BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018851
         (349 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3L4G|A Chain A, Crystal Structure Of Homo Sapiens Cytoplasmic
           Phenylalanyl-T Synthetase
 pdb|3L4G|C Chain C, Crystal Structure Of Homo Sapiens Cytoplasmic
           Phenylalanyl-T Synthetase
 pdb|3L4G|E Chain E, Crystal Structure Of Homo Sapiens Cytoplasmic
           Phenylalanyl-T Synthetase
 pdb|3L4G|G Chain G, Crystal Structure Of Homo Sapiens Cytoplasmic
           Phenylalanyl-T Synthetase
 pdb|3L4G|I Chain I, Crystal Structure Of Homo Sapiens Cytoplasmic
           Phenylalanyl-T Synthetase
 pdb|3L4G|K Chain K, Crystal Structure Of Homo Sapiens Cytoplasmic
           Phenylalanyl-T Synthetase
 pdb|3L4G|M Chain M, Crystal Structure Of Homo Sapiens Cytoplasmic
           Phenylalanyl-T Synthetase
 pdb|3L4G|O Chain O, Crystal Structure Of Homo Sapiens Cytoplasmic
           Phenylalanyl-T Synthetase
          Length = 508

 Score =  289 bits (740), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 163/348 (46%), Positives = 216/348 (62%), Gaps = 14/348 (4%)

Query: 4   EAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGF-RYIDAQDIKRETWVLTGEG 62
           E +L  LE ++   DS   AAE G +H  VV  +KSL      I+A+    + W LT EG
Sbjct: 8   ELLLRRLEASDGGLDSAELAAELGMEHQAVVGAVKSLQALGEVIEAELRSTKHWELTAEG 67

Query: 63  KKYAAEGSPEVQLFLAVPAEGSISKDELQKKLDPAVFKIGCSQAGKNKWVEM------GK 116
           ++ A EGS E ++F ++P EG +++ EL +   P+  K+G S+A  NKW+ +      G 
Sbjct: 68  EEIAREGSHEARVFRSIPPEG-LAQSELMRL--PSG-KVGFSKAMSNKWIRVDKSAADGP 123

Query: 117 QVSRKVQNVEDKVKDLLLQVQNGHA--LSKEEISSLKARKLIVPQTWKGYSVRKGPNYAP 174
           +V R V ++ED+V+  L  V+ G A  L ++E S L+ RKL+   T K Y V KG  ++ 
Sbjct: 124 RVFRVVDSMEDEVQRRLQLVRGGQAEKLGEKERSELRKRKLLAEVTLKTYWVSKGSAFST 183

Query: 175 KRKKAATDLTRENLQKGDWKELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGF 234
              K  T+L+ E +  G W++  FK YNF A G   + GHLHPLLKVR Q + IFL+MGF
Sbjct: 184 SISKQETELSPEMISSGSWRDRPFKPYNFLAHGVLPDSGHLHPLLKVRSQFRQIFLEMGF 243

Query: 235 EEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHEXX 294
            EMPT+NF+ESSFWNFDALFQPQQHPARD HDTFFL +P+   +LP DYV+RVKR H   
Sbjct: 244 TEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQG 303

Query: 295 XXXXXXXXXEWKREEANKNLLRTHTTAVSSRMLKALAE-KPFAPKKVF 341
                     WK +EA KNLLRTHTT+ S+R L  LA+ KPF P K F
Sbjct: 304 GYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYF 351


>pdb|1PYS|A Chain A, Phenylalanyl-Trna Synthetase From Thermus Thermophilus
 pdb|1B7Y|A Chain A, Phenylalanyl Trna Synthetase Complexed With
           Phenylalaninyl-Adenylate
 pdb|1EIY|A Chain A, The Crystal Structure Of Phenylalanyl-Trna Synthetase From
           Thermus Thermophilus Complexed With Cognate Trnaphe
 pdb|1B70|A Chain A, Phenylalanyl Trna Synthetase Complexed With Phenylalanine
 pdb|1JJC|A Chain A, Crystal Structure At 2.6a Resolution Of Phenylalanyl-trna
           Synthetase Complexed With Phenylalanyl-adenylate In The
           Presence Of Manganese
 pdb|2IY5|A Chain A, Phenylalanyl-Trna Synthetase From Thermus Thermophilus
           Complexed With Trna And A Phenylalanyl-Adenylate Analog
 pdb|3HFZ|A Chain A, Crystal Structure Of Thermus Thermophilus
           Phenylalanyl-Trna Synthetase Comlexed With M-Tyrosine
 pdb|3TEH|A Chain A, Crystal Structure Of Thermus Thermophilus
           Phenylalanyl-Trna Synthetase Comlexed With L-Dopa
          Length = 350

 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 102/230 (44%), Gaps = 45/230 (19%)

Query: 129 VKDLLLQVQNGHALSKEEISSLKARKL----IVPQTWKGYSV-------RKGPNY-APKR 176
           +++ L  +QN   L  EE+ +LKAR L    ++ Q  KG S        ++G    A K 
Sbjct: 2   LEEALAAIQNARDL--EELKALKARYLGKKGLLTQEMKGLSALPLEERRKRGQELNAIKA 59

Query: 177 KKAATDLTREN-LQKGDWKE-LEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGF 234
              A    RE  L++   KE LE +  + +  G     G LHP+  + ++L +IF  +G+
Sbjct: 60  ALEAALEAREKALEEAALKEALERERVDVSLPGASLFSGGLHPITLMERELVEIFRALGY 119

Query: 235 EEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHEXX 294
           + +     VES F+NFDAL  P+ HPARD  DTF+L       E P              
Sbjct: 120 QAVEGPE-VESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGP-------------- 164

Query: 295 XXXXXXXXXEWKREEANKNLLRTHTTAVSSRMLKALAEKPF---APKKVF 341
                        E   + LLRTHT+ +  R + A    PF    P +VF
Sbjct: 165 ----------LGEEVEGRLLLRTHTSPMQVRYMVA-HTPPFRIVVPGRVF 203


>pdb|2AKW|A Chain A, Crystal Structure Of T.thermophilus Phenylalanyl-trna
           Synthetase Complexed With P-cl-phenylalanine
 pdb|2ALY|A Chain A, Crystal Structure Of T.Thermophilus Phenylalanyl-Trna
           Synthetase Complexed With
           5'-O-[n-(L-Tyrosyl)sulphamoyl]adenosine
 pdb|2AMC|A Chain A, Crystal Structure Of Phenylalanyl-Trna Synthetase
           Complexed With L- Tyrosine
          Length = 266

 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 60/132 (45%), Gaps = 29/132 (21%)

Query: 213 GHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEE 272
           G LHP+  + ++L +IF  +G++ +     VES F+NFDAL  P+ HPARD  DTF+L  
Sbjct: 14  GGLHPITLMERELVEIFRALGYQAVEGPE-VESEFFNFDALNIPEHHPARDMWDTFWLTG 72

Query: 273 PSTTRELPEDYVERVKRVHEXXXXXXXXXXXEWKREEANKNLLRTHTTAVSSRMLKALAE 332
                E P                           E   + LLRTHT+ +  R + A   
Sbjct: 73  EGFRLEGP------------------------LGEEVEGRLLLRTHTSPMQVRYMVA-HT 107

Query: 333 KPF---APKKVF 341
            PF    P +VF
Sbjct: 108 PPFRIVVPGRVF 119


>pdb|2RHQ|A Chain A, Phers From Staphylococcus Haemolyticus- Rational Protein
           Engineering And Inhibitor Studies
 pdb|2RHS|A Chain A, Phers From Staphylococcus Haemolyticus- Rational Protein
           Engineering And Inhibitor Studies
 pdb|2RHS|C Chain C, Phers From Staphylococcus Haemolyticus- Rational Protein
           Engineering And Inhibitor Studies
          Length = 294

 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 213 GHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEE 272
           G  HPL +  ++++D+FL +G+E +     VE  ++NF+AL  P+ HPARD  D+F++ +
Sbjct: 50  GSKHPLTRTVEEIEDLFLGLGYEIVDGYE-VEQDYYNFEALNLPKSHPARDMQDSFYITD 108

Query: 273 PSTTR 277
               R
Sbjct: 109 EILMR 113


>pdb|3PCO|A Chain A, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
           Complexed With Phenylalanine And Amp
 pdb|3PCO|C Chain C, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
           Complexed With Phenylalanine And Amp
          Length = 327

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 4/73 (5%)

Query: 207 GQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHD 266
           G+  E G LHP+ +   +++  F ++GF  + T   +E  + NFDAL  P  HPAR  HD
Sbjct: 98  GRRIENGGLHPVTRTIDRIESFFGELGFT-VATGPEIEDDYHNFDALNIPGHHPARADHD 156

Query: 267 TFFLEEPSTTREL 279
           TF+ +   TTR L
Sbjct: 157 TFWFD---TTRLL 166


>pdb|3CMQ|A Chain A, Crystal Structure Of Human Mitochondrial Phenylalanine
           Trna Synthetase
 pdb|3HFV|A Chain A, Crystal Structure Of Human Mitochondrial Phenylalanyl-Trna
           Synthetase Complexed With M-Tyrosine
 pdb|3TEG|A Chain A, Bacterial And Eukaryotic Phenylalanyl-Trna Synthetases
           Catalyze Misaminoacylation Of Trnaphe With
           3,4-Dihydroxy-L-Phenylalanine (L- Dopa)
 pdb|3TUP|A Chain A, Crystal Structure Of Human Mitochondrial Phers Complexed
           With Trnaphe In The Active Open State
          Length = 415

 Score = 33.5 bits (75), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 8/70 (11%)

Query: 216 HPLLKVRKQLKDIFLQMGFEEMPTNNF--------VESSFWNFDALFQPQQHPARDSHDT 267
           HPL  +++++K+ F +       T  F        V +++ NFD+L  P  HP+R   D 
Sbjct: 48  HPLWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDN 107

Query: 268 FFLEEPSTTR 277
           ++L      R
Sbjct: 108 YYLNRTHMLR 117


>pdb|4FHG|A Chain A, Spore Photoproduct Lyase C140s Mutant
          Length = 368

 Score = 30.0 bits (66), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)

Query: 45  YIDAQDIKRETWVLTGEGKKYAAEGSPEVQLFLAVPAEGSISKDELQKKLDPAVFKIGCS 104
           Y++  DI         + +KY  E +PE+  F A      +  D L   L  A+  IG +
Sbjct: 139 YVNLDDI-------FAQAQKYINERAPEITRFEAASTSDIVGIDHLTHSLKKAIEFIGAT 191

Query: 105 QAGKNKWV 112
             G+ ++V
Sbjct: 192 DYGRLRFV 199


>pdb|1O7D|A Chain A, The Structure Of The Bovine Lysosomal A-Mannosidase
           Suggests A Novel Mechanism For Low Ph Activation
          Length = 298

 Score = 30.0 bits (66), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 196 LEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGFE 235
           L F E  F + G+P    H+ P    R+Q   +F QMGF+
Sbjct: 127 LRFLEETFGSDGRPRVAWHIDPFGHSREQ-ASLFAQMGFD 165


>pdb|4FHE|A Chain A, Spore Photoproduct Lyase C140a Mutant
 pdb|4FHF|A Chain A, Spore Photoproduct Lyase C140a Mutant With Dinucleoside
           Spore Photoproduct
          Length = 368

 Score = 30.0 bits (66), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)

Query: 45  YIDAQDIKRETWVLTGEGKKYAAEGSPEVQLFLAVPAEGSISKDELQKKLDPAVFKIGCS 104
           Y++  DI         + +KY  E +PE+  F A      +  D L   L  A+  IG +
Sbjct: 139 YVNLDDI-------FAQAQKYINERAPEITRFEAAATSDIVGIDHLTHSLKKAIEFIGAT 191

Query: 105 QAGKNKWV 112
             G+ ++V
Sbjct: 192 DYGRLRFV 199


>pdb|4FHC|A Chain A, Spore Photoproduct Lyase
 pdb|4FHD|A Chain A, Spore Photoproduct Lyase Complexed With Dinucleoside Spore
           Photoproduct
          Length = 368

 Score = 29.6 bits (65), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)

Query: 45  YIDAQDIKRETWVLTGEGKKYAAEGSPEVQLFLAVPAEGSISKDELQKKLDPAVFKIGCS 104
           Y++  DI         + +KY  E +PE+  F A      +  D L   L  A+  IG +
Sbjct: 139 YVNLDDI-------FAQAQKYINERAPEITRFEAACTSDIVGIDHLTHSLKKAIEFIGAT 191

Query: 105 QAGKNKWV 112
             G+ ++V
Sbjct: 192 DYGRLRFV 199


>pdb|2DU7|A Chain A, Crystal Structure Of Methanococcus Jannacshii
           O-Phosphoseryl-Trna Synthetase
 pdb|2DU7|B Chain B, Crystal Structure Of Methanococcus Jannacshii
           O-Phosphoseryl-Trna Synthetase
 pdb|2DU7|C Chain C, Crystal Structure Of Methanococcus Jannacshii
           O-Phosphoseryl-Trna Synthetase
 pdb|2DU7|D Chain D, Crystal Structure Of Methanococcus Jannacshii
           O-Phosphoseryl-Trna Synthetase
          Length = 549

 Score = 29.6 bits (65), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 19/25 (76%)

Query: 213 GHLHPLLKVRKQLKDIFLQMGFEEM 237
           G  HP+++  ++L+  +L+MGFEEM
Sbjct: 54  GKPHPVMETIERLRQAYLRMGFEEM 78


>pdb|3E6M|A Chain A, The Crystal Structure Of A Marr Family Transcriptional
           Regulator From Silicibacter Pomeroyi Dss.
 pdb|3E6M|B Chain B, The Crystal Structure Of A Marr Family Transcriptional
           Regulator From Silicibacter Pomeroyi Dss.
 pdb|3E6M|C Chain C, The Crystal Structure Of A Marr Family Transcriptional
           Regulator From Silicibacter Pomeroyi Dss.
 pdb|3E6M|D Chain D, The Crystal Structure Of A Marr Family Transcriptional
           Regulator From Silicibacter Pomeroyi Dss.
 pdb|3E6M|E Chain E, The Crystal Structure Of A Marr Family Transcriptional
           Regulator From Silicibacter Pomeroyi Dss.
 pdb|3E6M|F Chain F, The Crystal Structure Of A Marr Family Transcriptional
           Regulator From Silicibacter Pomeroyi Dss.
 pdb|3E6M|G Chain G, The Crystal Structure Of A Marr Family Transcriptional
           Regulator From Silicibacter Pomeroyi Dss.
 pdb|3E6M|H Chain H, The Crystal Structure Of A Marr Family Transcriptional
           Regulator From Silicibacter Pomeroyi Dss
          Length = 161

 Score = 28.9 bits (63), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 44  RYIDAQDIKRETWVLTGEGKKYAAEGSPEVQLFLAVPAEGSISKDELQKKLD 95
           R I   D ++ T VLT +GKK  AE SP +  F A    G++  D+LQ  ++
Sbjct: 99  RSISDADQRKRTVVLTRKGKKKLAEISPLINDFHA-ELVGNVDPDKLQTCIE 149


>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
           Rat Brain
 pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
           Rat Brain
          Length = 567

 Score = 28.1 bits (61), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 235 EEMPTNNFVESSFWNFDALFQPQQHPARDS 264
           + + T NF   S W++ +   PQ HP  DS
Sbjct: 168 DSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197


>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
           Geranylgeranyl Transferase And Isoprenoid
          Length = 567

 Score = 28.1 bits (61), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 235 EEMPTNNFVESSFWNFDALFQPQQHPARDS 264
           + + T NF   S W++ +   PQ HP  DS
Sbjct: 168 DSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197


>pdb|3C72|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
           Inhibitor
          Length = 334

 Score = 28.1 bits (61), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 235 EEMPTNNFVESSFWNFDALFQPQQHPARDS 264
           + + T NF   S W++ +   PQ HP  DS
Sbjct: 172 DSLITRNFSNYSSWHYRSCLLPQLHPQPDS 201


>pdb|3PZ1|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
           Complex With Bms3
 pdb|3PZ2|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
           Complex With Bms3 And Lipid Substrate Ggpp
 pdb|3PZ3|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
           Complex With Bms-Analogue 14
          Length = 332

 Score = 27.7 bits (60), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 235 EEMPTNNFVESSFWNFDALFQPQQHPARDS 264
           + + T NF   S W++ +   PQ HP  DS
Sbjct: 170 DSLITRNFSNYSSWHYRSCLLPQLHPQPDS 199


>pdb|3DSS|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)
 pdb|3DST|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
           Complex With Geranylgeranyl Pyrophosphate
 pdb|3DSU|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
           Complex With Farnesyl Pyrophosphate
 pdb|3DSV|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
           Complex With Mono-Prenylated Peptide Ser-Cys-Ser-Cys(Gg)
           Derivated From Rab7
 pdb|3DSW|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
           Complex With Mono-Prenylated Peptide Ser-Cys(Gg)-Ser-Cys
           Derivated From Rab7
 pdb|3DSX|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
           Complex With Di-Prenylated Peptide
           Ser-Cys(Gg)-Ser-Cys(Gg) Derivated From Rab7
 pdb|3HXB|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
           Inhibitor (Compound 6)
 pdb|3HXC|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
           Inhibitor (compound 8)
 pdb|3HXD|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
           Inhibitor (Compound 9)
 pdb|3HXE|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
           Inhibitor (compound 37)
 pdb|3HXF|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
           Inhibitor (compound 32)
          Length = 331

 Score = 27.7 bits (60), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 235 EEMPTNNFVESSFWNFDALFQPQQHPARDS 264
           + + T NF   S W++ +   PQ HP  DS
Sbjct: 169 DSLITRNFSNYSSWHYRSCLLPQLHPQPDS 198


>pdb|4EHM|A Chain A, Rabggtase In Complex With Covalently Bound Psoromic Acid
 pdb|4GTS|A Chain A, Engineered Rabggtase In Complex With Bms Analogue 16
 pdb|4GTT|A Chain A, Engineered Rabggtase In Complex With Bms Analogue 12
 pdb|4GTV|A Chain A, Engineered Rabggtase In Complex With Bms Analogue 13
          Length = 330

 Score = 27.7 bits (60), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 235 EEMPTNNFVESSFWNFDALFQPQQHPARDS 264
           + + T NF   S W++ +   PQ HP  DS
Sbjct: 168 DSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.132    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,548,480
Number of Sequences: 62578
Number of extensions: 436856
Number of successful extensions: 1148
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1121
Number of HSP's gapped (non-prelim): 26
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 52 (24.6 bits)