 4ayb_P DNA-directed RNA polyme 30.3 30 0.001 25.4 2.4 18 273-290 5-22 (48)
106 2gmg_A Hypothetical protein PF 30.3 19 0.00065 29.9 1.5 26 293-323 73-98 (105)
107 2jr7_A DPH3 homolog; DESR1, CS 29.7 12 0.00042 30.1 0.3 32 285-317 20-53 (89)
108 2pk7_A Uncharacterized protein 29.4 11 0.00036 28.9 -0.2 30 271-320 8-37 (69)
109 2jny_A Uncharacterized BCR; st 26.9 10 0.00036 28.8 -0.6 31 270-320 9-39 (67)
110 2js4_A UPF0434 protein BB2007; 26.5 8.7 0.0003 29.4 -1.1 31 270-320 7-37 (70)
111 1x4u_A Zinc finger, FYVE domai 26.3 64 0.0022 24.5 3.7 43 259-304 5-47 (84)
112 2yum_A ZZZ3 protein, zinc fing 25.5 36 0.0012 25.1 2.1 28 136-163 5-44 (75)
113 1wd2_A Ariadne-1 protein homol 25.1 43 0.0015 24.5 2.4 38 270-307 5-46 (60)
114 2ct7_A Ring finger protein 31; 24.8 21 0.00072 27.3 0.8 29 273-301 27-57 (86)
115 2dim_A Cell division cycle 5-l 23.8 27 0.00091 25.5 1.1 29 134-163 4-40 (70)
116 4eef_G F-HB80.4, designed hema 23.7 11 0.00037 29.8 -1.1 22 142-163 23-54 (74)
117 2b3g_B Cellular tumor antigen 21.2 26 0.00089 23.0 0.5 7 43-49 19-25 (28)
No 1
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.57 E-value=1.6e-15 Score=117.18 Aligned_cols=60 Identities=45% Similarity=1.151 Sum_probs=54.3
Q ss_pred CCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhh-hcCCCCCCccccccCccceee
Q 018850 269 AAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILE-EDGRCPGCRKPYEHDQVESEA 328 (349)
Q Consensus 269 ~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e-~dgrCPaCRr~Yde~~~~~~~ 328 (349)
..+.+||||+|+++++|..|+||+|||++|++|++++.+ ..++||.||++|....+.+..
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~~ 69 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYKP 69 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCCCS
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhhcc
Confidence 356799999999999999999999999999999999975 568999999999998887665
No 2
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=2.9e-09 Score=79.73 Aligned_cols=58 Identities=28% Similarity=0.564 Sum_probs=48.5
Q ss_pred CCCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhc---CCCCCCccccccCccc
Q 018850 268 LAAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEED---GRCPGCRKPYEHDQVE 325 (349)
Q Consensus 268 ~~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~d---grCPaCRr~Yde~~~~ 325 (349)
+....+||||++.|...+....-.+|||.+|..|+.+++... ..||.||+++....+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~ 72 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLT 72 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTT
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHH
Confidence 345789999999999887656667899999999999998743 7999999999876553
No 3
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.68 E-value=1.9e-08 Score=69.72 Aligned_cols=51 Identities=35% Similarity=0.686 Sum_probs=44.5
Q ss_pred CCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCccccc
Q 018850 270 APSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYE 320 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yd 320 (349)
...+||||++.|...+......+|||.+|..|+.+.+.....||.||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 467999999999877767777889999999999999877799999999874
No 4
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.60 E-value=4e-08 Score=72.77 Aligned_cols=58 Identities=26% Similarity=0.532 Sum_probs=46.8
Q ss_pred CCCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCccccccCccce
Q 018850 268 LAAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHDQVES 326 (349)
Q Consensus 268 ~~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde~~~~~ 326 (349)
.....+||||++.|...+. +...+|||.+|..|+.+.+.....||.||+++....+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~-~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGES-VRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSC-EEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCC
T ss_pred CCCCCCCeeCCccccCCCC-EEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCC
Confidence 3457899999999986553 334579999999999998877789999999998766543
No 5
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.59 E-value=2e-08 Score=70.92 Aligned_cols=55 Identities=31% Similarity=0.716 Sum_probs=45.7
Q ss_pred CCCCCCCcccCCCCC---CCccccccCCceehHHHHhhhhhhcCCCCCCccccccCcc
Q 018850 270 APSSCPICYEDLDYT---DSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHDQV 324 (349)
Q Consensus 270 ~~~~CPIC~E~LDlT---D~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde~~~ 324 (349)
...+||||++.|... +..+...+|||.+|..|+.+.+.....||.||+++....+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 59 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 59 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccce
Confidence 367899999998652 3445667999999999999998878899999999987654
No 6
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=2.8e-08 Score=71.12 Aligned_cols=55 Identities=29% Similarity=0.695 Sum_probs=44.9
Q ss_pred CCCCCCCCCCcccCCCCC---CCccccccCCceehHHHHhhhhhhcCCCCCCcccccc
Q 018850 267 VLAAPSSCPICYEDLDYT---DSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEH 321 (349)
Q Consensus 267 ~~~~~~~CPIC~E~LDlT---D~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde 321 (349)
......+||||++.|... ...+...+|||.+|.-|+.+.+.....||.||+++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 344678999999998653 3444667899999999999998778899999998864
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.54 E-value=3.9e-08 Score=77.61 Aligned_cols=67 Identities=21% Similarity=0.377 Sum_probs=48.7
Q ss_pred CCCCCCCcccCCCCCC--------------CccccccCCceehHHHHhhhhh-----hcCCCCCCccccccCccceeeee
Q 018850 270 APSSCPICYEDLDYTD--------------SSFLPCLCGFRLCLFCHKRILE-----EDGRCPGCRKPYEHDQVESEAIV 330 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD--------------~~F~PC~CGyqiC~fC~~rI~e-----~dgrCPaCRr~Yde~~~~~~~~~ 330 (349)
...+||||+++|...+ ......+|||.+|.-|+...+. ....||.||+.|....- .+
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g----~q 99 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTG----TQ 99 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSS----SC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCC----CC
Confidence 3578999999996533 1223578999999999998874 34689999999986532 23
Q ss_pred ecccceeecc
Q 018850 331 QGGSMTFRLA 340 (349)
Q Consensus 331 ~~~~~~~rls 340 (349)
..|.|+..|.
T Consensus 100 p~g~m~~~~~ 109 (114)
T 1v87_A 100 PWGKMEVFRS 109 (114)
T ss_dssp TTSSCCCSSC
T ss_pred CCCeEEEEEe
Confidence 4566776554
No 8
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.53 E-value=3.2e-08 Score=71.58 Aligned_cols=56 Identities=29% Similarity=0.714 Sum_probs=45.7
Q ss_pred CCCCCCCCcccCCCCC---CCccccccCCceehHHHHhhhhhhcCCCCCCccccccCcc
Q 018850 269 AAPSSCPICYEDLDYT---DSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHDQV 324 (349)
Q Consensus 269 ~~~~~CPIC~E~LDlT---D~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde~~~ 324 (349)
....+||||++.|... +....-.+|||.+|..|+.+.+.....||.||+++....+
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 3578999999998653 3444667899999999999998777899999999986654
No 9
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.52 E-value=4.3e-08 Score=70.69 Aligned_cols=55 Identities=24% Similarity=0.665 Sum_probs=44.4
Q ss_pred CCCCCCccc-CCCCCCCccccccCCceehHHHHhhhhh-hcCCCCCCccccccCccc
Q 018850 271 PSSCPICYE-DLDYTDSSFLPCLCGFRLCLFCHKRILE-EDGRCPGCRKPYEHDQVE 325 (349)
Q Consensus 271 ~~~CPIC~E-~LDlTD~~F~PC~CGyqiC~fC~~rI~e-~dgrCPaCRr~Yde~~~~ 325 (349)
+.+||||.+ .|......+...+|||.+|..|+.++.. ....||.||+++....+.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 59 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFR 59 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCE
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccce
Confidence 578999999 6765555555679999999999999964 457899999999876653
No 10
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.52 E-value=1.1e-07 Score=66.03 Aligned_cols=52 Identities=21% Similarity=0.469 Sum_probs=42.5
Q ss_pred CCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCccccc
Q 018850 269 AAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYE 320 (349)
Q Consensus 269 ~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yd 320 (349)
....+||||+++|...+.....-.|||.+|.-|+.+.+.....||.||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3467999999999877655433359999999999988877889999999763
No 11
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=9.8e-08 Score=69.51 Aligned_cols=53 Identities=30% Similarity=0.642 Sum_probs=41.7
Q ss_pred CCCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhh---hcCCCCCCccccccCcc
Q 018850 268 LAAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILE---EDGRCPGCRKPYEHDQV 324 (349)
Q Consensus 268 ~~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e---~dgrCPaCRr~Yde~~~ 324 (349)
+.....||||++.|.. -.+ .+|||.+|..|+.+++. ....||.||+++....+
T Consensus 17 ~~~~~~C~IC~~~~~~--~~~--~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 17 LQEEVICPICLDILQK--PVT--IDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCBCTTTCSBCSS--EEE--CTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred CccCCEeccCCcccCC--eEE--cCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 3457899999998873 222 38999999999999975 34689999999976554
No 12
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=2.4e-07 Score=68.25 Aligned_cols=53 Identities=30% Similarity=0.751 Sum_probs=41.9
Q ss_pred CCCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhh------cCCCCCCccccccCcc
Q 018850 268 LAAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEE------DGRCPGCRKPYEHDQV 324 (349)
Q Consensus 268 ~~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~------dgrCPaCRr~Yde~~~ 324 (349)
+....+||||++.|.. - .-.+|||.+|..|+..++.. ...||.||+++....+
T Consensus 16 ~~~~~~C~IC~~~~~~--p--~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQ--P--LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENI 74 (85)
T ss_dssp CCCCCCCTTTCSCCSS--C--BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSC
T ss_pred ccCCCCCCCCCcccCC--c--eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhc
Confidence 4457899999999853 2 22479999999999988754 6799999999986543
No 13
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.48 E-value=2.2e-07 Score=68.41 Aligned_cols=53 Identities=32% Similarity=0.744 Sum_probs=41.9
Q ss_pred CCCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhh------cCCCCCCccccccCcc
Q 018850 268 LAAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEE------DGRCPGCRKPYEHDQV 324 (349)
Q Consensus 268 ~~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~------dgrCPaCRr~Yde~~~ 324 (349)
+....+||||++.|... . ..+|||.+|..|+.+.... ...||.||+++....+
T Consensus 16 ~~~~~~C~IC~~~~~~p--~--~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEP--V--SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNL 74 (85)
T ss_dssp CCTTTSCTTTCSCCSSC--E--ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCC
T ss_pred CccCCCCcCCChhhCcc--e--eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhC
Confidence 34578999999998532 2 3579999999999988764 5689999999986543
No 14
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.47 E-value=8.3e-08 Score=70.97 Aligned_cols=52 Identities=19% Similarity=0.466 Sum_probs=43.4
Q ss_pred CCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCccccccC
Q 018850 270 APSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHD 322 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde~ 322 (349)
...+||||++.|...+ .+...+|||.+|..|+.+.+.....||.||+++...
T Consensus 22 ~~~~C~IC~~~~~~~~-~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQ-LLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SCCEETTTTEECCBTC-EEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCCCeECCcccCCCC-eEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 4678999999998765 334457999999999999987778999999998753
No 15
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=1.3e-07 Score=69.38 Aligned_cols=53 Identities=28% Similarity=0.529 Sum_probs=43.2
Q ss_pred CCCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCcccccc
Q 018850 268 LAAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEH 321 (349)
Q Consensus 268 ~~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde 321 (349)
+....+||||++.|...+.. .-++|||.+|..|+.+.+.....||.||+++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~-~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDEL-GICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCE-EEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCCCCcCCCcccCCCCcE-EEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 34578999999999765543 345799999999999988777799999999864
No 16
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.46 E-value=2.1e-07 Score=67.43 Aligned_cols=53 Identities=23% Similarity=0.466 Sum_probs=42.9
Q ss_pred CCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCccccccC
Q 018850 269 AAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHD 322 (349)
Q Consensus 269 ~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde~ 322 (349)
....+||||++.|...+. ..-.+|||.+|..|+.+.+.....||.||+++...
T Consensus 12 ~~~~~C~IC~~~~~~~~~-~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGED-VRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSC-EEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCc-EEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 357799999999975443 34457999999999999887778899999988653
No 17
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=3.6e-07 Score=67.22 Aligned_cols=54 Identities=26% Similarity=0.394 Sum_probs=43.3
Q ss_pred CCCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCccccccCcc
Q 018850 268 LAAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHDQV 324 (349)
Q Consensus 268 ~~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde~~~ 324 (349)
+.....||||++.|.. ....-+|||.+|..|+.+.+.....||.||+++.....
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 12 LTPYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQP 65 (72)
T ss_dssp CCGGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCS
T ss_pred cCCCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccc
Confidence 3456799999998864 22334899999999999988778899999999976544
No 18
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=1e-07 Score=69.22 Aligned_cols=54 Identities=24% Similarity=0.509 Sum_probs=44.2
Q ss_pred CCCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCccccccCccce
Q 018850 268 LAAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHDQVES 326 (349)
Q Consensus 268 ~~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde~~~~~ 326 (349)
+....+||||++.+.. ...+|||.+|..|+.+.+.....||.||+++......+
T Consensus 12 ~~~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred CCCCCCCeeCCcCccC-----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence 3457899999999875 44679999999999998777789999999998655443
No 19
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=1.5e-07 Score=69.05 Aligned_cols=52 Identities=23% Similarity=0.452 Sum_probs=41.5
Q ss_pred CCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCccccccCcc
Q 018850 269 AAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHDQV 324 (349)
Q Consensus 269 ~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde~~~ 324 (349)
....+||||++.|.. ..+ .+|||.+|..|+.+.+.....||.||+++....+
T Consensus 13 ~~~~~C~IC~~~~~~--~~~--~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 13 LTVPECAICLQTCVH--PVS--LPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFL 64 (71)
T ss_dssp SSCCBCSSSSSBCSS--EEE--ETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHH
T ss_pred CCCCCCccCCcccCC--CEE--ccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhc
Confidence 357899999999843 232 4699999999999987767899999999876543
No 20
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=5.5e-07 Score=65.02 Aligned_cols=53 Identities=25% Similarity=0.552 Sum_probs=42.1
Q ss_pred CCCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhh-hcCCCCCCccccccCcc
Q 018850 268 LAAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILE-EDGRCPGCRKPYEHDQV 324 (349)
Q Consensus 268 ~~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e-~dgrCPaCRr~Yde~~~ 324 (349)
+....+||||.+.|... .. .+|||.+|..|+.+.+. ....||.||+++..+.+
T Consensus 12 ~~~~~~C~IC~~~~~~p--~~--~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSP--KQ--TECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCCEECTTTCCEESSC--CC--CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred CCcCCCCCCCChHhcCe--eE--CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 34578999999988532 21 58999999999999984 56789999999987654
No 21
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.29 E-value=2.8e-07 Score=67.77 Aligned_cols=52 Identities=31% Similarity=0.664 Sum_probs=40.9
Q ss_pred CCCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhh-------cCCCCCCccccccCc
Q 018850 268 LAAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEE-------DGRCPGCRKPYEHDQ 323 (349)
Q Consensus 268 ~~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~-------dgrCPaCRr~Yde~~ 323 (349)
+....+||||++.|.. -. -.+|||.+|..|+.+.+.. ...||.||+++....
T Consensus 9 ~~~~~~C~IC~~~~~~--p~--~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 9 VQEEVTCPICLELLTE--PL--SLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCCCEETTTTEECSS--CC--CCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred cccCCCCcCCCcccCC--ee--ECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence 3457899999999864 12 2589999999999988653 568999999997643
No 22
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.27 E-value=6.4e-07 Score=64.50 Aligned_cols=50 Identities=30% Similarity=0.733 Sum_probs=40.6
Q ss_pred CCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCcccccc
Q 018850 269 AAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEH 321 (349)
Q Consensus 269 ~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde 321 (349)
....+||||++.+... ....+|||.+|..|+.+.+.....||.||+++..
T Consensus 3 ~~~~~C~IC~~~~~~~---~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNY---SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSC---EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCC---cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 3467999999998631 1345799999999999988777899999999864
No 23
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.24 E-value=4.6e-07 Score=70.02 Aligned_cols=51 Identities=25% Similarity=0.505 Sum_probs=42.3
Q ss_pred CCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCcccccc
Q 018850 270 APSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEH 321 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde 321 (349)
...+||||++.|...+. ..-.+|||.+|..|+...+.....||.||+++..
T Consensus 39 ~~~~C~IC~~~~~~~~~-~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDV-ATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCE-EEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCc-EEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 46789999999987653 3446799999999999988777899999998754
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=1.3e-06 Score=65.34 Aligned_cols=49 Identities=22% Similarity=0.500 Sum_probs=40.7
Q ss_pred CCCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCccccc
Q 018850 268 LAAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYE 320 (349)
Q Consensus 268 ~~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yd 320 (349)
......||||++.|.. - .-.+|||.+|..|+.+.+.....||.||+++.
T Consensus 12 ~~~~~~C~IC~~~~~~--p--~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQN--P--VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCS--E--EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcC--e--eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3457799999999843 2 23689999999999999877789999999986
No 25
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.22 E-value=1e-06 Score=67.05 Aligned_cols=48 Identities=25% Similarity=0.540 Sum_probs=38.0
Q ss_pred CCCCCCCCCcccCCCCCCCcccccc-CCceehHHHHhhhhhh--cCCCCCCcccc
Q 018850 268 LAAPSSCPICYEDLDYTDSSFLPCL-CGFRLCLFCHKRILEE--DGRCPGCRKPY 319 (349)
Q Consensus 268 ~~~~~~CPIC~E~LDlTD~~F~PC~-CGyqiC~fC~~rI~e~--dgrCPaCRr~Y 319 (349)
+....+||||.+.|.. -. -.+ |||.+|..|+...... ...||.||+++
T Consensus 10 ~~~~~~C~IC~~~~~~--p~--~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 10 IPDELLCLICKDIMTD--AV--VIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCTTTEETTTTEECSS--CE--ECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCcCCCCCCCChhhcC--ce--ECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 3457899999999862 22 246 9999999999888753 35899999997
No 26
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.21 E-value=5.7e-07 Score=74.11 Aligned_cols=49 Identities=24% Similarity=0.627 Sum_probs=39.7
Q ss_pred CCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCccccccCc
Q 018850 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHDQ 323 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde~~ 323 (349)
..+||||++.|. |- .-.+|||.+|..|+.+.+.....||.||+++...+
T Consensus 53 ~~~C~iC~~~~~--~~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 53 ELQCIICSEYFI--EA--VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp HSBCTTTCSBCS--SE--EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred cCCCcccCcccC--Cc--eECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 468999999985 22 33579999999999988777788999999986544
No 27
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=1.1e-06 Score=66.81 Aligned_cols=54 Identities=19% Similarity=0.452 Sum_probs=42.7
Q ss_pred CCCCCCCcccCCCC-----------CCCccccccCCceehHHHHhhhhhhcCCCCCCccccccCc
Q 018850 270 APSSCPICYEDLDY-----------TDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHDQ 323 (349)
Q Consensus 270 ~~~~CPIC~E~LDl-----------TD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde~~ 323 (349)
...+|+||+++|+. .+......+|||.++.-|+.+-+.....||-||+++....
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQR 78 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchhh
Confidence 36788999888865 3444455579999999999998877789999999986543
No 28
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.18 E-value=4.9e-07 Score=72.46 Aligned_cols=63 Identities=22% Similarity=0.402 Sum_probs=46.5
Q ss_pred CCCCCccccc----cCCCCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCccccccCc
Q 018850 256 GQGGVPWACN----NVLAAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHDQ 323 (349)
Q Consensus 256 g~~g~~w~~~----~~~~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde~~ 323 (349)
|.++..|+.. ..+....+||||.+.|.. .....+|||.+|..|+.+... ..||.||+++....
T Consensus 3 ~~~~~~~~~~~~~~~~l~~~~~C~IC~~~~~~---pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~ 69 (117)
T 1jm7_B 3 PDGRGAWAHSRAALDRLEKLLRCSRCTNILRE---PVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQD 69 (117)
T ss_dssp SSTTCCCHHHHHHHHHHHHTTSCSSSCSCCSS---CBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSS
T ss_pred CCcccCccchHHHHHhchhCCCCCCCChHhhC---ccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcccc
Confidence 4566778654 233457899999998853 222238999999999988875 78999999986543
No 29
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.17 E-value=5.9e-07 Score=70.83 Aligned_cols=58 Identities=28% Similarity=0.694 Sum_probs=46.9
Q ss_pred CCCCCCCCcccCCCCC---CCccccccCCceehHHHHhhhhhhcCCCCCCccccccCccce
Q 018850 269 AAPSSCPICYEDLDYT---DSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHDQVES 326 (349)
Q Consensus 269 ~~~~~CPIC~E~LDlT---D~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde~~~~~ 326 (349)
....+||||++.|... +......+|||.+|..|+.+.+.....||.||+++....+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~ 65 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 65 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccc
Confidence 3478999999998653 333366799999999999999877789999999998776643
No 30
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.16 E-value=1.3e-06 Score=67.66 Aligned_cols=50 Identities=22% Similarity=0.626 Sum_probs=40.6
Q ss_pred CCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCccccccC
Q 018850 270 APSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHD 322 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde~ 322 (349)
....||||++.|.. .....+|||.+|..|+.+.+.....||.||.++...
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 21 DLLRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEP 70 (99)
T ss_dssp HHTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CCCCcccCChhhCC---cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChh
Confidence 35799999999864 112238999999999999987778999999998764
No 31
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.15 E-value=7.2e-07 Score=65.61 Aligned_cols=49 Identities=24% Similarity=0.631 Sum_probs=41.0
Q ss_pred CCCCCCcccCCCCCCCccccccCCce-ehHHHHhhhhhhcCCCCCCcccccc
Q 018850 271 PSSCPICYEDLDYTDSSFLPCLCGFR-LCLFCHKRILEEDGRCPGCRKPYEH 321 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~CGyq-iC~fC~~rI~e~dgrCPaCRr~Yde 321 (349)
..+|+||++..- |..|...+|||. +|..|..++......||-||+++..
T Consensus 8 ~~~C~IC~~~~~--~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 8 IEPCVICQGRPK--NGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GSCCTTTSSSCS--CEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred cCCCCcCCCCCC--CEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 568999999763 556665689999 8999999998877899999999854
No 32
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.12 E-value=2.1e-06 Score=66.89 Aligned_cols=50 Identities=26% Similarity=0.699 Sum_probs=39.5
Q ss_pred CCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhc---CCCCCCccccccCcc
Q 018850 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEED---GRCPGCRKPYEHDQV 324 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~d---grCPaCRr~Yde~~~ 324 (349)
..+||||++.+.. -.. .+|||.+|..|+.+.+... ..||.||.++....+
T Consensus 21 ~~~C~IC~~~~~~--p~~--~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 73 (112)
T 1jm7_A 21 ILECPICLELIKE--PVS--TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73 (112)
T ss_dssp HTSCSSSCCCCSS--CCB--CTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred CCCCcccChhhcC--eEE--CCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhc
Confidence 5689999998853 222 4799999999999987643 489999999987554
No 33
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.10 E-value=2.6e-06 Score=62.96 Aligned_cols=52 Identities=17% Similarity=0.266 Sum_probs=41.5
Q ss_pred CCCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhh-cCCCCCCccccccCc
Q 018850 268 LAAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEE-DGRCPGCRKPYEHDQ 323 (349)
Q Consensus 268 ~~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~-dgrCPaCRr~Yde~~ 323 (349)
+.....||||.+.|.. - .-.+|||.+|..|+.+.+.. ...||.||+++....
T Consensus 5 ~~~~~~C~IC~~~~~~--P--v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 5 FPEYFRCPISLELMKD--P--VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 57 (78)
T ss_dssp CSSSSSCTTTSCCCSS--E--EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred CcccCCCCCccccccC--C--EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhh
Confidence 3457899999999853 1 22479999999999988875 678999999987653
No 34
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.08 E-value=2.1e-06 Score=69.07 Aligned_cols=47 Identities=23% Similarity=0.479 Sum_probs=38.0
Q ss_pred CCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhh-cCCCCCCcccccc
Q 018850 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEE-DGRCPGCRKPYEH 321 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~-dgrCPaCRr~Yde 321 (349)
..+||||++.|.. -. -.+|||.+|..|+.+.+.. ...||.||+++..
T Consensus 52 ~~~C~IC~~~~~~--p~--~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFR--PI--TTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSS--EE--ECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcC--cE--EeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 5789999999873 12 2489999999999888763 4589999999976
No 35
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.07 E-value=2.3e-06 Score=63.45 Aligned_cols=49 Identities=24% Similarity=0.500 Sum_probs=38.6
Q ss_pred CCCCCCCCcccCCCCCCCcccccc-CCceehHHHHhhhhhhc--CCCCCCcccccc
Q 018850 269 AAPSSCPICYEDLDYTDSSFLPCL-CGFRLCLFCHKRILEED--GRCPGCRKPYEH 321 (349)
Q Consensus 269 ~~~~~CPIC~E~LDlTD~~F~PC~-CGyqiC~fC~~rI~e~d--grCPaCRr~Yde 321 (349)
.....||||++.|.. - .-.+ |||.+|..|+.+.+... ..||.||+++..
T Consensus 13 ~~~~~C~IC~~~~~~--p--~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 13 PDELLCLICKDIMTD--A--VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CGGGSCSSSCCCCTT--C--EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCCcCCChHHhC--C--eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 456799999998863 1 2267 99999999999988644 589999998643
No 36
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.07 E-value=1.2e-06 Score=64.28 Aligned_cols=50 Identities=22% Similarity=0.602 Sum_probs=40.6
Q ss_pred CCCCCCCcccCCCCCCCccccccCCce-ehHHHHhhhhhhcCCCCCCcccccc
Q 018850 270 APSSCPICYEDLDYTDSSFLPCLCGFR-LCLFCHKRILEEDGRCPGCRKPYEH 321 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD~~F~PC~CGyq-iC~fC~~rI~e~dgrCPaCRr~Yde 321 (349)
....|+||++..- |..|...||||. +|..|..++.....+||-||+++..
T Consensus 6 ~~~~C~IC~~~~~--~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPR--DGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBS--CEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCC--CeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 4678999998653 444554689999 9999999998777899999999854
No 37
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.06 E-value=2.6e-06 Score=66.81 Aligned_cols=54 Identities=33% Similarity=0.662 Sum_probs=42.2
Q ss_pred CCCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhc-CCCCCCccccccCcc
Q 018850 268 LAAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEED-GRCPGCRKPYEHDQV 324 (349)
Q Consensus 268 ~~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~d-grCPaCRr~Yde~~~ 324 (349)
+....+||||++.|.. .....+|||.+|..|+.+.+... ..||.||+++....+
T Consensus 19 l~~~~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l 73 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRD---ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLREL 73 (100)
T ss_dssp HHHHTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCccCCccccC---ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHh
Confidence 3457899999999963 22225799999999999888755 689999999976544
No 38
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.03 E-value=3e-06 Score=66.68 Aligned_cols=50 Identities=22% Similarity=0.369 Sum_probs=40.8
Q ss_pred CCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCccccccC
Q 018850 270 APSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHD 322 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde~ 322 (349)
....||||.+.|.. .....+|||.+|..|+.+.+.....||.||+++...
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFID---ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhC---cCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 46799999998853 222248999999999999887778999999998764
No 39
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.02 E-value=3.4e-06 Score=67.66 Aligned_cols=53 Identities=26% Similarity=0.595 Sum_probs=41.7
Q ss_pred CCCCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhc-CCCCCCccccccCc
Q 018850 267 VLAAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEED-GRCPGCRKPYEHDQ 323 (349)
Q Consensus 267 ~~~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~d-grCPaCRr~Yde~~ 323 (349)
.+.....||||++.|... .-.+|||.+|..|+.+.+... ..||.||+++....
T Consensus 14 ~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 14 PLESKYECPICLMALREA----VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (118)
T ss_dssp CCCGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCcCChhhcCe----EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence 344567999999998642 225799999999999987644 49999999997754
No 40
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.00 E-value=3.1e-06 Score=71.15 Aligned_cols=48 Identities=31% Similarity=0.668 Sum_probs=39.0
Q ss_pred CCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhh-cCCCCCCcccccc
Q 018850 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEE-DGRCPGCRKPYEH 321 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~-dgrCPaCRr~Yde 321 (349)
...||||++.|.. .....+|||.+|..|+.+.+.. ...||.||.++..
T Consensus 54 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKN---TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhhC---cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 5689999999874 2222499999999999998874 7789999999853
No 41
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.97 E-value=2.5e-06 Score=67.64 Aligned_cols=47 Identities=30% Similarity=0.576 Sum_probs=37.8
Q ss_pred CCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhh-cCCCCCCcccccc
Q 018850 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEE-DGRCPGCRKPYEH 321 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~-dgrCPaCRr~Yde 321 (349)
..+||||++.|.. -.. .+|||.+|..|+.+.+.. ...||.||+++..
T Consensus 15 ~~~C~iC~~~~~~--p~~--~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVE--PVT--LPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSS--CEE--CTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccCc--eeE--cCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 5689999998863 222 379999999999998764 6789999999864
No 42
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.92 E-value=8e-06 Score=60.99 Aligned_cols=44 Identities=25% Similarity=0.626 Sum_probs=35.3
Q ss_pred CCCCCCcccCCCCCCCccccccCCce-ehHHHHhhhhhhcCCCCCCccccccC
Q 018850 271 PSSCPICYEDLDYTDSSFLPCLCGFR-LCLFCHKRILEEDGRCPGCRKPYEHD 322 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~CGyq-iC~fC~~rI~e~dgrCPaCRr~Yde~ 322 (349)
..+||||++.+. +..| .+|||. +|..|..++ ..||.||+++...
T Consensus 25 ~~~C~IC~~~~~--~~~~--~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNI--AIVF--VPCGHLVTCKQCAEAV----DKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCC--CBCC--SSSCCCCBCHHHHHHC----SBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCC--CEEE--ecCCCHHHHHHHhhCC----CCCccCCceecCc
Confidence 568999999863 4444 468999 999999765 6899999998764
No 43
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.92 E-value=6.9e-06 Score=66.71 Aligned_cols=51 Identities=20% Similarity=0.457 Sum_probs=41.9
Q ss_pred CCCCCCCcccCCCCC--------------CCccccccCCceehHHHHhhhhhhcCCCCCCccccc
Q 018850 270 APSSCPICYEDLDYT--------------DSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYE 320 (349)
Q Consensus 270 ~~~~CPIC~E~LDlT--------------D~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yd 320 (349)
...+|+||++.|+.. |-.....+|||.++..|..+-+.....||.||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 378999999999865 223455789999999999888777789999999874
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.89 E-value=6.3e-06 Score=69.75 Aligned_cols=48 Identities=23% Similarity=0.500 Sum_probs=39.0
Q ss_pred CCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhc-CCCCCCccccccC
Q 018850 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEED-GRCPGCRKPYEHD 322 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~d-grCPaCRr~Yde~ 322 (349)
...||||++.|.. -. -.+|||.+|..|+.+.+... ..||.||.++...
T Consensus 78 ~~~C~IC~~~~~~--pv--~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQ--PV--TTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSS--EE--ECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcC--CE--EcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 5789999998853 12 26899999999999887643 4899999999876
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.88 E-value=6.7e-06 Score=65.26 Aligned_cols=50 Identities=30% Similarity=0.602 Sum_probs=40.6
Q ss_pred CCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhh-cCCCCCCccccccCcc
Q 018850 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEE-DGRCPGCRKPYEHDQV 324 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~-dgrCPaCRr~Yde~~~ 324 (349)
...||||.+.|.. -. -.+|||.+|..|+.+.+.. ...||.||+++....+
T Consensus 23 ~~~C~IC~~~~~~--p~--~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 73 (116)
T 1rmd_A 23 SISCQICEHILAD--PV--ETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73 (116)
T ss_dssp HTBCTTTCSBCSS--EE--ECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCcHhcC--cE--EcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhc
Confidence 6789999999853 12 2589999999999998875 6789999999976554
No 46
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.88 E-value=4e-06 Score=66.02 Aligned_cols=55 Identities=29% Similarity=0.720 Sum_probs=44.8
Q ss_pred CCCCCCCcccCCCCC---CCccccccCCceehHHHHhhhhhhcCCCCCCccccccCcc
Q 018850 270 APSSCPICYEDLDYT---DSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHDQV 324 (349)
Q Consensus 270 ~~~~CPIC~E~LDlT---D~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde~~~ 324 (349)
....||||++.|... ......++|||.+|..|..+.+.....||.||+++..+.+
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 128 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 128 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGE
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcc
Confidence 367899999998653 2233567899999999999988877899999999987654
No 47
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.85 E-value=1.4e-05 Score=56.91 Aligned_cols=44 Identities=36% Similarity=0.729 Sum_probs=34.6
Q ss_pred CCCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhh---hcCCCCCC
Q 018850 268 LAAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILE---EDGRCPGC 315 (349)
Q Consensus 268 ~~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e---~dgrCPaC 315 (349)
+....+||||++.|.. -. -.+|||.+|..|+.+.++ ...+||.|
T Consensus 17 ~~~~~~C~IC~~~~~~--p~--~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQK--PV--TIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSS--CE--ECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCC--eE--EeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3457899999998873 22 248999999999999986 34589988
No 48
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.83 E-value=1.7e-05 Score=54.98 Aligned_cols=44 Identities=36% Similarity=0.758 Sum_probs=34.6
Q ss_pred CCCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhh---hcCCCCCC
Q 018850 268 LAAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILE---EDGRCPGC 315 (349)
Q Consensus 268 ~~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e---~dgrCPaC 315 (349)
+.....||||++.|... .-.+|||.+|..|+.+.+. ....||.|
T Consensus 12 ~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEP----VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSC----CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCcc----EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34578999999999642 2257999999999999843 45789988
No 49
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.81 E-value=1.1e-05 Score=68.02 Aligned_cols=53 Identities=26% Similarity=0.597 Sum_probs=42.3
Q ss_pred CCCCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhh-cCCCCCCccccccCc
Q 018850 267 VLAAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEE-DGRCPGCRKPYEHDQ 323 (349)
Q Consensus 267 ~~~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~-dgrCPaCRr~Yde~~ 323 (349)
.+.....||||.+.|..- .-++|||.+|..|+.+++.. ...||.||.++....
T Consensus 14 ~~~~~~~C~IC~~~~~~p----v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (170)
T 3hcs_A 14 PLESKYECPICLMALREA----VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (170)
T ss_dssp CCCGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCChhhcCc----EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhh
Confidence 444578999999998642 22789999999999999864 459999999997753
No 50
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.78 E-value=6e-06 Score=63.79 Aligned_cols=54 Identities=22% Similarity=0.634 Sum_probs=39.3
Q ss_pred CCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhh---hc-----CCCCC--Cccc--cccCcc
Q 018850 270 APSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILE---ED-----GRCPG--CRKP--YEHDQV 324 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e---~d-----grCPa--CRr~--Yde~~~ 324 (349)
...+||||++++...+. +..-+|||.+|.-||.+..+ .+ -+||. ||.. +....+
T Consensus 4 ~~~~C~IC~~~~~~~~~-~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i 69 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQM-TTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI 69 (94)
T ss_dssp SBCCCSSSCCCCBGGGE-EEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH
T ss_pred CCcCCcccCcccccccc-eEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH
Confidence 36789999999865432 23347999999999988754 12 37999 9998 555444
No 51
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.75 E-value=3.9e-05 Score=59.46 Aligned_cols=53 Identities=19% Similarity=0.447 Sum_probs=43.6
Q ss_pred CCCCCCCcccCCCCCCCccccccC---CceehHHHHhhhhhhc--CCCCCCccccccC
Q 018850 270 APSSCPICYEDLDYTDSSFLPCLC---GFRLCLFCHKRILEED--GRCPGCRKPYEHD 322 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD~~F~PC~C---GyqiC~fC~~rI~e~d--grCPaCRr~Yde~ 322 (349)
....|+||+++++..+....||.| +|.+.+-|+.+-+... ..||-||.+|.-.
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 467899999999887777789988 3999999988877643 5899999999654
No 52
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.67 E-value=2.2e-05 Score=55.84 Aligned_cols=46 Identities=22% Similarity=0.484 Sum_probs=36.0
Q ss_pred CCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCccccccC
Q 018850 270 APSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHD 322 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde~ 322 (349)
...+||||++.|.. - .-.+|||.+|..|+.+ ....||.||+++...
T Consensus 5 ~~~~C~IC~~~~~~--p--~~l~CgH~fC~~Ci~~---~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 5 QFLRCQQCQAEAKC--P--KLLPCLHTLCSGCLEA---SGMQCPICQAPWPLG 50 (56)
T ss_dssp CCSSCSSSCSSCBC--C--SCSTTSCCSBTTTCSS---SSSSCSSCCSSSSCC
T ss_pred cCCCceEeCCccCC--e--EEcCCCCcccHHHHcc---CCCCCCcCCcEeecC
Confidence 36789999998863 2 3356999999999776 357899999998653
No 53
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.63 E-value=2e-05 Score=58.90 Aligned_cols=45 Identities=24% Similarity=0.625 Sum_probs=36.2
Q ss_pred CCCCCCCcccCCCCCCCccccccCCce-ehHHHHhhhhhhcCCCCCCccccccC
Q 018850 270 APSSCPICYEDLDYTDSSFLPCLCGFR-LCLFCHKRILEEDGRCPGCRKPYEHD 322 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD~~F~PC~CGyq-iC~fC~~rI~e~dgrCPaCRr~Yde~ 322 (349)
....|+||++.+. |..|. +|||. +|..|+.++ ..||.||+++...
T Consensus 23 ~~~~C~iC~~~~~--~~~~~--pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 23 EEKLCKICMDRNI--AIVFV--PCGHLVTCKQCAEAV----DKCPMCYTVITFK 68 (74)
T ss_dssp HHTBCTTTSSSBC--CEEEE--TTCCBCCCHHHHTTC----SBCTTTCCBCSEE
T ss_pred cCCCCCCCCCCCC--CEEEc--CCCChhHHHHhhhcC----ccCCCcCcCccCc
Confidence 3578999998764 34443 79999 999999887 7899999998653
No 54
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.59 E-value=9.5e-06 Score=67.53 Aligned_cols=51 Identities=20% Similarity=0.456 Sum_probs=0.6
Q ss_pred CCCCCCcccCCCCC--------------CCccccccCCceehHHHHhhhhhhcCCCCCCcccccc
Q 018850 271 PSSCPICYEDLDYT--------------DSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEH 321 (349)
Q Consensus 271 ~~~CPIC~E~LDlT--------------D~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde 321 (349)
..+|+||+++|+.. +......+|+|.++.-|..+-+.....||-||+++.-
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 68999999999753 2344456899999999988877667889999998753
No 55
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.54 E-value=7.8e-05 Score=59.31 Aligned_cols=51 Identities=20% Similarity=-0.000 Sum_probs=41.3
Q ss_pred CCCCCCCCcccCCCCCCCccccccCC-ceehHHHHhhhhhhcCCCCCCccccccCc
Q 018850 269 AAPSSCPICYEDLDYTDSSFLPCLCG-FRLCLFCHKRILEEDGRCPGCRKPYEHDQ 323 (349)
Q Consensus 269 ~~~~~CPIC~E~LDlTD~~F~PC~CG-yqiC~fC~~rI~e~dgrCPaCRr~Yde~~ 323 (349)
...+.||||.+.|.. -.-.+|| |.+|+-|..+.+..+..||.||+++....
T Consensus 20 p~~~~CpI~~~~m~d----PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~ 71 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD----PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQ 71 (98)
T ss_dssp CTTTBCTTTCSBCSS----EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTT
T ss_pred cHhcCCcCccccccC----CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhh
Confidence 347899999999852 1225799 99999999988877889999999997653
No 56
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=97.54 E-value=7.3e-05 Score=57.62 Aligned_cols=50 Identities=12% Similarity=-0.080 Sum_probs=40.7
Q ss_pred CCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCccccccC
Q 018850 269 AAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHD 322 (349)
Q Consensus 269 ~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde~ 322 (349)
...+.||||.+.|.. =. -.+|||.+|+-|..+....++.||.||.++...
T Consensus 12 p~~~~CpI~~~~m~d--PV--~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD--PV--RLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBCSS--EE--ECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred chheECcccCchhcC--Ce--ECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 357899999999853 22 245999999999988887788999999998764
No 57
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.51 E-value=0.0001 Score=54.96 Aligned_cols=45 Identities=24% Similarity=0.564 Sum_probs=35.5
Q ss_pred CCCCCCCcccCCCCCCCccccccCCce-ehHHHHhhhhhhcCCCCCCccccccC
Q 018850 270 APSSCPICYEDLDYTDSSFLPCLCGFR-LCLFCHKRILEEDGRCPGCRKPYEHD 322 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD~~F~PC~CGyq-iC~fC~~rI~e~dgrCPaCRr~Yde~ 322 (349)
....|+||++..- |..| .||||. +|..|..++ ..||.||+++...
T Consensus 14 ~~~~C~IC~~~~~--~~v~--~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 14 NSKDCVVCQNGTV--NWVL--LPCRHTCLCDGCVKYF----QQCPMCRQFVQES 59 (68)
T ss_dssp CSSCCSSSSSSCC--CCEE--TTTTBCCSCTTHHHHC----SSCTTTCCCCCCE
T ss_pred CCCCCCCcCcCCC--CEEE--ECCCChhhhHHHHhcC----CCCCCCCcchhce
Confidence 4678999998653 4444 568999 999999854 6899999988763
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.50 E-value=6.8e-05 Score=65.63 Aligned_cols=50 Identities=18% Similarity=0.109 Sum_probs=38.8
Q ss_pred CCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcC-CCCCCccccccCc
Q 018850 270 APSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDG-RCPGCRKPYEHDQ 323 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dg-rCPaCRr~Yde~~ 323 (349)
..+.||||.+.|.. =. -.+|||.+|.-|..+.+...+ .||.||.++....
T Consensus 207 ~~~~c~i~~~~~~d--Pv--~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~ 257 (281)
T 2c2l_A 207 DYLCGKISFELMRE--PC--ITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ 257 (281)
T ss_dssp STTBCTTTCSBCSS--EE--ECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred cccCCcCcCCHhcC--Ce--ECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhc
Confidence 47899999999852 12 245999999999888876544 4999999997543
No 59
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.46 E-value=9.2e-05 Score=59.08 Aligned_cols=51 Identities=12% Similarity=-0.086 Sum_probs=40.9
Q ss_pred CCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCccccccCc
Q 018850 269 AAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHDQ 323 (349)
Q Consensus 269 ~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde~~ 323 (349)
...+.||||.+.|.. =.. .+|||.+|+-|..+.+..+..||.||.++....
T Consensus 27 p~~~~CpI~~~~m~d--PV~--~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 77 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD--PVR--LPSGTIMDRSIILRHLLNSPTDPFNRQTLTESM 77 (100)
T ss_dssp STTTBCTTTCSBCSS--EEE--ETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTS
T ss_pred cHhhCCcCccCcccC--CeE--CCCCCEEchHHHHHHHHcCCCCCCCCCCCChhh
Confidence 347899999999852 222 459999999999888777789999999997643
No 60
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.45 E-value=2.1e-05 Score=66.06 Aligned_cols=48 Identities=31% Similarity=0.674 Sum_probs=38.6
Q ss_pred CCCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhc-CCCCCCcccc
Q 018850 268 LAAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEED-GRCPGCRKPY 319 (349)
Q Consensus 268 ~~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~d-grCPaCRr~Y 319 (349)
+....+||||.+.|..- .-++|||.+|..|+.+.+... ..||.||+++
T Consensus 28 l~~~~~C~IC~~~~~~p----v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRP----FQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CCGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CCcCcCCCCCChhhcCc----EECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 34578999999998542 226999999999999988644 4899999975
No 61
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.33 E-value=0.0001 Score=72.41 Aligned_cols=49 Identities=31% Similarity=0.549 Sum_probs=39.6
Q ss_pred CCCCCCcccCCCCCCCccccccCCceehHHHHhhhhh-hcCCCCCCccccccCc
Q 018850 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILE-EDGRCPGCRKPYEHDQ 323 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e-~dgrCPaCRr~Yde~~ 323 (349)
..+||||++.+. + -.-.+|||.+|.-|....+. ....||-||+++....
T Consensus 332 ~~~C~ICle~~~--~--pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDK--D--VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBC--C--EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCC--C--eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 479999999884 2 23468999999999988876 5789999999987643
No 62
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.25 E-value=0.00011 Score=56.20 Aligned_cols=45 Identities=38% Similarity=0.861 Sum_probs=35.9
Q ss_pred CCCCCCcccCCCCCCCccccccCCce-ehHHHHhhhhhhcCCCCCCccccccCc
Q 018850 271 PSSCPICYEDLDYTDSSFLPCLCGFR-LCLFCHKRILEEDGRCPGCRKPYEHDQ 323 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~CGyq-iC~fC~~rI~e~dgrCPaCRr~Yde~~ 323 (349)
...|+||++.+- |..| .+|||. +|..|..++. .||.||.++....
T Consensus 18 ~~~C~IC~~~~~--~~v~--~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~~~ 63 (79)
T 2yho_A 18 AMLCMVCCEEEI--NSTF--CPCGHTVCCESCAAQLQ----SCPVCRSRVEHVQ 63 (79)
T ss_dssp HTBCTTTSSSBC--CEEE--ETTCBCCBCHHHHTTCS----BCTTTCCBCCEEE
T ss_pred CCEeEEeCcccC--cEEE--ECCCCHHHHHHHHHhcC----cCCCCCchhhCeE
Confidence 468999998753 4444 479999 9999999873 8999999987643
No 63
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.07 E-value=0.00016 Score=69.36 Aligned_cols=46 Identities=24% Similarity=0.650 Sum_probs=37.0
Q ss_pred CCCCCCCCcccCCCCCCCccccccCCce-ehHHHHhhhhhhcCCCCCCccccccC
Q 018850 269 AAPSSCPICYEDLDYTDSSFLPCLCGFR-LCLFCHKRILEEDGRCPGCRKPYEHD 322 (349)
Q Consensus 269 ~~~~~CPIC~E~LDlTD~~F~PC~CGyq-iC~fC~~rI~e~dgrCPaCRr~Yde~ 322 (349)
.....||||++.+. +..+ .+|||. +|..|..++ ..||.||.++...
T Consensus 293 ~~~~~C~IC~~~~~--~~v~--lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 293 QEERTCKVCMDKEV--SVVF--IPCGHLVVCQECAPSL----RKCPICRGIIKGT 339 (345)
T ss_dssp HTTCBCTTTSSSBC--CEEE--ETTCCEEECTTTGGGC----SBCTTTCCBCCEE
T ss_pred cCCCCCCccCCcCC--ceEE--cCCCChhHhHHHHhcC----CcCCCCCCCccCe
Confidence 34689999999874 3343 479999 999999987 6899999998653
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=96.86 E-value=0.00066 Score=60.17 Aligned_cols=48 Identities=19% Similarity=0.090 Sum_probs=38.2
Q ss_pred CCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcC-CCCCCccccccC
Q 018850 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDG-RCPGCRKPYEHD 322 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dg-rCPaCRr~Yde~ 322 (349)
.+.||||.+.|.. = .-.+|||.+|+-|..+....++ .||.||.++...
T Consensus 106 ~f~CPI~~elm~D--P--V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 106 YLCGKISFELMRE--P--CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp GGBCTTTCSBCSS--E--EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred hhcccCccccCCC--C--eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 6789999999963 1 2236999999999888876555 499999999764
No 65
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.77 E-value=0.001 Score=51.85 Aligned_cols=48 Identities=23% Similarity=0.489 Sum_probs=36.7
Q ss_pred CCCCCCCcccCCCCCCCccccc-cCCceehHHHHhhhhhhc------CCCCC--Cccc-ccc
Q 018850 270 APSSCPICYEDLDYTDSSFLPC-LCGFRLCLFCHKRILEED------GRCPG--CRKP-YEH 321 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD~~F~PC-~CGyqiC~fC~~rI~e~d------grCPa--CRr~-Yde 321 (349)
..+.||||.+.|.. -.-. .|||.+|+-|..+.+... ..||. |++. +..
T Consensus 6 ~~~~CPI~~~~~~d----PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 6 SGFTCPITKEEMKK----PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SCCBCTTTCSBCSS----EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred cEeECcCcCchhcC----CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence 47899999999863 1224 499999999988887643 48999 9977 544
No 66
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=95.85 E-value=0.0056 Score=45.00 Aligned_cols=50 Identities=10% Similarity=0.088 Sum_probs=40.5
Q ss_pred CCCCCCcccCCCCCCCccccc-cCCceehHHHHhhhhhhcCCCCCCccccccCcc
Q 018850 271 PSSCPICYEDLDYTDSSFLPC-LCGFRLCLFCHKRILEEDGRCPGCRKPYEHDQV 324 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC-~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde~~~ 324 (349)
.+.||||.+.|.. - .-. +|||.+|+-|..+.+..++.||.+++++..+.+
T Consensus 3 ~~~CpIs~~~m~d--P--V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~L 53 (61)
T 2bay_A 3 HMLCAISGKVPRR--P--VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI 53 (61)
T ss_dssp -CCCTTTCSCCSS--E--EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred eEEecCCCCCCCC--C--EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhc
Confidence 4789999999983 2 334 799999999988888777889999999976544
No 67
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=95.55 E-value=0.0061 Score=57.61 Aligned_cols=53 Identities=15% Similarity=0.311 Sum_probs=39.3
Q ss_pred CCCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhc--CCCCC--CccccccCcc
Q 018850 269 AAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEED--GRCPG--CRKPYEHDQV 324 (349)
Q Consensus 269 ~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~d--grCPa--CRr~Yde~~~ 324 (349)
.....||||.+.|.. -..--.|||.+|..|+.+..... ..||- ||+++....+
T Consensus 179 ~~el~CPIcl~~f~D---PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL 235 (267)
T 3htk_C 179 KIELTCPITCKPYEA---PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDF 235 (267)
T ss_dssp BCCSBCTTTSSBCSS---EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGE
T ss_pred ceeeECcCccCcccC---CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhC
Confidence 357899999999942 11113799999999998887643 47999 9998865443
No 68
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=95.51 E-value=0.015 Score=47.75 Aligned_cols=51 Identities=29% Similarity=0.736 Sum_probs=43.1
Q ss_pred CCCCCCcccCCCCCC--Ccccccc-CCceehHHHHhhhhh-hcCCCCCCcccccc
Q 018850 271 PSSCPICYEDLDYTD--SSFLPCL-CGFRLCLFCHKRILE-EDGRCPGCRKPYEH 321 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD--~~F~PC~-CGyqiC~fC~~rI~e-~dgrCPaCRr~Yde 321 (349)
...|-||-++.-+|. -.|..|. |+|-+|.-||..-+. .+.-||-|..+|..
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 468999999976653 4799997 999999999987764 67889999999973
No 69
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.64 E-value=0.048 Score=42.10 Aligned_cols=52 Identities=33% Similarity=0.719 Sum_probs=39.8
Q ss_pred CCCCCCCcccCCCCCCCccccc-cCCceehHHHHhhhhhhc--CCCCCCccccccCccc
Q 018850 270 APSSCPICYEDLDYTDSSFLPC-LCGFRLCLFCHKRILEED--GRCPGCRKPYEHDQVE 325 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD~~F~PC-~CGyqiC~fC~~rI~e~d--grCPaCRr~Yde~~~~ 325 (349)
...+|+||.+.+...+ . | .|++.+=.-|+.+-+... ..||.||++.....-+
T Consensus 14 ~i~~C~IC~~~i~~g~-~---C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~~ 68 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQ-S---CETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPK 68 (74)
T ss_dssp SSCBCSSSCCBCSSSE-E---CSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCCC
T ss_pred CCCcCcchhhHcccCC-c---cCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCCC
Confidence 4689999999997532 2 4 799999899988876533 7899999987654433
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=94.06 E-value=0.037 Score=40.62 Aligned_cols=47 Identities=32% Similarity=0.605 Sum_probs=32.0
Q ss_pred CCCCCCcccCCCCCCCccccccCCc------eehHHHHhhhhhhcCCCCCCccccc
Q 018850 271 PSSCPICYEDLDYTDSSFLPCLCGF------RLCLFCHKRILEEDGRCPGCRKPYE 320 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~CGy------qiC~fC~~rI~e~dgrCPaCRr~Yd 320 (349)
...|.||.++.+ +..+.||.|.. +-|+.=|-... .+..||.||.+|.
T Consensus 6 ~~~CrIC~~~~~--~~l~~PC~C~gs~~~~H~~Cl~~W~~~~-~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 6 VPVCWICNEELG--NERFRACGCTGELENVHRSCLSTWLTIS-RNTACQICGVVYN 58 (60)
T ss_dssp CCEETTTTEECS--CCCCCSCCCSSGGGSCCHHHHHHHHHHH-TCSBCTTTCCBCC
T ss_pred CCEeEEeecCCC--CceecCcCCCCchhhhHHHHHHHHHHhC-CCCccCCCCCeee
Confidence 578999999854 33479999943 33444443322 2578999999985
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=92.03 E-value=0.071 Score=52.69 Aligned_cols=52 Identities=19% Similarity=0.520 Sum_probs=36.5
Q ss_pred CCCCCCCcccCCCCCC-Cccccc---cCCceehHHHHhhhhh-----------hcCCCCCCcccccc
Q 018850 270 APSSCPICYEDLDYTD-SSFLPC---LCGFRLCLFCHKRILE-----------EDGRCPGCRKPYEH 321 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD-~~F~PC---~CGyqiC~fC~~rI~e-----------~dgrCPaCRr~Yde 321 (349)
...+|+||++.+...+ +.-+.| +|||.+=.-|+.+=+. ..|.||-||.+...
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 4779999999987633 222446 5999887778655332 12789999998753
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=89.24 E-value=0.25 Score=41.00 Aligned_cols=46 Identities=24% Similarity=0.467 Sum_probs=35.9
Q ss_pred CCCCcccCCCCCCCccccccCCceehHHHHhhhhh-hcCCCCCCcccccc
Q 018850 273 SCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILE-EDGRCPGCRKPYEH 321 (349)
Q Consensus 273 ~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e-~dgrCPaCRr~Yde 321 (349)
-|++|--++-. .-+--||.|-+|+-|...+.. .+..||.||.+...
T Consensus 3 fC~~C~~Pi~i---ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKV---YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSE---EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEE---EeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 47888766655 335589999999999988864 67899999988753
No 73
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=85.01 E-value=0.81 Score=41.67 Aligned_cols=50 Identities=32% Similarity=0.723 Sum_probs=39.3
Q ss_pred CCCCCCCcccCCCCCCCcccccc-CCceehHHHHhhhhh--hcCCCCCCccccccCc
Q 018850 270 APSSCPICYEDLDYTDSSFLPCL-CGFRLCLFCHKRILE--EDGRCPGCRKPYEHDQ 323 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD~~F~PC~-CGyqiC~fC~~rI~e--~dgrCPaCRr~Yde~~ 323 (349)
....|.||.+-.-. + .-|+ |++++=..|+.+... .+.+||.|+.+.....
T Consensus 179 ~i~~C~iC~~iv~~-g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~ 231 (238)
T 3nw0_A 179 AVKICNICHSLLIQ-G---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 231 (238)
T ss_dssp TCCBCTTTCSBCSS-C---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCC
T ss_pred CCCcCcchhhHHhC-C---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence 47899999999885 3 4476 999999999988764 3469999999876553
No 74
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=80.65 E-value=3 Score=34.03 Aligned_cols=45 Identities=29% Similarity=0.774 Sum_probs=33.5
Q ss_pred CCCCCCCCCcccCCCCCCCccccccC--CceehHHHHhhh-hh----hcCCCCC
Q 018850 268 LAAPSSCPICYEDLDYTDSSFLPCLC--GFRLCLFCHKRI-LE----EDGRCPG 314 (349)
Q Consensus 268 ~~~~~~CPIC~E~LDlTD~~F~PC~C--GyqiC~fC~~rI-~e----~dgrCPa 314 (349)
.+....|-||-|.|. |..|..||= .|.+|+-|-..- +. .+.-||-
T Consensus 12 ~~a~l~CtlC~erLE--dtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPS 63 (93)
T 2cs3_A 12 NSGPLCCTICHERLE--DTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPS 63 (93)
T ss_dssp SCCSCCCSSSCSCCS--STTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTT
T ss_pred CCCeeEeecchhhhc--cCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCC
Confidence 456889999999986 668888885 999999996554 33 2345663
No 75
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=73.13 E-value=2 Score=32.88 Aligned_cols=25 Identities=32% Similarity=0.524 Sum_probs=19.7
Q ss_pred cCCcchhccc----------cCccccHHHHHHHhh
Q 018850 139 SGSITEEEEE----------DGCLDDWEAVADALA 163 (349)
Q Consensus 139 SgsitEee~d----------DgclDDWEAvADAL~ 163 (349)
++.-|+||+. .|.-|.||.||.+|.
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg 42 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG 42 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC
Confidence 4456999884 566789999999984
No 76
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=68.06 E-value=0.54 Score=39.09 Aligned_cols=42 Identities=31% Similarity=0.693 Sum_probs=31.6
Q ss_pred CCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCcccccc
Q 018850 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEH 321 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde 321 (349)
...||.|-.+|+.++ +|..|..|...+. ..+.||.|.++...
T Consensus 32 ~~~CP~Cq~eL~~~g--------~~~hC~~C~~~f~-~~a~CPdC~q~Lev 73 (101)
T 2jne_A 32 ELHCPQCQHVLDQDN--------GHARCRSCGEFIE-MKALCPDCHQPLQV 73 (101)
T ss_dssp CCBCSSSCSBEEEET--------TEEEETTTCCEEE-EEEECTTTCSBCEE
T ss_pred cccCccCCCcceecC--------CEEECccccchhh-ccccCcchhhHHHH
Confidence 479999999998754 5556778866542 46889999988753
No 77
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=66.36 E-value=2.1 Score=45.19 Aligned_cols=28 Identities=36% Similarity=0.846 Sum_probs=20.0
Q ss_pred CCCCCCCCCCcccCC-CCCCCcc-cc---cc-CC
Q 018850 267 VLAAPSSCPICYEDL-DYTDSSF-LP---CL-CG 294 (349)
Q Consensus 267 ~~~~~~~CPIC~E~L-DlTD~~F-~P---C~-CG 294 (349)
+..-..+||-|..+| |+.|+.| +| |+ ||
T Consensus 107 i~pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CG 140 (761)
T 3vth_A 107 VSPDMGVCEDCLRELKDPKDRRYRYPFINCTNCG 140 (761)
T ss_dssp CCCCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBB
T ss_pred cCCCccccHHHHHHhcCCCccccCCCcccCCCCC
Confidence 333456899999886 8899887 33 65 77
No 78
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=65.33 E-value=1.3 Score=35.24 Aligned_cols=41 Identities=29% Similarity=0.749 Sum_probs=30.2
Q ss_pred CCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCcccccc
Q 018850 272 SSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEH 321 (349)
Q Consensus 272 ~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde 321 (349)
..||.|-.+|+.+.. +..|..|-..+.. ++.||.|.++...
T Consensus 3 ~~CP~C~~~l~~~~~--------~~~C~~C~~~~~~-~afCPeCgq~Le~ 43 (81)
T 2jrp_A 3 ITCPVCHHALERNGD--------TAHCETCAKDFSL-QALCPDCRQPLQV 43 (81)
T ss_dssp CCCSSSCSCCEECSS--------EEECTTTCCEEEE-EEECSSSCSCCCE
T ss_pred CCCCCCCCccccCCC--------ceECccccccCCC-cccCcchhhHHHH
Confidence 589999999987554 5567778776642 3488888887754
No 79
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=59.53 E-value=3.5 Score=31.75 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=10.8
Q ss_pred CCCCCcCCCCCCCCccccccCCCCCCCCCCcccCCCCC
Q 018850 247 SFPAADRHFGQGGVPWACNNVLAAPSSCPICYEDLDYT 284 (349)
Q Consensus 247 sfp~~~~~~g~~g~~w~~~~~~~~~~~CPIC~E~LDlT 284 (349)
.+|.+..+.|.+|+.-.. ......|+-|-.++++.
T Consensus 7 q~p~~~~~~~~~g~~~~~---~~v~Y~C~~CG~~~e~~ 41 (70)
T 1twf_L 7 QIPTNLDAAAAGTSQART---ATLKYICAECSSKLSLS 41 (70)
T ss_dssp ---------------------CCCCEECSSSCCEECCC
T ss_pred cCCCCcCccccccccCCC---ceEEEECCCCCCcceeC
Confidence 456644455666554322 23466788887775553
No 80
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=57.90 E-value=4 Score=35.31 Aligned_cols=48 Identities=23% Similarity=0.519 Sum_probs=35.6
Q ss_pred CCCCCCcccCCCCCCCcccccc-CCceehHHHHhhhhh-hcCCCCCCccc
Q 018850 271 PSSCPICYEDLDYTDSSFLPCL-CGFRLCLFCHKRILE-EDGRCPGCRKP 318 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~-CGyqiC~fC~~rI~e-~dgrCPaCRr~ 318 (349)
...|.+|..+|.+.+-....|. |.+.+|.-|-.-+.. ..-.|-.|++.
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSSSSSCEEHHHHHH
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhcccccccCCCCcEeeHHHHHH
Confidence 5689999999998887888887 999999999643332 23356666543
No 81
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=56.41 E-value=8.3 Score=29.33 Aligned_cols=35 Identities=23% Similarity=0.408 Sum_probs=24.0
Q ss_pred CCCCCCCcccCCCCCCCccccccCCceehHHHHhhh
Q 018850 270 APSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRI 305 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI 305 (349)
.+..|+||.+.+- .+-...=..|++.+|..|+..+
T Consensus 2 ee~~C~~C~~~~~-~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPA-QDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSC-CBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCC-CCceEECCcCChHHhHHHCHHH
Confidence 3578999998642 1222222569999999998764
No 82
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=54.69 E-value=10 Score=29.96 Aligned_cols=51 Identities=25% Similarity=0.417 Sum_probs=38.2
Q ss_pred CCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCcccccc
Q 018850 270 APSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEH 321 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde 321 (349)
.=+.|-.|-..|+..+..|+. .=|.-+|.-||.++....++|..|.+++..
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~-~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYY-KLGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEE-ETTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred HHcccCcCCCccccCCCeEEE-ECCEEeecCchhhhCCCccChhhcCCccCc
Confidence 357889999999865666654 447778999999886333489999998864
No 83
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=52.92 E-value=13 Score=28.53 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=18.8
Q ss_pred ccCCcchhccc--------cCccccHHHHHHHhh
Q 018850 138 CSGSITEEEEE--------DGCLDDWEAVADALA 163 (349)
Q Consensus 138 cSgsitEee~d--------DgclDDWEAvADAL~ 163 (349)
-.+.-|+|||+ -| ++|..||..|.
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G--~~W~~IA~~v~ 48 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYK--DDWNKVSEHVG 48 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSS--SCHHHHHHHHS
T ss_pred cCCCcCHHHHHHHHHHHHHhC--CCHHHHHHHcC
Confidence 34567999975 44 89999999984
No 84
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=52.38 E-value=5.1 Score=42.24 Aligned_cols=28 Identities=36% Similarity=0.838 Sum_probs=19.5
Q ss_pred CCCCCCCCcccCC-CCCCCcc-cc---cc-CCce
Q 018850 269 AAPSSCPICYEDL-DYTDSSF-LP---CL-CGFR 296 (349)
Q Consensus 269 ~~~~~CPIC~E~L-DlTD~~F-~P---C~-CGyq 296 (349)
.-..+||-|..+| |++|+.| +| |+ ||-+
T Consensus 104 pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR 137 (772)
T 4g9i_A 104 PDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPR 137 (772)
T ss_dssp CCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCC
T ss_pred CchhhhHHHHHHhcCCCCCccCCccccCCCCCch
Confidence 3456899999885 8899887 44 54 5543
No 85
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=48.91 E-value=11 Score=30.05 Aligned_cols=52 Identities=19% Similarity=0.222 Sum_probs=38.2
Q ss_pred CCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCccccccCcc
Q 018850 272 SSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEHDQV 324 (349)
Q Consensus 272 ~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde~~~ 324 (349)
+.|-.|-..|......|+. .=|.-+|.-||.++....++|-.|.+++....+
T Consensus 33 F~C~~C~~~L~~~~~~~~~-~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYT-KSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HCCSSSCCCTTTSEECCEE-ETTEEECHHHHHHHHCCCCSSSCSSCCSCCEES
T ss_pred CCcCCCCCcccccCCeEEE-ECCeeecHHHHHHHcCCCCccccCCCCcCchhe
Confidence 6788898888743345553 346678999999886545599999999986544
No 86
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=46.58 E-value=5.9 Score=32.83 Aligned_cols=46 Identities=30% Similarity=0.764 Sum_probs=34.2
Q ss_pred CCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCcccccc
Q 018850 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEH 321 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde 321 (349)
...|-.|-...+ .+.-|. .|-+|+-|++-++..--|||-|-++.-.
T Consensus 28 ~~nCKsCWf~~k----~LV~C~-dHYLCl~CLtlmL~~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 28 PQFCKSCWFENK----GLVECN-NHYLCLNCLTLLLSVSNRCPICKMPLPT 73 (99)
T ss_dssp CCCCCSSCSCCS----SEEECS-SCEEEHHHHHHTCSSSSEETTTTEECCC
T ss_pred cccChhhccccC----Ceeeec-chhhHHHHHHHHHhhccCCcccCCcCCc
Confidence 456777765433 444443 7889999999998888899999988743
No 87
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=44.51 E-value=9.8 Score=32.13 Aligned_cols=47 Identities=23% Similarity=0.461 Sum_probs=32.7
Q ss_pred CCCCCCcccCCCCCCCcccccc-CCceehHHHHhhhhh----hcCCCCCCcc
Q 018850 271 PSSCPICYEDLDYTDSSFLPCL-CGFRLCLFCHKRILE----EDGRCPGCRK 317 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~-CGyqiC~fC~~rI~e----~dgrCPaCRr 317 (349)
...|.+|..+|.+.+-.-..|. |.+.+|.-|-..+.. ..-+|=-|++
T Consensus 55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 5689999999987665556676 899999988555421 1235666655
No 88
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=40.06 E-value=1.8 Score=45.02 Aligned_cols=22 Identities=14% Similarity=0.702 Sum_probs=17.2
Q ss_pred CCCCCCCCCCcccCC-CCCCCcc
Q 018850 267 VLAAPSSCPICYEDL-DYTDSSF 288 (349)
Q Consensus 267 ~~~~~~~CPIC~E~L-DlTD~~F 288 (349)
+..-.-+||-|..+| |+.|+.|
T Consensus 13 i~pD~a~C~~Cl~e~~dp~~Rry 35 (657)
T 3ttc_A 13 IVPDAATCPACLAEMNTPGERRY 35 (657)
T ss_dssp CCCCBCCCHHHHHHHTSTTSTTT
T ss_pred cCCchhhhHHHHHHhcCCCCccc
Confidence 444456999999886 8899887
No 89
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=39.78 E-value=19 Score=26.63 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=20.2
Q ss_pred CccccCCcchhccc--------cCccccHHHHHHHhh
Q 018850 135 GGCCSGSITEEEEE--------DGCLDDWEAVADALA 163 (349)
Q Consensus 135 ~~~cSgsitEee~d--------DgclDDWEAvADAL~ 163 (349)
-....+..|+|||+ =|- +|..||..|-
T Consensus 5 p~~~~~~WT~eEd~~l~~~~~~~G~--~W~~Ia~~~~ 39 (72)
T 2cu7_A 5 SSGYSVKWTIEEKELFEQGLAKFGR--RWTKISKLIG 39 (72)
T ss_dssp CSSCCCCCCHHHHHHHHHHHHHTCS--CHHHHHHHHS
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHCc--CHHHHHHHcC
Confidence 34466788999986 343 9999999883
No 90
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=39.74 E-value=17 Score=26.03 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=19.5
Q ss_pred ccccCCcchhccc-------cCccccHHHHHHHhh
Q 018850 136 GCCSGSITEEEEE-------DGCLDDWEAVADALA 163 (349)
Q Consensus 136 ~~cSgsitEee~d-------DgclDDWEAvADAL~ 163 (349)
..--+.-|+|||+ .--..+|..||..|.
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~ 39 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC 39 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC
Confidence 3445678999875 111369999999883
No 91
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=39.37 E-value=12 Score=29.98 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=19.0
Q ss_pred ccCCcchhccc----------cCccccHHHHHHHhh
Q 018850 138 CSGSITEEEEE----------DGCLDDWEAVADALA 163 (349)
Q Consensus 138 cSgsitEee~d----------DgclDDWEAvADAL~ 163 (349)
+.+.-|.|||. .+.-+.|+.||.+|-
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp 42 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE 42 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC
Confidence 45567999985 233478999999994
No 92
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=37.11 E-value=15 Score=32.06 Aligned_cols=28 Identities=29% Similarity=0.833 Sum_probs=24.2
Q ss_pred CCCCCCCCcccCCCCCCCcccccc-CCce
Q 018850 269 AAPSSCPICYEDLDYTDSSFLPCL-CGFR 296 (349)
Q Consensus 269 ~~~~~CPIC~E~LDlTD~~F~PC~-CGyq 296 (349)
.....||-|-.++...|-.++-|| |+|.
T Consensus 25 ~~lP~CP~C~seytYeDg~l~vCPeC~hE 53 (138)
T 2akl_A 25 STLPPCPQCNSEYTYEDGALLVCPECAHE 53 (138)
T ss_dssp CCSCCCTTTCCCCCEECSSSEEETTTTEE
T ss_pred ccCCCCCCCCCcceEecCCeEECCccccc
Confidence 346889999999999999988888 7777
No 93
>1i7w_B E-cadherin, epithelial-cadherin; cell adhesion, beta-catenin, protein-protein complex, extended interface, armadillo repeat, phosphoserin; HET: SEP; 2.00A {Mus musculus} SCOP: j.71.1.1 PDB: 1i7x_B 3ifq_C*
Probab=36.96 E-value=12 Score=32.59 Aligned_cols=25 Identities=12% Similarity=0.403 Sum_probs=9.4
Q ss_pred CCCCccccCCcchhccccCccccHH
Q 018850 132 SSGGGCCSGSITEEEEEDGCLDDWE 156 (349)
Q Consensus 132 sSs~~~cSgsitEee~dDgclDDWE 156 (349)
.+|-+||+-..+++|.+.+.|+||.
T Consensus 111 agSLSsl~S~~~~~d~d~d~L~~wG 135 (151)
T 1i7w_B 111 AASLSSLNSSESDQDQDYDYLNEWG 135 (151)
T ss_dssp CTTCCCC-----------CCTTTSC
T ss_pred cCccccccccCcccCcCchhhcccc
Confidence 3444445444466666789999995
No 94
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=35.39 E-value=5.8 Score=26.92 Aligned_cols=12 Identities=33% Similarity=0.780 Sum_probs=9.2
Q ss_pred CCCCCCcccCCC
Q 018850 271 PSSCPICYEDLD 282 (349)
Q Consensus 271 ~~~CPIC~E~LD 282 (349)
.+.||||+..|.
T Consensus 5 GFiCP~C~~~l~ 16 (34)
T 3mjh_B 5 GFICPQCMKSLG 16 (34)
T ss_dssp EEECTTTCCEES
T ss_pred ccCCcHHHHHcC
Confidence 368999997764
No 95
>2l7x_A Envelope glycoprotein; cytoplasmic tail, viral protein; NMR {Crimean-congo hemorrhagic fever virus}
Probab=35.19 E-value=5.3 Score=31.68 Aligned_cols=44 Identities=25% Similarity=0.791 Sum_probs=29.7
Q ss_pred CCCCCCccc-CCCCCCCccccccCCceehHHHHhhhhhh-----cCCCCC
Q 018850 271 PSSCPICYE-DLDYTDSSFLPCLCGFRLCLFCHKRILEE-----DGRCPG 314 (349)
Q Consensus 271 ~~~CPIC~E-~LDlTD~~F~PC~CGyqiC~fC~~rI~e~-----dgrCPa 314 (349)
..+|-.|-. .+.+-|..+--..|.|.||.+|-+|+.++ -++||.
T Consensus 5 g~~C~kCEq~~vn~~DqelHdlnCs~NiCPYC~nRls~eGl~RHV~~CPK 54 (77)
T 2l7x_A 5 PQTCTICETTPVNAIDAEMHDLNCSYNICPYCASRLTSDGLARHVTQCPK 54 (77)
T ss_dssp CCCCTTTCCCCSSHHHHHHHHHHHTTTCCTTTCCCCCTTTHHHHHTTCSH
T ss_pred CceeeeeccccccHHHHHHHHcCCCcccChhhhccCCccchhhhcccCcc
Confidence 455665532 23334555555779999999999999752 378985
No 96
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=34.42 E-value=8.4 Score=40.67 Aligned_cols=27 Identities=19% Similarity=0.368 Sum_probs=0.0
Q ss_pred CCCCCccccCCcchhccccCccccHHH
Q 018850 131 GSSGGGCCSGSITEEEEEDGCLDDWEA 157 (349)
Q Consensus 131 ssSs~~~cSgsitEee~dDgclDDWEA 157 (349)
..+|-+||+-+.+++|+|.+.|+||.-
T Consensus 838 ~agSlssl~s~~~~~d~d~d~L~~~gp 864 (880)
T 1q55_A 838 EAASLSSLNSSNSNDEHDYNYLSDWGS 864 (880)
T ss_dssp ---------------------------
T ss_pred cCCCchhcccCCCccccChhhhcccch
Confidence 456677787777888889999999974
No 97
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=32.83 E-value=21 Score=28.34 Aligned_cols=10 Identities=40% Similarity=1.045 Sum_probs=7.9
Q ss_pred CCCCCCCCcc
Q 018850 269 AAPSSCPICY 278 (349)
Q Consensus 269 ~~~~~CPIC~ 278 (349)
...-.||||.
T Consensus 15 ~~tWVCpICs 24 (76)
T 2j9u_B 15 VSTWVCPICM 24 (76)
T ss_dssp CEEEECTTTC
T ss_pred ccceECcccc
Confidence 3466899999
No 98
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=32.59 E-value=26 Score=27.16 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=18.3
Q ss_pred Ccchhccc----------cCccccHHHHHHHhh
Q 018850 141 SITEEEEE----------DGCLDDWEAVADALA 163 (349)
Q Consensus 141 sitEee~d----------DgclDDWEAvADAL~ 163 (349)
.-|+||+. .+.-|.||.||.++-
T Consensus 10 ~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~ 42 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG 42 (73)
T ss_dssp CCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC
Confidence 45888884 467789999999985
No 99
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=32.48 E-value=7.5 Score=29.61 Aligned_cols=31 Identities=16% Similarity=0.373 Sum_probs=21.2
Q ss_pred CCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCccccc
Q 018850 270 APSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYE 320 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yd 320 (349)
....||.|..+|.+... +....||+|++.|-
T Consensus 7 ~iL~CP~ck~~L~~~~~--------------------~~~LiC~~cg~~YP 37 (68)
T 2jr6_A 7 DILVCPVTKGRLEYHQD--------------------KQELWSRQAKLAYP 37 (68)
T ss_dssp CCCBCSSSCCBCEEETT--------------------TTEEEETTTTEEEE
T ss_pred hheECCCCCCcCeEeCC--------------------CCEEEcCCCCcEec
Confidence 35689999988875431 11236889999884
No 100
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.84 E-value=22 Score=28.04 Aligned_cols=32 Identities=25% Similarity=0.614 Sum_probs=24.6
Q ss_pred CCCCCCCcccCCCCCCCcccccc-CCceehHHH
Q 018850 270 APSSCPICYEDLDYTDSSFLPCL-CGFRLCLFC 301 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD~~F~PC~-CGyqiC~fC 301 (349)
....|.+|.+.|-+.=-.-.+|+ |.|.+|..|
T Consensus 24 ~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~C 56 (76)
T 2csz_A 24 SDRTCARCQESLGRLSPKTNTCRGCNHLVCRDC 56 (76)
T ss_dssp CCCBCSSSCCBCSSSCTTTSEETTTTEECCTTS
T ss_pred CccchhhhCccccccccCCCcCcccChhhcccc
Confidence 47799999999987554556776 777777766
No 101
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=31.15 E-value=7.9 Score=29.48 Aligned_cols=30 Identities=27% Similarity=0.607 Sum_probs=20.4
Q ss_pred CCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCccccc
Q 018850 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYE 320 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yd 320 (349)
...||.|..+|.+... +....||+|++.|-
T Consensus 8 iL~CP~ck~~L~~~~~--------------------~~~LiC~~cg~~YP 37 (68)
T 2hf1_A 8 ILVCPLCKGPLVFDKS--------------------KDELICKGDRLAFP 37 (68)
T ss_dssp ECBCTTTCCBCEEETT--------------------TTEEEETTTTEEEE
T ss_pred heECCCCCCcCeEeCC--------------------CCEEEcCCCCcEec
Confidence 4579999988765331 11236999999885
No 102
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=31.01 E-value=13 Score=29.54 Aligned_cols=31 Identities=29% Similarity=0.672 Sum_probs=18.3
Q ss_pred CccccccCCceehHHHHhhhhh--hcCCCCCCcc
Q 018850 286 SSFLPCLCGFRLCLFCHKRILE--EDGRCPGCRK 317 (349)
Q Consensus 286 ~~F~PC~CGyqiC~fC~~rI~e--~dgrCPaCRr 317 (349)
..++||+||-++-+ =...|.+ .-..||.|--
T Consensus 21 ~y~ypCrCGd~F~i-t~edL~~ge~iv~C~sCSL 53 (83)
T 1yop_A 21 MFTYPCPCGDRFQI-YLDDMFEGEKVAVCPSCSL 53 (83)
T ss_dssp EEEEEETTTEEEEE-EHHHHHTTCCEEECSSSCC
T ss_pred EEEEeCCCCCeEEE-CHHHHhCCCEEEECCCCcc
Confidence 45699999977522 1222222 1257999964
No 103
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=30.74 E-value=40 Score=25.20 Aligned_cols=46 Identities=26% Similarity=0.485 Sum_probs=33.5
Q ss_pred CCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCcccccc
Q 018850 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEH 321 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde 321 (349)
=+.|-.|-..|+ +..|+. .=|.-+|.-||.++. ..+|..|.+++..
T Consensus 33 CF~C~~C~~~L~--~~~~~~-~~g~~yC~~cy~~~~--~~~C~~C~~~I~~ 78 (101)
T 2cup_A 33 CFRCAKCLHPLA--NETFVA-KDNKILCNKCTTRED--SPKCKGCFKAIVA 78 (101)
T ss_dssp TCCCSSSCCCTT--SSCCEE-ETTEEECHHHHTTCC--CCBCSSSCCBCCS
T ss_pred CCcccccCCCCC--cCeeEC-cCCEEEChhHhhhhc--CCccccCCCcccc
Confidence 467888888885 344442 346678999998764 5699999998873
No 104
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=30.46 E-value=41 Score=26.24 Aligned_cols=46 Identities=17% Similarity=0.314 Sum_probs=34.8
Q ss_pred CCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCcccccc
Q 018850 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYEH 321 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yde 321 (349)
=+.|-.|-..|+. ..|.. .=|.-+|.-||.++. ..+|..|.+++..
T Consensus 30 CF~C~~C~~~L~~--~~f~~-~~g~~yC~~cy~~~~--~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 30 HFCCFDCDSILAG--EIYVM-VNDKPVCKPCYVKNH--AVVCQGCHNAIDP 75 (126)
T ss_dssp GSBCTTTCCBCTT--SEEEE-ETTEEEEHHHHHHHS--CCBCTTTCSBCCT
T ss_pred CCCcCCCCCCCCc--CEEEe-ECCEEechHHhCcCc--CccCcccCCcCCc
Confidence 4688889888874 34432 457788999998874 5689999999874
No 105
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=30.31 E-value=30 Score=25.36 Aligned_cols=18 Identities=22% Similarity=0.632 Sum_probs=11.6
Q ss_pred CCCCcccCCCCCCCcccc
Q 018850 273 SCPICYEDLDYTDSSFLP 290 (349)
Q Consensus 273 ~CPIC~E~LDlTD~~F~P 290 (349)
.|--|--.|+.+++...|
T Consensus 5 ~C~rCg~~fs~~el~~lP 22 (48)
T 4ayb_P 5 RCGKCWKTFTDEQLKVLP 22 (48)
T ss_dssp CCCCTTTTCCCCCSCCCS
T ss_pred EeeccCCCccHHHHhhCC
Confidence 466666667766666555
No 106
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=30.30 E-value=19 Score=29.93 Aligned_cols=26 Identities=27% Similarity=0.861 Sum_probs=16.7
Q ss_pred CCceehHHHHhhhhhhcCCCCCCccccccCc
Q 018850 293 CGFRLCLFCHKRILEEDGRCPGCRKPYEHDQ 323 (349)
Q Consensus 293 CGyqiC~fC~~rI~e~dgrCPaCRr~Yde~~ 323 (349)
|||++ ..+ +....+||.|+..--+.+
T Consensus 73 CG~~F----~~~-~~kPsrCP~CkSe~Ie~P 98 (105)
T 2gmg_A 73 CGFVF----KAE-INIPSRCPKCKSEWIEEP 98 (105)
T ss_dssp TCCBC----CCC-SSCCSSCSSSCCCCBCCC
T ss_pred CcCee----ccc-CCCCCCCcCCCCCccCCc
Confidence 89985 111 124589999998665444
No 107
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=29.68 E-value=12 Score=30.09 Aligned_cols=32 Identities=28% Similarity=0.779 Sum_probs=18.9
Q ss_pred CCccccccCCceehHHHHhhhhh-h-cCCCCCCcc
Q 018850 285 DSSFLPCLCGFRLCLFCHKRILE-E-DGRCPGCRK 317 (349)
Q Consensus 285 D~~F~PC~CGyqiC~fC~~rI~e-~-dgrCPaCRr 317 (349)
+..++||+||-++-+. ...|.+ + -..||.|--
T Consensus 20 ~~y~ypCrCGd~F~It-eedLe~ge~iv~C~sCSL 53 (89)
T 2jr7_A 20 ETYFYPCPCGDNFSIT-KEDLENGEDVATCPSCSL 53 (89)
T ss_dssp TEEEEECTTSSEEEEE-HHHHHHTCCEEECTTTCC
T ss_pred CEEEEcCCCCCEEEEC-HHHHhCCCEEEECCCCcc
Confidence 3457999999985221 122222 1 257999964
No 108
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=29.39 E-value=11 Score=28.86 Aligned_cols=30 Identities=23% Similarity=0.452 Sum_probs=20.7
Q ss_pred CCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCccccc
Q 018850 271 PSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYE 320 (349)
Q Consensus 271 ~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yd 320 (349)
...||.|..+|.+.... ..-.||+|++.|-
T Consensus 8 iL~CP~ck~~L~~~~~~--------------------~~LiC~~cg~~YP 37 (69)
T 2pk7_A 8 ILACPICKGPLKLSADK--------------------TELISKGAGLAYP 37 (69)
T ss_dssp TCCCTTTCCCCEECTTS--------------------SEEEETTTTEEEE
T ss_pred heeCCCCCCcCeEeCCC--------------------CEEEcCCCCcEec
Confidence 56899999888754321 1236899999885
No 109
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=26.85 E-value=10 Score=28.84 Aligned_cols=31 Identities=23% Similarity=0.209 Sum_probs=21.0
Q ss_pred CCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCccccc
Q 018850 270 APSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYE 320 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yd 320 (349)
....||+|..+|.+... +....||.|++.|-
T Consensus 9 eiL~CP~ck~~L~~~~~--------------------~g~LvC~~c~~~YP 39 (67)
T 2jny_A 9 EVLACPKDKGPLRYLES--------------------EQLLVNERLNLAYR 39 (67)
T ss_dssp CCCBCTTTCCBCEEETT--------------------TTEEEETTTTEEEE
T ss_pred HHhCCCCCCCcCeEeCC--------------------CCEEEcCCCCcccc
Confidence 35689999988765321 11235899999884
No 110
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=26.47 E-value=8.7 Score=29.41 Aligned_cols=31 Identities=19% Similarity=0.544 Sum_probs=21.1
Q ss_pred CCCCCCCcccCCCCCCCccccccCCceehHHHHhhhhhhcCCCCCCccccc
Q 018850 270 APSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYE 320 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~rI~e~dgrCPaCRr~Yd 320 (349)
....||.|..+|.+... +..-.||+|++.|-
T Consensus 7 ~iL~CP~ck~~L~~~~~--------------------~~~LiC~~cg~~YP 37 (70)
T 2js4_A 7 DILVCPVCKGRLEFQRA--------------------QAELVCNADRLAFP 37 (70)
T ss_dssp CCCBCTTTCCBEEEETT--------------------TTEEEETTTTEEEE
T ss_pred hheECCCCCCcCEEeCC--------------------CCEEEcCCCCceec
Confidence 35689999988765331 11236999999985
No 111
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.28 E-value=64 Score=24.51 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=28.2
Q ss_pred CCccccccCCCCCCCCCCcccCCCCCCCccccccCCceehHHHHhh
Q 018850 259 GVPWACNNVLAAPSSCPICYEDLDYTDSSFLPCLCGFRLCLFCHKR 304 (349)
Q Consensus 259 g~~w~~~~~~~~~~~CPIC~E~LDlTD~~F~PC~CGyqiC~fC~~r 304 (349)
...|+.... ...|.+|-..|.+.-+..-==.||.-+|-.|-.+
T Consensus 5 ~~~W~pd~~---~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 5 SSGRYPTNN---FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSCSCCC---CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCccccCCC---CCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 455765433 4578999988887655533334788888887543
No 112
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.46 E-value=36 Score=25.06 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=19.9
Q ss_pred ccccCCcchhccc--------cCc----cccHHHHHHHhh
Q 018850 136 GCCSGSITEEEEE--------DGC----LDDWEAVADALA 163 (349)
Q Consensus 136 ~~cSgsitEee~d--------Dgc----lDDWEAvADAL~ 163 (349)
..-.+.-|+|||+ -|. ..+|..||..|-
T Consensus 5 ~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~ 44 (75)
T 2yum_A 5 SSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG 44 (75)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC
Confidence 3345678999985 221 379999999984
No 113
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=25.14 E-value=43 Score=24.52 Aligned_cols=38 Identities=18% Similarity=0.554 Sum_probs=28.0
Q ss_pred CCCCCCCcccCCCCCC-Ccccccc---CCceehHHHHhhhhh
Q 018850 270 APSSCPICYEDLDYTD-SSFLPCL---CGFRLCLFCHKRILE 307 (349)
Q Consensus 270 ~~~~CPIC~E~LDlTD-~~F~PC~---CGyqiC~fC~~rI~e 307 (349)
....||-|--.+...+ -+..-|. |++++|-.|...+..
T Consensus 5 ~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 5 NTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred cceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 3468999987776655 4456687 999999888776654
No 114
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=24.83 E-value=21 Score=27.29 Aligned_cols=29 Identities=24% Similarity=0.623 Sum_probs=18.3
Q ss_pred CCCCcccCCCCC-CCcccccc-CCceehHHH
Q 018850 273 SCPICYEDLDYT-DSSFLPCL-CGFRLCLFC 301 (349)
Q Consensus 273 ~CPIC~E~LDlT-D~~F~PC~-CGyqiC~fC 301 (349)
.||-|-..+-.. +..-.-|+ |++.+|.-|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C 57 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRC 57 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSS
T ss_pred ECcCCCchheecCCCCceEeCCCCCcccccc
Confidence 488776544222 22335697 999998866
No 115
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.80 E-value=27 Score=25.52 Aligned_cols=29 Identities=28% Similarity=0.506 Sum_probs=20.8
Q ss_pred CCccccCCcchhccc--------cCccccHHHHHHHhh
Q 018850 134 GGGCCSGSITEEEEE--------DGCLDDWEAVADALA 163 (349)
Q Consensus 134 s~~~cSgsitEee~d--------DgclDDWEAvADAL~ 163 (349)
+...--+.-|+|||+ -| ..+|..||..|.
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G-~~~W~~Ia~~l~ 40 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYG-KNQWSRIASLLH 40 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTC-SSCHHHHHHHST
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHC-cCCHHHHHHHhc
Confidence 334456788999975 22 258999999885
No 116
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=23.66 E-value=11 Score=29.75 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=15.2
Q ss_pred cchhccc----------cCccccHHHHHHHhh
Q 018850 142 ITEEEEE----------DGCLDDWEAVADALA 163 (349)
Q Consensus 142 itEee~d----------DgclDDWEAvADAL~ 163 (349)
-|.||+. .+.-|-||.||.++-
T Consensus 23 WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp 54 (74)
T 4eef_G 23 WKFSENIAFEIALSFTNKDTPDRWKKVAQYVK 54 (74)
T ss_dssp CCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC
T ss_pred CCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC
Confidence 4777763 556677888887773
No 117
>2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens}
Probab=21.24 E-value=26 Score=23.00 Aligned_cols=7 Identities=43% Similarity=1.085 Sum_probs=5.3
Q ss_pred hhHhhhh
Q 018850 43 EQWLSQV 49 (349)
Q Consensus 43 EQWLSQv 49 (349)
||||+|-
T Consensus 19 ~qw~s~d 25 (28)
T 2b3g_B 19 EQWFTED 25 (28)
T ss_dssp HHHHHC-
T ss_pred HHHhhcC
Confidence 6999984
Done!