Query 018851
Match_columns 349
No_of_seqs 159 out of 1285
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 07:02:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018851.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018851hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l4g_A Phenylalanyl-tRNA synth 100.0 1.6E-90 5.4E-95 706.6 16.2 344 1-349 5-359 (508)
2 2odr_B Phosphoseryl-tRNA synth 100.0 4.1E-36 1.4E-40 310.3 1.4 161 177-349 23-236 (648)
3 2odr_D Phosphoseryl-tRNA synth 100.0 5.4E-36 1.8E-40 310.1 0.3 161 177-349 23-236 (685)
4 2odr_A Phosphoseryl-tRNA synth 100.0 4.8E-36 1.6E-40 310.1 -0.8 161 177-349 23-236 (665)
5 2odr_C Phosphoseryl-tRNA synth 100.0 6.8E-36 2.3E-40 310.0 -0.4 161 177-349 23-236 (701)
6 2du7_A O-phosphoseryl-tRNA syn 100.0 6.9E-35 2.3E-39 298.8 3.3 161 177-349 15-229 (549)
7 3cmq_A Phenylalanyl-tRNA synth 100.0 3E-30 1E-34 258.5 7.8 125 178-349 12-144 (415)
8 3pco_A Phenylalanyl-tRNA synth 99.9 1.1E-27 3.9E-32 233.0 4.9 106 200-349 91-196 (327)
9 1b7y_A Phers, protein (phenyla 99.9 6.6E-26 2.2E-30 222.5 11.1 120 201-349 86-205 (350)
10 2du3_A O-phosphoseryl-tRNA syn 99.8 5.5E-23 1.9E-27 210.7 -4.1 164 177-349 5-217 (534)
11 2rhq_A Phenylalanyl-tRNA synth 99.8 7.7E-21 2.6E-25 182.1 10.0 108 200-349 37-144 (294)
12 3l4g_B Phenylalanyl-tRNA synth 99.1 2E-10 6.9E-15 119.4 9.9 104 204-349 380-483 (589)
13 2rhq_B Phenylalanyl-tRNA synth 99.1 3.7E-10 1.3E-14 121.2 10.6 103 204-349 480-583 (795)
14 3qtc_A Pyrrolysyl-tRNA synthet 99.0 3.6E-10 1.2E-14 107.5 8.9 96 211-349 72-167 (290)
15 3dsq_A Pyrrolysyl-tRNA synthet 99.0 8.1E-10 2.8E-14 105.5 9.1 95 211-349 66-161 (288)
16 1b7y_B Phers, protein (phenyla 98.7 2.5E-08 8.5E-13 106.9 7.4 91 214-348 487-578 (785)
17 3ig2_A Phenylalanyl-tRNA synth 98.2 1.4E-06 4.9E-11 79.1 6.4 90 218-349 6-95 (213)
18 3ica_A Phenylalanyl-tRNA synth 98.1 6.1E-06 2.1E-10 75.0 7.4 90 218-349 6-95 (213)
19 2xvc_A ESCRT-III, SSO0910; cel 97.9 1.7E-05 5.7E-10 58.1 5.1 48 2-49 11-58 (59)
20 1nnh_A Asparaginyl-tRNA synthe 97.8 2.3E-05 8E-10 74.7 7.0 41 218-266 18-63 (294)
21 2nnn_A Probable transcriptiona 97.8 0.00011 3.6E-09 60.1 9.1 71 2-73 39-113 (140)
22 1tbx_A ORF F-93, hypothetical 97.8 9E-05 3.1E-09 58.2 8.1 69 2-71 9-82 (99)
23 3bdd_A Regulatory protein MARR 97.7 0.00015 5E-09 59.4 9.5 72 2-74 32-108 (142)
24 1x54_A Asparaginyl-tRNA synthe 97.7 1.9E-05 6.6E-10 79.2 4.9 80 213-349 133-212 (434)
25 1bja_A Transcription regulator 97.7 6.3E-05 2.2E-09 60.7 6.3 68 2-73 17-85 (95)
26 3bpv_A Transcriptional regulat 97.7 0.00022 7.6E-09 58.1 9.6 71 2-73 30-104 (138)
27 3fm5_A Transcriptional regulat 97.7 9.8E-05 3.3E-09 61.6 7.4 73 2-74 40-116 (150)
28 2fbh_A Transcriptional regulat 97.6 0.00016 5.5E-09 59.4 8.4 71 2-73 38-113 (146)
29 1xmk_A Double-stranded RNA-spe 97.6 6.2E-05 2.1E-09 58.7 5.3 64 2-66 12-76 (79)
30 3hsr_A HTH-type transcriptiona 97.6 0.00011 3.8E-09 60.8 7.2 87 2-92 37-127 (140)
31 3bro_A Transcriptional regulat 97.6 0.00016 5.5E-09 59.2 8.0 72 2-73 35-111 (141)
32 3oop_A LIN2960 protein; protei 97.6 0.00012 4.2E-09 60.4 7.2 72 2-74 38-113 (143)
33 2gxg_A 146AA long hypothetical 97.6 0.00025 8.5E-09 58.4 8.8 70 2-73 38-111 (146)
34 2pex_A Transcriptional regulat 97.6 0.00027 9.4E-09 58.9 9.1 87 2-92 48-138 (153)
35 1jgs_A Multiple antibiotic res 97.6 0.00014 4.6E-09 59.5 7.0 70 3-73 36-109 (138)
36 2bv6_A MGRA, HTH-type transcri 97.6 0.00014 4.8E-09 59.9 7.0 86 3-92 39-128 (142)
37 3k0l_A Repressor protein; heli 97.6 0.00022 7.4E-09 60.5 8.4 71 2-73 47-121 (162)
38 3eco_A MEPR; mutlidrug efflux 97.6 0.00023 8E-09 58.3 8.3 72 2-73 32-108 (139)
39 3s2w_A Transcriptional regulat 97.6 0.00016 5.6E-09 61.0 7.5 70 3-73 52-125 (159)
40 2rdp_A Putative transcriptiona 97.6 0.00021 7.2E-09 59.2 8.0 71 2-73 43-117 (150)
41 2fbi_A Probable transcriptiona 97.6 0.00016 5.6E-09 59.1 7.2 70 2-72 37-110 (142)
42 1lj9_A Transcriptional regulat 97.6 0.00023 7.8E-09 58.6 8.1 71 2-73 30-104 (144)
43 2a61_A Transcriptional regulat 97.6 0.00023 7.7E-09 58.6 8.0 70 2-72 34-107 (145)
44 3b73_A PHIH1 repressor-like pr 97.6 8.8E-05 3E-09 61.3 5.4 64 2-68 14-79 (111)
45 3f3x_A Transcriptional regulat 97.5 0.00019 6.6E-09 59.3 7.6 70 2-73 38-111 (144)
46 2eth_A Transcriptional regulat 97.5 0.00024 8.2E-09 59.6 8.2 71 2-73 45-119 (154)
47 4aik_A Transcriptional regulat 97.5 0.00032 1.1E-08 59.6 9.0 88 3-92 33-125 (151)
48 3cjn_A Transcriptional regulat 97.5 0.00024 8.3E-09 59.8 8.1 71 2-73 53-127 (162)
49 3nrv_A Putative transcriptiona 97.5 0.00015 5.2E-09 60.1 6.5 70 2-72 41-114 (148)
50 2hr3_A Probable transcriptiona 97.5 0.00027 9.1E-09 58.4 7.9 71 2-73 36-111 (147)
51 1ub9_A Hypothetical protein PH 97.5 0.00021 7E-09 55.5 6.8 65 3-68 18-86 (100)
52 2qvo_A Uncharacterized protein 97.5 0.00012 4.1E-09 57.5 5.4 69 3-71 14-86 (95)
53 3ech_A MEXR, multidrug resista 97.5 0.00014 4.8E-09 60.1 6.0 70 2-72 38-111 (142)
54 3g3z_A NMB1585, transcriptiona 97.5 0.0001 3.5E-09 61.0 4.9 72 2-74 32-107 (145)
55 3bj6_A Transcriptional regulat 97.5 0.00023 8E-09 59.1 7.1 71 2-73 41-115 (152)
56 2fa5_A Transcriptional regulat 97.5 0.0002 6.8E-09 60.3 6.7 72 2-74 50-125 (162)
57 2qww_A Transcriptional regulat 97.5 0.00013 4.6E-09 60.8 5.6 70 2-72 42-117 (154)
58 3kp7_A Transcriptional regulat 97.5 0.00014 4.9E-09 60.7 5.7 86 2-91 39-131 (151)
59 2x4h_A Hypothetical protein SS 97.5 0.00028 9.7E-09 58.3 7.4 72 3-77 15-89 (139)
60 2pg4_A Uncharacterized protein 97.4 0.00025 8.6E-09 55.5 6.6 70 5-74 19-91 (95)
61 3bja_A Transcriptional regulat 97.4 0.00022 7.4E-09 58.1 6.5 71 2-73 34-108 (139)
62 3e6m_A MARR family transcripti 97.4 0.00017 5.9E-09 61.1 6.0 72 2-74 54-129 (161)
63 3deu_A Transcriptional regulat 97.4 0.00028 9.6E-09 60.5 7.4 71 2-72 54-128 (166)
64 3tgn_A ADC operon repressor AD 97.4 0.00024 8.2E-09 58.6 6.6 67 2-70 39-109 (146)
65 1r7j_A Conserved hypothetical 97.4 0.00036 1.2E-08 55.7 7.3 61 2-68 9-69 (95)
66 4esf_A PADR-like transcription 97.4 0.00064 2.2E-08 56.1 8.5 66 2-69 12-89 (117)
67 4hbl_A Transcriptional regulat 97.4 0.00019 6.6E-09 59.9 5.5 71 2-73 42-116 (149)
68 1s3j_A YUSO protein; structura 97.4 0.00036 1.2E-08 58.1 6.9 70 3-73 39-112 (155)
69 3hhh_A Transcriptional regulat 97.4 0.00076 2.6E-08 55.7 8.7 69 2-72 14-94 (116)
70 3nqo_A MARR-family transcripti 97.3 0.00056 1.9E-08 59.9 8.4 88 2-92 42-136 (189)
71 3cdh_A Transcriptional regulat 97.3 0.00029 9.8E-09 59.0 6.1 70 2-72 44-117 (155)
72 3f8b_A Transcriptional regulat 97.3 0.0008 2.8E-08 55.3 8.4 71 2-74 13-97 (116)
73 1z91_A Organic hydroperoxide r 97.3 0.00031 1.1E-08 57.9 5.8 73 3-76 42-118 (147)
74 3jw4_A Transcriptional regulat 97.3 0.00013 4.4E-09 60.8 3.4 88 2-92 42-136 (148)
75 2hzt_A Putative HTH-type trans 97.3 0.00057 1.9E-08 54.9 7.1 61 4-66 17-82 (107)
76 2nyx_A Probable transcriptiona 97.3 0.00043 1.5E-08 59.2 6.7 70 2-72 46-119 (168)
77 3l7w_A Putative uncharacterize 97.3 0.00094 3.2E-08 54.0 8.2 71 2-74 10-89 (108)
78 1z7u_A Hypothetical protein EF 97.2 0.00097 3.3E-08 54.0 8.1 63 3-67 24-91 (112)
79 3df8_A Possible HXLR family tr 97.2 0.00083 2.9E-08 54.6 7.6 61 4-66 30-93 (111)
80 3u2r_A Regulatory protein MARR 97.2 0.00047 1.6E-08 58.7 6.3 70 2-71 47-121 (168)
81 1wyd_A Hypothetical aspartyl-t 97.2 0.00029 9.9E-09 70.6 5.6 49 213-272 132-180 (429)
82 4b8x_A SCO5413, possible MARR- 97.2 0.00075 2.6E-08 56.9 7.3 87 3-91 37-128 (147)
83 1sfx_A Conserved hypothetical 97.2 0.0011 3.6E-08 51.6 7.6 67 2-69 21-90 (109)
84 4esb_A Transcriptional regulat 97.2 0.00093 3.2E-08 55.0 7.4 70 2-73 10-91 (115)
85 2frh_A SARA, staphylococcal ac 97.2 0.0002 7E-09 58.9 3.2 69 2-71 38-112 (127)
86 1xma_A Predicted transcription 97.1 0.0015 5.1E-08 56.0 8.3 69 2-72 42-124 (145)
87 2fsw_A PG_0823 protein; alpha- 97.1 0.00099 3.4E-08 53.4 6.7 61 4-66 28-93 (107)
88 3cuo_A Uncharacterized HTH-typ 97.1 0.0013 4.6E-08 50.8 7.0 65 3-68 26-91 (99)
89 3boq_A Transcriptional regulat 97.1 0.00058 2E-08 57.2 5.2 71 2-73 48-123 (160)
90 3elk_A Putative transcriptiona 97.0 0.00086 2.9E-08 55.4 6.0 69 2-72 15-95 (117)
91 1z7m_A ATP phosphoribosyltrans 97.0 0.0011 3.6E-08 64.4 7.6 97 211-349 32-129 (344)
92 2obp_A Putative DNA-binding pr 97.0 0.00098 3.4E-08 53.7 6.1 70 2-71 17-93 (96)
93 2esh_A Conserved hypothetical 97.0 0.0011 3.7E-08 54.4 6.3 66 2-69 14-93 (118)
94 1n9w_A Aspartyl-tRNA synthetas 97.0 0.00031 1.1E-08 70.3 3.4 47 214-271 124-170 (422)
95 1okr_A MECI, methicillin resis 97.0 0.001 3.5E-08 53.8 5.8 67 2-69 11-83 (123)
96 1p4x_A Staphylococcal accessor 97.0 0.0016 5.4E-08 60.6 7.6 112 3-114 36-206 (250)
97 1yyv_A Putative transcriptiona 96.9 0.0016 5.5E-08 54.6 6.9 61 4-66 38-103 (131)
98 3ri2_A Transcriptional regulat 96.9 0.0024 8.1E-08 53.4 7.7 68 2-72 22-99 (123)
99 1yg2_A Gene activator APHA; vi 96.9 0.0017 6E-08 56.8 7.0 65 2-68 3-81 (179)
100 4fx0_A Probable transcriptiona 96.9 0.00084 2.9E-08 56.8 4.8 70 3-72 35-111 (148)
101 1on2_A Transcriptional regulat 96.9 0.0015 5E-08 54.2 6.2 61 6-69 13-73 (142)
102 2heo_A Z-DNA binding protein 1 96.9 0.0016 5.4E-08 48.5 5.5 55 3-59 12-66 (67)
103 2fxa_A Protease production reg 96.9 0.0012 4.2E-08 59.0 5.8 66 2-68 49-118 (207)
104 3hrs_A Metalloregulator SCAR; 96.9 0.0013 4.3E-08 59.5 5.9 61 16-78 20-80 (214)
105 2f2e_A PA1607; transcription f 96.8 0.0029 1E-07 53.8 7.4 61 4-66 27-90 (146)
106 2dql_A PEX protein; circadian 96.8 0.0042 1.5E-07 50.9 8.1 63 6-70 27-103 (115)
107 2oqg_A Possible transcriptiona 96.8 0.0041 1.4E-07 49.4 7.8 64 3-68 23-87 (114)
108 4a5n_A Uncharacterized HTH-typ 96.8 0.0033 1.1E-07 53.1 7.4 60 5-66 30-94 (131)
109 2wte_A CSA3; antiviral protein 96.8 0.002 6.8E-08 59.8 6.6 64 2-67 153-216 (244)
110 3rac_A Histidine-tRNA ligase; 96.8 0.0027 9.1E-08 62.3 7.8 97 211-349 33-129 (373)
111 1qbj_A Protein (double-strande 96.7 0.0022 7.6E-08 49.9 5.6 61 2-62 11-73 (81)
112 1y0u_A Arsenical resistance op 96.6 0.0026 8.8E-08 49.8 5.4 56 3-64 33-88 (96)
113 2fbk_A Transcriptional regulat 96.6 0.00048 1.6E-08 59.6 1.1 72 2-73 70-147 (181)
114 2co5_A Viral protein F93; vira 96.6 0.0028 9.6E-08 51.0 5.5 66 4-69 12-84 (99)
115 2p8t_A Hypothetical protein PH 96.6 0.004 1.4E-07 56.4 7.2 49 17-68 31-79 (200)
116 1qe0_A Histidyl-tRNA synthetas 96.6 0.0017 5.9E-08 63.7 5.2 94 215-349 16-113 (420)
117 1qgp_A Protein (double strande 96.6 0.0018 6E-08 49.8 4.1 58 2-60 15-75 (77)
118 2h09_A Transcriptional regulat 96.4 0.0057 1.9E-07 51.5 6.7 61 5-68 44-104 (155)
119 2lnb_A Z-DNA-binding protein 1 96.4 0.0032 1.1E-07 48.8 4.3 56 2-59 20-75 (80)
120 3jth_A Transcription activator 96.3 0.0058 2E-07 47.7 5.7 63 3-67 25-88 (98)
121 1p4x_A Staphylococcal accessor 96.3 0.0035 1.2E-07 58.2 5.0 71 2-72 159-234 (250)
122 3f6o_A Probable transcriptiona 96.3 0.0077 2.6E-07 49.0 6.4 69 3-73 20-89 (118)
123 1sd4_A Penicillinase repressor 96.2 0.024 8.2E-07 45.7 8.8 60 2-62 11-76 (126)
124 3lc0_A Histidyl-tRNA synthetas 96.2 0.009 3.1E-07 60.1 7.5 91 216-349 44-135 (456)
125 2kko_A Possible transcriptiona 96.1 0.01 3.5E-07 47.6 6.3 62 3-66 27-89 (108)
126 3f6v_A Possible transcriptiona 96.1 0.011 3.7E-07 50.7 6.8 64 3-68 60-124 (151)
127 3net_A Histidyl-tRNA synthetas 96.0 0.0055 1.9E-07 61.6 5.3 104 218-349 29-132 (465)
128 1oyi_A Double-stranded RNA-bin 96.0 0.0037 1.3E-07 49.0 3.1 59 3-63 19-77 (82)
129 2jsc_A Transcriptional regulat 96.0 0.018 6.1E-07 46.9 7.3 62 3-66 23-85 (118)
130 1u2w_A CADC repressor, cadmium 95.9 0.016 5.5E-07 47.5 6.7 63 3-66 44-107 (122)
131 3lmm_A Uncharacterized protein 95.9 0.011 3.7E-07 61.4 6.9 110 3-116 432-564 (583)
132 3od1_A ATP phosphoribosyltrans 95.9 0.0072 2.5E-07 59.8 5.3 89 218-349 27-115 (400)
133 1r1u_A CZRA, repressor protein 95.9 0.03 1E-06 44.4 8.1 60 3-64 28-88 (106)
134 1hsj_A Fusion protein consisti 95.9 0.005 1.7E-07 60.8 4.1 65 3-68 406-476 (487)
135 2htj_A P fimbrial regulatory p 95.8 0.014 4.7E-07 44.3 5.6 58 3-61 2-62 (81)
136 2qq9_A Diphtheria toxin repres 95.8 0.0088 3E-07 54.2 5.3 55 20-76 28-82 (226)
137 3l9f_A Putative uncharacterize 95.8 0.0097 3.3E-07 53.8 5.5 64 3-68 38-115 (204)
138 3pqk_A Biofilm growth-associat 95.8 0.01 3.4E-07 46.7 4.9 61 4-66 26-87 (102)
139 2e1n_A PEX, period extender; c 95.8 0.012 4.1E-07 50.0 5.5 63 5-69 38-114 (138)
140 1fx7_A Iron-dependent represso 95.8 0.011 3.6E-07 53.7 5.5 55 20-76 28-82 (230)
141 4g84_A Histidine--tRNA ligase, 95.8 0.015 5.2E-07 57.6 7.0 87 217-349 30-116 (464)
142 3u1d_A Uncharacterized protein 95.7 0.032 1.1E-06 48.4 7.9 66 3-68 31-107 (151)
143 2dk5_A DNA-directed RNA polyme 95.7 0.016 5.4E-07 45.9 5.5 46 2-48 21-68 (91)
144 2xzm_7 Plectin/S10 domain cont 95.6 0.011 3.7E-07 51.4 4.6 47 27-73 36-85 (162)
145 3u5c_K 40S ribosomal protein S 95.6 0.0095 3.2E-07 48.6 3.9 43 26-68 35-78 (105)
146 3cta_A Riboflavin kinase; stru 95.6 0.03 1E-06 50.5 7.7 69 3-71 9-83 (230)
147 4g85_A Histidine-tRNA ligase, 95.6 0.011 3.9E-07 59.9 5.3 87 217-349 83-169 (517)
148 2jt1_A PEFI protein; solution 95.4 0.018 6E-07 44.4 4.7 47 3-49 6-57 (77)
149 2d1h_A ST1889, 109AA long hypo 95.4 0.042 1.4E-06 42.4 7.0 62 4-66 24-93 (109)
150 1r1t_A Transcriptional repress 95.4 0.054 1.8E-06 44.5 7.9 60 3-64 48-108 (122)
151 2zfw_A PEX; five alpha-helices 95.4 0.0069 2.4E-07 52.2 2.5 63 5-69 48-124 (148)
152 2qlz_A Transcription factor PF 95.3 0.045 1.6E-06 50.3 8.2 112 3-117 14-214 (232)
153 1wu7_A Histidyl-tRNA synthetas 95.3 0.019 6.4E-07 56.8 5.9 89 216-349 21-111 (434)
154 1xn7_A Hypothetical protein YH 95.3 0.021 7.1E-07 44.1 4.9 45 4-49 5-49 (78)
155 1htt_A Histidyl-tRNA synthetas 95.2 0.018 6.1E-07 56.5 5.3 92 215-349 18-113 (423)
156 1ku9_A Hypothetical protein MJ 95.1 0.019 6.4E-07 46.8 4.3 65 3-68 28-95 (152)
157 2k02_A Ferrous iron transport 95.1 0.023 7.9E-07 44.9 4.6 46 4-50 5-50 (87)
158 1h4v_B Histidyl-tRNA synthetas 95.1 0.047 1.6E-06 53.5 7.8 95 214-349 16-113 (421)
159 3r0a_A Putative transcriptiona 94.9 0.048 1.6E-06 44.7 6.2 50 2-51 27-77 (123)
160 4a6d_A Hydroxyindole O-methylt 94.9 0.077 2.6E-06 50.8 8.6 72 2-73 29-101 (353)
161 2g9w_A Conserved hypothetical 94.8 0.043 1.5E-06 45.6 5.7 61 2-63 10-78 (138)
162 1sfu_A 34L protein; protein/Z- 94.7 0.045 1.6E-06 42.1 5.0 44 17-60 30-73 (75)
163 2lkp_A Transcriptional regulat 94.6 0.095 3.3E-06 42.0 7.3 56 3-60 34-90 (119)
164 2o0m_A Transcriptional regulat 94.6 0.006 2.1E-07 58.8 0.0 62 3-68 22-83 (345)
165 4e51_A Histidine--tRNA ligase; 94.5 0.017 5.9E-07 58.1 3.2 93 218-349 49-142 (467)
166 1p6r_A Penicillinase repressor 94.4 0.071 2.4E-06 40.1 5.7 56 2-58 10-70 (82)
167 2zkz_A Transcriptional repress 94.3 0.095 3.2E-06 41.2 6.5 62 3-66 29-91 (99)
168 2fu4_A Ferric uptake regulatio 94.3 0.091 3.1E-06 39.5 6.1 56 3-58 19-82 (83)
169 2vxz_A Pyrsv_GP04; viral prote 94.1 0.11 3.7E-06 45.1 6.7 60 4-67 14-74 (165)
170 2cfx_A HTH-type transcriptiona 94.0 0.086 2.9E-06 44.0 5.9 46 2-48 6-51 (144)
171 2p4w_A Transcriptional regulat 93.7 0.1 3.5E-06 46.8 6.2 61 3-65 17-83 (202)
172 2v79_A DNA replication protein 93.7 0.071 2.4E-06 45.0 4.8 47 17-63 52-104 (135)
173 1q1h_A TFE, transcription fact 93.7 0.081 2.8E-06 41.9 4.9 46 4-49 21-66 (110)
174 2w25_A Probable transcriptiona 93.6 0.11 3.6E-06 43.6 5.9 46 2-48 8-53 (150)
175 2dbb_A Putative HTH-type trans 93.6 0.084 2.9E-06 44.2 5.2 45 2-47 10-54 (151)
176 2cg4_A Regulatory protein ASNC 93.4 0.096 3.3E-06 43.9 5.2 46 2-48 9-54 (152)
177 2p5v_A Transcriptional regulat 93.4 0.12 4.2E-06 43.8 5.9 46 2-48 11-56 (162)
178 3pco_B Phenylalanyl-tRNA synth 93.3 0.062 2.1E-06 57.7 4.7 90 215-348 487-577 (795)
179 2vn2_A DNAD, chromosome replic 93.2 0.092 3.2E-06 43.5 4.7 51 3-53 34-88 (128)
180 3i4p_A Transcriptional regulat 93.2 0.091 3.1E-06 44.9 4.8 45 2-47 4-48 (162)
181 2ia0_A Putative HTH-type trans 93.2 0.13 4.5E-06 44.5 5.9 46 2-48 18-63 (171)
182 2pn6_A ST1022, 150AA long hypo 93.1 0.093 3.2E-06 43.8 4.7 46 2-48 4-49 (150)
183 1i1g_A Transcriptional regulat 92.9 0.1 3.5E-06 42.9 4.6 45 2-47 5-49 (141)
184 2y75_A HTH-type transcriptiona 92.9 0.12 4.3E-06 42.2 5.0 60 5-64 13-74 (129)
185 2i4l_A Proline-tRNA ligase; al 92.8 0.023 7.9E-07 56.9 0.5 92 215-349 67-161 (458)
186 2g7u_A Transcriptional regulat 92.4 0.27 9.3E-06 45.0 7.2 84 5-95 18-101 (257)
187 1mkm_A ICLR transcriptional re 92.4 0.19 6.6E-06 45.7 6.1 59 4-64 11-69 (249)
188 2cyy_A Putative HTH-type trans 92.1 0.14 4.8E-06 43.0 4.5 46 2-48 8-53 (151)
189 2e1c_A Putative HTH-type trans 92.1 0.17 5.9E-06 43.8 5.2 46 2-48 28-73 (171)
190 2xrn_A HTH-type transcriptiona 92.0 0.32 1.1E-05 44.1 7.1 85 4-95 9-93 (241)
191 2hgc_A YJCQ protein; SR346, st 91.7 0.14 4.9E-06 41.5 3.9 76 2-81 6-88 (102)
192 1bm9_A RTP, TER, replication t 91.5 0.23 8E-06 41.5 5.0 65 3-68 20-102 (122)
193 2k4b_A Transcriptional regulat 91.2 0.13 4.4E-06 41.2 3.0 48 3-51 37-88 (99)
194 3mcz_A O-methyltransferase; ad 91.0 0.32 1.1E-05 45.7 6.1 65 3-73 46-110 (352)
195 1x19_A CRTF-related protein; m 90.7 0.44 1.5E-05 45.1 6.9 64 3-71 53-116 (359)
196 2b0l_A GTP-sensing transcripti 90.6 0.17 5.7E-06 40.5 3.3 47 4-50 31-77 (102)
197 3a32_A Probable threonyl-tRNA 90.6 0.17 5.6E-06 50.8 3.9 91 217-349 51-145 (471)
198 3l09_A Putative transcriptiona 90.5 0.62 2.1E-05 43.7 7.5 56 20-77 49-105 (266)
199 2r3s_A Uncharacterized protein 90.4 0.32 1.1E-05 45.1 5.5 65 3-72 28-92 (335)
200 1usy_A ATP phosphoribosyltrans 90.3 0.47 1.6E-05 44.1 6.6 35 312-349 47-82 (275)
201 2o0y_A Transcriptional regulat 90.2 0.23 7.9E-06 45.6 4.3 58 5-64 27-84 (260)
202 1nyr_A Threonyl-tRNA synthetas 90.0 0.065 2.2E-06 55.9 0.3 91 218-349 274-366 (645)
203 3a5y_A GENX, putative lysyl-tR 89.8 0.47 1.6E-05 46.0 6.3 27 219-246 40-66 (345)
204 3dp7_A SAM-dependent methyltra 89.8 0.36 1.2E-05 46.1 5.4 67 3-73 37-103 (363)
205 3eyi_A Z-DNA-binding protein 1 89.6 0.15 5E-06 38.7 1.9 50 3-53 12-62 (72)
206 2dq3_A Seryl-tRNA synthetase; 89.2 0.097 3.3E-06 52.2 1.0 27 218-245 175-201 (425)
207 1hc7_A Prolyl-tRNA synthetase; 89.2 0.49 1.7E-05 47.7 6.1 95 218-349 47-143 (477)
208 3k2z_A LEXA repressor; winged 88.5 0.27 9.3E-06 43.1 3.3 58 3-60 7-68 (196)
209 2rkh_A Putative APHA-like tran 88.3 0.086 2.9E-06 46.7 -0.1 64 2-67 14-90 (180)
210 1uly_A Hypothetical protein PH 88.2 0.83 2.8E-05 40.4 6.2 46 2-49 21-66 (192)
211 2yu3_A DNA-directed RNA polyme 88.1 0.48 1.7E-05 37.8 4.2 49 2-51 38-88 (95)
212 3mq0_A Transcriptional repress 88.0 0.37 1.3E-05 44.8 4.0 58 4-63 33-90 (275)
213 3p9c_A Caffeic acid O-methyltr 87.7 0.9 3.1E-05 43.5 6.6 69 3-71 42-122 (364)
214 1ses_A Seryl-tRNA synthetase; 87.4 0.12 4.3E-06 51.3 0.4 27 218-245 169-195 (421)
215 1nj1_A PROR, proline-tRNA synt 87.3 0.22 7.5E-06 50.5 2.1 94 218-349 74-169 (501)
216 2o03_A Probable zinc uptake re 87.2 0.79 2.7E-05 37.7 5.1 55 4-58 14-75 (131)
217 2ia2_A Putative transcriptiona 87.1 0.39 1.3E-05 44.2 3.6 55 5-62 25-79 (265)
218 2l02_A Uncharacterized protein 86.9 2 6.8E-05 33.5 6.9 53 5-58 12-65 (82)
219 1j5y_A Transcriptional regulat 86.3 0.71 2.4E-05 40.2 4.7 56 3-61 23-79 (187)
220 1nj8_A Proline-tRNA synthetase 86.3 0.45 1.5E-05 47.6 3.8 95 218-349 41-137 (459)
221 2fe3_A Peroxide operon regulat 86.3 1.1 3.8E-05 37.5 5.7 56 4-59 25-87 (145)
222 3a74_A Lysyl-tRNA synthetase; 86.2 0.9 3.1E-05 46.1 5.9 26 220-246 179-204 (493)
223 1ylf_A RRF2 family protein; st 86.0 0.68 2.3E-05 39.0 4.2 59 5-64 18-77 (149)
224 2dq0_A Seryl-tRNA synthetase; 85.9 0.19 6.5E-06 50.6 0.7 27 218-245 196-222 (455)
225 2j3l_A Prolyl-tRNA synthetase; 85.8 1.1 3.7E-05 45.8 6.3 91 218-349 50-141 (572)
226 1zg3_A Isoflavanone 4'-O-methy 85.7 1.4 4.8E-05 41.6 6.7 68 3-71 32-110 (358)
227 4hvc_A Bifunctional glutamate/ 85.6 0.64 2.2E-05 47.5 4.5 96 218-349 64-160 (519)
228 3r4k_A Transcriptional regulat 85.4 0.44 1.5E-05 43.8 3.0 59 5-64 10-68 (260)
229 2ijl_A AGR_C_4647P, molybdenum 85.4 1.2 4.1E-05 37.5 5.4 62 4-68 29-95 (135)
230 3rkx_A Biotin-[acetyl-COA-carb 85.3 1.4 4.9E-05 42.0 6.6 58 2-60 4-62 (323)
231 4ham_A LMO2241 protein; struct 84.8 0.92 3.1E-05 37.4 4.4 39 18-56 40-78 (134)
232 1evl_A Threonyl-tRNA synthetas 84.2 0.58 2E-05 45.6 3.3 39 311-349 84-123 (401)
233 4g6q_A Putative uncharacterize 84.0 1.4 4.8E-05 38.4 5.4 59 4-64 26-91 (182)
234 1v4r_A Transcriptional repress 83.9 0.32 1.1E-05 38.1 1.1 35 18-52 37-71 (102)
235 3t8r_A Staphylococcus aureus C 83.9 0.96 3.3E-05 38.0 4.2 59 4-62 14-74 (143)
236 3tqn_A Transcriptional regulat 83.9 1.1 3.8E-05 35.9 4.4 36 18-53 35-70 (113)
237 1fp2_A Isoflavone O-methyltran 83.8 1.1 3.9E-05 42.2 5.1 68 3-71 38-108 (352)
238 2xig_A Ferric uptake regulatio 83.7 1.6 5.6E-05 36.8 5.6 56 4-59 30-92 (150)
239 3i53_A O-methyltransferase; CO 83.4 1.1 3.9E-05 41.7 4.9 63 3-69 27-89 (332)
240 1wle_A Seryl-tRNA synthetase; 83.4 1.4 4.8E-05 44.9 5.8 91 218-349 222-314 (501)
241 1mzb_A Ferric uptake regulatio 83.4 1.3 4.5E-05 36.6 4.8 56 4-59 21-84 (136)
242 2v9v_A Selenocysteine-specific 83.3 16 0.00054 29.3 11.3 112 3-120 4-127 (135)
243 1tw3_A COMT, carminomycin 4-O- 83.3 1.6 5.5E-05 41.0 5.9 64 3-71 41-104 (360)
244 2l01_A Uncharacterized protein 83.3 2.4 8.2E-05 32.6 5.7 54 5-59 14-69 (77)
245 2ip2_A Probable phenazine-spec 83.2 1.5 5E-05 40.8 5.5 63 3-71 30-92 (334)
246 2l02_A Uncharacterized protein 83.1 0.99 3.4E-05 35.2 3.5 43 74-116 12-56 (82)
247 3b02_A Transcriptional regulat 82.9 1.2 4E-05 37.8 4.4 54 17-72 140-193 (195)
248 3lwf_A LIN1550 protein, putati 82.9 2.2 7.6E-05 36.6 6.2 58 5-62 31-90 (159)
249 1sd4_A Penicillinase repressor 82.6 2.3 7.7E-05 33.7 5.8 47 70-116 10-62 (126)
250 1t6s_A Conserved hypothetical 82.2 11 0.00037 32.7 10.3 102 13-115 19-138 (162)
251 3neu_A LIN1836 protein; struct 82.0 1.5 5.1E-05 35.8 4.5 42 17-58 38-79 (125)
252 1fp1_D Isoliquiritigenin 2'-O- 81.9 1.3 4.3E-05 42.2 4.7 68 3-71 46-128 (372)
253 1bia_A BIRA bifunctional prote 81.9 1.5 5.2E-05 41.6 5.2 57 3-61 7-63 (321)
254 2gqq_A Leucine-responsive regu 81.8 0.29 1E-05 41.6 0.1 46 2-48 14-59 (163)
255 1eov_A ASPRS, aspartyl-tRNA sy 81.6 1.8 6.2E-05 43.8 5.8 25 220-245 183-207 (487)
256 3lst_A CALO1 methyltransferase 81.4 1 3.5E-05 42.5 3.8 60 4-68 45-104 (348)
257 1e1o_A Lysyl-tRNA synthetase, 80.6 1.9 6.6E-05 43.8 5.7 26 220-246 188-213 (504)
258 2l01_A Uncharacterized protein 80.5 1.4 4.7E-05 34.0 3.5 44 73-116 13-59 (77)
259 3mwm_A ZUR, putative metal upt 80.1 1.7 5.7E-05 36.2 4.2 57 4-60 17-80 (139)
260 3k69_A Putative transcription 79.7 1.1 3.8E-05 38.5 3.1 59 5-63 16-75 (162)
261 1z05_A Transcriptional regulat 79.4 2.8 9.7E-05 40.8 6.3 47 3-50 41-87 (429)
262 3by6_A Predicted transcription 79.4 1.6 5.5E-05 35.7 3.9 40 18-57 37-76 (126)
263 1qzz_A RDMB, aclacinomycin-10- 79.3 1.5 5.2E-05 41.3 4.2 66 3-71 38-103 (374)
264 2ek5_A Predicted transcription 79.3 2.3 7.9E-05 35.0 4.8 38 18-55 30-67 (129)
265 2w57_A Ferric uptake regulatio 79.3 1.8 6E-05 36.6 4.2 56 4-59 20-83 (150)
266 3pfi_A Holliday junction ATP-d 79.2 2.4 8.3E-05 39.2 5.5 70 3-76 265-336 (338)
267 1c0a_A Aspartyl tRNA synthetas 79.1 4.1 0.00014 42.1 7.6 24 220-244 143-166 (585)
268 4ev0_A Transcription regulator 79.0 3.4 0.00012 35.0 6.0 52 17-70 164-215 (216)
269 3f8m_A GNTR-family protein tra 78.8 2.9 0.0001 38.0 5.8 52 3-56 24-75 (248)
270 3uh0_A Threonyl-tRNA synthetas 78.8 1.3 4.5E-05 44.3 3.8 92 218-349 67-161 (460)
271 3hsr_A HTH-type transcriptiona 78.7 4.6 0.00016 32.4 6.4 46 70-115 36-83 (140)
272 3ial_A Prolyl-tRNA synthetase; 78.6 0.52 1.8E-05 48.2 0.7 94 218-349 58-154 (518)
273 2qlz_A Transcription factor PF 78.5 2.6 9E-05 38.5 5.4 55 4-62 168-222 (232)
274 1l0w_A Aspartyl-tRNA synthetas 78.0 3.7 0.00013 42.5 6.9 25 219-244 148-172 (580)
275 3err_A Fusion protein of micro 78.0 1.2 4.2E-05 45.6 3.3 26 218-244 278-303 (536)
276 3fzv_A Probable transcriptiona 78.0 1.3 4.3E-05 39.5 3.0 61 5-68 10-71 (306)
277 3szp_A Transcriptional regulat 77.8 2.1 7.1E-05 37.4 4.4 60 5-68 7-67 (291)
278 2esn_A Probable transcriptiona 77.8 1.9 6.6E-05 38.5 4.2 63 4-70 15-78 (310)
279 1stz_A Heat-inducible transcri 77.7 2.9 9.8E-05 40.2 5.7 61 3-65 19-86 (338)
280 4a0z_A Transcription factor FA 77.1 3.3 0.00011 36.5 5.5 43 3-46 14-56 (190)
281 1lva_A Selenocysteine-specific 76.9 35 0.0012 31.0 12.6 112 3-120 4-127 (258)
282 2zcw_A TTHA1359, transcription 76.4 4.3 0.00015 34.4 5.9 48 17-66 147-194 (202)
283 1z6r_A MLC protein; transcript 76.3 2.7 9.2E-05 40.5 5.1 46 3-49 18-63 (406)
284 3hhg_A Transcriptional regulat 76.1 1.4 4.9E-05 39.1 2.8 60 5-68 9-69 (306)
285 3dv8_A Transcriptional regulat 75.4 3.4 0.00012 35.2 5.0 34 17-50 170-203 (220)
286 3isp_A HTH-type transcriptiona 75.1 2 7E-05 38.3 3.6 61 5-70 12-73 (303)
287 3c7j_A Transcriptional regulat 74.4 2.7 9.3E-05 37.8 4.3 37 17-53 50-86 (237)
288 3reo_A (ISO)eugenol O-methyltr 74.3 4.6 0.00016 38.5 6.1 69 3-71 43-124 (368)
289 1ixc_A CBNR, LYSR-type regulat 74.0 1.6 5.4E-05 38.6 2.6 60 5-68 7-67 (294)
290 4hbl_A Transcriptional regulat 74.0 7.3 0.00025 31.6 6.5 46 70-115 41-88 (149)
291 3kfw_X Uncharacterized protein 74.0 2.6 9E-05 38.9 4.1 67 5-76 8-78 (247)
292 3vbb_A Seryl-tRNA synthetase, 73.7 0.91 3.1E-05 46.5 1.0 97 218-349 204-303 (522)
293 3fxq_A LYSR type regulator of 73.7 2.1 7.2E-05 38.3 3.4 60 5-68 8-68 (305)
294 2z99_A Putative uncharacterize 73.6 18 0.00061 32.9 9.5 103 13-116 27-145 (219)
295 3ech_A MEXR, multidrug resista 73.5 5.8 0.0002 31.7 5.7 46 70-115 37-84 (142)
296 3k0l_A Repressor protein; heli 73.1 13 0.00043 30.6 7.8 46 70-115 46-93 (162)
297 3kp7_A Transcriptional regulat 73.0 9.4 0.00032 30.8 6.9 44 70-114 38-83 (151)
298 3e6c_C CPRK, cyclic nucleotide 72.9 3.5 0.00012 36.2 4.6 55 17-73 178-232 (250)
299 3eyy_A Putative iron uptake re 72.9 3.4 0.00012 34.5 4.2 55 4-59 22-83 (145)
300 2fbh_A Transcriptional regulat 72.3 18 0.00062 28.5 8.4 46 70-115 37-85 (146)
301 1qf6_A THRRS, threonyl-tRNA sy 71.4 1.9 6.4E-05 45.0 2.7 38 312-349 326-364 (642)
302 2dk8_A DNA-directed RNA polyme 71.4 8.6 0.00029 29.7 5.8 60 2-61 15-76 (81)
303 1okr_A MECI, methicillin resis 71.4 4.3 0.00015 31.9 4.3 47 70-116 10-62 (123)
304 1xd7_A YWNA; structural genomi 71.3 2.5 8.6E-05 35.2 3.0 53 5-59 13-65 (145)
305 1lva_A Selenocysteine-specific 71.1 47 0.0016 30.1 11.9 112 3-120 68-196 (258)
306 3la7_A Global nitrogen regulat 70.9 7.7 0.00026 34.0 6.3 35 17-51 194-228 (243)
307 1hqc_A RUVB; extended AAA-ATPa 70.9 6.5 0.00022 35.8 6.0 71 3-76 249-322 (324)
308 3oop_A LIN2960 protein; protei 70.7 8 0.00027 30.9 5.9 46 70-115 37-84 (143)
309 3bwg_A Uncharacterized HTH-typ 70.6 5.2 0.00018 36.0 5.2 42 15-56 28-69 (239)
310 1hw1_A FADR, fatty acid metabo 70.4 5.3 0.00018 35.3 5.2 39 18-56 33-71 (239)
311 1wi9_A Protein C20ORF116 homol 70.3 3.6 0.00012 31.2 3.4 43 5-48 11-53 (72)
312 2fmy_A COOA, carbon monoxide o 70.3 6.3 0.00022 33.7 5.5 45 17-63 168-213 (220)
313 3edp_A LIN2111 protein; APC883 68.8 4.6 0.00016 36.4 4.4 42 15-56 32-73 (236)
314 2hoe_A N-acetylglucosamine kin 68.8 5.4 0.00019 38.1 5.2 56 5-62 24-86 (380)
315 3e97_A Transcriptional regulat 68.2 6.1 0.00021 34.0 5.0 44 17-62 176-219 (231)
316 2wv0_A YVOA, HTH-type transcri 68.2 4.9 0.00017 36.3 4.5 42 15-56 33-74 (243)
317 3deu_A Transcriptional regulat 68.0 11 0.00037 31.4 6.4 46 70-115 53-101 (166)
318 3gwz_A MMCR; methyltransferase 67.3 2 7E-05 40.8 1.8 62 5-71 62-124 (369)
319 3tgn_A ADC operon repressor AD 67.1 18 0.00061 28.7 7.3 45 70-115 38-84 (146)
320 3sxy_A Transcriptional regulat 67.1 3.7 0.00013 36.0 3.4 40 17-56 36-75 (218)
321 3m4p_A Ehasnrs, asparaginyl-tR 67.0 6 0.0002 39.6 5.2 23 220-243 161-183 (456)
322 3bro_A Transcriptional regulat 67.0 14 0.00049 29.0 6.7 45 71-115 35-83 (141)
323 3nem_A Aspartyl-tRNA synthetas 66.9 11 0.00039 37.4 7.2 25 220-245 142-166 (438)
324 2hs5_A Putative transcriptiona 66.6 5.8 0.0002 35.6 4.6 40 17-56 52-91 (239)
325 3bpv_A Transcriptional regulat 66.5 15 0.00052 28.7 6.7 45 70-114 29-75 (138)
326 2di3_A Bacterial regulatory pr 66.2 4.1 0.00014 36.3 3.5 34 18-51 30-65 (239)
327 2gau_A Transcriptional regulat 65.8 6.8 0.00023 33.7 4.8 35 17-51 181-215 (232)
328 4ets_A Ferric uptake regulatio 65.6 9.5 0.00033 32.5 5.6 56 4-59 36-100 (162)
329 3jw4_A Transcriptional regulat 65.3 11 0.00036 30.4 5.6 46 70-115 41-90 (148)
330 2p5k_A Arginine repressor; DNA 65.0 15 0.00052 25.3 5.7 41 6-50 10-55 (64)
331 3ihu_A Transcriptional regulat 65.0 5.5 0.00019 35.0 4.1 40 17-56 40-79 (222)
332 3eet_A Putative GNTR-family tr 65.0 7.3 0.00025 35.9 5.1 43 14-56 51-93 (272)
333 2qm3_A Predicted methyltransfe 64.7 4.1 0.00014 38.9 3.4 59 4-69 46-104 (373)
334 2gxg_A 146AA long hypothetical 64.6 27 0.00094 27.5 8.0 45 70-115 37-83 (146)
335 2xgt_A Asparaginyl-tRNA synthe 64.5 10 0.00034 37.7 6.2 24 220-244 137-160 (435)
336 2nnn_A Probable transcriptiona 64.3 12 0.00041 29.4 5.7 45 71-115 39-85 (140)
337 3bja_A Transcriptional regulat 64.2 11 0.00038 29.5 5.5 44 71-114 34-79 (139)
338 3s2w_A Transcriptional regulat 63.8 7.6 0.00026 31.7 4.5 46 70-115 50-97 (159)
339 3lss_A Seryl-tRNA synthetase; 63.8 5.4 0.00019 40.4 4.2 25 219-244 212-236 (484)
340 3d0s_A Transcriptional regulat 63.6 7.9 0.00027 33.1 4.8 34 17-50 178-211 (227)
341 3nrv_A Putative transcriptiona 63.0 19 0.00063 28.7 6.7 46 70-115 40-87 (148)
342 1zyb_A Transcription regulator 61.8 7.4 0.00025 33.7 4.3 35 17-51 187-221 (232)
343 1lj9_A Transcriptional regulat 61.7 20 0.00067 28.4 6.6 46 70-115 29-76 (144)
344 3e6m_A MARR family transcripti 61.7 8.6 0.00029 31.6 4.5 46 70-115 53-100 (161)
345 4ex5_A Lysine--tRNA ligase; st 61.4 12 0.00041 38.3 6.3 25 220-245 209-233 (529)
346 2qc0_A Uncharacterized protein 61.3 5.4 0.00019 38.6 3.6 67 4-71 300-366 (373)
347 1b9m_A Protein (mode); DNA-bin 61.3 11 0.00036 33.8 5.4 61 4-68 25-91 (265)
348 3eco_A MEPR; mutlidrug efflux 61.1 12 0.00041 29.5 5.2 46 70-115 31-80 (139)
349 3dkw_A DNR protein; CRP-FNR, H 61.0 6.1 0.00021 33.7 3.5 34 18-51 180-213 (227)
350 2v7f_A RPS19, RPS19E SSU ribos 60.8 11 0.00037 32.2 5.0 49 17-67 68-130 (150)
351 2w48_A Sorbitol operon regulat 60.7 14 0.00049 34.4 6.3 39 12-51 18-56 (315)
352 2qww_A Transcriptional regulat 60.4 9.6 0.00033 30.7 4.5 45 70-114 41-87 (154)
353 3bj6_A Transcriptional regulat 60.2 13 0.00045 29.7 5.3 45 71-115 41-87 (152)
354 3aaf_A Werner syndrome ATP-dep 59.3 6.9 0.00024 32.6 3.4 46 27-72 64-112 (134)
355 1ft9_A Carbon monoxide oxidati 59.2 6.9 0.00024 33.5 3.6 35 17-51 164-198 (222)
356 2rdp_A Putative transcriptiona 59.2 12 0.00042 29.8 4.9 45 71-115 43-89 (150)
357 2fa5_A Transcriptional regulat 59.1 16 0.00056 29.6 5.7 45 71-115 50-96 (162)
358 2eth_A Transcriptional regulat 58.7 15 0.0005 29.8 5.4 46 70-115 44-91 (154)
359 3qph_A TRMB, A global transcri 58.7 0.21 7.3E-06 48.1 -6.9 51 9-60 26-76 (342)
360 3i7f_A Aspartyl-tRNA synthetas 58.4 16 0.00055 37.5 6.6 25 220-245 249-273 (548)
361 1b4a_A Arginine repressor; hel 58.4 23 0.00078 30.1 6.6 69 3-80 7-81 (149)
362 2xvc_A ESCRT-III, SSO0910; cel 58.2 7.7 0.00026 28.2 3.0 45 71-115 11-58 (59)
363 3bju_A Lysyl-tRNA synthetase; 58.1 16 0.00056 37.1 6.6 25 220-245 181-205 (521)
364 3cjn_A Transcriptional regulat 58.0 24 0.00083 28.5 6.7 46 70-115 52-99 (162)
365 2bgc_A PRFA; bacterial infecti 57.9 9.6 0.00033 33.1 4.3 47 17-65 170-217 (238)
366 3ic7_A Putative transcriptiona 57.3 2.3 7.9E-05 34.7 0.1 39 18-56 37-75 (126)
367 2pjp_A Selenocysteine-specific 57.3 11 0.00036 30.4 4.1 103 4-116 10-114 (121)
368 3mz1_A Putative transcriptiona 57.1 2.2 7.6E-05 37.3 0.0 60 6-69 5-65 (300)
369 2h9b_A HTH-type transcriptiona 56.2 2.4 8.1E-05 38.3 0.0 60 6-69 8-68 (312)
370 1p6r_A Penicillinase repressor 56.0 6.4 0.00022 29.0 2.4 47 70-116 9-61 (82)
371 3boq_A Transcriptional regulat 55.9 30 0.001 27.8 6.9 45 71-115 48-95 (160)
372 2pi2_A Replication protein A 3 55.6 2.4 8.4E-05 39.3 0.0 58 2-60 208-268 (270)
373 1uth_A LYSR-type regulatory pr 54.9 2.5 8.7E-05 38.2 0.0 48 20-68 32-80 (315)
374 1qbj_A Protein (double-strande 54.8 8.9 0.0003 29.2 3.1 46 71-116 11-61 (81)
375 1u5t_A Appears to BE functiona 54.5 71 0.0024 29.2 9.6 99 13-116 110-215 (233)
376 1tc3_C Protein (TC3 transposas 54.3 26 0.00088 22.0 5.1 37 5-44 13-49 (51)
377 3fm5_A Transcriptional regulat 53.9 20 0.0007 28.7 5.4 46 70-115 39-87 (150)
378 4b8x_A SCO5413, possible MARR- 53.8 23 0.00079 28.8 5.8 46 70-115 35-84 (147)
379 3cuq_B Vacuolar protein-sortin 52.9 47 0.0016 29.8 8.1 103 10-117 89-203 (218)
380 3fx3_A Cyclic nucleotide-bindi 52.7 21 0.00071 30.6 5.6 51 18-71 180-230 (237)
381 3nqo_A MARR-family transcripti 52.2 30 0.001 29.4 6.4 45 70-114 41-89 (189)
382 2nyx_A Probable transcriptiona 51.0 16 0.00055 30.2 4.4 45 70-114 45-91 (168)
383 3lmm_A Uncharacterized protein 50.5 3.3 0.00011 42.7 0.0 57 3-60 518-575 (583)
384 1tbx_A ORF F-93, hypothetical 50.2 41 0.0014 25.2 6.3 46 70-115 8-59 (99)
385 1olt_A Oxygen-independent copr 50.2 12 0.00041 36.8 4.1 58 6-67 373-434 (457)
386 1in4_A RUVB, holliday junction 50.2 30 0.001 32.1 6.7 70 4-76 262-334 (334)
387 2h98_A HTH-type transcriptiona 49.8 3.4 0.00012 37.5 0.0 60 6-69 8-68 (313)
388 1s3j_A YUSO protein; structura 49.7 15 0.00051 29.5 3.9 46 70-115 37-84 (155)
389 3lfk_A MSCTV, MARR like protei 48.5 39 0.0013 27.2 6.0 61 3-66 38-100 (129)
390 3cdh_A Transcriptional regulat 48.2 25 0.00087 28.2 5.1 46 70-115 43-90 (155)
391 2qen_A Walker-type ATPase; unk 48.2 32 0.0011 31.0 6.4 55 3-62 284-343 (350)
392 3cuo_A Uncharacterized HTH-typ 47.5 35 0.0012 25.2 5.5 44 72-115 26-71 (99)
393 2ra5_A Putative transcriptiona 46.8 5.7 0.0002 35.9 1.0 36 18-53 42-77 (247)
394 1sfx_A Conserved hypothetical 46.7 15 0.00052 27.4 3.3 45 71-115 21-67 (109)
395 3g3z_A NMB1585, transcriptiona 46.3 16 0.00054 29.1 3.5 44 71-114 32-77 (145)
396 4ah6_A Aspartate--tRNA ligase, 45.7 35 0.0012 35.6 6.8 24 220-244 153-177 (617)
397 3qne_A Seryl-tRNA synthetase, 45.5 3.1 0.00011 42.2 -1.1 25 219-244 189-213 (485)
398 1al3_A Cys regulon transcripti 45.3 4.5 0.00015 36.7 0.0 48 21-69 21-70 (324)
399 4aik_A Transcriptional regulat 45.2 91 0.0031 25.3 8.2 44 71-114 32-78 (151)
400 2a61_A Transcriptional regulat 44.6 17 0.00057 28.8 3.4 46 70-115 33-80 (145)
401 2hr3_A Probable transcriptiona 44.2 22 0.00074 28.2 4.0 46 70-115 35-83 (147)
402 3cuq_B Vacuolar protein-sortin 43.7 42 0.0014 30.1 6.3 48 2-50 155-202 (218)
403 1o5l_A Transcriptional regulat 43.5 4.9 0.00017 34.4 0.0 34 18-51 166-199 (213)
404 2k4b_A Transcriptional regulat 43.0 6.2 0.00021 31.2 0.5 49 68-116 33-87 (99)
405 2dk5_A DNA-directed RNA polyme 41.5 17 0.00057 28.2 2.8 45 70-114 20-68 (91)
406 1fse_A GERE; helix-turn-helix 41.3 32 0.0011 24.1 4.2 38 2-42 15-52 (74)
407 3m8e_A Putative DNA-binding pr 41.2 1.3E+02 0.0043 23.8 7.8 64 4-67 45-112 (124)
408 2xub_A DNA-directed RNA polyme 40.9 23 0.00078 35.9 4.5 49 4-53 363-411 (534)
409 3bdd_A Regulatory protein MARR 40.4 21 0.00071 28.0 3.3 46 70-115 31-78 (142)
410 2jpc_A SSRB; DNA binding prote 39.6 39 0.0013 22.9 4.3 37 2-41 2-38 (61)
411 2bv6_A MGRA, HTH-type transcri 39.4 19 0.00067 28.4 3.0 45 71-115 38-84 (142)
412 1uze_A Angiotensin converting 39.3 28 0.00095 35.7 4.8 45 219-269 277-331 (589)
413 3nxq_A Angiotensin-converting 39.2 16 0.00054 38.2 3.0 221 3-259 88-325 (629)
414 2fbi_A Probable transcriptiona 38.8 17 0.00057 28.6 2.5 45 71-115 37-83 (142)
415 1jgs_A Multiple antibiotic res 38.7 23 0.00077 27.8 3.3 45 71-115 35-81 (138)
416 2lnb_A Z-DNA-binding protein 1 37.7 21 0.00073 27.4 2.8 43 72-114 21-66 (80)
417 2xzm_8 RPS25E,; ribosome, tran 37.5 30 0.001 29.5 3.9 48 15-62 62-111 (143)
418 2g9w_A Conserved hypothetical 37.4 23 0.00079 28.7 3.2 47 70-116 9-62 (138)
419 2cja_A Seryl-tRNA synthetase; 37.1 15 0.00053 37.4 2.5 116 219-349 235-357 (522)
420 3eqx_A FIC domain containing t 37.1 36 0.0012 32.9 5.0 45 4-49 300-344 (373)
421 3ulq_B Transcriptional regulat 37.0 39 0.0013 25.7 4.3 38 2-42 33-70 (90)
422 1qgp_A Protein (double strande 36.8 14 0.00049 27.5 1.7 45 72-116 16-65 (77)
423 2pij_A Prophage PFL 6 CRO; tra 36.5 14 0.00047 25.8 1.5 47 7-67 7-53 (67)
424 3jth_A Transcription activator 36.3 70 0.0024 23.8 5.7 43 72-115 25-69 (98)
425 3sqn_A Conserved domain protei 36.3 54 0.0018 32.6 6.3 90 3-94 20-118 (485)
426 2htj_A P fimbrial regulatory p 35.8 29 0.00099 25.4 3.3 42 73-114 3-46 (81)
427 2pex_A Transcriptional regulat 35.8 25 0.00087 28.1 3.2 45 71-115 48-94 (153)
428 2xub_A DNA-directed RNA polyme 35.0 88 0.003 31.5 7.7 112 4-116 22-161 (534)
429 1bja_A Transcription regulator 34.3 35 0.0012 27.0 3.6 49 66-114 10-63 (95)
430 2frh_A SARA, staphylococcal ac 33.9 30 0.001 27.3 3.3 45 70-114 37-85 (127)
431 1ati_A Glycyl-tRNA synthetase; 33.6 25 0.00085 35.4 3.3 39 309-349 179-221 (505)
432 3u5c_Z RP45, S31, YS23, 40S ri 33.4 37 0.0013 27.6 3.7 35 15-49 58-92 (108)
433 3keo_A Redox-sensing transcrip 33.3 41 0.0014 30.1 4.4 41 4-44 19-60 (212)
434 3hrs_A Metalloregulator SCAR; 33.1 89 0.003 27.3 6.6 52 59-116 1-54 (214)
435 1di1_A Aristolochene synthase; 32.7 7.8 0.00027 35.3 -0.5 58 206-263 2-62 (300)
436 2x96_A Angiotensin converting 31.5 52 0.0018 33.9 5.4 32 219-256 281-312 (598)
437 1t6s_A Conserved hypothetical 31.4 43 0.0015 28.8 4.1 58 5-66 98-160 (162)
438 2o3f_A Putative HTH-type trans 31.0 63 0.0022 25.5 4.8 46 2-47 22-70 (111)
439 3f2g_A Alkylmercury lyase; MER 30.8 49 0.0017 30.0 4.5 37 4-41 25-61 (220)
440 3r0a_A Putative transcriptiona 30.7 83 0.0029 24.9 5.5 45 70-114 26-74 (123)
441 1ku9_A Hypothetical protein MJ 30.5 39 0.0013 26.5 3.4 45 71-115 27-74 (152)
442 1je8_A Nitrate/nitrite respons 30.5 57 0.002 24.0 4.2 36 2-40 25-60 (82)
443 3f3x_A Transcriptional regulat 30.2 33 0.0011 27.1 3.0 45 70-115 37-83 (144)
444 2z99_A Putative uncharacterize 30.1 75 0.0026 28.7 5.6 59 5-67 104-166 (219)
445 2dt5_A AT-rich DNA-binding pro 29.8 60 0.002 28.8 4.9 40 4-43 15-55 (211)
446 2fbk_A Transcriptional regulat 29.8 46 0.0016 27.7 4.0 45 71-115 70-119 (181)
447 1hsj_A Fusion protein consisti 29.5 44 0.0015 32.3 4.3 45 70-114 404-452 (487)
448 2vt3_A REX, redox-sensing tran 29.0 64 0.0022 28.7 4.9 41 4-44 20-61 (215)
449 4gyi_A RIO2 kinase; protein ki 29.0 66 0.0022 31.5 5.4 65 3-67 16-86 (397)
450 3c57_A Two component transcrip 28.7 63 0.0021 24.5 4.2 36 2-40 31-66 (95)
451 1cf7_A Protein (transcription 28.3 87 0.003 23.5 4.8 54 3-56 16-71 (76)
452 3u2r_A Regulatory protein MARR 27.0 45 0.0015 27.2 3.4 45 71-115 47-95 (168)
453 2cfx_A HTH-type transcriptiona 26.9 56 0.0019 26.4 3.9 43 72-114 7-51 (144)
454 3pqk_A Biofilm growth-associat 26.6 2E+02 0.0067 21.4 6.8 46 69-115 21-69 (102)
455 2oqg_A Possible transcriptiona 26.5 1.1E+02 0.0038 23.0 5.4 46 69-115 19-67 (114)
456 2fna_A Conserved hypothetical 26.5 87 0.003 28.0 5.5 44 3-49 292-341 (357)
457 2l0k_A Stage III sporulation p 26.3 72 0.0025 24.8 4.2 33 4-38 10-42 (93)
458 3to7_A Histone acetyltransfera 26.3 50 0.0017 31.0 3.7 55 4-62 196-250 (276)
459 1ucr_A Protein DSVD; dissimila 25.9 93 0.0032 23.8 4.5 68 2-69 4-76 (78)
460 1pdn_C Protein (PRD paired); p 25.6 74 0.0025 24.1 4.2 78 5-94 25-103 (128)
461 3cuq_A Vacuolar-sorting protei 25.5 1.2E+02 0.0039 27.8 6.0 83 27-116 114-202 (234)
462 1neq_A DNA-binding protein NER 25.4 71 0.0024 23.4 3.9 31 4-36 12-42 (74)
463 1z91_A Organic hydroperoxide r 25.3 26 0.00089 27.7 1.5 45 71-115 41-87 (147)
464 3go5_A Multidomain protein wit 25.3 49 0.0017 30.9 3.5 62 54-117 210-280 (285)
465 1jhf_A LEXA repressor; LEXA SO 25.1 98 0.0034 26.3 5.3 47 3-49 8-59 (202)
466 2k9l_A RNA polymerase sigma fa 24.9 1.1E+02 0.0039 22.4 5.0 39 4-42 35-74 (76)
467 2w25_A Probable transcriptiona 24.6 65 0.0022 26.1 3.9 43 72-114 9-53 (150)
468 1k78_A Paired box protein PAX5 24.6 96 0.0033 24.8 4.9 78 5-94 40-118 (149)
469 2pn6_A ST1022, 150AA long hypo 24.4 66 0.0022 26.0 3.9 43 72-114 5-49 (150)
470 1ihs_I Hirutonin; hydrolase(se 24.0 59 0.002 19.5 2.4 11 277-287 13-23 (26)
471 2pq8_A Probable histone acetyl 23.8 54 0.0018 30.8 3.5 54 4-61 196-249 (278)
472 1w7p_D VPS36P, YLR417W; ESCRT- 23.5 1E+02 0.0035 31.7 5.8 85 28-117 455-550 (566)
473 2o8x_A Probable RNA polymerase 23.5 1.5E+02 0.005 20.2 5.1 35 3-39 20-54 (70)
474 3eyi_A Z-DNA-binding protein 1 23.5 59 0.002 24.5 3.0 48 70-117 10-60 (72)
475 2ovg_A Phage lambda CRO; trans 23.2 19 0.00064 26.3 0.2 37 19-68 16-54 (66)
476 2dbb_A Putative HTH-type trans 23.2 58 0.002 26.4 3.3 43 72-114 11-55 (151)
477 3klo_A Transcriptional regulat 23.1 1.1E+02 0.0037 25.9 5.2 39 2-43 163-201 (225)
478 1zs4_A Regulatory protein CII; 22.9 79 0.0027 24.4 3.7 33 2-38 14-46 (83)
479 1x3u_A Transcriptional regulat 22.8 1E+02 0.0034 21.8 4.2 36 3-41 21-56 (79)
480 3f6o_A Probable transcriptiona 22.4 1.3E+02 0.0044 23.3 5.1 46 69-115 16-64 (118)
481 1p4w_A RCSB; solution structur 22.2 92 0.0032 24.1 4.1 38 2-42 38-75 (99)
482 3c3w_A Two component transcrip 22.2 81 0.0028 26.8 4.2 39 2-43 153-191 (225)
483 3iwf_A Transcription regulator 22.1 69 0.0024 25.3 3.4 46 2-47 18-66 (107)
484 1r1u_A CZRA, repressor protein 21.8 1.3E+02 0.0045 22.8 5.0 46 69-115 24-72 (106)
485 1u5t_A Appears to BE functiona 21.7 66 0.0022 29.4 3.6 48 3-51 169-216 (233)
486 2fxa_A Protease production reg 21.7 36 0.0012 29.5 1.8 46 70-115 48-95 (207)
487 3i4p_A Transcriptional regulat 21.6 79 0.0027 26.2 3.9 42 72-113 5-48 (162)
488 2rnj_A Response regulator prot 21.5 99 0.0034 22.9 4.1 37 2-41 33-69 (91)
489 3cuq_A Vacuolar-sorting protei 20.4 71 0.0024 29.2 3.5 48 3-51 156-203 (234)
490 2x48_A CAG38821; archeal virus 20.4 1.5E+02 0.005 19.5 4.4 27 10-38 27-53 (55)
491 2p5v_A Transcriptional regulat 20.4 87 0.003 25.7 3.9 43 72-114 12-56 (162)
492 2kko_A Possible transcriptiona 20.3 1.5E+02 0.005 22.7 5.0 43 72-115 27-71 (108)
493 1on2_A Transcriptional regulat 20.3 1.4E+02 0.0049 23.4 5.1 42 75-116 13-56 (142)
494 1w7p_D VPS36P, YLR417W; ESCRT- 20.2 1.5E+02 0.0051 30.5 6.2 49 2-51 495-550 (566)
495 2ns0_A Hypothetical protein; r 20.1 2.9E+02 0.0098 21.3 6.4 51 2-52 8-65 (85)
No 1
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=100.00 E-value=1.6e-90 Score=706.59 Aligned_cols=344 Identities=50% Similarity=0.835 Sum_probs=169.2
Q ss_pred CHHHHHHHHHhhCC-CCCChHHHHHHhCCCHHHHHHHHHHhccCC-cEEEEeeeeEEEEeChhHHHHhhcCChHHHHHHh
Q 018851 1 MAEEAILGYLEKNE-QISDSGNFAAERGFDHNDVVNVIKSLHGFR-YIDAQDIKRETWVLTGEGKKYAAEGSPEVQLFLA 78 (349)
Q Consensus 1 ~~e~~iL~~L~~~~-~~~~~~~la~~~g~~~~~v~~~~~~L~~kg-li~~~~~~~~~~~LTeEG~~~l~~G~PE~rl~~~ 78 (349)
+++++||.+|.+.+ . .+++++|+.+|++|++|+++++||+++| ||++++.+.+.|+||+||++|+++||||+||+++
T Consensus 5 ~~~~~iL~~l~~~~~~-~~~~~~a~~~~~~~~~v~~~~~~L~~~~~~v~~~~~~~~~~~Lt~eg~~~~~~G~pE~~~~~~ 83 (508)
T 3l4g_A 5 QVAELLLRRLEASDGG-LDSAELAAELGMEHQAVVGAVKSLQALGEVIEAELRSTKHWELTAEGEEIAREGSHEARVFRS 83 (508)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcCCC-cCHHHHHHHcCCCHHHHHHHHHHHHhCCCeEEEEEEEEEEEEECHHHHHHHHcCCHHHHHHHH
Confidence 37899999998776 5 5889999999999999999999999998 9999999999999999999999999999999999
Q ss_pred cCcCCCCCHHHHHhhcCchhhhhHHHHHhhCCcEeeCce------eeeccccchHHHHHHHHHHHcCC--CCCHHHHHHH
Q 018851 79 VPAEGSISKDELQKKLDPAVFKIGCSQAGKNKWVEMGKQ------VSRKVQNVEDKVKDLLLQVQNGH--ALSKEEISSL 150 (349)
Q Consensus 79 l~~~g~~~~~el~~~~~~~~~~ig~g~~~k~~wi~i~~~------i~~~~~~~~d~~~~~L~~i~~g~--~~~~~~~~~L 150 (349)
|+.+| ++++||.+ + +.++||+|||+|+|||+++++ +.++++.+.|.++..|+.|.++. .++++.+++|
T Consensus 84 ~~~~~-~~~~~l~~-~--~~~~i~~~~~~k~~wi~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~l 159 (508)
T 3l4g_A 84 IPPEG-LAQSELMR-L--PSGKVGFSKAMSNKWIRVDKSAADGPRVFRVVDSMEDEVQRRLQLVRGGQAEKLGEKERSEL 159 (508)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhcC-ccHHHHhc-C--cchhHHHHHHHHCCCEEecCCCcCcceEeeccCccchHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 98644 89999987 3 467999999999999999885 44566667788899999998654 3567889999
Q ss_pred hhcCceeeeEEEEEEEecCCCCCcchhhhhcccccccccCCCcccccccccccccCCCCCCCCCCChHHHHHHHHHHHHh
Q 018851 151 KARKLIVPQTWKGYSVRKGPNYAPKRKKAATDLTRENLQKGDWKELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFL 230 (349)
Q Consensus 151 kkRkLi~~~~~~~~~i~kg~~~~~~~~~~~~~lt~e~l~sg~Wk~~~fk~yn~~~~~~~~~~g~~HPl~~~~~~ir~if~ 230 (349)
||||||+..+.+.|.|++|++|+++..+++|+||+|||.||+||++.||+|||+++|+++..|..||+++++++||++|.
T Consensus 160 kkRklv~~~~~~~~~v~~g~~~~~~~~~~~t~lT~e~l~sg~Wk~~~f~~y~~~~~g~~~~~G~lHPl~~v~~~Ir~if~ 239 (508)
T 3l4g_A 160 RKRKLLAEVTLKTYWVSKGSAFSTSISKQETELSPEMISSGSWRDRPFKPYNFLAHGVLPDSGHLHPLLKVRSQFRQIFL 239 (508)
T ss_dssp -----------------------CCSCCCCCSCCTTTTTSSTTTTSCCCCCCSSSCCCCCCCCBCCHHHHHHHHHHHHHH
T ss_pred HhcCCeEEEEEEEEEEecchhhhhhhhhhhccCCHHHhcCCCcCCCCceecccCCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceecCCCCceeeeehhhhccCCCCCCCCCCCCCeeeecCCCCCCCCCHHHHHHHHHHhhcCCCCCCCcccccchhhh
Q 018851 231 QMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHESGGYGSRGYGYEWKREEA 310 (349)
Q Consensus 231 ~mGF~e~~~~~~Ves~fwNFDaLf~PqdHPARd~~DTFyl~~p~~~~~~p~~~~erVk~vHe~Gg~gS~Gw~Y~W~~~~a 310 (349)
+|||+||.+||+||++|||||+||+||||||||+||||||++|.....+|++|++||++|||+||+||+||+|.|+.+++
T Consensus 240 ~mGF~Ev~t~~~ves~~~NFDaLn~P~dHPaR~~~Dtfyi~~P~~~~~~~e~~~~~v~~~He~g~~~s~g~~~~~~~~~~ 319 (508)
T 3l4g_A 240 EMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQGGYGSQGYKYNWKLDEA 319 (508)
T ss_dssp HTTCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBSTTCBCSCCCHHHHHHHHHHHHTCBTTBCCCCSCCCHHHH
T ss_pred HCcCeEeccCCccccHHHHHHhcCCCCCCcccccCceEEEcCccccccccHHHHHhhhhhhhccccCCcccccccccccc
Confidence 99999987899999999999999999999999999999999998777889999999999999999999999999999999
Q ss_pred hccccCCCCchhHHHHHHHhhc-CCCCCceEEecCceecC
Q 018851 311 NKNLLRTHTTAVSSRMLKALAE-KPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 311 ~~~vLRTHTTavs~r~L~~l~~-~~~~p~k~fsi~rVfR~ 349 (349)
.+.+||||||++++|+|+.+.. ...+|+|+|+||||||+
T Consensus 320 ~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~ 359 (508)
T 3l4g_A 320 RKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRN 359 (508)
T ss_dssp TBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECC
T ss_pred ccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEec
Confidence 9999999999999999987654 35579999999999996
No 2
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=100.00 E-value=4.1e-36 Score=310.33 Aligned_cols=161 Identities=24% Similarity=0.317 Sum_probs=93.4
Q ss_pred hhhhcccccccccCCCcccc--cccccccccCCCC--CCCCCCChHHHHHHHHHHHHhhCCceecCCCCceeeeehhhhc
Q 018851 177 KKAATDLTRENLQKGDWKEL--EFKEYNFNAKGQP--AEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDA 252 (349)
Q Consensus 177 ~~~~~~lt~e~l~sg~Wk~~--~fk~yn~~~~~~~--~~~g~~HPl~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDa 252 (349)
.+++++||+||+ +|+|++. .|++||++...|. ...|+.||+++++++||++|.+|||+||. ||.|+++|||
T Consensus 23 ~~~~~~lt~e~~-~~~W~~~~~~~~~~~id~~~P~~~~~~G~~HPl~~~~~~IR~if~~mGF~E~~-~p~vese~~n--- 97 (648)
T 2odr_B 23 REEIIEMANKDF-EKAWIETKDLIKAKKINESYPRIKPVFGKTHPVNDTIENLRQAYLRMGFEEYI-NPVIVDERDI--- 97 (648)
T ss_dssp ----------------------------CTTSGGGCCCCCCBCCHHHHHHHHHHHHHHHTTCEECC-CCSEEEHHHH---
T ss_pred hHHHHHhCHHHh-hHHHHhhhhhccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEee-CCEEeehhhh---
Confidence 467899999999 9999999 9999998876554 48999999999999999999999999997 8999999999
Q ss_pred cCCCCC-CCCCCCCC-eeeecCCCC-----------------------------------CCCCC-HHHHHHHHHHhhcC
Q 018851 253 LFQPQQ-HPARDSHD-TFFLEEPST-----------------------------------TRELP-EDYVERVKRVHESG 294 (349)
Q Consensus 253 Lf~Pqd-HPARd~~D-TFyl~~p~~-----------------------------------~~~~p-~~~~erVk~vHe~G 294 (349)
+||+ ||||++|| ||||++|.. ...+| ++|+++|+++|+.
T Consensus 98 --~pq~gHpAR~~~D~tFyl~~P~~~~vg~~~~~~~~i~~~g~~is~~~~~l~~~~~~yk~~~~~~~dl~~~v~~~h~~- 174 (648)
T 2odr_B 98 --YKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEI- 174 (648)
T ss_dssp --HHHHGGGHHHHHHTCEEEEBCCC-------------------------------------------------------
T ss_pred --CCCcCCCccccCCceEEECCCCCCccccchhhhhhhhhcccccchhhhhhhhhhhhhccCCCChHHHHHHHHHHhcc-
Confidence 5999 99999999 999998752 11233 6899999999998
Q ss_pred CCCCCCccc--ccchh------hhhccccCCCCch---hHHHHHHHhhcCCCCCceEEecCceecC
Q 018851 295 GYGSRGYGY--EWKRE------EANKNLLRTHTTA---VSSRMLKALAEKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 295 g~gS~Gw~Y--~W~~~------~a~~~vLRTHTTa---vs~r~L~~l~~~~~~p~k~fsi~rVfR~ 349 (349)
+||.||+| +|+++ +|...+|||||++ .+++++. .+..+|.|+|.+|||||+
T Consensus 175 -~~s~g~~~~~~~~~e~~~l~~~~~~sVLRTsLlPGLL~~vr~N~---~R~~~pvRLFEIGrVFR~ 236 (648)
T 2odr_B 175 -SSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLM---NKKPLPFKLFSIDRCFRR 236 (648)
T ss_dssp ----------------CCCCCCBCCSEEECCCTHHHHHHHHHHHT---TTSCSCEEEEEEEEEECC
T ss_pred -ccccceeeccccChhhhccccccccCcccccchhhHHHHHHHHH---hcCCCCeEEEEEeeEEec
Confidence 89999999 99998 8999999999999 8888764 234479999999999995
No 3
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=100.00 E-value=5.4e-36 Score=310.12 Aligned_cols=161 Identities=24% Similarity=0.315 Sum_probs=117.1
Q ss_pred hhhhcccccccccCCCcccc--cccccccccCCCCC--CCCCCChHHHHHHHHHHHHhhCCceecCCCCceeeeehhhhc
Q 018851 177 KKAATDLTRENLQKGDWKEL--EFKEYNFNAKGQPA--EGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDA 252 (349)
Q Consensus 177 ~~~~~~lt~e~l~sg~Wk~~--~fk~yn~~~~~~~~--~~g~~HPl~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDa 252 (349)
.+++++||+||+ +|+|++. .||+||++...|.. ..|+.||+++++++||++|.+|||+||. ||.|+++|||
T Consensus 23 ~~~~~~lt~e~~-~~~W~~~~~~~~~~~id~~~P~~~~~~G~~HPl~~~~~~IReif~~mGF~E~~-~p~vese~~n--- 97 (685)
T 2odr_D 23 REEIIEMANKDF-EKAWIETKDLIKAKKINESYPRIKPVFGKTHPVNDTIENLRQAYLRMGFEEYI-NPVIVDERDI--- 97 (685)
T ss_dssp CHHHHHHHHHCH-HHHHHHHGGGSCCCCGGGSTTTCCCCCCBCCHHHHHHHHHHHHHHHTTCEECC-CCSEEEHHHH---
T ss_pred hHHHhhhCHHHh-hHHHHhhhhhccccccCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHCCCEEee-CCEEeehHHh---
Confidence 467899999999 9999999 99999998866655 8999999999999999999999999997 8999999999
Q ss_pred cCCCCC-CCCCCCCC-eeeecCCCC-----------------------------------CCCCC-HHHHHHHHHHhhcC
Q 018851 253 LFQPQQ-HPARDSHD-TFFLEEPST-----------------------------------TRELP-EDYVERVKRVHESG 294 (349)
Q Consensus 253 Lf~Pqd-HPARd~~D-TFyl~~p~~-----------------------------------~~~~p-~~~~erVk~vHe~G 294 (349)
+||+ ||||++|| ||||++|.. ...+| ++|+++|+++|+.
T Consensus 98 --~pq~gHPAR~~~D~tFyL~~P~~~~vg~~~~~~~~i~~~g~~is~~~~~l~~~~h~yk~~~~~~~dl~~~v~~~h~~- 174 (685)
T 2odr_D 98 --YKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEI- 174 (685)
T ss_dssp --HHHHGGGHHHHHHTCEEEEBCCC-------------------------------------------------------
T ss_pred --CCCcCCCccccCCcEEEECCCCCCccccchhhhhhhhhcccccchhhhhhhhhhhhhccCCCChHHHHHHHHHHhcc-
Confidence 5999 99999999 999998752 11233 6899999999998
Q ss_pred CCCCCCccc--ccchh------hhhccccCCCCch---hHHHHHHHhhcCCCCCceEEecCceecC
Q 018851 295 GYGSRGYGY--EWKRE------EANKNLLRTHTTA---VSSRMLKALAEKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 295 g~gS~Gw~Y--~W~~~------~a~~~vLRTHTTa---vs~r~L~~l~~~~~~p~k~fsi~rVfR~ 349 (349)
+||.||+| +|+++ +|...+|||||++ .+++++. .+..+|.|+|.+|||||+
T Consensus 175 -~~s~g~~~~~~~~~ef~~l~~~a~~sVLRTSLlPGLL~~vr~N~---~R~~~pvRLFEIGrVFR~ 236 (685)
T 2odr_D 175 -SSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLM---NKKPLPFKLFSIDRCFRR 236 (685)
T ss_dssp ----------------CCCCCCBCCSEEECCCTHHHHHHHHHHHT---TTSCSCEEEEEEEEEECC
T ss_pred -ccccceeeccccChhhhccCcccccCcccccchhhHHHHHHHHH---hCCCCCeEEEEeccEEec
Confidence 89999999 99998 8999999999999 8888764 234479999999999995
No 4
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=100.00 E-value=4.8e-36 Score=310.13 Aligned_cols=161 Identities=24% Similarity=0.317 Sum_probs=116.7
Q ss_pred hhhhcccccccccCCCcccc--cccccccccCCCC--CCCCCCChHHHHHHHHHHHHhhCCceecCCCCceeeeehhhhc
Q 018851 177 KKAATDLTRENLQKGDWKEL--EFKEYNFNAKGQP--AEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDA 252 (349)
Q Consensus 177 ~~~~~~lt~e~l~sg~Wk~~--~fk~yn~~~~~~~--~~~g~~HPl~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDa 252 (349)
.+++++||+||+ +|+|++. .||+||++...|. ...|+.||+++++++||++|.+|||+||. ||.|+++|||
T Consensus 23 ~~~~~~lt~e~~-~~~W~~~~~~~~~~~id~~~P~~~~~~G~~HPl~~~~~~IR~if~~mGF~E~~-~p~vese~~n--- 97 (665)
T 2odr_A 23 REEIIEMANKDF-EKAWIETKDLIKAKKINESYPRIKPVFGKTHPVNDTIENLRQAYLRMGFEEYI-NPVIVDERDI--- 97 (665)
T ss_dssp CHHHHHHHHHCH-HHHHHHHGGGSCCCCTTTSGGGSCCCCCBCCHHHHHHHHHHHHHHHTTCEECC-CCSEEEHHHH---
T ss_pred hHHHHHhCHHHh-hHHHHhhhhhccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEee-CCEEeeehhh---
Confidence 467899999999 9999999 9999998876554 48999999999999999999999999997 8999999999
Q ss_pred cCCCCC-CCCCCCCC-eeeecCCCC-----------------------------------CCCCC-HHHHHHHHHHhhcC
Q 018851 253 LFQPQQ-HPARDSHD-TFFLEEPST-----------------------------------TRELP-EDYVERVKRVHESG 294 (349)
Q Consensus 253 Lf~Pqd-HPARd~~D-TFyl~~p~~-----------------------------------~~~~p-~~~~erVk~vHe~G 294 (349)
+||+ ||||++|| ||||++|.. ...+| ++|+++|+++|+.
T Consensus 98 --~pq~gHpAR~~~D~tFyL~~P~~~~vg~~~~~~~~i~~~g~~is~~~~~l~~~~~~yk~~~~~~~dl~~~v~~~h~~- 174 (665)
T 2odr_A 98 --YKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEI- 174 (665)
T ss_dssp --HHHHGGGHHHHHHTCEEEEBCCC-------------------------------------------------------
T ss_pred --CCCcCCCccccCCcEEEECCCCCCccccchhhhhhhhhcccccchhhhhhhhhhhhhccCCCChHHHHHHHHHHhcc-
Confidence 5999 99999999 999998752 11233 6899999999998
Q ss_pred CCCCCCccc--ccchh------hhhccccCCCCch---hHHHHHHHhhcCCCCCceEEecCceecC
Q 018851 295 GYGSRGYGY--EWKRE------EANKNLLRTHTTA---VSSRMLKALAEKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 295 g~gS~Gw~Y--~W~~~------~a~~~vLRTHTTa---vs~r~L~~l~~~~~~p~k~fsi~rVfR~ 349 (349)
+||.||+| +|+++ +|...+|||||++ .+++++. .+..+|.|+|.+|||||+
T Consensus 175 -~~s~g~~~~~~~~~e~~~l~~~a~~sVLRTSLlPGLL~~lr~N~---~R~~~pvRLFEIGrVFR~ 236 (665)
T 2odr_A 175 -SSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLM---NKKPLPFKLFSIDRCFRR 236 (665)
T ss_dssp ----------------CCCCCCBCCSEEECCCTHHHHHHHHHHHT---TTSCSCEEEEEEEEEECC
T ss_pred -ccccceeeccccChhhhccCcccccCcccccchhhHHHHHHHHH---hcCCCCeEEEEEeeEEec
Confidence 89999999 99998 8999999999999 8888764 234479999999999995
No 5
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=100.00 E-value=6.8e-36 Score=310.00 Aligned_cols=161 Identities=24% Similarity=0.315 Sum_probs=117.0
Q ss_pred hhhhcccccccccCCCcccc--cccccccccCCCCC--CCCCCChHHHHHHHHHHHHhhCCceecCCCCceeeeehhhhc
Q 018851 177 KKAATDLTRENLQKGDWKEL--EFKEYNFNAKGQPA--EGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDA 252 (349)
Q Consensus 177 ~~~~~~lt~e~l~sg~Wk~~--~fk~yn~~~~~~~~--~~g~~HPl~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDa 252 (349)
.+++++||+||+ +|+|++. .||+||++...|.. ..|+.||+++++++||++|.+|||+||. ||.|+++|||
T Consensus 23 ~~~~~~lt~e~~-~~~W~~~~~~~~~~~id~~~P~~~~~~G~~HPl~~~~~~IReif~~mGF~Ev~-~p~Vese~~n--- 97 (701)
T 2odr_C 23 REEIIEMANKDF-EKAWIETKDLIKAKKINESYPRIKPVFGKTHPVNDTIENLRQAYLRMGFEEYI-NPVIVDERDI--- 97 (701)
T ss_dssp CHHHHHHHHHCH-HHHHHHHGGGSCCCCTTTSSTTCCCCCCBCCHHHHHHHHHHHHHHHTTCEECC-CCSEEEHHHH---
T ss_pred hHHHHHhCHHHh-hHHHHhhhhhccccccCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHCCCEEee-CCEEeeehhh---
Confidence 467899999999 9999999 99999998866654 8999999999999999999999999997 8999999999
Q ss_pred cCCCCC-CCCCCCCC-eeeecCCCC-----------------------------------CCCCC-HHHHHHHHHHhhcC
Q 018851 253 LFQPQQ-HPARDSHD-TFFLEEPST-----------------------------------TRELP-EDYVERVKRVHESG 294 (349)
Q Consensus 253 Lf~Pqd-HPARd~~D-TFyl~~p~~-----------------------------------~~~~p-~~~~erVk~vHe~G 294 (349)
+||+ ||||++|| ||||++|.. ...+| +||+++|+++|+.
T Consensus 98 --~pq~gHPAR~~~D~tFYL~~P~~~~vg~~~~~~~~i~~~g~~is~~~~~l~~~~h~yk~~~~~~~dlv~~v~~~h~~- 174 (701)
T 2odr_C 98 --YKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEI- 174 (701)
T ss_dssp --HHHHGGGHHHHHHTCEEEEECCC-------------------------------------------------------
T ss_pred --CCCcCCCccccCCcEEEECCCCCCccccchhhhhhhhhcccccchhhhhhhhhhhhhccCCCChHHHHHHHHHHhcc-
Confidence 5999 99999999 999998752 11233 6899999999998
Q ss_pred CCCCCCccc--ccchh------hhhccccCCCCch---hHHHHHHHhhcCCCCCceEEecCceecC
Q 018851 295 GYGSRGYGY--EWKRE------EANKNLLRTHTTA---VSSRMLKALAEKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 295 g~gS~Gw~Y--~W~~~------~a~~~vLRTHTTa---vs~r~L~~l~~~~~~p~k~fsi~rVfR~ 349 (349)
+||.||+| +|+++ +|...+|||||++ .+++++. .+..+|.|+|.+|||||+
T Consensus 175 -~~s~g~~~~~~~~~ef~~l~~~a~~sVLRTSLlPGLL~~vr~N~---~R~~~pvRLFEIGrVFR~ 236 (701)
T 2odr_C 175 -SSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLM---NKKPLPFKLFSIDRCFRR 236 (701)
T ss_dssp ----------------CCCCCCEEEEEEECCCTHHHHHHHHHHHT---TTSCSCEEEEEEEEEECC
T ss_pred -ccccceeeccccChhhhccCcccccCcccccchhhHHHHHHHHH---hCCCCCeEEEEEeeEEcc
Confidence 89999999 99998 8999999999999 8888764 234479999999999995
No 6
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=6.9e-35 Score=298.78 Aligned_cols=161 Identities=24% Similarity=0.364 Sum_probs=142.0
Q ss_pred hhhhcccccccccCCCcccc--cccccccccCCCCC--CCCCCChHHHHHHHHHHHHhhCCceecCCCCceeeeehhhhc
Q 018851 177 KKAATDLTRENLQKGDWKEL--EFKEYNFNAKGQPA--EGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDA 252 (349)
Q Consensus 177 ~~~~~~lt~e~l~sg~Wk~~--~fk~yn~~~~~~~~--~~g~~HPl~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDa 252 (349)
.+++++||+||+. |+|++. .|++|+++...|.. ..|+.||+++++++||++|.+|||+||. ||.|+++|||
T Consensus 15 ~~~~~~lt~~~~~-~~w~~~~~~~~~~~~d~~~P~~~~~~G~~HPl~~~~~~ir~~f~~mGF~e~~-~p~ies~~~n--- 89 (549)
T 2du7_A 15 IKKVLELAEKDFE-TAWRETRALIKDKHIDNKYPRLKPVYGKPHPVMETIERLRQAYLRMGFEEMI-NPVIVDEMEI--- 89 (549)
T ss_dssp HHHHHTTSTTCCS-STTTSCCCSSCCCTTTTSSSSSCCCCCCCCHHHHHHHHHHHHHHTTTCEECC-CCSCEEHHHH---
T ss_pred hHHHHHhhHHHHH-HHHHhhhhhhhccCcCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHCCCEEee-CCeEeehHHh---
Confidence 4678999999999 999999 99999988766544 8899999999999999999999999997 8999999999
Q ss_pred cCCCCC-CCCCCCCC-eeeecCCCC------------------------------------CCCCC-HHHHHHHHHHhhc
Q 018851 253 LFQPQQ-HPARDSHD-TFFLEEPST------------------------------------TRELP-EDYVERVKRVHES 293 (349)
Q Consensus 253 Lf~Pqd-HPARd~~D-TFyl~~p~~------------------------------------~~~~p-~~~~erVk~vHe~ 293 (349)
+||+ ||||++|| ||||++|.. ...+| ++|+++|+.+|++
T Consensus 90 --~pq~ghpAr~~~D~tfyl~~p~~~~~g~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~v~~~~~~ 167 (549)
T 2du7_A 90 --YKQFGPEAMAVLDRCFYLAGLPRPDVGLGNEKVEIIKNLGIDIDEEKKERLREVLHLYKKGAIDGDDLVFEIAKALNV 167 (549)
T ss_dssp --HHHTCTTHHHHGGGCCEEECCCCCCCSSSSTTSCCSSCSCCCCSCCCSSSCCCSCCCSSSSCCCSSSCCSCCCSSSSC
T ss_pred --CCCcCCCcccccCceEEECCCCCcccccchhhhhhhhhcccccccchhhhhhhhhhhhccCCCchhhhhhHhhhhhhc
Confidence 5999 99999999 999998742 11233 6899999999999
Q ss_pred CCCCCCCccc--ccchh------hhhccccCCCCch---hHHHHHHHhhcCCCCCceEEecCceecC
Q 018851 294 GGYGSRGYGY--EWKRE------EANKNLLRTHTTA---VSSRMLKALAEKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 294 Gg~gS~Gw~Y--~W~~~------~a~~~vLRTHTTa---vs~r~L~~l~~~~~~p~k~fsi~rVfR~ 349 (349)
+||.||+| +|+++ +++..+|||||++ .+++++. .+..+|.|+|.+|+|||+
T Consensus 168 --~~s~g~~~~d~~~~e~~~~~~~~e~svLRTsLlPGLL~~vr~N~---~r~~~pvrlFEiGrVFr~ 229 (549)
T 2du7_A 168 --SNEMGLKVLETAFPEFKDLKPESTTLTLRSHMTSGWFITLSSLI---KKRKLPLKLFSIDRCFRR 229 (549)
T ss_dssp --CSCSCCCSSSSSCTTSSSCCCCEEEEECCSTTHHHHHHHHHTTT---TTSCSSEEEEEEEEECCC
T ss_pred --ccccccccccccchhhccccccccccccccccchhHHHHHHHHH---hcCCCCeEEEEEeeEEec
Confidence 89999999 89998 8999999999999 7777653 334579999999999985
No 7
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=99.96 E-value=3e-30 Score=258.46 Aligned_cols=125 Identities=23% Similarity=0.433 Sum_probs=113.8
Q ss_pred hhhcccccccccCCCcccccccccccccCCCCCCCCCCChHHHHHHHHHHHHhhC--------CceecCCCCceeeeehh
Q 018851 178 KAATDLTRENLQKGDWKELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQM--------GFEEMPTNNFVESSFWN 249 (349)
Q Consensus 178 ~~~~~lt~e~l~sg~Wk~~~fk~yn~~~~~~~~~~g~~HPl~~~~~~ir~if~~m--------GF~e~~~~~~Ves~fwN 249 (349)
+...+++..++..++|.+.+.+ +++.||+....|..|||++++++|+++|.+| ||+|+.++++|+|++||
T Consensus 12 ~~~~~~~~~~~~~~~~~ni~~~--~~~~~~~~~~~g~~hPl~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~N 89 (415)
T 3cmq_A 12 GSVVELLGKSYPQDDHSNLTRK--VLTRVGRNLHNQQHHPLWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQN 89 (415)
T ss_dssp CSEEEETTEEEECCSSCCCCHH--HHTTTTCCGGGSTTCHHHHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHH
T ss_pred CCcEEECCeeeccCccccCChh--hhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHH
Confidence 3447889999999999988755 7889999999999999999999999999999 99999854899999999
Q ss_pred hhccCCCCCCCCCCCCCeeeecCCCCCCCCCHHHHHHHHHHhhcCCCCCCCcccccchhhhhccccCCCCchhHHHHHHH
Q 018851 250 FDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHESGGYGSRGYGYEWKREEANKNLLRTHTTAVSSRMLKA 329 (349)
Q Consensus 250 FDaLf~PqdHPARd~~DTFyl~~p~~~~~~p~~~~erVk~vHe~Gg~gS~Gw~Y~W~~~~a~~~vLRTHTTavs~r~L~~ 329 (349)
||+||+|+|||||++||||||++ ..|||||||++++|+|..
T Consensus 90 Fd~L~~p~dHpaR~~~Dtfyi~~---------------------------------------~~vLRThts~~~~~~l~~ 130 (415)
T 3cmq_A 90 FDSLLIPADHPSRKKGDNYYLNR---------------------------------------THMLRAHTSAHQWDLLHA 130 (415)
T ss_dssp TGGGTCCTTCGGGCGGGSCBSSS---------------------------------------SEEECSSGGGGHHHHHHT
T ss_pred HHHhCCCCCCCcccccceEEecC---------------------------------------CeEEcCCCcHHHHHHHHH
Confidence 99999999999999999999975 589999999999999973
Q ss_pred hhcCCCCCceEEecCceecC
Q 018851 330 LAEKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 330 l~~~~~~p~k~fsi~rVfR~ 349 (349)
+ +| |+|++|+||||
T Consensus 131 ---~--~~-k~~~~G~VyR~ 144 (415)
T 3cmq_A 131 ---G--LD-AFLVVGDVYRR 144 (415)
T ss_dssp ---T--CS-EEEEEEEEECC
T ss_pred ---C--CC-CEEEeeeEEec
Confidence 2 35 99999999997
No 8
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=99.94 E-value=1.1e-27 Score=232.99 Aligned_cols=106 Identities=32% Similarity=0.601 Sum_probs=98.4
Q ss_pred ccccccCCCCCCCCCCChHHHHHHHHHHHHhhCCceecCCCCceeeeehhhhccCCCCCCCCCCCCCeeeecCCCCCCCC
Q 018851 200 EYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTREL 279 (349)
Q Consensus 200 ~yn~~~~~~~~~~g~~HPl~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDaLf~PqdHPARd~~DTFyl~~p~~~~~~ 279 (349)
.+++++|+.....|..||+++++++|+++|.+|||+|+. ++.|++++||||+||+|+|||||++|||||+++
T Consensus 91 ~id~TLP~~~~~~G~~hp~~~~~~~Ir~if~~~Gf~ev~-~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i~e------- 162 (327)
T 3pco_A 91 TIDVSLPGRRIENGGLHPVTRTIDRIESFFGELGFTVAT-GPEIEDDYHNFDALNIPGHHPARADHDTFWFDT------- 162 (327)
T ss_dssp CCCTTSCCCCCCCCCCCHHHHHHHHHHHHHHTTTCBCCC-CCSEECTCCCCCTTTCCSSSHHHHHTTCCBSSS-------
T ss_pred CCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCeEEE-CCCccCCHHHHHhhCCCCCChhhcccccEEeCC-------
Confidence 366999999999999999999999999999999999996 799999999999999999999999999999974
Q ss_pred CHHHHHHHHHHhhcCCCCCCCcccccchhhhhccccCCCCchhHHHHHHHhhcCCCCCceEEecCceecC
Q 018851 280 PEDYVERVKRVHESGGYGSRGYGYEWKREEANKNLLRTHTTAVSSRMLKALAEKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 280 p~~~~erVk~vHe~Gg~gS~Gw~Y~W~~~~a~~~vLRTHTTavs~r~L~~l~~~~~~p~k~fsi~rVfR~ 349 (349)
..+|||||+++++|+|.. ..+|+|+|++|||||+
T Consensus 163 --------------------------------~~vLRThtsp~~lr~l~~----~~~pirifeiGrVyR~ 196 (327)
T 3pco_A 163 --------------------------------TRLLRTQTSGVQIRTMKA----QQPPIRIIAPGRVYRN 196 (327)
T ss_dssp --------------------------------SCEECSCTHHHHHHHHTT----CCSSCCBCCEECCBCS
T ss_pred --------------------------------CceecccCCHHHHHHHHh----CCCCeeEEeeccEEec
Confidence 579999999999999963 2369999999999996
No 9
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=99.93 E-value=6.6e-26 Score=222.51 Aligned_cols=120 Identities=33% Similarity=0.527 Sum_probs=104.4
Q ss_pred cccccCCCCCCCCCCChHHHHHHHHHHHHhhCCceecCCCCceeeeehhhhccCCCCCCCCCCCCCeeeecCCCCCCCCC
Q 018851 201 YNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELP 280 (349)
Q Consensus 201 yn~~~~~~~~~~g~~HPl~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDaLf~PqdHPARd~~DTFyl~~p~~~~~~p 280 (349)
++++.|+.....|..||+++++++||++|.+|||.|+. +|+|++++||||+|++|++||||+++|||||.+|.... .+
T Consensus 86 i~~tlP~~~~~~g~~hp~~~~~~~Ir~~f~~~Gf~Ev~-~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~~-~~ 163 (350)
T 1b7y_A 86 VDVSLPGASLFSGGLHPITLMERELVEIFRALGYQAVE-GPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRL-EG 163 (350)
T ss_dssp CCTTSCCCCCCCCBCCHHHHHHHHHHHHHHTTTCEECC-CCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCC-BC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEE-CcchhcchhHHHhhCCCCCCccccccccEEEcCccccc-cc
Confidence 56889999999999999999999999999999999997 89999999999999999999999999999999875421 11
Q ss_pred HHHHHHHHHHhhcCCCCCCCcccccchhhhhccccCCCCchhHHHHHHHhhcCCCCCceEEecCceecC
Q 018851 281 EDYVERVKRVHESGGYGSRGYGYEWKREEANKNLLRTHTTAVSSRMLKALAEKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 281 ~~~~erVk~vHe~Gg~gS~Gw~Y~W~~~~a~~~vLRTHTTavs~r~L~~l~~~~~~p~k~fsi~rVfR~ 349 (349)
+ +|+. .+...+|||||+++++|+|.. . .+|.|+|+||||||+
T Consensus 164 ~--------~~~~---------------~~~~~vLRt~tsp~llr~l~~--~--~~piriFEiGrVFR~ 205 (350)
T 1b7y_A 164 P--------LGEE---------------VEGRLLLRTHTSPMQVRYMVA--H--TPPFRIVVPGRVFRF 205 (350)
T ss_dssp T--------TSCB---------------CCSCEEECSSSTHHHHHHHHH--C--CSSEEEEEEEEEECC
T ss_pred c--------cccc---------------ccccceeeccchHHHHHHHHh--c--CCCeeEEEeeeEEEC
Confidence 1 4433 355789999999999999975 2 359999999999995
No 10
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=99.83 E-value=5.5e-23 Score=210.72 Aligned_cols=164 Identities=22% Similarity=0.273 Sum_probs=132.7
Q ss_pred hhhhcccccccccCCCcccc--cccccccccCCCCC--CCCCCChHHHHHHHHHHHHhhCCceecCCCCceeeeehhhhc
Q 018851 177 KKAATDLTRENLQKGDWKEL--EFKEYNFNAKGQPA--EGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDA 252 (349)
Q Consensus 177 ~~~~~~lt~e~l~sg~Wk~~--~fk~yn~~~~~~~~--~~g~~HPl~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDa 252 (349)
.+++.++|+..| +++|.-. .+|.|+++..++.. ..|..||+.++++++|++|.+|||+|+. ++.+++++||
T Consensus 5 ~~~~~~~tR~Di-~~~~DliEEvaR~yGyd~i~~~~~~~~g~~hp~~~~~~~Ir~~l~~lGF~Ev~-~~s~~s~~~n--- 79 (534)
T 2du3_A 5 PQKYRELAEKDF-EAAWKAGKEILAERSPNELYPRVGFSFGKEHPLFATIQRLREAYLSIGFSEVV-NPLIVEDVHV--- 79 (534)
T ss_dssp HHHHHHHHHHCH-HHHHHHGGGGSCCCCGGGSTTSSCCCCCCCCHHHHHHHHHHHHHHHTTCEECC-CCCEEETHHH---
T ss_pred hHHhccCChhhc-chhhHHHhhhhhccCCCCCCCccCCCCCCCCHHHHHHHHHHHHHHHCCCEEEe-CceEeChhhc---
Confidence 356677787776 5778655 78999999887766 8899999999999999999999999997 7899999999
Q ss_pred cCCCCC-CCCCCCCC-eeeecCCCC-----------------------------------CCCCCHHHHHHHHHHhhcCC
Q 018851 253 LFQPQQ-HPARDSHD-TFFLEEPST-----------------------------------TRELPEDYVERVKRVHESGG 295 (349)
Q Consensus 253 Lf~Pqd-HPARd~~D-TFyl~~p~~-----------------------------------~~~~p~~~~erVk~vHe~Gg 295 (349)
+||+ ||||++|| |||+.+|.. ......+++++|..+|++
T Consensus 80 --~p~~~Hpar~~~Dr~fyl~~~~~~~~g~~~~~~e~I~~~~G~~l~~~~l~~~~~~y~~~~~~~~~~~~~v~~vh~~-- 155 (534)
T 2du3_A 80 --KKQFGREALAVLDRCFYLATLPKPNVGISAEKIRQIEAITKREVDSKPLQEIFHRYKKGEIDGDDLSYLIAEVLDV-- 155 (534)
T ss_dssp --HHHHGGGHHHHHTTSCEEEECCCCCTTGGGTTTTTTSCCCCSSCCCSCTTTTTTHHHHSCCSGGGTTTTTTSSSCS--
T ss_pred --ccccccchhhhccceeeccCcccccccccchhhhhhhhhccccchhhhhhhhhhhhhccccccccccccccchhcc--
Confidence 8888 99999999 999975310 001114677888899988
Q ss_pred CCCCCccc--ccchh------hhhccccCCCCchhHHHHHHHhhcCCCCCceEEecCceecC
Q 018851 296 YGSRGYGY--EWKRE------EANKNLLRTHTTAVSSRMLKALAEKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 296 ~gS~Gw~Y--~W~~~------~a~~~vLRTHTTavs~r~L~~l~~~~~~p~k~fsi~rVfR~ 349 (349)
++|.||.. +|+.+ +++..+||||+++.....++.+..+..+|.|+|.+|+|||+
T Consensus 156 fds~~v~l~NPis~e~~~~~~~~~~svLRTsLlPgLL~~lr~N~~r~~~pvrLFEIG~VFr~ 217 (534)
T 2du3_A 156 DDITAVKILDEVFPEFKELKPISSTLTLRSHMTTGWFITLSHIADKLPLPIKLFSIDRCFRR 217 (534)
T ss_dssp GGGSHHHHHHTTCTTTTTCCCEEEEEEECSSHHHHHHHHHHTTTTTSCSSEEEEEEEEEECC
T ss_pred cccceeeecCCCChhhccccccccccccCccchhhHHHHHHHHHhCCCCCeeEEEEeeEEec
Confidence 79999998 89998 78899999999995555444443444579999999999985
No 11
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=99.83 E-value=7.7e-21 Score=182.14 Aligned_cols=108 Identities=30% Similarity=0.596 Sum_probs=98.0
Q ss_pred ccccccCCCCCCCCCCChHHHHHHHHHHHHhhCCceecCCCCceeeeehhhhccCCCCCCCCCCCCCeeeecCCCCCCCC
Q 018851 200 EYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTREL 279 (349)
Q Consensus 200 ~yn~~~~~~~~~~g~~HPl~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDaLf~PqdHPARd~~DTFyl~~p~~~~~~ 279 (349)
.++.+.|+.....|..||+.++++.||++|.++||.|+ ++++|++.+||||+|++|++||||+++|||||++
T Consensus 37 ~i~~tlp~~~~~~g~~~~~~~~~~~iR~~l~~~Gf~Ev-~~s~l~~~~~nf~~l~~~~~~par~~~d~~~l~e------- 108 (294)
T 2rhq_A 37 TIDVTLPSRQISIGSKHPLTRTVEEIEDLFLGLGYEIV-DGYEVEQDYYNFEALNLPKSHPARDMQDSFYITD------- 108 (294)
T ss_dssp CCCTTSCCCCCCCCCCCHHHHHHHHHHHHHHTTTCEEC-CCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBSSS-------
T ss_pred cCCccCCCcccCCCCCCHHHHHHHHHHHHHHHCCCEEE-cCcceeeehhhHHhhCCCCCccccccCCcEEEcC-------
Confidence 45578888888899999999999999999999999999 6899999999999999999999999999999963
Q ss_pred CHHHHHHHHHHhhcCCCCCCCcccccchhhhhccccCCCCchhHHHHHHHhhcCCCCCceEEecCceecC
Q 018851 280 PEDYVERVKRVHESGGYGSRGYGYEWKREEANKNLLRTHTTAVSSRMLKALAEKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 280 p~~~~erVk~vHe~Gg~gS~Gw~Y~W~~~~a~~~vLRTHTTavs~r~L~~l~~~~~~p~k~fsi~rVfR~ 349 (349)
..+|||||++...++|.... ..+|.|+|.||||||+
T Consensus 109 --------------------------------~~vLRtsl~p~ll~~l~~N~--~~~~~riFEiG~Vfr~ 144 (294)
T 2rhq_A 109 --------------------------------EILMRTHTSPVQARTMEKRN--GQGPVKIICPGKVYRR 144 (294)
T ss_dssp --------------------------------SEEECSSSHHHHHHHHHHTT--TCSCEEEEEEEEEECC
T ss_pred --------------------------------cceeeccCHHHHHHHHHhcC--CCCCccEEEEcCEEec
Confidence 57999999999999998653 2469999999999995
No 12
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=99.09 E-value=2e-10 Score=119.43 Aligned_cols=104 Identities=20% Similarity=0.122 Sum_probs=86.4
Q ss_pred ccCCCCCCCCCCChHHHHHHHHHHHHhhCCceecCCCCceeeeehhhhccCCCCCCCCCCCCCeeeecCCCCCCCCCHHH
Q 018851 204 NAKGQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDY 283 (349)
Q Consensus 204 ~~~~~~~~~g~~HPl~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDaLf~PqdHPARd~~DTFyl~~p~~~~~~p~~~ 283 (349)
+.|.. ...|..||..++.+.+|++|..|||+|+-+ ...++..||||+|+.|.+| +|+++|.+|-..
T Consensus 380 tlP~~-~~~g~~~~~~~~~~~ir~~l~~~Gf~Evit-ysf~s~~~~~~~l~~~~~~-----~~~v~L~NPis~------- 445 (589)
T 3l4g_B 380 TLPKT-YTIANQFPLNKLTELLRHDMAAAGFTEALT-FALCSQEDIADKLGVDISA-----TKAVHISNPKTA------- 445 (589)
T ss_dssp CCCCC-CCCCCCCHHHHHHHHHHHHHHHTTCEECCC-CSEECHHHHTGGGTSCTTS-----SCCCBBSSCSSG-------
T ss_pred cCCCc-cccCCCCHHHHHHHHHHHHHHHCCCEEEec-CcccCHHHHHHHhCCCCCC-----CCeEEEcCCCch-------
Confidence 44443 467889999999999999999999999975 4555888999999999988 489999987432
Q ss_pred HHHHHHHhhcCCCCCCCcccccchhhhhccccCCCCchhHHHHHHHhhcCCCCCceEEecCceecC
Q 018851 284 VERVKRVHESGGYGSRGYGYEWKREEANKNLLRTHTTAVSSRMLKALAEKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 284 ~erVk~vHe~Gg~gS~Gw~Y~W~~~~a~~~vLRTHTTavs~r~L~~l~~~~~~p~k~fsi~rVfR~ 349 (349)
...+||||+.+...+++....... .|.|+|.+|+|||+
T Consensus 446 ---------------------------e~svmRtsLlpgLL~~l~~N~~~~-~~vrlFEiG~Vf~~ 483 (589)
T 3l4g_B 446 ---------------------------EFQVARTTLLPGLLKTIAANRKMP-LPLKLFEISDIVIK 483 (589)
T ss_dssp ---------------------------GGSEECSCSHHHHHHHHHHTTTSC-SCEEEEEEEEEEEE
T ss_pred ---------------------------hHhHHHHHHHHHHHHHHHHHhcCC-CceEEEEeeeEEec
Confidence 258999999999999998654333 59999999999984
No 13
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=99.06 E-value=3.7e-10 Score=121.22 Aligned_cols=103 Identities=15% Similarity=0.112 Sum_probs=83.9
Q ss_pred ccCC-CCCCCCCCChHHHHHHHHHHHHhhCCceecCCCCceeeeehhhhccCCCCCCCCCCCCCeeeecCCCCCCCCCHH
Q 018851 204 NAKG-QPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPED 282 (349)
Q Consensus 204 ~~~~-~~~~~g~~HPl~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDaLf~PqdHPARd~~DTFyl~~p~~~~~~p~~ 282 (349)
+.|. .....|..||..++.+++|++|..|||.|+-+.+++..++| +.|+ |+++| +++|.+|-..
T Consensus 480 tlP~~~~~~~g~~~~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~--~~l~-~~~~~------~v~L~NPis~------ 544 (795)
T 2rhq_B 480 SLPVFGEVTSGELTDRQHKTRTLKETLEGAGLNQAITYSLVSKDHA--KDFA-LQERP------TISLLMPMSE------ 544 (795)
T ss_dssp CCCCCSSCCCCCCCHHHHHHHHHHHHHHHTTCEECCCCSEECTTTT--TTTC-SSCCC------CEECSSCSCT------
T ss_pred cCCCccccCCCCCCHHHHHHHHHHHHHHHCCCEEEecCCccCHHHH--HhhC-CCCCc------eEEEcCCCch------
Confidence 4454 45577899999999999999999999999998889977755 6665 64332 7999987432
Q ss_pred HHHHHHHHhhcCCCCCCCcccccchhhhhccccCCCCchhHHHHHHHhhcCCCCCceEEecCceecC
Q 018851 283 YVERVKRVHESGGYGSRGYGYEWKREEANKNLLRTHTTAVSSRMLKALAEKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 283 ~~erVk~vHe~Gg~gS~Gw~Y~W~~~~a~~~vLRTHTTavs~r~L~~l~~~~~~p~k~fsi~rVfR~ 349 (349)
...+||||+++...++|.....+..+|.|+|.+|+|||+
T Consensus 545 ----------------------------e~svLRtsLlpgLL~~l~~N~~r~~~~vrlFEiG~Vf~~ 583 (795)
T 2rhq_B 545 ----------------------------AHATLRQSLLPHLIEATAYNVARKNKDVRLYEIGRVFFG 583 (795)
T ss_dssp ----------------------------TSSEECSCSHHHHHHHHHHHHHTTCCCEEEEEEEEEEEC
T ss_pred ----------------------------hhhhhhhccHHHHHHHHHHHhcCCCCCeEEEEEeeEEec
Confidence 157999999999999998765555679999999999984
No 14
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.05 E-value=3.6e-10 Score=107.50 Aligned_cols=96 Identities=18% Similarity=0.245 Sum_probs=81.8
Q ss_pred CCCCCChHHHHHHHHHHHHhhCCceecCCCCceeeeehhhhccCCCCCCCCCCCCCeeeecCCCCCCCCCHHHHHHHHHH
Q 018851 211 EGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRV 290 (349)
Q Consensus 211 ~~g~~HPl~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDaLf~PqdHPARd~~DTFyl~~p~~~~~~p~~~~erVk~v 290 (349)
..|..||..++++.||++|.++||.|+.| |.+++. .+|+.++.|.+||.+ .|+||+++
T Consensus 72 ~~g~~~~~~~i~~~ir~~l~~~Gf~EV~T-p~l~~~-~~~~~~~~~~~~p~~--~~~~~~~~------------------ 129 (290)
T 3qtc_A 72 AEERENYLGKLEREITRFFVDRGFLEIKS-PILIPL-EYIERMGIDNDTELS--KQIFRVDK------------------ 129 (290)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHTTCEEECC-CSEEET-HHHHHTTCCTTSSGG--GGCCEETT------------------
T ss_pred ccccccHHHHHHHHHHHHHHHCCCEEEEC-CceeeH-HHHHhcCCCcCCchh--hhheeeCC------------------
Confidence 45889999999999999999999999974 777776 589999999999976 57888864
Q ss_pred hhcCCCCCCCcccccchhhhhccccCCCCchhHHHHHHHhhcCCCCCceEEecCceecC
Q 018851 291 HESGGYGSRGYGYEWKREEANKNLLRTHTTAVSSRMLKALAEKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 291 He~Gg~gS~Gw~Y~W~~~~a~~~vLRTHTTavs~r~L~~l~~~~~~p~k~fsi~rVfR~ 349 (349)
..+|||++|+...+++..+......|.|+|.||+|||.
T Consensus 130 ---------------------~~~LR~slsp~L~~~l~~n~~~~~~p~rlfeiG~vFR~ 167 (290)
T 3qtc_A 130 ---------------------NFCLRPMLTPNLYNYLRKLDRALPDPIKIFEIGPCYRK 167 (290)
T ss_dssp ---------------------TEEECSCSHHHHHHHHHHHTTTSCSSEEEEEEEEEECC
T ss_pred ---------------------CeeEcccChHHHHHHHHHhhccCCCCeEEEEEcCEEec
Confidence 47999999999999887653333469999999999995
No 15
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.00 E-value=8.1e-10 Score=105.48 Aligned_cols=95 Identities=19% Similarity=0.284 Sum_probs=71.1
Q ss_pred CCCCCChHHHHHHHHHHHHhhCCceecCCCCceeeeehhhhccCCCCCCCCCCCCC-eeeecCCCCCCCCCHHHHHHHHH
Q 018851 211 EGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHD-TFFLEEPSTTRELPEDYVERVKR 289 (349)
Q Consensus 211 ~~g~~HPl~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDaLf~PqdHPARd~~D-TFyl~~p~~~~~~p~~~~erVk~ 289 (349)
..|+.||+.++.+.++++|.++||.|+. +|.+++... |+....+.+| ++.+ +|++++
T Consensus 66 ~~g~~h~~~~l~~~ir~~~~~~Gf~EV~-tP~Le~~~l-~~~~g~~~~~---~m~~~~npl~e----------------- 123 (288)
T 3dsq_A 66 TVKHRPALLELEEKLAKALHQQGFVQVV-TPTIITKSA-LAKMTIGEDH---PLFSQVFWLDG----------------- 123 (288)
T ss_dssp HTTSSCHHHHHHHHHHHHHHTTTCEECC-CCSEEEHHH-HHTTSSCC-----CCTTTSCEEET-----------------
T ss_pred cCCCcCHHHHHHHHHHHHHHHCCCEEEE-CCeeecHHH-HhhcCCCccc---ccEEeeccccc-----------------
Confidence 4589999999999999999999999997 688877544 3333333344 4443 456653
Q ss_pred HhhcCCCCCCCcccccchhhhhccccCCCCchhHHHHHHHhhcCCCCCceEEecCceecC
Q 018851 290 VHESGGYGSRGYGYEWKREEANKNLLRTHTTAVSSRMLKALAEKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 290 vHe~Gg~gS~Gw~Y~W~~~~a~~~vLRTHTTavs~r~L~~l~~~~~~p~k~fsi~rVfR~ 349 (349)
..+||||+++...+++..+......|.|+|.+|+|||+
T Consensus 124 ----------------------~~~LRp~l~p~l~~~~r~~~~~~~~PlrlfeiG~vFR~ 161 (288)
T 3dsq_A 124 ----------------------KKCLRPMLAPNLYTLWRELERLWDKPIRIFEIGTCYRK 161 (288)
T ss_dssp ----------------------TEEECSCSHHHHHHHHHHHTTTSCSCEEEEEEEEEECS
T ss_pred ----------------------chhhhhcChHHHHHHHHHHHhCCCCCEEEEEEeeEEec
Confidence 46999999999888776553334579999999999995
No 16
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=98.66 E-value=2.5e-08 Score=106.92 Aligned_cols=91 Identities=20% Similarity=0.272 Sum_probs=76.6
Q ss_pred CCChHHHHHHHHHHHHhhCCceecCCCCceeeeehhhhccCCCCCCCCCCCCCeeeecCCCCCCCCCHHHHHHHHHHhhc
Q 018851 214 HLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHES 293 (349)
Q Consensus 214 ~~HPl~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDaLf~PqdHPARd~~DTFyl~~p~~~~~~p~~~~erVk~vHe~ 293 (349)
..||..++.+++|++|..+||.|+-+.+++..++| +.| |++ +|+++|.+|-..
T Consensus 487 ~~~~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~--~~l--~~~------~~~v~L~NPis~----------------- 539 (785)
T 1b7y_B 487 GVEAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDA--RRF--RLD------PPRLLLLNPLAP----------------- 539 (785)
T ss_dssp STTHHHHHHHHHHHHHHHHTCEECCCCSEECTTHH--HHT--TCC------CCSCEESSCSST-----------------
T ss_pred cCCHHHHHHHHHHHHHHHCCCEEEecCcccCHHHH--Hhc--CCC------CCeEEEcCCCch-----------------
Confidence 78999999999999999999999888899988766 543 542 678999987433
Q ss_pred CCCCCCCcccccchhhhhccccCCCCchhHHHHHHHhhcCC-CCCceEEecCceec
Q 018851 294 GGYGSRGYGYEWKREEANKNLLRTHTTAVSSRMLKALAEKP-FAPKKVFLHRSCFQ 348 (349)
Q Consensus 294 Gg~gS~Gw~Y~W~~~~a~~~vLRTHTTavs~r~L~~l~~~~-~~p~k~fsi~rVfR 348 (349)
...+||||+.+...+++.....+. .+|.|+|.+|+|||
T Consensus 540 -----------------d~svLRtsLlpgLL~~l~~N~~r~~~~~vrlFEiG~Vf~ 578 (785)
T 1b7y_B 540 -----------------EKAALRTHLFPGLVRVLKENLDLDRPERALLFEVGRVFR 578 (785)
T ss_dssp -----------------TSSEECSCSHHHHHHHHHHHHHHSCCSCEEEEEEEEEES
T ss_pred -----------------hhhhhhhhhHHHHHHHHHHHhhcCCCCCeEEEEEeeeec
Confidence 257999999999999998765445 57999999999996
No 17
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=98.22 E-value=1.4e-06 Score=79.13 Aligned_cols=90 Identities=18% Similarity=0.271 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHhhCCceecCCCCceeeeehhhhccCCCCCCCCCCCCCeeeecCCCCCCCCCHHHHHHHHHHhhcCCCC
Q 018851 218 LLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHESGGYG 297 (349)
Q Consensus 218 l~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDaLf~PqdHPARd~~DTFyl~~p~~~~~~p~~~~erVk~vHe~Gg~g 297 (349)
..++.+.+|++|..+||.|+-+.+++..+ .||.|..+.+ +++..|.+|-..
T Consensus 6 ~~~~~~~ir~~l~~~G~~Evitysf~~~~--~~~~~~~~~~------~~~v~l~NPls~--------------------- 56 (213)
T 3ig2_A 6 SNKLQNLVAEQLVGCGFNEILNNSLTRAA--YYDGLESYPS------KNLVMLLNPLSA--------------------- 56 (213)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECGG--GGTTCSSSCG------GGCEEBSSGGGC---------------------
T ss_pred HHHHHHHHHHHHHHCCCeEEeccccCCHH--HHHhhcccCc------CCeEEEeCCcch---------------------
Confidence 45789999999999999999888888654 5888865432 367888887432
Q ss_pred CCCcccccchhhhhccccCCCCchhHHHHHHHhhcCCCCCceEEecCceecC
Q 018851 298 SRGYGYEWKREEANKNLLRTHTTAVSSRMLKALAEKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 298 S~Gw~Y~W~~~~a~~~vLRTHTTavs~r~L~~l~~~~~~p~k~fsi~rVfR~ 349 (349)
...+|||+..+...+++.....+..+++|+|-+|+||++
T Consensus 57 -------------e~~vmRtsLlpgLL~~~~~N~~r~~~~v~lFEiG~Vf~~ 95 (213)
T 3ig2_A 57 -------------DLNCMRQTLLFGGLESIAHNANRKNADLKFFEFGNCYHF 95 (213)
T ss_dssp -------------SCCEECSCSHHHHHHHHHHC------CCEEEEEEEEEEE
T ss_pred -------------hHHHHHHHhHHHHHHHHHHHhcCCCCCeeEEEeeeEEec
Confidence 258999999999999998654445568999999999973
No 18
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=98.08 E-value=6.1e-06 Score=74.99 Aligned_cols=90 Identities=16% Similarity=0.214 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHhhCCceecCCCCceeeeehhhhccCCCCCCCCCCCCCeeeecCCCCCCCCCHHHHHHHHHHhhcCCCC
Q 018851 218 LLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHESGGYG 297 (349)
Q Consensus 218 l~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDaLf~PqdHPARd~~DTFyl~~p~~~~~~p~~~~erVk~vHe~Gg~g 297 (349)
..++.+.+|++|..+||.|+-+.+++..+ +||.|..+.+ .++..|.+|-..
T Consensus 6 ~~~~~~~ir~~L~~~G~~Evitysf~s~~--~~~~~~~~~~------~~~v~l~NPls~--------------------- 56 (213)
T 3ica_A 6 RYKWQTVVSEQLVGAGFNEILNNSLTAGS--YYEGLKSHPR------EMAVELMNPLSQ--------------------- 56 (213)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEEGG--GGTTCSSSCG------GGCCBCSSBSCS---------------------
T ss_pred HHHHHHHHHHHHHHCCCceeeeccCCCHH--HHhhhcccCc------CCeEEecCCccH---------------------
Confidence 56789999999999999999888777554 7888865422 256777776432
Q ss_pred CCCcccccchhhhhccccCCCCchhHHHHHHHhhcCCCCCceEEecCceecC
Q 018851 298 SRGYGYEWKREEANKNLLRTHTTAVSSRMLKALAEKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 298 S~Gw~Y~W~~~~a~~~vLRTHTTavs~r~L~~l~~~~~~p~k~fsi~rVfR~ 349 (349)
...+|||+..+.-.+++.....+..++.|+|-||+||++
T Consensus 57 -------------e~~vmRtsLlpgLL~~~~~N~~r~~~~~~lFEiG~Vf~~ 95 (213)
T 3ica_A 57 -------------ELNCMRQTLLFGGLETLSHNLRRKHLSLYLFEWGKCYRF 95 (213)
T ss_dssp -------------SEEEECSSSHHHHHHHHHHHHTTTCSEEEEEEEEEEEEE
T ss_pred -------------HHHHHHHHhHHHHHHHHHHHHcCCCCCeeEEEeeeEEec
Confidence 268999999999999998765556567999999999973
No 19
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=97.88 E-value=1.7e-05 Score=58.08 Aligned_cols=48 Identities=23% Similarity=0.441 Sum_probs=45.6
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEE
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQ 49 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~ 49 (349)
.|.+||..+.+++.+.+.+.+|+.+|++.++|+.++++|++||+|.++
T Consensus 11 ~e~~lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~KGLI~le 58 (59)
T 2xvc_A 11 TERELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIAVE 58 (59)
T ss_dssp CHHHHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cHHHHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCeecc
Confidence 478999999999999999999999999999999999999999999986
No 20
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=97.84 E-value=2.3e-05 Score=74.66 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhhCCceecCCCCceeeeehhhhccCCCCCCC-----CCCCCC
Q 018851 218 LLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHP-----ARDSHD 266 (349)
Q Consensus 218 l~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDaLf~PqdHP-----ARd~~D 266 (349)
-+++++.||++|.++||.|+. .|.+++++ | |.+|| ||..++
T Consensus 18 rs~i~~~ir~~f~~~GF~EVe-TP~l~~~~---~----~~~~~~~~e~a~~f~~ 63 (294)
T 1nnh_A 18 QTKILEYMTDFFVKEGFKWLL-PVIISPIT---D----PLWPDPAGEGMEPAEV 63 (294)
T ss_dssp HHHHHHHHHHHHHHTTCEEEC-CCCEESCC---C----CCCSCTTCCCCCCCEE
T ss_pred HHHHHHHHHHHHHHCCCEEEE-CCEEEEcc---c----hhccCCCCCcceeEEE
Confidence 467889999999999999998 59998883 3 77999 655444
No 21
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=97.77 E-value=0.00011 Score=60.10 Aligned_cols=71 Identities=15% Similarity=0.140 Sum_probs=59.4
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEe----eeeEEEEeChhHHHHhhcCChHH
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQD----IKRETWVLTGEGKKYAAEGSPEV 73 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~----~~~~~~~LTeEG~~~l~~G~PE~ 73 (349)
.+..||..|...+. .+..++|+.+|++...|.+.++.|+++|+|.... .....+.||++|++++....+..
T Consensus 39 ~~~~iL~~l~~~~~-~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~ 113 (140)
T 2nnn_A 39 TQWAALVRLGETGP-CPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELEAGLAAA 113 (140)
T ss_dssp HHHHHHHHHHHHSS-BCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHHHHHHHHH
Confidence 36789999977665 6788999999999999999999999999998853 33457899999999998766654
No 22
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=97.75 E-value=9e-05 Score=58.25 Aligned_cols=69 Identities=22% Similarity=0.236 Sum_probs=56.8
Q ss_pred HHHHHHHHHhhCCCCCChHHH----HHHhCCCHHHHHHHHHHhccCCcEEEEee-eeEEEEeChhHHHHhhcCCh
Q 018851 2 AEEAILGYLEKNEQISDSGNF----AAERGFDHNDVVNVIKSLHGFRYIDAQDI-KRETWVLTGEGKKYAAEGSP 71 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~l----a~~~g~~~~~v~~~~~~L~~kgli~~~~~-~~~~~~LTeEG~~~l~~G~P 71 (349)
.|..||..|...+. .+..++ |+.+|++...|.+.++.|+.+|+|..... ....+.||++|+++++.-.+
T Consensus 9 ~q~~iL~~l~~~~~-~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~~~~~~~ 82 (99)
T 1tbx_A 9 PEAIVLAYLYDNEG-IATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFAISLKT 82 (99)
T ss_dssp HHHHHHHHHTTCTT-CBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-cCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHHHHHHHH
Confidence 46789999987665 567788 88899999999999999999999987544 34588999999998865433
No 23
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=97.74 E-value=0.00015 Score=59.37 Aligned_cols=72 Identities=18% Similarity=0.099 Sum_probs=61.1
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee----eeEEEEeChhHHHHh-hcCChHHH
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI----KRETWVLTGEGKKYA-AEGSPEVQ 74 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~----~~~~~~LTeEG~~~l-~~G~PE~r 74 (349)
.+..||..|...+. .+..++|+.+|++...|.+.++.|+.+|+|..... ....+.||++|++++ ..-.+...
T Consensus 32 ~~~~iL~~l~~~~~-~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~~~~~~~~~~ 108 (142)
T 3bdd_A 32 TRYSILQTLLKDAP-LHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREALITNPSAHHQ 108 (142)
T ss_dssp HHHHHHHHHHHHCS-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHTTSCCHHHH
T ss_pred HHHHHHHHHHhCCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHHHHHHH
Confidence 36678999987665 67889999999999999999999999999988753 355799999999999 88877644
No 24
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=97.74 E-value=1.9e-05 Score=79.25 Aligned_cols=80 Identities=10% Similarity=0.073 Sum_probs=62.1
Q ss_pred CCCChHHHHHHHHHHHHhhCCceecCCCCceeeeehhhhccCCCCCCCCCCCCCeeeecCCCCCCCCCHHHHHHHHHHhh
Q 018851 213 GHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHE 292 (349)
Q Consensus 213 g~~HPl~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDaLf~PqdHPARd~~DTFyl~~p~~~~~~p~~~~erVk~vHe 292 (349)
...|+-.++++.||++|.++||.|+. .|.++++ ..||||++.+|+|.+.
T Consensus 133 ~~~~~rs~i~~~ir~~f~~~gF~eVe-TP~l~~~----------~~e~~~~~f~~~~~~~-------------------- 181 (434)
T 1x54_A 133 AIMKVKETLIMAAREWLLKDGWHEVF-PPILVTG----------AVEGGATLFKLKYFDK-------------------- 181 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECC-CCSEESC----------CSSCGGGCCEEEETTE--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEe-CcEEEee----------cCCCCceeEEEeecCC--------------------
Confidence 44677788999999999999999998 4899866 6899999999988753
Q ss_pred cCCCCCCCcccccchhhhhccccCCCCchhHHHHHHHhhcCCCCCceEEecCceecC
Q 018851 293 SGGYGSRGYGYEWKREEANKNLLRTHTTAVSSRMLKALAEKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 293 ~Gg~gS~Gw~Y~W~~~~a~~~vLRTHTTavs~r~L~~l~~~~~~p~k~fsi~rVfR~ 349 (349)
...|| +++.....+ ++. .+.|+|.|++|||.
T Consensus 182 -------------------~~~Lr--~Spel~~~~--~~~---g~~rvf~ig~~FR~ 212 (434)
T 1x54_A 182 -------------------YAYLS--QSAQLYLEA--AIF---GLEKVWSLTPSFRA 212 (434)
T ss_dssp -------------------EEEEC--SCSHHHHHH--HHH---HHSEEEEEEEEECC
T ss_pred -------------------cEEec--cChHHHHHH--Hhc---CccceEEEecceec
Confidence 46788 444443322 222 27899999999995
No 25
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=97.69 E-value=6.3e-05 Score=60.70 Aligned_cols=68 Identities=13% Similarity=0.140 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhCCCCCChHHHHH-HhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHHHhhcCChHH
Q 018851 2 AEEAILGYLEKNEQISDSGNFAA-ERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAAEGSPEV 73 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~-~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~l~~G~PE~ 73 (349)
.|..||..|...+. .+..++|+ ..+++.+.|.+.++.|+.+|+|. ..... +.||++|+..++.+.|--
T Consensus 17 ~QfsiL~~L~~~~~-~t~~~Lae~~l~~drstvsrnl~~L~r~GlVe-~~~~D--l~LT~~G~~~l~~a~~~W 85 (95)
T 1bja_A 17 KTATILITIAKKDF-ITAAEVREVHPDLGNAVVNSNIGVLIKKGLVE-KSGDG--LIITGEAQDIISNAATLY 85 (95)
T ss_dssp HHHHHHHHHHHSTT-BCHHHHHHTCTTSCHHHHHHHHHHHHTTTSEE-EETTE--EEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHhcccHHHHHHHHHHHHHCCCee-cCCCC--eeeCHhHHHHHHHHHHHH
Confidence 47789999988885 67889999 99999999999999999999999 32222 999999999999988754
No 26
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=97.68 E-value=0.00022 Score=58.12 Aligned_cols=71 Identities=14% Similarity=0.134 Sum_probs=59.2
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEe----eeeEEEEeChhHHHHhhcCChHH
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQD----IKRETWVLTGEGKKYAAEGSPEV 73 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~----~~~~~~~LTeEG~~~l~~G~PE~ 73 (349)
.+..||..|...+. .+..++|+.+|++...|.+.+..|+.+|+|.... .....+.||++|++++....+..
T Consensus 30 ~~~~iL~~l~~~~~-~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~~~~~~~ 104 (138)
T 3bpv_A 30 AQVACLLRIHREPG-IKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIPLILKVE 104 (138)
T ss_dssp HHHHHHHHHHHSTT-CBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHHHHHHHHH
Confidence 36789999987765 5778999999999999999999999999998854 33456899999999998766543
No 27
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=97.66 E-value=9.8e-05 Score=61.63 Aligned_cols=73 Identities=15% Similarity=0.183 Sum_probs=56.1
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeee----eEEEEeChhHHHHhhcCChHHH
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIK----RETWVLTGEGKKYAAEGSPEVQ 74 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~----~~~~~LTeEG~~~l~~G~PE~r 74 (349)
.|..||..|...+...+..+||+.+++++..|.+.+..|+.+|||..+... ...+.||++|+++++.-.+...
T Consensus 40 ~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~ 116 (150)
T 3fm5_A 40 RSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDDAKARVD 116 (150)
T ss_dssp HHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHHHHHHHHH
Confidence 367899999765543577899999999999999999999999999875443 3358999999999987666444
No 28
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=97.64 E-value=0.00016 Score=59.40 Aligned_cols=71 Identities=14% Similarity=0.145 Sum_probs=58.7
Q ss_pred HHHHHHHHH-hhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEe----eeeEEEEeChhHHHHhhcCChHH
Q 018851 2 AEEAILGYL-EKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQD----IKRETWVLTGEGKKYAAEGSPEV 73 (349)
Q Consensus 2 ~e~~iL~~L-~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~----~~~~~~~LTeEG~~~l~~G~PE~ 73 (349)
.+..||..| ...+. .+..++|+.+|++...|.+.++.|+.+|+|.... .....+.||++|++++..-.+..
T Consensus 38 ~~~~iL~~l~~~~~~-~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~ 113 (146)
T 2fbh_A 38 ARWLVLLHLARHRDS-PTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIADIEAIA 113 (146)
T ss_dssp THHHHHHHHHHCSSC-CBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC-CCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHHHHHHHHH
Confidence 367899999 55554 6788999999999999999999999999998875 33457899999999998765543
No 29
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=97.64 E-value=6.2e-05 Score=58.70 Aligned_cols=64 Identities=22% Similarity=0.285 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHH-HHHHHHHHhccCCcEEEEeeeeEEEEeChhHHHHh
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHN-DVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYA 66 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~-~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~l 66 (349)
...+||..|...+. .+..++|+.+|++.. +|.+.+..|+..|+|.......-.|.||+.|++.+
T Consensus 12 ~~~~IL~~Lk~~g~-~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~~~~gRP~w~LT~~g~~~~ 76 (79)
T 1xmk_A 12 IKEKICDYLFNVSD-SSALNLAKNIGLTKARDINAVLIDMERQGDVYRQGTTPPIWHLTDKKRERM 76 (79)
T ss_dssp HHHHHHHHHHHTCC-EEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEECSSSCEEEECHHHHTTT
T ss_pred HHHHHHHHHHHcCC-cCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEecCCCCCCeEeCHhHHhHh
Confidence 46789999999887 678999999999999 99999999999999985544334999999998754
No 30
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=97.63 E-value=0.00011 Score=60.81 Aligned_cols=87 Identities=16% Similarity=0.138 Sum_probs=64.9
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee----eeEEEEeChhHHHHhhcCChHHHHHH
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI----KRETWVLTGEGKKYAAEGSPEVQLFL 77 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~----~~~~~~LTeEG~~~l~~G~PE~rl~~ 77 (349)
.|..||..|...+. .+..++|+.++++++.|.+.+..|+.+|+|+.... -...+.||++|+++++.-.+...-+.
T Consensus 37 ~q~~vL~~l~~~~~-~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~~~~ 115 (140)
T 3hsr_A 37 TGYIVLMAIENDEK-LNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPLAEISVKVF 115 (140)
T ss_dssp HHHHHHHHSCTTCE-EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-cCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHHHHHHHHHHHH
Confidence 36778999976665 56789999999999999999999999999987643 34478999999999988666544332
Q ss_pred hcCcCCCCCHHHHHh
Q 018851 78 AVPAEGSISKDELQK 92 (349)
Q Consensus 78 ~l~~~g~~~~~el~~ 92 (349)
..- .++-+|+..
T Consensus 116 ~~~---~l~~~e~~~ 127 (140)
T 3hsr_A 116 NEF---NISEREASD 127 (140)
T ss_dssp HTS---CCCHHHHHH
T ss_pred Hhc---CCCHHHHHH
Confidence 221 255555543
No 31
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=97.62 E-value=0.00016 Score=59.19 Aligned_cols=72 Identities=11% Similarity=0.142 Sum_probs=59.1
Q ss_pred HHHHHHHHHhhCCC-CCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee----eeEEEEeChhHHHHhhcCChHH
Q 018851 2 AEEAILGYLEKNEQ-ISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI----KRETWVLTGEGKKYAAEGSPEV 73 (349)
Q Consensus 2 ~e~~iL~~L~~~~~-~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~----~~~~~~LTeEG~~~l~~G~PE~ 73 (349)
.+..||..|...+. ..+..++|+.+|++...|.+.++.|+.+|+|..... ....+.||++|+++++.-.+..
T Consensus 35 ~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~~~~~~~~ 111 (141)
T 3bro_A 35 TQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLETIILSYM 111 (141)
T ss_dssp HHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHHHHHHHHH
Confidence 36778999987662 257889999999999999999999999999988653 3447899999999987766643
No 32
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=97.61 E-value=0.00012 Score=60.41 Aligned_cols=72 Identities=21% Similarity=0.134 Sum_probs=59.2
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee----eeEEEEeChhHHHHhhcCChHHH
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI----KRETWVLTGEGKKYAAEGSPEVQ 74 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~----~~~~~~LTeEG~~~l~~G~PE~r 74 (349)
.|..||..|...+. .+..+||+.+|++.+.|.+.+..|+.+|+|..... -...+.||++|+++++.-.+...
T Consensus 38 ~~~~iL~~l~~~~~-~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~ 113 (143)
T 3oop_A 38 EQWSVLEGIEANEP-ISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTELRDIVE 113 (143)
T ss_dssp HHHHHHHHHHHHSS-EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-cCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHHHHHHHHH
Confidence 36788999987665 56789999999999999999999999999987643 24478999999999987665443
No 33
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=97.59 E-value=0.00025 Score=58.38 Aligned_cols=70 Identities=9% Similarity=0.039 Sum_probs=58.6
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee----eeEEEEeChhHHHHhhcCChHH
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI----KRETWVLTGEGKKYAAEGSPEV 73 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~----~~~~~~LTeEG~~~l~~G~PE~ 73 (349)
.+..||..|. .+. .+..++|+.+|++...|.+.+..|+.+|+|..... ....+.||++|+++++...+..
T Consensus 38 ~~~~iL~~l~-~~~-~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~~~~~ 111 (146)
T 2gxg_A 38 LDFLVLRATS-DGP-KTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFNKGIEIY 111 (146)
T ss_dssp HHHHHHHHHT-TSC-BCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-cCC-cCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHHHHHHHHH
Confidence 3678899998 555 67889999999999999999999999999987653 2457899999999998766543
No 34
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=97.59 E-value=0.00027 Score=58.94 Aligned_cols=87 Identities=13% Similarity=0.199 Sum_probs=66.3
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee----eeEEEEeChhHHHHhhcCChHHHHHH
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI----KRETWVLTGEGKKYAAEGSPEVQLFL 77 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~----~~~~~~LTeEG~~~l~~G~PE~rl~~ 77 (349)
.+..||..|...+. .+..++|+.+|++...|.+.+..|+.+|+|..... ....+.||++|+++++.-.+...-+.
T Consensus 48 ~~~~iL~~l~~~~~-~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~~~~ 126 (153)
T 2pex_A 48 PQYLVMLVLWETDE-RSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRSKAGAVPEQVF 126 (153)
T ss_dssp HHHHHHHHHHHSCS-EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGGGSTTHHHHHH
T ss_pred HHHHHHHHHHhCCC-cCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHHHHHHHHHHHH
Confidence 36778999987765 56789999999999999999999999999987643 33468999999999998887655443
Q ss_pred hcCcCCCCCHHHHHh
Q 018851 78 AVPAEGSISKDELQK 92 (349)
Q Consensus 78 ~l~~~g~~~~~el~~ 92 (349)
.. ..++-+|+..
T Consensus 127 ~~---~~l~~~e~~~ 138 (153)
T 2pex_A 127 CA---SACSLDELRQ 138 (153)
T ss_dssp HH---HTCCHHHHHH
T ss_pred hc---cCCCHHHHHH
Confidence 32 1255555543
No 35
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=97.58 E-value=0.00014 Score=59.55 Aligned_cols=70 Identities=10% Similarity=0.031 Sum_probs=59.3
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee----eeEEEEeChhHHHHhhcCChHH
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI----KRETWVLTGEGKKYAAEGSPEV 73 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~----~~~~~~LTeEG~~~l~~G~PE~ 73 (349)
+..||..|...+. .+..++|+.+|++.+.|.+.++.|+.+|+|..... ....+.||++|++++..-.+..
T Consensus 36 ~~~iL~~l~~~~~-~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~ 109 (138)
T 1jgs_A 36 QFKVLCSIRCAAC-ITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCHQLV 109 (138)
T ss_dssp HHHHHHHHHHHSS-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHHHHHHHHH
Confidence 6678988887665 57889999999999999999999999999988643 3447899999999998877765
No 36
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=97.57 E-value=0.00014 Score=59.85 Aligned_cols=86 Identities=17% Similarity=0.200 Sum_probs=67.1
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee----eeEEEEeChhHHHHhhcCChHHHHHHh
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI----KRETWVLTGEGKKYAAEGSPEVQLFLA 78 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~----~~~~~~LTeEG~~~l~~G~PE~rl~~~ 78 (349)
+..||..|...+. .+..++|+.+|++...|.+.++.|+.+|+|..... ....+.||++|++++..-.+...-+..
T Consensus 39 ~~~iL~~l~~~~~-~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~~~~~ 117 (142)
T 2bv6_A 39 QFLVLTILWDESP-VNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPELSNASDKVAS 117 (142)
T ss_dssp HHHHHHHHHHSSE-EEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHcCC-cCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHHHHHHHHHHHHHH
Confidence 6778999987765 56789999999999999999999999999988653 345889999999999888776554433
Q ss_pred cCcCCCCCHHHHHh
Q 018851 79 VPAEGSISKDELQK 92 (349)
Q Consensus 79 l~~~g~~~~~el~~ 92 (349)
.- .++-+|+..
T Consensus 118 ~~---~l~~~e~~~ 128 (142)
T 2bv6_A 118 AS---SLSQDEVKE 128 (142)
T ss_dssp HT---TCCHHHHHH
T ss_pred Hh---CCCHHHHHH
Confidence 22 255555543
No 37
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=97.57 E-value=0.00022 Score=60.48 Aligned_cols=71 Identities=13% Similarity=0.105 Sum_probs=60.2
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeee----eEEEEeChhHHHHhhcCChHH
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIK----RETWVLTGEGKKYAAEGSPEV 73 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~----~~~~~LTeEG~~~l~~G~PE~ 73 (349)
.+..||..|...+. .+..+||+.+|++++.|.+.+..|+.+|||...... ...+.||++|+++++.-.+..
T Consensus 47 ~q~~iL~~l~~~~~-~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~~ 121 (162)
T 3k0l_A 47 PQFTALSVLAAKPN-LSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQCNQVV 121 (162)
T ss_dssp HHHHHHHHHHHCTT-CCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHHHHHHHH
Confidence 36789999988776 678899999999999999999999999999876542 457899999999998766643
No 38
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=97.57 E-value=0.00023 Score=58.31 Aligned_cols=72 Identities=19% Similarity=0.159 Sum_probs=59.2
Q ss_pred HHHHHHHHHhhCC-CCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee----eeEEEEeChhHHHHhhcCChHH
Q 018851 2 AEEAILGYLEKNE-QISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI----KRETWVLTGEGKKYAAEGSPEV 73 (349)
Q Consensus 2 ~e~~iL~~L~~~~-~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~----~~~~~~LTeEG~~~l~~G~PE~ 73 (349)
.+..||..|...+ ...+..++|+.+|++++.|.+.+..|+.+|+|..... -...+.||++|+++++.-.+..
T Consensus 32 ~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~ 108 (139)
T 3eco_A 32 EQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFTSIF 108 (139)
T ss_dssp HHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHHHHHHHH
Confidence 3678899998765 2357789999999999999999999999999987643 3457899999999998755543
No 39
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=97.57 E-value=0.00016 Score=60.97 Aligned_cols=70 Identities=17% Similarity=0.143 Sum_probs=58.9
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee----eeEEEEeChhHHHHhhcCChHH
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI----KRETWVLTGEGKKYAAEGSPEV 73 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~----~~~~~~LTeEG~~~l~~G~PE~ 73 (349)
|..||..|...+. .+..+||+.+|++++.|.+.++.|+.+|+|..+.. -...+.||++|++++..-.+..
T Consensus 52 q~~vL~~l~~~~~-~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~~ 125 (159)
T 3s2w_A 52 QFPFLMRLYREDG-INQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEPDMKKIA 125 (159)
T ss_dssp THHHHHHHHHSCS-EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHHHHHHHH
Confidence 5678999987765 57789999999999999999999999999987653 2457899999999998765543
No 40
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=97.56 E-value=0.00021 Score=59.22 Aligned_cols=71 Identities=8% Similarity=0.087 Sum_probs=58.8
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee----eeEEEEeChhHHHHhhcCChHH
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI----KRETWVLTGEGKKYAAEGSPEV 73 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~----~~~~~~LTeEG~~~l~~G~PE~ 73 (349)
.|..||..|...+. .+..++|+.+|++...|.+.++.|+.+|+|..... ....+.||++|++++..-.+..
T Consensus 43 ~~~~iL~~l~~~~~-~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~ 117 (150)
T 2rdp_A 43 PQFVALQWLLEEGD-LTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIEEVIEKR 117 (150)
T ss_dssp HHHHHHHHHHHHCS-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHHHHHHHHH
Confidence 36788999987665 67889999999999999999999999999988643 3447899999999997766543
No 41
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=97.56 E-value=0.00016 Score=59.07 Aligned_cols=70 Identities=14% Similarity=0.124 Sum_probs=58.2
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee----eeEEEEeChhHHHHhhcCChH
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI----KRETWVLTGEGKKYAAEGSPE 72 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~----~~~~~~LTeEG~~~l~~G~PE 72 (349)
.+..||..|...+. .+..++|+.+|++...|.+.++.|+.+|+|..... ....+.||++|+++++.-.+.
T Consensus 37 ~~~~iL~~l~~~~~-~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~ 110 (142)
T 2fbi_A 37 QQWRVIRILRQQGE-MESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSMSGD 110 (142)
T ss_dssp HHHHHHHHHHHHCS-EEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHHHHHHHH
Confidence 36778999987665 57789999999999999999999999999987643 345789999999998765443
No 42
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=97.55 E-value=0.00023 Score=58.58 Aligned_cols=71 Identities=20% Similarity=0.058 Sum_probs=59.6
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee----eeEEEEeChhHHHHhhcCChHH
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI----KRETWVLTGEGKKYAAEGSPEV 73 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~----~~~~~~LTeEG~~~l~~G~PE~ 73 (349)
.+..||..|...+. .+..++|+.+|++...|.+.+..|+.+|+|..... ....+.||++|++++..-.+..
T Consensus 30 ~~~~iL~~l~~~~~-~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~ 104 (144)
T 1lj9_A 30 GQYLYLVRVCENPG-IIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPIIVREN 104 (144)
T ss_dssp THHHHHHHHHHSTT-EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcC-cCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHHHHHHHHH
Confidence 36788999987765 56789999999999999999999999999988653 3457899999999997766544
No 43
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=97.55 E-value=0.00023 Score=58.56 Aligned_cols=70 Identities=17% Similarity=0.201 Sum_probs=58.2
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEe----eeeEEEEeChhHHHHhhcCChH
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQD----IKRETWVLTGEGKKYAAEGSPE 72 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~----~~~~~~~LTeEG~~~l~~G~PE 72 (349)
.+..||..|...+. .+..++|+.+|++...|.+.+..|+.+|+|.... .....+.||++|++++..-.+.
T Consensus 34 ~~~~iL~~l~~~~~-~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~~~~ 107 (145)
T 2a61_A 34 AQFDILQKIYFEGP-KRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKVIER 107 (145)
T ss_dssp HHHHHHHHHHHHCC-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHHHHHHHH
Confidence 36778999987665 6788999999999999999999999999998864 3345789999999998765443
No 44
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=97.55 E-value=8.8e-05 Score=61.27 Aligned_cols=64 Identities=16% Similarity=0.287 Sum_probs=55.5
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHh--CCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHHHhhc
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAER--GFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAAE 68 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~--g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~l~~ 68 (349)
...+||..|...+. .+..+||..+ |++...|..-++.|+..|+|+...+. .|.||++|++++..
T Consensus 14 ~d~~IL~~L~~~g~-~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~~rg--~Y~LT~~G~~~l~~ 79 (111)
T 3b73_A 14 WDDRILEIIHEEGN-GSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPLANG--VYVITEEGEAYLNG 79 (111)
T ss_dssp HHHHHHHHHHHHSC-BCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEECSTT--CEEECHHHHHHHTT
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEecCCc--eEEECchHHHHHHH
Confidence 35789999987665 6788999999 99999999999999999999986433 89999999998853
No 45
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=97.55 E-value=0.00019 Score=59.28 Aligned_cols=70 Identities=10% Similarity=0.050 Sum_probs=58.8
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeee----eEEEEeChhHHHHhhcCChHH
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIK----RETWVLTGEGKKYAAEGSPEV 73 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~----~~~~~LTeEG~~~l~~G~PE~ 73 (349)
.+..||..|...+. +..++|+.+|++.+.|.+.+..|+.+|+|...... ...+.||++|++++....+..
T Consensus 38 ~~~~iL~~l~~~~~--~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~ 111 (144)
T 3f3x_A 38 LDFSILKATSEEPR--SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLLEANEVL 111 (144)
T ss_dssp HHHHHHHHHHHSCE--EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC--CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHHHHHHHHH
Confidence 36789999987765 67899999999999999999999999999876543 347899999999998766543
No 46
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=97.54 E-value=0.00024 Score=59.61 Aligned_cols=71 Identities=20% Similarity=0.105 Sum_probs=59.4
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee----eeEEEEeChhHHHHhhcCChHH
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI----KRETWVLTGEGKKYAAEGSPEV 73 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~----~~~~~~LTeEG~~~l~~G~PE~ 73 (349)
.|..||..|...+. .+..++|+.+|++...|.+.++.|+.+|+|..... ....+.||++|++++..-.+..
T Consensus 45 ~~~~iL~~l~~~~~-~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~ 119 (154)
T 2eth_A 45 TELYAFLYVALFGP-KKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGEILSNF 119 (154)
T ss_dssp HHHHHHHHHHHHCC-BCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHHHHHHHHH
Confidence 36789999987665 67889999999999999999999999999988653 3557899999999997765543
No 47
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=97.54 E-value=0.00032 Score=59.61 Aligned_cols=88 Identities=14% Similarity=0.099 Sum_probs=64.8
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeee----eEEEEeChhHHHHhhcCChHHHHH-H
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIK----RETWVLTGEGKKYAAEGSPEVQLF-L 77 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~----~~~~~LTeEG~~~l~~G~PE~rl~-~ 77 (349)
+..||..|...+......+||+.+|++.+.|.+.+..|+.+|||.-.... ...+.||++|+++++.-.+...-+ .
T Consensus 33 q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~~~~~~~~~~~~ 112 (151)
T 4aik_A 33 HWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIEQVDGVISSTRK 112 (151)
T ss_dssp HHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 56789999765554555789999999999999999999999999876543 347899999999997766544322 2
Q ss_pred hcCcCCCCCHHHHHh
Q 018851 78 AVPAEGSISKDELQK 92 (349)
Q Consensus 78 ~l~~~g~~~~~el~~ 92 (349)
.+- . +++-+|+..
T Consensus 113 ~~~-~-~l~~ee~~~ 125 (151)
T 4aik_A 113 EIL-G-GISSDEIAV 125 (151)
T ss_dssp HHT-T-TSCHHHHHH
T ss_pred HHH-h-CCCHHHHHH
Confidence 222 1 256555543
No 48
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=97.53 E-value=0.00024 Score=59.82 Aligned_cols=71 Identities=13% Similarity=0.120 Sum_probs=59.4
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee----eeEEEEeChhHHHHhhcCChHH
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI----KRETWVLTGEGKKYAAEGSPEV 73 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~----~~~~~~LTeEG~~~l~~G~PE~ 73 (349)
.+..||..|...+. .+..++|+.+|++...|.+.++.|+.+|+|..... ....+.||++|++++..-.+..
T Consensus 53 ~~~~iL~~l~~~~~-~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~ 127 (162)
T 3cjn_A 53 AKMRALAILSAKDG-LPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDRLWPHM 127 (162)
T ss_dssp HHHHHHHHHHHSCS-EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHHHHH
Confidence 36789999987765 57789999999999999999999999999987642 3457899999999998766544
No 49
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=97.51 E-value=0.00015 Score=60.06 Aligned_cols=70 Identities=20% Similarity=0.234 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee----eeEEEEeChhHHHHhhcCChH
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI----KRETWVLTGEGKKYAAEGSPE 72 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~----~~~~~~LTeEG~~~l~~G~PE 72 (349)
.+..||..|...+. .+..++|+.+|+++..|.+.+..|+.+|+|..+.. ....+.||++|+++++.-.+.
T Consensus 41 ~~~~iL~~l~~~~~-~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~~~~~~ 114 (148)
T 3nrv_A 41 TEWRIISVLSSASD-CSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDF 114 (148)
T ss_dssp HHHHHHHHHHHSSS-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHHHHHHH
Confidence 36789999988775 67889999999999999999999999999987643 245789999999999775553
No 50
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=97.51 E-value=0.00027 Score=58.40 Aligned_cols=71 Identities=14% Similarity=0.257 Sum_probs=58.0
Q ss_pred HHHHHHHHHhh-CCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee----eeEEEEeChhHHHHhhcCChHH
Q 018851 2 AEEAILGYLEK-NEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI----KRETWVLTGEGKKYAAEGSPEV 73 (349)
Q Consensus 2 ~e~~iL~~L~~-~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~----~~~~~~LTeEG~~~l~~G~PE~ 73 (349)
.+..||..|.. .+. .+..++|+.+|++...|.+.++.|+.+|+|..... ....+.||++|++++..-.+..
T Consensus 36 ~~~~iL~~l~~~~~~-~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~ 111 (147)
T 2hr3_A 36 SQLVVLGAIDRLGGD-VTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYGNRAKR 111 (147)
T ss_dssp HHHHHHHHHHHTTSC-BCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC-CCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHHHHHHHHH
Confidence 36778999987 665 67889999999999999999999999999987643 3346899999999987765543
No 51
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=97.51 E-value=0.00021 Score=55.52 Aligned_cols=65 Identities=12% Similarity=0.091 Sum_probs=54.0
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEe----eeeEEEEeChhHHHHhhc
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQD----IKRETWVLTGEGKKYAAE 68 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~----~~~~~~~LTeEG~~~l~~ 68 (349)
...||..|...+. .+..++|+.+|++...|.+.++.|+.+|+|.... .....|.||++|.+.+..
T Consensus 18 ~~~iL~~L~~~~~-~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~~~~ 86 (100)
T 1ub9_A 18 RLGIMIFLLPRRK-APFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKR 86 (100)
T ss_dssp HHHHHHHHHHHSE-EEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHHHHH
Confidence 4678888875554 5678999999999999999999999999998654 345689999999877654
No 52
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=97.50 E-value=0.00012 Score=57.52 Aligned_cols=69 Identities=17% Similarity=0.101 Sum_probs=50.6
Q ss_pred HHHHHHHHhhC--C-CCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee-eeEEEEeChhHHHHhhcCCh
Q 018851 3 EEAILGYLEKN--E-QISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI-KRETWVLTGEGKKYAAEGSP 71 (349)
Q Consensus 3 e~~iL~~L~~~--~-~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~-~~~~~~LTeEG~~~l~~G~P 71 (349)
+..||..|... + ...+..++|+.+|++.+.|.+.+..|+.+|||..... -...+.||++|+++++.-.+
T Consensus 14 ~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~~G~~~~~~~~~ 86 (95)
T 2qvo_A 14 ALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLTDKGQKIAQQIKS 86 (95)
T ss_dssp HHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEEChhHHHHHHHHHH
Confidence 34566555322 1 1145689999999999999999999999999943322 24579999999998865433
No 53
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=97.49 E-value=0.00014 Score=60.11 Aligned_cols=70 Identities=13% Similarity=0.144 Sum_probs=53.3
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeee----eEEEEeChhHHHHhhcCChH
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIK----RETWVLTGEGKKYAAEGSPE 72 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~----~~~~~LTeEG~~~l~~G~PE 72 (349)
.+..||..|...+. .+..+||+.+|++++.|.+.+..|+.+|+|...... ...+.||++|+++++.-.+.
T Consensus 38 ~~~~vL~~l~~~~~-~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~~~ 111 (142)
T 3ech_A 38 PDVHVLKLIDEQRG-LNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLHAELI 111 (142)
T ss_dssp HHHHHHHHHHHTTT-CCHHHHHHHHC---CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHHHHHHH
Confidence 36789999988776 678899999999999999999999999999875442 33579999999999776553
No 54
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=97.47 E-value=0.0001 Score=61.04 Aligned_cols=72 Identities=25% Similarity=0.255 Sum_probs=59.5
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee----eeEEEEeChhHHHHhhcCChHHH
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI----KRETWVLTGEGKKYAAEGSPEVQ 74 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~----~~~~~~LTeEG~~~l~~G~PE~r 74 (349)
.+..||..|...+. .+..+||+.+|++++.|.+.+..|+.+|+|..... ....+.||++|+++++.-.+...
T Consensus 32 ~q~~iL~~l~~~~~-~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~ 107 (145)
T 3g3z_A 32 NLFAVLYTLATEGS-RTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAAPLTESAQ 107 (145)
T ss_dssp HHHHHHHHHHHHCS-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHHHHHHHHHH
Confidence 36789999987776 67889999999999999999999999999987543 23479999999999876555443
No 55
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=97.47 E-value=0.00023 Score=59.08 Aligned_cols=71 Identities=13% Similarity=0.184 Sum_probs=59.2
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee----eeEEEEeChhHHHHhhcCChHH
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI----KRETWVLTGEGKKYAAEGSPEV 73 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~----~~~~~~LTeEG~~~l~~G~PE~ 73 (349)
.+..||..|...+. .+..++|+.+|++...|.+.++.|+.+|+|..... ....+.||++|++++..-.+..
T Consensus 41 ~~~~iL~~l~~~~~-~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~ 115 (152)
T 3bj6_A 41 GQRAILEGLSLTPG-ATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIITAIRADE 115 (152)
T ss_dssp HHHHHHHHHHHSTT-EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHHHHHHHHH
Confidence 36788999987765 57789999999999999999999999999988643 3447899999999988765543
No 56
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=97.47 E-value=0.0002 Score=60.25 Aligned_cols=72 Identities=17% Similarity=0.223 Sum_probs=57.3
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee----eeEEEEeChhHHHHhhcCChHHH
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI----KRETWVLTGEGKKYAAEGSPEVQ 74 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~----~~~~~~LTeEG~~~l~~G~PE~r 74 (349)
.|..||..|...+. .+..++|+.+|++...|.+.+..|+.+|||..... ....+.||++|++++..-.+...
T Consensus 50 ~~~~iL~~l~~~~~-~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~ 125 (162)
T 2fa5_A 50 PEWRVITILALYPG-SSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYETVAPLVN 125 (162)
T ss_dssp HHHHHHHHHHHSTT-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHHHHHHHHH
Confidence 36778999987665 67889999999999999999999999999987542 23468999999999987666543
No 57
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=97.46 E-value=0.00013 Score=60.80 Aligned_cols=70 Identities=7% Similarity=0.099 Sum_probs=58.2
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEE--Ee----eeeEEEEeChhHHHHhhcCChH
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDA--QD----IKRETWVLTGEGKKYAAEGSPE 72 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~--~~----~~~~~~~LTeEG~~~l~~G~PE 72 (349)
.+..||..|...+. .+..++|+.+|++.+.|.+.+..|+.+|+|.. .. .....+.||++|+++++.-.+.
T Consensus 42 ~~~~iL~~l~~~~~-~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~~~~~~ 117 (154)
T 2qww_A 42 QQLAMINVIYSTPG-ISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSKRSTAN 117 (154)
T ss_dssp HHHHHHHHHHHSTT-EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHHHHHhh
Confidence 36789999987765 57789999999999999999999999999987 33 2334789999999998776555
No 58
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=97.46 E-value=0.00014 Score=60.69 Aligned_cols=86 Identities=17% Similarity=0.298 Sum_probs=62.3
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEe------eeeEEEEeChhHHHHhhcCChHHHH
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQD------IKRETWVLTGEGKKYAAEGSPEVQL 75 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~------~~~~~~~LTeEG~~~l~~G~PE~rl 75 (349)
.|..||..| ..+. .+..++|+.+|++.+.|.+.+..|+.+|+|..+. .....+.||++|++++..-.+...-
T Consensus 39 ~q~~iL~~l-~~~~-~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~~~~~~~~~~ 116 (151)
T 3kp7_A 39 EQSHVLNML-SIEA-LTVGQITEKQGVNKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIKERKAIMSH 116 (151)
T ss_dssp HHHHHHHHH-HHSC-BCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HcCC-cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHHHHHHHHHHH
Confidence 367789999 6655 6788999999999999999999999999999643 3344689999999999876664433
Q ss_pred H-HhcCcCCCCCHHHHH
Q 018851 76 F-LAVPAEGSISKDELQ 91 (349)
Q Consensus 76 ~-~~l~~~g~~~~~el~ 91 (349)
+ ..+- . .++-+|+.
T Consensus 117 ~~~~~~-~-~l~~~e~~ 131 (151)
T 3kp7_A 117 IASDMT-S-DFDSKEIE 131 (151)
T ss_dssp HHHHTT-T-TSCHHHHH
T ss_pred HHHHHH-h-cCCHHHHH
Confidence 3 3332 1 25555544
No 59
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=97.45 E-value=0.00028 Score=58.35 Aligned_cols=72 Identities=10% Similarity=0.082 Sum_probs=55.6
Q ss_pred HHHHHHHHhh---CCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHHHhhcCChHHHHHH
Q 018851 3 EEAILGYLEK---NEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAAEGSPEVQLFL 77 (349)
Q Consensus 3 e~~iL~~L~~---~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~l~~G~PE~rl~~ 77 (349)
+..+|..|.. .+...+..++|+.+|++...|.+.++.|+.+|+|.... ..+.||+.|++++..-.+..+++.
T Consensus 15 ~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~~---~~~~Lt~~g~~~~~~~~~~~~~~~ 89 (139)
T 2x4h_A 15 EFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKKE---DGVWITNNGTRSINYLIKAHRVIE 89 (139)
T ss_dssp HHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET---TEEEECHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEecC---CeEEEChhHHHHHHHHHHHHHHHH
Confidence 3455555532 23336788999999999999999999999999998766 579999999998876665544443
No 60
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=97.45 E-value=0.00025 Score=55.50 Aligned_cols=70 Identities=14% Similarity=0.141 Sum_probs=54.4
Q ss_pred HHHHHHhhCCCCCChHHHHHHhCCCHHH-HHHHHHHhccCCcEEEEee--eeEEEEeChhHHHHhhcCChHHH
Q 018851 5 AILGYLEKNEQISDSGNFAAERGFDHND-VVNVIKSLHGFRYIDAQDI--KRETWVLTGEGKKYAAEGSPEVQ 74 (349)
Q Consensus 5 ~iL~~L~~~~~~~~~~~la~~~g~~~~~-v~~~~~~L~~kgli~~~~~--~~~~~~LTeEG~~~l~~G~PE~r 74 (349)
.+|..|...+...+..++|+.+|++... |.+.++.|+.+|+|..... ....+.||++|+++++.=.+..+
T Consensus 19 ~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~~~~~~~~~~ 91 (95)
T 2pg4_A 19 PTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRLAECLEKCRD 91 (95)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHHHHHHHHHHH
Confidence 4666676666226788999999999999 9999999999999983322 34578999999998876444443
No 61
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=97.45 E-value=0.00022 Score=58.14 Aligned_cols=71 Identities=11% Similarity=0.180 Sum_probs=59.2
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee----eeEEEEeChhHHHHhhcCChHH
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI----KRETWVLTGEGKKYAAEGSPEV 73 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~----~~~~~~LTeEG~~~l~~G~PE~ 73 (349)
.+..||..|...+. .+..++|+.+|++...|.+.++.|+.+|+|..... ....+.||++|++++..-.+..
T Consensus 34 ~~~~iL~~l~~~~~-~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~~~~~~~~ 108 (139)
T 3bja_A 34 VQFGVIQVLAKSGK-VSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKKQVDVQY 108 (139)
T ss_dssp HHHHHHHHHHHSCS-EEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-cCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHHHHHHHHH
Confidence 36789999987765 57789999999999999999999999999987643 3457899999999998765543
No 62
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=97.44 E-value=0.00017 Score=61.06 Aligned_cols=72 Identities=22% Similarity=0.216 Sum_probs=59.2
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee----eeEEEEeChhHHHHhhcCChHHH
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI----KRETWVLTGEGKKYAAEGSPEVQ 74 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~----~~~~~~LTeEG~~~l~~G~PE~r 74 (349)
.|..||..|...+. .+..+||+.+|++...|.+.+..|+.+|||..+.. -...+.||++|+++++.-.+...
T Consensus 54 ~q~~vL~~l~~~~~-~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~~~~~ 129 (161)
T 3e6m_A 54 PKLRLLSSLSAYGE-LTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEISPLIN 129 (161)
T ss_dssp HHHHHHHHHHHHSE-EEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHHHHHHHHH
Confidence 36678999987665 56789999999999999999999999999987653 23578999999999987666433
No 63
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=97.44 E-value=0.00028 Score=60.54 Aligned_cols=71 Identities=15% Similarity=0.125 Sum_probs=56.5
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee----eeEEEEeChhHHHHhhcCChH
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI----KRETWVLTGEGKKYAAEGSPE 72 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~----~~~~~~LTeEG~~~l~~G~PE 72 (349)
.|..||..|...+...+..+||+.++++...|.+.+..|+.+|||..+.. -...+.||++|++++..-.+.
T Consensus 54 ~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~ 128 (166)
T 3deu_A 54 THWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEMEEV 128 (166)
T ss_dssp HHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHHHHHHH
Confidence 36789999987333367789999999999999999999999999987643 335789999999999776554
No 64
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=97.42 E-value=0.00024 Score=58.61 Aligned_cols=67 Identities=21% Similarity=0.220 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEe----eeeEEEEeChhHHHHhhcCC
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQD----IKRETWVLTGEGKKYAAEGS 70 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~----~~~~~~~LTeEG~~~l~~G~ 70 (349)
.+..||..|...+ .+..++|+.+|++.+.|.+.+..|+.+|+|.... .....+.||++|++++....
T Consensus 39 ~~~~iL~~l~~~~--~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~~~~~ 109 (146)
T 3tgn_A 39 TQEHILMLLSEES--LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIAEEHH 109 (146)
T ss_dssp HHHHHHHHHTTCC--CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHHHHHH
T ss_pred HHHHHHHHHHhCC--CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHHHHHH
Confidence 4678999998766 6788999999999999999999999999998754 33457899999999998765
No 65
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=97.42 E-value=0.00036 Score=55.70 Aligned_cols=61 Identities=18% Similarity=0.170 Sum_probs=51.7
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHHHhhc
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAAE 68 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~l~~ 68 (349)
+-+.||..+.. + ...-++|..+|+++..+...+..|+.+|||..... .|.||++|+++++.
T Consensus 9 Ii~~IL~~i~~-~--~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~~~---~~~LT~kG~~~l~~ 69 (95)
T 1r7j_A 9 IIQAILEACKS-G--SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQEGK---QYMLTKKGEELLED 69 (95)
T ss_dssp HHHHHHHHHTT-C--BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT---EEEECHHHHHHHHH
T ss_pred HHHHHHHHHHc-C--CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEECC---eeEEChhHHHHHHH
Confidence 34678998873 3 46779999999999999999999999999998743 49999999998743
No 66
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=97.37 E-value=0.00064 Score=56.14 Aligned_cols=66 Identities=12% Similarity=0.167 Sum_probs=54.4
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHh------CCCHHHHHHHHHHhccCCcEEEEee------eeEEEEeChhHHHHhhcC
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAER------GFDHNDVVNVIKSLHGFRYIDAQDI------KRETWVLTGEGKKYAAEG 69 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~------g~~~~~v~~~~~~L~~kgli~~~~~------~~~~~~LTeEG~~~l~~G 69 (349)
++..||..|...+ ..-.++++.+ ++++..|..+++.|+.+|+|+.... ....|.||+.|++++..=
T Consensus 12 l~~~IL~lL~~~p--~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~ 89 (117)
T 4esf_A 12 LEGCVLEIISRRE--TYGYEITRHLNDLGFTEVVEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEAGRQELELF 89 (117)
T ss_dssp HHHHHHHHHHHSC--BCHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC--CCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHHHHHHHHHH
Confidence 4677899998643 4667888876 7999999999999999999988642 466899999999998663
No 67
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=97.37 E-value=0.00019 Score=59.94 Aligned_cols=71 Identities=10% Similarity=0.147 Sum_probs=56.5
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee----eeEEEEeChhHHHHhhcCChHH
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI----KRETWVLTGEGKKYAAEGSPEV 73 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~----~~~~~~LTeEG~~~l~~G~PE~ 73 (349)
.|..||..|...+. .+..+||+.+|++++.|.+.+..|+.+|||..... -...+.||++|+++++.-.+..
T Consensus 42 ~q~~iL~~l~~~~~-~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~ 116 (149)
T 4hbl_A 42 SQYLVMLTLWEENP-QTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQEAVFEAI 116 (149)
T ss_dssp HHHHHHHHHHHSSS-EEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHHHHHHHH
Confidence 36789999987766 57789999999999999999999999999987543 3447899999999987654433
No 68
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=97.35 E-value=0.00036 Score=58.09 Aligned_cols=70 Identities=17% Similarity=0.070 Sum_probs=58.3
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeee----eEEEEeChhHHHHhhcCChHH
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIK----RETWVLTGEGKKYAAEGSPEV 73 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~----~~~~~LTeEG~~~l~~G~PE~ 73 (349)
+..||..|...+. .+..++|+.+|++...|.+.+..|+.+|+|...... ...+.||++|++++..-.+..
T Consensus 39 ~~~iL~~l~~~~~-~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~ 112 (155)
T 1s3j_A 39 QLFVLASLKKHGS-LKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEEVLAGR 112 (155)
T ss_dssp HHHHHHHHHHHSE-EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHHHHHHHHH
Confidence 6778999987664 567899999999999999999999999999876532 447899999999998765543
No 69
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=97.35 E-value=0.00076 Score=55.66 Aligned_cols=69 Identities=16% Similarity=0.172 Sum_probs=55.5
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHh------CCCHHHHHHHHHHhccCCcEEEEee------eeEEEEeChhHHHHhhcC
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAER------GFDHNDVVNVIKSLHGFRYIDAQDI------KRETWVLTGEGKKYAAEG 69 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~------g~~~~~v~~~~~~L~~kgli~~~~~------~~~~~~LTeEG~~~l~~G 69 (349)
++..||..|...+ ..-.++++.+ ++++..|..+++.|+.+|+|+.... ....|.||+.|++++.+=
T Consensus 14 l~~~IL~lL~~~p--~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~~G~~~l~~~ 91 (116)
T 3hhh_A 14 LEGLVLAIIQRKE--TYGYEITKILNDQGFTEIVEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTSSGEAELADF 91 (116)
T ss_dssp HHHHHHHHHHHSC--BCHHHHHHHHHTTSCSSCCHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC--CCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHHHH
Confidence 4677899998544 4567888876 6899999999999999999988642 456899999999999764
Q ss_pred ChH
Q 018851 70 SPE 72 (349)
Q Consensus 70 ~PE 72 (349)
..+
T Consensus 92 ~~~ 94 (116)
T 3hhh_A 92 WQR 94 (116)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 70
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=97.35 E-value=0.00056 Score=59.95 Aligned_cols=88 Identities=19% Similarity=0.196 Sum_probs=67.0
Q ss_pred HHHHHHHHHhh--CCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeee----eEEEEeChhHHHHhhcCChHHH-
Q 018851 2 AEEAILGYLEK--NEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIK----RETWVLTGEGKKYAAEGSPEVQ- 74 (349)
Q Consensus 2 ~e~~iL~~L~~--~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~----~~~~~LTeEG~~~l~~G~PE~r- 74 (349)
.+..||..|.. .+. .+..+||+.+|++.+.|.+.+..|+.+|||...... ...+.||++|++++..-.+...
T Consensus 42 ~q~~vL~~L~~~~~~~-~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~~~~ 120 (189)
T 3nqo_A 42 RQYMTILSILHLPEEE-TTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVTCSRTGIN 120 (189)
T ss_dssp HHHHHHHHHHHSCGGG-CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCC-cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHHHHHHHH
Confidence 36788999986 333 678899999999999999999999999999886543 3688999999999987766543
Q ss_pred HHHhcCcCCCCCHHHHHh
Q 018851 75 LFLAVPAEGSISKDELQK 92 (349)
Q Consensus 75 l~~~l~~~g~~~~~el~~ 92 (349)
++..+- ..++-+++..
T Consensus 121 ~~~~~~--~~l~~ee~~~ 136 (189)
T 3nqo_A 121 FMADVF--HEFTKDELET 136 (189)
T ss_dssp HHHHHT--TTCCHHHHHH
T ss_pred HHHHHH--HhCCHHHHHH
Confidence 233332 2366666654
No 71
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=97.34 E-value=0.00029 Score=58.96 Aligned_cols=70 Identities=14% Similarity=0.157 Sum_probs=57.2
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee----eeEEEEeChhHHHHhhcCChH
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI----KRETWVLTGEGKKYAAEGSPE 72 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~----~~~~~~LTeEG~~~l~~G~PE 72 (349)
.+..||..|...+. .+..++|+.+|++...|.+.+..|+.+|+|..... ....+.||++|+++++.-.+.
T Consensus 44 ~~~~iL~~l~~~~~-~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~ 117 (155)
T 3cdh_A 44 PEWRVLACLVDNDA-MMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAESLVAS 117 (155)
T ss_dssp HHHHHHHHHSSCSC-BCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHHHHHHHH
Confidence 36778999987665 67889999999999999999999999999986543 234689999999998775554
No 72
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=97.32 E-value=0.0008 Score=55.29 Aligned_cols=71 Identities=13% Similarity=0.098 Sum_probs=56.0
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHh--------CCCHHHHHHHHHHhccCCcEEEEe------eeeEEEEeChhHHHHhh
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAER--------GFDHNDVVNVIKSLHGFRYIDAQD------IKRETWVLTGEGKKYAA 67 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~--------g~~~~~v~~~~~~L~~kgli~~~~------~~~~~~~LTeEG~~~l~ 67 (349)
++..||..|...+ ..-.++.+.+ ++++..|...++.|+.+|+|+... .....|.||+.|++.+.
T Consensus 13 l~~~IL~~L~~~~--~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~ 90 (116)
T 3f8b_A 13 TNVILLNVLKQGD--NYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEIGHENMR 90 (116)
T ss_dssp HHHHHHHHHHHCC--BCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHhCC--CCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEECHHHHHHHH
Confidence 4677899997643 3566777655 799999999999999999998864 24568999999999997
Q ss_pred cCChHHH
Q 018851 68 EGSPEVQ 74 (349)
Q Consensus 68 ~G~PE~r 74 (349)
+-.++..
T Consensus 91 ~~~~~~~ 97 (116)
T 3f8b_A 91 LAFESWS 97 (116)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7655544
No 73
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=97.30 E-value=0.00031 Score=57.94 Aligned_cols=73 Identities=12% Similarity=0.075 Sum_probs=60.7
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee----eeEEEEeChhHHHHhhcCChHHHHH
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI----KRETWVLTGEGKKYAAEGSPEVQLF 76 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~----~~~~~~LTeEG~~~l~~G~PE~rl~ 76 (349)
+..||..|...+. .+..++|+.+|++...|.+.+..|+.+|+|..... ....+.||++|++++..-.+...-+
T Consensus 42 ~~~iL~~l~~~~~-~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~~~~~~~~~~ 118 (147)
T 1z91_A 42 QYLALLLLWEHET-LTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEKAVDIPGTI 118 (147)
T ss_dssp HHHHHHHHHHHSE-EEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGGTTTHHHHH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHHHHHHHHHH
Confidence 6778988887664 56789999999999999999999999999987543 3447899999999999888765444
No 74
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=97.29 E-value=0.00013 Score=60.77 Aligned_cols=88 Identities=15% Similarity=0.221 Sum_probs=57.2
Q ss_pred HHHHHHHHHhhC--CCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee----eeEEEEeChhHHHHhhcCChHHHH
Q 018851 2 AEEAILGYLEKN--EQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI----KRETWVLTGEGKKYAAEGSPEVQL 75 (349)
Q Consensus 2 ~e~~iL~~L~~~--~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~----~~~~~~LTeEG~~~l~~G~PE~rl 75 (349)
.|..||..|... +. .+..+||+.+|++++.|.+.+..|+.+|||..... -...+.||++|+++++.-.+...-
T Consensus 42 ~q~~vL~~l~~~~~~~-~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~~~~~~ 120 (148)
T 3jw4_A 42 QQGRMIGYIYENQESG-IIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEFNNIFLE 120 (148)
T ss_dssp HHHHHHHHHHHHTTTC-CCHHHHHHC------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCC-CCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHHHHHHHHHHH
Confidence 367889999875 44 67889999999999999999999999999976532 334678999999999876554333
Q ss_pred H-HhcCcCCCCCHHHHHh
Q 018851 76 F-LAVPAEGSISKDELQK 92 (349)
Q Consensus 76 ~-~~l~~~g~~~~~el~~ 92 (349)
+ ..+- . .++-+|+..
T Consensus 121 ~~~~~~-~-~l~~~e~~~ 136 (148)
T 3jw4_A 121 VEESIT-K-GLTKDEQKQ 136 (148)
T ss_dssp HHHHTT-T-TCCHHHHHH
T ss_pred HHHHHH-h-cCCHHHHHH
Confidence 2 2222 1 255555443
No 75
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=97.29 E-value=0.00057 Score=54.94 Aligned_cols=61 Identities=11% Similarity=0.164 Sum_probs=51.2
Q ss_pred HHHHHHHhhCCCCCChHHHHHHh-CCCHHHHHHHHHHhccCCcEEEEee----eeEEEEeChhHHHHh
Q 018851 4 EAILGYLEKNEQISDSGNFAAER-GFDHNDVVNVIKSLHGFRYIDAQDI----KRETWVLTGEGKKYA 66 (349)
Q Consensus 4 ~~iL~~L~~~~~~~~~~~la~~~-g~~~~~v~~~~~~L~~kgli~~~~~----~~~~~~LTeEG~~~l 66 (349)
..||..|. .+. .+..+|++.+ |++...+.+.++.|+++|+|+-... ....|.||+.|++++
T Consensus 17 ~~IL~~L~-~~~-~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l~ 82 (107)
T 2hzt_A 17 XVILXHLT-HGK-KRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLE 82 (107)
T ss_dssp HHHHHHHT-TCC-BCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGH
T ss_pred HHHHHHHH-hCC-CCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHHH
Confidence 45888886 444 5788999999 9999999999999999999987654 346899999998865
No 76
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=97.29 E-value=0.00043 Score=59.17 Aligned_cols=70 Identities=16% Similarity=0.145 Sum_probs=58.2
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee----eeEEEEeChhHHHHhhcCChH
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI----KRETWVLTGEGKKYAAEGSPE 72 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~----~~~~~~LTeEG~~~l~~G~PE 72 (349)
.+..||..|...+. .+..+||+.+|++.+.|.+.+..|+.+|||..... ....+.||++|+++++.-.+.
T Consensus 46 ~~~~iL~~L~~~~~-~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~~~~ 119 (168)
T 2nyx_A 46 PQFRTLVILSNHGP-INLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQVTEH 119 (168)
T ss_dssp HHHHHHHHHHHHCS-EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHHHHH
Confidence 36788999987665 57789999999999999999999999999987543 345789999999998775554
No 77
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=97.27 E-value=0.00094 Score=54.02 Aligned_cols=71 Identities=20% Similarity=0.253 Sum_probs=55.0
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHH----hCCCHHHHHHHHHHhccCCcEEEEee-----eeEEEEeChhHHHHhhcCChH
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAE----RGFDHNDVVNVIKSLHGFRYIDAQDI-----KRETWVLTGEGKKYAAEGSPE 72 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~----~g~~~~~v~~~~~~L~~kgli~~~~~-----~~~~~~LTeEG~~~l~~G~PE 72 (349)
++..||..|...+ ..-.++++. +++++..|...++.|+.+|+|+.... ....|.||+.|++.+..=.++
T Consensus 10 l~~~IL~~L~~~~--~~gyel~~~l~~~~~i~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l~~~~~~ 87 (108)
T 3l7w_A 10 IEYLILAIVSKHD--SYGYDISQTIKLIASIKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHLVYLTKE 87 (108)
T ss_dssp HHHHHHHHHHHSC--EEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC--CcHHHHHHHHHHHhCCCcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHHHHHHHH
Confidence 5678999998643 344566655 58999999999999999999988653 356799999999998765554
Q ss_pred HH
Q 018851 73 VQ 74 (349)
Q Consensus 73 ~r 74 (349)
.+
T Consensus 88 ~~ 89 (108)
T 3l7w_A 88 WS 89 (108)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 78
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=97.25 E-value=0.00097 Score=53.98 Aligned_cols=63 Identities=13% Similarity=0.229 Sum_probs=52.6
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHh-CCCHHHHHHHHHHhccCCcEEEEee----eeEEEEeChhHHHHhh
Q 018851 3 EEAILGYLEKNEQISDSGNFAAER-GFDHNDVVNVIKSLHGFRYIDAQDI----KRETWVLTGEGKKYAA 67 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~-g~~~~~v~~~~~~L~~kgli~~~~~----~~~~~~LTeEG~~~l~ 67 (349)
...||..|.. +. .+..+||+.+ |++...|.+.++.|+.+|+|.-... ....|.||++|++.+.
T Consensus 24 ~~~IL~~L~~-~~-~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~~~ 91 (112)
T 1z7u_A 24 KLSLMDELFQ-GT-KRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALYD 91 (112)
T ss_dssp HHHHHHHHHH-SC-BCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHh-CC-CCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHHHHH
Confidence 3568888875 44 5788999999 9999999999999999999987654 3458999999998663
No 79
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=97.23 E-value=0.00083 Score=54.58 Aligned_cols=61 Identities=18% Similarity=0.213 Sum_probs=51.4
Q ss_pred HHHHHHHhhCCCCCC--hHHHHHHh-CCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHHHh
Q 018851 4 EAILGYLEKNEQISD--SGNFAAER-GFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYA 66 (349)
Q Consensus 4 ~~iL~~L~~~~~~~~--~~~la~~~-g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~l 66 (349)
..||..|. .+. .. ..+|++.+ |++...+.+.++.|+..|+|+-.......|.||+.|++.+
T Consensus 30 l~IL~~L~-~g~-~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~r~~~y~LT~~G~~l~ 93 (111)
T 3df8_A 30 MLIISVLG-NGS-TRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSGQITTYALTEKGMNVR 93 (111)
T ss_dssp HHHHHHHT-SSS-SCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEESSSEEEEECHHHHHHH
T ss_pred HHHHHHHh-cCC-CCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeecCcEEEEECccHHHHH
Confidence 45788887 443 45 78999999 9999999999999999999987655567999999999865
No 80
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=97.22 E-value=0.00047 Score=58.74 Aligned_cols=70 Identities=14% Similarity=0.033 Sum_probs=54.4
Q ss_pred HHHHHHHHHhhCC-CCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee----eeEEEEeChhHHHHhhcCCh
Q 018851 2 AEEAILGYLEKNE-QISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI----KRETWVLTGEGKKYAAEGSP 71 (349)
Q Consensus 2 ~e~~iL~~L~~~~-~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~----~~~~~~LTeEG~~~l~~G~P 71 (349)
.|..||..|...+ ...+..+||+.+|++.+.|.+.+..|+.+|||.-+.. -...+.||++|+++++.-.+
T Consensus 47 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~ 121 (168)
T 3u2r_A 47 QQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLLKDLEE 121 (168)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHHHHHHH
Confidence 3678899998742 3367889999999999999999999999999987653 34478999999999876544
No 81
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=97.22 E-value=0.00029 Score=70.63 Aligned_cols=49 Identities=12% Similarity=0.158 Sum_probs=41.2
Q ss_pred CCCChHHHHHHHHHHHHhhCCceecCCCCceeeeehhhhccCCCCCCCCCCCCCeeeecC
Q 018851 213 GHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEE 272 (349)
Q Consensus 213 g~~HPl~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDaLf~PqdHPARd~~DTFyl~~ 272 (349)
...|+-.++++.||++|.++||.|+.| |.++++ ..|+|+++.+|.|.+.
T Consensus 132 ~~~~~rs~i~~~ir~ff~~~gF~eV~T-P~l~~~----------~~e~~~~~f~~~~~~~ 180 (429)
T 1wyd_A 132 AVIKIQSLALKAFRETLYKEGFIEIFT-PKIIAS----------ATEGGAQLFPVIYFGK 180 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCC-CSEESS----------CSSTTCCCCEEEETTE
T ss_pred HHHHHHHHHHHHHHHHHhhCCCEEEEC-CEEEee----------CCCCCceeEEEecCCc
Confidence 345677789999999999999999985 888876 6899999999987653
No 82
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=97.20 E-value=0.00075 Score=56.87 Aligned_cols=87 Identities=9% Similarity=0.016 Sum_probs=62.2
Q ss_pred HHHHHHHHhhC-CCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeee----eEEEEeChhHHHHhhcCChHHHHHH
Q 018851 3 EEAILGYLEKN-EQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIK----RETWVLTGEGKKYAAEGSPEVQLFL 77 (349)
Q Consensus 3 e~~iL~~L~~~-~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~----~~~~~LTeEG~~~l~~G~PE~rl~~ 77 (349)
+..||..|... +...+..+||+.++++++.+.+.+..|+.+|||.-.... ...+.||++|+++++.-.+...-+.
T Consensus 37 q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~~~~~~ 116 (147)
T 4b8x_A 37 RYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVVEAATRDLMAMD 116 (147)
T ss_dssp HHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHHHHHHHHHHHHH
Confidence 56788877532 222466799999999999999999999999999876653 3478999999999877555443332
Q ss_pred hcCcCCCCCHHHHH
Q 018851 78 AVPAEGSISKDELQ 91 (349)
Q Consensus 78 ~l~~~g~~~~~el~ 91 (349)
..- . .++-+|+.
T Consensus 117 ~~l-~-~l~~ee~~ 128 (147)
T 4b8x_A 117 FGL-G-AYDAEECG 128 (147)
T ss_dssp GGT-T-TSCHHHHH
T ss_pred HHH-h-CCCHHHHH
Confidence 222 1 25555544
No 83
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=97.20 E-value=0.0011 Score=51.65 Aligned_cols=67 Identities=13% Similarity=0.027 Sum_probs=55.8
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee---eeEEEEeChhHHHHhhcC
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI---KRETWVLTGEGKKYAAEG 69 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~---~~~~~~LTeEG~~~l~~G 69 (349)
.+..||..|...+. .+..++|+.+|++...|.+.++.|+.+|+|..... ....+.+|+.|++++..-
T Consensus 21 ~~~~il~~l~~~~~-~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~~~~r~~~~~~t~~g~~~~~~~ 90 (109)
T 1sfx_A 21 SDVRIYSLLLERGG-MRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAEKPEKVLKEF 90 (109)
T ss_dssp HHHHHHHHHHHHCC-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEEECCHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEeecCCceEEEEecCcHHHHHHHH
Confidence 36778999976665 67889999999999999999999999999987654 245778999999987653
No 84
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=97.18 E-value=0.00093 Score=54.96 Aligned_cols=70 Identities=14% Similarity=0.136 Sum_probs=55.9
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHh------CCCHHHHHHHHHHhccCCcEEEEee------eeEEEEeChhHHHHhhcC
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAER------GFDHNDVVNVIKSLHGFRYIDAQDI------KRETWVLTGEGKKYAAEG 69 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~------g~~~~~v~~~~~~L~~kgli~~~~~------~~~~~~LTeEG~~~l~~G 69 (349)
++..||..|...+ ..-.++++.+ ++++..|..+++.|+.+|+|+.... ....|.||+.|++++..-
T Consensus 10 l~~~IL~~L~~~~--~~Gyei~~~l~~~~~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~ 87 (115)
T 4esb_A 10 LEGCILYIISQEE--VYGYELSTKLNKHGFTFVSEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLEQLEEF 87 (115)
T ss_dssp HHHHHHHHHHHSC--EEHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC--CCHHHHHHHHHHcCCCCCCcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHHHHHHH
Confidence 5678999998543 3567888776 4899999999999999999988642 466899999999999775
Q ss_pred ChHH
Q 018851 70 SPEV 73 (349)
Q Consensus 70 ~PE~ 73 (349)
..+.
T Consensus 88 ~~~~ 91 (115)
T 4esb_A 88 KQSW 91 (115)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 85
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=97.15 E-value=0.0002 Score=58.90 Aligned_cols=69 Identities=17% Similarity=0.237 Sum_probs=56.0
Q ss_pred HHHHHHHHHhhC--CCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee----eeEEEEeChhHHHHhhcCCh
Q 018851 2 AEEAILGYLEKN--EQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI----KRETWVLTGEGKKYAAEGSP 71 (349)
Q Consensus 2 ~e~~iL~~L~~~--~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~----~~~~~~LTeEG~~~l~~G~P 71 (349)
.|..||..|... +. .+..+||+.+|++...|.+.++.|+.+|||..+.. -...+.||++|+++++.-.+
T Consensus 38 ~q~~vL~~l~~~~~~~-~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~~~~~ 112 (127)
T 2frh_A 38 EEFAVLTYISENKEKE-YYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLLS 112 (127)
T ss_dssp HHHHHHHHHHHTCCSE-EEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCC-cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHHH
Confidence 367789999876 44 56789999999999999999999999999987432 34478999999998865433
No 86
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=97.11 E-value=0.0015 Score=55.95 Aligned_cols=69 Identities=20% Similarity=0.239 Sum_probs=54.1
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHh--------CCCHHHHHHHHHHhccCCcEEEEee------eeEEEEeChhHHHHhh
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAER--------GFDHNDVVNVIKSLHGFRYIDAQDI------KRETWVLTGEGKKYAA 67 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~--------g~~~~~v~~~~~~L~~kgli~~~~~------~~~~~~LTeEG~~~l~ 67 (349)
++..||.+|...+ ..-.+|++.+ ++++..|...++.|+.+|+|+.... ....|.||+.|++.+.
T Consensus 42 ~~~~IL~~L~~~~--~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~ 119 (145)
T 1xma_A 42 VDTIILSLLIEGD--SYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYYK 119 (145)
T ss_dssp HHHHHHHHHHHCC--EEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHhCC--CCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECHHHHHHHH
Confidence 5678999997533 3456777665 6999999999999999999987643 3568999999999987
Q ss_pred cCChH
Q 018851 68 EGSPE 72 (349)
Q Consensus 68 ~G~PE 72 (349)
.-..+
T Consensus 120 ~~~~~ 124 (145)
T 1xma_A 120 QKCEE 124 (145)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 64333
No 87
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=97.10 E-value=0.00099 Score=53.42 Aligned_cols=61 Identities=20% Similarity=0.231 Sum_probs=49.9
Q ss_pred HHHHHHHhhCCCCCChHHHHHHh-CCCHHHHHHHHHHhccCCcEEEEee----eeEEEEeChhHHHHh
Q 018851 4 EAILGYLEKNEQISDSGNFAAER-GFDHNDVVNVIKSLHGFRYIDAQDI----KRETWVLTGEGKKYA 66 (349)
Q Consensus 4 ~~iL~~L~~~~~~~~~~~la~~~-g~~~~~v~~~~~~L~~kgli~~~~~----~~~~~~LTeEG~~~l 66 (349)
..||..|. .+. ....+|++.+ |++...+.+.++.|+.+|+|.-... ....|.||+.|++.+
T Consensus 28 ~~IL~~L~-~~~-~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 28 LLIIFQIN-RRI-IRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVL 93 (107)
T ss_dssp HHHHHHHT-TSC-EEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTH
T ss_pred HHHHHHHH-hCC-cCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECccHHHHH
Confidence 35788886 444 5678999999 5999999999999999999987654 246899999998755
No 88
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=97.07 E-value=0.0013 Score=50.80 Aligned_cols=65 Identities=15% Similarity=0.198 Sum_probs=53.5
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee-eeEEEEeChhHHHHhhc
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI-KRETWVLTGEGKKYAAE 68 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~-~~~~~~LTeEG~~~l~~ 68 (349)
...||..|...+. .+..++|+.+|++...|.+.++.|+..|+|..... ....|.||++|...+.+
T Consensus 26 ~~~il~~l~~~~~-~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~~~~l~~ 91 (99)
T 3cuo_A 26 RLLILCMLSGSPG-TSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQRILYSIKNEAVNAIIA 91 (99)
T ss_dssp HHHHHHHHTTCCS-EEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCHHHHHHHH
T ss_pred HHHHHHHHHhCCC-cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHHH
Confidence 5678888876544 57789999999999999999999999999987654 45589999999765533
No 89
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=97.06 E-value=0.00058 Score=57.23 Aligned_cols=71 Identities=13% Similarity=0.076 Sum_probs=56.2
Q ss_pred HHHHHHHHHh-hCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee----eeEEEEeChhHHHHhhcCChHH
Q 018851 2 AEEAILGYLE-KNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI----KRETWVLTGEGKKYAAEGSPEV 73 (349)
Q Consensus 2 ~e~~iL~~L~-~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~----~~~~~~LTeEG~~~l~~G~PE~ 73 (349)
.+..||..|. ..+. .+..+||+.+|++...|.+.++.|+.+|||..... ....+.||++|++++..-.+..
T Consensus 48 ~~~~iL~~L~~~~~~-~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~ 123 (160)
T 3boq_A 48 AKFDAMAQLARNPDG-LSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFKQASEAH 123 (160)
T ss_dssp HHHHHHHHHHHCTTC-EEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC-CCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHHHHHHHHH
Confidence 3678999994 4444 67789999999999999999999999999987543 2346899999999998765543
No 90
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=97.05 E-value=0.00086 Score=55.37 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhC------CCHHHHHHHHHHhccCCcEEEEee------eeEEEEeChhHHHHhhcC
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERG------FDHNDVVNVIKSLHGFRYIDAQDI------KRETWVLTGEGKKYAAEG 69 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g------~~~~~v~~~~~~L~~kgli~~~~~------~~~~~~LTeEG~~~l~~G 69 (349)
++..||..|...+ ..-.++++.+. +++..|...++.|+..|+|+.... ....|.||++|++++.+-
T Consensus 15 l~~~IL~lL~~~p--~~gyel~~~l~~~~~~~i~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT~~G~~~l~~~ 92 (117)
T 3elk_A 15 ITLYILKELVKRP--MHGYELQKSMFETTGQALPQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHITDAGKKFLCDH 92 (117)
T ss_dssp HHHHHHHHHHHSC--EEHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECHHHHHHHHHT
T ss_pred HHHHHHHHHHcCC--CCHHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHHHH
Confidence 4567899997543 35577777654 889999999999999999998753 466899999999999765
Q ss_pred ChH
Q 018851 70 SPE 72 (349)
Q Consensus 70 ~PE 72 (349)
..+
T Consensus 93 ~~~ 95 (117)
T 3elk_A 93 SQA 95 (117)
T ss_dssp STT
T ss_pred HHH
Confidence 444
No 91
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=97.04 E-value=0.0011 Score=64.41 Aligned_cols=97 Identities=15% Similarity=0.177 Sum_probs=65.6
Q ss_pred CCCCCChHHHHHHHHHHHHhhCCceecCCCCceeeeehhhhc-cCCCCCCCCCCCCCeeeecCCCCCCCCCHHHHHHHHH
Q 018851 211 EGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDA-LFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKR 289 (349)
Q Consensus 211 ~~g~~HPl~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDa-Lf~PqdHPARd~~DTFyl~~p~~~~~~p~~~~erVk~ 289 (349)
.+...+....+.+.++++|...||+|+.| |.+|.. ..|-. |----++... +.|-+.+
T Consensus 32 lP~~~~~~~~i~~~i~~~~~~~Gy~eI~t-P~le~~-el~~~s~~g~~~~~~~---~my~~~D----------------- 89 (344)
T 1z7m_A 32 TLNQVKSLRQIEGRLRKLFSLKNYQEVMP-PSFEYT-QLYTALESNGKTFNQE---KMFQFIK----------------- 89 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECCC-CSEEEH-HHHHHHHCSSSCCCTT---SCCEEEC-----------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEEecC-cccCcH-HHHhhccCCccccccc---cEEEEEC-----------------
Confidence 34556778899999999999999999985 777664 12211 1000112222 2343333
Q ss_pred HhhcCCCCCCCcccccchhhhhccccCCCCchhHHHHHHHhhcCCCCCceEEecCceecC
Q 018851 290 VHESGGYGSRGYGYEWKREEANKNLLRTHTTAVSSRMLKALAEKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 290 vHe~Gg~gS~Gw~Y~W~~~~a~~~vLRTHTTavs~r~L~~l~~~~~~p~k~fsi~rVfR~ 349 (349)
...+...||+.+|+..+|+.... ....|.|+|++|.|||.
T Consensus 90 ------------------~~g~~l~LRpd~T~~~aR~~~~~--~~~~P~rl~y~g~vfR~ 129 (344)
T 1z7m_A 90 ------------------HEGQSITLRYDFTLPLVRLYSQI--KDSTSARYSYFGKIFRK 129 (344)
T ss_dssp ------------------TTCCEEEECCCSHHHHHHHHHTC--CSCCCEEEEEEEECCCC
T ss_pred ------------------CCCCEEecCCCCcHHHHHHHHhc--CCCCCeEEEEECcEEcc
Confidence 22347899999999999998743 22369999999999994
No 92
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=97.04 E-value=0.00098 Score=53.72 Aligned_cols=70 Identities=21% Similarity=0.117 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhC-----CCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeee--eEEEEeChhHHHHhhcCCh
Q 018851 2 AEEAILGYLEKN-----EQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIK--RETWVLTGEGKKYAAEGSP 71 (349)
Q Consensus 2 ~e~~iL~~L~~~-----~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~--~~~~~LTeEG~~~l~~G~P 71 (349)
.+..+|..|... +...+..+||+.++++...+.+.+..|+..|||.+.... .....||++|++.++.-.|
T Consensus 17 ~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~rLe~~GLV~r~~~~D~R~~v~LT~~G~~~l~~~~p 93 (96)
T 2obp_A 17 AIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAALAAQLFP 93 (96)
T ss_dssp HHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHHHHHCCCEEeecCCCCceeEEECHHHHHHHHHhcC
Confidence 356777767543 122577899999999999999999999999999985542 2257999999999887665
No 93
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=97.03 E-value=0.0011 Score=54.44 Aligned_cols=66 Identities=20% Similarity=0.251 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHh------C--CCH-HHHHHHHHHhccCCcEEEEee-----eeEEEEeChhHHHHhh
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAER------G--FDH-NDVVNVIKSLHGFRYIDAQDI-----KRETWVLTGEGKKYAA 67 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~------g--~~~-~~v~~~~~~L~~kgli~~~~~-----~~~~~~LTeEG~~~l~ 67 (349)
++..||..|...+ ....++++.+ + +++ ..|...++.|+.+|+|+.... ....|.||+.|++.+.
T Consensus 14 ~~~~IL~~L~~~~--~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~~G~~~l~ 91 (118)
T 2esh_A 14 LASTILLLVAEKP--SHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLYLR 91 (118)
T ss_dssp HHHHHHHHHHHSC--BCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHcCC--CCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEChHHHHHHH
Confidence 4678999997643 4667888876 3 888 999999999999999988753 4568999999999886
Q ss_pred cC
Q 018851 68 EG 69 (349)
Q Consensus 68 ~G 69 (349)
+-
T Consensus 92 ~~ 93 (118)
T 2esh_A 92 EI 93 (118)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 94
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=97.00 E-value=0.00031 Score=70.27 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=23.1
Q ss_pred CCChHHHHHHHHHHHHhhCCceecCCCCceeeeehhhhccCCCCCCCCCCCCCeeeec
Q 018851 214 HLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLE 271 (349)
Q Consensus 214 ~~HPl~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDaLf~PqdHPARd~~DTFyl~ 271 (349)
..+.-.++++.||++|.++||.|+.| |.++++ ..|+|+++-+|.|.+
T Consensus 124 ~~~~rs~i~~~ir~~f~~~gF~EV~T-Pil~~~----------~~e~~~~~f~~~~~g 170 (422)
T 1n9w_A 124 PLKVQAALVRGFRRYLDRQDFTEIFT-PKVVRA----------GAEGGSGLFGVDYFE 170 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCC-C------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEC-CEEEEe----------CCCCCceeEEEeeCC
Confidence 34666789999999999999999984 888876 589999987776554
No 95
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=96.99 E-value=0.001 Score=53.75 Aligned_cols=67 Identities=15% Similarity=0.164 Sum_probs=54.2
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhC----CCHHHHHHHHHHhccCCcEEEEeee--eEEEEeChhHHHHhhcC
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERG----FDHNDVVNVIKSLHGFRYIDAQDIK--RETWVLTGEGKKYAAEG 69 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g----~~~~~v~~~~~~L~~kgli~~~~~~--~~~~~LTeEG~~~l~~G 69 (349)
.|..||..|...+. .+..++|+.++ ++...|.+.+..|+.+|+|...... ...+.||++|+.+++.-
T Consensus 11 ~~~~vL~~l~~~~~-~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~~~rr~~~~~lT~~g~~~~~~~ 83 (123)
T 1okr_A 11 AEWEVMNIIWMKKY-ASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYKTS 83 (123)
T ss_dssp HHHHHHHHHHHHSS-EEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEecCCeEEEEEecCHHHHHHHHH
Confidence 46789999987655 67789999988 7799999999999999999876542 23468999999887543
No 96
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=96.97 E-value=0.0016 Score=60.57 Aligned_cols=112 Identities=14% Similarity=0.152 Sum_probs=86.0
Q ss_pred HHHHHHHHhhCC-CCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeee----eEEEEeChhHHHHh-----------
Q 018851 3 EEAILGYLEKNE-QISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIK----RETWVLTGEGKKYA----------- 66 (349)
Q Consensus 3 e~~iL~~L~~~~-~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~----~~~~~LTeEG~~~l----------- 66 (349)
|..||..|...+ ...+..+||+.++++...+.+.++.|+.+|+|.-.... ...+.||++|++.+
T Consensus 36 q~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~~~~~~~~~~~~~ 115 (250)
T 1p4x_A 36 EFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKIAERVTLFDQII 115 (250)
T ss_dssp HHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHHHHHHHHHHHHH
Confidence 678999997642 22567899999999999999999999999999775443 33789999999832
Q ss_pred -------------------------------------hcC--ChHHHHHHhcCcCC--CCCHHHHHhhc--CchhhhhHH
Q 018851 67 -------------------------------------AEG--SPEVQLFLAVPAEG--SISKDELQKKL--DPAVFKIGC 103 (349)
Q Consensus 67 -------------------------------------~~G--~PE~rl~~~l~~~g--~~~~~el~~~~--~~~~~~ig~ 103 (349)
..| .+|+.++..|...+ ++++.||.+.+ .++...-.+
T Consensus 116 eq~s~E~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v 195 (250)
T 1p4x_A 116 KQFNLADQSESQMIPKDSKEFLNLMMYTMYFKNIIKKHLTLSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRAL 195 (250)
T ss_dssp HHHHHHTTCCSSCSCCSHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHH
T ss_pred HHHhcccccccccchHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHH
Confidence 224 24677777775433 48899999875 455666788
Q ss_pred HHHhhCCcEee
Q 018851 104 SQAGKNKWVEM 114 (349)
Q Consensus 104 g~~~k~~wi~i 114 (349)
..+-++|||..
T Consensus 196 ~rLe~~GlV~R 206 (250)
T 1p4x_A 196 NNLKKQGYLIK 206 (250)
T ss_dssp HHHHHHTSSEE
T ss_pred HHHHHCCCEEe
Confidence 99999999976
No 97
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=96.95 E-value=0.0016 Score=54.59 Aligned_cols=61 Identities=13% Similarity=0.186 Sum_probs=50.6
Q ss_pred HHHHHHHhhCCCCCChHHHHHHh-CCCHHHHHHHHHHhccCCcEEEEee----eeEEEEeChhHHHHh
Q 018851 4 EAILGYLEKNEQISDSGNFAAER-GFDHNDVVNVIKSLHGFRYIDAQDI----KRETWVLTGEGKKYA 66 (349)
Q Consensus 4 ~~iL~~L~~~~~~~~~~~la~~~-g~~~~~v~~~~~~L~~kgli~~~~~----~~~~~~LTeEG~~~l 66 (349)
..||..|. .+. ....+|++.+ |++...+.+.++.|+.+|||.-... ....|.||+.|++.+
T Consensus 38 l~IL~~L~-~g~-~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~ 103 (131)
T 1yyv_A 38 VLILVALR-DGT-HRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVS 103 (131)
T ss_dssp HHHHHHGG-GCC-EEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHH
T ss_pred HHHHHHHH-cCC-CCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHHHH
Confidence 35788887 444 5678999999 7999999999999999999987654 356899999998865
No 98
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=96.93 E-value=0.0024 Score=53.35 Aligned_cols=68 Identities=13% Similarity=0.123 Sum_probs=53.6
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHH-----hCCCHHHHHHHHHHhccCCcEEEEee-----eeEEEEeChhHHHHhhcCCh
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAE-----RGFDHNDVVNVIKSLHGFRYIDAQDI-----KRETWVLTGEGKKYAAEGSP 71 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~-----~g~~~~~v~~~~~~L~~kgli~~~~~-----~~~~~~LTeEG~~~l~~G~P 71 (349)
++..||..|. .+ ..-+++.+. +++++..|...+..|+.+|+|+.... ....|.||+.|++++..-..
T Consensus 22 l~~~IL~lL~-~p--~~GYei~~~l~~~~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~LT~~Gr~~l~~~~~ 98 (123)
T 3ri2_A 22 LVMLVLSQLR-EP--AYGYALVKSLADHGIPIEANTLYPLMRRLESQGLLASEWDNGGSKPRKYYRTTDEGLRVLREVEA 98 (123)
T ss_dssp HHHHHHHHTT-SC--EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CC--CCHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEEEeccCCCCCceEEEECHHHHHHHHHHHH
Confidence 4567888887 33 355677766 48999999999999999999998753 45689999999999976443
Q ss_pred H
Q 018851 72 E 72 (349)
Q Consensus 72 E 72 (349)
+
T Consensus 99 ~ 99 (123)
T 3ri2_A 99 Q 99 (123)
T ss_dssp H
T ss_pred H
Confidence 3
No 99
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=96.91 E-value=0.0017 Score=56.83 Aligned_cols=65 Identities=15% Similarity=0.191 Sum_probs=52.7
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHh--------CCCHHHHHHHHHHhccCCcEEEEee------eeEEEEeChhHHHHhh
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAER--------GFDHNDVVNVIKSLHGFRYIDAQDI------KRETWVLTGEGKKYAA 67 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~--------g~~~~~v~~~~~~L~~kgli~~~~~------~~~~~~LTeEG~~~l~ 67 (349)
++..||..|... . ...+++++.+ ++++.+|...++.|+.+|+|+.... ....|.||+.|++.+.
T Consensus 3 l~~~iL~lL~~~-~-~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~~~l~ 80 (179)
T 1yg2_A 3 LPHVILTVLSTR-D-ATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRSALG 80 (179)
T ss_dssp HHHHHHHHHHHC-C-BCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHHHHH
T ss_pred hHHHHHHHHhcC-C-CCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHHHHHH
Confidence 678899999863 3 5778998877 6999999999999999999987543 3568999999999875
Q ss_pred c
Q 018851 68 E 68 (349)
Q Consensus 68 ~ 68 (349)
+
T Consensus 81 ~ 81 (179)
T 1yg2_A 81 E 81 (179)
T ss_dssp H
T ss_pred H
Confidence 4
No 100
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=96.90 E-value=0.00084 Score=56.77 Aligned_cols=70 Identities=13% Similarity=0.126 Sum_probs=50.7
Q ss_pred HHHHHHHHhhCCC----CCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeee---eEEEEeChhHHHHhhcCChH
Q 018851 3 EEAILGYLEKNEQ----ISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIK---RETWVLTGEGKKYAAEGSPE 72 (349)
Q Consensus 3 e~~iL~~L~~~~~----~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~---~~~~~LTeEG~~~l~~G~PE 72 (349)
|..||..|...+. ..+..+||+.+++++..|.+.+..|+.+|||...... ...+.||++|++.++.-.|.
T Consensus 35 q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr~~~~~DrR~~~v~LT~~G~~~~~~~~~~ 111 (148)
T 4fx0_A 35 QFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRRDGLVRVMAGADARCKRIELTAKGRAALQKAVPL 111 (148)
T ss_dssp HHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC-----------CCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeeCCCCCCeeEEEECHHHHHHHHHHHHH
Confidence 5678888865432 2467899999999999999999999999999653322 23689999999999887664
No 101
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=96.90 E-value=0.0015 Score=54.24 Aligned_cols=61 Identities=20% Similarity=0.251 Sum_probs=49.5
Q ss_pred HHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHHHhhcC
Q 018851 6 ILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAAEG 69 (349)
Q Consensus 6 iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~l~~G 69 (349)
|+..+...+. .+..++|+.+|++...|.+.+..|+.+|+|..... ..+.||+.|++.+..-
T Consensus 13 i~~l~~~~~~-~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~~~--~~~~LT~~g~~~~~~~ 73 (142)
T 1on2_A 13 IYMLIEEKGY-ARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKY--RGLVLTSKGKKIGKRL 73 (142)
T ss_dssp HHHHHHHHSS-CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETT--TEEEECHHHHHHHHHH
T ss_pred HHHHHhhcCC-CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeeC--ceEEEchhHHHHHHHH
Confidence 4444444444 67889999999999999999999999999987643 5799999999988653
No 102
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=96.87 E-value=0.0016 Score=48.50 Aligned_cols=55 Identities=13% Similarity=0.144 Sum_probs=45.2
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeC
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLT 59 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LT 59 (349)
..+||..|...+...+..+||+.+|++.+.|.+.++.|++.|+|.. ...-.|.|+
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~--~~~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS--PSPKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE--EETTEEEEC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec--CCCceEeeC
Confidence 5679999987654467899999999999999999999999999755 333467775
No 103
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=96.87 E-value=0.0012 Score=58.99 Aligned_cols=66 Identities=18% Similarity=0.084 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee----eeEEEEeChhHHHHhhc
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI----KRETWVLTGEGKKYAAE 68 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~----~~~~~~LTeEG~~~l~~ 68 (349)
.+..||..|...+. .+..+||+.+|++...|.+.+..|+.+|||.-... -...+.||++|+++++.
T Consensus 49 ~q~~iL~~L~~~~~-~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~ 118 (207)
T 2fxa_A 49 NEHHILWIAYQLNG-ASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFWS 118 (207)
T ss_dssp HHHHHHHHHHHHTS-EEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHHHH
Confidence 36778999987665 56789999999999999999999999999987653 23478999999998865
No 104
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=96.86 E-value=0.0013 Score=59.47 Aligned_cols=61 Identities=15% Similarity=0.098 Sum_probs=51.7
Q ss_pred CCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHHHhhcCChHHHHHHh
Q 018851 16 ISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAAEGSPEVQLFLA 78 (349)
Q Consensus 16 ~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~l~~G~PE~rl~~~ 78 (349)
..+..+||+.+|++...|.++++.|+.+|||..+.. ..+.||++|++.+..=..-.++++.
T Consensus 20 ~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~~--~~i~LT~~G~~~~~~~~~~h~~~e~ 80 (214)
T 3hrs_A 20 KITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDKK--AGYLLTDLGLKLVSDLYRKHRLIEV 80 (214)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT--TEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEecC--CCeEECHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999999999999988764 5789999999998776665665543
No 105
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=96.80 E-value=0.0029 Score=53.77 Aligned_cols=61 Identities=16% Similarity=0.195 Sum_probs=50.6
Q ss_pred HHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeee---eEEEEeChhHHHHh
Q 018851 4 EAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIK---RETWVLTGEGKKYA 66 (349)
Q Consensus 4 ~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~---~~~~~LTeEG~~~l 66 (349)
..||..|. .+. ....+|++.+|++...+.+.++.|+++|||+-.... ...|.||+.|++.+
T Consensus 27 l~IL~~L~-~g~-~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~G~~l~ 90 (146)
T 2f2e_A 27 MLIVRDAF-EGL-TRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRALF 90 (146)
T ss_dssp HHHHHHHH-TTC-CSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTTH
T ss_pred HHHHHHHH-hCC-CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEECchHHHHH
Confidence 35788886 444 567899999999999999999999999999876532 46999999998755
No 106
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=96.79 E-value=0.0042 Score=50.94 Aligned_cols=63 Identities=21% Similarity=0.133 Sum_probs=48.7
Q ss_pred HHHHHhhCCCCCChHHHHHHh-------CCCHHHHHHHHHHhccCCcEEEEee-------eeEEEEeChhHHHHhhcCC
Q 018851 6 ILGYLEKNEQISDSGNFAAER-------GFDHNDVVNVIKSLHGFRYIDAQDI-------KRETWVLTGEGKKYAAEGS 70 (349)
Q Consensus 6 iL~~L~~~~~~~~~~~la~~~-------g~~~~~v~~~~~~L~~kgli~~~~~-------~~~~~~LTeEG~~~l~~G~ 70 (349)
||..|...+ ..-.++.+.+ ++++..|..+++.|+.+|+|+.... ....|.||+.|++.+.+-.
T Consensus 27 IL~lL~~~~--~~Gyei~~~l~~~~~~~~is~gtLY~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~ 103 (115)
T 2dql_A 27 ILYVLLQGE--SYGTELIQQLETEHPTYRLSDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSPEWQHQAEDLA 103 (115)
T ss_dssp HHHHHTTSC--BCHHHHHHHHHHHCTTEECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECGGGHHHHHHHH
T ss_pred HHHHHHhCC--CCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHCCCEEEEeeecCCCCCCcEEEEECHHHHHHHHHHH
Confidence 788886533 3445655443 5899999999999999999988643 3578999999999886643
No 107
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=96.79 E-value=0.0041 Score=49.43 Aligned_cols=64 Identities=11% Similarity=0.191 Sum_probs=53.0
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee-eeEEEEeChhHHHHhhc
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI-KRETWVLTGEGKKYAAE 68 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~-~~~~~~LTeEG~~~l~~ 68 (349)
...||..|. .+. .+..++|+.+|++...|.+.++.|+..|+|..... ....|.||+.|.+.+..
T Consensus 23 r~~IL~~L~-~~~-~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~~~~~~ 87 (114)
T 2oqg_A 23 RWEILTELG-RAD-QSASSLATRLPVSRQAIAKHLNALQACGLVESVKVGREIRYRALGAELNKTAR 87 (114)
T ss_dssp HHHHHHHHH-HSC-BCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHH
T ss_pred HHHHHHHHH-cCC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEecCCEEEEEechHHHHHHHH
Confidence 457888884 444 57889999999999999999999999999987654 45689999999876644
No 108
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=96.77 E-value=0.0033 Score=53.14 Aligned_cols=60 Identities=8% Similarity=0.103 Sum_probs=50.2
Q ss_pred HHHHHHhhCCCCCChHHHHHHh-CCCHHHHHHHHHHhccCCcEEEEeee----eEEEEeChhHHHHh
Q 018851 5 AILGYLEKNEQISDSGNFAAER-GFDHNDVVNVIKSLHGFRYIDAQDIK----RETWVLTGEGKKYA 66 (349)
Q Consensus 5 ~iL~~L~~~~~~~~~~~la~~~-g~~~~~v~~~~~~L~~kgli~~~~~~----~~~~~LTeEG~~~l 66 (349)
.||..|. .+. ....+|++.+ |++...+.+.++.|++.|||+-.... ...|.||+.|++.+
T Consensus 30 ~IL~~L~-~g~-~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~ 94 (131)
T 4a5n_A 30 ILFYHMI-DGK-KRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLE 94 (131)
T ss_dssp HHHHHHT-TSC-BCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGH
T ss_pred HHHHHHh-cCC-cCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHH
Confidence 5777776 444 5678999999 99999999999999999999876543 46899999999855
No 109
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=96.77 E-value=0.002 Score=59.81 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHHHhh
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAA 67 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~l~ 67 (349)
.+..||..|...+. .+..++|+.+|++..++.+.++.|+.+|+|....+ ...|.||+.|++.++
T Consensus 153 ~~~~IL~~L~~~~~-~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~~r-~~~~~LT~~G~~l~~ 216 (244)
T 2wte_A 153 EEMKLLNVLYETKG-TGITELAKMLDKSEKTLINKIAELKKFGILTQKGK-DRKVELNELGLNVIK 216 (244)
T ss_dssp HHHHHHHHHHHHTC-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT-TTEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC-ccEEEECHHHHHHHH
Confidence 36789999876665 67889999999999999999999999999988633 458999999999753
No 110
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=96.76 E-value=0.0027 Score=62.33 Aligned_cols=97 Identities=16% Similarity=0.198 Sum_probs=65.3
Q ss_pred CCCCCChHHHHHHHHHHHHhhCCceecCCCCceeeeehhhhccCCCCCCCCCCCCCeeeecCCCCCCCCCHHHHHHHHHH
Q 018851 211 EGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRV 290 (349)
Q Consensus 211 ~~g~~HPl~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDaLf~PqdHPARd~~DTFyl~~p~~~~~~p~~~~erVk~v 290 (349)
.+........+.+.++++|...||+++.| |.+|.. |.+-.--++.. ..++|-+.++.
T Consensus 33 lP~~~~~~~~i~~~i~~~f~~~Gy~eI~t-P~le~~----el~~~~g~~~~--~~~my~~~D~~---------------- 89 (373)
T 3rac_A 33 YPDFAKRRRAVETRLLSFVEDAGYEPVTS-GLFEYV----DTLLRARSPES--SRDWIRLFDGG---------------- 89 (373)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHTTCEECCC-CSEEEH----HHHHTTSCTTS--CCCCCBCCCCS----------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCeEEEC-CceeeH----HHHhhcCCccc--hhceEEEECCC----------------
Confidence 34444567889999999999999999975 777643 22211112211 13455554421
Q ss_pred hhcCCCCCCCcccccchhhhhccccCCCCchhHHHHHHHhhcCCCCCceEEecCceecC
Q 018851 291 HESGGYGSRGYGYEWKREEANKNLLRTHTTAVSSRMLKALAEKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 291 He~Gg~gS~Gw~Y~W~~~~a~~~vLRTHTTavs~r~L~~l~~~~~~p~k~fsi~rVfR~ 349 (349)
.+...||...|+.-+|++...-.....|.|+|++|.|||.
T Consensus 90 -------------------g~~l~LRpd~T~~~aR~~~~~~~~~~~P~r~~y~g~vfR~ 129 (373)
T 3rac_A 90 -------------------GDAVALRPEMTPSIARMAAPRVAAGRTPIRWCYCERVYRR 129 (373)
T ss_dssp -------------------SSCEEECSSSHHHHHHHHHHHHHTTCCCCEEEEEEEEEEC
T ss_pred -------------------CCEEEECCcCHHHHHHHHHhccccCCCCeEEEEEcceEcc
Confidence 2368999999999999986532223469999999999994
No 111
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=96.74 E-value=0.0022 Score=49.91 Aligned_cols=61 Identities=16% Similarity=0.267 Sum_probs=49.0
Q ss_pred HHHHHHHHHhhCC--CCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhH
Q 018851 2 AEEAILGYLEKNE--QISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEG 62 (349)
Q Consensus 2 ~e~~iL~~L~~~~--~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG 62 (349)
.+.+||.+|...+ ...+..+||+.+|++...|.+.+..|+..|+|.......-.|.+++-.
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~~~~~W~i~~~~ 73 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWKIAVST 73 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESSSSCEEEEC---
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCeeEEeCcH
Confidence 4788999998776 126778999999999999999999999999998765545688877543
No 112
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=96.64 E-value=0.0026 Score=49.78 Aligned_cols=56 Identities=21% Similarity=0.298 Sum_probs=47.8
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHH
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKK 64 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~ 64 (349)
..+||..| . +. .+..++|+.+|++...|.+.++.|+..|+|.... ..|.||++|+.
T Consensus 33 r~~Il~~L-~-~~-~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~---g~y~l~~~g~~ 88 (96)
T 1y0u_A 33 RRKILRML-D-KG-RSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG---ERWVVTDAGKI 88 (96)
T ss_dssp HHHHHHHH-H-TT-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET---TEEEECTTTCC
T ss_pred HHHHHHHH-c-CC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC---CEEEECCCchH
Confidence 45788888 4 33 5788999999999999999999999999998776 39999999854
No 113
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=96.61 E-value=0.00048 Score=59.61 Aligned_cols=72 Identities=17% Similarity=0.104 Sum_probs=57.3
Q ss_pred HHHHHHHHHhhCCCC--CChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee----eeEEEEeChhHHHHhhcCChHH
Q 018851 2 AEEAILGYLEKNEQI--SDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI----KRETWVLTGEGKKYAAEGSPEV 73 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~--~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~----~~~~~~LTeEG~~~l~~G~PE~ 73 (349)
.+..||..|...+.. .+..+||+.+|++...|.+.+..|+.+|+|..... ....+.||++|++++..-.+..
T Consensus 70 ~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~~~~~ 147 (181)
T 2fbk_A 70 AGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVTHLLPAH 147 (181)
T ss_dssp HHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHHHHHHHHH
Confidence 367899999875532 57889999999999999999999999999987532 2346899999999998765543
No 114
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=96.60 E-value=0.0028 Score=51.05 Aligned_cols=66 Identities=18% Similarity=0.126 Sum_probs=49.4
Q ss_pred HHHHHHHhhCCCCCCh----HHHHHHh--CCCHHHHHHHHHHhccCCcEEEEee-eeEEEEeChhHHHHhhcC
Q 018851 4 EAILGYLEKNEQISDS----GNFAAER--GFDHNDVVNVIKSLHGFRYIDAQDI-KRETWVLTGEGKKYAAEG 69 (349)
Q Consensus 4 ~~iL~~L~~~~~~~~~----~~la~~~--g~~~~~v~~~~~~L~~kgli~~~~~-~~~~~~LTeEG~~~l~~G 69 (349)
+.||..|...+...+- .++++.. .+++.+|..+++.|+.+|+|+.... ....|.||++|++.+++-
T Consensus 12 ~~IL~lL~~~~~~~~g~~i~~ei~~~~~~~is~GtlYp~L~rLe~~GlI~~~~~~~rk~Y~iT~~Gr~~l~~~ 84 (99)
T 2co5_A 12 YIILKVLVINGSRLEKKRLRSEILKRFDIDISDGVLYPLIDSLIDDKILREEEAPDGKVLFLTEKGMKEFEEL 84 (99)
T ss_dssp HHHHHHHHHTTTEEEGGGHHHHHHHHHCCBCCHHHHHHHHHHHHHTTSEEEECCTTSCEEEECHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHCCCEEEeeCCCcEEEEECHHHHHHHHHH
Confidence 5588888644321222 4555555 5899999999999999999998753 456899999999998763
No 115
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=96.60 E-value=0.004 Score=56.41 Aligned_cols=49 Identities=14% Similarity=0.224 Sum_probs=43.6
Q ss_pred CChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHHHhhc
Q 018851 17 SDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAAE 68 (349)
Q Consensus 17 ~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~l~~ 68 (349)
....++|+.+|+++.+|...++.|+++|||+.+. .-..||++|++++++
T Consensus 31 V~~~~LA~~LgvS~~SV~~~lkkL~e~GLV~~~~---~Gv~LTe~G~~~A~~ 79 (200)
T 2p8t_A 31 LGRKQISERLELGEGSVRTLLRKLSHLDIIRSKQ---RGHFLTLKGKEIRDK 79 (200)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-----CEEECHHHHHHHHH
T ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeC---CCeEECHHHHHHHHH
Confidence 6778999999999999999999999999999987 689999999998843
No 116
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=96.60 E-value=0.0017 Score=63.67 Aligned_cols=94 Identities=19% Similarity=0.297 Sum_probs=61.7
Q ss_pred CChHHHHHHHHHHHHhhCCceecCCCCceeeeehhhhccCCCC--CCCCCCCCCeeeecCCCCCCCCCHHHHHHHHHHhh
Q 018851 215 LHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQ--QHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHE 292 (349)
Q Consensus 215 ~HPl~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDaLf~Pq--dHPARd~~DTFyl~~p~~~~~~p~~~~erVk~vHe 292 (349)
.+....+.+.++++|...||+++.+ |.++.. | ||... .|...-..+.|-+.+
T Consensus 16 ~~~~~~i~~~~~~~~~~~G~~ei~t-P~l~~~----~-l~~~~~g~~~~~~~~~m~~~~D-------------------- 69 (420)
T 1qe0_A 16 SKKWRYIENQLDELMTFYNYKEIRT-PIFEST----D-LFARGVGDSTDVVQKEMYTFKD-------------------- 69 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEECBC-CSEEEH----H-HHCC-----------CCEEECH--------------------
T ss_pred HHHHHHHHHHHHHHHHHcCCEEccC-cccchH----H-HhhhccCCccchhhhheEEEEc--------------------
Confidence 3457888999999999999999985 777553 3 44554 443222223455532
Q ss_pred cCCCCCCCcccccchhhhhccccCCCCchhHHHHHHHhh-cC-CCCCceEEecCceecC
Q 018851 293 SGGYGSRGYGYEWKREEANKNLLRTHTTAVSSRMLKALA-EK-PFAPKKVFLHRSCFQK 349 (349)
Q Consensus 293 ~Gg~gS~Gw~Y~W~~~~a~~~vLRTHTTavs~r~L~~l~-~~-~~~p~k~fsi~rVfR~ 349 (349)
...+...||+.+|+.-+|++.... +. ...|.|+|.+++|||.
T Consensus 70 ---------------~~g~~~~Lrp~~t~~~~r~~~~~~~~~~~~lP~r~~~~g~vfR~ 113 (420)
T 1qe0_A 70 ---------------KGDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRY 113 (420)
T ss_dssp ---------------HHHCCEEECSCSHHHHHHHHHHTTGGGCSSCSEEEEEEEEEECC
T ss_pred ---------------CCCCEEEeCCCChHHHHHHHHhccccccCCCCeEEEEecCEeec
Confidence 112468999999999999886432 11 2369999999999994
No 117
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=96.60 E-value=0.0018 Score=49.77 Aligned_cols=58 Identities=17% Similarity=0.280 Sum_probs=48.4
Q ss_pred HHHHHHHHHhhCC---CCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeCh
Q 018851 2 AEEAILGYLEKNE---QISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTG 60 (349)
Q Consensus 2 ~e~~iL~~L~~~~---~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTe 60 (349)
.+.+||.+|...+ . .+..+||+.+|++...|.+.+..|+.+|+|.......-.|.+++
T Consensus 15 ~~~~IL~~L~~~~~~~~-~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~~~~W~i~~ 75 (77)
T 1qgp_A 15 QEQRILKFLEELGEGKA-TTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHHCSSSC-EEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSSSCEEEECC
T ss_pred HHHHHHHHHHHcCCCCC-cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCceEecC
Confidence 4688999998776 4 56789999999999999999999999999987654445777654
No 118
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=96.43 E-value=0.0057 Score=51.47 Aligned_cols=61 Identities=25% Similarity=0.308 Sum_probs=49.5
Q ss_pred HHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHHHhhc
Q 018851 5 AILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAAE 68 (349)
Q Consensus 5 ~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~l~~ 68 (349)
.|+..+...+. .+..++|+.+|++...|.+++..|+.+|+|..... ..+.||+.|+..+..
T Consensus 44 ~i~~~l~~~~~-~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~~~--~~~~lT~~g~~~~~~ 104 (155)
T 2h09_A 44 LISDLIREVGE-ARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPW--RGVFLTAEGEKLAQE 104 (155)
T ss_dssp HHHHHHHHHSC-CCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEETT--TEEEECHHHHHHHHH
T ss_pred HHHHHHHhCCC-cCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEecC--CceEEChhHHHHHHH
Confidence 45556655555 56789999999999999999999999999876543 578999999987755
No 119
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=96.39 E-value=0.0032 Score=48.85 Aligned_cols=56 Identities=16% Similarity=0.194 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeC
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLT 59 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LT 59 (349)
++.+||++|.+.+.+..+-++|+.+|+|..+|..+++.|...|.|.... .=+|.++
T Consensus 20 ~eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI~SPk--RCyw~~~ 75 (80)
T 2lnb_A 20 LEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSLTS--PATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE--TTEEEES
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCccCCC--CceeeCC
Confidence 5889999999988888999999999999999999999999999987663 3367776
No 120
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=96.33 E-value=0.0058 Score=47.68 Aligned_cols=63 Identities=14% Similarity=0.162 Sum_probs=52.2
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee-eeEEEEeChhHHHHhh
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI-KRETWVLTGEGKKYAA 67 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~-~~~~~~LTeEG~~~l~ 67 (349)
..+||..|.. +. .+..++|+.+|++...|.+.++.|+..|+|..+.. ....|.||+++...+.
T Consensus 25 r~~Il~~L~~-~~-~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~l~ 88 (98)
T 3jth_A 25 RLQILCMLHN-QE-LSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSEEVKAMI 88 (98)
T ss_dssp HHHHHHHTTT-SC-EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCCEEEECCHHHHHHH
T ss_pred HHHHHHHHhc-CC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECHHHHHHHH
Confidence 3568888876 44 57889999999999999999999999999988765 3458999999876553
No 121
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=96.30 E-value=0.0035 Score=58.25 Aligned_cols=71 Identities=11% Similarity=0.099 Sum_probs=57.9
Q ss_pred HHHHHHHHHhhCCC-CCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee----eeEEEEeChhHHHHhhcCChH
Q 018851 2 AEEAILGYLEKNEQ-ISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI----KRETWVLTGEGKKYAAEGSPE 72 (349)
Q Consensus 2 ~e~~iL~~L~~~~~-~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~----~~~~~~LTeEG~~~l~~G~PE 72 (349)
.|..||..|...+. ..+..+||+.++++...+.+.+..|+.+|+|.-+.. -...+.||++|++.++.-.|.
T Consensus 159 ~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~~~~~~~ 234 (250)
T 1p4x_A 159 VEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAEQLLAQ 234 (250)
T ss_dssp HHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHHHHHHHH
Confidence 36789999976552 356789999999999999999999999999988654 334889999999988765443
No 122
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=96.27 E-value=0.0077 Score=48.97 Aligned_cols=69 Identities=16% Similarity=0.148 Sum_probs=56.5
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee-eeEEEEeChhHHHHhhcCChHH
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI-KRETWVLTGEGKKYAAEGSPEV 73 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~-~~~~~~LTeEG~~~l~~G~PE~ 73 (349)
-.+||..|.. +. .+..+||+.+|++...|...++.|+..|+|..+.. ....|.||++|...+.+-+.++
T Consensus 20 R~~Il~~L~~-~~-~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~~~~~~ 89 (118)
T 3f6o_A 20 RRAVLGRLSR-GP-ATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEPFTAVEAWLAEQ 89 (118)
T ss_dssp HHHHHHHHHT-CC-EEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CC-CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecCCEEEEEECHHHHHHHHHHHHHH
Confidence 3568888874 44 57789999999999999999999999999988765 4568999999988776554444
No 123
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=96.16 E-value=0.024 Score=45.71 Aligned_cols=60 Identities=12% Similarity=0.098 Sum_probs=46.8
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhC----CCHHHHHHHHHHhccCCcEEEEeeeeE-EEE-eChhH
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERG----FDHNDVVNVIKSLHGFRYIDAQDIKRE-TWV-LTGEG 62 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g----~~~~~v~~~~~~L~~kgli~~~~~~~~-~~~-LTeEG 62 (349)
.|..||..|...+. .+..++|+.++ +++..|.+.+..|+.||+|.-+..... .|. +|.+|
T Consensus 11 ~q~~vL~~L~~~~~-~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~~~r~~~~~~~~~~~ 76 (126)
T 1sd4_A 11 AEWDVMNIIWDKKS-VSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKSENIYFYSSNIKED 76 (126)
T ss_dssp HHHHHHHHHHHSSS-EEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSCHH
T ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEeCCCeEEEEEecCHH
Confidence 47889999988776 67789999886 589999999999999999988664332 343 44554
No 124
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=96.15 E-value=0.009 Score=60.09 Aligned_cols=91 Identities=16% Similarity=0.220 Sum_probs=62.2
Q ss_pred ChHHHHHHHHHHHHhhCCceecCCCCceeeeehhhhccCCCCCCCCCCC-CCeeeecCCCCCCCCCHHHHHHHHHHhhcC
Q 018851 216 HPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDS-HDTFFLEEPSTTRELPEDYVERVKRVHESG 294 (349)
Q Consensus 216 HPl~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDaLf~PqdHPARd~-~DTFyl~~p~~~~~~p~~~~erVk~vHe~G 294 (349)
.-...+.+.++++|...||+++.| |.+|. +|.+-.-..| +. ..+|-+.++
T Consensus 44 ~~~~~i~~~i~~~~~~~Gy~eI~t-P~lE~----~el~~~~~G~---~~~~~my~f~D~--------------------- 94 (456)
T 3lc0_A 44 RCRRHLFDVFHATAKTFGFEEYDA-PVLES----EELYIRKAGE---EITEQMFNFITK--------------------- 94 (456)
T ss_dssp HHHHHHHHHHHHHHHHTTCEECCC-CSEEE----GGGGCCCSCC---HHHHTCEEEECS---------------------
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEC-CcEee----hhhhcccccc---chhhceEEEEcC---------------------
Confidence 456778899999999999999975 66654 3333111122 11 224555432
Q ss_pred CCCCCCcccccchhhhhccccCCCCchhHHHHHHHhhcCCCCCceEEecCceecC
Q 018851 295 GYGSRGYGYEWKREEANKNLLRTHTTAVSSRMLKALAEKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 295 g~gS~Gw~Y~W~~~~a~~~vLRTHTTavs~r~L~~l~~~~~~p~k~fsi~rVfR~ 349 (349)
..+.+.||...|+.-+|+..........|.|+|++|.|||.
T Consensus 95 --------------~g~~l~LRpd~T~~~aR~~~~~~~~~~~P~r~~y~g~vfR~ 135 (456)
T 3lc0_A 95 --------------GGHRVALRPEMTPSLARLLLGKGRSLLLPAKWYSIPQCWRY 135 (456)
T ss_dssp --------------SSCEEEECSCSHHHHHHHHHHSCTTCCSSEEEEECCEEECC
T ss_pred --------------CCCEEecCCcCHHHHHHHHHhcCcccCCCEEEEEeccEEec
Confidence 12368999999999999987532222359999999999994
No 125
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=96.13 E-value=0.01 Score=47.63 Aligned_cols=62 Identities=16% Similarity=0.243 Sum_probs=50.8
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee-eeEEEEeChhHHHHh
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI-KRETWVLTGEGKKYA 66 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~-~~~~~~LTeEG~~~l 66 (349)
..+||..|.. +. .+..+||+.+|++...|.+.++.|+..|+|..+.. ....|.||++|..-+
T Consensus 27 r~~IL~~L~~-~~-~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l 89 (108)
T 2kko_A 27 RLQILDLLAQ-GE-RAVEAIATATGMNLTTASANLQALKSGGLVEARREGTRQYYRIAGEDVARL 89 (108)
T ss_dssp THHHHHHHTT-CC-EEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHHHHHHHHc-CC-cCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHH
Confidence 3578888874 44 57789999999999999999999999999987654 345899999986543
No 126
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=96.10 E-value=0.011 Score=50.74 Aligned_cols=64 Identities=11% Similarity=0.137 Sum_probs=53.7
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee-eeEEEEeChhHHHHhhc
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI-KRETWVLTGEGKKYAAE 68 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~-~~~~~~LTeEG~~~l~~ 68 (349)
-.+||..|. .+. .+..+||+.+|++...|..-++.|+..|||..+.. ....|.||++|...+.+
T Consensus 60 R~~IL~~L~-~~~-~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~Gr~~~y~lt~~~~~~l~~ 124 (151)
T 3f6v_A 60 RRRLVQLLT-SGE-QTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGLAQLRA 124 (151)
T ss_dssp HHHHHHHGG-GCC-EEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHH
T ss_pred HHHHHHHHH-hCC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHHH
Confidence 467899997 344 57889999999999999999999999999988765 44689999999887643
No 127
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=96.04 E-value=0.0055 Score=61.59 Aligned_cols=104 Identities=15% Similarity=0.181 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhhCCceecCCCCceeeeehhhhccCCCCCCCCCCCCCeeeecCCCCCCCCCHHHHHHHHHHhhcCCCC
Q 018851 218 LLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHESGGYG 297 (349)
Q Consensus 218 l~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDaLf~PqdHPARd~~DTFyl~~p~~~~~~p~~~~erVk~vHe~Gg~g 297 (349)
...+.+.++++|...||.++.| |.+|.. | ||.+.. . -+-+++|-+.+... +.+..+.. .
T Consensus 29 ~~~i~~~l~~~~~~~Gy~~i~t-P~~E~~----~-~~~~~G-~-~~ke~m~~~~d~~~----~g~~~~~~---------~ 87 (465)
T 3net_A 29 ELYLLDTIRRVYESYGFTPIET-PAVERL----E-VLQAKG-N-QGDNIIYGLEPILP----PNRQAEKD---------K 87 (465)
T ss_dssp HHHHHHHHHHHHHHTTCEECCC-CSEEEH----H-HHHGGG-C-C--CBEEEEEEEC-----------------------
T ss_pred HHHHHHHHHHHHHHcCCEEeec-cccccH----H-HHhccC-C-CCccceEEEecccc----cccccccc---------c
Confidence 5668888999999999999985 666543 2 233321 1 12233777765310 00000000 0
Q ss_pred CCCcccccchhhhhccccCCCCchhHHHHHHHhhcCCCCCceEEecCceecC
Q 018851 298 SRGYGYEWKREEANKNLLRTHTTAVSSRMLKALAEKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 298 S~Gw~Y~W~~~~a~~~vLRTHTTavs~r~L~~l~~~~~~p~k~fsi~rVfR~ 349 (349)
+. +| ..+.+.||...|+.-+|++.........|.|+|++|.|||.
T Consensus 88 ~~----~~---~g~~l~LRpd~T~~~aR~~~~~~~~~~~p~r~~y~g~vfR~ 132 (465)
T 3net_A 88 SG----DT---GSEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRG 132 (465)
T ss_dssp -------------CCEEECSCSHHHHHHHHHHHGGGSCSSEEEEECCEEECB
T ss_pred cc----CC---CCCEEEeCCCChHHHHHHHHhcccccCCCeEEEEeccEEec
Confidence 00 00 12368999999999999987653322369999999999994
No 128
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=96.03 E-value=0.0037 Score=49.03 Aligned_cols=59 Identities=10% Similarity=0.189 Sum_probs=50.2
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHH
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGK 63 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~ 63 (349)
-.+||..|..++ .+..+||+.+|++.+.|.+-+..|+..|+|.......-.|.||.+-.
T Consensus 19 ~~~IL~lL~~~g--~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~~~~PP~W~~~~~~~ 77 (82)
T 1oyi_A 19 VCEAIKTIGIEG--ATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSDDIPPRWFMTTEAD 77 (82)
T ss_dssp HHHHHHHHSSST--EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEECSSSSCEEESCC---
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCCCCcceeccCcc
Confidence 467999998655 67899999999999999999999999999999887778999987643
No 129
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=96.01 E-value=0.018 Score=46.89 Aligned_cols=62 Identities=23% Similarity=0.231 Sum_probs=50.6
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee-eeEEEEeChhHHHHh
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI-KRETWVLTGEGKKYA 66 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~-~~~~~~LTeEG~~~l 66 (349)
..+||..|.. +. .+..++|+.+|++...|.+.++.|+..|+|..+.. ....|.||+++..-+
T Consensus 23 r~~IL~~L~~-~~-~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~~~~~ 85 (118)
T 2jsc_A 23 RCRILVALLD-GV-CYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYEGRQVRYALADSHLARA 85 (118)
T ss_dssp HHHHHHHHHT-TC-CSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEECSSSEEEEESSHHHHHH
T ss_pred HHHHHHHHHc-CC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEECCEEEEEEChHHHHHH
Confidence 4678998874 43 46679999999999999999999999999987654 445899999876533
No 130
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=95.93 E-value=0.016 Score=47.45 Aligned_cols=63 Identities=14% Similarity=0.080 Sum_probs=50.4
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee-eeEEEEeChhHHHHh
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI-KRETWVLTGEGKKYA 66 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~-~~~~~~LTeEG~~~l 66 (349)
..+||..|...+. .+..++|+.+|++...|.+.++.|+..|+|..... ....|.||++|..-+
T Consensus 44 rl~IL~~L~~~~~-~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~~~ 107 (122)
T 1u2w_A 44 RAKITYALCQDEE-LCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEGKLALYSLGDEHIRQI 107 (122)
T ss_dssp HHHHHHHHHHSSC-EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC----CCEEEESCHHHHHH
T ss_pred HHHHHHHHHHCCC-cCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEECCEEEEEECHHHHHHH
Confidence 3578888875555 56789999999999999999999999999987654 345899999986544
No 131
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=95.91 E-value=0.011 Score=61.39 Aligned_cols=110 Identities=13% Similarity=0.061 Sum_probs=51.6
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhcc-----CCcEEEEeeeeEEEEeChhHHHHhhcC--------
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHG-----FRYIDAQDIKRETWVLTGEGKKYAAEG-------- 69 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~-----kgli~~~~~~~~~~~LTeEG~~~l~~G-------- 69 (349)
+..||..|...+. .+..++|+.+|++..++..+++.|.. +|+|+-.- ..|.|+++-...+.+.
T Consensus 432 ~~~iL~~l~~~~~-it~~~la~~l~~s~~~~~~~L~~L~~~~~~~~glie~~g---~~y~L~~~~~~~~~~~~~~~~~~~ 507 (583)
T 3lmm_A 432 IAIVLYLLFQRPF-ITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIAHD---GVWLLGNACREILRKVEPSPFSPV 507 (583)
T ss_dssp HHHHHHHHHHSSS-BCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEEET---TEEEECHHHHHHHTSCC-------
T ss_pred HHHHHHHHHHCCC-cCHHHHHHHhCcCHHHHHHHHHHHHhhhccccceEEEeC---CEEEECHHHHHHhccccccccccc
Confidence 4679999988887 67789999999999999999999998 78888764 5799999855544331
Q ss_pred -----Ch---HHHHHHhcCcCCCCCHHHHHhhc--CchhhhhHHHHHhhCCcEeeCc
Q 018851 70 -----SP---EVQLFLAVPAEGSISKDELQKKL--DPAVFKIGCSQAGKNKWVEMGK 116 (349)
Q Consensus 70 -----~P---E~rl~~~l~~~g~~~~~el~~~~--~~~~~~ig~g~~~k~~wi~i~~ 116 (349)
.| +..++++|...|.++..|+++.+ +...+.-.|..+.+.|.|...+
T Consensus 508 ~~~~~~~~~~~~~I~~~l~~~g~it~~di~~l~~ls~~qa~~~L~~Lv~~G~l~~~G 564 (583)
T 3lmm_A 508 RYLSTDQAELTNAAMLWLSEVGDLATSDLMAMCGVSRGTAKACVDGLVDEERVVAVG 564 (583)
T ss_dssp ---------------------------------------------------------
T ss_pred ccccCChhHHHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEeC
Confidence 11 34577888877778888888764 3445666777777777765543
No 132
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=95.90 E-value=0.0072 Score=59.79 Aligned_cols=89 Identities=15% Similarity=0.190 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhhCCceecCCCCceeeeehhhhccCCCCCCCCCCCCCeeeecCCCCCCCCCHHHHHHHHHHhhcCCCC
Q 018851 218 LLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHESGGYG 297 (349)
Q Consensus 218 l~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDaLf~PqdHPARd~~DTFyl~~p~~~~~~p~~~~erVk~vHe~Gg~g 297 (349)
...+.+.++++|..-||+++.| |.+|.. -.|-.- -++. ...+|-+.++.
T Consensus 27 ~~~i~~~l~~~~~~~Gy~eI~t-P~lE~~-el~~~~---g~~~---~~~my~f~D~~----------------------- 75 (400)
T 3od1_A 27 KKNICDQMTEEINLWGYDMIET-PTLEYY-ETVGVV---SAIL---DQQLFKLLDQQ----------------------- 75 (400)
T ss_dssp HHHHHHHHHHHHHHTTCEECBC-CSEEET-TTHHHH---SSSC---GGGSCEEECTT-----------------------
T ss_pred HHHHHHHHHHHHHHcCCEEEeC-CccccH-HHHhhc---CCcc---ccceEEEECCC-----------------------
Confidence 5678888999999999999985 777543 112111 1222 22356555421
Q ss_pred CCCcccccchhhhhccccCCCCchhHHHHHHHhhcCCCCCceEEecCceecC
Q 018851 298 SRGYGYEWKREEANKNLLRTHTTAVSSRMLKALAEKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 298 S~Gw~Y~W~~~~a~~~vLRTHTTavs~r~L~~l~~~~~~p~k~fsi~rVfR~ 349 (349)
.+.+.||...|+.-+|++...-.....|.|+|++|.|||.
T Consensus 76 ------------g~~l~LRpd~T~~~aR~~~~~~~~~~~P~r~~y~g~vfR~ 115 (400)
T 3od1_A 76 ------------GNTLVLRPDMTAPIARLVASSLKDRAYPLRLAYQSNVYRA 115 (400)
T ss_dssp ------------SCEEEECSCSHHHHHHHHHHHCSSSCSCEEEEEEEEEECC
T ss_pred ------------CCEEEECCCCHHHHHHHHHhhcccCCCCeEEEEEcCEEeC
Confidence 1368999999999999886532223469999999999994
No 133
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=95.90 E-value=0.03 Score=44.44 Aligned_cols=60 Identities=13% Similarity=0.225 Sum_probs=50.2
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee-eeEEEEeChhHHH
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI-KRETWVLTGEGKK 64 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~-~~~~~~LTeEG~~ 64 (349)
..+||..|. .+. .+..++|+.+|++...|.+.++.|+..|+|..... ....|.||+++..
T Consensus 28 r~~IL~~L~-~~~-~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~ 88 (106)
T 1r1u_A 28 RIRIMELLS-VSE-ASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVA 88 (106)
T ss_dssp HHHHHHHHH-HCC-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHHHH
T ss_pred HHHHHHHHH-hCC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHH
Confidence 457888887 343 57889999999999999999999999999987664 4458999999864
No 134
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=95.88 E-value=0.005 Score=60.83 Aligned_cols=65 Identities=14% Similarity=0.171 Sum_probs=54.7
Q ss_pred HHHHHHHHhhC--CCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee----eeEEEEeChhHHHHhhc
Q 018851 3 EEAILGYLEKN--EQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI----KRETWVLTGEGKKYAAE 68 (349)
Q Consensus 3 e~~iL~~L~~~--~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~----~~~~~~LTeEG~~~l~~ 68 (349)
|..||..|... +. .+..+||+.++++...|.+.+..|+.+|||.-+.. -...+.||++|++.+++
T Consensus 406 q~~vl~~l~~~~~~~-~~~~~l~~~~~~~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~~~~ 476 (487)
T 1hsj_A 406 EIYILNHILRSESNE-ISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQK 476 (487)
T ss_dssp HHHHHHHHHTCSCSE-EEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHHHH
T ss_pred HHHHHHHHHhCCCCC-cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHHHHH
Confidence 67899999876 55 56789999999999999999999999999976543 33488999999997654
No 135
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=95.85 E-value=0.014 Score=44.31 Aligned_cols=58 Identities=16% Similarity=0.306 Sum_probs=47.6
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee---eeEEEEeChh
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI---KRETWVLTGE 61 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~---~~~~~~LTeE 61 (349)
..+||..|...+. .+..++|+.+|++...|.+.+..|++.|+|..... ....|.++++
T Consensus 2 r~~Il~~L~~~~~-~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~~~~~gr~~~y~l~~~ 62 (81)
T 2htj_A 2 KNEILEFLNRHNG-GKTAEIAEALAVTDYQARYYLLLLEKAGMVQRSPLRRGMATYWFLKGE 62 (81)
T ss_dssp HHHHHHHHHHSCC-CCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEECCSSSSSCEEEESSC
T ss_pred HHHHHHHHHHcCC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeccCCCCcEEEEEChh
Confidence 4679999987765 67889999999999999999999999999985432 3347777765
No 136
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=95.85 E-value=0.0088 Score=54.21 Aligned_cols=55 Identities=11% Similarity=0.056 Sum_probs=46.7
Q ss_pred HHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHHHhhcCChHHHHH
Q 018851 20 GNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAAEGSPEVQLF 76 (349)
Q Consensus 20 ~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~l~~G~PE~rl~ 76 (349)
.++|+.+|++..+|.++++.|+.+|||..+.. ..+.||++|++.+..=..-.+++
T Consensus 28 ~~la~~l~vs~~tvs~~l~~Le~~GlV~r~~~--~~v~LT~~G~~~~~~~~~~~~~~ 82 (226)
T 2qq9_A 28 ARIAERLEQSGPTVSQTVARMERDGLVVVASD--RSLQMTPTGRTLATAVMRKHRLA 82 (226)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEECTT--SBEEECHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC--CCeEECHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999988653 57999999999887655544444
No 137
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=95.84 E-value=0.0097 Score=53.81 Aligned_cols=64 Identities=20% Similarity=0.232 Sum_probs=50.9
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHh--------CCCHHHHHHHHHHhccCCcEEEEee------eeEEEEeChhHHHHhhc
Q 018851 3 EEAILGYLEKNEQISDSGNFAAER--------GFDHNDVVNVIKSLHGFRYIDAQDI------KRETWVLTGEGKKYAAE 68 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~--------g~~~~~v~~~~~~L~~kgli~~~~~------~~~~~~LTeEG~~~l~~ 68 (349)
...||..|...+ ..-++|++.+ ++++.+|..+++.|+..|+|+.+.. ..+.|.||++|++.+.+
T Consensus 38 r~~IL~lL~~~p--~~GYeL~~~l~~~~~~~~~~s~g~lY~~L~rLe~~GlI~~~~~~~~~~p~rk~Y~iT~~Gr~~l~~ 115 (204)
T 3l9f_A 38 KDIILGILSKKE--RSGYEINDILQNQLSYFYDGTYGMIYPTLRKLEKDGKITKEVVIQDGRPNKNIYAITESGKKELAS 115 (204)
T ss_dssp HHHHHHHTSSCC--EEHHHHHHHHHHTSTTTEECCTTCHHHHHHHHHHTTSEEEEEECCTTSCCEEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHcCC--CCHHHHHHHHHHHhCCccCCCcchHHHHHHHHHHCCCeEEEeeccCCCCCceEEEEChHHHHHHHH
Confidence 457888886432 4567887765 5899999999999999999988653 36799999999998843
No 138
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=95.82 E-value=0.01 Score=46.70 Aligned_cols=61 Identities=11% Similarity=0.124 Sum_probs=50.6
Q ss_pred HHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee-eeEEEEeChhHHHHh
Q 018851 4 EAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI-KRETWVLTGEGKKYA 66 (349)
Q Consensus 4 ~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~-~~~~~~LTeEG~~~l 66 (349)
.+||..|.. +. .+..++|+.+|++...|...++.|+..|+|..+.. ....|.||+++..-+
T Consensus 26 ~~Il~~L~~-~~-~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~~ 87 (102)
T 3pqk_A 26 LMLVCTLVE-GE-FSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNIKQIFYRLTEAKAAQL 87 (102)
T ss_dssp HHHHHHHHT-CC-BCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSSSCCEEEECSSTHHHH
T ss_pred HHHHHHHHh-CC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECcHHHHHH
Confidence 468888864 44 67889999999999999999999999999988665 345899999876544
No 139
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=95.78 E-value=0.012 Score=50.01 Aligned_cols=63 Identities=13% Similarity=0.116 Sum_probs=48.2
Q ss_pred HHHHHHhhCCCCCChHHHHHHh-------CCCHHHHHHHHHHhccCCcEEEEee-------eeEEEEeChhHHHHhhcC
Q 018851 5 AILGYLEKNEQISDSGNFAAER-------GFDHNDVVNVIKSLHGFRYIDAQDI-------KRETWVLTGEGKKYAAEG 69 (349)
Q Consensus 5 ~iL~~L~~~~~~~~~~~la~~~-------g~~~~~v~~~~~~L~~kgli~~~~~-------~~~~~~LTeEG~~~l~~G 69 (349)
-||..|...+ ..-.++++.+ ++++..|...++.|+.+|+|+.... ....|.||+.|++++..-
T Consensus 38 ~IL~lL~~~~--~~Gyei~k~l~~~~~~~~is~gtLYp~L~rLe~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~~~ 114 (138)
T 2e1n_A 38 YVLAVLRHED--SYGTELIQHLETHWPNYRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDL 114 (138)
T ss_dssp HHHHHHTTSC--EEHHHHHHHHHHHSTTEECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEESCSCCHHHHHH
T ss_pred HHHHHHHhCC--CcHHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeecccCCCCCcEEEEECHHHHHHHHHH
Confidence 4788886533 2345555443 5899999999999999999988642 456899999999988663
No 140
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=95.76 E-value=0.011 Score=53.68 Aligned_cols=55 Identities=13% Similarity=0.071 Sum_probs=47.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHHHhhcCChHHHHH
Q 018851 20 GNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAAEGSPEVQLF 76 (349)
Q Consensus 20 ~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~l~~G~PE~rl~ 76 (349)
.+||+.+|++...|.++++.|+.+|||..... ..+.||+.|++.+..-.+-.+++
T Consensus 28 ~~La~~l~vs~~tvs~~l~~Le~~GlV~r~~~--~~v~LT~~G~~~~~~~~~~~~~~ 82 (230)
T 1fx7_A 28 ARIAERLDQSGPTVSQTVSRMERDGLLRVAGD--RHLELTEKGRALAIAVMRKHRLA 82 (230)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEECTT--SCEEECHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC--ccEEECHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999988664 47899999999887655544443
No 141
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=95.75 E-value=0.015 Score=57.59 Aligned_cols=87 Identities=17% Similarity=0.135 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHHhhCCceecCCCCceeeeehhhhccCCCCCCCCCCCCCeeeecCCCCCCCCCHHHHHHHHHHhhcCCC
Q 018851 217 PLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHESGGY 296 (349)
Q Consensus 217 Pl~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDaLf~PqdHPARd~~DTFyl~~p~~~~~~p~~~~erVk~vHe~Gg~ 296 (349)
-...+.+.++++|...||+|+.| |.+|.. |. |....... ...+|-+.+.
T Consensus 30 ~~~~i~~~~~~~~~~~Gy~eI~t-P~le~~----el-~~~~~g~~--~~~~y~f~D~----------------------- 78 (464)
T 4g84_A 30 VREKVFDVIIRCFKRHGAEVIDT-PVFELK----ET-LMGKYGED--SKLIYDLKDQ----------------------- 78 (464)
T ss_dssp HHHHHHHHHHHHHHHTTCEECBC-CSEEEH----HH-HTTSCC------CCCBBCCC-----------------------
T ss_pred HHHHHHHHHHHHHHHCCCeEEEC-cccCcH----HH-hccccCcC--cceeEEEECC-----------------------
Confidence 36778889999999999999985 777643 22 22222111 1123434432
Q ss_pred CCCCcccccchhhhhccccCCCCchhHHHHHHHhhcCCCCCceEEecCceecC
Q 018851 297 GSRGYGYEWKREEANKNLLRTHTTAVSSRMLKALAEKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 297 gS~Gw~Y~W~~~~a~~~vLRTHTTavs~r~L~~l~~~~~~p~k~fsi~rVfR~ 349 (349)
..+.+.||.-.|+--+|++.. +...|.|+|++|.|||.
T Consensus 79 ------------~g~~l~LRPd~T~~~aR~~~~---~~~~p~k~~y~g~vfR~ 116 (464)
T 4g84_A 79 ------------GGELLSLRYDLTVPFARYLAM---NKLTNIKRYHIAKVYRR 116 (464)
T ss_dssp ------------SSCCEEECSCSHHHHHHHHHH---TTCSCEEEEEEEEEECC
T ss_pred ------------CCCEEEeCCcCcHHHHHHHHh---cCCCCceeEEEecceec
Confidence 123588999999999998764 33468999999999994
No 142
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=95.69 E-value=0.032 Score=48.40 Aligned_cols=66 Identities=9% Similarity=0.093 Sum_probs=53.5
Q ss_pred HHHHHHHHhhCC-CCCChHHHHHHhC-CCHHHHHHHHHHhccCCcEEEEee---------eeEEEEeChhHHHHhhc
Q 018851 3 EEAILGYLEKNE-QISDSGNFAAERG-FDHNDVVNVIKSLHGFRYIDAQDI---------KRETWVLTGEGKKYAAE 68 (349)
Q Consensus 3 e~~iL~~L~~~~-~~~~~~~la~~~g-~~~~~v~~~~~~L~~kgli~~~~~---------~~~~~~LTeEG~~~l~~ 68 (349)
...||..|.... ...+.++|+..++ ++...|.+-++.|.+.|+|..... ....|.||++|+..+..
T Consensus 31 R~~IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l~~ 107 (151)
T 3u1d_A 31 RLDVLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALLRA 107 (151)
T ss_dssp HHHHHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHHHH
Confidence 356888886653 2357889999888 999999999999999999986532 44599999999999854
No 143
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=95.67 E-value=0.016 Score=45.92 Aligned_cols=46 Identities=17% Similarity=0.264 Sum_probs=40.0
Q ss_pred HHHHHHHHHhh--CCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEE
Q 018851 2 AEEAILGYLEK--NEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDA 48 (349)
Q Consensus 2 ~e~~iL~~L~~--~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~ 48 (349)
-|..||..|.. ++. ....+||..++++...|.+.++.|+.+|||..
T Consensus 21 ~q~~Vl~~I~~~g~~g-i~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr 68 (91)
T 2dk5_A 21 QEKLVYQIIEDAGNKG-IWSRDVRYKSNLPLTEINKILKNLESKKLIKA 68 (91)
T ss_dssp SHHHHHHHHHHHCTTC-EEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCC-cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
Confidence 47789999986 334 56789999999999999999999999999984
No 144
>2xzm_7 Plectin/S10 domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_7
Probab=95.62 E-value=0.011 Score=51.44 Aligned_cols=47 Identities=17% Similarity=0.211 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHhccCCcEEEEee-eeEEEEeChhHHHHhhc--CChHH
Q 018851 27 GFDHNDVVNVIKSLHGFRYIDAQDI-KRETWVLTGEGKKYAAE--GSPEV 73 (349)
Q Consensus 27 g~~~~~v~~~~~~L~~kgli~~~~~-~~~~~~LTeEG~~~l~~--G~PE~ 73 (349)
+++--.|+.++.||.|+|+|+..-. ..-.|.||+||.+||.+ .+|+.
T Consensus 36 ~vpNL~ViKamqSLkSRGyVkEqFaWrhyYw~LTnEGIeYLR~yLhLP~e 85 (162)
T 2xzm_7 36 GVPNLHCYILVRSLKDRGFLEEIFNWGFTYYYLNKEGCEYLKTKLGISAD 85 (162)
T ss_dssp CCBHHHHHHHHHHHHHHTSEEEEEETTEEEEEECHHHHHHHHHHHCSSTT
T ss_pred CcCcHHHHHHHhcccccccccceeeeEEEEEEEchHHHHHHHHHhCCCcc
Confidence 3667789999999999999988777 66799999999999986 34444
No 145
>3u5c_K 40S ribosomal protein S10-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_K
Probab=95.58 E-value=0.0095 Score=48.64 Aligned_cols=43 Identities=26% Similarity=0.294 Sum_probs=37.5
Q ss_pred hCCCHHHHHHHHHHhccCCcEEEEee-eeEEEEeChhHHHHhhc
Q 018851 26 RGFDHNDVVNVIKSLHGFRYIDAQDI-KRETWVLTGEGKKYAAE 68 (349)
Q Consensus 26 ~g~~~~~v~~~~~~L~~kgli~~~~~-~~~~~~LTeEG~~~l~~ 68 (349)
++++-=.|+.++.||.|+|+|+.... ..-.|.||+||.+||++
T Consensus 35 l~vpNL~Vik~mqSLkSrGyVkeqFaWrh~Yw~LTnEGieyLR~ 78 (105)
T 3u5c_K 35 IDTKNLYVIKALQSLTSKGYVKTQFSWQYYYYTLTEEGVEYLRE 78 (105)
T ss_dssp SSSCHHHHHHHHHHHHHTSSEEEECTTTCCEEEECHHHHHHHHH
T ss_pred cCccchhHHHHHhcccccceeccEecceEEEEEEchhhHHHHHH
Confidence 34677789999999999999988776 66799999999999976
No 146
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=95.56 E-value=0.03 Score=50.51 Aligned_cols=69 Identities=13% Similarity=0.122 Sum_probs=53.2
Q ss_pred HHHHHHHHhhCCCC-----CChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee-eeEEEEeChhHHHHhhcCCh
Q 018851 3 EEAILGYLEKNEQI-----SDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI-KRETWVLTGEGKKYAAEGSP 71 (349)
Q Consensus 3 e~~iL~~L~~~~~~-----~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~-~~~~~~LTeEG~~~l~~G~P 71 (349)
+..+|..|...+.+ .+..++|+.++++..+|.+.++.|+..||+.-... -...+.||++|+.+++.-.+
T Consensus 9 ~l~~l~~l~~~~~l~~~~~~s~s~aA~~L~isq~avSr~I~~LE~~~L~~R~~~~R~~~v~LT~~G~~l~~~~~~ 83 (230)
T 3cta_A 9 YYRAIKKIKEAAEASNRAYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLYTEFA 83 (230)
T ss_dssp HHHHHHHHHHHTTTSSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEcCCeEEEEECHHHHHHHHHHHH
Confidence 45677777654421 24678999999999999999999999999976532 25688999999999865443
No 147
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=95.56 E-value=0.011 Score=59.86 Aligned_cols=87 Identities=17% Similarity=0.133 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHHhhCCceecCCCCceeeeehhhhccCCCCCCCCCCCCCeeeecCCCCCCCCCHHHHHHHHHHhhcCCC
Q 018851 217 PLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHESGGY 296 (349)
Q Consensus 217 Pl~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDaLf~PqdHPARd~~DTFyl~~p~~~~~~p~~~~erVk~vHe~Gg~ 296 (349)
-...+.+.++++|...||+|+.| |.+|.. |.+ ........ ...|-+.+.
T Consensus 83 ~~~~ie~~i~~~~~~~Gy~eI~t-P~lE~~----el~-~~~~ge~~--~~my~f~D~----------------------- 131 (517)
T 4g85_A 83 VREKVFDVIIRCFKRHGAEVIDT-PVFELK----ETL-MGKYGEDS--KLIYDLKDQ----------------------- 131 (517)
T ss_dssp HHHHHHHHHHHHHHHHTCEECBC-CSEEEH----HHH-HCC--------CSCBBCCT-----------------------
T ss_pred HHHHHHHHHHHHHHHCCCeEEEC-cccCcH----HHh-hcccCcCc--ceeEEEECC-----------------------
Confidence 35678889999999999999986 777643 221 11111111 113434332
Q ss_pred CCCCcccccchhhhhccccCCCCchhHHHHHHHhhcCCCCCceEEecCceecC
Q 018851 297 GSRGYGYEWKREEANKNLLRTHTTAVSSRMLKALAEKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 297 gS~Gw~Y~W~~~~a~~~vLRTHTTavs~r~L~~l~~~~~~p~k~fsi~rVfR~ 349 (349)
..+.+.||.-.|+--+|++.. +...|.|+|++|.|||.
T Consensus 132 ------------~g~~l~LRPd~T~~~aR~~~~---~~~~p~k~yyig~vfR~ 169 (517)
T 4g85_A 132 ------------GGELLSLRYDLTVPFARYLAM---NKLTNIKRYHIAKVYRR 169 (517)
T ss_dssp ------------TSCCEEECSCSHHHHHHHHHH---TTCSCEEEEEEEEEECC
T ss_pred ------------CCCEEEeCCcCcHHHHHHHHh---CCCCCceeEEEeceEec
Confidence 123588999999999998763 33468999999999994
No 148
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=95.39 E-value=0.018 Score=44.40 Aligned_cols=47 Identities=13% Similarity=0.213 Sum_probs=41.5
Q ss_pred HHHHHHHHhhC-----CCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEE
Q 018851 3 EEAILGYLEKN-----EQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQ 49 (349)
Q Consensus 3 e~~iL~~L~~~-----~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~ 49 (349)
.++||..|... +...+..++|+.+|++...|.+.+..|+.+|+|.-.
T Consensus 6 ~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEec
Confidence 56799999876 455788999999999999999999999999999775
No 149
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=95.38 E-value=0.042 Score=42.42 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=46.9
Q ss_pred HHHHHHHhh-CCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeee-------eEEEEeChhHHHHh
Q 018851 4 EAILGYLEK-NEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIK-------RETWVLTGEGKKYA 66 (349)
Q Consensus 4 ~~iL~~L~~-~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~-------~~~~~LTeEG~~~l 66 (349)
..+|..|.. .+. .+..++|+.+|++...|.+.+..|+.+|+|...... ...|.+|++..+.+
T Consensus 24 ~~~l~~l~~~~~~-~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~~~~~gr~~~~~~l~~~~~~~~ 93 (109)
T 2d1h_A 24 VAVLLKMVEIEKP-ITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGKKIGRPKYYYSISSNILEKI 93 (109)
T ss_dssp HHHHHHHHHHCSC-EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-------CCEEEEECTTHHHHH
T ss_pred HHHHHHHHHcCCC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccccCCCCCCCeeeecCHHHHHHH
Confidence 455555544 444 578899999999999999999999999999886532 34688888555444
No 150
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=95.35 E-value=0.054 Score=44.47 Aligned_cols=60 Identities=17% Similarity=0.278 Sum_probs=49.5
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee-eeEEEEeChhHHH
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI-KRETWVLTGEGKK 64 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~-~~~~~~LTeEG~~ 64 (349)
..+||..|.. +. .+..++|+.+|++...|.+.++.|+..|+|..+.. ....|.||+++-.
T Consensus 48 rl~IL~~L~~-~~-~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~gr~~~y~l~~~~l~ 108 (122)
T 1r1t_A 48 RLRLLSLLAR-SE-LCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQDHHIV 108 (122)
T ss_dssp HHHHHHHHTT-CC-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHHHH
T ss_pred HHHHHHHHHc-CC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHH
Confidence 3578888874 43 57789999999999999999999999999988664 3458999998743
No 151
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=95.35 E-value=0.0069 Score=52.21 Aligned_cols=63 Identities=13% Similarity=0.116 Sum_probs=48.3
Q ss_pred HHHHHHhhCCCCCChHHHHHHh-------CCCHHHHHHHHHHhccCCcEEEEee-------eeEEEEeChhHHHHhhcC
Q 018851 5 AILGYLEKNEQISDSGNFAAER-------GFDHNDVVNVIKSLHGFRYIDAQDI-------KRETWVLTGEGKKYAAEG 69 (349)
Q Consensus 5 ~iL~~L~~~~~~~~~~~la~~~-------g~~~~~v~~~~~~L~~kgli~~~~~-------~~~~~~LTeEG~~~l~~G 69 (349)
-||.+|...+ ..-+++.+.+ ++++..|...++.|+.+|+|+.... ..+.|.||++|++++.+-
T Consensus 48 ~IL~lL~~~p--~~GYeI~k~l~~~~~~~~is~gtLYp~L~rLE~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~~~ 124 (148)
T 2zfw_A 48 YVLAVLRHED--SYGTELIQHLETHWPNYRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDL 124 (148)
T ss_dssp HHHHHHTTCC--EEHHHHHHHHHHHCTTEECCSHHHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEEESSSSCSTTHHH
T ss_pred HHHHHHHhCC--CcHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHCCCEEEEeeccCCCCCCcEEEEECHHHHHHHHHH
Confidence 4788886533 3445665544 5899999999999999999998642 456899999999988663
No 152
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=95.35 E-value=0.045 Score=50.35 Aligned_cols=112 Identities=11% Similarity=0.137 Sum_probs=80.5
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEE-Eee-e-----eEEEEeChhHHH-----------
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDA-QDI-K-----RETWVLTGEGKK----------- 64 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~-~~~-~-----~~~~~LTeEG~~----------- 64 (349)
..+||..|.. +. .+..+||+.+|++...|...++.|+..|+|.. ... . ...|.||++|..
T Consensus 14 R~~IL~~L~~-g~-~s~~ELa~~lglS~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~~~~~~~~l~~~~~w~ 91 (232)
T 2qlz_A 14 RRDLLSHLTC-ME-CYFSLLSSKVSVSSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISIAKSYVFTLTPEMFWY 91 (232)
T ss_dssp HHHHHHHHTT-TT-TCSSSSCTTCCCCHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECCCEEEEEEEETTEEEE
T ss_pred HHHHHHHHHh-CC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEccchhhHHHHHHHHHHH
Confidence 3568888874 44 56678999999999999999999999999998 332 3 568998886521
Q ss_pred -----------------------------------------------------------------H---hhcCChHHHHH
Q 018851 65 -----------------------------------------------------------------Y---AAEGSPEVQLF 76 (349)
Q Consensus 65 -----------------------------------------------------------------~---l~~G~PE~rl~ 76 (349)
+ +..|..+..|+
T Consensus 92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~le~ig~~~~~~~l~ 171 (232)
T 2qlz_A 92 KGLDLGDAELRDFEISLSGLDTEPSTLKEMITDFIKANKELEKVLEAFKTIESYRSSLMRKIKEAYLKEIGDMTQLAILH 171 (232)
T ss_dssp EEEECCSCCCCCEEEECTTSCSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred HHhhccccccchhhhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHH
Confidence 0 11144556666
Q ss_pred HhcCcCCCCCHHHHHhhcC--chhhhhHHHHHhhCCcEe-eCce
Q 018851 77 LAVPAEGSISKDELQKKLD--PAVFKIGCSQAGKNKWVE-MGKQ 117 (349)
Q Consensus 77 ~~l~~~g~~~~~el~~~~~--~~~~~ig~g~~~k~~wi~-i~~~ 117 (349)
..|. +|+.+.++|...+| +++..-.+..+.+.|.|+ +.+|
T Consensus 172 ~~l~-~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~~~~~~ 214 (232)
T 2qlz_A 172 YLLL-NGRATVEELSDRLNLKEREVREKISEMARFVPVKIINDN 214 (232)
T ss_dssp HHHH-SSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEEEETTT
T ss_pred HHHh-cCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeEEecCC
Confidence 5554 35578888888754 456667889999999994 4444
No 153
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=95.33 E-value=0.019 Score=56.79 Aligned_cols=89 Identities=12% Similarity=0.150 Sum_probs=61.0
Q ss_pred ChHHHHHHHHHHHHhhCCceecCCCCceeeeehhhhccCCC-CCCCCCCC-CCeeeecCCCCCCCCCHHHHHHHHHHhhc
Q 018851 216 HPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQP-QQHPARDS-HDTFFLEEPSTTRELPEDYVERVKRVHES 293 (349)
Q Consensus 216 HPl~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDaLf~P-qdHPARd~-~DTFyl~~p~~~~~~p~~~~erVk~vHe~ 293 (349)
.-...+.+.++++|...||+|+.+ |.+|.. |. |.- ..| .. .+.|-+.+.
T Consensus 21 ~~~~~i~~~i~~~~~~~G~~ei~t-P~le~~----el-~~~~~G~---~~~~em~~~~D~-------------------- 71 (434)
T 1wu7_A 21 DVEKFIFKTAEEAAEAFGFRRIDF-PSLEYL----DL-YRIKSGE---ELLQQTYSFVDK-------------------- 71 (434)
T ss_dssp HHHHHHHHHHHHHHHHTTCEECBC-CSEEET----HH-HHTTSCT---TGGGGSCEEECT--------------------
T ss_pred HHHHHHHHHHHHHHHHcCCEEeec-cccccH----HH-hhhccCC---ccccceEEEECC--------------------
Confidence 346788889999999999999985 777653 22 211 133 22 234555432
Q ss_pred CCCCCCCcccccchhhhhccccCCCCchhHHHHHHHhhcCCCCCceEEecCceecC
Q 018851 294 GGYGSRGYGYEWKREEANKNLLRTHTTAVSSRMLKALAEKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 294 Gg~gS~Gw~Y~W~~~~a~~~vLRTHTTavs~r~L~~l~~~~~~p~k~fsi~rVfR~ 349 (349)
..+...||.-.|+.-+|+..+. ..-..|.|+|.++.|||.
T Consensus 72 ---------------~g~~l~LrPd~t~~~aR~~~~~-~~~~lP~rl~~~g~vfR~ 111 (434)
T 1wu7_A 72 ---------------GGREVTLIPEATPSTVRMVTSR-KDLQRPLRWYSFPKVWRY 111 (434)
T ss_dssp ---------------TSCEEEECSCSHHHHHHHHTTC-TTCCSSEEEEECCEEECC
T ss_pred ---------------CCCEEEeCCCChHHHHHHHHhc-CCCCCCeEEEEEcCeecC
Confidence 1246899999999999988643 111369999999999994
No 154
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=95.33 E-value=0.021 Score=44.07 Aligned_cols=45 Identities=4% Similarity=0.023 Sum_probs=40.7
Q ss_pred HHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEE
Q 018851 4 EAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQ 49 (349)
Q Consensus 4 ~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~ 49 (349)
.+||..|...+. .+..+||+.++++...|.+.+..|+.+|+|.-.
T Consensus 5 ~~Il~~L~~~g~-vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 5 IQVRDLLALRGR-MEAAQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHHSCS-BCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHcCC-CcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 579999998887 788999999999999999999999999998543
No 155
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=95.22 E-value=0.018 Score=56.52 Aligned_cols=92 Identities=16% Similarity=0.222 Sum_probs=61.1
Q ss_pred CChHHHHHHHHHHHHhhCCceecCCCCceeeeehhhhccCCCCCCCCCCC----CCeeeecCCCCCCCCCHHHHHHHHHH
Q 018851 215 LHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDS----HDTFFLEEPSTTRELPEDYVERVKRV 290 (349)
Q Consensus 215 ~HPl~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDaLf~PqdHPARd~----~DTFyl~~p~~~~~~p~~~~erVk~v 290 (349)
......+.+.++++|...||+|+.+ |.+|.. | ||... -.++. .+.|-+.+.
T Consensus 18 ~~~~~~i~~~i~~~~~~~G~~ei~t-P~le~~----e-l~~~~--~G~~~d~~~~em~~~~D~----------------- 72 (423)
T 1htt_A 18 TAIWQRIEGTLKNVLGSYGYSEIRL-PIVEQT----P-LFKRA--IGEVTDVVEKEMYTFEDR----------------- 72 (423)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEECBC-CSEEEH----H-HHHHH--HCSSSHHHHHTCEEEECT-----------------
T ss_pred HHHHHHHHHHHHHHHHHcCCEEecc-cccCHH----H-HHhhc--cCCchhhhhhheEEEEcC-----------------
Confidence 3456788899999999999999985 777653 1 11110 00110 123545432
Q ss_pred hhcCCCCCCCcccccchhhhhccccCCCCchhHHHHHHHhhcCCCCCceEEecCceecC
Q 018851 291 HESGGYGSRGYGYEWKREEANKNLLRTHTTAVSSRMLKALAEKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 291 He~Gg~gS~Gw~Y~W~~~~a~~~vLRTHTTavs~r~L~~l~~~~~~p~k~fsi~rVfR~ 349 (349)
..+...||.-.|+.-+|+..+.......|.|+|.++.|||.
T Consensus 73 ------------------~g~~l~Lrpd~t~~~aR~~~~~~~~~~~P~rl~~~g~vfR~ 113 (423)
T 1htt_A 73 ------------------NGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRH 113 (423)
T ss_dssp ------------------TSCEEEECSCSHHHHHHHHHHHTCSTTCCEEEEEEEEEECC
T ss_pred ------------------CCCEEEeCCCchHHHHHHHHhcccccCCCeEEEEEcCEecC
Confidence 12478999999999999886432222369999999999994
No 156
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=95.10 E-value=0.019 Score=46.80 Aligned_cols=65 Identities=12% Similarity=0.147 Sum_probs=47.5
Q ss_pred HHHHHHHHh-hCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEe--eeeEEEEeChhHHHHhhc
Q 018851 3 EEAILGYLE-KNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQD--IKRETWVLTGEGKKYAAE 68 (349)
Q Consensus 3 e~~iL~~L~-~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~--~~~~~~~LTeEG~~~l~~ 68 (349)
+..+|..|. ..+. .+..++|+.+|++.+.|.+.+..|+.+|+|.... .....+.++..|...+..
T Consensus 28 ~~~il~~L~~~~~~-~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~~~d~r~~~~~~~~~~~~~~ 95 (152)
T 1ku9_A 28 VGAVYAILYLSDKP-LTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGERKNYYEAVDGFSSIKD 95 (152)
T ss_dssp HHHHHHHHHHCSSC-EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCSSCEEEECCHHHHHHH
T ss_pred HHHHHHHHHHcCCC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCceEEEeecchHHHHHH
Confidence 567787775 3444 6778999999999999999999999999998864 223344444455544433
No 157
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=95.10 E-value=0.023 Score=44.85 Aligned_cols=46 Identities=4% Similarity=0.045 Sum_probs=41.4
Q ss_pred HHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEe
Q 018851 4 EAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQD 50 (349)
Q Consensus 4 ~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~ 50 (349)
.+||..|...+. .+..+||+.++++...|.+.+..|+.+|+|.-..
T Consensus 5 ~~Il~~L~~~g~-vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 5 MEVRDMLALQGR-MEAKQLSARLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHHSCS-EEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHcCC-CcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 579999998887 7789999999999999999999999999987654
No 158
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=95.06 E-value=0.047 Score=53.48 Aligned_cols=95 Identities=15% Similarity=0.207 Sum_probs=61.9
Q ss_pred CCChHHHHHHHHHHHHhhCCceecCCCCceeeeehhhhccCCCC-CCCCC-CCCCeeeecCCCCCCCCCHHHHHHHHHHh
Q 018851 214 HLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQ-QHPAR-DSHDTFFLEEPSTTRELPEDYVERVKRVH 291 (349)
Q Consensus 214 ~~HPl~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDaLf~Pq-dHPAR-d~~DTFyl~~p~~~~~~p~~~~erVk~vH 291 (349)
-......+.+.++++|...||+|+.+ |.+|.. | ||.-. .|-.= --.+.|-+.+.
T Consensus 16 ~~~~~~~i~~~i~~~~~~~G~~ei~t-P~le~~----e-l~~~~~G~~~d~~~~em~~~~D~------------------ 71 (421)
T 1h4v_B 16 ELRMHQRIVATARKVLEAAGALELVT-PIFEET----Q-VFEKGVGAATDIVRKEMFTFQDR------------------ 71 (421)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEecc-cccccH----H-HhhhccCCcccccccceEEEECC------------------
Confidence 34557889999999999999999975 666543 2 22211 11000 00134545432
Q ss_pred hcCCCCCCCcccccchhhhhccccCCCCchhHHHHHHHhh-cCCCCCceEEecCceecC
Q 018851 292 ESGGYGSRGYGYEWKREEANKNLLRTHTTAVSSRMLKALA-EKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 292 e~Gg~gS~Gw~Y~W~~~~a~~~vLRTHTTavs~r~L~~l~-~~~~~p~k~fsi~rVfR~ 349 (349)
..+...||.-.|+.-+|+..+.. .....|.|+|.++.|||.
T Consensus 72 -----------------~g~~l~Lrpd~t~~~ar~~~~~~~~~~~lP~rl~~~g~vfR~ 113 (421)
T 1h4v_B 72 -----------------GGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRA 113 (421)
T ss_pred -----------------CCCEEeeCCcchHHHHHHHHhccccccCCCeEEEEecCeecC
Confidence 12478999999999999886421 112369999999999994
No 159
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=94.88 E-value=0.048 Score=44.74 Aligned_cols=50 Identities=14% Similarity=0.193 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhCCCC-CChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee
Q 018851 2 AEEAILGYLEKNEQI-SDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI 51 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~-~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~ 51 (349)
.+..||..|...+.. .+..++|+.+|++...|.+.+..|+.+|+|.....
T Consensus 27 ~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~~ 77 (123)
T 3r0a_A 27 ADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQQ 77 (123)
T ss_dssp HHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeCC
Confidence 467899999877654 57899999999999999999999999999987653
No 160
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=94.86 E-value=0.077 Score=50.80 Aligned_cols=72 Identities=13% Similarity=0.109 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeee-eEEEEeChhHHHHhhcCChHH
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIK-RETWVLTGEGKKYAAEGSPEV 73 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~-~~~~~LTeEG~~~l~~G~PE~ 73 (349)
+|..|...|.+.+...+.++||+.+|+++..+.+.+..|.+.|++..+... ...|.+|+.+..++..++|..
T Consensus 29 ~eLglfd~L~~~~~p~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~s~~~l~~~~~~~ 101 (353)
T 4a6d_A 29 CELGVFDLLAEAPGPLDVAAVAAGVRASAHGTELLLDICVSLKLLKVETRGGKAFYRNTELSSDYLTTVSPTS 101 (353)
T ss_dssp HHHTHHHHHHHSSSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHSTTSTTC
T ss_pred HHcCHHHHHhcCCCCCCHHHHHHhhCcCHHHHHHHHHHHHHCCCEEEeccCccceeeCCHHHHHHhhcCCchH
Confidence 355677888776555788999999999999999999999999999876554 558999999999999888853
No 161
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=94.77 E-value=0.043 Score=45.62 Aligned_cols=61 Identities=15% Similarity=0.122 Sum_probs=47.6
Q ss_pred HHHHHHHHHhh-CCCCCChHHHHHHhC----CCHHHHHHHHHHhccCCcEEEEeeee-EEE--EeChhHH
Q 018851 2 AEEAILGYLEK-NEQISDSGNFAAERG----FDHNDVVNVIKSLHGFRYIDAQDIKR-ETW--VLTGEGK 63 (349)
Q Consensus 2 ~e~~iL~~L~~-~~~~~~~~~la~~~g----~~~~~v~~~~~~L~~kgli~~~~~~~-~~~--~LTeEG~ 63 (349)
.|..||..|.. .+. .+..++++.++ ++...|.+.+..|+.+|+|..+.... ..| .||++|.
T Consensus 10 ~e~~vL~~L~~~~~~-~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~~~r~~~~~~~lt~~~~ 78 (138)
T 2g9w_A 10 LERAVMDHLWSRTEP-QTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIRDDRAHRYAPVHGRDEL 78 (138)
T ss_dssp HHHHHHHHHHTCSSC-EEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC---CCEEEESSCHHHH
T ss_pred HHHHHHHHHHhcCCC-CCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEecCCeEEEEeCCCHHHH
Confidence 47889999987 354 67889999987 89999999999999999998765422 244 4788874
No 162
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=94.65 E-value=0.045 Score=42.11 Aligned_cols=44 Identities=5% Similarity=0.078 Sum_probs=39.2
Q ss_pred CChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeCh
Q 018851 17 SDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTG 60 (349)
Q Consensus 17 ~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTe 60 (349)
....++|.++|++.+.|.+++..|+.+|+|.......-.|.++-
T Consensus 30 ~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~~~~PP~W~~~~ 73 (75)
T 1sfu_A 30 TTAISLSNRLKINKKKINQQLYKLQKEDTVKMVPSNPPKWFKNY 73 (75)
T ss_dssp ECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCSSCEEEECT
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecCCCCCCCccCCC
Confidence 45688999999999999999999999999999888777887764
No 163
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=94.64 E-value=0.095 Score=41.95 Aligned_cols=56 Identities=14% Similarity=0.197 Sum_probs=45.3
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeee-eEEEEeCh
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIK-RETWVLTG 60 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~-~~~~~LTe 60 (349)
+..||..|.. +. .+..++|+.+|++...|.+.++.|+..|+|..+... ...|.+|.
T Consensus 34 ~~~il~~L~~-~~-~s~~ela~~l~is~stvsr~l~~Le~~Glv~~~~~~r~~~~~~~~ 90 (119)
T 2lkp_A 34 RLMILTQLRN-GP-LPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGDRAGRSIVYSLYD 90 (119)
T ss_dssp HHHHHHHHHH-CC-CCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEEEETTEEEEEESC
T ss_pred HHHHHHHHHH-CC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEch
Confidence 4678888876 43 578899999999999999999999999999876543 34667773
No 164
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=94.60 E-value=0.006 Score=58.79 Aligned_cols=62 Identities=13% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHHHhhc
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAAE 68 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~l~~ 68 (349)
+..||..|...+. .+..+||+.+|++...|.+.+..|+.+|+|.... .-+.||++|++.+++
T Consensus 22 ~~~iL~~l~~~~~-~t~~eLa~~l~vs~~Tv~r~l~~Le~~Glv~~~~---~gi~LT~~G~~~~~~ 83 (345)
T 2o0m_A 22 RFQILRNIYWMQP-IGRRSLSETMGITERVLRTETDVLKQLNLIEPSK---SGMTLTERGLEVYQG 83 (345)
T ss_dssp ------------------------------------------------------------------
T ss_pred HHHHHHHHHHcCC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe---cceEEcHHHHHHHHH
Confidence 4568888876665 5678999999999999999999999999997543 358999999987644
No 165
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=94.55 E-value=0.017 Score=58.06 Aligned_cols=93 Identities=14% Similarity=0.157 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhhCCceecCCCCceeeeehhhhccCCCCCC-CCCCCCCeeeecCCCCCCCCCHHHHHHHHHHhhcCCC
Q 018851 218 LLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQH-PARDSHDTFFLEEPSTTRELPEDYVERVKRVHESGGY 296 (349)
Q Consensus 218 l~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDaLf~PqdH-PARd~~DTFyl~~p~~~~~~p~~~~erVk~vHe~Gg~ 296 (349)
...+.+.++++|...||+++.| |.+|. .|.+-.--.| ..--..++|-+.+..
T Consensus 49 ~~~l~~~i~~~~~~~Gy~eI~t-P~le~----~el~~~~~G~~~d~~~~~my~~~D~~---------------------- 101 (467)
T 4e51_A 49 WEFFEATVKSLLRAYGYQNIRT-PIVEH----TPLFTRGIGEVTDIVEKEMYSFVDAL---------------------- 101 (467)
T ss_dssp HHHHHHHHHHHHHHTTCEECBC-CSEEE----HHHHHHHTCTTSHHHHHTCCEEECTT----------------------
T ss_pred HHHHHHHHHHHHHHcCCEEEEC-Ccccc----HHHhhhccCCcccccccceEEEecCC----------------------
Confidence 4567788999999999999985 66653 2222111122 100012345443311
Q ss_pred CCCCcccccchhhhhccccCCCCchhHHHHHHHhhcCCCCCceEEecCceecC
Q 018851 297 GSRGYGYEWKREEANKNLLRTHTTAVSSRMLKALAEKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 297 gS~Gw~Y~W~~~~a~~~vLRTHTTavs~r~L~~l~~~~~~p~k~fsi~rVfR~ 349 (349)
..+.+.||.-.|+.-+|+..........|.|+|.++.|||.
T Consensus 102 ------------~g~~l~LRPd~t~~~ar~~~~~~~~~~lP~r~~~~g~vfR~ 142 (467)
T 4e51_A 102 ------------NGENLTLRPENTAAVVRAAIEHNMLYDGPKRLWYIGPMFRH 142 (467)
T ss_dssp ------------TCCEEEECSCSHHHHHHHHHHTTTTTTSCEEEEEEEEEECC
T ss_pred ------------CCCEEEeCcccHHHHHHHHHHcccccCCCEEEEEEccEEcc
Confidence 02368999999999999886432111359999999999994
No 166
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=94.40 E-value=0.071 Score=40.13 Aligned_cols=56 Identities=9% Similarity=0.110 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhC----CCHHHHHHHHHHhccCCcEEEEee-eeEEEEe
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERG----FDHNDVVNVIKSLHGFRYIDAQDI-KRETWVL 58 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g----~~~~~v~~~~~~L~~kgli~~~~~-~~~~~~L 58 (349)
.|..||..|...+. .+..++++.++ ++...|.+.+..|+.+|+|..... ....|.+
T Consensus 10 ~e~~vL~~L~~~~~-~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~~gr~~~y~~ 70 (82)
T 1p6r_A 10 AELEVMKVIWKHSS-INTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKEGRVFVYTP 70 (82)
T ss_dssp HHHHHHHHHHTSSS-EEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHcCCC-CCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEecCCEEEEEe
Confidence 47789999987655 67889998875 789999999999999999987654 2334544
No 167
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=94.35 E-value=0.095 Score=41.15 Aligned_cols=62 Identities=8% Similarity=0.030 Sum_probs=49.3
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee-eeEEEEeChhHHHHh
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI-KRETWVLTGEGKKYA 66 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~-~~~~~~LTeEG~~~l 66 (349)
..+||..|...+. .+..++|+.+|++...|..-++.|+.. +|..+.. ....|.||++|..-+
T Consensus 29 Rl~IL~~l~~~~~-~~~~ela~~l~is~stvs~hL~~L~~~-lv~~~~~gr~~~y~l~~~~~~~~ 91 (99)
T 2zkz_A 29 RLKIVNELYKHKA-LNVTQIIQILKLPQSTVSQHLCKMRGK-VLKRNRQGLEIYYSINNPKVEGI 91 (99)
T ss_dssp HHHHHHHHHHHSC-EEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEEEETTEEEEECCCHHHHHH
T ss_pred HHHHHHHHHHCCC-cCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhheEeCcEEEEEEChHHHHHH
Confidence 3567855554554 567899999999999999999999999 9987655 445899999987544
No 168
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=94.29 E-value=0.091 Score=39.55 Aligned_cols=56 Identities=11% Similarity=0.189 Sum_probs=44.7
Q ss_pred HHHHHHHHhhCC-CCCChHHHHHHh-----CCCHHHHHHHHHHhccCCcEEEEee--eeEEEEe
Q 018851 3 EEAILGYLEKNE-QISDSGNFAAER-----GFDHNDVVNVIKSLHGFRYIDAQDI--KRETWVL 58 (349)
Q Consensus 3 e~~iL~~L~~~~-~~~~~~~la~~~-----g~~~~~v~~~~~~L~~kgli~~~~~--~~~~~~L 58 (349)
...||..|...+ ...+.+++++.+ +++...|.+.+..|+..|+|..... ....|.+
T Consensus 19 r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y~~ 82 (83)
T 2fu4_A 19 RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVFEL 82 (83)
T ss_dssp HHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEEEE
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEeec
Confidence 457999997653 347889999999 9999999999999999999986543 2345554
No 169
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=94.07 E-value=0.11 Score=45.14 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=50.2
Q ss_pred HHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee-eeEEEEeChhHHHHhh
Q 018851 4 EAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI-KRETWVLTGEGKKYAA 67 (349)
Q Consensus 4 ~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~-~~~~~~LTeEG~~~l~ 67 (349)
.+||..|. .|. .++..+|+.+|++|+++.-+++.|+-.|+|..-.+ ....|+|.+. +|+.
T Consensus 14 ~~ILE~Lk-~G~-~~t~~Iak~LGlShg~aq~~Ly~LeREG~V~~Vk~GK~ayw~L~~s--~y~~ 74 (165)
T 2vxz_A 14 RDILALLA-DGC-KTTSLIQQRLGLSHGRAKALIYVLEKEGRVTRVAFGNVALVCLSMD--QYRQ 74 (165)
T ss_dssp HHHHHHHT-TCC-EEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEEETTEEEEESCHH--HHHH
T ss_pred HHHHHHHH-hCC-ccHHHHHHHhCCcHHHHHHHHHHHHhcCceEEEEEccEEEEEecHH--HHHH
Confidence 57999998 554 78899999999999999999999999999976555 5668899765 6664
No 170
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=93.99 E-value=0.086 Score=43.97 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEE
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDA 48 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~ 48 (349)
.+.+||..|..++. .+..++|+.+|++...|.+.++.|+++|+|.-
T Consensus 6 ~d~~il~~L~~~~~-~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 51 (144)
T 2cfx_A 6 IDLNIIEELKKDSR-LSMRELGRKIKLSPPSVTERVRQLESFGIIKQ 51 (144)
T ss_dssp HHHHHHHHHHHCSC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 46789999988776 67889999999999999999999999999974
No 171
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=93.69 E-value=0.1 Score=46.75 Aligned_cols=61 Identities=16% Similarity=0.177 Sum_probs=49.7
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee------eeEEEEeChhHHHH
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI------KRETWVLTGEGKKY 65 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~------~~~~~~LTeEG~~~ 65 (349)
...||..|.. +. .+..+||+.+|+++..|...++.|+..|+|..... ....|.||++|...
T Consensus 17 rl~IL~~L~~-~~-~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~~~~ 83 (202)
T 2p4w_A 17 RRRILFLLTK-RP-YFVSELSRELGVGQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLRLE 83 (202)
T ss_dssp HHHHHHHHHH-SC-EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEEEE
T ss_pred HHHHHHHHHh-CC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHHHHH
Confidence 4578888864 33 57789999999999999999999999999988654 45678888887653
No 172
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=93.66 E-value=0.071 Score=44.99 Aligned_cols=47 Identities=6% Similarity=0.096 Sum_probs=39.7
Q ss_pred CChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeee------EEEEeChhHH
Q 018851 17 SDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKR------ETWVLTGEGK 63 (349)
Q Consensus 17 ~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~------~~~~LTeEG~ 63 (349)
.+.++||+.+|++..+|.+.+..|..||+|.++.... ..|.||+-=+
T Consensus 52 ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL~pL~e 104 (135)
T 2v79_A 52 PTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQPLWG 104 (135)
T ss_dssp CCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEECHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEeeHHHHHH
Confidence 5789999999999999999999999999999965532 4788877443
No 173
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=93.65 E-value=0.081 Score=41.94 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=39.0
Q ss_pred HHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEE
Q 018851 4 EAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQ 49 (349)
Q Consensus 4 ~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~ 49 (349)
.+||..|...+...+..+||+.+|++...|..++..|++.|+|...
T Consensus 21 l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 21 IDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp HHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 4688877554422678899999999999999999999999999887
No 174
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=93.65 E-value=0.11 Score=43.59 Aligned_cols=46 Identities=11% Similarity=0.234 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEE
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDA 48 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~ 48 (349)
.+.+||..|..++. .+..++|+.+|++...|.+.++.|++.|+|.-
T Consensus 8 ~~~~iL~~L~~~~~-~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 53 (150)
T 2w25_A 8 IDRILVRELAADGR-ATLSELATRAGLSVSAVQSRVRRLESRGVVQG 53 (150)
T ss_dssp HHHHHHHHHHHCTT-CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 46789999987776 67889999999999999999999999999964
No 175
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=93.62 E-value=0.084 Score=44.17 Aligned_cols=45 Identities=13% Similarity=0.166 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEE
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYID 47 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~ 47 (349)
.+.+||..|..++. .+..++|+.+|++...|.+.++.|++.|+|.
T Consensus 10 ~d~~il~~L~~~~~-~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 10 VDMQLVKILSENSR-LTYRELADILNTTRQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp HHHHHHHHHHHCTT-CCHHHHHHHTTSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 46789999988776 6788999999999999999999999999997
No 176
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=93.38 E-value=0.096 Score=43.93 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEE
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDA 48 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~ 48 (349)
.+.+||..|..++. .+..++|+.+|++...|.+.++.|++.|+|.-
T Consensus 9 ~d~~il~~L~~~~~-~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 9 LDRGILEALMGNAR-TAYAELAKQFGVSPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp HHHHHHHHHHHCTT-SCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHCcCHHHHHHHHHHHHHcCCcce
Confidence 46789999988776 67889999999999999999999999999974
No 177
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=93.36 E-value=0.12 Score=43.83 Aligned_cols=46 Identities=13% Similarity=0.197 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEE
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDA 48 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~ 48 (349)
.+.+||..|..++. .+..++|+.+|++...|.+.++.|+..|+|.-
T Consensus 11 ~~~~il~~L~~~~~-~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 56 (162)
T 2p5v_A 11 TDIKILQVLQENGR-LTNVELSERVALSPSPCLRRLKQLEDAGIVRQ 56 (162)
T ss_dssp HHHHHHHHHHHCTT-CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEee
Confidence 46789999988776 67889999999999999999999999999974
No 178
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=93.28 E-value=0.062 Score=57.73 Aligned_cols=90 Identities=16% Similarity=0.206 Sum_probs=65.2
Q ss_pred CChHHH-HHHHHHHHHhhCCceecCCCCceeeeehhhhccCCCCCCCCCCCCCeeeecCCCCCCCCCHHHHHHHHHHhhc
Q 018851 215 LHPLLK-VRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHES 293 (349)
Q Consensus 215 ~HPl~~-~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDaLf~PqdHPARd~~DTFyl~~p~~~~~~p~~~~erVk~vHe~ 293 (349)
.+|..+ +.+.+|+.|..+||.|+-+.+++..+ + ++.+. |. .+..-|.+|-..
T Consensus 487 ~~~~~~~~~~~~r~~l~~~G~~Evitysf~~~~-~-~~~~~-~~-------~~~v~l~NPis~----------------- 539 (795)
T 3pco_B 487 THREADLSLKRVKTLLNDKGYQEVITYSFVDPK-V-QQMIH-PG-------VEALLLPSPISV----------------- 539 (795)
T ss_dssp CCCTTBCCHHHHHHHHHHTTCEECCCCSEECHH-H-HHHHS-SS-------CCCCBCSSCSCS-----------------
T ss_pred CCCHHHHHHHHHHHHHHHCCCeeeeccCcCCHH-H-HHhhC-CC-------CCeEEEcCCCch-----------------
Confidence 344444 78999999999999999877777544 2 23332 32 245667776432
Q ss_pred CCCCCCCcccccchhhhhccccCCCCchhHHHHHHHhhcCCCCCceEEecCceec
Q 018851 294 GGYGSRGYGYEWKREEANKNLLRTHTTAVSSRMLKALAEKPFAPKKVFLHRSCFQ 348 (349)
Q Consensus 294 Gg~gS~Gw~Y~W~~~~a~~~vLRTHTTavs~r~L~~l~~~~~~p~k~fsi~rVfR 348 (349)
...+|||..-+.-...+.....+..++.++|-+|+||+
T Consensus 540 -----------------e~svmRtsLlpgLL~~~~~N~~r~~~~v~lFEiG~Vf~ 577 (795)
T 3pco_B 540 -----------------EMSAMRLSLWTGLLATVVYNQNRQQNRVRIFESGLRFV 577 (795)
T ss_dssp -----------------TTCEECSSSHHHHHHHHHHHHTSSCCCCEEEEEEEEEE
T ss_pred -----------------hHHHHHHHHHHHHHHHHHHHHhCCCCCccEEEeeeEEe
Confidence 25899999999888888776555567899999999996
No 179
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=93.17 E-value=0.092 Score=43.46 Aligned_cols=51 Identities=10% Similarity=0.151 Sum_probs=37.8
Q ss_pred HHHHHHHHhh---CC-CCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeee
Q 018851 3 EEAILGYLEK---NE-QISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKR 53 (349)
Q Consensus 3 e~~iL~~L~~---~~-~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~ 53 (349)
|..||..|.. .+ ...+..+||+.+|++..+|.+++..|+.+|+|..+....
T Consensus 34 e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~~~ 88 (128)
T 2vn2_A 34 ELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEHTD 88 (128)
T ss_dssp HHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC---
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEEC
Confidence 4445555543 12 225789999999999999999999999999999976633
No 180
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=93.17 E-value=0.091 Score=44.91 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEE
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYID 47 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~ 47 (349)
+..+||..|..++. .+..+||+.+|++...|.+-++.|++.|+|.
T Consensus 4 ~d~~il~~L~~~~~-~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 4 LDRKILRILQEDST-LAVADLAKKVGLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHTTCSC-SCHHHHHHHHTCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCee
Confidence 46789999998776 6788999999999999999999999999987
No 181
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=93.16 E-value=0.13 Score=44.50 Aligned_cols=46 Identities=17% Similarity=0.186 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEE
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDA 48 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~ 48 (349)
++.+||..|..++. .+..++|+.+|++...|.+.++.|++.|+|.-
T Consensus 18 ~d~~IL~~L~~~~~-~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~ 63 (171)
T 2ia0_A 18 LDRNILRLLKKDAR-LTISELSEQLKKPESTIHFRIKKLQERGVIER 63 (171)
T ss_dssp HHHHHHHHHHHCTT-CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 46789999988776 67889999999999999999999999999963
No 182
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=93.15 E-value=0.093 Score=43.76 Aligned_cols=46 Identities=22% Similarity=0.155 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEE
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDA 48 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~ 48 (349)
.+.+||..|..++. .+..++|+.+|++...|.+.++.|++.|+|.-
T Consensus 4 ~~~~il~~L~~~~~-~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 49 (150)
T 2pn6_A 4 IDLRILKILQYNAK-YSLDEIAREIRIPKATLSYRIKKLEKDGVIKG 49 (150)
T ss_dssp HHHHHHHHHTTCTT-SCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 46789999987765 67889999999999999999999999999864
No 183
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=92.87 E-value=0.1 Score=42.86 Aligned_cols=45 Identities=24% Similarity=0.334 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEE
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYID 47 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~ 47 (349)
.+.+||..|..++. .+..++|+.+|++...+.+.++.|++.|+|.
T Consensus 5 ~~~~il~~L~~~~~-~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 49 (141)
T 1i1g_A 5 RDKIILEILEKDAR-TPFTEIAKKLGISETAVRKRVKALEEKGIIE 49 (141)
T ss_dssp HHHHHHHHHHHCTT-CCHHHHHHHHTSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEe
Confidence 56789999987776 5788999999999999999999999999995
No 184
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=92.85 E-value=0.12 Score=42.15 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=45.3
Q ss_pred HHHHHHhhC--CCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHH
Q 018851 5 AILGYLEKN--EQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKK 64 (349)
Q Consensus 5 ~iL~~L~~~--~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~ 64 (349)
.||..|... +...+..++|+.+|++...|.+.+..|+..|+|....-..--|.|+....+
T Consensus 13 ~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~g~~ggy~L~~~~~~ 74 (129)
T 2y75_A 13 TIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGAYGGYVLGSEPDA 74 (129)
T ss_dssp HHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC----CCEEESSCGGG
T ss_pred HHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecCCCCCceEeCCCHHH
Confidence 567777653 345788999999999999999999999999999876554456787765443
No 185
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=92.80 E-value=0.023 Score=56.86 Aligned_cols=92 Identities=11% Similarity=0.086 Sum_probs=56.3
Q ss_pred CChHHHHHHHHHHHHhhCCceecCCCCceeeeehhhhccCCCCCCCCCCCCCeeeecCCCCCCCCCHHHHHHHHHHhhcC
Q 018851 215 LHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHESG 294 (349)
Q Consensus 215 ~HPl~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDaLf~PqdHPARd~~DTFyl~~p~~~~~~p~~~~erVk~vHe~G 294 (349)
......+.+.+++.|...||+|+.+ |.++.. | ||....|-..-..+.|-+.+..
T Consensus 67 ~~~~~~i~~~ir~~~~~~G~~ei~t-P~l~~~----e-l~~~sg~~d~~~~em~~~~d~~-------------------- 120 (458)
T 2i4l_A 67 HRVLKKIEQIVREEQNRAGAIELLM-PTLQLA----D-LWRESGRYDAYGPEMLRIADRH-------------------- 120 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECBC-CSEEEH----H-HHHHHTHHHHSCTTSEEEECTT--------------------
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEc-CccCcH----H-HHHhcCCccccccceEEEEeCC--------------------
Confidence 3457889999999999999999985 777654 1 2222233100011335554311
Q ss_pred CCCCCCcccccchhhhhccccCC---CCchhHHHHHHHhhcCCCCCceEEecCceecC
Q 018851 295 GYGSRGYGYEWKREEANKNLLRT---HTTAVSSRMLKALAEKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 295 g~gS~Gw~Y~W~~~~a~~~vLRT---HTTavs~r~L~~l~~~~~~p~k~fsi~rVfR~ 349 (349)
.+...||. ..|+.-+|.... +....|.|+|.+++|||.
T Consensus 121 ---------------~~~~~LrPt~ee~t~~i~r~~~~--s~~~lP~rl~~ig~~fR~ 161 (458)
T 2i4l_A 121 ---------------KRELLYGPTNEEMITEIFRAYIK--SYKSLPLNLYHIQWKFRD 161 (458)
T ss_dssp ---------------CCEEEECSCCHHHHHHHHHHHCC--BGGGCSEEEEEEEEEECC
T ss_pred ---------------CCeEEECCCChHHHHHHHHHHHh--hccccCeeeEEecCEeeC
Confidence 13579997 444555554322 112369999999999995
No 186
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=92.45 E-value=0.27 Score=45.02 Aligned_cols=84 Identities=19% Similarity=0.218 Sum_probs=62.0
Q ss_pred HHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHHHhhcCChHHHHHHhcCcCCC
Q 018851 5 AILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAAEGSPEVQLFLAVPAEGS 84 (349)
Q Consensus 5 ~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~l~~G~PE~rl~~~l~~~g~ 84 (349)
+||..|...+...+..++|+.+|++...+.+.+..|+..|+|... ...|.|+...-+....-..-..+.....
T Consensus 18 ~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~~G~v~~~---~~~Y~Lg~~~~~l~~~~~~~~~l~~~a~---- 90 (257)
T 2g7u_A 18 AVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGS---GGRWSLTPRVLSIGQHYSESHALIEAAM---- 90 (257)
T ss_dssp HHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE---TTEEEECGGGHHHHTTCCHHHHHHHHHH----
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeC---CCEEEEcHHHHHHHHHhhccCcHHHHHH----
Confidence 577777654444678899999999999999999999999999875 3689999998776655555555555442
Q ss_pred CCHHHHHhhcC
Q 018851 85 ISKDELQKKLD 95 (349)
Q Consensus 85 ~~~~el~~~~~ 95 (349)
-.+.+|....|
T Consensus 91 p~l~~L~~~~~ 101 (257)
T 2g7u_A 91 PRLLEVAEKTQ 101 (257)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHHC
Confidence 13456655544
No 187
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=92.42 E-value=0.19 Score=45.75 Aligned_cols=59 Identities=14% Similarity=0.112 Sum_probs=49.2
Q ss_pred HHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHH
Q 018851 4 EAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKK 64 (349)
Q Consensus 4 ~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~ 64 (349)
.+||..|...+...+..++|+.+|++.+.+.+.++.|+..|+|... ....|.|+...-+
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~~--~~~~Y~lg~~~~~ 69 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRK--KDKRYVPGYKLIE 69 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC--TTSCEEECTHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEC--CCCcEEECHHHHH
Confidence 3688888776544678899999999999999999999999999876 4568999987544
No 188
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=92.13 E-value=0.14 Score=42.95 Aligned_cols=46 Identities=13% Similarity=0.244 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEE
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDA 48 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~ 48 (349)
.+.+||..|..++. .+..++|+.+|++...|.+.++.|++.|+|..
T Consensus 8 ~~~~il~~L~~~~~-~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 53 (151)
T 2cyy_A 8 IDKKIIKILQNDGK-APLREISKITGLAESTIHERIRKLRESGVIKK 53 (151)
T ss_dssp HHHHHHHHHHHCTT-CCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 46789999988776 67889999999999999999999999999864
No 189
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=92.11 E-value=0.17 Score=43.84 Aligned_cols=46 Identities=13% Similarity=0.244 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEE
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDA 48 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~ 48 (349)
.+.+||..|..++. .+..+||+.+|++...|.+-++.|++.|+|..
T Consensus 28 ~d~~IL~~L~~~~~-~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~ 73 (171)
T 2e1c_A 28 IDKKIIKILQNDGK-APLREISKITGLAESTIHERIRKLRESGVIKK 73 (171)
T ss_dssp HHHHHHHHHHHCTT-CCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEe
Confidence 46789999988776 67889999999999999999999999999864
No 190
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=91.97 E-value=0.32 Score=44.13 Aligned_cols=85 Identities=15% Similarity=0.135 Sum_probs=60.7
Q ss_pred HHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHHHhhcCChHHHHHHhcCcCC
Q 018851 4 EAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAAEGSPEVQLFLAVPAEG 83 (349)
Q Consensus 4 ~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~l~~G~PE~rl~~~l~~~g 83 (349)
..||..|...+...+..++|+.+|++...+.+.+..|+..|+|.-... ...|.|+......... .-..+.....
T Consensus 9 l~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~~~~~-~~~Y~lg~~~~~lg~~--~~~~l~~~a~--- 82 (241)
T 2xrn_A 9 ASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEALGP-AGGFRLGPALGQLINQ--AQTDILSLVK--- 82 (241)
T ss_dssp HHHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEEECGG-GCEEEECSHHHHHHHH--HHHHHHHHHH---
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC-CCeEEECHHHHHHHhh--cccCHHHHHH---
Confidence 358888876654467889999999999999999999999999987533 4579999987765543 3334443332
Q ss_pred CCCHHHHHhhcC
Q 018851 84 SISKDELQKKLD 95 (349)
Q Consensus 84 ~~~~~el~~~~~ 95 (349)
-.+.+|....|
T Consensus 83 -p~l~~L~~~tg 93 (241)
T 2xrn_A 83 -PYLRSLAEELD 93 (241)
T ss_dssp -HHHHHHHHHHT
T ss_pred -HHHHHHHHHHC
Confidence 13456655544
No 191
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=91.74 E-value=0.14 Score=41.51 Aligned_cols=76 Identities=17% Similarity=0.183 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee--eeEE-----EEeChhHHHHhhcCChHHH
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI--KRET-----WVLTGEGKKYAAEGSPEVQ 74 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~--~~~~-----~~LTeEG~~~l~~G~PE~r 74 (349)
+-++||+.|...+...+ ++.+|++.......+..|...|||.--.. .... ..+|.+|.+||++.|-=.+
T Consensus 6 iiYkIL~~L~~~~~~is----~e~l~Ise~~~~~il~~L~d~GyI~Gv~~~~~~~~i~~~~~~IT~~GleYL~ENS~mkK 81 (102)
T 2hgc_A 6 LRYAILKEIFEGNTPLS----ENDIGVTEDQFDDAVNFLKREGYIIGVHYSDDRPHLYKLGPELTEKGENYLKENGTWSK 81 (102)
T ss_dssp CHHHHHHHHHHHCSCCC----HHHHTSCHHHHHHHHHHHHHHTSEECCEESSSSEECCSSCCEECHHHHHHHHHHTCSCC
T ss_pred eHHHHHHHHHhCCCcCC----HHhcCCCHHHHHHHHHHHHHCCCccceEEEeCcceeeccCceECHHHHHHHHHChHHHH
Confidence 35789999988543222 45679999999999999999999964322 1111 4599999999998776666
Q ss_pred HHHhcCc
Q 018851 75 LFLAVPA 81 (349)
Q Consensus 75 l~~~l~~ 81 (349)
+++.+++
T Consensus 82 a~k~lK~ 88 (102)
T 2hgc_A 82 AYKTIKE 88 (102)
T ss_dssp C------
T ss_pred HHHHHHH
Confidence 6666653
No 192
>1bm9_A RTP, TER, replication terminator protein; DNA-binding protein, contrahelicase; 2.00A {Bacillus subtilis} SCOP: a.4.5.7 PDB: 1f4k_A 1j0r_A 2dpd_A 2dpu_A 2efw_A* 2dqr_A
Probab=91.47 E-value=0.23 Score=41.49 Aligned_cols=65 Identities=9% Similarity=0.086 Sum_probs=46.3
Q ss_pred HHHHHHHHhhCCCCCC---hHHHHH-----HhCCCHHHHHHHHHHhccCCcEEEEeee---e-----EEEEeChhHHH--
Q 018851 3 EEAILGYLEKNEQISD---SGNFAA-----ERGFDHNDVVNVIKSLHGFRYIDAQDIK---R-----ETWVLTGEGKK-- 64 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~---~~~la~-----~~g~~~~~v~~~~~~L~~kgli~~~~~~---~-----~~~~LTeEG~~-- 64 (349)
..-||..|..... .- .+++.+ .+.+++.+|-.++..|+++|+|+.+... . ..|.||+.|+.
T Consensus 20 ~l~IL~ll~~~p~-YGYeI~~~L~e~~~~~~~~is~gtlYp~L~rLe~~Gll~~~~~~~~g~~r~~rkyY~lT~~G~~~~ 98 (122)
T 1bm9_A 20 KLYMITMTEQERL-YGLKLLEVLRSEFKEIGFKPNHTEVYRSLHELLDDGILKQIKVKKEGAKLQEVVLYQFKDYEAAKL 98 (122)
T ss_dssp HHHHHHHHHTTCC-BSTTHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHTTSEEEEEEECTTSTTCEEEEEEESCHHHHHH
T ss_pred HHHHHHHHccCCc-hHHHHHHHHHHhhccCcccCCcccHHHHHHHHHHCCCeEEEEeecCCCCCCceeEEEEChhhhhHH
Confidence 3457777765332 22 233432 2357889999999999999999887772 2 78999999999
Q ss_pred Hhhc
Q 018851 65 YAAE 68 (349)
Q Consensus 65 ~l~~ 68 (349)
|+++
T Consensus 99 ~~~~ 102 (122)
T 1bm9_A 99 YKKQ 102 (122)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 193
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=91.15 E-value=0.13 Score=41.15 Aligned_cols=48 Identities=8% Similarity=0.062 Sum_probs=40.1
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhC----CCHHHHHHHHHHhccCCcEEEEee
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERG----FDHNDVVNVIKSLHGFRYIDAQDI 51 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g----~~~~~v~~~~~~L~~kgli~~~~~ 51 (349)
|..||..|...+. .+..+|++.++ ++...|.+.+..|+.||+|..+..
T Consensus 37 e~~VL~~L~~~~~-~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~~ 88 (99)
T 2k4b_A 37 ELIVMRVIWSLGE-ARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEKE 88 (99)
T ss_dssp CSHHHHHHHHHSC-EEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEEE
T ss_pred HHHHHHHHHhCCC-CCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEeC
Confidence 5678999987665 67889999886 568999999999999999987654
No 194
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=90.97 E-value=0.32 Score=45.71 Aligned_cols=65 Identities=11% Similarity=0.212 Sum_probs=54.1
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHHHhhcCChHH
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAAEGSPEV 73 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~l~~G~PE~ 73 (349)
+..|...|.. ..+.++||+.+|+++..+.+.+..|.+.|+++... ..|.+|+.+..++..+.|.+
T Consensus 46 ~lgif~~l~~---~~t~~elA~~~~~~~~~l~rlLr~L~~~gll~~~~---~~y~~t~~s~~~l~~~~~~~ 110 (352)
T 3mcz_A 46 ADKLFDLTQT---GRTPAEVAASFGMVEGKAAILLHALAALGLLTKEG---DAFRNTALTERYLTTTSADY 110 (352)
T ss_dssp HTTHHHHTTS---CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET---TEEEECHHHHHHHSTTCTTC
T ss_pred HCChHHHhCC---CCCHHHHHHHhCcChHHHHHHHHHHHHCCCeEecC---CeeecCHHHHhhccCCChhh
Confidence 3446666643 37889999999999999999999999999998654 47999999999998888753
No 195
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=90.70 E-value=0.44 Score=45.09 Aligned_cols=64 Identities=19% Similarity=0.279 Sum_probs=54.1
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHHHhhcCCh
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAAEGSP 71 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~l~~G~P 71 (349)
+..|+..|.+ +. .+.++||+.+|+++..+.+.+.-|.+.|+++... ..|.+|+.+..++..++|
T Consensus 53 ~lgif~~L~~-~~-~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~---~~y~~t~~~~~~l~~~~~ 116 (359)
T 1x19_A 53 ELDLFSHMAE-GP-KDLATLAADTGSVPPRLEMLLETLRQMRVINLED---GKWSLTEFADYMFSPTPK 116 (359)
T ss_dssp HHTHHHHHTT-CC-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET---TEEEECHHHHHHSSSSCS
T ss_pred HcCcHHHHcC-CC-CCHHHHHHHhCcChHHHHHHHHHHHhCCCeEeeC---CeEecCHHHHHHhcCCCC
Confidence 4567777764 43 6889999999999999999999999999998753 389999998888888777
No 196
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=90.62 E-value=0.17 Score=40.50 Aligned_cols=47 Identities=23% Similarity=0.365 Sum_probs=37.1
Q ss_pred HHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEe
Q 018851 4 EAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQD 50 (349)
Q Consensus 4 ~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~ 50 (349)
..|+..|...+.+.+..+||+.+|++...|..++..|++.|+|....
T Consensus 31 ~~I~~~l~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 31 EHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp HHHTTSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHhhhcCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 44554443344333778999999999999999999999999998877
No 197
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=90.57 E-value=0.17 Score=50.80 Aligned_cols=91 Identities=13% Similarity=0.161 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHHhhCCceecCCCCceeeeehhhhccCCCCCCCCCCCCCeeeecCCCCCCCCCHHHHHHHHHHhhcCCC
Q 018851 217 PLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHESGGY 296 (349)
Q Consensus 217 Pl~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDaLf~PqdHPARd~~DTFyl~~p~~~~~~p~~~~erVk~vHe~Gg~ 296 (349)
-...+.+.+++.|...||+++.+ |.++.. |. |.-..|-..-..+.|.++.
T Consensus 51 ~~~~i~~~~~~~~~~~G~~ei~t-P~l~~~----~l-~~~sg~~~~~~~emy~~d~------------------------ 100 (471)
T 3a32_A 51 IRYALAEVLAKFHARRGYYVVET-PIIAST----EL-FKVSGHIEFYRNNMYLFDI------------------------ 100 (471)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCC-CSEEET----HH-HHHTCCCTTGGGGSEEEEE------------------------
T ss_pred HHHHHHHHHHHHHHHcCCEEEEC-Ceeeeh----HH-hhhccCccccccceEEEec------------------------
Confidence 36778888899999999999985 666542 21 1111232211223344421
Q ss_pred CCCCcccccchhhhhccccCCCCchhHHHHHHHh-hcC---CCCCceEEecCceecC
Q 018851 297 GSRGYGYEWKREEANKNLLRTHTTAVSSRMLKAL-AEK---PFAPKKVFLHRSCFQK 349 (349)
Q Consensus 297 gS~Gw~Y~W~~~~a~~~vLRTHTTavs~r~L~~l-~~~---~~~p~k~fsi~rVfR~ 349 (349)
..+...||.=+|+.-+|+.... .+. ...|.|++.++.|||.
T Consensus 101 ------------~~~~l~LRP~~t~~i~~~~~~~~~s~r~~~~lP~rl~~~g~vfR~ 145 (471)
T 3a32_A 101 ------------EGHEFAVKPMNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRY 145 (471)
T ss_dssp ------------TTEEEEECSCSHHHHHHHHHHHHHHHGGGSCSSEEEEEEEEEECC
T ss_pred ------------CCcEEEEccccHHHHHHHHHhhhhhccccccCCeEEeeccceecc
Confidence 1236899977777777776543 111 1469999999999994
No 198
>3l09_A Putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG, protein structure initiative transcription regulator; 2.81A {Jannaschia SP}
Probab=90.47 E-value=0.62 Score=43.71 Aligned_cols=56 Identities=7% Similarity=0.154 Sum_probs=48.5
Q ss_pred HHHHHHhCCCHHHHHHHHHHhccCCcEEEEee-eeEEEEeChhHHHHhhcCChHHHHHH
Q 018851 20 GNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI-KRETWVLTGEGKKYAAEGSPEVQLFL 77 (349)
Q Consensus 20 ~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~-~~~~~~LTeEG~~~l~~G~PE~rl~~ 77 (349)
..+.+.+|++...|..++..|..+|.++.++. -...|.||+.|++.++.| ..|++.
T Consensus 49 i~l~~~~Gi~~~avR~Al~RL~~~G~l~~~~~Gr~~~Y~Lt~~g~~~l~~~--~~ri~~ 105 (266)
T 3l09_A 49 SSFVERMGLQPQAMRVALHRLKRDGWVESRRLGRVGFHRLSDSALTQTRAV--AGRIYG 105 (266)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHTT--HHHHHS
T ss_pred HHHHHHcCCCchHHHHHHHHHHHCCCeeeeecCCcceEEECHHHHHHHHHH--HHHhcC
Confidence 34677899999999999999999999998865 334999999999999998 778876
No 199
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=90.43 E-value=0.32 Score=45.14 Aligned_cols=65 Identities=12% Similarity=0.125 Sum_probs=53.5
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHHHhhcCChH
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAAEGSPE 72 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~l~~G~PE 72 (349)
+..|+..|.+ +. .+.++||+.+|+++..+.+.+.-|.+.|+++. ....|.+|+.+..++..+.|.
T Consensus 28 ~l~i~~~l~~-~~-~t~~ela~~~~~~~~~l~r~L~~L~~~g~l~~---~~~~y~~t~~~~~~l~~~~~~ 92 (335)
T 2r3s_A 28 ELNVFTAISQ-GI-ESSQSLAQKCQTSERGMRMLCDYLVIIGFMTK---QAEGYRLTSDSAMFLDRQSKF 92 (335)
T ss_dssp HTTHHHHHTT-SE-ECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE---ETTEEEECHHHHHHTCTTSTT
T ss_pred HcChHHHHhc-CC-CCHHHHHHHhCCCchHHHHHHHHHHhcCCeEe---cCCEEecCHHHHHHhccCCcH
Confidence 4456777764 33 68899999999999999999999999999974 346899999998788777663
No 200
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=90.31 E-value=0.47 Score=44.13 Aligned_cols=35 Identities=11% Similarity=-0.038 Sum_probs=26.0
Q ss_pred ccccCCCCchhHHHHHHHhhcCCC-CCceEEecCceecC
Q 018851 312 KNLLRTHTTAVSSRMLKALAEKPF-APKKVFLHRSCFQK 349 (349)
Q Consensus 312 ~~vLRTHTTavs~r~L~~l~~~~~-~p~k~fsi~rVfR~ 349 (349)
...||.=.|+.-+ -.++. ... .|.|+|.+|.|||.
T Consensus 47 ~l~LRpd~T~~~a--~~~~~-~~~~~p~R~~y~g~vfR~ 82 (275)
T 1usy_A 47 LFSIREDFTKTVL--NHRKR-YSPDSQIKVWYADFVYRY 82 (275)
T ss_dssp EEEECCCHHHHHH--HHHTT-CTTCCCEEEECCEEEEEE
T ss_pred EEEeCCcChHHHH--HHHhh-cCCCCceEEEEeceEEec
Confidence 6899999998777 22222 223 69999999999993
No 201
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=90.16 E-value=0.23 Score=45.61 Aligned_cols=58 Identities=9% Similarity=0.158 Sum_probs=46.6
Q ss_pred HHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHH
Q 018851 5 AILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKK 64 (349)
Q Consensus 5 ~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~ 64 (349)
+||.+|...+...+..++|+.+|++...+.+.+..|+..|+|...... .|.|+...-+
T Consensus 27 ~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~~G~v~~~~~~--~Y~lg~~~~~ 84 (260)
T 2o0y_A 27 DLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCARSVLTSRADG--SYSLGPEMLR 84 (260)
T ss_dssp HHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEECTTS--CEEECHHHHH
T ss_pred HHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCCC--eEEecHHHHH
Confidence 467777543333678999999999999999999999999999876433 8999887544
No 202
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=89.96 E-value=0.065 Score=55.90 Aligned_cols=91 Identities=12% Similarity=0.134 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhhCCceecCCCCceeeeehhhhccCCCCCCCCCCCCCeeeecCCCCCCCCCHHHHHHHHHHhhcCCCC
Q 018851 218 LLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHESGGYG 297 (349)
Q Consensus 218 l~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDaLf~PqdHPARd~~DTFyl~~p~~~~~~p~~~~erVk~vHe~Gg~g 297 (349)
...+.+.+++.|...||+|+.+ |.++.. .||.-..|-.--..+.|-+.+
T Consensus 274 ~~~l~~~ir~~~~~~Gy~eV~t-P~l~~~-----~l~~~sG~~d~~~~~mf~~~d------------------------- 322 (645)
T 1nyr_A 274 RREIERYIVDKEVSMGYDHVYT-PVLANV-----DLYKTSGHWDHYQEDMFPPMQ------------------------- 322 (645)
T ss_dssp HHHHHHHHHHHHHHTTEEECBC-CSEEET-----HHHHHHTHHHHCTTSSCCCEE-------------------------
T ss_pred HHHHHHHHHHHHHHcCCEEEEC-CeeccH-----HHHhhCCCccccccCcceeEe-------------------------
Confidence 5677888999999999999985 777553 111111111000011222211
Q ss_pred CCCcccccchhhh-hccccCCCCchhHHHHHHHhhc-CCCCCceEEecCceecC
Q 018851 298 SRGYGYEWKREEA-NKNLLRTHTTAVSSRMLKALAE-KPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 298 S~Gw~Y~W~~~~a-~~~vLRTHTTavs~r~L~~l~~-~~~~p~k~fsi~rVfR~ 349 (349)
... +...||.-+|+.-+|+...... ....|.|+|.+|.|||.
T Consensus 323 ----------~~~~~~~~LrP~~~~~~~~~~~~~~~syr~LPlrl~~~g~~fR~ 366 (645)
T 1nyr_A 323 ----------LDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRY 366 (645)
T ss_dssp ----------ETTTEEEEECSSSHHHHHHHHHTSCCBGGGCCEEEEEEEEEECC
T ss_pred ----------cCCCeEEEeCCCCCHHHHHHHHhhhhhccCCCeEEEEeccEEec
Confidence 011 3689999888888888764311 12369999999999994
No 203
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=89.80 E-value=0.47 Score=45.96 Aligned_cols=27 Identities=15% Similarity=0.308 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhhCCceecCCCCceeee
Q 018851 219 LKVRKQLKDIFLQMGFEEMPTNNFVESS 246 (349)
Q Consensus 219 ~~~~~~ir~if~~mGF~e~~~~~~Ves~ 246 (349)
.+++..||++|.+.||.|+.| |.+..+
T Consensus 40 s~i~~~iR~ff~~~gF~EVeT-PiL~~~ 66 (345)
T 3a5y_A 40 AAIMAEIRRFFADRGVLEVET-PCMSQA 66 (345)
T ss_dssp HHHHHHHHHHHHHTTCEECCC-CSEESS
T ss_pred HHHHHHHHHHHHHCCCEEEEC-CEEEec
Confidence 367788999999999999986 777643
No 204
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=89.77 E-value=0.36 Score=46.06 Aligned_cols=67 Identities=10% Similarity=0.120 Sum_probs=52.8
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHHHhhcCChHH
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAAEGSPEV 73 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~l~~G~PE~ 73 (349)
+..|...|...+...+.++||+.+|+++..+.+.+.-|.+.|+++.+ ...|.+|+.++ ++..+.|-.
T Consensus 37 ~lgifd~L~~~~~~~t~~eLA~~~g~~~~~l~rlLr~l~~~g~l~~~---~~~y~~t~~s~-~L~~~~~~~ 103 (363)
T 3dp7_A 37 KFGIFQLLSGKREGYTLQEISGRTGLTRYAAQVLLEASLTIGTILLE---EDRYVLAKAGW-FLLNDKMAR 103 (363)
T ss_dssp HTTHHHHHHTCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE---TTEEEECHHHH-HHHHCHHHH
T ss_pred HhCHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCeEec---CCEEecccchH-HhhCCCccc
Confidence 34567777763334788999999999999999999999999999653 56899999995 565555543
No 205
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=89.60 E-value=0.15 Score=38.72 Aligned_cols=50 Identities=18% Similarity=0.257 Sum_probs=42.8
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHH-HHHHHHHhccCCcEEEEeeee
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHND-VVNVIKSLHGFRYIDAQDIKR 53 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~-v~~~~~~L~~kgli~~~~~~~ 53 (349)
|.+|+..|..++. ...-.+|+.+|+.... |...+..|+.++++...+...
T Consensus 12 ee~I~~fL~~~Gp-~~AL~IAK~LGlktAK~VNp~LY~m~~~~lL~~Dek~~ 62 (72)
T 3eyi_A 12 EEDIYRFLKDNGP-QRALVIAQALGMRTAKDVNRDLYRMKSRHLLDMDEQSK 62 (72)
T ss_dssp HHHHHHHHHHHCS-EEHHHHHHHTTCCSGGGTHHHHHHHHHTTSEEECTTTC
T ss_pred HHHHHHHHHHcCC-chHHHHHHHhCcchhhhcCHHHHHHHHccCcCCCCCCC
Confidence 6789999998887 5677899999998877 999999999999998765433
No 206
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=89.25 E-value=0.097 Score=52.16 Aligned_cols=27 Identities=11% Similarity=0.176 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhCCceecCCCCceee
Q 018851 218 LLKVRKQLKDIFLQMGFEEMPTNNFVES 245 (349)
Q Consensus 218 l~~~~~~ir~if~~mGF~e~~~~~~Ves 245 (349)
...+.+.+++.|...||+++.+ |.++.
T Consensus 175 ~~~L~~~~~~~~~~~Gy~ev~t-P~l~~ 201 (425)
T 2dq3_A 175 ERALINFMLDLHTKKGYKEICP-PHLVK 201 (425)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEC-CSEEC
T ss_pred HHHHHHHHHHHHHHcCCEEEEC-Ccccc
Confidence 5677788899999999999985 66543
No 207
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=89.19 E-value=0.49 Score=47.65 Aligned_cols=95 Identities=12% Similarity=0.103 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhhCCceecCCCCceeeeehhhhccCCC-CCCCCCCCCCeeeecCCCCCCCCCHHHHHHHHHHhhcCCC
Q 018851 218 LLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQP-QQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHESGGY 296 (349)
Q Consensus 218 l~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDaLf~P-qdHPARd~~DTFyl~~p~~~~~~p~~~~erVk~vHe~Gg~ 296 (349)
...+.+.+++.|...||+++.+ |.+++. .||.- -.|-.-=..+.|.+.+. |
T Consensus 47 ~~~I~~~~r~~~~~~G~~ei~t-P~l~~~-----el~~~~sgh~d~f~~emy~~~d~--------------------g-- 98 (477)
T 1hc7_A 47 WENIQQVLDRMFKETGHQNAYF-PLFIPM-----SFLRKEAEHVEGFSPELAVVTHA--------------------G-- 98 (477)
T ss_dssp HHHHHHHHHHHHHHTTCEECBC-CSEEES-----TTC---------CCTTCEEEEEE--------------------S--
T ss_pred HHHHHHHHHHHHHHcCCEEEec-CccccH-----HHHhhcCCcccccccceEEEECC--------------------C--
Confidence 5677888899999999999985 666544 22222 33421111234555431 0
Q ss_pred CCCCcccccchhhhhccccCCCCchhHHHHHHHhh-cCCCCCceEEecCceecC
Q 018851 297 GSRGYGYEWKREEANKNLLRTHTTAVSSRMLKALA-EKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 297 gS~Gw~Y~W~~~~a~~~vLRTHTTavs~r~L~~l~-~~~~~p~k~fsi~rVfR~ 349 (349)
+.+..+...||.=+|+.-+++..... +....|.|++.++.|||.
T Consensus 99 ---------~~~l~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~vfR~ 143 (477)
T 1hc7_A 99 ---------GEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRW 143 (477)
T ss_dssp ---------SSEEEEEEEECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECC
T ss_pred ---------CccCCCeEEEcCCCcHHHHHHHHhhhhccccCCeeeEeecCEEeC
Confidence 00113468999766666666665432 222469999999999994
No 208
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=88.48 E-value=0.27 Score=43.14 Aligned_cols=58 Identities=16% Similarity=0.183 Sum_probs=43.4
Q ss_pred HHHHHHHHh----hCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeCh
Q 018851 3 EEAILGYLE----KNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTG 60 (349)
Q Consensus 3 e~~iL~~L~----~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTe 60 (349)
|.+||..+. ..+...+..++|+.+|++...|.+.++.|+.+|+|.........+.|++
T Consensus 7 q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~~~~~~r~i~~~~ 68 (196)
T 3k2z_A 7 QRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALEKKGYIERKNGKPRALRISK 68 (196)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC---TTCCEESS
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEecCCCcceEEecC
Confidence 566666654 3454467899999999999999999999999999987655555566664
No 209
>2rkh_A Putative APHA-like transcription factor; ZP_00208345.1, STRU genomics, joint center for structural genomics, JCSG; 2.00A {Magnetospirillum magnetotacticum}
Probab=88.29 E-value=0.086 Score=46.74 Aligned_cols=64 Identities=13% Similarity=0.114 Sum_probs=46.0
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHh----CCCHHHHHH----HHHHhccCCcEEEEe-----eeeEEEEeChhHHHHhh
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAER----GFDHNDVVN----VIKSLHGFRYIDAQD-----IKRETWVLTGEGKKYAA 67 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~----g~~~~~v~~----~~~~L~~kgli~~~~-----~~~~~~~LTeEG~~~l~ 67 (349)
+...||..|..... ..+++.+.+ .++..+|.. +++.|+.+|+|++.. .+++.|.+||.|++.+.
T Consensus 14 ~~l~VLGlL~e~p~--h~Yei~~~i~~~~~~s~gSiY~~~~~~l~~Le~~GlI~~~~~~~~rpektvY~ITe~Gr~~l~ 90 (180)
T 2rkh_A 14 VRLCALGTIASQPM--RYSELAGSVRHFTSRIMGPSLELMGISIELLRYEGLVEAVDDGQGMEDDAMLAISAAGRRELH 90 (180)
T ss_dssp HHHHHHHHHHHSCE--EHHHHHHHHHHHHHHHHSCCGGGTTCCTHHHHHTTSEECCC--------CEEEECHHHHHHHH
T ss_pred HHHHHHHHHHhCCC--CHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHCCCeeeeecCCCCCccceeeeCHHHHHHHH
Confidence 46778988886653 677776532 234556667 999999999996544 35678999999999885
No 210
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=88.16 E-value=0.83 Score=40.38 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEE
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQ 49 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~ 49 (349)
...+||..|. ++. .+..++|+.+|++...|.+.++.|+..|+|...
T Consensus 21 ~~~~IL~~L~-~~~-~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 21 TRRKILKLLR-NKE-MTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHHHHHHT-TCC-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHH-cCC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3567999998 454 678899999999999999999999999999876
No 211
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.14 E-value=0.48 Score=37.83 Aligned_cols=49 Identities=16% Similarity=0.229 Sum_probs=40.4
Q ss_pred HHHHHHHHHhh--CCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee
Q 018851 2 AEEAILGYLEK--NEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI 51 (349)
Q Consensus 2 ~e~~iL~~L~~--~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~ 51 (349)
.|..|+..+.. +.. .-..+|...+++++..|.+.++.|++++||..-..
T Consensus 38 ~E~lVy~~I~~aGn~G-Iw~kdL~~~tnL~~~~vtkiLK~LE~k~lIK~Vks 88 (95)
T 2yu3_A 38 QEKLVYQIIEDAGNKG-IWSRDVRYKSNLPLTEINKILKNLESKKLIKAVKS 88 (95)
T ss_dssp HHHHHHHHHHHHTTSC-EEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEECC
T ss_pred HHHHHHHHHHHhCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHhCCCEEEecC
Confidence 47778888876 333 45679999999999999999999999999976543
No 212
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=87.97 E-value=0.37 Score=44.80 Aligned_cols=58 Identities=5% Similarity=0.051 Sum_probs=46.6
Q ss_pred HHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHH
Q 018851 4 EAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGK 63 (349)
Q Consensus 4 ~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~ 63 (349)
..||.+|...+...+..++|+.+|++.+.+.+.+..|+..|+|.-.. ...|.|+..--
T Consensus 33 l~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~~~~--~~~Y~LG~~~~ 90 (275)
T 3mq0_A 33 VRILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTELDLLARSA--DGTLRIGPHSL 90 (275)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEEECT--TSEEEECTHHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECC--CCcEEehHHHH
Confidence 35889998766546788999999999999999999999999998764 35799987643
No 213
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=87.68 E-value=0.9 Score=43.48 Aligned_cols=69 Identities=12% Similarity=0.047 Sum_probs=52.9
Q ss_pred HHHHHHHHhhCC-CCCChHHHHHHhCC--CHH---HHHHHHHHhccCCcEEEEee------eeEEEEeChhHHHHhhcCC
Q 018851 3 EEAILGYLEKNE-QISDSGNFAAERGF--DHN---DVVNVIKSLHGFRYIDAQDI------KRETWVLTGEGKKYAAEGS 70 (349)
Q Consensus 3 e~~iL~~L~~~~-~~~~~~~la~~~g~--~~~---~v~~~~~~L~~kgli~~~~~------~~~~~~LTeEG~~~l~~G~ 70 (349)
+..|...|...+ ...+.++||+.+|+ ++. .+.+.+.-|.+.|+++.... ....|.||+.++.++.+.+
T Consensus 42 ~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~ 121 (364)
T 3p9c_A 42 ELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNED 121 (364)
T ss_dssp HHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEEEEEECSSSCEEEEEEECGGGGGSSCCTT
T ss_pred HCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEEeccccCCCCcCCEEecCHHHHHHcCCCC
Confidence 456778887743 34788999999997 665 78899999999999987642 1468999999987666554
Q ss_pred h
Q 018851 71 P 71 (349)
Q Consensus 71 P 71 (349)
|
T Consensus 122 ~ 122 (364)
T 3p9c_A 122 G 122 (364)
T ss_dssp S
T ss_pred C
Confidence 4
No 214
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=87.40 E-value=0.12 Score=51.33 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhCCceecCCCCceee
Q 018851 218 LLKVRKQLKDIFLQMGFEEMPTNNFVES 245 (349)
Q Consensus 218 l~~~~~~ir~if~~mGF~e~~~~~~Ves 245 (349)
.+.+++.+++.+...||+++.+ |.++.
T Consensus 169 ~~aL~~~~~~~~~~~Gy~ev~t-P~l~~ 195 (421)
T 1ses_A 169 ELALLRFAMDFMARRGFLPMTL-PSYAR 195 (421)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEC-CSEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEeC-Cceec
Confidence 5677888899999999999985 66543
No 215
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=87.26 E-value=0.22 Score=50.53 Aligned_cols=94 Identities=15% Similarity=0.152 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhhCCceecCCCCceeee-ehhhhccCCCCCCCCCCCCCeeeecCCCCCCCCCHHHHHHHHHHhhcCCC
Q 018851 218 LLKVRKQLKDIFLQMGFEEMPTNNFVESS-FWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHESGGY 296 (349)
Q Consensus 218 l~~~~~~ir~if~~mGF~e~~~~~~Ves~-fwNFDaLf~PqdHPARd~~DTFyl~~p~~~~~~p~~~~erVk~vHe~Gg~ 296 (349)
...+.+.+++.|.. ||+++.+ |.+++. .|- ---.|-..=..+.|.+.+. |
T Consensus 74 ~~~i~~~~~~~~~~-G~~ei~t-P~l~~~~l~~-----~~sG~~~~f~~emy~~~d~--------------------g-- 124 (501)
T 1nj1_A 74 RKNTLKILRRILDR-DHEEVLF-PLLVPEDELA-----KEAIHVKGFEDEVYWVTHG--------------------G-- 124 (501)
T ss_dssp HHHHHHHHHHHHTT-TCEECCC-CSEEEHHHHT-----TSHHHHHHTTTTCCEEEEE--------------------T--
T ss_pred HHHHHHHHHHHHHc-CCEEEec-CcEecHHHHh-----cccCCcccCCcceEEEecC--------------------C--
Confidence 46678888999999 9999985 666543 221 0001110001133555420 0
Q ss_pred CCCCcccccchhhhhccccCCCCchhHHHHHHHhh-cCCCCCceEEecCceecC
Q 018851 297 GSRGYGYEWKREEANKNLLRTHTTAVSSRMLKALA-EKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 297 gS~Gw~Y~W~~~~a~~~vLRTHTTavs~r~L~~l~-~~~~~p~k~fsi~rVfR~ 349 (349)
..+..+...||.=+|+.-+++..... +....|.|++.++.|||.
T Consensus 125 ---------~~~~~~~l~LrPt~e~~i~~~~~~~~~s~~~LPlr~~q~g~~fR~ 169 (501)
T 1nj1_A 125 ---------LSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRY 169 (501)
T ss_dssp ---------TEEEEEEEEECSSSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECC
T ss_pred ---------CcccCCeeEEccCCCHHHHHHHHhhhcccccCCEEEEeecCEeeC
Confidence 00112468999766666667665432 223469999999999994
No 216
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=87.16 E-value=0.79 Score=37.71 Aligned_cols=55 Identities=15% Similarity=0.183 Sum_probs=44.4
Q ss_pred HHHHHHHhhCCCCCChHHHHHHh-----CCCHHHHHHHHHHhccCCcEEEEee--eeEEEEe
Q 018851 4 EAILGYLEKNEQISDSGNFAAER-----GFDHNDVVNVIKSLHGFRYIDAQDI--KRETWVL 58 (349)
Q Consensus 4 ~~iL~~L~~~~~~~~~~~la~~~-----g~~~~~v~~~~~~L~~kgli~~~~~--~~~~~~L 58 (349)
..||..|.+.+...+.+++.+.+ +++..+|.+.+..|.+.|+|..-.. ....|.+
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~~~~~~~y~~ 75 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHTDTGESVYRR 75 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEECTTSCEEEEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEeCCCceEEEe
Confidence 56999998766557889988877 8999999999999999999976554 3346665
No 217
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=87.12 E-value=0.39 Score=44.20 Aligned_cols=55 Identities=13% Similarity=0.219 Sum_probs=45.1
Q ss_pred HHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhH
Q 018851 5 AILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEG 62 (349)
Q Consensus 5 ~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG 62 (349)
.||.+|...+...+..++|+.+|++.+.+.+.+..|+..|+|.-. ...|.|+..-
T Consensus 25 ~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~~G~v~~~---~~~Y~Lg~~~ 79 (265)
T 2ia2_A 25 AVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELGYVATD---GSAFWLTPRV 79 (265)
T ss_dssp HHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEES---SSEEEECGGG
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec---CCEEEEcHHH
Confidence 577777654434677899999999999999999999999999875 3689998754
No 218
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=86.93 E-value=2 Score=33.46 Aligned_cols=53 Identities=6% Similarity=-0.063 Sum_probs=43.6
Q ss_pred HHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeE-EEEe
Q 018851 5 AILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRE-TWVL 58 (349)
Q Consensus 5 ~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~-~~~L 58 (349)
+|-.+|.+.+. .+..++++.+|++..++..|+.||.-.+=|.+++.... .+.|
T Consensus 12 ~VW~~L~~~~~-~s~~el~k~t~l~d~el~lAIGWLaREdKI~~~~~~~~l~v~L 65 (82)
T 2l02_A 12 KVWHALNEADG-ISIPELARKVNLSVESTALAVGWLARENKVVIERKNGLIEIYN 65 (82)
T ss_dssp HHHHHHHHCCS-BCHHHHHHHHTCCHHHHHHHHHHHHTTTSEEEEEETTEEEEEE
T ss_pred HHHHHHhccCC-CCHHHHHHHhCCCHHHHHHHHHHHhccCceeEEeeCCEEEEEE
Confidence 46778887764 78899999999999999999999999999998876443 3344
No 219
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=86.34 E-value=0.71 Score=40.21 Aligned_cols=56 Identities=25% Similarity=0.364 Sum_probs=44.3
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCc-EEEEeeeeEEEEeChh
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRY-IDAQDIKRETWVLTGE 61 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgl-i~~~~~~~~~~~LTeE 61 (349)
..+||..|..++...+..+||+.+|++...|.+.++.|++.|+ |... ..-|.|+..
T Consensus 23 ~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~~~---~~Gy~l~~~ 79 (187)
T 1j5y_A 23 LKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVAT---PRGYVLAGG 79 (187)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEEE---TTEEECCTT
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE---CCEEEECCc
Confidence 4578999986544468899999999999999999999999998 7552 245666643
No 220
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=86.31 E-value=0.45 Score=47.60 Aligned_cols=95 Identities=14% Similarity=0.152 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhhCCceecCCCCceeee-ehhhhccCCCCCCCCCCCCCeeeecCCCCCCCCCHHHHHHHHHHhhcCCC
Q 018851 218 LLKVRKQLKDIFLQMGFEEMPTNNFVESS-FWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHESGGY 296 (349)
Q Consensus 218 l~~~~~~ir~if~~mGF~e~~~~~~Ves~-fwNFDaLf~PqdHPARd~~DTFyl~~p~~~~~~p~~~~erVk~vHe~Gg~ 296 (349)
...+.+.+++.|...||+++.+ |.+++. .|.= -..|-.--..+.|.+.+. |
T Consensus 41 ~~~i~~~~~~~~~~~G~~ei~t-P~l~~~~l~~~-----~~G~~~~~~~emy~~~d~---------------------g- 92 (459)
T 1nj8_A 41 RRYTFEIIRNLLDESGHDEALF-PMLIPEDLLAK-----EAEHIKGFEDEVYWVTHG---------------------G- 92 (459)
T ss_dssp HHHHHHHHHHHHHHTTCEECBC-CSEEEHHHHHH-----HCSSSGGGGGGCEEEEES---------------------S-
T ss_pred HHHHHHHHHHHHHHcCCEEeeC-CcccCHHHHhh-----hcCcccccchhhEEEecc---------------------C-
Confidence 4567788889999999999985 666552 2210 123321001234555421 0
Q ss_pred CCCCcccccchhhhhccccCCCCchhHHHHHHHhh-cCCCCCceEEecCceecC
Q 018851 297 GSRGYGYEWKREEANKNLLRTHTTAVSSRMLKALA-EKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 297 gS~Gw~Y~W~~~~a~~~vLRTHTTavs~r~L~~l~-~~~~~p~k~fsi~rVfR~ 349 (349)
..+..+...||.-+|+.-+++..+.. +....|.|++.++.|||.
T Consensus 93 ---------~~~~~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~~fR~ 137 (459)
T 1nj8_A 93 ---------KTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRY 137 (459)
T ss_dssp ---------SSEEEEEEEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCC
T ss_pred ---------cccCCCeeEECCCCcHHHHHHHHHhhhhcccCCeEEEEEccEecC
Confidence 00112478999888887788775431 123469999999999994
No 221
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=86.29 E-value=1.1 Score=37.51 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=45.2
Q ss_pred HHHHHHHhhCCCCCChHHHHHHh-----CCCHHHHHHHHHHhccCCcEEEEeee--eEEEEeC
Q 018851 4 EAILGYLEKNEQISDSGNFAAER-----GFDHNDVVNVIKSLHGFRYIDAQDIK--RETWVLT 59 (349)
Q Consensus 4 ~~iL~~L~~~~~~~~~~~la~~~-----g~~~~~v~~~~~~L~~kgli~~~~~~--~~~~~LT 59 (349)
..||..|...+...+.+++.+.+ +++...|.+.+..|.+.|+|...... ...|.+.
T Consensus 25 ~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~ 87 (145)
T 2fe3_A 25 HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTYGDASSRFDFV 87 (145)
T ss_dssp HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECCTTSCCEEEEC
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEeeCCCceEEECC
Confidence 56899998765557889998877 89999999999999999999765542 4467764
No 222
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=86.16 E-value=0.9 Score=46.10 Aligned_cols=26 Identities=12% Similarity=0.266 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhhCCceecCCCCceeee
Q 018851 220 KVRKQLKDIFLQMGFEEMPTNNFVESS 246 (349)
Q Consensus 220 ~~~~~ir~if~~mGF~e~~~~~~Ves~ 246 (349)
+++..||++|.+.||.|+.| |.+++.
T Consensus 179 ~i~~~iR~ff~~~gF~EVeT-PiL~~~ 204 (493)
T 3a74_A 179 LIIQSMRRYLDSHGYLEVET-PMMHAV 204 (493)
T ss_dssp HHHHHHHHHHHHTTCEECCC-CSEESS
T ss_pred HHHHHHHHHHHhCCeEEEEC-CeEEec
Confidence 56778999999999999986 788654
No 223
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=86.00 E-value=0.68 Score=38.96 Aligned_cols=59 Identities=14% Similarity=0.097 Sum_probs=44.8
Q ss_pred HHHHHHhhC-CCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHH
Q 018851 5 AILGYLEKN-EQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKK 64 (349)
Q Consensus 5 ~iL~~L~~~-~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~ 64 (349)
.+|..|... +...++.++|+.+|+++..|.+.+..|...|+|....- .--|.|+....+
T Consensus 18 ~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG-~GGy~L~~~p~~ 77 (149)
T 1ylf_A 18 HILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG-PGGAGLLKDLHE 77 (149)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC----CCEEESSCGGG
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccC-CCceEeCCChhh
Confidence 466666642 34578899999999999999999999999999987766 556788766433
No 224
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=85.86 E-value=0.19 Score=50.57 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhCCceecCCCCceee
Q 018851 218 LLKVRKQLKDIFLQMGFEEMPTNNFVES 245 (349)
Q Consensus 218 l~~~~~~ir~if~~mGF~e~~~~~~Ves 245 (349)
...+++.+++.+...||+++.+ |.++.
T Consensus 196 ~~aL~~~~~~~~~~~Gy~ev~t-P~l~~ 222 (455)
T 2dq0_A 196 DLALIRFALDRLIEKGFTPVIP-PYMVR 222 (455)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEC-CSEEC
T ss_pred HHHHHHHHHHHHHHcCCEEEeC-CcccC
Confidence 4667788888998999999985 66543
No 225
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=85.76 E-value=1.1 Score=45.75 Aligned_cols=91 Identities=10% Similarity=0.167 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhhCCceecCCCCceeeeehhhhccCCCCCCCCCCCCCeeeecCCCCCCCCCHHHHHHHHHHhhcCCCC
Q 018851 218 LLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHESGGYG 297 (349)
Q Consensus 218 l~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDaLf~PqdHPARd~~DTFyl~~p~~~~~~p~~~~erVk~vHe~Gg~g 297 (349)
...+.+.+++.|...||+|+.+ |.++..- ||.-..|-..-..+.|.+.+.
T Consensus 50 ~~~i~~~~~~~~~~~G~~ei~t-P~l~~~~-----l~~~sG~~~~~~~~m~~~~d~------------------------ 99 (572)
T 2j3l_A 50 LEKLKTIMREEFEKIDAVEMLM-PALLPAE-----LWKESGRYETYGPNLYRLKDR------------------------ 99 (572)
T ss_dssp HHHHHHHHHHHHHTTTCEECBC-CSEEETH-----HHHHHSHHHHSCTTSCEEECT------------------------
T ss_pred HHHHHHHHHHHHHHcCCEEEEC-CccccHH-----HHHhcCCccccchheEEEecC------------------------
Confidence 5778888999999999999985 6665431 111111100001123444331
Q ss_pred CCCcccccchhhhhccccCCCCchhHHHHHHHhh-cCCCCCceEEecCceecC
Q 018851 298 SRGYGYEWKREEANKNLLRTHTTAVSSRMLKALA-EKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 298 S~Gw~Y~W~~~~a~~~vLRTHTTavs~r~L~~l~-~~~~~p~k~fsi~rVfR~ 349 (349)
..+...||.=+|+.-+++..... +....|.|++.++.|||.
T Consensus 100 -----------~~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~ 141 (572)
T 2j3l_A 100 -----------NDRDYILGPTHEETFTELIRDEINSYKRLPLNLYQIQTKYRD 141 (572)
T ss_dssp -----------TCCEEEECSCCHHHHHHHHHHHCCBGGGCCEEEEEEEEEECC
T ss_pred -----------CCCeEEEccccHHHHHHHHHhhccChhhcCHhhheecCeecc
Confidence 11368999766666667665432 112369999999999994
No 226
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=85.75 E-value=1.4 Score=41.65 Aligned_cols=68 Identities=15% Similarity=0.176 Sum_probs=52.6
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCC---CHHHHHHHHHHhccCCcEEEEee---e-----eEEEEeChhHHHHhhcCCh
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGF---DHNDVVNVIKSLHGFRYIDAQDI---K-----RETWVLTGEGKKYAAEGSP 71 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~---~~~~v~~~~~~L~~kgli~~~~~---~-----~~~~~LTeEG~~~l~~G~P 71 (349)
+..|+..|...+...+.++||+.+|+ ++..+.+.+.-|.+.|+++.... . ...|.+|+.++ ++..+.|
T Consensus 32 ~lgif~~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~g~~~~~y~~t~~s~-~l~~~~~ 110 (358)
T 1zg3_A 32 ELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSK-LLISGKP 110 (358)
T ss_dssp HHTHHHHHHHHTSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEEEECCSSSSCCCEEEEEECHHHH-TTCTTST
T ss_pred HCChHhHHhhcCCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEecccccccCCCCCCEEeCCHHHH-HHhCCCC
Confidence 55677888764323678999999999 57889999999999999987620 1 46899999997 5656665
No 227
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=85.59 E-value=0.64 Score=47.50 Aligned_cols=96 Identities=14% Similarity=0.088 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhhCCceecCCCCceeeeehhhhccCCCCCCCCCCCCCeeeecCCCCCCCCCHHHHHHHHHHhhcCCCC
Q 018851 218 LLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHESGGYG 297 (349)
Q Consensus 218 l~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDaLf~PqdHPARd~~DTFyl~~p~~~~~~p~~~~erVk~vHe~Gg~g 297 (349)
...+.+.+++.|...||+++.+ |.+++. +.+.---.|-.-=..+.|++.+...
T Consensus 64 ~~~L~~~~~~~~~~~Gy~ev~t-P~l~~~----~l~~k~sGh~~~f~~emy~~~d~g~---------------------- 116 (519)
T 4hvc_A 64 WEAIKDFFDAEIKKLGVENCYF-PMFVSQ----SALEKEKTHVADFAPEVAWVTRSGK---------------------- 116 (519)
T ss_dssp HHHHHHHHHHHHHHTTCEECBC-CSEEEH----HHHTTSCCSCGGGGGGCEEEEEETT----------------------
T ss_pred HHHHHHHHHHHHHHcCCEEEec-cccccH----HHHhcccCCcccccccceEEeccCC----------------------
Confidence 4667788888999999999985 665332 2221112342111123455542100
Q ss_pred CCCcccccchhhhhccccCCCCchhHHHHHHHhh-cCCCCCceEEecCceecC
Q 018851 298 SRGYGYEWKREEANKNLLRTHTTAVSSRMLKALA-EKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 298 S~Gw~Y~W~~~~a~~~vLRTHTTavs~r~L~~l~-~~~~~p~k~fsi~rVfR~ 349 (349)
.+....+.||.=.++.-+++....- +....|.|++.++.|||.
T Consensus 117 ---------~~l~e~l~LrPtse~~i~~~~~~~i~SyrdLPlrl~q~g~~fR~ 160 (519)
T 4hvc_A 117 ---------TELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRW 160 (519)
T ss_dssp ---------EEEEEEEEECSSSHHHHHHHHHHHCSSGGGCCEEEEEEEEEECC
T ss_pred ---------cccccceeeCCCCcHHHHHHHHhhccccccCCeEEEEEcCeeeC
Confidence 0001258999655555555554321 112369999999999994
No 228
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=85.44 E-value=0.44 Score=43.76 Aligned_cols=59 Identities=10% Similarity=0.258 Sum_probs=46.6
Q ss_pred HHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHH
Q 018851 5 AILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKK 64 (349)
Q Consensus 5 ~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~ 64 (349)
+||.+|...+...+..++|+.+|++.+.+.+.+..|+..|+|.-.. ....|.|+..=-.
T Consensus 10 ~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~~~~-~~~~Y~lG~~~~~ 68 (260)
T 3r4k_A 10 TLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQEAGFVEQVE-GARSYRLGPQVLR 68 (260)
T ss_dssp HHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEECS-SSSEEEECTTHHH
T ss_pred HHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcC-CCCcEEcCHHHHH
Confidence 5777777644446788999999999999999999999999997543 2357999876433
No 229
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=85.40 E-value=1.2 Score=37.51 Aligned_cols=62 Identities=8% Similarity=0.015 Sum_probs=43.3
Q ss_pred HHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccC-CcEEEEeee----eEEEEeChhHHHHhhc
Q 018851 4 EAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGF-RYIDAQDIK----RETWVLTGEGKKYAAE 68 (349)
Q Consensus 4 ~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~k-gli~~~~~~----~~~~~LTeEG~~~l~~ 68 (349)
.+++.++...+. ...-|+.+|+++..|.+.++.||.. |.-=++... ...+.||++|+.++..
T Consensus 29 L~~f~av~e~gS---~s~AA~~L~iSqsavS~~I~~LE~~lG~~Lf~R~~~G~~grg~~LT~~G~~ll~~ 95 (135)
T 2ijl_A 29 VELMQLIAETGS---ISAAGRAMDMSYRRAWLLVDALNHMFRQPVICSQRGGKQGGGAALTVFGAELLER 95 (135)
T ss_dssp HHHHHHHHHHSC---HHHHHHHTTCCHHHHHHHHHHHHHHBSSCSEEECCC------EEECHHHHHHHHH
T ss_pred HHHHHHHHHhCC---HHHHHHHHCcCHHHHHHHHHHHHHHHCCeeEEecCCCCCCCceeECHHHHHHHHH
Confidence 345666666653 4467889999999999999999995 433233322 2579999999998744
No 230
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=85.33 E-value=1.4 Score=41.99 Aligned_cols=58 Identities=16% Similarity=0.091 Sum_probs=45.0
Q ss_pred HHHHHHHHHhh-CCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeCh
Q 018851 2 AEEAILGYLEK-NEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTG 60 (349)
Q Consensus 2 ~e~~iL~~L~~-~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTe 60 (349)
...+||+.|.. .+...+.++||+.+|++..+|...++.|++.|++.... ...-|.|.+
T Consensus 4 ~~~~iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~~~G~~i~~~-~~~GY~L~~ 62 (323)
T 3rkx_A 4 YSQDVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQLKLEGCKIDSV-NHKGHLLQQ 62 (323)
T ss_dssp HHHHHHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEEE-TTTEEEEEE
T ss_pred HHHHHHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHHHHHHhcCCeEEEe-CCCeEEEec
Confidence 46789999964 34447889999999999999999999999999954432 234666654
No 231
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=84.82 E-value=0.92 Score=37.39 Aligned_cols=39 Identities=21% Similarity=0.143 Sum_probs=34.3
Q ss_pred ChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEE
Q 018851 18 DSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETW 56 (349)
Q Consensus 18 ~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~ 56 (349)
+..+||+.+|++...|..|+..|++.|+|......-.++
T Consensus 40 ser~La~~~gVSr~tVReAl~~L~~eGlv~~~~g~G~~V 78 (134)
T 4ham_A 40 SIREFASRIGVNPNTVSKAYQELERQEVIITVKGKGTFI 78 (134)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEE
T ss_pred cHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEcCcEEEE
Confidence 556899999999999999999999999999887765544
No 232
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=84.16 E-value=0.58 Score=45.57 Aligned_cols=39 Identities=8% Similarity=0.094 Sum_probs=27.1
Q ss_pred hccccCCCCchhHHHHHHHhh-cCCCCCceEEecCceecC
Q 018851 311 NKNLLRTHTTAVSSRMLKALA-EKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 311 ~~~vLRTHTTavs~r~L~~l~-~~~~~p~k~fsi~rVfR~ 349 (349)
+...||.=+|+.-++++...- +....|.|++.+++|||.
T Consensus 84 ~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~ 123 (401)
T 1evl_A 84 REYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRN 123 (401)
T ss_dssp EEEEECSCSHHHHHHHHTSSCCBGGGCSEEEEEEEEEECC
T ss_pred ceEEEcCCCCHHHHHHHHhhhhhhhhCChhhccccceecC
Confidence 367899766666677764321 112359999999999995
No 233
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=83.96 E-value=1.4 Score=38.38 Aligned_cols=59 Identities=10% Similarity=0.007 Sum_probs=47.9
Q ss_pred HHHHHHHhhCCCCCChHHHHHHhC-CCHHHHHHHHHHhccCCcEEEEeee------eEEEEeChhHHH
Q 018851 4 EAILGYLEKNEQISDSGNFAAERG-FDHNDVVNVIKSLHGFRYIDAQDIK------RETWVLTGEGKK 64 (349)
Q Consensus 4 ~~iL~~L~~~~~~~~~~~la~~~g-~~~~~v~~~~~~L~~kgli~~~~~~------~~~~~LTeEG~~ 64 (349)
.+||..|...+ .+.-++++.+| ++...|..=++.|+..|||++.... ...|.++.++-.
T Consensus 26 l~il~~L~~~~--~~~~~l~~~l~~~~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~~~~ 91 (182)
T 4g6q_A 26 WRITQLLIGRS--LTTRELAELLPDVATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQAGD 91 (182)
T ss_dssp HHHHHHTTTSC--EEHHHHHHHCTTBCHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTTTTT
T ss_pred HHHHHHHHhCC--CCHHHHHHHhcCCCHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEecccccc
Confidence 56888886543 46779999986 8999999999999999999886653 468999998754
No 234
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=83.94 E-value=0.32 Score=38.14 Aligned_cols=35 Identities=11% Similarity=0.170 Sum_probs=31.4
Q ss_pred ChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeee
Q 018851 18 DSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIK 52 (349)
Q Consensus 18 ~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~ 52 (349)
+..+||+.+|++...|..++..|++.|+|......
T Consensus 37 s~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~~g~ 71 (102)
T 1v4r_A 37 SVADIRAQFGVAAKTVSRALAVLKSEGLVSSRGAL 71 (102)
T ss_dssp CHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEETTT
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCC
Confidence 67899999999999999999999999999776543
No 235
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=83.94 E-value=0.96 Score=37.97 Aligned_cols=59 Identities=12% Similarity=0.083 Sum_probs=46.8
Q ss_pred HHHHHHHhhC--CCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhH
Q 018851 4 EAILGYLEKN--EQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEG 62 (349)
Q Consensus 4 ~~iL~~L~~~--~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG 62 (349)
..+|..|... +...++.++|+.+|+++..|...+..|...|+|....-..--|.|+..-
T Consensus 14 l~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p 74 (143)
T 3t8r_A 14 LTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQLRVPA 74 (143)
T ss_dssp HHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECSSSSSEEEESSCG
T ss_pred HHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEecCCCCCCeeecCCc
Confidence 3567777643 2356789999999999999999999999999999876666667776544
No 236
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=83.86 E-value=1.1 Score=35.86 Aligned_cols=36 Identities=14% Similarity=0.041 Sum_probs=32.0
Q ss_pred ChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeee
Q 018851 18 DSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKR 53 (349)
Q Consensus 18 ~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~ 53 (349)
+..+||+.+|++...|..|+..|++.|+|......-
T Consensus 35 s~~~La~~~~vSr~tvr~al~~L~~~Gli~~~~~~G 70 (113)
T 3tqn_A 35 SIRKISTEYQINPLTVSKAYQSLLDDNVIEKRRGLG 70 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCCe
Confidence 567899999999999999999999999998766544
No 237
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=83.75 E-value=1.1 Score=42.15 Aligned_cols=68 Identities=15% Similarity=0.182 Sum_probs=51.1
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCC---HHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHHHhhcCCh
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFD---HNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAAEGSP 71 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~---~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~l~~G~P 71 (349)
+..|+..|...+...+.++||+.+|++ +..+.+.+.-|.+.|+++........|.+|+.++ ++..+.|
T Consensus 38 ~lgif~~L~~~~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~y~~t~~s~-~L~~~~~ 108 (352)
T 1fp2_A 38 EMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITKEEESYALTVASE-LLVRGSD 108 (352)
T ss_dssp HTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEESSSEEEEECHHHH-TTSTTSS
T ss_pred HCChhhhhhhcCCCccHHHHHHHhCcCCCChHHHHHHHHHHHhCCeEEEecCCCCeEeCCHHHH-HHhCCCC
Confidence 445677776643236789999999994 6779999999999999986521246899999997 5555555
No 238
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=83.75 E-value=1.6 Score=36.76 Aligned_cols=56 Identities=9% Similarity=0.159 Sum_probs=44.6
Q ss_pred HHHHHHHhhCCCCCChHHHHHHh-----CCCHHHHHHHHHHhccCCcEEEEee--eeEEEEeC
Q 018851 4 EAILGYLEKNEQISDSGNFAAER-----GFDHNDVVNVIKSLHGFRYIDAQDI--KRETWVLT 59 (349)
Q Consensus 4 ~~iL~~L~~~~~~~~~~~la~~~-----g~~~~~v~~~~~~L~~kgli~~~~~--~~~~~~LT 59 (349)
..||.+|...+...+.+++.+.+ +++...|.+.+..|++.|+|..-.. ....|.+.
T Consensus 30 ~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~ 92 (150)
T 2xig_A 30 EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVLETSKSGRRYEIA 92 (150)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEETTTEEEEEES
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEEEeCCCceEEEec
Confidence 46899998765557888988776 7999999999999999999976544 34567764
No 239
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=83.44 E-value=1.1 Score=41.66 Aligned_cols=63 Identities=10% Similarity=0.183 Sum_probs=51.8
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHHHhhcC
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAAEG 69 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~l~~G 69 (349)
+..|...|.+ +. .+.++||+.+|+++..+.+.+.-|.+.|++.... ...|.+|+.++.+...+
T Consensus 27 ~lglf~~l~~-g~-~t~~elA~~~~~~~~~l~rlLr~l~~~gl~~~~~--~~~y~~t~~s~~l~~~~ 89 (332)
T 3i53_A 27 TLRVADHIAA-GH-RTAAEIASAAGAHADSLDRLLRHLVAVGLFTRDG--QGVYGLTEFGEQLRDDH 89 (332)
T ss_dssp HHTHHHHHHT-TC-CBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECT--TSBEEECTTGGGGSTTC
T ss_pred HcChHHHHhc-CC-CCHHHHHHHHCcCHHHHHHHHHHHHhCCcEEecC--CCeEEcCHhHHHHhcCC
Confidence 5567788864 33 6889999999999999999999999999998542 45799999999876554
No 240
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=83.36 E-value=1.4 Score=44.87 Aligned_cols=91 Identities=10% Similarity=0.054 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhhCCceecCCCCceeeeehhhhccCCCCCCCCCCCCCeeeecCCCCCCCCCHHHHHHHHHHhhcCCCC
Q 018851 218 LLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHESGGYG 297 (349)
Q Consensus 218 l~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDaLf~PqdHPARd~~DTFyl~~p~~~~~~p~~~~erVk~vHe~Gg~g 297 (349)
...+++.+++.+...||+||.+ |.+... +.+..=-++|.=.-.|.|.+.+..
T Consensus 222 ~~aL~~~~~d~~~~~Gy~eV~~-P~lv~~----~l~~~sG~~~~f~e~emf~v~~~~----------------------- 273 (501)
T 1wle_A 222 QHGLVNFTLNKLIHRGFTPMTV-PDLLRG----VVFEGCGMTPNAKPSQIYNIDPSR----------------------- 273 (501)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEC-CSEECH----HHHHHHTCCSSSSSCSSCBBCTTT-----------------------
T ss_pred HHHHHHHHHHHHHHcCCEEEeC-CccccH----HHHHhhcCCCccCccccEEEecCC-----------------------
Confidence 5667788888999999999975 555432 222211123321222667775310
Q ss_pred CCCcccccchhhhhccccCCCCchhHHHHHHHhh--cCCCCCceEEecCceecC
Q 018851 298 SRGYGYEWKREEANKNLLRTHTTAVSSRMLKALA--EKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 298 S~Gw~Y~W~~~~a~~~vLRTHTTavs~r~L~~l~--~~~~~p~k~fsi~rVfR~ 349 (349)
.....||. |+++..-.|+.-. +...-|.+++.++.|||+
T Consensus 274 ------------~~~l~L~P-TaE~~~~~l~~~~i~s~~~LPlrl~~~s~~FR~ 314 (501)
T 1wle_A 274 ------------FEDLNLAG-TAEVGLAGYFMDHSVAFRDLPIRMVCSSTCYRA 314 (501)
T ss_dssp ------------SSSCEECS-SHHHHHHHHHTTEEEEGGGCSEEEEEEEEEECC
T ss_pred ------------CCeEEECC-cCcHHHHHHHhhccCCcccCCeeEEeccCcccC
Confidence 01467886 5555554444211 112369999999999995
No 241
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=83.36 E-value=1.3 Score=36.56 Aligned_cols=56 Identities=13% Similarity=0.165 Sum_probs=44.2
Q ss_pred HHHHHHHhhCC-CCCChHHHHHHh-----CCCHHHHHHHHHHhccCCcEEEEee--eeEEEEeC
Q 018851 4 EAILGYLEKNE-QISDSGNFAAER-----GFDHNDVVNVIKSLHGFRYIDAQDI--KRETWVLT 59 (349)
Q Consensus 4 ~~iL~~L~~~~-~~~~~~~la~~~-----g~~~~~v~~~~~~L~~kgli~~~~~--~~~~~~LT 59 (349)
..||..|...+ ...+.+++.+.+ +++...|.+.+..|++.|+|..-.. ....|.++
T Consensus 21 ~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~ 84 (136)
T 1mzb_A 21 VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHNFDGGHAVFELA 84 (136)
T ss_dssp HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEECSSSSSCEEEES
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEEeC
Confidence 56899998655 557889988776 8999999999999999999976553 33467774
No 242
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=83.33 E-value=16 Score=29.34 Aligned_cols=112 Identities=8% Similarity=0.120 Sum_probs=74.8
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCC-cEEEEeeeeEEEEeChhHHHHhhcCChHHHHHHhcC-
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFR-YIDAQDIKRETWVLTGEGKKYAAEGSPEVQLFLAVP- 80 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kg-li~~~~~~~~~~~LTeEG~~~l~~G~PE~rl~~~l~- 80 (349)
+..|...|...+....+.+++..+|++...+..++..|.+.+ ++.+.. ....+.++.+--+-+. .++...|.
T Consensus 4 ~~~l~~~L~~~~~~~~~~~l~~~~~l~~~~l~~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~~~l~-----~~l~~~L~~ 77 (135)
T 2v9v_A 4 EKILAQIIQEHREGLDWQEAATRASLSLEETRKLLQSMAAAGQVTLLRV-ENDLYAISTERYQAWW-----QAVTRALEE 77 (135)
T ss_dssp HHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTCEEEEEE-TTEEEEEEHHHHHHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHcCcCCCHHHHHHHhCCCHHHHHHHHHHHHhCCcEEEEec-CCCeEEecHHHHHHHH-----HHHHHHHHH
Confidence 344556666555433348999999999999999999998865 444433 1223246666555553 36666664
Q ss_pred ------cCCCCCHHHHHhhc----CchhhhhHHHHHhhCCcEeeCceeee
Q 018851 81 ------AEGSISKDELQKKL----DPAVFKIGCSQAGKNKWVEMGKQVSR 120 (349)
Q Consensus 81 ------~~g~~~~~el~~~~----~~~~~~ig~g~~~k~~wi~i~~~i~~ 120 (349)
...+++.++|+..+ +...+..-+..+.+.|.|..+++.+.
T Consensus 78 yH~~~P~~~G~~keeLr~~~~~~~~~~~~~~ll~~l~~~g~l~~~~~~v~ 127 (135)
T 2v9v_A 78 FHSRYPLRPGLAREELRSRYFSRLPARVYQALLEEWSREGRLQLAANTVA 127 (135)
T ss_dssp HHHHCTTSSCEEHHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEECSSEEE
T ss_pred HHHhCCCccCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCEEecCCEEE
Confidence 22348889998753 34455667788999999999988443
No 243
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=83.32 E-value=1.6 Score=40.96 Aligned_cols=64 Identities=14% Similarity=0.220 Sum_probs=50.7
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHHHhhcCCh
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAAEGSP 71 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~l~~G~P 71 (349)
+..|+..|.. +. .+..+||+.+|+++..+.+.+.-|.+.|++.... ...|.+|+.++ ++..+.|
T Consensus 41 ~l~i~~~l~~-~~-~t~~ela~~~~~~~~~l~r~L~~L~~~g~~~~~~--~g~y~~t~~s~-~l~~~~~ 104 (360)
T 1tw3_A 41 TLRLVDHILA-GA-RTVKALAARTDTRPEALLRLIRHLVAIGLLEEDA--PGEFVPTEVGE-LLADDHP 104 (360)
T ss_dssp HTTHHHHHHT-TC-CBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE--TTEEEECTTGG-GGSTTST
T ss_pred HhCHHHHHhC-CC-CCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEecC--CCeEEeCHHHH-HHhcCCc
Confidence 4457777753 43 6789999999999999999999999999998743 34799999985 5555555
No 244
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=83.26 E-value=2.4 Score=32.64 Aligned_cols=54 Identities=13% Similarity=0.042 Sum_probs=44.5
Q ss_pred HHHHHHhhCCCCCChHHHHHHhCC-CHHHHHHHHHHhccCCcEEEEeeeeE-EEEeC
Q 018851 5 AILGYLEKNEQISDSGNFAAERGF-DHNDVVNVIKSLHGFRYIDAQDIKRE-TWVLT 59 (349)
Q Consensus 5 ~iL~~L~~~~~~~~~~~la~~~g~-~~~~v~~~~~~L~~kgli~~~~~~~~-~~~LT 59 (349)
.|-.+|.+.+. .+..++++..|+ +..++..|+.||.-.+=|.+++...+ .++|+
T Consensus 14 ~VW~~L~~~~~-~s~~el~k~t~l~~d~el~lAiGWLaREdKI~~~~~~~~l~v~l~ 69 (77)
T 2l01_A 14 QIWEALNGTEG-LTQKQIKKATKLKADKDFFLGLGWLLREDKVVTSEVEGEIFVKLV 69 (77)
T ss_dssp HHHHHHTTSSC-EEHHHHHHHHTCSCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEC
T ss_pred HHHHHHhcCCC-CCHHHHHHHHCCCCHHHHHHHHHHHhhcCceEEEeeCCEEEEEee
Confidence 46678877654 678899999999 99999999999999999999887666 44554
No 245
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=83.16 E-value=1.5 Score=40.79 Aligned_cols=63 Identities=14% Similarity=0.224 Sum_probs=50.2
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHHHhhcCCh
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAAEGSP 71 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~l~~G~P 71 (349)
+..|+..|.. +. .+.++||+.+|+++..+.+.+.-|.+.|++.... ...|.+|+.++.++ +.|
T Consensus 30 ~lgi~~~l~~-~~-~t~~ela~~~~~~~~~l~r~Lr~L~~~g~l~~~~--~~~y~~t~~s~~l~--~~~ 92 (334)
T 2ip2_A 30 RLGLADLIES-GI-DSDETLAAAVGSDAERIHRLMRLLVAFEIFQGDT--RDGYANTPTSHLLR--DVE 92 (334)
T ss_dssp HTTHHHHHHT-TC-CSHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET--TTEEEECHHHHTTS--SST
T ss_pred HcCcHHHHhC-CC-CCHHHHHHHhCcCHHHHHHHHHHHHhCCceEecC--CCeEecCHHHHHHh--CCC
Confidence 4456777754 33 6889999999999999999999999999997642 35899999997544 554
No 246
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=83.05 E-value=0.99 Score=35.19 Aligned_cols=43 Identities=19% Similarity=0.248 Sum_probs=35.3
Q ss_pred HHHHhcCcCCCCCHHHHHhh--cCchhhhhHHHHHhhCCcEeeCc
Q 018851 74 QLFLAVPAEGSISKDELQKK--LDPAVFKIGCSQAGKNKWVEMGK 116 (349)
Q Consensus 74 rl~~~l~~~g~~~~~el~~~--~~~~~~~ig~g~~~k~~wi~i~~ 116 (349)
+|+.+|.+.+..++.+|.+. +...+...||||++|.+=|.++.
T Consensus 12 ~VW~~L~~~~~~s~~el~k~t~l~d~el~lAIGWLaREdKI~~~~ 56 (82)
T 2l02_A 12 KVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVIER 56 (82)
T ss_dssp HHHHHHHHCCSBCHHHHHHHHTCCHHHHHHHHHHHHTTTSEEEEE
T ss_pred HHHHHHhccCCCCHHHHHHHhCCCHHHHHHHHHHHhccCceeEEe
Confidence 57888887777899999887 45567788999999999887754
No 247
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=82.92 E-value=1.2 Score=37.84 Aligned_cols=54 Identities=15% Similarity=0.099 Sum_probs=40.4
Q ss_pred CChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHHHhhcCChH
Q 018851 17 SDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAAEGSPE 72 (349)
Q Consensus 17 ~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~l~~G~PE 72 (349)
.+-.++|+.+|++.+.|.++++.|+..|+|+..... ...+-.++.+-+..+.||
T Consensus 140 ~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~--i~i~d~~~L~~~~~~~~e 193 (195)
T 3b02_A 140 VSHEEIADATASIRESVSKVLADLRREGLIATAYRR--VYLLDLAALEREAGSALE 193 (195)
T ss_dssp CCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEEETTE--EEECCHHHHHHHHCSCCC
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCE--EEEeCHHHHHHHhccccc
Confidence 356889999999999999999999999999887532 444455555544444444
No 248
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=82.91 E-value=2.2 Score=36.65 Aligned_cols=58 Identities=16% Similarity=0.188 Sum_probs=46.4
Q ss_pred HHHHHHhhC--CCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhH
Q 018851 5 AILGYLEKN--EQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEG 62 (349)
Q Consensus 5 ~iL~~L~~~--~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG 62 (349)
++|..|+.. +...++.++|+..|+++..+.+.+..|...|+|....-..--|.|+..-
T Consensus 31 r~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p 90 (159)
T 3lwf_A 31 TITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDP 90 (159)
T ss_dssp HHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEEEECSCT
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCCCceEecCCH
Confidence 456666642 3457889999999999999999999999999999887666667776543
No 249
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=82.58 E-value=2.3 Score=33.73 Aligned_cols=47 Identities=13% Similarity=0.110 Sum_probs=38.2
Q ss_pred ChHHHHHHhcCcCCCCCHHHHHhhcC------chhhhhHHHHHhhCCcEeeCc
Q 018851 70 SPEVQLFLAVPAEGSISKDELQKKLD------PAVFKIGCSQAGKNKWVEMGK 116 (349)
Q Consensus 70 ~PE~rl~~~l~~~g~~~~~el~~~~~------~~~~~ig~g~~~k~~wi~i~~ 116 (349)
.+|+.++.+|-..+++++.||.+.++ ++...--+..+-++|||....
T Consensus 10 ~~q~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 10 MAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp HHHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEe
Confidence 46889999997767799999998763 556777889999999997644
No 250
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=82.23 E-value=11 Score=32.67 Aligned_cols=102 Identities=10% Similarity=0.106 Sum_probs=74.9
Q ss_pred CCCCCChHHHHHHhC--CCHHHHHHHHHHhc------cCCcEEEEeeeeEEEEeChhHHHHhhc--CCh-HHH-------
Q 018851 13 NEQISDSGNFAAERG--FDHNDVVNVIKSLH------GFRYIDAQDIKRETWVLTGEGKKYAAE--GSP-EVQ------- 74 (349)
Q Consensus 13 ~~~~~~~~~la~~~g--~~~~~v~~~~~~L~------~kgli~~~~~~~~~~~LTeEG~~~l~~--G~P-E~r------- 74 (349)
.+++.+.++||+.++ ++..+|..++..|. ..|+--++....-.+..-++=..|++. ..| ..+
T Consensus 19 ~~~pvs~~~La~~~~~~~~~~~v~~~l~~L~~~y~~~~rg~~l~~v~~gy~l~t~~~~~~~v~~~~~~~~~~~LS~aaLE 98 (162)
T 1t6s_A 19 SEEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRIHAIAGGYRFLTEPEFADLVRQLLAPVIQRRLSRSMLE 98 (162)
T ss_dssp CSSCBCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTCSEEEEEETTEEEEEECGGGHHHHHHHHSCHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHhCcCCCHHHHHHHHHHHHHHhhhCCCCEEEEEECCEEEEEEcHHHHHHHHHHhcccccCccCHHHHH
Confidence 355588999999999 99999999999886 457666666666677777777777665 333 223
Q ss_pred HHHhcCcCCCCCHHHHHhhcCchhhhhHHHHHhhCCcEeeC
Q 018851 75 LFLAVPAEGSISKDELQKKLDPAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 75 l~~~l~~~g~~~~~el~~~~~~~~~~ig~g~~~k~~wi~i~ 115 (349)
++..|.-.+|++..||.+..|-+ ..--+..++..|||...
T Consensus 99 tLaiIay~qPiTR~eI~~irGv~-~~~~v~~L~e~glI~e~ 138 (162)
T 1t6s_A 99 VLAVVAWHQPVTKGEIQQIRGAS-PDYSIDRLLARGLIEVR 138 (162)
T ss_dssp HHHHHHHHCSEEHHHHHHHHTCC-CCSHHHHHHHTTSEEEE
T ss_pred HHHHHHHcCCcCHHHHHHHHCCC-HHHHHHHHHHCCCEEEc
Confidence 45555545789999999876655 44478999999999863
No 251
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=81.96 E-value=1.5 Score=35.81 Aligned_cols=42 Identities=14% Similarity=0.077 Sum_probs=35.9
Q ss_pred CChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEe
Q 018851 17 SDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVL 58 (349)
Q Consensus 17 ~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~L 58 (349)
.+..+||+.+|++...|..|+..|++.|+|......-.++.-
T Consensus 38 ps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G~~V~~ 79 (125)
T 3neu_A 38 PSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTS 79 (125)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCEEEEec
Confidence 357889999999999999999999999999988776555443
No 252
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=81.94 E-value=1.3 Score=42.23 Aligned_cols=68 Identities=12% Similarity=0.173 Sum_probs=51.2
Q ss_pred HHHHHHHHhhCCCC---CChHHHHHHhCC------CHHHHHHHHHHhccCCcEEEEee----e--eEEEEeChhHHHHhh
Q 018851 3 EEAILGYLEKNEQI---SDSGNFAAERGF------DHNDVVNVIKSLHGFRYIDAQDI----K--RETWVLTGEGKKYAA 67 (349)
Q Consensus 3 e~~iL~~L~~~~~~---~~~~~la~~~g~------~~~~v~~~~~~L~~kgli~~~~~----~--~~~~~LTeEG~~~l~ 67 (349)
+..|+..|...+.. .+.++||+.+|+ ++..+.+.+.-|.+.|+++.... - ...|.+|+.++ ++.
T Consensus 46 ~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~-~L~ 124 (372)
T 1fp1_D 46 DLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGK-YLV 124 (372)
T ss_dssp HTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTGG-GGS
T ss_pred HCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCCceEecccccCCCCcCCeEecCHHHH-HHh
Confidence 44567777754312 578999999999 67779999999999999987521 1 46899999987 565
Q ss_pred cCCh
Q 018851 68 EGSP 71 (349)
Q Consensus 68 ~G~P 71 (349)
.+.|
T Consensus 125 ~~~~ 128 (372)
T 1fp1_D 125 PDES 128 (372)
T ss_dssp TTCT
T ss_pred CCCC
Confidence 5555
No 253
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=81.93 E-value=1.5 Score=41.56 Aligned_cols=57 Identities=11% Similarity=0.136 Sum_probs=45.3
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChh
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGE 61 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeE 61 (349)
..+||..|...+. .+..+||+.+|++..+|.+.++.|++.|++....... -|.|.+.
T Consensus 7 ~~~Il~~L~~~~~-~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~i~~~~g~-GY~l~~~ 63 (321)
T 1bia_A 7 PLKLIALLANGEF-HSGEQLGETLGMSRAAINKHIQTLRDWGVDVFTVPGK-GYSLPEP 63 (321)
T ss_dssp HHHHHHHHTTSSC-BCHHHHHHHHTSCHHHHHHHHHHHHHTTCCCEEETTT-EEECSSC
T ss_pred HHHHHHHHHcCCC-cCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEEecCC-CcEEeec
Confidence 4679999976554 6889999999999999999999999999986544333 6766543
No 254
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=81.77 E-value=0.29 Score=41.58 Aligned_cols=46 Identities=17% Similarity=0.349 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEE
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDA 48 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~ 48 (349)
+...||..|..++.+ +..+||+.+|++...|..++..|++.|+|..
T Consensus 14 l~~~Il~~l~~~~~l-s~~eLa~~lgvSr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 14 IDRNILNELQKDGRI-SNVELSKRVGLSPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp HHHHHHHHHHHCSSC-CTTGGGTSSSCCTTTSSSTHHHHHHHTSEEE
T ss_pred HHHHHHHHHHhCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 567899988877764 6779999999999999999999999999985
No 255
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=81.57 E-value=1.8 Score=43.77 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhhCCceecCCCCceee
Q 018851 220 KVRKQLKDIFLQMGFEEMPTNNFVES 245 (349)
Q Consensus 220 ~~~~~ir~if~~mGF~e~~~~~~Ves 245 (349)
.++..||++|.+.||.|+.| |.++.
T Consensus 183 ~i~~~ir~~~~~~gF~EV~T-Pil~~ 207 (487)
T 1eov_A 183 GVCELFREYLATKKFTEVHT-PKLLG 207 (487)
T ss_dssp HHHHHHHHHHHHTTCEECCC-CSEES
T ss_pred HHHHHHHHHHHhCCcEEEeC-CEEEE
Confidence 45666799999999999986 77765
No 256
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=81.41 E-value=1 Score=42.49 Aligned_cols=60 Identities=17% Similarity=0.226 Sum_probs=48.3
Q ss_pred HHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHHHhhc
Q 018851 4 EAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAAE 68 (349)
Q Consensus 4 ~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~l~~ 68 (349)
..|...|.+ + ..+.++||+.+|+++..+.+.+.-|.+.|+++. ....|.+|+.++.++.+
T Consensus 45 lglf~~l~~-g-~~t~~elA~~~g~~~~~l~rlLr~l~~~g~l~~---~~~~y~~t~~s~~l~~~ 104 (348)
T 3lst_A 45 VGVADHLVD-G-PRTPAELAAATGTDADALRRVLRLLAVRDVVRE---SDGRFALTDKGAALRSD 104 (348)
T ss_dssp HTGGGGGTT-S-CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE---ETTEEEECTTTGGGSTT
T ss_pred cCchhHhhC-C-CCCHHHHHHHhCcCHHHHHHHHHHHHhCCCEEe---cCCEEecCHHHHHHhcC
Confidence 344555543 3 368899999999999999999999999999986 45689999999876543
No 257
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=80.58 E-value=1.9 Score=43.81 Aligned_cols=26 Identities=19% Similarity=0.417 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhhCCceecCCCCceeee
Q 018851 220 KVRKQLKDIFLQMGFEEMPTNNFVESS 246 (349)
Q Consensus 220 ~~~~~ir~if~~mGF~e~~~~~~Ves~ 246 (349)
+++..||++|.+.||.|+.| |.+.+.
T Consensus 188 ~i~~~iR~f~~~~gFlEVeT-PiL~~~ 213 (504)
T 1e1o_A 188 KILAAIRQFMVARGFMEVET-PMMQVI 213 (504)
T ss_dssp HHHHHHHHHHHTTTCEECCC-CSEESS
T ss_pred HHHHHHHHHHHHCCCEEEEC-CeEEec
Confidence 56778999999999999986 777654
No 258
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=80.46 E-value=1.4 Score=33.96 Aligned_cols=44 Identities=16% Similarity=0.213 Sum_probs=35.4
Q ss_pred HHHHHhcCcCCCCCHHHHHhh--c-CchhhhhHHHHHhhCCcEeeCc
Q 018851 73 VQLFLAVPAEGSISKDELQKK--L-DPAVFKIGCSQAGKNKWVEMGK 116 (349)
Q Consensus 73 ~rl~~~l~~~g~~~~~el~~~--~-~~~~~~ig~g~~~k~~wi~i~~ 116 (349)
-.|+.+|.+.+..++.+|.+. + ...+...||||++|.+=|.++.
T Consensus 13 G~VW~~L~~~~~~s~~el~k~t~l~~d~el~lAiGWLaREdKI~~~~ 59 (77)
T 2l01_A 13 GQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVTSE 59 (77)
T ss_dssp HHHHHHHTTSSCEEHHHHHHHHTCSCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHHhhcCceEEEe
Confidence 367889987777899999887 4 4557778999999999887754
No 259
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=80.08 E-value=1.7 Score=36.25 Aligned_cols=57 Identities=12% Similarity=0.126 Sum_probs=44.5
Q ss_pred HHHHHHHhhCCCCCChHHHHHHh-----CCCHHHHHHHHHHhccCCcEEEEee--eeEEEEeCh
Q 018851 4 EAILGYLEKNEQISDSGNFAAER-----GFDHNDVVNVIKSLHGFRYIDAQDI--KRETWVLTG 60 (349)
Q Consensus 4 ~~iL~~L~~~~~~~~~~~la~~~-----g~~~~~v~~~~~~L~~kgli~~~~~--~~~~~~LTe 60 (349)
..||.+|.+.+...+.+++.+.+ +++...|.+.+..|.+.|+|..-.. ....|.+..
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y~~~~ 80 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTAEGESVYRRCS 80 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECTTSCEEEECCS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcCCCceEEEECC
Confidence 56899998765557788887765 7899999999999999999976543 245777754
No 260
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=79.65 E-value=1.1 Score=38.51 Aligned_cols=59 Identities=17% Similarity=0.182 Sum_probs=47.5
Q ss_pred HHHHHHhhC-CCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHH
Q 018851 5 AILGYLEKN-EQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGK 63 (349)
Q Consensus 5 ~iL~~L~~~-~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~ 63 (349)
.+|..|... +...++.++|+.+|+++..|...+..|...|||....-..--|.|+..-.
T Consensus 16 r~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p~ 75 (162)
T 3k69_A 16 HSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTVGKNGGYQLDLALA 75 (162)
T ss_dssp HHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEECSTTCEEECCSCGG
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCeEecCChh
Confidence 567777643 44578899999999999999999999999999987766655788876543
No 261
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=79.41 E-value=2.8 Score=40.82 Aligned_cols=47 Identities=6% Similarity=0.169 Sum_probs=41.2
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEe
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQD 50 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~ 50 (349)
+.+||..|...+. .+..+||+.+|++..+|...+..|.+.|+|....
T Consensus 41 ~~~il~~l~~~~~-~sr~ela~~~gls~~tv~~~v~~L~~~gli~~~~ 87 (429)
T 1z05_A 41 AGRVYKLIDQKGP-ISRIDLSKESELAPASITKITRELIDAHLIHETT 87 (429)
T ss_dssp HHHHHHHHHHHCS-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHcCC-cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 3568999988776 6778999999999999999999999999997654
No 262
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=79.35 E-value=1.6 Score=35.74 Aligned_cols=40 Identities=18% Similarity=0.099 Sum_probs=34.6
Q ss_pred ChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEE
Q 018851 18 DSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWV 57 (349)
Q Consensus 18 ~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~ 57 (349)
+..+||+.+|++...|..|+..|++.|+|......-.++.
T Consensus 37 se~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g~G~~V~ 76 (126)
T 3by6_A 37 SVRETALQEKINPNTVAKAYKELEAQKVIRTIPGKGTFIT 76 (126)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEEC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCCeEEEc
Confidence 6789999999999999999999999999988776554443
No 263
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=79.32 E-value=1.5 Score=41.26 Aligned_cols=66 Identities=12% Similarity=0.155 Sum_probs=49.8
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHHHhhcCCh
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAAEGSP 71 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~l~~G~P 71 (349)
+..|+..|.. +. .+.++||+.+|+++..+.+.+.-|.+.|++.........|.+|+.++ ++..+.|
T Consensus 38 ~l~i~~~l~~-~~-~t~~eLA~~~g~~~~~l~r~Lr~L~~~Gll~~~~~~~~~y~~t~~s~-~l~~~~~ 103 (374)
T 1qzz_A 38 TLRLVDHLLA-GA-DTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGEKQGRPLRPTRLGM-LLADGHP 103 (374)
T ss_dssp HTTHHHHHHT-TC-CSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECCCC-CCCCEECTTGG-GGSTTCT
T ss_pred HcChHHHHhC-CC-CCHHHHHHHhCcCHHHHHHHHHHHhhCCCEEEeCCCCeEEEEChHHH-hhcCCCc
Confidence 4457777753 43 68899999999999999999999999999976322112799999985 4444444
No 264
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=79.32 E-value=2.3 Score=35.05 Aligned_cols=38 Identities=11% Similarity=-0.057 Sum_probs=33.2
Q ss_pred ChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEE
Q 018851 18 DSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRET 55 (349)
Q Consensus 18 ~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~ 55 (349)
+..+||+.+|++...|..|+..|++.|+|......-.+
T Consensus 30 se~~La~~~gvSr~tVr~Al~~L~~~Gli~~~~g~G~~ 67 (129)
T 2ek5_A 30 STNELAAFHRINPATARNGLTLLVEAGILYKKRGIGMF 67 (129)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEETTTEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEecCCEEE
Confidence 66789999999999999999999999999887665433
No 265
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=79.29 E-value=1.8 Score=36.57 Aligned_cols=56 Identities=14% Similarity=0.193 Sum_probs=43.9
Q ss_pred HHHHHHHhhCC-CCCChHHHHHHh-----CCCHHHHHHHHHHhccCCcEEEEee--eeEEEEeC
Q 018851 4 EAILGYLEKNE-QISDSGNFAAER-----GFDHNDVVNVIKSLHGFRYIDAQDI--KRETWVLT 59 (349)
Q Consensus 4 ~~iL~~L~~~~-~~~~~~~la~~~-----g~~~~~v~~~~~~L~~kgli~~~~~--~~~~~~LT 59 (349)
..||..|...+ ...+.+++.+.+ +++...|.+.+..|++.|+|..... ....|.++
T Consensus 20 ~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~ 83 (150)
T 2w57_A 20 LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHHFEGGKSVFELS 83 (150)
T ss_dssp HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEECGGGCEEEEEC
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEEec
Confidence 56899997654 446788887766 8999999999999999999976543 33567774
No 266
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=79.22 E-value=2.4 Score=39.18 Aligned_cols=70 Identities=20% Similarity=0.177 Sum_probs=50.7
Q ss_pred HHHHHHHHhhC-CCCCChHHHHHHhCCCHHHHHHHHH-HhccCCcEEEEeeeeEEEEeChhHHHHhhcCChHHHHH
Q 018851 3 EEAILGYLEKN-EQISDSGNFAAERGFDHNDVVNVIK-SLHGFRYIDAQDIKRETWVLTGEGKKYAAEGSPEVQLF 76 (349)
Q Consensus 3 e~~iL~~L~~~-~~~~~~~~la~~~g~~~~~v~~~~~-~L~~kgli~~~~~~~~~~~LTeEG~~~l~~G~PE~rl~ 76 (349)
|.++|..+... +...+..++|+.+|++...+.+.++ .|...|+|..... -.+.|+.|.+|+..+ |+-.+|
T Consensus 265 e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~gli~~~~~---g~~~t~~~~~~~~~~-~~~~~~ 336 (338)
T 3pfi_A 265 DLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAK---GRIASAKSYSALKLN-YEKTLF 336 (338)
T ss_dssp HHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTHHHHHHTTSEEEETT---EEEECHHHHHHHHHH-TC----
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHcCceecCCC---cccccHHHHHHhccC-Ccchhc
Confidence 45677766653 2234578899999999999999998 8999999976543 467999999999755 334443
No 267
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=79.11 E-value=4.1 Score=42.13 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhhCCceecCCCCcee
Q 018851 220 KVRKQLKDIFLQMGFEEMPTNNFVE 244 (349)
Q Consensus 220 ~~~~~ir~if~~mGF~e~~~~~~Ve 244 (349)
+++..||++|.+.||.|+.| |.+.
T Consensus 143 ~i~~~iR~fl~~~gFlEVeT-PiL~ 166 (585)
T 1c0a_A 143 KITSLVRRFMDDHGFLDIET-PMLT 166 (585)
T ss_dssp HHHHHHHHHHHHTTCEECCC-CSSB
T ss_pred HHHHHHHHHHHhCCcEEEeC-CEEe
Confidence 56788999999999999986 6664
No 268
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=78.96 E-value=3.4 Score=35.02 Aligned_cols=52 Identities=17% Similarity=0.030 Sum_probs=40.3
Q ss_pred CChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHHHhhcCC
Q 018851 17 SDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAAEGS 70 (349)
Q Consensus 17 ~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~l~~G~ 70 (349)
.+-.++|+.+|++.+.|.+.++.|+..|+|+... .....+-.++.+-+.+|+
T Consensus 164 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~--~~i~i~d~~~L~~~a~~l 215 (216)
T 4ev0_A 164 IRHHELAALAGTSRETVSRVLHALAEEGVVRLGP--GTVEVREAALLEEIAFGL 215 (216)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET--TEEEESCHHHHHHHHTTC
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecC--CEEEEeCHHHHHHHhhcc
Confidence 3568899999999999999999999999998754 334555666665555543
No 269
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=78.81 E-value=2.9 Score=38.01 Aligned_cols=52 Identities=8% Similarity=0.091 Sum_probs=40.7
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEE
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETW 56 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~ 56 (349)
..+|.. +.....+-+..+||+.+|++...|..|+..|++.|+|.. ...-..+
T Consensus 24 ~~~I~~-~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~-~g~Gt~V 75 (248)
T 3f8m_A 24 DRMLDG-MRIGDPFPAEREIAEQFEVARETVRQALRELLIDGRVER-RGRTTVV 75 (248)
T ss_dssp HHHHHH-CCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE-ETTEEEE
T ss_pred HHHHhC-CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe-CCCEEEE
Confidence 445554 555555557789999999999999999999999999998 6655443
No 270
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=78.81 E-value=1.3 Score=44.32 Aligned_cols=92 Identities=16% Similarity=0.198 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHH-hhCCceecCCCCceee-eehhhhccCCCCCCCCCCCCCeeeecCCCCCCCCCHHHHHHHHHHhhcCC
Q 018851 218 LLKVRKQLKDIF-LQMGFEEMPTNNFVES-SFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHESGG 295 (349)
Q Consensus 218 l~~~~~~ir~if-~~mGF~e~~~~~~Ves-~fwNFDaLf~PqdHPARd~~DTFyl~~p~~~~~~p~~~~erVk~vHe~Gg 295 (349)
...+.+.+++.| ...||+|+.+ |.++. +.|- . -.|-..-..+.|.+.+..
T Consensus 67 ~~~l~~~~~~~~~~~~Gy~ev~t-P~l~~~~l~~--~----sGh~~~~~~emy~~~d~~--------------------- 118 (460)
T 3uh0_A 67 FNKLIEFMKLQQKFKFGFNEVVT-PLIYKKTLWE--K----SGHWENYADDMFKVETTD--------------------- 118 (460)
T ss_dssp HHHHHHHHHHHHHHTSCCEECCC-CSEEEHHHHH--H----HTCTTTSGGGSCEECC-----------------------
T ss_pred HHHHHHHHHHHHHHhcCCEEEEC-CeeccHHHHH--h----cCCccccccceEEEecCC---------------------
Confidence 466778889999 8999999985 66644 3332 1 133211122345554310
Q ss_pred CCCCCcccccchhhhhccccCCCCchhHHHHHHHhh-cCCCCCceEEecCceecC
Q 018851 296 YGSRGYGYEWKREEANKNLLRTHTTAVSSRMLKALA-EKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 296 ~gS~Gw~Y~W~~~~a~~~vLRTHTTavs~r~L~~l~-~~~~~p~k~fsi~rVfR~ 349 (349)
...+...||.=+|+.-+++....- +....|.|++.++.|||.
T Consensus 119 ------------~~~~~l~LrPt~~~~~~~~~~~~~~s~r~LPlrl~~~g~~fR~ 161 (460)
T 3uh0_A 119 ------------EEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSPLHRN 161 (460)
T ss_dssp ----------------CEEECSCSHHHHHHHHTTSCCBGGGCSEEEEECCEEECC
T ss_pred ------------CCCceEEEcccCcHHHHHHHHhccccccccCeEEEEecCeeeC
Confidence 012368899655555555543210 112359999999999994
No 271
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=78.71 E-value=4.6 Score=32.44 Aligned_cols=46 Identities=11% Similarity=0.189 Sum_probs=37.9
Q ss_pred ChHHHHHHhcCcCCCCCHHHHHhhc--CchhhhhHHHHHhhCCcEeeC
Q 018851 70 SPEVQLFLAVPAEGSISKDELQKKL--DPAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 70 ~PE~rl~~~l~~~g~~~~~el~~~~--~~~~~~ig~g~~~k~~wi~i~ 115 (349)
.++..++..|...+++++.+|.+.+ .++...-.+..+.++|||...
T Consensus 36 ~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~ 83 (140)
T 3hsr_A 36 YTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRT 83 (140)
T ss_dssp HHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEec
Confidence 3588999999877779999999875 456677788999999999864
No 272
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=78.57 E-value=0.52 Score=48.23 Aligned_cols=94 Identities=17% Similarity=0.220 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhhCCceecCCCCceee-eehhhhccCCCCCCCCCCCCCeeeecCCCCCCCCCHHHHHHHHHHhhcCCC
Q 018851 218 LLKVRKQLKDIFLQMGFEEMPTNNFVES-SFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHESGGY 296 (349)
Q Consensus 218 l~~~~~~ir~if~~mGF~e~~~~~~Ves-~fwNFDaLf~PqdHPARd~~DTFyl~~p~~~~~~p~~~~erVk~vHe~Gg~ 296 (349)
...+.+.+++.|...||+++.+ |.+++ +.|. .--.|-.-=..+.|.+.+..
T Consensus 58 ~~~L~~~~~~~~~~~Gy~eV~t-P~l~~~el~~-----k~sgh~~~f~~emy~v~d~g---------------------- 109 (518)
T 3ial_A 58 ENAIMRLCEEEYAKVGISQILF-PTVIPESFLK-----KESDHIKGFEAECFWVEKGG---------------------- 109 (518)
T ss_dssp HHHHHHHHHHHHHHTTCEECBC-CSEEEHHHHT-----SSHHHHHHHGGGCEEEEEET----------------------
T ss_pred HHHHHHHHHHHHHHcCCEEEEc-ccccCHHHHH-----hhcCCcccccccEEEEecCC----------------------
Confidence 4567788888999999999985 66644 3231 00011000011345554310
Q ss_pred CCCCcccccchhhhhccccC-CCCchhHHHHHHHhh-cCCCCCceEEecCceecC
Q 018851 297 GSRGYGYEWKREEANKNLLR-THTTAVSSRMLKALA-EKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 297 gS~Gw~Y~W~~~~a~~~vLR-THTTavs~r~L~~l~-~~~~~p~k~fsi~rVfR~ 349 (349)
+.+..+...|| |||+++ +++....- +....|.|++.++.|||.
T Consensus 110 ---------~~~~~~~l~LrPt~e~~i-~~~~~~~i~SyrdLPlrl~q~~~~fR~ 154 (518)
T 3ial_A 110 ---------LQPLEERLALRPTSETAI-YSMFSKWVRSYKDLPLKIHQTCTIFRH 154 (518)
T ss_dssp ---------TEEEEEEEEECSSSHHHH-HHHHHHHCCBGGGCCEEEEEEEEEECT
T ss_pred ---------CcccCcceeECCCCcHHH-HHHHHhhhcccccCCeEEEEEeceecC
Confidence 00112468999 454444 44443221 113469999999999994
No 273
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=78.53 E-value=2.6 Score=38.47 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=41.7
Q ss_pred HHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhH
Q 018851 4 EAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEG 62 (349)
Q Consensus 4 ~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG 62 (349)
..|+-+|.+ +. .+.+++|..+|+++..|...+..|...|+|+ ......+.+-+|-
T Consensus 168 ~~l~~~l~~-~~-~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~--~~~~~~~~~~~~~ 222 (232)
T 2qlz_A 168 AILHYLLLN-GR-ATVEELSDRLNLKEREVREKISEMARFVPVK--IINDNTVVLDEDQ 222 (232)
T ss_dssp HHHHHHHHS-SE-EEHHHHHHHHTCCHHHHHHHHHHHTTTSCEE--EETTTEEEECHHH
T ss_pred HHHHHHHhc-CC-CCHHHHHHHhCcCHHHHHHHHHHHHhcCCeE--EecCCeEEecHHH
Confidence 445555543 43 6789999999999999999999999999998 3334456666553
No 274
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=78.03 E-value=3.7 Score=42.46 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhhCCceecCCCCcee
Q 018851 219 LKVRKQLKDIFLQMGFEEMPTNNFVE 244 (349)
Q Consensus 219 ~~~~~~ir~if~~mGF~e~~~~~~Ve 244 (349)
.+++..||++|.+.||.|+.| |.+.
T Consensus 148 s~i~~~iR~fl~~~gF~EVeT-PiL~ 172 (580)
T 1l0w_A 148 HRVIKAIWDFLDREGFVQVET-PFLT 172 (580)
T ss_dssp HHHHHHHHHHHHHTTCEECCC-CSSB
T ss_pred HHHHHHHHHHHHhCCcEEEeC-CEEe
Confidence 356788999999999999986 6664
No 275
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=78.03 E-value=1.2 Score=45.65 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhhCCceecCCCCcee
Q 018851 218 LLKVRKQLKDIFLQMGFEEMPTNNFVE 244 (349)
Q Consensus 218 l~~~~~~ir~if~~mGF~e~~~~~~Ve 244 (349)
.+.+++-+++.+...||+||.+ |.+.
T Consensus 278 ~~aL~~~~~~~~~~~Gy~ev~~-P~lv 303 (536)
T 3err_A 278 ELALLRFAMDFMARRGFLPMTL-PSYA 303 (536)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEC-CSEE
T ss_pred HHHHHHHHHHHHHHcCCEEEec-cccc
Confidence 4556677888888899999975 5553
No 276
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=77.96 E-value=1.3 Score=39.50 Aligned_cols=61 Identities=8% Similarity=-0.018 Sum_probs=38.4
Q ss_pred HHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccC-CcEEEEeeeeEEEEeChhHHHHhhc
Q 018851 5 AILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGF-RYIDAQDIKRETWVLTGEGKKYAAE 68 (349)
Q Consensus 5 ~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~k-gli~~~~~~~~~~~LTeEG~~~l~~ 68 (349)
+++.++...+. ...-|+.+++++.+|.+.++.||+. |.-=.+......+.||++|+.++..
T Consensus 10 ~~f~~v~~~~s---~s~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~~ 71 (306)
T 3fzv_A 10 KYFVTTVECGS---VAEASRKLYIAQPSISTAVKGLEESFGVQLFIRHHAQGVSLTPAGARFYRK 71 (306)
T ss_dssp HHHHHHHHSSS---HHHHHHHHTCCC-CHHHHHHHHHHHC-CCCC---------CCHHHHHHHHH
T ss_pred HHHHHHHHhCC---HHHHHHHhCCCchHHHHHHHHHHHHhCCeeEeecCCCCceECHhHHHHHHH
Confidence 44555555653 5577889999999999999999994 5433333235679999999998754
No 277
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=77.82 E-value=2.1 Score=37.44 Aligned_cols=60 Identities=10% Similarity=0.124 Sum_probs=44.5
Q ss_pred HHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccC-CcEEEEeeeeEEEEeChhHHHHhhc
Q 018851 5 AILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGF-RYIDAQDIKRETWVLTGEGKKYAAE 68 (349)
Q Consensus 5 ~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~k-gli~~~~~~~~~~~LTeEG~~~l~~ 68 (349)
+++.++.+.+ +.-.-|+.+++++.+|.+.++.||.. |.-=.+ +....+.||++|+.++..
T Consensus 7 ~~f~~v~~~~---s~t~AA~~L~isq~avS~~i~~LE~~lg~~Lf~-R~~~~~~lT~~G~~l~~~ 67 (291)
T 3szp_A 7 NLFRLVVENG---SYTSTSKKTMIPVATITRRIQALEDSLNLRLLN-RHARKLTLTEAGERFYKD 67 (291)
T ss_dssp HHHHHHHHHS---SHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCEE-EETTEEEECHHHHHHHHH
T ss_pred HHHHHHHhcC---CHHHHHHHhCCCHHHHHHHHHHHHHHhCCceEe-ecCCCcccCHhHHHHHHH
Confidence 4455555555 34567889999999999999999995 543333 345689999999998754
No 278
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=77.75 E-value=1.9 Score=38.48 Aligned_cols=63 Identities=13% Similarity=0.019 Sum_probs=46.2
Q ss_pred HHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccC-CcEEEEeeeeEEEEeChhHHHHhhcCC
Q 018851 4 EAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGF-RYIDAQDIKRETWVLTGEGKKYAAEGS 70 (349)
Q Consensus 4 ~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~k-gli~~~~~~~~~~~LTeEG~~~l~~G~ 70 (349)
.+++.++.+.+. ...-|+.+++++.+|.+.++.||.. |.-=.+ +....+.||++|+.++..-.
T Consensus 15 L~~f~~v~~~gs---~s~AA~~L~isq~avS~~I~~LE~~lg~~Lf~-R~~~~~~lT~~G~~l~~~a~ 78 (310)
T 2esn_A 15 LLVFDALYRHRN---VGTAASELAISASAFSHALGRLRQGLDDELFL-RQGNRMQPTQRAEHLAAAVA 78 (310)
T ss_dssp HHHHHHHHHHSS---HHHHHHHHTCCHHHHHHHHHHHHHHHTSCCEE-EETTEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC---HHHHHHHhCCChHHHHHHHHHHHHhhCCccee-ecCCCccccHHHHHHHHHHH
Confidence 345555555553 4567889999999999999999995 543333 44568999999999886543
No 279
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=77.75 E-value=2.9 Score=40.22 Aligned_cols=61 Identities=20% Similarity=0.312 Sum_probs=46.0
Q ss_pred HHHHHH-----HHhhCCCCCChHHHHHHh--CCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHHH
Q 018851 3 EEAILG-----YLEKNEQISDSGNFAAER--GFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKY 65 (349)
Q Consensus 3 e~~iL~-----~L~~~~~~~~~~~la~~~--g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~ 65 (349)
+++||+ .+...+. ..+.+||+.+ |+++..|.+.+..|+..|+|.-.-... --..|+.|.++
T Consensus 19 ~~~IL~~i~~~yl~~~~p-V~s~~La~~~~l~VS~aTIRrDL~~LE~~GlL~r~HgsA-gript~~g~r~ 86 (338)
T 1stz_A 19 QRKVLYCIVREYIENKKP-VSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIYQPHTSA-GRIPTDKGLRF 86 (338)
T ss_dssp HHHHHHHHHHHHHHHCSC-BCHHHHHHHSCCCSCHHHHHHHHHHHHHTTSEECCSSCS-CBEECHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCC-ccHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEccCcc-eecCCcccchh
Confidence 467888 6766665 7889999998 999999999999999999997432221 12457777554
No 280
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=77.07 E-value=3.3 Score=36.55 Aligned_cols=43 Identities=12% Similarity=-0.069 Sum_probs=38.7
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcE
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYI 46 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli 46 (349)
+..||..|..++. .+.++||+.+|++.+.|.+.+..|...++.
T Consensus 14 ~~~i~~~l~~~~~-~~~~~la~~~~vs~~TiRrDl~eL~~~~l~ 56 (190)
T 4a0z_A 14 REAIRQQIDSNPF-ITDHELSDLFQVSIQTIRLDRTYLNIPELR 56 (190)
T ss_dssp HHHHHHHHHHCTT-CCHHHHHHHHTSCHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHCCC-EeHHHHHHHHCCCHHHHHHHHHHhcCcchh
Confidence 4679999998887 678899999999999999999999998875
No 281
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=76.91 E-value=35 Score=30.99 Aligned_cols=112 Identities=8% Similarity=0.112 Sum_probs=72.3
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCC-cEEEEeeeeEEEEeChhHHHHhhcCChHHHHHHhcCc
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFR-YIDAQDIKRETWVLTGEGKKYAAEGSPEVQLFLAVPA 81 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kg-li~~~~~~~~~~~LTeEG~~~l~~G~PE~rl~~~l~~ 81 (349)
+..|...|...+....+.+++..+|++..++..++..|.+.+ ++.+.. ....+.++.+--+-+. .++...|..
T Consensus 4 ~~~l~~~L~~~~~~~~~~~l~~~~~l~~~~l~~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~l~~~L~~ 77 (258)
T 1lva_A 4 EKILAQIIQEHREGLDWQEAATRASLSLEETRKLLQSMAAAGQVTLLRV-ENDLYAISTERYQAWW-----QAVTRALEE 77 (258)
T ss_dssp HHHHHHHHHTCTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE-TTEEEEEEHHHHHHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHHHHhCCCEEEecc-CCccEEEcHHHHHHHH-----HHHHHHHHH
Confidence 344555665554323348999999999999999999988765 444433 1223346666555443 366666642
Q ss_pred -------CCCCCHHHHHhhcC----chhhhhHHHHHhhCCcEeeCceeee
Q 018851 82 -------EGSISKDELQKKLD----PAVFKIGCSQAGKNKWVEMGKQVSR 120 (349)
Q Consensus 82 -------~g~~~~~el~~~~~----~~~~~ig~g~~~k~~wi~i~~~i~~ 120 (349)
..+++.++|...++ ...+...+..+.+.|.+..++|.+.
T Consensus 78 ~H~~~P~~~G~~~~~L~~~~~~~~~~~l~~~ll~~l~~~g~l~~~~~~v~ 127 (258)
T 1lva_A 78 FHSRYPLRPGLAREELRSRYFSRLPARVYQALLEEWSREGRLQLAANTVA 127 (258)
T ss_dssp HHHHCTTSSCEEHHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEETTEEE
T ss_pred HHHhCCCccCCCHHHHHHhccccCCHHHHHHHHHHHHHCCCEEecCCEEe
Confidence 23488899987642 3344556678888999999988443
No 282
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=76.39 E-value=4.3 Score=34.36 Aligned_cols=48 Identities=25% Similarity=0.180 Sum_probs=36.4
Q ss_pred CChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHHHh
Q 018851 17 SDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYA 66 (349)
Q Consensus 17 ~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~l 66 (349)
.+-.++|..+|++.+.|.+.++.|+..|+|+.... ....+-.++..-+
T Consensus 147 ~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~--~i~i~d~~~L~~~ 194 (202)
T 2zcw_A 147 ATHDELAAAVGSVRETVTKVIGELAREGYIRSGYG--KIQLLDLKGLKEL 194 (202)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT--EEEESCHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCCC--EEEEeCHHHHHHH
Confidence 34588999999999999999999999999987542 2334444444433
No 283
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=76.32 E-value=2.7 Score=40.50 Aligned_cols=46 Identities=2% Similarity=0.106 Sum_probs=40.8
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEE
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQ 49 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~ 49 (349)
+.+||..|..++. .+..+||+.+|++...|...+..|.+.|+|...
T Consensus 18 ~~~il~~l~~~~~-~sr~~la~~~~ls~~tv~~~v~~L~~~g~i~~~ 63 (406)
T 1z6r_A 18 AGAVYRLIDQLGP-VSRIDLSRLAQLAPASITKIVHEMLEAHLVQEL 63 (406)
T ss_dssp HHHHHHHHHSSCS-CCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEC
T ss_pred HHHHHHHHHHcCC-cCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEee
Confidence 3569999988776 678899999999999999999999999999763
No 284
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=76.07 E-value=1.4 Score=39.11 Aligned_cols=60 Identities=15% Similarity=0.140 Sum_probs=45.6
Q ss_pred HHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccC-CcEEEEeeeeEEEEeChhHHHHhhc
Q 018851 5 AILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGF-RYIDAQDIKRETWVLTGEGKKYAAE 68 (349)
Q Consensus 5 ~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~k-gli~~~~~~~~~~~LTeEG~~~l~~ 68 (349)
+++.++...+ +.-.-|+.+++++.+|.+.++.||.. |.-=.+ +....++||++|+.++..
T Consensus 9 ~~f~~v~~~g---s~t~AA~~L~isq~avS~~i~~LE~~lg~~Lf~-R~~~~~~lT~~G~~l~~~ 69 (306)
T 3hhg_A 9 TVFVQVVESG---SFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLN-RTTRQLSLTEEGAQYFRR 69 (306)
T ss_dssp HHHHHHHHSS---SHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCEE-TTSSSCEECHHHHHHHHH
T ss_pred HHHHHHHHcC---CHHHHHHHhCCCHHHHHHHHHHHHHHhCCeeEe-ecCCCeeECHhHHHHHHH
Confidence 4555666665 35577889999999999999999995 543333 445689999999998754
No 285
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=75.38 E-value=3.4 Score=35.17 Aligned_cols=34 Identities=6% Similarity=0.078 Sum_probs=30.9
Q ss_pred CChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEe
Q 018851 17 SDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQD 50 (349)
Q Consensus 17 ~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~ 50 (349)
.+-.++|+.+|++.+.|.+.++.|+..|+|+...
T Consensus 170 ~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~ 203 (220)
T 3dv8_A 170 ITHETIANHLGSHREVITRMLRYFQVEGLVKLSR 203 (220)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCC
Confidence 4568999999999999999999999999998754
No 286
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=75.06 E-value=2 Score=38.30 Aligned_cols=61 Identities=16% Similarity=-0.001 Sum_probs=46.3
Q ss_pred HHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccC-CcEEEEeeeeEEEEeChhHHHHhhcCC
Q 018851 5 AILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGF-RYIDAQDIKRETWVLTGEGKKYAAEGS 70 (349)
Q Consensus 5 ~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~k-gli~~~~~~~~~~~LTeEG~~~l~~G~ 70 (349)
+++.++...+ +.-.-|+.+++++.+|.+.++.||.. |.-=.+.. . .+.||++|+.++..--
T Consensus 12 ~~f~~v~~~g---s~s~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~-~-~~~lT~~G~~l~~~a~ 73 (303)
T 3isp_A 12 AALAAVVELG---SFDAAAERLHVTPSAVSQRIKSLEQQVGQVLVVRE-K-PCRATTAGIPLLRLAA 73 (303)
T ss_dssp HHHHHHHHHT---CHHHHHTTTTCCHHHHHHHHHHHHHHHTSCCEECS-S-SCEECGGGHHHHHHHH
T ss_pred HHHHHHHHcC---CHHHHHHHhCCChHHHHHHHHHHHHHhCCeeEEcC-C-CCeeCchHHHHHHHHH
Confidence 4455555555 34567888999999999999999995 65555554 4 7999999999886543
No 287
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=74.37 E-value=2.7 Score=37.83 Aligned_cols=37 Identities=14% Similarity=0.147 Sum_probs=33.2
Q ss_pred CChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeee
Q 018851 17 SDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKR 53 (349)
Q Consensus 17 ~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~ 53 (349)
.+..+||+.+|++...|..++..|++.|+|+.....-
T Consensus 50 L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~~~~G 86 (237)
T 3c7j_A 50 LRQQELATLFGVSRMPVREALRQLEAQSLLRVETHKG 86 (237)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTTE
T ss_pred eCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCCc
Confidence 4778999999999999999999999999999886543
No 288
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=74.33 E-value=4.6 Score=38.48 Aligned_cols=69 Identities=13% Similarity=0.082 Sum_probs=50.9
Q ss_pred HHHHHHHHhhC-C--CCCChHHHHHHhCC-CHH---HHHHHHHHhccCCcEEEEee------eeEEEEeChhHHHHhhcC
Q 018851 3 EEAILGYLEKN-E--QISDSGNFAAERGF-DHN---DVVNVIKSLHGFRYIDAQDI------KRETWVLTGEGKKYAAEG 69 (349)
Q Consensus 3 e~~iL~~L~~~-~--~~~~~~~la~~~g~-~~~---~v~~~~~~L~~kgli~~~~~------~~~~~~LTeEG~~~l~~G 69 (349)
+..|...|.+. + ...+.++||+.+|. ++. .+.+.+.-|.+.|+++.... ....|.+|+.++.++.+.
T Consensus 43 ~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~~l~~~~ 122 (368)
T 3reo_A 43 ELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNE 122 (368)
T ss_dssp HTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTHHHHSCCT
T ss_pred HCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCeEEecccCCCCcccceeCcCHHHHHHhCCC
Confidence 34566777663 2 23688999999973 443 68899999999999987631 146899999999887765
Q ss_pred Ch
Q 018851 70 SP 71 (349)
Q Consensus 70 ~P 71 (349)
+|
T Consensus 123 ~~ 124 (368)
T 3reo_A 123 DG 124 (368)
T ss_dssp TS
T ss_pred CC
Confidence 54
No 289
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=74.05 E-value=1.6 Score=38.56 Aligned_cols=60 Identities=8% Similarity=0.075 Sum_probs=41.7
Q ss_pred HHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccC-CcEEEEeeeeEEEEeChhHHHHhhc
Q 018851 5 AILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGF-RYIDAQDIKRETWVLTGEGKKYAAE 68 (349)
Q Consensus 5 ~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~k-gli~~~~~~~~~~~LTeEG~~~l~~ 68 (349)
+++.++.+.+ +...-|+.+++++.+|.+.++.||+. |.-=.+ +....+.||++|+.++..
T Consensus 7 ~~f~~v~~~g---s~s~AA~~L~isq~avS~~i~~LE~~lg~~Lf~-R~~~~~~lT~~G~~l~~~ 67 (294)
T 1ixc_A 7 KYFIAVAEAG---NMAAAAKRLHVSQPPITRQMQALEADLGVVLLE-RSHRGIELTAAGHAFLED 67 (294)
T ss_dssp HHHHHHHHHS---SHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCBC------CCBCHHHHHHHHH
T ss_pred HHHHHHHHcC---CHHHHHHHhCCCcchHHHHHHHHHHHHCCEEEE-eCCCCeeECHhHHHHHHH
Confidence 4455555555 34567889999999999999999995 443333 445689999999998744
No 290
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=74.02 E-value=7.3 Score=31.55 Aligned_cols=46 Identities=11% Similarity=0.205 Sum_probs=37.1
Q ss_pred ChHHHHHHhcCcCCCCCHHHHHhhc--CchhhhhHHHHHhhCCcEeeC
Q 018851 70 SPEVQLFLAVPAEGSISKDELQKKL--DPAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 70 ~PE~rl~~~l~~~g~~~~~el~~~~--~~~~~~ig~g~~~k~~wi~i~ 115 (349)
.++..++..|...+++++.+|.+.+ .++...-.+..+-++|||...
T Consensus 41 ~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~ 88 (149)
T 4hbl_A 41 YSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRE 88 (149)
T ss_dssp HHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC-
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeC
Confidence 3588899999766779999999875 456677788999999999864
No 291
>3kfw_X Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.50A {Mycobacterium tuberculosis}
Probab=73.97 E-value=2.6 Score=38.90 Aligned_cols=67 Identities=9% Similarity=0.097 Sum_probs=50.1
Q ss_pred HHHHHH-hhCCCCCChH---HHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHHHhhcCChHHHHH
Q 018851 5 AILGYL-EKNEQISDSG---NFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAAEGSPEVQLF 76 (349)
Q Consensus 5 ~iL~~L-~~~~~~~~~~---~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~l~~G~PE~rl~ 76 (349)
.|+..| ...+.....- .+.+.+|++...|.-++..|.+.|.++.+..- |.||+.|.+.+..+ +.+++
T Consensus 8 lIlsll~g~~g~~i~~~~Li~l~~~~Gi~e~avRtAlsRL~~~G~L~~~~~G---Y~LT~~~~~~~~~~--~~rI~ 78 (247)
T 3kfw_X 8 VVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADG---YRLSDRLLARQRRQ--DEAMR 78 (247)
T ss_dssp HHHHHHTTTTTSCBCHHHHHHHHTTTTCCHHHHHHHHHHHHHTTSEEEETTE---EEECHHHHHHHHHH--HHHHS
T ss_pred eeEeeecCCCCCcccHHHHHHHHHHcCCChHHHHHHHHHHHHcCCeeccCCc---eeeCHHHHHHHHHH--HHHhc
Confidence 466655 4434334443 34567899999999999999999999987654 99999999887766 55665
No 292
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=73.71 E-value=0.91 Score=46.50 Aligned_cols=97 Identities=11% Similarity=0.060 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhhCCceecCCCCceee-eehhhhccCCCCCCCCCCCCCeeeecCCCCCCCCCHHHHHHHHHHhhcCCC
Q 018851 218 LLKVRKQLKDIFLQMGFEEMPTNNFVES-SFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHESGGY 296 (349)
Q Consensus 218 l~~~~~~ir~if~~mGF~e~~~~~~Ves-~fwNFDaLf~PqdHPARd~~DTFyl~~p~~~~~~p~~~~erVk~vHe~Gg~ 296 (349)
.+.+++.+++.+...||+||.+ |.+.. +.|-= +=..|.. -.|.|.+.+.... .+.
T Consensus 204 ~raL~~f~~d~~~~~Gy~EV~~-P~lv~~el~~~-sG~l~~f-----~eemy~v~~~g~~--~~~--------------- 259 (522)
T 3vbb_A 204 EQALIQYALRTLGSRGYIPIYT-PFFMRKEVMQE-VAQLSQF-----DEELYKVIGKGSE--KSD--------------- 259 (522)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEC-CSEEEHHHHHH-HSCCC-C-----CSCCCEEC-------------------------
T ss_pred HHHHHHHHHHHHHHcCCEEEEC-CcccchHHHhh-cCCcccC-----cccceEeecCCcc--ccc---------------
Confidence 3456777888888899999975 55533 33321 1111211 2357777541100 000
Q ss_pred CCCCcccccchhhhhccccCCCCchhHHHHHHHhh--cCCCCCceEEecCceecC
Q 018851 297 GSRGYGYEWKREEANKNLLRTHTTAVSSRMLKALA--EKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 297 gS~Gw~Y~W~~~~a~~~vLRTHTTavs~r~L~~l~--~~~~~p~k~fsi~rVfR~ 349 (349)
.+......||. |+++..-.|+.-. +...-|.|++.++.|||.
T Consensus 260 ----------~~~~~~l~L~P-TaE~~l~~l~~~ei~s~~dLPlr~~~~s~cFR~ 303 (522)
T 3vbb_A 260 ----------DNSYDEKYLIA-TSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQ 303 (522)
T ss_dssp --------------CCEEECS-STHHHHHTTSTTCEECTTTCCEEEEEEEEEECS
T ss_pred ----------cccCcceeEcc-cCcHHHHHHHhhhecccccCCeeEEEecccccC
Confidence 00112467774 4444433333211 113469999999999995
No 293
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=73.71 E-value=2.1 Score=38.31 Aligned_cols=60 Identities=13% Similarity=0.030 Sum_probs=44.1
Q ss_pred HHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccC-CcEEEEeeeeEEEEeChhHHHHhhc
Q 018851 5 AILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGF-RYIDAQDIKRETWVLTGEGKKYAAE 68 (349)
Q Consensus 5 ~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~k-gli~~~~~~~~~~~LTeEG~~~l~~ 68 (349)
+++.++.+.+ +.-.-|+.+++++.+|.+.++.||.. |.-=.+ +....+.||++|+.++..
T Consensus 8 ~~f~~v~~~g---s~t~AA~~L~isq~avS~~i~~LE~~lg~~Lf~-R~~r~~~lT~~G~~l~~~ 68 (305)
T 3fxq_A 8 QALICIEEVG---SLRAAAQLLHLSQPALSAAIQQLEDELKAPLLV-RTKRGVSLTSFGQAFMKH 68 (305)
T ss_dssp HHHHHHHHHS---CHHHHHHHTTCCHHHHHHHHHHHHHHHTSCSEE-ECSSSEEECHHHHHHHHH
T ss_pred HHHHHHHHcC---CHHHHHHHhCCCHHHHHHHHHHHHHHhCCeeEE-ecCCCccCCHhHHHHHHH
Confidence 3444555554 34567889999999999999999995 543333 445679999999998744
No 294
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=73.56 E-value=18 Score=32.88 Aligned_cols=103 Identities=6% Similarity=-0.083 Sum_probs=73.8
Q ss_pred CCCCCChHHHHHHhCCCHHHHHHHHHHhc------cCCcEEEEeeeeEEEEeChhHHHHhhcCChH----------HHHH
Q 018851 13 NEQISDSGNFAAERGFDHNDVVNVIKSLH------GFRYIDAQDIKRETWVLTGEGKKYAAEGSPE----------VQLF 76 (349)
Q Consensus 13 ~~~~~~~~~la~~~g~~~~~v~~~~~~L~------~kgli~~~~~~~~~~~LTeEG~~~l~~G~PE----------~rl~ 76 (349)
.+.+.+..+||+.++++..+|..++..|. ..|+--++....-.+..-++=..|++.=.++ -.++
T Consensus 27 a~epvs~~~La~~l~~~~~~v~~~l~~L~~~y~~~~rGiel~~v~~gy~l~T~~e~~~~v~~~~~~~~~~~Ls~aaLEtL 106 (219)
T 2z99_A 27 IDTPVTADALAAATEQPVYRVAAKLQLMADELTGRDSGIDLRHTSEGWRMYTRARFAPYVEKLLLDGARTKLTRAALETL 106 (219)
T ss_dssp CSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEEECGGGHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred cCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHhhCCCCEEEEEECCEEEEEEcHHHHHHHHHHhcccccCccCHHHHHHH
Confidence 44458899999999999999999999985 3576666655555666666666665442221 2256
Q ss_pred HhcCcCCCCCHHHHHhhcCchhhhhHHHHHhhCCcEeeCc
Q 018851 77 LAVPAEGSISKDELQKKLDPAVFKIGCSQAGKNKWVEMGK 116 (349)
Q Consensus 77 ~~l~~~g~~~~~el~~~~~~~~~~ig~g~~~k~~wi~i~~ 116 (349)
..|.-.++++..+|.+..|-+. .-.+..++..|||...+
T Consensus 107 aiIAy~QPITR~eI~~irGv~~-~~~v~~Lle~gLI~e~G 145 (219)
T 2z99_A 107 AVVAYRQPVTRARVSAVRGVNV-DAVMRTLLARGLITEVG 145 (219)
T ss_dssp HHHHHHCSEEHHHHHHHHTSCC-HHHHHHHHHTTSEEEEE
T ss_pred HHHHHcCCcCHHHHHHHHCCCH-HHHHHHHHHCCCEEEcc
Confidence 6665557899999988766554 34689999999998754
No 295
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=73.45 E-value=5.8 Score=31.74 Aligned_cols=46 Identities=13% Similarity=0.287 Sum_probs=36.6
Q ss_pred ChHHHHHHhcCcCCCCCHHHHHhhc--CchhhhhHHHHHhhCCcEeeC
Q 018851 70 SPEVQLFLAVPAEGSISKDELQKKL--DPAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 70 ~PE~rl~~~l~~~g~~~~~el~~~~--~~~~~~ig~g~~~k~~wi~i~ 115 (349)
.++..++..|...+++++.+|.+.+ .++...-.+..+-++|||...
T Consensus 37 ~~~~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~ 84 (142)
T 3ech_A 37 PPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRE 84 (142)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeec
Confidence 3588999999876789999999885 456677788999999999874
No 296
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=73.08 E-value=13 Score=30.56 Aligned_cols=46 Identities=17% Similarity=0.281 Sum_probs=37.5
Q ss_pred ChHHHHHHhcCcCCCCCHHHHHhhc--CchhhhhHHHHHhhCCcEeeC
Q 018851 70 SPEVQLFLAVPAEGSISKDELQKKL--DPAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 70 ~PE~rl~~~l~~~g~~~~~el~~~~--~~~~~~ig~g~~~k~~wi~i~ 115 (349)
.+++.++..|...+++++.+|.+.+ .++...-.+..+-++|||...
T Consensus 46 ~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 93 (162)
T 3k0l_A 46 LPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKA 93 (162)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEec
Confidence 3588889888776779999999885 466677788999999999764
No 297
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=72.98 E-value=9.4 Score=30.81 Aligned_cols=44 Identities=7% Similarity=0.142 Sum_probs=37.0
Q ss_pred ChHHHHHHhcCcCCCCCHHHHHhhc--CchhhhhHHHHHhhCCcEee
Q 018851 70 SPEVQLFLAVPAEGSISKDELQKKL--DPAVFKIGCSQAGKNKWVEM 114 (349)
Q Consensus 70 ~PE~rl~~~l~~~g~~~~~el~~~~--~~~~~~ig~g~~~k~~wi~i 114 (349)
.++.+++..| ..+++++.+|.+.+ .++...-.+..+.++|||..
T Consensus 38 ~~q~~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r 83 (151)
T 3kp7_A 38 AEQSHVLNML-SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKL 83 (151)
T ss_dssp HHHHHHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 4588899999 77789999999885 56677788899999999986
No 298
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=72.95 E-value=3.5 Score=36.20 Aligned_cols=55 Identities=18% Similarity=0.126 Sum_probs=43.3
Q ss_pred CChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHHHhhcCChHH
Q 018851 17 SDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAAEGSPEV 73 (349)
Q Consensus 17 ~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~l~~G~PE~ 73 (349)
.+-.++|..+|++.+.|.+.++.|+..|+|+.... ....+-.++.+-+.++.|.+
T Consensus 178 ~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~~~--~i~i~d~~~L~~~a~~~~~~ 232 (250)
T 3e6c_C 178 LSQKSIGEITGVHHVTVSRVLASLKRENILDKKKN--KIIVYNLGELKHLSEQTSYY 232 (250)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSS--EEEESCHHHHHHHHTSSCCC
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEeCCC--EEEEecHHHHHHHHccCccc
Confidence 46688999999999999999999999999998664 35556666666665655543
No 299
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=72.90 E-value=3.4 Score=34.54 Aligned_cols=55 Identities=15% Similarity=0.267 Sum_probs=42.3
Q ss_pred HHHHHHHhhCCCCCChHHHHHHh-----CCCHHHHHHHHHHhccCCcEEEEee--eeEEEEeC
Q 018851 4 EAILGYLEKNEQISDSGNFAAER-----GFDHNDVVNVIKSLHGFRYIDAQDI--KRETWVLT 59 (349)
Q Consensus 4 ~~iL~~L~~~~~~~~~~~la~~~-----g~~~~~v~~~~~~L~~kgli~~~~~--~~~~~~LT 59 (349)
..||..|...+ ..+.+++.+.+ +++...|.+.+..|.+.|+|..-.. ....|.+.
T Consensus 22 ~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~~~~~~~~Y~~~ 83 (145)
T 3eyy_A 22 QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAHLGHGAPTYHLA 83 (145)
T ss_dssp HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEECGGGCEEEEET
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEEeCCCceEEEeC
Confidence 56888888766 57888877654 7899999999999999999975443 23467664
No 300
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=72.32 E-value=18 Score=28.50 Aligned_cols=46 Identities=11% Similarity=0.029 Sum_probs=37.2
Q ss_pred ChHHHHHHhc-CcCCCCCHHHHHhhcC--chhhhhHHHHHhhCCcEeeC
Q 018851 70 SPEVQLFLAV-PAEGSISKDELQKKLD--PAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 70 ~PE~rl~~~l-~~~g~~~~~el~~~~~--~~~~~ig~g~~~k~~wi~i~ 115 (349)
.++..++..| ...+++++.+|.+.++ ++...-.+..+.++|||...
T Consensus 37 ~~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~ 85 (146)
T 2fbh_A 37 QARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRL 85 (146)
T ss_dssp TTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeec
Confidence 4588999999 6566799999998854 55667788999999999774
No 301
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=71.41 E-value=1.9 Score=44.96 Aligned_cols=38 Identities=8% Similarity=0.093 Sum_probs=26.0
Q ss_pred ccccCCCCchhHHHHHHHhh-cCCCCCceEEecCceecC
Q 018851 312 KNLLRTHTTAVSSRMLKALA-EKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 312 ~~vLRTHTTavs~r~L~~l~-~~~~~p~k~fsi~rVfR~ 349 (349)
...||.=+|+.-+++..... +....|.|++.++.|||.
T Consensus 326 ~~~LrP~~~~~~~~~~~~~~~syr~LPlr~~~~g~~fR~ 364 (642)
T 1qf6_A 326 EYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRN 364 (642)
T ss_dssp EEEECSSSHHHHHHHHTTSCEEGGGCSEEEEEEEEEECC
T ss_pred eEEecCCCCHHHHHHHHhhhhhccccCeEEEEeccEEec
Confidence 57888766666666654321 112369999999999995
No 302
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=71.39 E-value=8.6 Score=29.71 Aligned_cols=60 Identities=10% Similarity=0.054 Sum_probs=48.0
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHh-CCCHHHHHHHHHHhccCCcEEEEeee-eEEEEeChh
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAER-GFDHNDVVNVIKSLHGFRYIDAQDIK-RETWVLTGE 61 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~-g~~~~~v~~~~~~L~~kgli~~~~~~-~~~~~LTeE 61 (349)
+|.+||..++......+-++|+..+ +++.++.+.++..|-+.|-|+.-+.. .-.|.+-+.
T Consensus 15 ie~~IL~l~~~~P~GItd~~L~~~~p~~~~~~r~~aIN~LL~~gkiel~K~~~~liYr~k~~ 76 (81)
T 2dk8_A 15 IENRIIELCHQFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSNTGLLYRIKDS 76 (81)
T ss_dssp HHHHHHHHHHHCSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHHTSEEEEECSSSEEEEECCC
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHcCCeEEEecCCeEEEEeccc
Confidence 6889999999877656667788775 56999999999999999999987664 347777553
No 303
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=71.36 E-value=4.3 Score=31.94 Aligned_cols=47 Identities=13% Similarity=0.192 Sum_probs=37.2
Q ss_pred ChHHHHHHhcCcCCCCCHHHHHhhcC------chhhhhHHHHHhhCCcEeeCc
Q 018851 70 SPEVQLFLAVPAEGSISKDELQKKLD------PAVFKIGCSQAGKNKWVEMGK 116 (349)
Q Consensus 70 ~PE~rl~~~l~~~g~~~~~el~~~~~------~~~~~ig~g~~~k~~wi~i~~ 116 (349)
.+|..++.+|...+++++.+|.+.++ ++...-.+..+.++|||....
T Consensus 10 ~~~~~vL~~l~~~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~ 62 (123)
T 1okr_A 10 SAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKK 62 (123)
T ss_dssp HHHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEe
Confidence 45788888887656799999998765 566677789999999997643
No 304
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=71.26 E-value=2.5 Score=35.23 Aligned_cols=53 Identities=17% Similarity=0.081 Sum_probs=40.7
Q ss_pred HHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeC
Q 018851 5 AILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLT 59 (349)
Q Consensus 5 ~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LT 59 (349)
.+|..|...... ++.++|+..+++..-+...+..|...|||....- .--|.|+
T Consensus 13 ~~L~~La~~~~~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG-~GGy~La 65 (145)
T 1xd7_A 13 HILSLISMDEKT-SSEIIADSVNTNPVVVRRMISLLKKADILTSRAG-VPGASLK 65 (145)
T ss_dssp HHHHHHHTCSCC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSS-SSSCEES
T ss_pred HHHHHHHhCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeecC-CCCceec
Confidence 466677654333 7899999999999999999999999999986653 3334443
No 305
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=71.11 E-value=47 Score=30.09 Aligned_cols=112 Identities=9% Similarity=-0.065 Sum_probs=66.7
Q ss_pred HHHHHHHHhh------CCCCCChHHHHHHhC--CCHHHHHHHHHHhccCCcEEEEeeeeE----EEEeChhHHHHhhcCC
Q 018851 3 EEAILGYLEK------NEQISDSGNFAAERG--FDHNDVVNVIKSLHGFRYIDAQDIKRE----TWVLTGEGKKYAAEGS 70 (349)
Q Consensus 3 e~~iL~~L~~------~~~~~~~~~la~~~g--~~~~~v~~~~~~L~~kgli~~~~~~~~----~~~LTeEG~~~l~~G~ 70 (349)
..+|+..|.. .....+.+++...++ ++..-+...+..|.+.|.|..+..-.. ...++++=+...
T Consensus 68 ~~~l~~~L~~~H~~~P~~~G~~~~~L~~~~~~~~~~~l~~~ll~~l~~~g~l~~~~~~v~l~~h~~~~~~~~~~~~---- 143 (258)
T 1lva_A 68 WQAVTRALEEFHSRYPLRPGLAREELRSRYFSRLPARVYQALLEEWSREGRLQLAANTVALAGFTPSFSETQKKLL---- 143 (258)
T ss_dssp HHHHHHHHHHHHHHCTTSSCEEHHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEETTEEEETTCCCCCCHHHHHHH----
T ss_pred HHHHHHHHHHHHHhCCCccCCCHHHHHHhccccCCHHHHHHHHHHHHHCCCEEecCCEEeCCCCccCCCHHHHHHH----
Confidence 4567777764 111245678887764 666666777789999998877543211 123333332222
Q ss_pred hHHHHHHhcCcCC--CCCHHHHHhhcCc--hhhhhHHHHHhhCC-cEeeCceeee
Q 018851 71 PEVQLFLAVPAEG--SISKDELQKKLDP--AVFKIGCSQAGKNK-WVEMGKQVSR 120 (349)
Q Consensus 71 PE~rl~~~l~~~g--~~~~~el~~~~~~--~~~~ig~g~~~k~~-wi~i~~~i~~ 120 (349)
.+|...+...| +-...||...++. ....-.+..|.+.| .++++++++-
T Consensus 144 --~~i~~~~~~~g~~pp~~~dl~~~l~~~~~~~~~~l~~l~~~g~lv~l~~~~~~ 196 (258)
T 1lva_A 144 --KDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLVKINDEFYW 196 (258)
T ss_dssp --HHHHHHHHHHTTSCCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEESSSSBEE
T ss_pred --HHHHHHHHHCCCCCCCHHHHHhHhCCCHHHHHHHHHHHHHCCCEEEecCCeEE
Confidence 34555554334 3357888877653 34445778899999 5677777443
No 306
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=70.90 E-value=7.7 Score=33.96 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=31.4
Q ss_pred CChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee
Q 018851 17 SDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI 51 (349)
Q Consensus 17 ~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~ 51 (349)
.+-.++|..+|++.+.|.++++.|+..|+|+....
T Consensus 194 lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~~~ 228 (243)
T 3la7_A 194 LSHQAIAEAIGSTRVTVTRLLGDLREKKMISIHKK 228 (243)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCHHHHHHHHCCcHHHHHHHHHHHHHCCCEEEcCC
Confidence 35689999999999999999999999999998643
No 307
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=70.89 E-value=6.5 Score=35.76 Aligned_cols=71 Identities=15% Similarity=0.043 Sum_probs=49.7
Q ss_pred HHHHHHHHhh--CCCCCChHHHHHHhCCCHHHHHHHHHH-hccCCcEEEEeeeeEEEEeChhHHHHhhcCChHHHHH
Q 018851 3 EEAILGYLEK--NEQISDSGNFAAERGFDHNDVVNVIKS-LHGFRYIDAQDIKRETWVLTGEGKKYAAEGSPEVQLF 76 (349)
Q Consensus 3 e~~iL~~L~~--~~~~~~~~~la~~~g~~~~~v~~~~~~-L~~kgli~~~~~~~~~~~LTeEG~~~l~~G~PE~rl~ 76 (349)
|+.++..+.. .+...+..++|..+|++...+.+.++. |...|+|.... .-..+|+-|.+|+....|.+-|+
T Consensus 249 e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~---~g~~~~~~~~~~~~~~~~~~~~~ 322 (324)
T 1hqc_A 249 DREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTP---RGRVPTELAYRHLGYPPPVGPLL 322 (324)
T ss_dssp HHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEET---TEEEECHHHHHHTTCCCCC----
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCC---ccceecHHHHHHHhcCCCCCCCC
Confidence 4556655443 233356788999999999999997777 77899997543 45699999999996556655443
No 308
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=70.72 E-value=8 Score=30.85 Aligned_cols=46 Identities=11% Similarity=0.067 Sum_probs=36.9
Q ss_pred ChHHHHHHhcCcCCCCCHHHHHhhc--CchhhhhHHHHHhhCCcEeeC
Q 018851 70 SPEVQLFLAVPAEGSISKDELQKKL--DPAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 70 ~PE~rl~~~l~~~g~~~~~el~~~~--~~~~~~ig~g~~~k~~wi~i~ 115 (349)
.++..++..|...+++++.+|.+.+ .++...-.+..+.++|||...
T Consensus 37 ~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~ 84 (143)
T 3oop_A 37 PEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLLRKELIVRE 84 (143)
T ss_dssp HHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeecc
Confidence 4588888888765679999999885 455667788999999999764
No 309
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=70.62 E-value=5.2 Score=35.99 Aligned_cols=42 Identities=7% Similarity=-0.083 Sum_probs=34.7
Q ss_pred CCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEE
Q 018851 15 QISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETW 56 (349)
Q Consensus 15 ~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~ 56 (349)
.+-+..+||+.+|++...|..|+..|++.|+|......-..+
T Consensus 28 ~lPse~~La~~~~vSr~tvr~Al~~L~~~g~i~~~~g~G~~V 69 (239)
T 3bwg_A 28 KLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQVRGSGIFV 69 (239)
T ss_dssp BCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTTEEEE
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEeCCceEEE
Confidence 333667899999999999999999999999998766554433
No 310
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=70.41 E-value=5.3 Score=35.26 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=34.2
Q ss_pred ChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEE
Q 018851 18 DSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETW 56 (349)
Q Consensus 18 ~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~ 56 (349)
+-.+||+.+|++...|..|+..|++.|+|......-.++
T Consensus 33 sE~eLa~~~gVSR~tVReAL~~L~~eGlv~~~~g~G~~V 71 (239)
T 1hw1_A 33 AERELSELIGVTRTTLREVLQRLARDGWLTIQHGKPTKV 71 (239)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEEE
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEecCCCcEe
Confidence 567899999999999999999999999999987755433
No 311
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=70.34 E-value=3.6 Score=31.22 Aligned_cols=43 Identities=19% Similarity=0.332 Sum_probs=35.7
Q ss_pred HHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEE
Q 018851 5 AILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDA 48 (349)
Q Consensus 5 ~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~ 48 (349)
..+..++.+. +...++||..+|++.+.++.-++.|++.|.++-
T Consensus 11 ~Fi~yIk~~K-vv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltG 53 (72)
T 1wi9_A 11 EFINYIKKSK-VVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTG 53 (72)
T ss_dssp HHHHHHHHCS-EECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCE
T ss_pred HHHHHHHHcC-eeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEE
Confidence 4456666555 478999999999999999999999999887753
No 312
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=70.26 E-value=6.3 Score=33.65 Aligned_cols=45 Identities=7% Similarity=0.051 Sum_probs=35.5
Q ss_pred CChHHHHHHhCCCHHHHHHHHHHhccCCcEEEE-eeeeEEEEeChhHH
Q 018851 17 SDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQ-DIKRETWVLTGEGK 63 (349)
Q Consensus 17 ~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~-~~~~~~~~LTeEG~ 63 (349)
.+-.++|+.+|++.+.|.+.++.|+..|+|+.. .. ....+-.++.
T Consensus 168 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~--~i~i~d~~~L 213 (220)
T 2fmy_A 168 LNTEEIALMLGTTRQTVSVLLNDFKKMGILERVNQR--TLLLKDLQKL 213 (220)
T ss_dssp SCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEESSSS--EEEESCHHHH
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEEcCCC--EEEEcCHHHH
Confidence 456899999999999999999999999999886 54 3333444443
No 313
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=68.83 E-value=4.6 Score=36.41 Aligned_cols=42 Identities=2% Similarity=-0.101 Sum_probs=34.6
Q ss_pred CCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEE
Q 018851 15 QISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETW 56 (349)
Q Consensus 15 ~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~ 56 (349)
.+-+..+||+.+|++...|..|+..|++.|+|......-..+
T Consensus 32 ~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G~~V 73 (236)
T 3edp_A 32 LMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRKNGVGLYV 73 (236)
T ss_dssp --CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTTEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEECCceEEE
Confidence 333667899999999999999999999999998877665444
No 314
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=68.81 E-value=5.4 Score=38.13 Aligned_cols=56 Identities=13% Similarity=0.105 Sum_probs=44.5
Q ss_pred HHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee-------eeEEEEeChhH
Q 018851 5 AILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI-------KRETWVLTGEG 62 (349)
Q Consensus 5 ~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~-------~~~~~~LTeEG 62 (349)
+||..|. .+. .+..+||+.+|++..+|.+.++.|.+.|+|..... ....+.+.+++
T Consensus 24 ~il~~l~-~~~-~sr~~la~~~gls~~tv~~~v~~L~~~gli~~~~~~~~~~GR~~~~l~~~~~~ 86 (380)
T 2hoe_A 24 RILKRIM-KSP-VSRVELAEELGLTKTTVGEIAKIFLEKGIVVEEKDSPKGVGRPTKSLKISPNC 86 (380)
T ss_dssp CSHHHHH-HSC-BCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEECCC----CCCEEEEECGGG
T ss_pred HHHHHHH-cCC-cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCCCCCceEEEEccCC
Confidence 5888898 666 67889999999999999999999999999976532 23345555554
No 315
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=68.24 E-value=6.1 Score=33.96 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=35.1
Q ss_pred CChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhH
Q 018851 17 SDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEG 62 (349)
Q Consensus 17 ~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG 62 (349)
.+-.++|..+|++.+.|.+.++.|+..|+|+.... ....+-.++
T Consensus 176 ~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~~~--~i~i~d~~~ 219 (231)
T 3e97_A 176 LGTQDIMARTSSSRETVSRVLKRLEAHNILEVSPR--SVTLLDLAA 219 (231)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSS--CEEESCHHH
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEecCC--EEEEeCHHH
Confidence 35688999999999999999999999999988653 333444444
No 316
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=68.16 E-value=4.9 Score=36.32 Aligned_cols=42 Identities=10% Similarity=0.083 Sum_probs=34.7
Q ss_pred CCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEE
Q 018851 15 QISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETW 56 (349)
Q Consensus 15 ~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~ 56 (349)
.+-+..+||+.+|++...|..|+..|++.|+|......-..+
T Consensus 33 ~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G~~V 74 (243)
T 2wv0_A 33 PLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFV 74 (243)
T ss_dssp BCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSCEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEeCCCeEEE
Confidence 333667999999999999999999999999998766554433
No 317
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=68.03 E-value=11 Score=31.39 Aligned_cols=46 Identities=9% Similarity=0.023 Sum_probs=36.7
Q ss_pred ChHHHHHHhcCc-CCCCCHHHHHhhc--CchhhhhHHHHHhhCCcEeeC
Q 018851 70 SPEVQLFLAVPA-EGSISKDELQKKL--DPAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 70 ~PE~rl~~~l~~-~g~~~~~el~~~~--~~~~~~ig~g~~~k~~wi~i~ 115 (349)
.++..++..|.. ++++++.+|.+.+ .++...-.+..+.++|||...
T Consensus 53 ~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~ 101 (166)
T 3deu_A 53 QTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQ 101 (166)
T ss_dssp HHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEee
Confidence 358888888865 5569999999885 455677788999999999875
No 318
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=67.33 E-value=2 Score=40.85 Aligned_cols=62 Identities=8% Similarity=0.129 Sum_probs=47.9
Q ss_pred HHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEE-EEeChhHHHHhhcCCh
Q 018851 5 AILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRET-WVLTGEGKKYAAEGSP 71 (349)
Q Consensus 5 ~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~-~~LTeEG~~~l~~G~P 71 (349)
.|...|. .+ ..+.++||+.+|+++..+.+.+.-|.+.|+++... ... |.+|+.++.. ..+.|
T Consensus 62 glf~~l~-~g-~~t~~eLA~~~g~~~~~l~rlLr~L~~~g~l~~~~--~~~~y~~t~~s~~L-~~~~~ 124 (369)
T 3gwz_A 62 GVPELLQ-EG-PRTATALAEATGAHEQTLRRLLRLLATVGVFDDLG--HDDLFAQNALSAVL-LPDPA 124 (369)
T ss_dssp TTGGGGT-TS-CEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEECS--STTEEECCHHHHTT-SCCTT
T ss_pred Chhhhhc-CC-CCCHHHHHHHHCcCHHHHHHHHHHHHhCCCEEEeC--CCceEecCHHHHHH-hcCCc
Confidence 3445554 23 36789999999999999999999999999998643 234 9999999884 45444
No 319
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=67.10 E-value=18 Score=28.67 Aligned_cols=45 Identities=16% Similarity=0.300 Sum_probs=36.7
Q ss_pred ChHHHHHHhcCcCCCCCHHHHHhhc--CchhhhhHHHHHhhCCcEeeC
Q 018851 70 SPEVQLFLAVPAEGSISKDELQKKL--DPAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 70 ~PE~rl~~~l~~~g~~~~~el~~~~--~~~~~~ig~g~~~k~~wi~i~ 115 (349)
.++.+++..|...+ +++.+|.+.+ .++...-.+..+.++|||...
T Consensus 38 ~~~~~iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~ 84 (146)
T 3tgn_A 38 NTQEHILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETS 84 (146)
T ss_dssp HHHHHHHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEec
Confidence 35888999998777 9999999885 455677788999999999764
No 320
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=67.07 E-value=3.7 Score=36.01 Aligned_cols=40 Identities=8% Similarity=-0.011 Sum_probs=34.7
Q ss_pred CChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEE
Q 018851 17 SDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETW 56 (349)
Q Consensus 17 ~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~ 56 (349)
.+..+||+.+|++...|..|+..|++.|+|++....-..+
T Consensus 36 L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~~G~~V 75 (218)
T 3sxy_A 36 LNVRELSEKLGISFTPVRDALLQLATEGLVKVVPRVGFFV 75 (218)
T ss_dssp ECHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEETTTEEEE
T ss_pred eCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCCceEE
Confidence 3678899999999999999999999999999887754433
No 321
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=67.03 E-value=6 Score=39.65 Aligned_cols=23 Identities=9% Similarity=0.270 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhhCCceecCCCCce
Q 018851 220 KVRKQLKDIFLQMGFEEMPTNNFV 243 (349)
Q Consensus 220 ~~~~~ir~if~~mGF~e~~~~~~V 243 (349)
+++..||++|.+.||.|+.| |.+
T Consensus 161 ~i~~~iR~ff~~~gF~EVeT-PiL 183 (456)
T 3m4p_A 161 EIQWYFRKYYHDNHFTEIQP-PTI 183 (456)
T ss_dssp HHHHHHHHHHHHTTCEECCC-CSE
T ss_pred HHHHHHHHHHHhCCCEEEeC-Cee
Confidence 67788999999999999986 665
No 322
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=67.01 E-value=14 Score=29.02 Aligned_cols=45 Identities=4% Similarity=0.085 Sum_probs=35.6
Q ss_pred hHHHHHHhcCcCC--CCCHHHHHhhc--CchhhhhHHHHHhhCCcEeeC
Q 018851 71 PEVQLFLAVPAEG--SISKDELQKKL--DPAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 71 PE~rl~~~l~~~g--~~~~~el~~~~--~~~~~~ig~g~~~k~~wi~i~ 115 (349)
++..++..|...+ ++++.+|.+.+ .++...-.+..+.++|||...
T Consensus 35 ~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~ 83 (141)
T 3bro_A 35 TQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRK 83 (141)
T ss_dssp HHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEee
Confidence 4788888887544 69999999885 455666788999999999763
No 323
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=66.86 E-value=11 Score=37.38 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhhCCceecCCCCceee
Q 018851 220 KVRKQLKDIFLQMGFEEMPTNNFVES 245 (349)
Q Consensus 220 ~~~~~ir~if~~mGF~e~~~~~~Ves 245 (349)
+++..||++|.+.||.|+.| |.+.+
T Consensus 142 ~i~~~iR~f~~~~gF~EVeT-PiL~~ 166 (438)
T 3nem_A 142 SVFKAVRDFFHENGFIEIHT-PKIIA 166 (438)
T ss_dssp HHHHHHHHHHHHTTCEECCC-CSEES
T ss_pred HHHHHHHHHHHHCCcEEEeC-CEEec
Confidence 67788999999999999986 77654
No 324
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=66.55 E-value=5.8 Score=35.57 Aligned_cols=40 Identities=13% Similarity=0.021 Sum_probs=34.8
Q ss_pred CChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEE
Q 018851 17 SDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETW 56 (349)
Q Consensus 17 ~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~ 56 (349)
.+..+||+.+|++...|..|+..|++.|||++....-..+
T Consensus 52 L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~~G~~V 91 (239)
T 2hs5_A 52 LSEPDICAALDVSRNTVREAFQILIEDRLVAHELNRGVFV 91 (239)
T ss_dssp ECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEE
T ss_pred eCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCCeeEE
Confidence 3678899999999999999999999999999987754433
No 325
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=66.54 E-value=15 Score=28.75 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=36.6
Q ss_pred ChHHHHHHhcCcCCCCCHHHHHhhc--CchhhhhHHHHHhhCCcEee
Q 018851 70 SPEVQLFLAVPAEGSISKDELQKKL--DPAVFKIGCSQAGKNKWVEM 114 (349)
Q Consensus 70 ~PE~rl~~~l~~~g~~~~~el~~~~--~~~~~~ig~g~~~k~~wi~i 114 (349)
.++..++..|...+++++.+|.+.+ .++...-.+..+.++|||..
T Consensus 29 ~~~~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~ 75 (138)
T 3bpv_A 29 DAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEESGFIER 75 (138)
T ss_dssp HHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 3488888888766779999999885 45566678899999999987
No 326
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=66.18 E-value=4.1 Score=36.31 Aligned_cols=34 Identities=9% Similarity=0.186 Sum_probs=30.7
Q ss_pred ChHHHHHHhCCCHHHHHHHHHHhccCCcEEE--Eee
Q 018851 18 DSGNFAAERGFDHNDVVNVIKSLHGFRYIDA--QDI 51 (349)
Q Consensus 18 ~~~~la~~~g~~~~~v~~~~~~L~~kgli~~--~~~ 51 (349)
+..+||+.+|++...|..|+..|++.|+|++ ...
T Consensus 30 sE~~La~~lgVSRtpVREAL~~L~~~GlV~~~~~~~ 65 (239)
T 2di3_A 30 SERALSETLGVSRSSLREALRVLEALGTISTATGSG 65 (239)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHHTSEECCSTTS
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeecccC
Confidence 3448999999999999999999999999999 665
No 327
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=65.77 E-value=6.8 Score=33.66 Aligned_cols=35 Identities=6% Similarity=0.121 Sum_probs=31.6
Q ss_pred CChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee
Q 018851 17 SDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI 51 (349)
Q Consensus 17 ~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~ 51 (349)
.+-.++|..+|++.+.|.+.++.|+..|+|+....
T Consensus 181 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~ 215 (232)
T 2gau_A 181 LSREELATLSNMTVSNAIRTLSTFVSERMLALDGK 215 (232)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEETT
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeCCC
Confidence 45688999999999999999999999999988754
No 328
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=65.62 E-value=9.5 Score=32.49 Aligned_cols=56 Identities=13% Similarity=0.146 Sum_probs=40.9
Q ss_pred HHHHHHHhhCCCCCChHHHHHH-------hCCCHHHHHHHHHHhccCCcEEEEee--eeEEEEeC
Q 018851 4 EAILGYLEKNEQISDSGNFAAE-------RGFDHNDVVNVIKSLHGFRYIDAQDI--KRETWVLT 59 (349)
Q Consensus 4 ~~iL~~L~~~~~~~~~~~la~~-------~g~~~~~v~~~~~~L~~kgli~~~~~--~~~~~~LT 59 (349)
..||..|.+.+...+.+++.+. .+++...|.+.+..|.+.|+|.--.. ....|.+.
T Consensus 36 ~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i~~~~~~~~Y~~~ 100 (162)
T 4ets_A 36 EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFGSAGKKYELA 100 (162)
T ss_dssp HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEECC-----CCEEEC
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCCceEEEeC
Confidence 5689999876656788887543 36899999999999999999976432 22356664
No 329
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=65.34 E-value=11 Score=30.36 Aligned_cols=46 Identities=13% Similarity=0.101 Sum_probs=34.6
Q ss_pred ChHHHHHHhcCcC--CCCCHHHHHhhc--CchhhhhHHHHHhhCCcEeeC
Q 018851 70 SPEVQLFLAVPAE--GSISKDELQKKL--DPAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 70 ~PE~rl~~~l~~~--g~~~~~el~~~~--~~~~~~ig~g~~~k~~wi~i~ 115 (349)
.+++.++..|... +++++.+|.+.+ .++...-.+..+.++|||...
T Consensus 41 ~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~ 90 (148)
T 3jw4_A 41 SQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERR 90 (148)
T ss_dssp HHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEee
Confidence 3578888888653 679999999875 466777889999999999764
No 330
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=65.03 E-value=15 Score=25.34 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=31.2
Q ss_pred HHHHHhhCCCCCChHHHHHHh-----CCCHHHHHHHHHHhccCCcEEEEe
Q 018851 6 ILGYLEKNEQISDSGNFAAER-----GFDHNDVVNVIKSLHGFRYIDAQD 50 (349)
Q Consensus 6 iL~~L~~~~~~~~~~~la~~~-----g~~~~~v~~~~~~L~~kgli~~~~ 50 (349)
|+..|...+. .+.+++++.+ +++...|.+.++.| |+|.+..
T Consensus 10 i~~ll~~~~~-~t~~el~~~l~~~~~~vs~~Tv~R~L~~l---g~v~~~~ 55 (64)
T 2p5k_A 10 IREIITSNEI-ETQDELVDMLKQDGYKVTQATVSRDIKEL---HLVKVPT 55 (64)
T ss_dssp HHHHHHHSCC-CSHHHHHHHHHHTTCCCCHHHHHHHHHHH---TCEEEEE
T ss_pred HHHHHHcCCC-CCHHHHHHHHHHhCCCcCHHHHHHHHHHc---CCEEEec
Confidence 4556665554 7889999999 99999999999954 6665543
No 331
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=64.98 E-value=5.5 Score=35.01 Aligned_cols=40 Identities=18% Similarity=0.177 Sum_probs=34.3
Q ss_pred CChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEE
Q 018851 17 SDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETW 56 (349)
Q Consensus 17 ~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~ 56 (349)
....+||+.+|++...|..|+..|++.|+|++....-..+
T Consensus 40 L~E~~La~~lgVSRtpVREAl~~L~~eGlv~~~~~~G~~V 79 (222)
T 3ihu_A 40 LVETDLVAHFGVGRNSVREALQRLAAEGIVDLQRHRGAVI 79 (222)
T ss_dssp ECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSTTCEEE
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCeEE
Confidence 3467899999999999999999999999999987654433
No 332
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=64.97 E-value=7.3 Score=35.91 Aligned_cols=43 Identities=9% Similarity=0.101 Sum_probs=34.5
Q ss_pred CCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEE
Q 018851 14 EQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETW 56 (349)
Q Consensus 14 ~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~ 56 (349)
..+-+..+||+.+|++...|..|+..|++.|+|......-..+
T Consensus 51 ~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G~~V 93 (272)
T 3eet_A 51 TRLPSQARIREEYGVSDTVALEARKVLMAEGLVEGRSGSGTYV 93 (272)
T ss_dssp SBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCC--EEE
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCceEEE
Confidence 3344678899999999999999999999999998877655444
No 333
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=64.72 E-value=4.1 Score=38.94 Aligned_cols=59 Identities=24% Similarity=0.244 Sum_probs=48.9
Q ss_pred HHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHHHhhcC
Q 018851 4 EAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAAEG 69 (349)
Q Consensus 4 ~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~l~~G 69 (349)
..||..| . +. .+..+||..+|++...+...++.|.+.|+++... . |.||+.|..++...
T Consensus 46 ~~ll~~L-~-~~-~t~~eLa~~~g~~~~~v~~~L~~l~~~gll~~~~---~-~~lt~~~~~~l~~~ 104 (373)
T 2qm3_A 46 ENVLSAV-L-AS-DDIWRIVDLSEEPLPLVVAILESLNELGYVTFED---G-VKLTEKGEELVAEY 104 (373)
T ss_dssp HHHHHHH-H-HC-SCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECSS---S-SEECHHHHHHHHHH
T ss_pred HHHHHHh-c-CC-CCHHHHHHHhCCChHHHHHHHHHHhhCCcEEECC---C-EEECHHHHHHHHhc
Confidence 3577777 3 33 5789999999999999999999999999998744 2 99999999888763
No 334
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=64.63 E-value=27 Score=27.47 Aligned_cols=45 Identities=9% Similarity=0.034 Sum_probs=36.5
Q ss_pred ChHHHHHHhcCcCCCCCHHHHHhhcC--chhhhhHHHHHhhCCcEeeC
Q 018851 70 SPEVQLFLAVPAEGSISKDELQKKLD--PAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 70 ~PE~rl~~~l~~~g~~~~~el~~~~~--~~~~~ig~g~~~k~~wi~i~ 115 (349)
.++.+++..|. .+++++.+|.+.++ ++...-.+..+.+.|||...
T Consensus 37 ~~~~~iL~~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~ 83 (146)
T 2gxg_A 37 YLDFLVLRATS-DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRV 83 (146)
T ss_dssp HHHHHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHh-cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEee
Confidence 35888898888 77899999998864 55666788999999999763
No 335
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=64.48 E-value=10 Score=37.67 Aligned_cols=24 Identities=13% Similarity=0.379 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhhCCceecCCCCcee
Q 018851 220 KVRKQLKDIFLQMGFEEMPTNNFVE 244 (349)
Q Consensus 220 ~~~~~ir~if~~mGF~e~~~~~~Ve 244 (349)
+++..||++|.+.||.|+.| |.+.
T Consensus 137 ~i~~~iR~ff~~~gFlEVeT-PiL~ 160 (435)
T 2xgt_A 137 AATRAMREHFYNAGYVEVAP-PTLV 160 (435)
T ss_dssp HHHHHHHHHHHHTTCEECCC-CSEE
T ss_pred HHHHHHHHHHHHCCCEEEEC-CeEe
Confidence 57778999999999999986 6664
No 336
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=64.26 E-value=12 Score=29.37 Aligned_cols=45 Identities=11% Similarity=0.148 Sum_probs=36.3
Q ss_pred hHHHHHHhcCcCCCCCHHHHHhhcC--chhhhhHHHHHhhCCcEeeC
Q 018851 71 PEVQLFLAVPAEGSISKDELQKKLD--PAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 71 PE~rl~~~l~~~g~~~~~el~~~~~--~~~~~ig~g~~~k~~wi~i~ 115 (349)
++.+++..|...+++++.+|.+.++ ++...-.+..+-++|||...
T Consensus 39 ~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~ 85 (140)
T 2nnn_A 39 TQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRS 85 (140)
T ss_dssp HHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 4788888886656799999998864 55667788999999999873
No 337
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=64.25 E-value=11 Score=29.49 Aligned_cols=44 Identities=11% Similarity=0.252 Sum_probs=36.3
Q ss_pred hHHHHHHhcCcCCCCCHHHHHhhcC--chhhhhHHHHHhhCCcEee
Q 018851 71 PEVQLFLAVPAEGSISKDELQKKLD--PAVFKIGCSQAGKNKWVEM 114 (349)
Q Consensus 71 PE~rl~~~l~~~g~~~~~el~~~~~--~~~~~ig~g~~~k~~wi~i 114 (349)
++.+++..|...+++++.+|.+.++ ++...-.+..+.++|||..
T Consensus 34 ~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r 79 (139)
T 3bja_A 34 VQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMT 79 (139)
T ss_dssp HHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeee
Confidence 4788888887667799999998854 5667778899999999976
No 338
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=63.78 E-value=7.6 Score=31.75 Aligned_cols=46 Identities=15% Similarity=0.175 Sum_probs=37.6
Q ss_pred ChHHHHHHhcCcCCCCCHHHHHhhc--CchhhhhHHHHHhhCCcEeeC
Q 018851 70 SPEVQLFLAVPAEGSISKDELQKKL--DPAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 70 ~PE~rl~~~l~~~g~~~~~el~~~~--~~~~~~ig~g~~~k~~wi~i~ 115 (349)
.+++.++..|...+++++.+|.+.+ .++...-.+..+-++|||...
T Consensus 50 ~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 97 (159)
T 3s2w_A 50 SGQFPFLMRLYREDGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQ 97 (159)
T ss_dssp TTTHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 4688999988766779999999875 466677788999999999764
No 339
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=63.75 E-value=5.4 Score=40.38 Aligned_cols=25 Identities=12% Similarity=0.239 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhhCCceecCCCCcee
Q 018851 219 LKVRKQLKDIFLQMGFEEMPTNNFVE 244 (349)
Q Consensus 219 ~~~~~~ir~if~~mGF~e~~~~~~Ve 244 (349)
+.+++-+++.+...||+||.+ |.+.
T Consensus 212 ~aL~~f~~d~~~~~Gy~eV~~-P~lv 236 (484)
T 3lss_A 212 VALVSYSLDFLVKRGYTPFYP-PFFL 236 (484)
T ss_dssp HHHHHHHHHHHHTTTCEEEEC-CSEE
T ss_pred HHHHHHHHHHHHHcCCEEEec-Cccc
Confidence 666777888888899999975 6654
No 340
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=63.58 E-value=7.9 Score=33.14 Aligned_cols=34 Identities=12% Similarity=0.119 Sum_probs=31.0
Q ss_pred CChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEe
Q 018851 17 SDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQD 50 (349)
Q Consensus 17 ~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~ 50 (349)
.+-.++|+.+|++.+.|.+.++.|+..|+|+...
T Consensus 178 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~ 211 (227)
T 3d0s_A 178 LTQEEIAQLVGASRETVNKALADFAHRGWIRLEG 211 (227)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEecC
Confidence 4568899999999999999999999999998865
No 341
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=63.01 E-value=19 Score=28.73 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=37.0
Q ss_pred ChHHHHHHhcCcCCCCCHHHHHhhc--CchhhhhHHHHHhhCCcEeeC
Q 018851 70 SPEVQLFLAVPAEGSISKDELQKKL--DPAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 70 ~PE~rl~~~l~~~g~~~~~el~~~~--~~~~~~ig~g~~~k~~wi~i~ 115 (349)
.++..++..|...+++++.+|.+.+ .++...-.+..+-++|||...
T Consensus 40 ~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~ 87 (148)
T 3nrv_A 40 MTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
T ss_dssp HHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 3588889888776779999999875 455677788999999999875
No 342
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=61.79 E-value=7.4 Score=33.73 Aligned_cols=35 Identities=9% Similarity=0.065 Sum_probs=31.3
Q ss_pred CChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee
Q 018851 17 SDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI 51 (349)
Q Consensus 17 ~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~ 51 (349)
.+-.++|+.+|++.+.|.+.++.|+..|+|+....
T Consensus 187 ~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~~~~~ 221 (232)
T 1zyb_A 187 VKMDDLARCLDDTRLNISKTLNELQDNGLIELHRK 221 (232)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEEETT
T ss_pred CCHHHHHHHhCCChhHHHHHHHHHHHCCCEEecCC
Confidence 35688999999999999999999999999988643
No 343
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=61.71 E-value=20 Score=28.36 Aligned_cols=46 Identities=4% Similarity=0.065 Sum_probs=37.1
Q ss_pred ChHHHHHHhcCcCCCCCHHHHHhhcC--chhhhhHHHHHhhCCcEeeC
Q 018851 70 SPEVQLFLAVPAEGSISKDELQKKLD--PAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 70 ~PE~rl~~~l~~~g~~~~~el~~~~~--~~~~~ig~g~~~k~~wi~i~ 115 (349)
.++..++..|...+++++.+|.+.++ ++...-.+..+.++|||...
T Consensus 29 ~~~~~iL~~l~~~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~ 76 (144)
T 1lj9_A 29 RGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQ 76 (144)
T ss_dssp TTHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHCcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 45888898887666799999998854 55666788999999999774
No 344
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=61.66 E-value=8.6 Score=31.55 Aligned_cols=46 Identities=13% Similarity=0.137 Sum_probs=37.1
Q ss_pred ChHHHHHHhcCcCCCCCHHHHHhhcC--chhhhhHHHHHhhCCcEeeC
Q 018851 70 SPEVQLFLAVPAEGSISKDELQKKLD--PAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 70 ~PE~rl~~~l~~~g~~~~~el~~~~~--~~~~~ig~g~~~k~~wi~i~ 115 (349)
.++.+++..|...+++++.+|.+.++ ++...-.+..+-++|||...
T Consensus 53 ~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~ 100 (161)
T 3e6m_A 53 TPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARS 100 (161)
T ss_dssp HHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 45888888887656799999998854 55667788999999999874
No 345
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=61.42 E-value=12 Score=38.27 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhhCCceecCCCCceee
Q 018851 220 KVRKQLKDIFLQMGFEEMPTNNFVES 245 (349)
Q Consensus 220 ~~~~~ir~if~~mGF~e~~~~~~Ves 245 (349)
+++..||++|.+.||.|+.| |.+.+
T Consensus 209 ~i~~~iR~ff~~~gFlEVeT-PiL~~ 233 (529)
T 4ex5_A 209 KAIASIRKFMGDADFMEVET-PMLHP 233 (529)
T ss_dssp HHHHHHHHHHHHTTCEECCC-CSEES
T ss_pred HHHHHHHHHHHHCCCEEEeC-Ceeec
Confidence 66778899999999999986 77753
No 346
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=61.30 E-value=5.4 Score=38.57 Aligned_cols=67 Identities=7% Similarity=0.037 Sum_probs=46.3
Q ss_pred HHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHHHhhcCCh
Q 018851 4 EAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAAEGSP 71 (349)
Q Consensus 4 ~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~l~~G~P 71 (349)
.+||..|..... .+..++++.+|++...+.++++.|.+.|+|.........+-.-.+=-+.+.+|.+
T Consensus 300 ~~ll~~l~~~p~-~t~~~~~~~~gvS~~Ta~r~L~~L~e~GiL~~~~~gR~~~y~~~~~~~~l~~~~~ 366 (373)
T 2qc0_A 300 HELVQVIFEQPY-CRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQSGKEKLFVHPKFVTLMTKDSN 366 (373)
T ss_dssp HHHHHHHHHCSE-EEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC--CCSCEEECHHHHHHHHSSCC
T ss_pred HHHHHHHHhCCc-ccHHHHHHHhCCCHHHHHHHHHHHHHCCcEEEecCCCceEEehHHHHHHHccCCc
Confidence 456677765543 5677899999999999999999999999997655444444444444444444443
No 347
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=61.29 E-value=11 Score=33.83 Aligned_cols=61 Identities=13% Similarity=0.096 Sum_probs=43.9
Q ss_pred HHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccC-CcEEEEeeee-----EEEEeChhHHHHhhc
Q 018851 4 EAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGF-RYIDAQDIKR-----ETWVLTGEGKKYAAE 68 (349)
Q Consensus 4 ~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~k-gli~~~~~~~-----~~~~LTeEG~~~l~~ 68 (349)
.+++.++...+. ...-|+.+|+++..+.+.++.|+.. |. ..-.+.. ....||+.|+.++..
T Consensus 25 l~~f~~v~~~gs---~~~aa~~l~~s~~~~s~~i~~le~~lg~-~L~~R~~~~lsg~~~~lt~~g~~l~~~ 91 (265)
T 1b9m_A 25 ISLLKHIALSGS---ISQGAKDAGISYKSAWDAINEMNQLSEH-ILVERATGGKGGGGAVLTRYGQRLIQL 91 (265)
T ss_dssp HHHHHHHHHHSS---HHHHHHHHTCCHHHHHHHHHHHHHHHTS-CCEEECCCC-----EEECHHHHHHHHH
T ss_pred HHHHHHHHHhCC---HHHHHHHhCCCHHHHHHHHHHHHHHhCC-CeEEecCCCCCCCceEECHHHHHHHHH
Confidence 345666666653 4567888999999999999999995 65 3333333 478999999998854
No 348
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=61.12 E-value=12 Score=29.52 Aligned_cols=46 Identities=9% Similarity=0.035 Sum_probs=36.3
Q ss_pred ChHHHHHHhcCcCC--CCCHHHHHhhc--CchhhhhHHHHHhhCCcEeeC
Q 018851 70 SPEVQLFLAVPAEG--SISKDELQKKL--DPAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 70 ~PE~rl~~~l~~~g--~~~~~el~~~~--~~~~~~ig~g~~~k~~wi~i~ 115 (349)
.++..++..|...+ ++++.+|.+.+ .++...-.+..+.++|||...
T Consensus 31 ~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~ 80 (139)
T 3eco_A 31 NEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRY 80 (139)
T ss_dssp HHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeec
Confidence 35888888886543 78999999885 455677788999999999764
No 349
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=60.96 E-value=6.1 Score=33.70 Aligned_cols=34 Identities=9% Similarity=0.036 Sum_probs=30.8
Q ss_pred ChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee
Q 018851 18 DSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI 51 (349)
Q Consensus 18 ~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~ 51 (349)
+-.++|..+|++.+.|.+.++.|+..|+|.....
T Consensus 180 t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~ 213 (227)
T 3dkw_A 180 AKQLVAGHLSIQPETFSRIMHRLGDEGIIHLDGR 213 (227)
T ss_dssp CTHHHHHHTTSCHHHHHHHHHHHHHHTSEEESSS
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHCCcEEecCC
Confidence 4589999999999999999999999999988643
No 350
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=60.80 E-value=11 Score=32.21 Aligned_cols=49 Identities=10% Similarity=0.180 Sum_probs=40.3
Q ss_pred CChHHHHHHhC--------------CCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHHHhh
Q 018851 17 SDSGNFAAERG--------------FDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAA 67 (349)
Q Consensus 17 ~~~~~la~~~g--------------~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~l~ 67 (349)
....+||+.+| ++...|..|+..|++.|+|..... .-..+|+.|.+-+.
T Consensus 68 ~G~~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~~~--~G~~Vt~~~~~~l~ 130 (150)
T 2v7f_A 68 VGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPG--KGRVITPKGRSFLD 130 (150)
T ss_dssp BCHHHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEETT--TEEEECHHHHHHHH
T ss_pred CCHHHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHHCCCEEEeCC--CceEECCCCHHHHH
Confidence 44589999999 999999999999999999987643 34567888877553
No 351
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=60.74 E-value=14 Score=34.39 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=33.7
Q ss_pred hCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee
Q 018851 12 KNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI 51 (349)
Q Consensus 12 ~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~ 51 (349)
..+. .+..++|+.+|++...|.+.+..|+..|+|++...
T Consensus 18 ~~~~-~~~~ela~~l~vS~~tIrRdL~~l~~~G~v~iri~ 56 (315)
T 2w48_A 18 YEQD-MTQAQIARELGIYRTTISRLLKRGREQGIVTIAIN 56 (315)
T ss_dssp HTSC-CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HcCC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEec
Confidence 3444 67899999999999999999999999999986554
No 352
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=60.40 E-value=9.6 Score=30.72 Aligned_cols=45 Identities=13% Similarity=0.029 Sum_probs=36.3
Q ss_pred ChHHHHHHhcCcCCCCCHHHHHhhcC--chhhhhHHHHHhhCCcEee
Q 018851 70 SPEVQLFLAVPAEGSISKDELQKKLD--PAVFKIGCSQAGKNKWVEM 114 (349)
Q Consensus 70 ~PE~rl~~~l~~~g~~~~~el~~~~~--~~~~~ig~g~~~k~~wi~i 114 (349)
.++..++..|...+++++.+|.+.++ ++...-.+..+.++|||..
T Consensus 41 ~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 41 IQQLAMINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 34788888887667799999998854 5566667899999999987
No 353
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=60.20 E-value=13 Score=29.69 Aligned_cols=45 Identities=7% Similarity=0.034 Sum_probs=36.5
Q ss_pred hHHHHHHhcCcCCCCCHHHHHhhc--CchhhhhHHHHHhhCCcEeeC
Q 018851 71 PEVQLFLAVPAEGSISKDELQKKL--DPAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 71 PE~rl~~~l~~~g~~~~~el~~~~--~~~~~~ig~g~~~k~~wi~i~ 115 (349)
++.+++..|...+++++.+|.+.+ .++...-.+..+.++|||...
T Consensus 41 ~~~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~ 87 (152)
T 3bj6_A 41 GQRAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQRAGLIERR 87 (152)
T ss_dssp HHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeec
Confidence 488888888766679999999885 455667788999999999774
No 354
>3aaf_A Werner syndrome ATP-dependent helicase; helix-turn-helix, winged-helix, protein-DNA complex, DNA-BIN helicase; HET: DNA; 1.90A {Homo sapiens} PDB: 2axl_A
Probab=59.30 E-value=6.9 Score=32.56 Aligned_cols=46 Identities=11% Similarity=0.079 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHhccCCcEEEEeeee---EEEEeChhHHHHhhcCChH
Q 018851 27 GFDHNDVVNVIKSLHGFRYIDAQDIKR---ETWVLTGEGKKYAAEGSPE 72 (349)
Q Consensus 27 g~~~~~v~~~~~~L~~kgli~~~~~~~---~~~~LTeEG~~~l~~G~PE 72 (349)
+++...+.+.+..|.+.|++..+.... ..+.||+.|+++|++...|
T Consensus 64 ~~s~~~w~~lirqLi~~G~L~~~~~~~~~~~~L~Lt~~g~~vL~~~~~~ 112 (134)
T 3aaf_A 64 DQTESWWKAFSRQLITEGFLVEVSRYNKFMKICALTKKGRNWLHKANTE 112 (134)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEECSSTTCEEEEECHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHHcCCceeecCcCccCceEEECHHHHHHHhCCccC
Confidence 367788999999999999999876332 2499999999999887654
No 355
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=59.25 E-value=6.9 Score=33.54 Aligned_cols=35 Identities=20% Similarity=0.127 Sum_probs=31.3
Q ss_pred CChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee
Q 018851 17 SDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI 51 (349)
Q Consensus 17 ~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~ 51 (349)
.+-.++|+.+|++.+.|.++++.|+..|+|+....
T Consensus 164 ~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~~~~ 198 (222)
T 1ft9_A 164 FTVEEIANLIGSSRQTTSTALNSLIKEGYISRQGR 198 (222)
T ss_dssp CCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEECST
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEEcCC
Confidence 35688999999999999999999999999988654
No 356
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=59.24 E-value=12 Score=29.81 Aligned_cols=45 Identities=18% Similarity=0.147 Sum_probs=36.2
Q ss_pred hHHHHHHhcCcCCCCCHHHHHhhcC--chhhhhHHHHHhhCCcEeeC
Q 018851 71 PEVQLFLAVPAEGSISKDELQKKLD--PAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 71 PE~rl~~~l~~~g~~~~~el~~~~~--~~~~~ig~g~~~k~~wi~i~ 115 (349)
++.+++..|...+++++.+|.+.++ ++...-.+..+.++|||...
T Consensus 43 ~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~ 89 (150)
T 2rdp_A 43 PQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARV 89 (150)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeec
Confidence 4788888887656799999998854 55666788999999999763
No 357
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=59.06 E-value=16 Score=29.57 Aligned_cols=45 Identities=9% Similarity=0.116 Sum_probs=36.1
Q ss_pred hHHHHHHhcCcCCCCCHHHHHhhcC--chhhhhHHHHHhhCCcEeeC
Q 018851 71 PEVQLFLAVPAEGSISKDELQKKLD--PAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 71 PE~rl~~~l~~~g~~~~~el~~~~~--~~~~~ig~g~~~k~~wi~i~ 115 (349)
++.+++..|...+++++.+|.+.++ ++...-.+..+.++|||...
T Consensus 50 ~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~ 96 (162)
T 2fa5_A 50 PEWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRE 96 (162)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeee
Confidence 5788888887667799999998864 55666788999999999874
No 358
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=58.73 E-value=15 Score=29.79 Aligned_cols=46 Identities=20% Similarity=0.118 Sum_probs=36.9
Q ss_pred ChHHHHHHhcCcCCCCCHHHHHhhcC--chhhhhHHHHHhhCCcEeeC
Q 018851 70 SPEVQLFLAVPAEGSISKDELQKKLD--PAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 70 ~PE~rl~~~l~~~g~~~~~el~~~~~--~~~~~ig~g~~~k~~wi~i~ 115 (349)
.++.+++..|...+++++.+|.+.++ ++...-.+..+.++|||...
T Consensus 44 ~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~ 91 (154)
T 2eth_A 44 TTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVRE 91 (154)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 45888898887656799999998864 55666788999999999763
No 359
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=58.68 E-value=0.21 Score=48.14 Aligned_cols=51 Identities=16% Similarity=0.155 Sum_probs=39.4
Q ss_pred HHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeCh
Q 018851 9 YLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTG 60 (349)
Q Consensus 9 ~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTe 60 (349)
+|-..+. .+..++|+.+|++...|..++++|+.+|+|.........|...+
T Consensus 26 ~Ll~~g~-~t~~eia~~~gv~~~~Vy~~L~~L~~~GlV~~~~g~p~~y~av~ 76 (342)
T 3qph_A 26 TLLVYGP-STAKEISTKSGIPYNRVYDTISSLKLRGFVTEIEGTPKVYAAYS 76 (342)
T ss_dssp HHHHHHH-HHHSCCSSSTTSSSCSCCHHHHHHHHHTSEEEECCTTCEEEECC
T ss_pred HHHHcCC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcCceeEEEEcC
Confidence 3333443 45678999999999999999999999999998765555666554
No 360
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=58.40 E-value=16 Score=37.50 Aligned_cols=25 Identities=12% Similarity=0.133 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhCCceecCCCCceee
Q 018851 220 KVRKQLKDIFLQMGFEEMPTNNFVES 245 (349)
Q Consensus 220 ~~~~~ir~if~~mGF~e~~~~~~Ves 245 (349)
.++..||++|.+.||.|+.| |.+.+
T Consensus 249 ~i~~~iR~ff~~~gF~EVeT-PiL~~ 273 (548)
T 3i7f_A 249 ACCGLFREFLTSQKFVEIHT-PKLIG 273 (548)
T ss_dssp HHHHHHHHHHHHTTCEECCC-CSBC-
T ss_pred HHHHHHHHHHHhCCCEEEeC-CEEec
Confidence 45666799999999999986 66643
No 361
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=58.37 E-value=23 Score=30.11 Aligned_cols=69 Identities=14% Similarity=0.163 Sum_probs=50.8
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHh-----CCCHHHHHHHHHHhccCCcEEEEeee-eEEEEeChhHHHHhhcCChHHHHH
Q 018851 3 EEAILGYLEKNEQISDSGNFAAER-----GFDHNDVVNVIKSLHGFRYIDAQDIK-RETWVLTGEGKKYAAEGSPEVQLF 76 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~-----g~~~~~v~~~~~~L~~kgli~~~~~~-~~~~~LTeEG~~~l~~G~PE~rl~ 76 (349)
...|+..|.+.+. .+.++|++.+ +++...|.+.++.| |++++.... ...|.|-+++. ..|+.++.
T Consensus 7 ~~~I~~li~~~~~-~tq~eL~~~L~~~G~~VtqaTisRDL~eL---~~vKv~~~~g~~~Y~lp~~~~-----~~~~~~l~ 77 (149)
T 1b4a_A 7 HIKIREIIMSNDI-ETQDELVDRLREAGFNVTQATVSRDIKEM---QLVKVPMANGRYKYSLPSDQR-----FNPLQKLK 77 (149)
T ss_dssp HHHHHHHHHHSCC-CSHHHHHHHHHHTTCCCCHHHHHHHHHHT---TCEEEECSSSCEEEECTTCSS-----SCHHHHHH
T ss_pred HHHHHHHHHHCCC-ccHHHHHHHHHHcCCCcCHHHHHHHHHHc---CCeEEECCCCCEEEEeCCCCC-----cchHHHHH
Confidence 4568888887775 7889999988 89999999999988 578886543 35788866542 24666666
Q ss_pred HhcC
Q 018851 77 LAVP 80 (349)
Q Consensus 77 ~~l~ 80 (349)
..+.
T Consensus 78 ~~~~ 81 (149)
T 1b4a_A 78 RALV 81 (149)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 362
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=58.25 E-value=7.7 Score=28.22 Aligned_cols=45 Identities=9% Similarity=0.090 Sum_probs=35.0
Q ss_pred hHHHHHHhcCcCCC-CCHHHHHhhc--CchhhhhHHHHHhhCCcEeeC
Q 018851 71 PEVQLFLAVPAEGS-ISKDELQKKL--DPAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 71 PE~rl~~~l~~~g~-~~~~el~~~~--~~~~~~ig~g~~~k~~wi~i~ 115 (349)
.|..|++.|..+|+ +.++.+.+.. .+++.--++..+.++|.|++.
T Consensus 11 ~e~~lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~KGLI~le 58 (59)
T 2xvc_A 11 TERELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIAVE 58 (59)
T ss_dssp CHHHHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cHHHHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCeecc
Confidence 48889999987665 4788888774 455666688899999999875
No 363
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=58.06 E-value=16 Score=37.07 Aligned_cols=25 Identities=20% Similarity=0.429 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhhCCceecCCCCceee
Q 018851 220 KVRKQLKDIFLQMGFEEMPTNNFVES 245 (349)
Q Consensus 220 ~~~~~ir~if~~mGF~e~~~~~~Ves 245 (349)
+++..||++|.+.||.|+.| |.+.+
T Consensus 181 ~i~~~iR~f~~~~gF~EVeT-PiL~~ 205 (521)
T 3bju_A 181 KIITYIRSFLDELGFLEIET-PMMNI 205 (521)
T ss_dssp HHHHHHHHHHHHTTCEECCC-CSEES
T ss_pred HHHHHHHHHHHHCCCEEEeC-ceeec
Confidence 46678999999999999986 77754
No 364
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=58.04 E-value=24 Score=28.54 Aligned_cols=46 Identities=7% Similarity=0.031 Sum_probs=37.2
Q ss_pred ChHHHHHHhcCcCCCCCHHHHHhhcC--chhhhhHHHHHhhCCcEeeC
Q 018851 70 SPEVQLFLAVPAEGSISKDELQKKLD--PAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 70 ~PE~rl~~~l~~~g~~~~~el~~~~~--~~~~~ig~g~~~k~~wi~i~ 115 (349)
.++..++..|...+++++.+|.+.++ ++...-.+..+.++|||...
T Consensus 52 ~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~ 99 (162)
T 3cjn_A 52 TAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRRE 99 (162)
T ss_dssp HHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEec
Confidence 35888888887667799999998854 55667788999999999764
No 365
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=57.86 E-value=9.6 Score=33.13 Aligned_cols=47 Identities=17% Similarity=0.126 Sum_probs=36.7
Q ss_pred CChHHHHHHhCCCH-HHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHHH
Q 018851 17 SDSGNFAAERGFDH-NDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKY 65 (349)
Q Consensus 17 ~~~~~la~~~g~~~-~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~ 65 (349)
.+-.++|+.+|++. +.|.+.++.|+..|+|+.... ....+-.++.+-
T Consensus 170 ~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~~~~--~i~I~d~~~L~~ 217 (238)
T 2bgc_A 170 LTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNS--CFYVQNLDYLKR 217 (238)
T ss_dssp CCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEETT--EEEESCHHHHHH
T ss_pred CCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEecCC--EEEEeCHHHHHH
Confidence 56689999999999 799999999999999988753 233444445443
No 366
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=57.31 E-value=2.3 Score=34.73 Aligned_cols=39 Identities=13% Similarity=-0.008 Sum_probs=32.4
Q ss_pred ChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEE
Q 018851 18 DSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETW 56 (349)
Q Consensus 18 ~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~ 56 (349)
+..+||+.+|++...|..|+..|++.|+|......-.++
T Consensus 37 s~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~~~G~~V 75 (126)
T 3ic7_A 37 SVREYASIVEVNANTVMRSYEYLQSQEVIYNKRGIGFFV 75 (126)
T ss_dssp CTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEETTTEEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEcCCccEE
Confidence 556899999999999999999999999998877655443
No 367
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=57.26 E-value=11 Score=30.41 Aligned_cols=103 Identities=12% Similarity=0.053 Sum_probs=64.6
Q ss_pred HHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHHHhhcCChHHHHHHhcCcCC
Q 018851 4 EAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAAEGSPEVQLFLAVPAEG 83 (349)
Q Consensus 4 ~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~l~~G~PE~rl~~~l~~~g 83 (349)
.+|+..+.+ . +.+..++|..+|++...+...+..|...|.|.--. ...|..++-=.+++ ..+...+..+|
T Consensus 10 ~~i~~~~~~-~-p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~i~--~~~~~~~~~~~~~~------~~l~~~~~~~~ 79 (121)
T 2pjp_A 10 QKAEPLFGD-E-PWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIV--KDRYYRNDRIVEFA------NMIRDLDQECG 79 (121)
T ss_dssp HHHGGGCSS-S-CEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE--TTEEEEHHHHHHHH------HHHHHHHHHHS
T ss_pred HHHHHHHHh-C-CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEec--CCceECHHHHHHHH------HHHHHHHHHCC
Confidence 445555543 2 24678999999999999999999999999664322 33444443333322 34555666667
Q ss_pred CCCHHHHHhhcCchh-hhhHH-HHHhhCCcEeeCc
Q 018851 84 SISKDELQKKLDPAV-FKIGC-SQAGKNKWVEMGK 116 (349)
Q Consensus 84 ~~~~~el~~~~~~~~-~~ig~-g~~~k~~wi~i~~ 116 (349)
++++.+++..+|-+. +.|.+ -.+=+.|+.+..+
T Consensus 80 ~it~ae~Rd~lg~sRK~ai~lLE~~Dr~g~TrR~g 114 (121)
T 2pjp_A 80 STCAADFRDRLGVGRKLAIQILEYFDRIGFTRRRG 114 (121)
T ss_dssp SEEHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEET
T ss_pred CccHHHHHHHHCCcHHHHHHHHHHHhhcCCeEeeC
Confidence 799999998876331 12222 3445566654433
No 368
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=57.09 E-value=2.2 Score=37.31 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccC-CcEEEEeeeeEEEEeChhHHHHhhcC
Q 018851 6 ILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGF-RYIDAQDIKRETWVLTGEGKKYAAEG 69 (349)
Q Consensus 6 iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~k-gli~~~~~~~~~~~LTeEG~~~l~~G 69 (349)
++.++.+.+. .-.-|+.+++++.+|.+.++.||.. |.- .-.+....+.||++|+.++..-
T Consensus 5 ~f~~v~~~~s---~s~AA~~L~isq~avS~~i~~LE~~lg~~-Lf~R~~~~~~lT~~G~~l~~~a 65 (300)
T 3mz1_A 5 AFLRVVETGN---FTRASASLNMPKATVTNLIQGLEAHLRTK-LLNRTTRRVLVTPDGALYYERA 65 (300)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHHHhcCC---HHHHHHHhCCCHHHHHHHHHHHHHHhCCe-eEecCCCceeeCHhHHHHHHHH
Confidence 4444554543 3356788999999999999999996 543 3344566899999999987553
No 369
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=56.17 E-value=2.4 Score=38.30 Aligned_cols=60 Identities=10% Similarity=-0.021 Sum_probs=0.0
Q ss_pred HHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccC-CcEEEEeeeeEEEEeChhHHHHhhcC
Q 018851 6 ILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGF-RYIDAQDIKRETWVLTGEGKKYAAEG 69 (349)
Q Consensus 6 iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~k-gli~~~~~~~~~~~LTeEG~~~l~~G 69 (349)
++.++.+.+. ...-|+.+++++.+|.+.++.||+. |.- .-.+....+.||++|+.++...
T Consensus 8 ~F~~va~~gs---~s~AA~~L~isq~avS~~I~~LE~~lg~~-Lf~R~~r~~~lT~~G~~l~~~a 68 (312)
T 2h9b_A 8 YFVAVVEEQS---FTKAADKLCIAQPPLSRQIQNLEEELGIQ-LLERGSRPVKTTPEGHFFYQYA 68 (312)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHHHHhCC---HHHHHHHhcCCccHHHHHHHHHHHHhCCE-eEeeCCCCceECHHHHHHHHHH
Confidence 3344444443 3356788999999999999999996 433 3345566899999999987554
No 370
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=56.01 E-value=6.4 Score=29.01 Aligned_cols=47 Identities=19% Similarity=0.214 Sum_probs=35.9
Q ss_pred ChHHHHHHhcCcCCCCCHHHHHhhcC------chhhhhHHHHHhhCCcEeeCc
Q 018851 70 SPEVQLFLAVPAEGSISKDELQKKLD------PAVFKIGCSQAGKNKWVEMGK 116 (349)
Q Consensus 70 ~PE~rl~~~l~~~g~~~~~el~~~~~------~~~~~ig~g~~~k~~wi~i~~ 116 (349)
.+|..++.+|-..++++..||.+.++ ++...--+..+.++|||....
T Consensus 9 ~~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 9 DAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp HHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEe
Confidence 45888899997667799999988764 345556778999999997643
No 371
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=55.94 E-value=30 Score=27.81 Aligned_cols=45 Identities=11% Similarity=0.025 Sum_probs=36.2
Q ss_pred hHHHHHHhc-CcCCCCCHHHHHhhc--CchhhhhHHHHHhhCCcEeeC
Q 018851 71 PEVQLFLAV-PAEGSISKDELQKKL--DPAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 71 PE~rl~~~l-~~~g~~~~~el~~~~--~~~~~~ig~g~~~k~~wi~i~ 115 (349)
++..++..| ...+++++.+|.+.+ .++...-.+..+.++|||...
T Consensus 48 ~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~ 95 (160)
T 3boq_A 48 AKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKA 95 (160)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 488889898 455679999999885 455677788999999999874
No 372
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=55.60 E-value=2.4 Score=39.30 Aligned_cols=58 Identities=9% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCC--CCCChHHHHHHh-CCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeCh
Q 018851 2 AEEAILGYLEKNE--QISDSGNFAAER-GFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTG 60 (349)
Q Consensus 2 ~e~~iL~~L~~~~--~~~~~~~la~~~-g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTe 60 (349)
++.+||..|+... .-.+.+++++.+ +++.++|..++..|.+.|+| ........|..|+
T Consensus 208 ~~~~Vl~~i~~~~~~~Gi~~~~I~~~l~~~~~~~v~~al~~L~~eG~I-YsTiDd~h~k~t~ 268 (270)
T 2pi2_A 208 AQNQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHI-YSTVDDDHFKSTD 268 (270)
T ss_dssp --------------------------------------------------------------
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHhcCCCHHHHHHHHHHHHhCCEE-eccccccceeecc
Confidence 4567888887642 224567888877 79999999999999999999 6666666777665
No 373
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=54.95 E-value=2.5 Score=38.22 Aligned_cols=48 Identities=15% Similarity=-0.023 Sum_probs=0.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHhccC-CcEEEEeeeeEEEEeChhHHHHhhc
Q 018851 20 GNFAAERGFDHNDVVNVIKSLHGF-RYIDAQDIKRETWVLTGEGKKYAAE 68 (349)
Q Consensus 20 ~~la~~~g~~~~~v~~~~~~L~~k-gli~~~~~~~~~~~LTeEG~~~l~~ 68 (349)
-.-|+.+++++.+|.+.++.||+. |.- .-.+....+.||++|+.++..
T Consensus 32 t~AA~~L~isq~avS~~I~~LE~~lg~~-Lf~R~~r~~~lT~~G~~l~~~ 80 (315)
T 1uth_A 32 STAGEKLGLTQPAVSNSLKRLRTALNDD-LFLRTSKGMEPTPYALHLAEP 80 (315)
T ss_dssp --------------------------------------------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhCCc-ceeecCCCccCCHHHHHHHHH
Confidence 356788999999999999999996 433 334556789999999998754
No 374
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=54.85 E-value=8.9 Score=29.24 Aligned_cols=46 Identities=13% Similarity=0.101 Sum_probs=36.4
Q ss_pred hHHHHHHhcCcCC---CCCHHHHHhhcC--chhhhhHHHHHhhCCcEeeCc
Q 018851 71 PEVQLFLAVPAEG---SISKDELQKKLD--PAVFKIGCSQAGKNKWVEMGK 116 (349)
Q Consensus 71 PE~rl~~~l~~~g---~~~~~el~~~~~--~~~~~ig~g~~~k~~wi~i~~ 116 (349)
.+.+|+.+|.+++ .++..+|.+.+| ....+-.|..+.+.|+|...+
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g 61 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEA 61 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEES
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecC
Confidence 4778999997655 689999999876 445566788999999998644
No 375
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=54.48 E-value=71 Score=29.15 Aligned_cols=99 Identities=12% Similarity=-0.001 Sum_probs=65.4
Q ss_pred CCCCCChHHHHHHh----CCCHHHHHHHHHHhcc-CCcEEEEeeeeEEEEeChhHHHHhhcCChHHHHHHhcCcCCCCCH
Q 018851 13 NEQISDSGNFAAER----GFDHNDVVNVIKSLHG-FRYIDAQDIKRETWVLTGEGKKYAAEGSPEVQLFLAVPAEGSISK 87 (349)
Q Consensus 13 ~~~~~~~~~la~~~----g~~~~~v~~~~~~L~~-kgli~~~~~~~~~~~LTeEG~~~l~~G~PE~rl~~~l~~~g~~~~ 87 (349)
+|.+.+..++-..+ -+++++|.+|++.|+. .|+-.+.-.....+...+-- -..=--++++++...|.++.
T Consensus 110 nGGli~l~el~~~~~r~~~IS~dDi~rAik~L~~L~gf~v~~v~g~~~vqsvp~e-----l~~D~~~vLe~a~~~g~vt~ 184 (233)
T 1u5t_A 110 NGGVISFQELEKVHFRKLNVGLDDLEKSIDMLKSLECFEIFQIRGKKFLRSVPNE-----LTSDQTKILEICSILGYSSI 184 (233)
T ss_dssp SSSCEEHHHHHHTTTTTTTCCHHHHHHHHHHHTTTCCCCEEEETTEEEECCSSSC-----CCTTHHHHHHTTTTTSCCBH
T ss_pred cCCeeEHHHHHHHHHhhcCCCHHHHHHHHHHhhhccCeEEEEECCEEEEEeCCCc-----cchHHHHHHHHHHhcCcCcH
Confidence 45556666665554 5799999999999998 56655543333333333211 11223455666665677899
Q ss_pred HHHHhhcC--chhhhhHHHHHhhCCcEeeCc
Q 018851 88 DELQKKLD--PAVFKIGCSQAGKNKWVEMGK 116 (349)
Q Consensus 88 ~el~~~~~--~~~~~ig~g~~~k~~wi~i~~ 116 (349)
++|...+| ...++-+|-.+.+.|.+=+|.
T Consensus 185 ~~L~~~lgW~~~Ra~~~L~~l~~~G~lwvD~ 215 (233)
T 1u5t_A 185 SLLKANLGWEAVRSKSALDEMVANGLLWIDY 215 (233)
T ss_dssp HHHHHHHCCCSHHHHHHHHHHHHTTSSEEEC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 99998764 567888999999999655553
No 376
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=54.34 E-value=26 Score=21.99 Aligned_cols=37 Identities=3% Similarity=-0.111 Sum_probs=27.9
Q ss_pred HHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCC
Q 018851 5 AILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFR 44 (349)
Q Consensus 5 ~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kg 44 (349)
.|+..+ ..+ .+..++|+.+|++...|.+.++..+..|
T Consensus 13 ~i~~~~-~~g--~s~~~IA~~lgis~~Tv~~~~~~~~~~g 49 (51)
T 1tc3_C 13 QLDVMK-LLN--VSLHEMSRKISRSRHCIRVYLKDPVSYG 49 (51)
T ss_dssp HHHHHH-HTT--CCHHHHHHHHTCCHHHHHHHHHCSTTTT
T ss_pred HHHHHH-HcC--CCHHHHHHHHCcCHHHHHHHHhhHHhcC
Confidence 345444 344 3678999999999999999988777655
No 377
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=53.94 E-value=20 Score=28.68 Aligned_cols=46 Identities=7% Similarity=0.059 Sum_probs=35.3
Q ss_pred ChHHHHHHhcCc-CCCCCHHHHHhhc--CchhhhhHHHHHhhCCcEeeC
Q 018851 70 SPEVQLFLAVPA-EGSISKDELQKKL--DPAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 70 ~PE~rl~~~l~~-~g~~~~~el~~~~--~~~~~~ig~g~~~k~~wi~i~ 115 (349)
.++..++..|.. .+++++.+|.+.+ .++...-.+..+-++|||...
T Consensus 39 ~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~ 87 (150)
T 3fm5_A 39 VRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRT 87 (150)
T ss_dssp HHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 358888888853 3458999999885 456677788999999999764
No 378
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=53.80 E-value=23 Score=28.79 Aligned_cols=46 Identities=9% Similarity=0.189 Sum_probs=35.0
Q ss_pred ChHHHHHHhcC--cCCCCCHHHHHhhc--CchhhhhHHHHHhhCCcEeeC
Q 018851 70 SPEVQLFLAVP--AEGSISKDELQKKL--DPAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 70 ~PE~rl~~~l~--~~g~~~~~el~~~~--~~~~~~ig~g~~~k~~wi~i~ 115 (349)
.++++++..|. ++|++++.+|.+.+ .++...-.+..+-++|||...
T Consensus 35 ~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~ 84 (147)
T 4b8x_A 35 FARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKR 84 (147)
T ss_dssp HHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEe
Confidence 45788887773 34568999999875 455666788999999999763
No 379
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=52.89 E-value=47 Score=29.81 Aligned_cols=103 Identities=18% Similarity=0.165 Sum_probs=64.9
Q ss_pred HhhCCCCCChHHHHHHh----C---CCHHHHHHHHHHhccCCc-EEEEeee--eEEEEeChhHHHHhhcCChHHHHHHhc
Q 018851 10 LEKNEQISDSGNFAAER----G---FDHNDVVNVIKSLHGFRY-IDAQDIK--RETWVLTGEGKKYAAEGSPEVQLFLAV 79 (349)
Q Consensus 10 L~~~~~~~~~~~la~~~----g---~~~~~v~~~~~~L~~kgl-i~~~~~~--~~~~~LTeEG~~~l~~G~PE~rl~~~l 79 (349)
+...+.+.+..++=..+ | ++++++.+|++.|+..|+ +.+.... ...+...+.=- + .=-.+|++++
T Consensus 89 ~~~~GG~I~L~dl~~~~nraRG~~lVSp~Dl~~A~~~l~~Lg~~~~l~~~~sg~~vvqs~~~~~----~-~~~~~il~~~ 163 (218)
T 3cuq_B 89 LEERGGIMSLTEVYCLVNRARGMELLSPEDLVNACKMLEALKLPLRLRVFDSGVMVIELQSHKE----E-EMVASALETV 163 (218)
T ss_dssp HHHTTSEEEHHHHHHHHHHTCSSSCCCHHHHHHHHHTTTTTTCSEEEEECTTSBEEEEETTCCG----G-GGHHHHHHHH
T ss_pred HHhCCCeEEHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEEEECCCcEEEEcCCCch----H-HHHHHHHHHH
Confidence 34455555665554333 3 899999999999999765 4444432 22333332100 0 1123556666
Q ss_pred CcCCCCCHHHHHhhcC--chhhhhHHHHHhhCCcEeeCce
Q 018851 80 PAEGSISKDELQKKLD--PAVFKIGCSQAGKNKWVEMGKQ 117 (349)
Q Consensus 80 ~~~g~~~~~el~~~~~--~~~~~ig~g~~~k~~wi~i~~~ 117 (349)
...|.++..+|...+| ...+.-.|-.|.+.|.+=+|.+
T Consensus 164 ~~~g~vt~~~la~~l~ws~~~a~e~L~~~e~~G~l~~D~~ 203 (218)
T 3cuq_B 164 SEKGSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLCRDDS 203 (218)
T ss_dssp HHTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEES
T ss_pred HHCCCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 6567799999998865 4456677888999998877754
No 380
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=52.74 E-value=21 Score=30.63 Aligned_cols=51 Identities=14% Similarity=0.077 Sum_probs=36.7
Q ss_pred ChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHHHhhcCCh
Q 018851 18 DSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAAEGSP 71 (349)
Q Consensus 18 ~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~l~~G~P 71 (349)
+-.++|..+|++.+.|.+.++.|+..|+ .. .......+-.++.+-+..+.|
T Consensus 180 t~~~iA~~lg~sr~tvsR~l~~L~~~gi-~~--~~~~i~I~d~~~L~~~~~~~~ 230 (237)
T 3fx3_A 180 DKMLIAGRLGMKPESLSRAFSRLKAAGV-TV--KRNHAEIEDIALLRDYAESDP 230 (237)
T ss_dssp CTHHHHHHTTCCHHHHHHHHHHHGGGTE-EC--CTTEEEESCHHHHHHHHCC--
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHCCe-Ee--eCCEEEEcCHHHHHHHhcCCc
Confidence 4578999999999999999999999994 33 233455556666655555444
No 381
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=52.16 E-value=30 Score=29.35 Aligned_cols=45 Identities=16% Similarity=0.238 Sum_probs=36.0
Q ss_pred ChHHHHHHhcCc--CCCCCHHHHHhhc--CchhhhhHHHHHhhCCcEee
Q 018851 70 SPEVQLFLAVPA--EGSISKDELQKKL--DPAVFKIGCSQAGKNKWVEM 114 (349)
Q Consensus 70 ~PE~rl~~~l~~--~g~~~~~el~~~~--~~~~~~ig~g~~~k~~wi~i 114 (349)
.+++.++..|.. .+++++.+|.+.+ .++...-.+..+-++|||..
T Consensus 41 ~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r 89 (189)
T 3nqo_A 41 SRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDV 89 (189)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 458888888863 4569999999885 45567778899999999976
No 382
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=50.95 E-value=16 Score=30.18 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=36.0
Q ss_pred ChHHHHHHhcCcCCCCCHHHHHhhcC--chhhhhHHHHHhhCCcEee
Q 018851 70 SPEVQLFLAVPAEGSISKDELQKKLD--PAVFKIGCSQAGKNKWVEM 114 (349)
Q Consensus 70 ~PE~rl~~~l~~~g~~~~~el~~~~~--~~~~~ig~g~~~k~~wi~i 114 (349)
.++.+++..|...+++++.+|.+.++ ++...-.+..+.++|||..
T Consensus 45 ~~~~~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r 91 (168)
T 2nyx_A 45 IPQFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLVGAELIDR 91 (168)
T ss_dssp HHHHHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 35788888887656799999998854 5566678899999999976
No 383
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=50.53 E-value=3.3 Score=42.73 Aligned_cols=57 Identities=12% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEe-eeeEEEEeCh
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQD-IKRETWVLTG 60 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~-~~~~~~~LTe 60 (349)
+..|++.|.+.+. .+..++++.+|++..++.+.+..|...|+|.-.- .....|.+|+
T Consensus 518 ~~~I~~~l~~~g~-it~~di~~l~~ls~~qa~~~L~~Lv~~G~l~~~G~gr~t~Y~~~~ 575 (583)
T 3lmm_A 518 TNAAMLWLSEVGD-LATSDLMAMCGVSRGTAKACVDGLVDEERVVAVGGGRSRRYRLVE 575 (583)
T ss_dssp -----------------------------------------------------------
T ss_pred HHHHHHHHHHcCC-cCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEeCCCCceEEEEee
Confidence 4568899988887 4667899999999999999999999999886543 3555788876
No 384
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=50.18 E-value=41 Score=25.15 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=36.4
Q ss_pred ChHHHHHHhcCcCCCCCHHHH----Hhhc--CchhhhhHHHHHhhCCcEeeC
Q 018851 70 SPEVQLFLAVPAEGSISKDEL----QKKL--DPAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 70 ~PE~rl~~~l~~~g~~~~~el----~~~~--~~~~~~ig~g~~~k~~wi~i~ 115 (349)
.++.+++..|...+++++.+| .+.+ .++...-.+..+-++|||...
T Consensus 8 ~~q~~iL~~l~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~ 59 (99)
T 1tbx_A 8 YPEAIVLAYLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKER 59 (99)
T ss_dssp CHHHHHHHHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEE
Confidence 468899999987677999999 6664 455666778999999999764
No 385
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=50.16 E-value=12 Score=36.84 Aligned_cols=58 Identities=14% Similarity=0.156 Sum_probs=41.9
Q ss_pred HHHHHhhCCCCCChHHHHHHhCCCHHHH----HHHHHHhccCCcEEEEeeeeEEEEeChhHHHHhh
Q 018851 6 ILGYLEKNEQISDSGNFAAERGFDHNDV----VNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAA 67 (349)
Q Consensus 6 iL~~L~~~~~~~~~~~la~~~g~~~~~v----~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~l~ 67 (349)
++..|..... .+...+++..|.+..+. ...+..|.+.|+|..+ ...+.||++|.-++.
T Consensus 373 ~~~~Lr~~~g-~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~gll~~~---~~~~~lT~~G~~~~~ 434 (457)
T 1olt_A 373 VIKSLICNFR-LDYSPIEQQWDLLFADYFAEDLKLLAPLAKDGLVDVD---EKGIQVTAKGRLLIR 434 (457)
T ss_dssp HHHHHHHHSE-EEHHHHHHHTTCCHHHHTHHHHHHHHHHHHTTSEEEC---SSEEEECTTTGGGHH
T ss_pred HHHHHHHcCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEE---CCEEEECHhhHHHHH
Confidence 4444543443 57788888899986543 3456789999999875 458999999988764
No 386
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=50.16 E-value=30 Score=32.13 Aligned_cols=70 Identities=20% Similarity=0.209 Sum_probs=50.0
Q ss_pred HHHHHHHhhC--CCCCChHHHHHHhCCCHHHHHHHHH-HhccCCcEEEEeeeeEEEEeChhHHHHhhcCChHHHHH
Q 018851 4 EAILGYLEKN--EQISDSGNFAAERGFDHNDVVNVIK-SLHGFRYIDAQDIKRETWVLTGEGKKYAAEGSPEVQLF 76 (349)
Q Consensus 4 ~~iL~~L~~~--~~~~~~~~la~~~g~~~~~v~~~~~-~L~~kgli~~~~~~~~~~~LTeEG~~~l~~G~PE~rl~ 76 (349)
+.+|.++.+. +.......+|..+|.+...+..... .|...|+|....+-. .+|+.|-+++..-.|..++|
T Consensus 262 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~l~~~g~i~~~~~gr---~~~~~~~~~~~~~~~~~~~~ 334 (334)
T 1in4_A 262 RKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAGFLARTPRGR---IVTEKAYKHLKYEVPENRLF 334 (334)
T ss_dssp HHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHTHHHHHHTTSEEEETTEE---EECHHHHHHTTCCCC-----
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHHHHHHHHHcCCeecccccH---HhhHHHHHHhCCCCCccccC
Confidence 4677777652 3335778999999999888777666 788899998887733 68999999996556665553
No 387
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=49.78 E-value=3.4 Score=37.53 Aligned_cols=60 Identities=8% Similarity=-0.028 Sum_probs=0.0
Q ss_pred HHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccC-CcEEEEeeeeEEEEeChhHHHHhhcC
Q 018851 6 ILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGF-RYIDAQDIKRETWVLTGEGKKYAAEG 69 (349)
Q Consensus 6 iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~k-gli~~~~~~~~~~~LTeEG~~~l~~G 69 (349)
++.++.+.+. .-.-|+.+++++.+|.+.++.||.. |.- .-.+....+.||++|+.++...
T Consensus 8 ~F~~vae~gS---~s~AA~~L~isq~avS~~I~~LE~~lG~~-Lf~R~~r~v~lT~~G~~l~~~a 68 (313)
T 2h98_A 8 YFVTVVEEQS---ISKAAEKLCIAQPPLSRQIQKLEEELGIQ-LFERGFRPAKVTEAGMFFYQHA 68 (313)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHHHHhCC---HHHHHHHhCCCccHHHHHHHHHHHHhCCe-eEEcCCCCeEECHhHHHHHHHH
Confidence 3344444443 3356888999999999999999996 433 3344566899999999987543
No 388
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=49.68 E-value=15 Score=29.48 Aligned_cols=46 Identities=9% Similarity=0.305 Sum_probs=36.4
Q ss_pred ChHHHHHHhcCcCCCCCHHHHHhhc--CchhhhhHHHHHhhCCcEeeC
Q 018851 70 SPEVQLFLAVPAEGSISKDELQKKL--DPAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 70 ~PE~rl~~~l~~~g~~~~~el~~~~--~~~~~~ig~g~~~k~~wi~i~ 115 (349)
.++.+++..|...+++++.+|.+.+ .++...-.+..+.++|||...
T Consensus 37 ~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~ 84 (155)
T 1s3j_A 37 PAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIART 84 (155)
T ss_dssp HHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeec
Confidence 3488888888765668999999875 455666788999999999764
No 389
>3lfk_A MSCTV, MARR like protein, TVG0766549; multiple antibiotic resistance regulator, transcriptional regulator, winged helix-turn-helix motif; HET: CIT; 1.60A {Thermoplasma volcanium}
Probab=48.48 E-value=39 Score=27.17 Aligned_cols=61 Identities=26% Similarity=0.328 Sum_probs=45.9
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCC-CHHHHHHHHHHhccCCcEEE-EeeeeEEEEeChhHHHHh
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGF-DHNDVVNVIKSLHGFRYIDA-QDIKRETWVLTGEGKKYA 66 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~-~~~~v~~~~~~L~~kgli~~-~~~~~~~~~LTeEG~~~l 66 (349)
|-.+|-.|...+.-...+.+-.+.|+ |+++| ++.|-.-|+..- .++--+.+.||.||+-+.
T Consensus 38 ev~ll~f~k~hggkiplyriknesg~kdpe~v---lknl~dygfa~~dkerlgekiilt~egefv~ 100 (129)
T 3lfk_A 38 EVSLLLFLKTHGGKIPLYRIKNETGLKDPESV---LKNLMDYGFALEDKERLGEKIVLTSEGEFVA 100 (129)
T ss_dssp HHHHHHHHHHTTTEEEHHHHHHHSCCSSHHHH---HHHHHHHTSEEEEEETTEEEEEECHHHHHHH
T ss_pred hhhhhhhhhccCCccceEEeccccCCCCHHHH---HHHHHhccccccchHHhCCeeEEcccchhHH
Confidence 56788888887764567788888898 66665 567778888754 455677999999998654
No 390
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=48.24 E-value=25 Score=28.20 Aligned_cols=46 Identities=13% Similarity=0.038 Sum_probs=37.1
Q ss_pred ChHHHHHHhcCcCCCCCHHHHHhhcC--chhhhhHHHHHhhCCcEeeC
Q 018851 70 SPEVQLFLAVPAEGSISKDELQKKLD--PAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 70 ~PE~rl~~~l~~~g~~~~~el~~~~~--~~~~~ig~g~~~k~~wi~i~ 115 (349)
.++.+++..|...+++++.+|.+.++ ++...-.+..+-++|||...
T Consensus 43 ~~~~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~ 90 (155)
T 3cdh_A 43 VPEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRV 90 (155)
T ss_dssp HHHHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 34888999998767799999998864 55666788999999999764
No 391
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=48.24 E-value=32 Score=30.95 Aligned_cols=55 Identities=9% Similarity=0.069 Sum_probs=41.5
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHh-----CCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhH
Q 018851 3 EEAILGYLEKNEQISDSGNFAAER-----GFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEG 62 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~-----g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG 62 (349)
+..||.+++. +. .+..+++..+ |++...+..++..|...|+|... ...|.+++..
T Consensus 284 ~~~~l~~la~-g~-~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~---~~~y~~~~p~ 343 (350)
T 2qen_A 284 YVDILRAIAL-GY-NRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEE---DNTYKIADPV 343 (350)
T ss_dssp HHHHHHHHHT-TC-CSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE---TTEEEESSHH
T ss_pred HHHHHHHHHh-CC-CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEec---CCEEEEecHH
Confidence 5678888876 43 4667787666 89999999999999999999754 2356666543
No 392
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=47.45 E-value=35 Score=25.20 Aligned_cols=44 Identities=7% Similarity=0.091 Sum_probs=34.5
Q ss_pred HHHHHHhcCcCCCCCHHHHHhhcC--chhhhhHHHHHhhCCcEeeC
Q 018851 72 EVQLFLAVPAEGSISKDELQKKLD--PAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 72 E~rl~~~l~~~g~~~~~el~~~~~--~~~~~ig~g~~~k~~wi~i~ 115 (349)
..+++..|..+++++..||.+.+| ++...-.+..+.+.|||...
T Consensus 26 ~~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~ 71 (99)
T 3cuo_A 26 RLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQ 71 (99)
T ss_dssp HHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 567888887666789999998865 44566678899999999764
No 393
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=46.79 E-value=5.7 Score=35.94 Aligned_cols=36 Identities=19% Similarity=0.128 Sum_probs=5.8
Q ss_pred ChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeee
Q 018851 18 DSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKR 53 (349)
Q Consensus 18 ~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~ 53 (349)
+..+||+.+|++...|..|+..|++.|+|......-
T Consensus 42 se~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G 77 (247)
T 2ra5_A 42 NEIELAARLGLSRPTVRQAIQSLVDKGLLVRRRGVG 77 (247)
T ss_dssp --------------------------CEEEEEC---
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcCce
Confidence 567899999999999999999999999998766554
No 394
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=46.66 E-value=15 Score=27.38 Aligned_cols=45 Identities=16% Similarity=0.268 Sum_probs=35.9
Q ss_pred hHHHHHHhcCcCCCCCHHHHHhhcC--chhhhhHHHHHhhCCcEeeC
Q 018851 71 PEVQLFLAVPAEGSISKDELQKKLD--PAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 71 PE~rl~~~l~~~g~~~~~el~~~~~--~~~~~ig~g~~~k~~wi~i~ 115 (349)
++.+++..|...++++..+|.+.+| ++...-.+..+.+.|||...
T Consensus 21 ~~~~il~~l~~~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~ 67 (109)
T 1sfx_A 21 SDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
Confidence 3778888887656799999998854 55667788999999999763
No 395
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=46.26 E-value=16 Score=29.11 Aligned_cols=44 Identities=14% Similarity=0.214 Sum_probs=36.4
Q ss_pred hHHHHHHhcCcCCCCCHHHHHhhc--CchhhhhHHHHHhhCCcEee
Q 018851 71 PEVQLFLAVPAEGSISKDELQKKL--DPAVFKIGCSQAGKNKWVEM 114 (349)
Q Consensus 71 PE~rl~~~l~~~g~~~~~el~~~~--~~~~~~ig~g~~~k~~wi~i 114 (349)
+++.++..|...+++++.+|.+.+ .++...-.+..+-++|||..
T Consensus 32 ~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r 77 (145)
T 3g3z_A 32 NLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEW 77 (145)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEee
Confidence 588889888765679999999875 45567778899999999986
No 396
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=45.68 E-value=35 Score=35.56 Aligned_cols=24 Identities=13% Similarity=0.279 Sum_probs=19.4
Q ss_pred HHHHHHHHHHh-hCCceecCCCCcee
Q 018851 220 KVRKQLKDIFL-QMGFEEMPTNNFVE 244 (349)
Q Consensus 220 ~~~~~ir~if~-~mGF~e~~~~~~Ve 244 (349)
+++..||++|. +.||.|+.| |.+.
T Consensus 153 ~i~~~iR~f~~~~~gF~EVeT-PiL~ 177 (617)
T 4ah6_A 153 QMVMKMREYLCNLHGFVDIET-PTLF 177 (617)
T ss_dssp HHHHHHHHHHHTTSCCEECCC-CSSB
T ss_pred HHHHHHHHHHHhcCCeEEEeC-Ceec
Confidence 57788999996 699999986 6653
No 397
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=45.52 E-value=3.1 Score=42.22 Aligned_cols=25 Identities=4% Similarity=0.022 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhhCCceecCCCCcee
Q 018851 219 LKVRKQLKDIFLQMGFEEMPTNNFVE 244 (349)
Q Consensus 219 ~~~~~~ir~if~~mGF~e~~~~~~Ve 244 (349)
+.+++.+++.+...||+||.+ |.+.
T Consensus 189 ~aL~~~~~d~~~~~Gy~eV~~-P~lv 213 (485)
T 3qne_A 189 QALINYGLSFLSSKGYVPLQA-PVMM 213 (485)
T ss_dssp HHHHHHHHHHHHTTTCEEEEC-CSEE
T ss_pred HHHHHHHHHHHHHcCCEEEeC-Cccc
Confidence 346677788888899999975 5553
No 398
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=45.31 E-value=4.5 Score=36.73 Aligned_cols=48 Identities=8% Similarity=-0.050 Sum_probs=0.0
Q ss_pred HHHHHhCCCHHHHHHHHHHhccC-CcEEEEeeeeEEE-EeChhHHHHhhcC
Q 018851 21 NFAAERGFDHNDVVNVIKSLHGF-RYIDAQDIKRETW-VLTGEGKKYAAEG 69 (349)
Q Consensus 21 ~la~~~g~~~~~v~~~~~~L~~k-gli~~~~~~~~~~-~LTeEG~~~l~~G 69 (349)
.-|+.+++++.+|.+.++.||.. |.-=.+ +....+ .||++|+.++...
T Consensus 21 ~AA~~L~isq~avS~~I~~LE~~lg~~Lf~-R~~r~~~~lT~~G~~l~~~a 70 (324)
T 1al3_A 21 STAEGLYTSQPGISKQVRMLEDELGIQIFA-RSGKHLTQVTPAGQEIIRIA 70 (324)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHhCCCchHHHHHHHHHHHHhCCEEEE-ECCCCcceeCHhHHHHHHHH
Confidence 56788999999999999999995 543333 445567 8999999987554
No 399
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=45.24 E-value=91 Score=25.32 Aligned_cols=44 Identities=9% Similarity=0.043 Sum_probs=33.9
Q ss_pred hHHHHHHhcCc-CCCCCHHHHHhhc--CchhhhhHHHHHhhCCcEee
Q 018851 71 PEVQLFLAVPA-EGSISKDELQKKL--DPAVFKIGCSQAGKNKWVEM 114 (349)
Q Consensus 71 PE~rl~~~l~~-~g~~~~~el~~~~--~~~~~~ig~g~~~k~~wi~i 114 (349)
+++.++..|.. ++++++.+|.+.+ +++...-.+..+-++|||..
T Consensus 32 ~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R 78 (151)
T 4aik_A 32 THWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITR 78 (151)
T ss_dssp HHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEe
Confidence 57788888853 3447889998875 56677778899999999975
No 400
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=44.57 E-value=17 Score=28.76 Aligned_cols=46 Identities=11% Similarity=0.110 Sum_probs=37.2
Q ss_pred ChHHHHHHhcCcCCCCCHHHHHhhcC--chhhhhHHHHHhhCCcEeeC
Q 018851 70 SPEVQLFLAVPAEGSISKDELQKKLD--PAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 70 ~PE~rl~~~l~~~g~~~~~el~~~~~--~~~~~ig~g~~~k~~wi~i~ 115 (349)
.++.+++..|...+++++.+|.+.++ ++...-.+..+.++|||...
T Consensus 33 ~~~~~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~ 80 (145)
T 2a61_A 33 PAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRT 80 (145)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeec
Confidence 35888898887666799999998854 55667788999999999874
No 401
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=44.19 E-value=22 Score=28.21 Aligned_cols=46 Identities=9% Similarity=0.079 Sum_probs=37.3
Q ss_pred ChHHHHHHhcCc-CCCCCHHHHHhhcC--chhhhhHHHHHhhCCcEeeC
Q 018851 70 SPEVQLFLAVPA-EGSISKDELQKKLD--PAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 70 ~PE~rl~~~l~~-~g~~~~~el~~~~~--~~~~~ig~g~~~k~~wi~i~ 115 (349)
.++.+++..|.. .+++++.+|.+.++ ++...-.+..+.++|||...
T Consensus 35 ~~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~ 83 (147)
T 2hr3_A 35 FSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGGLIVRH 83 (147)
T ss_dssp HHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeC
Confidence 458889988876 67799999998864 55666788999999999764
No 402
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=43.68 E-value=42 Score=30.12 Aligned_cols=48 Identities=13% Similarity=0.027 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEe
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQD 50 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~ 50 (349)
...+||..+...+. .+..++|..+|++..-...++..++..|++=++.
T Consensus 155 ~~~~il~~~~~~g~-vt~~~la~~l~ws~~~a~e~L~~~e~~G~l~~D~ 202 (218)
T 3cuq_B 155 MVASALETVSEKGS-LTSEEFAKLVGMSVLLAKERLLLAEKMGHLCRDD 202 (218)
T ss_dssp GHHHHHHHHHHTSC-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHCCC-cCHHHHHHHhCCCHHHHHHHHHHHHHcCCEEEEC
Confidence 35678888887776 6889999999999999999999999999998875
No 403
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=43.51 E-value=4.9 Score=34.40 Aligned_cols=34 Identities=15% Similarity=0.179 Sum_probs=0.0
Q ss_pred ChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee
Q 018851 18 DSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI 51 (349)
Q Consensus 18 ~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~ 51 (349)
+-+++|+.+|++.+.|.++++.|+..|+|+....
T Consensus 166 t~~~lA~~lg~sr~tvsR~l~~L~~~G~I~~~~~ 199 (213)
T 1o5l_A 166 TLEELSRLFGCARPALSRVFQELEREGYIEKHGR 199 (213)
T ss_dssp ----------------------------------
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHCCeEEEcCC
Confidence 4578999999999999999999999999987653
No 404
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=42.95 E-value=6.2 Score=31.15 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=37.8
Q ss_pred cCChHHHHHHhcCcCCCCCHHHHHhhcCc------hhhhhHHHHHhhCCcEeeCc
Q 018851 68 EGSPEVQLFLAVPAEGSISKDELQKKLDP------AVFKIGCSQAGKNKWVEMGK 116 (349)
Q Consensus 68 ~G~PE~rl~~~l~~~g~~~~~el~~~~~~------~~~~ig~g~~~k~~wi~i~~ 116 (349)
-+.+|..|+.+|-..|+++..||.+.++. ....--+..+-++|||....
T Consensus 33 LT~~e~~VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~ 87 (99)
T 2k4b_A 33 VSNAELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp CCCSCSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEe
Confidence 34578889999976667999999988753 35556788999999997643
No 405
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=41.51 E-value=17 Score=28.22 Aligned_cols=45 Identities=9% Similarity=0.067 Sum_probs=35.6
Q ss_pred ChHHHHHHhcCc--CCCCCHHHHHhhc--CchhhhhHHHHHhhCCcEee
Q 018851 70 SPEVQLFLAVPA--EGSISKDELQKKL--DPAVFKIGCSQAGKNKWVEM 114 (349)
Q Consensus 70 ~PE~rl~~~l~~--~g~~~~~el~~~~--~~~~~~ig~g~~~k~~wi~i 114 (349)
.+|..||..|.+ +.+++..+|.+.+ ......-.+..+-++|||+-
T Consensus 20 ~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr 68 (91)
T 2dk5_A 20 NQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKA 68 (91)
T ss_dssp SSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
Confidence 468889999975 3369999999885 45566678899999999983
No 406
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=41.25 E-value=32 Score=24.09 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhcc
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHG 42 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~ 42 (349)
.|..||..+ ..+ .+..++|+.+|++...|...+..+..
T Consensus 15 ~e~~il~~~-~~g--~s~~eIA~~l~is~~tV~~~~~~~~~ 52 (74)
T 1fse_A 15 REREVFELL-VQD--KTTKEIASELFISEKTVRNHISNAMQ 52 (74)
T ss_dssp HHHHHHHHH-TTT--CCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HcC--CCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 367788876 344 37889999999999988877766543
No 407
>3m8e_A Putative DNA-binding protein; winged helix-turn-helix, ARSR family; 2.00A {Bacillus thuringiensis} PDB: 3m9a_A 3m8f_A 4aso_A 4ass_A
Probab=41.19 E-value=1.3e+02 Score=23.81 Aligned_cols=64 Identities=16% Similarity=0.223 Sum_probs=49.1
Q ss_pred HHHHHHHhh-CCC--CCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee-eeEEEEeChhHHHHhh
Q 018851 4 EAILGYLEK-NEQ--ISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI-KRETWVLTGEGKKYAA 67 (349)
Q Consensus 4 ~~iL~~L~~-~~~--~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~-~~~~~~LTeEG~~~l~ 67 (349)
+.+|-++-+ +++ ..+.-.+|+.+.++.-.|...+.+.--.|+|+.... ..+.|.|++-|-++++
T Consensus 45 yqvlmafinengeaqmlnktavaemiqlskptvfatvnsfycagyidetrvgrskiytlsdlgveive 112 (124)
T 3m8e_A 45 YQVLMAFINENGEAQMLNKTAVAEMIQLSKPTVFATVNSFYCAGYIDETRVGRSKIYTLSDLGVEIVE 112 (124)
T ss_dssp HHHHHHTBCTTSCBCCBCHHHHHHTSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHH
T ss_pred HHHHHHHHccccHHHHHhHHHHHHHHHhcCCceEEEeeeeeeeeecchhhcchheeEehhhcchHHHH
Confidence 556666543 232 234456888899999999999999999999987766 5669999999988653
No 408
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=40.91 E-value=23 Score=35.87 Aligned_cols=49 Identities=6% Similarity=0.156 Sum_probs=36.1
Q ss_pred HHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeee
Q 018851 4 EAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKR 53 (349)
Q Consensus 4 ~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~ 53 (349)
.+|+..|...+. .+.+++|+..+++..++.+.+..|...|+|.+.+..+
T Consensus 363 ~RI~r~L~~~~~-l~d~~ia~~a~i~~k~vR~~Ly~L~~~g~v~~qevp~ 411 (534)
T 2xub_A 363 ARIFRLVLQKKH-IEQKQVEDFAMIPAKEAKDMLYKMLSENFMSLQEIPK 411 (534)
T ss_dssp HHHHHHHHHC----CHHHHHHHHCSCHHHHHHHHHHHHHTTCC-------
T ss_pred HHHHHHHHHcCC-CCHHHHHHHhCCCHHHHHHHHHHHHHCCCeEEEEccC
Confidence 468888888887 6788999999999999999999999999999987744
No 409
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=40.36 E-value=21 Score=27.97 Aligned_cols=46 Identities=9% Similarity=0.113 Sum_probs=36.5
Q ss_pred ChHHHHHHhcCcCCCCCHHHHHhhcC--chhhhhHHHHHhhCCcEeeC
Q 018851 70 SPEVQLFLAVPAEGSISKDELQKKLD--PAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 70 ~PE~rl~~~l~~~g~~~~~el~~~~~--~~~~~ig~g~~~k~~wi~i~ 115 (349)
.++.+++..|...+++++.+|.+.++ ++...-.+..+.++|||...
T Consensus 31 ~~~~~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~ 78 (142)
T 3bdd_A 31 LTRYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRK 78 (142)
T ss_dssp HHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 34788888887656799999998854 55666788999999999764
No 410
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=39.63 E-value=39 Score=22.85 Aligned_cols=37 Identities=8% Similarity=0.103 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhc
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLH 41 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~ 41 (349)
-|..||..+. .+ .+..++|+.+|++...|...+..+.
T Consensus 2 re~~vl~l~~-~g--~s~~eIA~~l~is~~tV~~~~~~~~ 38 (61)
T 2jpc_A 2 RERQVLKLID-EG--YTNHGISEKLHISIKTVETHRMNMM 38 (61)
T ss_dssp HHHHHHHHHH-TS--CCSHHHHHHTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cC--CCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4778888864 44 3678999999999998876665543
No 411
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=39.41 E-value=19 Score=28.38 Aligned_cols=45 Identities=9% Similarity=0.135 Sum_probs=36.4
Q ss_pred hHHHHHHhcCcCCCCCHHHHHhhc--CchhhhhHHHHHhhCCcEeeC
Q 018851 71 PEVQLFLAVPAEGSISKDELQKKL--DPAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 71 PE~rl~~~l~~~g~~~~~el~~~~--~~~~~~ig~g~~~k~~wi~i~ 115 (349)
++..++..|...+++++.+|.+.+ .++...-.+..+.++|||...
T Consensus 38 ~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~ 84 (142)
T 2bv6_A 38 PQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRE 84 (142)
T ss_dssp HHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 478888888766678999999875 456677789999999999763
No 412
>1uze_A Angiotensin converting enzyme; metalloprotease, inhibitor, enalaprilat, zinc dependant peptidase, anti-hypertensive drug; HET: EAL; 1.82A {Homo sapiens} SCOP: d.92.1.5 PDB: 1o8a_A* 1o86_A* 1uzf_A* 2oc2_A* 2ydm_A* 2iux_A* 2iul_A* 2xy9_A* 3bkk_A* 3bkl_A* 3l3n_A*
Probab=39.28 E-value=28 Score=35.67 Aligned_cols=45 Identities=27% Similarity=0.552 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhhCCceecCCCCceeeeehhhhccCCCCC------CCCC----CCCCeee
Q 018851 219 LKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQ------HPAR----DSHDTFF 269 (349)
Q Consensus 219 ~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDaLf~Pqd------HPAR----d~~DTFy 269 (349)
.++.+..+++|.+|||..|+ .+||..|.+--|-+ ||.- ...|.|.
T Consensus 277 ~~m~~~~~~~f~~lg~~~~~------~~~w~~d~~~rpgk~r~~~chp~~~~~~~~~d~rI 331 (589)
T 1uze_A 277 RRMFKEADDFFTSLGLLPVP------PEFWNKSMLEKPTDGREVVCHASAWDFYNGKDFRI 331 (589)
T ss_dssp HHHHHHHHHHHHHTTCCCCC------HHHHHHCBCSCCCSSCCCCCSCEEEECSSSSCEEE
T ss_pred HHHHHHHHHHHHHCCCCcCc------hhHHHhhcccCCCCCCCCccccchhccCCCCCceE
Confidence 67778889999999999874 56999776766533 7766 5567443
No 413
>3nxq_A Angiotensin-converting enzyme; dicarboxy zinc metallopeptidase, hydrolase, hydrolase-hydrol inhibitor complex; HET: RX4 NAG FUC BMA P6G PG4; 1.99A {Homo sapiens} PDB: 2xyd_A* 2c6n_A* 2c6f_A*
Probab=39.17 E-value=16 Score=38.23 Aligned_cols=221 Identities=14% Similarity=0.201 Sum_probs=108.2
Q ss_pred HHHHHHHHhhCCC-CCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHHHh-hcCChHHHHHHhcC
Q 018851 3 EEAILGYLEKNEQ-ISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYA-AEGSPEVQLFLAVP 80 (349)
Q Consensus 3 e~~iL~~L~~~~~-~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~l-~~G~PE~rl~~~l~ 80 (349)
.++.|+.|...+. ..+.+++. ....+++.+..+-+.+-|.......+.+.|-++=..++ ....++.|......
T Consensus 88 ~~R~l~~l~~~g~~~l~~~~~~-----e~n~l~s~m~~iy~~akvc~~~g~~~cl~L~pdL~~im~~SrD~~er~~aW~~ 162 (629)
T 3nxq_A 88 LRRIIGAVRTLGSANLPLAKRQ-----QYNALLSQMSRIYSTAKVCLPQKTATCWSLDPDLTNILASSRSYAMLLFAWEG 162 (629)
T ss_dssp HHHHHHHHTCCGGGGSCHHHHH-----HHHHHHHHHHHHHHHCEEEC---CCCEEETTTHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhhCccCCCHHHHH-----HHHHHHHHHHHHhhceEEecCCCCcccccchhHHHHHHhhCCCHHHHHHHHHH
Confidence 3566666765442 11222221 23456666677767666654223334688845555667 58888888774442
Q ss_pred c---CCCCCHHHHHhhcCchhhhhHHHHHhhCCcEeeCce-eeec---cccchHHHHHHHHHHHcCCCCCHHHHHHHhhc
Q 018851 81 A---EGSISKDELQKKLDPAVFKIGCSQAGKNKWVEMGKQ-VSRK---VQNVEDKVKDLLLQVQNGHALSKEEISSLKAR 153 (349)
Q Consensus 81 ~---~g~~~~~el~~~~~~~~~~ig~g~~~k~~wi~i~~~-i~~~---~~~~~d~~~~~L~~i~~g~~~~~~~~~~LkkR 153 (349)
- .| ..++.+-.. -.++.=..|+.+|+-. -| ..+. .+++...++.+...|.. + -..+..-.|+
T Consensus 163 wr~~~g-~~l~~~y~~----~V~LrneaAk~~Gf~d--~~e~wR~~Ye~~~~~~~~e~l~~~i~P---L-y~~Lha~vR~ 231 (629)
T 3nxq_A 163 WHNAAG-IPLKPLYED----FTALSNEAYKQDGFTD--TGAYWRSWYNSPTFEDDLEHLYQQLEP---L-YLNLHAFVRR 231 (629)
T ss_dssp HHHHHH-HHHHHHHHH----HHHHHHHHHHTTTCSS--HHHHHHHTTCCTTHHHHHHHHHHHHHH---H-HHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHH----HHHHHHHHHHHcCCCC--HHHHHHHhcCHHHHHHHHHHHHHHHhh---H-HHHHHHHHHH
Confidence 1 11 233333222 1233334567777632 12 2221 22333344444444431 0 0123333455
Q ss_pred CceeeeEEEEEEEecCCCCCcchhhhhcccccccccCCCcccccccccccccCCCCCCCCCCCh--------HHHHHHHH
Q 018851 154 KLIVPQTWKGYSVRKGPNYAPKRKKAATDLTRENLQKGDWKELEFKEYNFNAKGQPAEGGHLHP--------LLKVRKQL 225 (349)
Q Consensus 154 kLi~~~~~~~~~i~kg~~~~~~~~~~~~~lt~e~l~sg~Wk~~~fk~yn~~~~~~~~~~g~~HP--------l~~~~~~i 225 (349)
+|...- |++......-....|--.|- ..+|.+. |++..|-+.-..--..+ -.++.+..
T Consensus 232 ~L~~~Y---------g~~~i~~~g~iPaHLlgnmw-~q~W~~~----yd~~~Pf~~~~~~dvt~~m~~qg~t~~~mf~~a 297 (629)
T 3nxq_A 232 ALHRRY---------GDRYINLRGPIPAHLLGDMW-AQSWENI----YDMVVPFPDKPNLDVTSTMLQQGWQATHMFRVA 297 (629)
T ss_dssp HHHHHH---------CTTTCCTTSCEETTSSSSTT-SCCCGGG----HHHHCSCTTSCCCCCHHHHHHHTCCHHHHHHHH
T ss_pred HHHHhc---------cccccCCCCCcChhhccchh-hhchhhh----cccccCCCCCCcccchHHHHHcCCCHHHHHHHH
Confidence 554321 22111011111133333332 2455533 55555444322111111 25678889
Q ss_pred HHHHhhCCceecCCCCceeeeehhhhccCCCCCC
Q 018851 226 KDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQH 259 (349)
Q Consensus 226 r~if~~mGF~e~~~~~~Ves~fwNFDaLf~PqdH 259 (349)
.++|.+|||..|+ .+||++|.+--|-+.
T Consensus 298 e~ff~sLGl~~~~------~~Fw~~sl~~kp~d~ 325 (629)
T 3nxq_A 298 EEFFTSLELSPMP------PEFWEGSMLEKPADG 325 (629)
T ss_dssp HHHHHHTTCCCCC------HHHHHHCBCSCCSSS
T ss_pred HHHHHHcCCCcCC------hHHHHHHHHcCCCCC
Confidence 9999999999885 579999999999874
No 414
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=38.84 E-value=17 Score=28.55 Aligned_cols=45 Identities=7% Similarity=0.034 Sum_probs=36.2
Q ss_pred hHHHHHHhcCcCCCCCHHHHHhhcC--chhhhhHHHHHhhCCcEeeC
Q 018851 71 PEVQLFLAVPAEGSISKDELQKKLD--PAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 71 PE~rl~~~l~~~g~~~~~el~~~~~--~~~~~ig~g~~~k~~wi~i~ 115 (349)
++.+++..|...+++++.+|.+.++ ++...-.+..+-++|||...
T Consensus 37 ~~~~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~ 83 (142)
T 2fbi_A 37 QQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLERDGIVRRW 83 (142)
T ss_dssp HHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 4788888887656799999998864 55666788999999999764
No 415
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=38.72 E-value=23 Score=27.77 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=36.0
Q ss_pred hHHHHHHhcCcCCCCCHHHHHhhc--CchhhhhHHHHHhhCCcEeeC
Q 018851 71 PEVQLFLAVPAEGSISKDELQKKL--DPAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 71 PE~rl~~~l~~~g~~~~~el~~~~--~~~~~~ig~g~~~k~~wi~i~ 115 (349)
++..++..|...+++++.+|.+.+ .++...-.+..+.++|||...
T Consensus 35 ~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~ 81 (138)
T 1jgs_A 35 AQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERL 81 (138)
T ss_dssp HHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEec
Confidence 478888888765679999999875 455667788999999999773
No 416
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=37.65 E-value=21 Score=27.44 Aligned_cols=43 Identities=12% Similarity=0.102 Sum_probs=34.6
Q ss_pred HHHHHHhcCcC-CCCCHHHHHhh--cCchhhhhHHHHHhhCCcEee
Q 018851 72 EVQLFLAVPAE-GSISKDELQKK--LDPAVFKIGCSQAGKNKWVEM 114 (349)
Q Consensus 72 E~rl~~~l~~~-g~~~~~el~~~--~~~~~~~ig~g~~~k~~wi~i 114 (349)
|.+|+++|++. .++...+|.+. +++.+.+-+|..+++.|-|.-
T Consensus 21 eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI~S 66 (80)
T 2lnb_A 21 EQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSL 66 (80)
T ss_dssp HHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCccC
Confidence 88999999864 46677888877 566688889999999998754
No 417
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=37.47 E-value=30 Score=29.46 Aligned_cols=48 Identities=2% Similarity=0.079 Sum_probs=37.3
Q ss_pred CCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEe--eeeEEEEeChhH
Q 018851 15 QISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQD--IKRETWVLTGEG 62 (349)
Q Consensus 15 ~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~--~~~~~~~LTeEG 62 (349)
.+.++..|++.+++.-+-...+|..|+++|+|..-. .....|.-+..+
T Consensus 62 KlITpsvlseRlkI~gSLARkaLreL~~kGlIk~V~kh~~q~IYTra~~~ 111 (143)
T 2xzm_8 62 KVLTVSTVVEKLKVNGSLARQLMRTMADRKLVEKVAKNGNQWVYSVIGGV 111 (143)
T ss_dssp SEECHHHHHHHHCBCHHHHHHHHHHHHHTTSEEEEEEETTEEEEEETTCC
T ss_pred eeecHHHHHHHhcchHHHHHHHHHHHHHCCCEEEEecCCCeEEEecCCcc
Confidence 567889999999999999999999999999996532 234456554433
No 418
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=37.44 E-value=23 Score=28.67 Aligned_cols=47 Identities=9% Similarity=-0.021 Sum_probs=37.6
Q ss_pred ChHHHHHHhcCc-CCCCCHHHHHhhcC------chhhhhHHHHHhhCCcEeeCc
Q 018851 70 SPEVQLFLAVPA-EGSISKDELQKKLD------PAVFKIGCSQAGKNKWVEMGK 116 (349)
Q Consensus 70 ~PE~rl~~~l~~-~g~~~~~el~~~~~------~~~~~ig~g~~~k~~wi~i~~ 116 (349)
.+|..++.+|-. .+++++.||.+.++ ++...-.+..+-++|||....
T Consensus 9 ~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~ 62 (138)
T 2g9w_A 9 DLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIR 62 (138)
T ss_dssp HHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 468999999976 46799999998864 456667889999999997643
No 419
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=37.09 E-value=15 Score=37.38 Aligned_cols=116 Identities=15% Similarity=0.136 Sum_probs=54.5
Q ss_pred HHHHHHHHH-HHhhCCceecCCCCceeee-ehhhhccCCCCCCCCCCCCCeeeecCCCC-CCCCCHHHHHHHHHHhhcCC
Q 018851 219 LKVRKQLKD-IFLQMGFEEMPTNNFVESS-FWNFDALFQPQQHPARDSHDTFFLEEPST-TRELPEDYVERVKRVHESGG 295 (349)
Q Consensus 219 ~~~~~~ir~-if~~mGF~e~~~~~~Ves~-fwNFDaLf~PqdHPARd~~DTFyl~~p~~-~~~~p~~~~erVk~vHe~Gg 295 (349)
..+.+.+++ ++...||+++.+ |.+++. .| .+ -.|=..-..+.|.+..... .....++.+......++.
T Consensus 235 ~~L~~~~~~e~~~~~G~~EV~t-P~L~~~el~--~~----SGh~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~-- 305 (522)
T 2cja_A 235 RTFEKIVLEELLEPLGYREMIF-PKLVTWEVW--MK----SGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEV-- 305 (522)
T ss_dssp HHHHHHHHHHTHHHHTCEECBC-CSEEEHHHH--HH----HTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSC--
T ss_pred HHHHHHHHHHHHHHcCCEEEEC-CCcccHHHH--hh----cCCcCccccceeeeecCCccchhhhhhhhhhhhccccc--
Confidence 344555554 356679999985 665443 22 11 2343333445676642100 000112222222111110
Q ss_pred CCCCCcccccchhh-hhccccCC-CCchhHHHHHHHh-hcCCCCCceEEe-cCceecC
Q 018851 296 YGSRGYGYEWKREE-ANKNLLRT-HTTAVSSRMLKAL-AEKPFAPKKVFL-HRSCFQK 349 (349)
Q Consensus 296 ~gS~Gw~Y~W~~~~-a~~~vLRT-HTTavs~r~L~~l-~~~~~~p~k~fs-i~rVfR~ 349 (349)
.| -+|.... .....||+ ++.++. +++... -+....|.+++. ++.|||.
T Consensus 306 ---~~--~~~~~~~~~~~l~LrPt~e~~i~-~~f~~~i~s~~~LPlrl~q~ig~~FR~ 357 (522)
T 2cja_A 306 ---PT--KLIKEKIAEPIGGMCYAQCPPFW-MYVAGETLPNEEIPVKVFDRSGTSHRY 357 (522)
T ss_dssp ---CH--HHHHHHBCCCCEEECSSSSGGGG-GGTTTCEECGGGCSEEEEECSSEEECC
T ss_pred ---cc--cccccccCCCcEEEccCCcHHHH-HHHHhcccccccCCeeEEEEcCceEeC
Confidence 00 2344332 34689995 444433 332211 011235999999 9999995
No 420
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=37.06 E-value=36 Score=32.94 Aligned_cols=45 Identities=7% Similarity=0.050 Sum_probs=36.9
Q ss_pred HHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEE
Q 018851 4 EAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQ 49 (349)
Q Consensus 4 ~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~ 49 (349)
.++|..|...+. .+...+++.+|++...+.++++.|...|+++..
T Consensus 300 ~~ll~~l~~~p~-~t~~~~~~~~~~S~~TA~r~L~~L~e~GiL~~~ 344 (373)
T 3eqx_A 300 HELVQVIFEQPY-CRIQNLVESGLAKRQTASVYLKQLCDIGVLEEV 344 (373)
T ss_dssp HHHHHHHHHCSE-EEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC
T ss_pred HHHHHHHHHCCC-ccHHHHHHHhCcCHHHHHHHHHHHHHCCcEEEe
Confidence 356777766654 567888999999999999999999999999753
No 421
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=36.98 E-value=39 Score=25.68 Aligned_cols=38 Identities=16% Similarity=0.150 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhcc
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHG 42 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~ 42 (349)
-|..||..+. .| .+..++|..+|++...|...+..+..
T Consensus 33 rE~~Vl~l~~-~G--~s~~eIA~~L~iS~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 33 RECLILQEVE-KG--FTNQEIADALHLSKRSIEYSLTSIFN 70 (90)
T ss_dssp HHHHHHHHHH-TT--CCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cC--CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3778998887 44 47889999999999998877776644
No 422
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=36.79 E-value=14 Score=27.52 Aligned_cols=45 Identities=13% Similarity=0.115 Sum_probs=34.0
Q ss_pred HHHHHHhcCcCC---CCCHHHHHhhcCch--hhhhHHHHHhhCCcEeeCc
Q 018851 72 EVQLFLAVPAEG---SISKDELQKKLDPA--VFKIGCSQAGKNKWVEMGK 116 (349)
Q Consensus 72 E~rl~~~l~~~g---~~~~~el~~~~~~~--~~~ig~g~~~k~~wi~i~~ 116 (349)
|.+|+.+|...+ +++..||.+.+|-+ ..+=-+..+.+.|+|...+
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g 65 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEA 65 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecC
Confidence 678888887655 68999999987644 4455677888999986643
No 423
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=36.48 E-value=14 Score=25.77 Aligned_cols=47 Identities=23% Similarity=0.362 Sum_probs=30.2
Q ss_pred HHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhHHHHhh
Q 018851 7 LGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAA 67 (349)
Q Consensus 7 L~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG~~~l~ 67 (349)
..++...+ +..++|+.+|+++..|.+.+. .+.-+ .+++|+.|+.++.
T Consensus 7 ~~~~~~~g---s~~~~A~~lgis~~~vs~~~~---~~~~~--------~l~~t~~G~~~~~ 53 (67)
T 2pij_A 7 SKYLEEHG---TQSALAAALGVNQSAISQMVR---AGRSI--------EITLYEDGRVEAN 53 (67)
T ss_dssp HHHHHHTC---CHHHHHHHHTSCHHHHHHHHH---TTCCE--------EEEECTTSCEEEE
T ss_pred HHHHHHcC---CHHHHHHHHCcCHHHHHHHHc---CCCCC--------CeEEccCceEehH
Confidence 34444444 467899999999999988773 11111 2244888876553
No 424
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=36.35 E-value=70 Score=23.79 Aligned_cols=43 Identities=16% Similarity=0.178 Sum_probs=33.0
Q ss_pred HHHHHHhcCcCCCCCHHHHHhhcC--chhhhhHHHHHhhCCcEeeC
Q 018851 72 EVQLFLAVPAEGSISKDELQKKLD--PAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 72 E~rl~~~l~~~g~~~~~el~~~~~--~~~~~ig~g~~~k~~wi~i~ 115 (349)
-.+|+..|.. |+++..||.+.+| ++...--+..+.+.|+|...
T Consensus 25 r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~ 69 (98)
T 3jth_A 25 RLQILCMLHN-QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTR 69 (98)
T ss_dssp HHHHHHHTTT-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHhc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 3467788876 6789999998865 44556678999999999654
No 425
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MGA family; 2.31A {Enterococcus faecalis}
Probab=36.29 E-value=54 Score=32.64 Aligned_cols=90 Identities=10% Similarity=0.022 Sum_probs=56.2
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccC--CcEEEEeeeeEEEEeChhHH----HHhhcCChHHHHH
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGF--RYIDAQDIKRETWVLTGEGK----KYAAEGSPEVQLF 76 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~k--gli~~~~~~~~~~~LTeEG~----~~l~~G~PE~rl~ 76 (349)
+.+||+.|.+++. .+..++|+.+|++.-+|...++.|... +-+.+.. ...-|.|..+.. .....-+|+.|.+
T Consensus 20 ~~~IL~~L~~~~~-it~~eLA~~L~VS~RTIr~dI~~In~~L~~~~~I~~-~~~Gy~L~~~~~~~~~~~~~~~~~~eR~~ 97 (485)
T 3sqn_A 20 QIRLLEQLLNVPQ-LTAKRLAAQIQTTERTVFSDLQYIRSQLPADWSIET-DSSGIRLRNQGNAQTNELWSLFLPQSISI 97 (485)
T ss_dssp HHHHHHHHHHCCS-CBCGGGHHHHTSCHHHHHHHHHHHHTTCCTTEEEEE-ETTEEEEEEC---CTHHHHHHHGGGSHHH
T ss_pred HHHHHHHHHhCCC-cCHHHHHHHhCCCHHHHHHHHHHHHHhcccCcEEEE-cCCEEEEecCcHHHHHHHHHhcCHHHHHH
Confidence 5678999877665 678899999999999999999888763 2233332 333455543321 1222235665533
Q ss_pred ---HhcCcCCCCCHHHHHhhc
Q 018851 77 ---LAVPAEGSISKDELQKKL 94 (349)
Q Consensus 77 ---~~l~~~g~~~~~el~~~~ 94 (349)
..|-.++++++.+|...+
T Consensus 98 ~Il~~LL~~~~isi~~Lae~l 118 (485)
T 3sqn_A 98 QLLKELLFTKELVTTSFLSTS 118 (485)
T ss_dssp HHHHHHHHCSEEEHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHh
Confidence 222223468999988764
No 426
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=35.83 E-value=29 Score=25.38 Aligned_cols=42 Identities=10% Similarity=-0.036 Sum_probs=32.3
Q ss_pred HHHHHhcCcCCCCCHHHHHhhcC--chhhhhHHHHHhhCCcEee
Q 018851 73 VQLFLAVPAEGSISKDELQKKLD--PAVFKIGCSQAGKNKWVEM 114 (349)
Q Consensus 73 ~rl~~~l~~~g~~~~~el~~~~~--~~~~~ig~g~~~k~~wi~i 114 (349)
.+|+.+|...++++..||.+.+| .+...-.+..+.+.|+|..
T Consensus 3 ~~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 3 NEILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 46777887667799999998865 4455667889999999973
No 427
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=35.77 E-value=25 Score=28.13 Aligned_cols=45 Identities=16% Similarity=0.106 Sum_probs=36.2
Q ss_pred hHHHHHHhcCcCCCCCHHHHHhhcC--chhhhhHHHHHhhCCcEeeC
Q 018851 71 PEVQLFLAVPAEGSISKDELQKKLD--PAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 71 PE~rl~~~l~~~g~~~~~el~~~~~--~~~~~ig~g~~~k~~wi~i~ 115 (349)
++..++..|...+++++.+|.+.++ ++...-.+..+.++|||...
T Consensus 48 ~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~ 94 (153)
T 2pex_A 48 PQYLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRT 94 (153)
T ss_dssp HHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeec
Confidence 5788888887666799999998754 55666788999999999774
No 428
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=34.98 E-value=88 Score=31.49 Aligned_cols=112 Identities=12% Similarity=0.015 Sum_probs=78.6
Q ss_pred HHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee--eeEEEEeChhHHHHh------------hcC
Q 018851 4 EAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI--KRETWVLTGEGKKYA------------AEG 69 (349)
Q Consensus 4 ~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~--~~~~~~LTeEG~~~l------------~~G 69 (349)
.+|...|-..|. .+..+++..+++++..|..++-.|-..|+|..... ....|.+..++--++ +-|
T Consensus 22 ~~V~~~Ll~~G~-ltL~~I~~~t~L~~~~Vk~~L~vLIQh~lV~~~~~~~~~~~Y~~~~~~il~~lR~pk~l~~i~~~~G 100 (534)
T 2xub_A 22 EKIGVHLIRTGS-QPLRVIAHDTGTSLDQVKKALCVLVQHNLVSYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYS 100 (534)
T ss_dssp HHHHHHHHHHCS-EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTTEEEEEECHHHHHGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-cCHHHHHHHhCCCHHHHHHHHHHHHhcCCeeEEeCCCCcEEEEEChhhHHHHHhhHHHHHHHHHHhc
Confidence 356667776676 56788999999999999999999999999987644 347888888774322 124
Q ss_pred ChHHHHHHhcCcCCCCCHHHHHhhcC--------------chhhhhHHHHHhhCCcEeeCc
Q 018851 70 SPEVQLFLAVPAEGSISKDELQKKLD--------------PAVFKIGCSQAGKNKWVEMGK 116 (349)
Q Consensus 70 ~PE~rl~~~l~~~g~~~~~el~~~~~--------------~~~~~ig~g~~~k~~wi~i~~ 116 (349)
...+.|+..|-..|.++++++...+. .....-.+..+.+.|||..-.
T Consensus 101 ~~a~~I~~~ll~~G~~t~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fI~rv~ 161 (534)
T 2xub_A 101 DTGELIVEELLLNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCP 161 (534)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTSSSSCCCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHHhhcccccccccccCHHHHHHHHHHHHhCCCEEeCC
Confidence 44455665555567788888754431 113344778888999986543
No 429
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=34.26 E-value=35 Score=26.97 Aligned_cols=49 Identities=16% Similarity=0.198 Sum_probs=38.0
Q ss_pred hhcCCh--HHHHHHhcCcCCCCCHHHHHh-h--cCchhhhhHHHHHhhCCcEee
Q 018851 66 AAEGSP--EVQLFLAVPAEGSISKDELQK-K--LDPAVFKIGCSQAGKNKWVEM 114 (349)
Q Consensus 66 l~~G~P--E~rl~~~l~~~g~~~~~el~~-~--~~~~~~~ig~g~~~k~~wi~i 114 (349)
-+.|+. ++-++.+|...+..++.+|.. . ++.+..+-.++-+.++||+..
T Consensus 10 ~~~~L~~~QfsiL~~L~~~~~~t~~~Lae~~l~~drstvsrnl~~L~r~GlVe~ 63 (95)
T 1bja_A 10 SNDVLNEKTATILITIAKKDFITAAEVREVHPDLGNAVVNSNIGVLIKKGLVEK 63 (95)
T ss_dssp TTTSSCHHHHHHHHHHHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSEEE
T ss_pred HhcCCCHHHHHHHHHHHHCCCCCHHHHHHHHhcccHHHHHHHHHHHHHCCCeec
Confidence 445655 566777776666799999998 5 567777788999999999973
No 430
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=33.90 E-value=30 Score=27.32 Aligned_cols=45 Identities=4% Similarity=0.093 Sum_probs=34.9
Q ss_pred ChHHHHHHhcCcC--CCCCHHHHHhhcC--chhhhhHHHHHhhCCcEee
Q 018851 70 SPEVQLFLAVPAE--GSISKDELQKKLD--PAVFKIGCSQAGKNKWVEM 114 (349)
Q Consensus 70 ~PE~rl~~~l~~~--g~~~~~el~~~~~--~~~~~ig~g~~~k~~wi~i 114 (349)
.+++.++..|... +++++.+|.+.++ ++...-.+..+-++|||..
T Consensus 37 ~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r 85 (127)
T 2frh_A 37 FEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDK 85 (127)
T ss_dssp HHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 3478888888654 6689999998865 4455567899999999976
No 431
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=33.61 E-value=25 Score=35.40 Aligned_cols=39 Identities=15% Similarity=0.051 Sum_probs=29.5
Q ss_pred hhhccccCCCCchhH----HHHHHHhhcCCCCCceEEecCceecC
Q 018851 309 EANKNLLRTHTTAVS----SRMLKALAEKPFAPKKVFLHRSCFQK 349 (349)
Q Consensus 309 ~a~~~vLRTHTTavs----~r~L~~l~~~~~~p~k~fsi~rVfR~ 349 (349)
+.....||.=||+.. .+.+.... ...|.+++.++.|||.
T Consensus 179 e~~~~~LRPE~t~~i~~~~~~~~~sy~--r~LP~rl~qig~~FR~ 221 (505)
T 1ati_A 179 RGLLAYLRPETAQGIFVNFKNVLDATS--RKLGFGIAQIGKAFRN 221 (505)
T ss_dssp GGGEEEECSSSHHHHHHTHHHHHHHHT--CCSSEEEEEEEEEEBC
T ss_pred cccceeecccchhHHHHHHHHHHHhcC--CCCCEEEEEeeceeeC
Confidence 456789999888877 56665331 2469999999999994
No 432
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=33.45 E-value=37 Score=27.58 Aligned_cols=35 Identities=6% Similarity=-0.052 Sum_probs=31.1
Q ss_pred CCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEE
Q 018851 15 QISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQ 49 (349)
Q Consensus 15 ~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~ 49 (349)
.+.++..+++.+++.-+-...++..|+++|+|..-
T Consensus 58 KlITpsvlseRlkI~gSLAR~aLreL~~kGlIk~V 92 (108)
T 3u5c_Z 58 RYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKPI 92 (108)
T ss_dssp SSBSHHHHHHTTCCCTTHHHHHHHHHSSSSSCEEE
T ss_pred eEEeHHHhhhhhhhhHHHHHHHHHHHHHCCCEEEE
Confidence 35778899999999999999999999999999653
No 433
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=33.30 E-value=41 Score=30.14 Aligned_cols=41 Identities=15% Similarity=0.154 Sum_probs=34.2
Q ss_pred HHHHHHHhhCC-CCCChHHHHHHhCCCHHHHHHHHHHhccCC
Q 018851 4 EAILGYLEKNE-QISDSGNFAAERGFDHNDVVNVIKSLHGFR 44 (349)
Q Consensus 4 ~~iL~~L~~~~-~~~~~~~la~~~g~~~~~v~~~~~~L~~kg 44 (349)
++.|+.|.+.+ ...++.+||+.+|+++.+|.+.+..+-+.|
T Consensus 19 ~r~l~~l~~~g~~~isS~ela~~~gv~~~qiRkDls~fg~~G 60 (212)
T 3keo_A 19 YRIFKRFNTDGIEKASSKQIADALGIDSATVRRDFSYFGELG 60 (212)
T ss_dssp HHHHHHHHHTTCCEECHHHHHHHHTSCHHHHHHHHHTTGGGT
T ss_pred HHHHHHHHHCCCeEECHHHHHHHHCCCHHHHHHHHHHHhhcC
Confidence 46788887765 456889999999999999999999997665
No 434
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=33.13 E-value=89 Score=27.27 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=38.7
Q ss_pred ChhHHHHhhcCChHHHHHHhcCcCCCCCHHHHHhhc--CchhhhhHHHHHhhCCcEeeCc
Q 018851 59 TGEGKKYAAEGSPEVQLFLAVPAEGSISKDELQKKL--DPAVFKIGCSQAGKNKWVEMGK 116 (349)
Q Consensus 59 TeEG~~~l~~G~PE~rl~~~l~~~g~~~~~el~~~~--~~~~~~ig~g~~~k~~wi~i~~ 116 (349)
|+-.++||+ .||.....+++++..+|.+.+ .++...-.+..+.++|||....
T Consensus 1 t~~~edYL~------~I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~ 54 (214)
T 3hrs_A 1 TPNKEDYLK------CLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDK 54 (214)
T ss_dssp CCCHHHHHH------HHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CchHHHHHH------HHHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEec
Confidence 444566663 356555556679999999885 4667778999999999998765
No 435
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=32.71 E-value=7.8 Score=35.35 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=43.0
Q ss_pred CCCCCCCCCCChHHH-HHHHHHHHHhhCCceecC--CCCceeeeehhhhccCCCCCCCCCC
Q 018851 206 KGQPAEGGHLHPLLK-VRKQLKDIFLQMGFEEMP--TNNFVESSFWNFDALFQPQQHPARD 263 (349)
Q Consensus 206 ~~~~~~~g~~HPl~~-~~~~ir~if~~mGF~e~~--~~~~Ves~fwNFDaLf~PqdHPARd 263 (349)
|++-+.+...||..+ +.+++..-+.++|+...+ -...++..||.|=+++.|+..++|=
T Consensus 2 ~~~~p~p~~~~P~~~~~~~~~~~W~~~~~l~~~~~~r~r~~~~~~~~~~~~~~P~~~~~rl 62 (300)
T 1di1_A 2 PPPTQWSYLCHPRVKEVQDEVDGYFLENWKFPSFKAVRTFLDAKFSEVTCLYFPLALDDRI 62 (300)
T ss_dssp CCCCSCCCCCCTTHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHCHHHHHHHHCTTSCTTTH
T ss_pred CCCCCCCcccCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCcchhhhhcCCCCCHHHH
Confidence 556666778888765 566677777889875321 1235788899999999999999994
No 436
>2x96_A Angiotensin converting enzyme; hydrolase, ACE inhibitor, zinc metallopeptidase; HET: RX3 EPE NAG BMA MAN; 1.85A {Drosophila melanogaster} PDB: 2x8z_A* 2x90_A* 2x91_A* 2x8y_A* 2x97_A* 2xhm_A* 3zqz_A* 2x94_A* 2x92_A* 2x93_A* 2x95_A* 1j36_A* 1j37_A* 1j38_A
Probab=31.46 E-value=52 Score=33.90 Aligned_cols=32 Identities=28% Similarity=0.630 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhhCCceecCCCCceeeeehhhhccCCC
Q 018851 219 LKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQP 256 (349)
Q Consensus 219 ~~~~~~ir~if~~mGF~e~~~~~~Ves~fwNFDaLf~P 256 (349)
.++.+...++|.+|||..|+ .+||+-..+.-|
T Consensus 281 ~~m~~~~~~~~~slG~~~~~------~~f~~~sm~~rp 312 (598)
T 2x96_A 281 LKMFQMGDDFFTSMNLTKLP------QDFWDKSIIEKP 312 (598)
T ss_dssp HHHHHHHHHHHHHTTCCCCC------HHHHHHCBCSCC
T ss_pred HHHHHHHHHHHHHcCCCccc------hHHHHHHHHcCc
Confidence 37788899999999999885 469984444445
No 437
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=31.45 E-value=43 Score=28.81 Aligned_cols=58 Identities=14% Similarity=0.055 Sum_probs=44.9
Q ss_pred HHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeee-----eEEEEeChhHHHHh
Q 018851 5 AILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIK-----RETWVLTGEGKKYA 66 (349)
Q Consensus 5 ~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~-----~~~~~LTeEG~~~l 66 (349)
++|..++-+.. .+-.++++..|++ +.+.+..|.++|+|...-+. ...|.+|++-.+|+
T Consensus 98 EtLaiIay~qP-iTR~eI~~irGv~---~~~~v~~L~e~glI~e~g~~~~~GRp~ly~tT~~fL~~F 160 (162)
T 1t6s_A 98 EVLAVVAWHQP-VTKGEIQQIRGAS---PDYSIDRLLARGLIEVRGRADSPGRPLQYGTTEVFLDLF 160 (162)
T ss_dssp HHHHHHHHHCS-EEHHHHHHHHTCC---CCSHHHHHHHTTSEEEEEECSSTTCCEEEEECHHHHHHT
T ss_pred HHHHHHHHcCC-cCHHHHHHHHCCC---HHHHHHHHHHCCCEEEccccCCCCCCeEEEECHHHHHhc
Confidence 36666665665 5678999999998 66789999999999875432 45899999887765
No 438
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=31.05 E-value=63 Score=25.52 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhCCC---CCChHHHHHHhCCCHHHHHHHHHHhccCCcEE
Q 018851 2 AEEAILGYLEKNEQ---ISDSGNFAAERGFDHNDVVNVIKSLHGFRYID 47 (349)
Q Consensus 2 ~e~~iL~~L~~~~~---~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~ 47 (349)
.|++|...+.++.. -.+..+||+.+|++...|++.++.|==+|+-+
T Consensus 22 ~e~~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~kklG~~gf~e 70 (111)
T 2o3f_A 22 SERKLADYILAHPHXAIESTVNEISALANSSDAAVIRLCXSLGLKGFQD 70 (111)
T ss_dssp HHHHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHChHHHHhcCHHHHHHHHCCCHHHHHHHHHHcCCCCHHH
Confidence 36677777765421 14678999999999999999999987766644
No 439
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=30.83 E-value=49 Score=29.97 Aligned_cols=37 Identities=14% Similarity=0.139 Sum_probs=31.9
Q ss_pred HHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhc
Q 018851 4 EAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLH 41 (349)
Q Consensus 4 ~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~ 41 (349)
..||+.|. .|...+..+||..+|++.++|..++..|.
T Consensus 25 ~~llr~la-~Grpv~~~~LA~~~g~~~~~v~~~L~~l~ 61 (220)
T 3f2g_A 25 VPLLRELA-KGRPVSRTTLAGILDWPAERVAAVLEQAT 61 (220)
T ss_dssp HHHHHHHT-TTSCBCHHHHHHHHTCCHHHHHHHHHHCT
T ss_pred HHHHHHHh-cCCCCCHHHHHHHhCcCHHHHHHHHHhCC
Confidence 35788887 56568899999999999999999999986
No 440
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=30.70 E-value=83 Score=24.90 Aligned_cols=45 Identities=13% Similarity=0.227 Sum_probs=35.4
Q ss_pred ChHHHHHHhcCcCCC--CCHHHHHhhcC--chhhhhHHHHHhhCCcEee
Q 018851 70 SPEVQLFLAVPAEGS--ISKDELQKKLD--PAVFKIGCSQAGKNKWVEM 114 (349)
Q Consensus 70 ~PE~rl~~~l~~~g~--~~~~el~~~~~--~~~~~ig~g~~~k~~wi~i 114 (349)
.+|.+++.+|...++ +++.||.+.++ ++...=.+..+.+.|+|..
T Consensus 26 ~~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r 74 (123)
T 3r0a_A 26 KADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQR 74 (123)
T ss_dssp HHHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 458889998875544 89999998854 4555668899999999976
No 441
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=30.50 E-value=39 Score=26.47 Aligned_cols=45 Identities=4% Similarity=0.110 Sum_probs=34.9
Q ss_pred hHHHHHHhcC-cCCCCCHHHHHhhcC--chhhhhHHHHHhhCCcEeeC
Q 018851 71 PEVQLFLAVP-AEGSISKDELQKKLD--PAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 71 PE~rl~~~l~-~~g~~~~~el~~~~~--~~~~~ig~g~~~k~~wi~i~ 115 (349)
++.+++..|. ..+++++.+|.+.+| ++...-.+..+.+.|||...
T Consensus 27 ~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 27 SVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp HHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 4778887774 346799999998864 55666778999999999873
No 442
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=30.48 E-value=57 Score=23.98 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHh
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSL 40 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L 40 (349)
-|..||..+ ..+ .+..++|+.+|++...|...+..+
T Consensus 25 ~e~~vl~l~-~~g--~s~~eIA~~l~is~~tV~~~l~r~ 60 (82)
T 1je8_A 25 RERDILKLI-AQG--LPNKMIARRLDITESTVKVHVKHM 60 (82)
T ss_dssp HHHHHHHHH-TTT--CCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHH-HcC--CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 367788876 344 478899999999999887665543
No 443
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=30.17 E-value=33 Score=27.08 Aligned_cols=45 Identities=11% Similarity=0.051 Sum_probs=36.3
Q ss_pred ChHHHHHHhcCcCCCCCHHHHHhhc--CchhhhhHHHHHhhCCcEeeC
Q 018851 70 SPEVQLFLAVPAEGSISKDELQKKL--DPAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 70 ~PE~rl~~~l~~~g~~~~~el~~~~--~~~~~~ig~g~~~k~~wi~i~ 115 (349)
.++.+++..|...++ ++.+|.+.+ .++...-.+..+-++|||...
T Consensus 37 ~~~~~iL~~l~~~~~-~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~ 83 (144)
T 3f3x_A 37 YLDFSILKATSEEPR-SMVYLANRYFVTQSAITAAVDKLEAKGLVRRI 83 (144)
T ss_dssp HHHHHHHHHHHHSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHCCC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEEec
Confidence 458899999987666 999999875 456677788999999999764
No 444
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=30.14 E-value=75 Score=28.71 Aligned_cols=59 Identities=15% Similarity=0.102 Sum_probs=46.2
Q ss_pred HHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeee----eEEEEeChhHHHHhh
Q 018851 5 AILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIK----RETWVLTGEGKKYAA 67 (349)
Q Consensus 5 ~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~----~~~~~LTeEG~~~l~ 67 (349)
++|..++-+.. .+-.++++..|++. .+.+..|.++|+|....+. ...|.+|++-..++-
T Consensus 104 EtLaiIAy~QP-ITR~eI~~irGv~~---~~~v~~Lle~gLI~e~Gr~~~~Gp~ly~tT~~Fl~~fG 166 (219)
T 2z99_A 104 ETLAVVAYRQP-VTRARVSAVRGVNV---DAVMRTLLARGLITEVGTDADTGAVTFATTELFLERLG 166 (219)
T ss_dssp HHHHHHHHHCS-EEHHHHHHHHTSCC---HHHHHHHHHTTSEEEEEECTTTCCEEEEECHHHHHHHS
T ss_pred HHHHHHHHcCC-cCHHHHHHHHCCCH---HHHHHHHHHCCCEEEccccCCCCCeEEEECHHHHHHhC
Confidence 46777766665 56779999999987 4788999999999886543 368999999888774
No 445
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*
Probab=29.79 E-value=60 Score=28.77 Aligned_cols=40 Identities=15% Similarity=0.090 Sum_probs=33.2
Q ss_pred HHHHHHHhhCCC-CCChHHHHHHhCCCHHHHHHHHHHhccC
Q 018851 4 EAILGYLEKNEQ-ISDSGNFAAERGFDHNDVVNVIKSLHGF 43 (349)
Q Consensus 4 ~~iL~~L~~~~~-~~~~~~la~~~g~~~~~v~~~~~~L~~k 43 (349)
+++|+.|.+.+. ..++.+||+.+|+++.+|.+.+..+-.-
T Consensus 15 ~r~l~~l~~~g~~~iss~~l~~~~~~~~~~iRkdls~~g~~ 55 (211)
T 2dt5_A 15 LRILEELEAQGVHRTSSEQLGGLAQVTAFQVRKDLSYFGSY 55 (211)
T ss_dssp HHHHHHHHHTTCCEECHHHHHHHHTSCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCcEECHHHHHHHhCCCHHHeechHHHHHHh
Confidence 467888887653 4688999999999999999999999554
No 446
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=29.78 E-value=46 Score=27.67 Aligned_cols=45 Identities=11% Similarity=0.032 Sum_probs=35.6
Q ss_pred hHHHHHHhcCcCCC---CCHHHHHhhc--CchhhhhHHHHHhhCCcEeeC
Q 018851 71 PEVQLFLAVPAEGS---ISKDELQKKL--DPAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 71 PE~rl~~~l~~~g~---~~~~el~~~~--~~~~~~ig~g~~~k~~wi~i~ 115 (349)
++.+++..|...++ +++.+|.+.+ .++...-.+..+-++|||...
T Consensus 70 ~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 119 (181)
T 2fbk_A 70 AGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERR 119 (181)
T ss_dssp HHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECC
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEec
Confidence 48888888865332 8999999885 456677788999999999774
No 447
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=29.47 E-value=44 Score=32.26 Aligned_cols=45 Identities=16% Similarity=0.148 Sum_probs=37.1
Q ss_pred ChHHHHHHhcCcC--CCCCHHHHHhhc--CchhhhhHHHHHhhCCcEee
Q 018851 70 SPEVQLFLAVPAE--GSISKDELQKKL--DPAVFKIGCSQAGKNKWVEM 114 (349)
Q Consensus 70 ~PE~rl~~~l~~~--g~~~~~el~~~~--~~~~~~ig~g~~~k~~wi~i 114 (349)
.++++++..|.+. +++++.+|.+.+ +++...-.+..+-++|||..
T Consensus 404 ~~q~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~~g~v~r 452 (487)
T 1hsj_A 404 YEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSK 452 (487)
T ss_dssp HHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCC
T ss_pred HHHHHHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEee
Confidence 4689999999766 679999999885 45566778899999999965
No 448
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*
Probab=29.03 E-value=64 Score=28.69 Aligned_cols=41 Identities=10% Similarity=0.078 Sum_probs=34.1
Q ss_pred HHHHHHHhhCCC-CCChHHHHHHhCCCHHHHHHHHHHhccCC
Q 018851 4 EAILGYLEKNEQ-ISDSGNFAAERGFDHNDVVNVIKSLHGFR 44 (349)
Q Consensus 4 ~~iL~~L~~~~~-~~~~~~la~~~g~~~~~v~~~~~~L~~kg 44 (349)
+++|+.|.+.+. ..++.+||+.+|+++.+|.+.+..+-.-|
T Consensus 20 ~r~l~~l~~~g~~~iss~~l~~~~~~~~~~iRkdls~fg~~G 61 (215)
T 2vt3_A 20 YRFLKNLHASGKQRVSSAELSDAVKVDSATIRRDFSYFGALG 61 (215)
T ss_dssp HHHHHHHHHTTCCEECHHHHHHHHCCCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHcCCcEECHHHHHHHhCCCHHHeechHHHHHHhc
Confidence 467888887653 46889999999999999999999996654
No 449
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=29.02 E-value=66 Score=31.48 Aligned_cols=65 Identities=22% Similarity=0.195 Sum_probs=49.1
Q ss_pred HHHHHHHHhh---CCCCCChHHHHHHhCCCHH--HHHHHHHHhccCCcEEEE-eeeeEEEEeChhHHHHhh
Q 018851 3 EEAILGYLEK---NEQISDSGNFAAERGFDHN--DVVNVIKSLHGFRYIDAQ-DIKRETWVLTGEGKKYAA 67 (349)
Q Consensus 3 e~~iL~~L~~---~~~~~~~~~la~~~g~~~~--~v~~~~~~L~~kgli~~~-~~~~~~~~LTeEG~~~l~ 67 (349)
+.+||.++.. +-+....+.+++..++++. .+...+..|...+||.-. ...-.-|.||-.|-.||.
T Consensus 16 d~rvL~ave~g~~~he~vp~~~i~~~~~l~~~~~~~~~~l~~l~~~~lv~~~~~~~y~gy~lt~~gyD~LA 86 (397)
T 4gyi_A 16 DWRVLTAVEMGSKNHEIVPTPLIEKIARLRGGSSGVHKSIATLAKAGLIARMKEAKYDGYRLTYGGLDYLA 86 (397)
T ss_dssp HHHHHHHHHHHTTTCSSEEHHHHHHHHCSSSCCCSHHHHHHHHHHTTSEEEEECSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHhccCCcccccHHHHHHHhCCCCchHhHHHHHHhhhhcCceeeccCCCcceeeeccCchHHHH
Confidence 5678888864 2344555667777888654 689999999999999754 445568999999999873
No 450
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=28.66 E-value=63 Score=24.46 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHh
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSL 40 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L 40 (349)
-|..||..+ ..+ .+..++|+.+|++...|...+..+
T Consensus 31 ~e~~vl~l~-~~g--~s~~eIA~~l~is~~tV~~~l~r~ 66 (95)
T 3c57_A 31 QERTLLGLL-SEG--LTNKQIADRMFLAEKTVKNYVSRL 66 (95)
T ss_dssp HHHHHHHHH-HTT--CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHH-HcC--CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 367788876 444 478899999999998866554443
No 451
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=28.25 E-value=87 Score=23.49 Aligned_cols=54 Identities=13% Similarity=0.291 Sum_probs=41.7
Q ss_pred HHHHHHHHhh-CCCCCChHHHHHHhCC-CHHHHHHHHHHhccCCcEEEEeeeeEEE
Q 018851 3 EEAILGYLEK-NEQISDSGNFAAERGF-DHNDVVNVIKSLHGFRYIDAQDIKRETW 56 (349)
Q Consensus 3 e~~iL~~L~~-~~~~~~~~~la~~~g~-~~~~v~~~~~~L~~kgli~~~~~~~~~~ 56 (349)
-+++++.+.. .+...+.+++|..+++ ..--+.-++.=|++-|+|+-.......|
T Consensus 16 t~kFi~l~~~~~~~~i~l~~aa~~L~v~~kRRiYDI~NVLe~igli~K~~k~~~~W 71 (76)
T 1cf7_A 16 TTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSKNSIQW 71 (76)
T ss_dssp HHHHHHHHHHSSTTEEEHHHHHHHTTTCCTHHHHHHHHHHHHHTSEEEEETTEEEE
T ss_pred HHHHHHHHHhCCCCcCcHHHHHHHhCCccceehhhHHHHHhHhcceeecCCCcEEE
Confidence 3566777765 3345788999999999 8888999999999999998765544444
No 452
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=26.99 E-value=45 Score=27.23 Aligned_cols=45 Identities=4% Similarity=-0.005 Sum_probs=35.6
Q ss_pred hHHHHHHhcCc--CCCCCHHHHHhhc--CchhhhhHHHHHhhCCcEeeC
Q 018851 71 PEVQLFLAVPA--EGSISKDELQKKL--DPAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 71 PE~rl~~~l~~--~g~~~~~el~~~~--~~~~~~ig~g~~~k~~wi~i~ 115 (349)
++..++..|.. ++++++.+|.+.+ .++...-.+..+-++|||...
T Consensus 47 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 95 (168)
T 3u2r_A 47 QQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDRGLVLRT 95 (168)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeec
Confidence 58888888875 3479999999885 456677788999999999764
No 453
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=26.88 E-value=56 Score=26.41 Aligned_cols=43 Identities=14% Similarity=0.237 Sum_probs=33.9
Q ss_pred HHHHHHhcCcCCCCCHHHHHhhcC--chhhhhHHHHHhhCCcEee
Q 018851 72 EVQLFLAVPAEGSISKDELQKKLD--PAVFKIGCSQAGKNKWVEM 114 (349)
Q Consensus 72 E~rl~~~l~~~g~~~~~el~~~~~--~~~~~ig~g~~~k~~wi~i 114 (349)
+.+++..|..+++++..||.+.+| ++...--+..+.+.|+|..
T Consensus 7 d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 51 (144)
T 2cfx_A 7 DLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQ 51 (144)
T ss_dssp HHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 567888888777899999999865 3445556789999999974
No 454
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=26.61 E-value=2e+02 Score=21.41 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=33.6
Q ss_pred CCh-HHHHHHhcCcCCCCCHHHHHhhcC--chhhhhHHHHHhhCCcEeeC
Q 018851 69 GSP-EVQLFLAVPAEGSISKDELQKKLD--PAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 69 G~P-E~rl~~~l~~~g~~~~~el~~~~~--~~~~~ig~g~~~k~~wi~i~ 115 (349)
|.| -.+|+..|.. |+++..||.+.+| ++...--+..+.+.|+|...
T Consensus 21 ~~~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~ 69 (102)
T 3pqk_A 21 SHPVRLMLVCTLVE-GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETR 69 (102)
T ss_dssp CSHHHHHHHHHHHT-CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 344 4456677754 6799999998864 55666778999999999653
No 455
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=26.53 E-value=1.1e+02 Score=23.04 Aligned_cols=46 Identities=11% Similarity=0.068 Sum_probs=34.3
Q ss_pred CCh-HHHHHHhcCcCCCCCHHHHHhhcC--chhhhhHHHHHhhCCcEeeC
Q 018851 69 GSP-EVQLFLAVPAEGSISKDELQKKLD--PAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 69 G~P-E~rl~~~l~~~g~~~~~el~~~~~--~~~~~ig~g~~~k~~wi~i~ 115 (349)
+.| ..+|+..| ..++++..+|.+.+| ++...--+..+.+.|+|...
T Consensus 19 ~~~~r~~IL~~L-~~~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~ 67 (114)
T 2oqg_A 19 SDETRWEILTEL-GRADQSASSLATRLPVSRQAIAKHLNALQACGLVESV 67 (114)
T ss_dssp TCHHHHHHHHHH-HHSCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CChHHHHHHHHH-HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEE
Confidence 344 45678888 456799999998865 44556677899999999764
No 456
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=26.53 E-value=87 Score=28.03 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=34.6
Q ss_pred HHHHHHHHhhCCCCCChHHHHH----HhC--CCHHHHHHHHHHhccCCcEEEE
Q 018851 3 EEAILGYLEKNEQISDSGNFAA----ERG--FDHNDVVNVIKSLHGFRYIDAQ 49 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~----~~g--~~~~~v~~~~~~L~~kgli~~~ 49 (349)
++.+|.+++. +. +..+++. ..| ++...+..++..|...|+|...
T Consensus 292 ~~~~l~~la~-g~--~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~ 341 (357)
T 2fna_A 292 YLNIMRTLSK-CG--KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKE 341 (357)
T ss_dssp HHHHHHHHTT-CB--CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEES
T ss_pred HHHHHHHHHc-CC--CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEec
Confidence 5678888876 43 6667763 467 8999999999999999999754
No 457
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=26.28 E-value=72 Score=24.78 Aligned_cols=33 Identities=18% Similarity=0.176 Sum_probs=27.7
Q ss_pred HHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHH
Q 018851 4 EAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIK 38 (349)
Q Consensus 4 ~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~ 38 (349)
..|+..|...+ .+..++|..+|++...|.+++.
T Consensus 10 ~~I~~~l~~~~--~ti~dlA~~~gVS~~TVsR~L~ 42 (93)
T 2l0k_A 10 IKIGKYIVETK--KTVRVIAKEFGVSKSTVHKDLT 42 (93)
T ss_dssp HHHHHHHHHHC--CCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHcC--CCHHHHHHHHCCCHHHHHHHHc
Confidence 56888887766 4788999999999999999873
No 458
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=26.27 E-value=50 Score=31.02 Aligned_cols=55 Identities=9% Similarity=0.170 Sum_probs=39.6
Q ss_pred HHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChhH
Q 018851 4 EAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGEG 62 (349)
Q Consensus 4 ~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeEG 62 (349)
..|+..|.+.+...+.+++++.+|+.+++|+.++..| |++..-... ..+.+|++-
T Consensus 196 ~~i~~~L~~~~~~isi~~is~~Tgi~~~Dii~tL~~l---~~l~~~kg~-~~i~~~~~~ 250 (276)
T 3to7_A 196 DTLITLLVEHQKEITIDEISSMTSMTTTDILHTAKTL---NILRYYKGQ-HIIFLNEDI 250 (276)
T ss_dssp HHHHHHHHHTCSEEEHHHHHHHHCBCHHHHHHHHHHT---TCEEEETTE-EEEECCHHH
T ss_pred HHHHHHHHhcCCceeHHHHHHHhCCCHHHHHHHHHHC---CCEEEeCCc-EEEEECHHH
Confidence 4577888776654678999999999999998876655 677664433 346677643
No 459
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=25.91 E-value=93 Score=23.79 Aligned_cols=68 Identities=18% Similarity=0.272 Sum_probs=51.7
Q ss_pred HHHHHHHHHhhC--CC-CCChHHHHHHh-CCCHHHHHHHHHHhccCCcEEEEee-eeEEEEeChhHHHHhhcC
Q 018851 2 AEEAILGYLEKN--EQ-ISDSGNFAAER-GFDHNDVVNVIKSLHGFRYIDAQDI-KRETWVLTGEGKKYAAEG 69 (349)
Q Consensus 2 ~e~~iL~~L~~~--~~-~~~~~~la~~~-g~~~~~v~~~~~~L~~kgli~~~~~-~~~~~~LTeEG~~~l~~G 69 (349)
+.++||..|... .. -.-..+++..+ +..+.+|-.++..|-..|-+..=.. +++.|.|...|++--.+|
T Consensus 4 ~K~~Ile~l~~k~~~KskfYf~D~~k~~P~~k~r~vKK~~~~LV~Eg~leywSSGSTTmyglkg~gk~~~~e~ 76 (78)
T 1ucr_A 4 AKQKVVDFLNSKSGSKSKFYFNDFTDLFPDMKQREVKKILTALVNDEVLEYWSSGSTTMYGLKGAGKQAAAEH 76 (78)
T ss_dssp HHHHHHHHHSSHHHHSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEETTHHHHHHC--
T ss_pred HHHHHHHHHHhcccccccchHHHHHHHccccCHHHHHHHHHHHHhcCceEEEecCCeEEEecCCCCCCccccc
Confidence 356789888754 11 12235788887 9999999999999999999988555 688999999999866554
No 460
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=25.55 E-value=74 Score=24.14 Aligned_cols=78 Identities=14% Similarity=0.072 Sum_probs=46.3
Q ss_pred HHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeee-EEEEeChhHHHHhhcCChHHHHHHhcCcCC
Q 018851 5 AILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKR-ETWVLTGEGKKYAAEGSPEVQLFLAVPAEG 83 (349)
Q Consensus 5 ~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~-~~~~LTeEG~~~l~~G~PE~rl~~~l~~~g 83 (349)
.|+..+. .+ .+..++|..+|++...|.+.++.....|.+....... ..-.||++= +..|...+.+..
T Consensus 25 ~i~~~~~-~g--~s~~~ia~~lgis~~Tv~~w~~~~~~~g~~~~~~~~g~~~~~l~~~~---------~~~i~~~~~~~~ 92 (128)
T 1pdn_C 25 KIVEMAA-DG--IRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEI---------ENRIEEYKRSSP 92 (128)
T ss_dssp HHHHHHH-TT--CCHHHHHHHHTCCHHHHHHHHHHHHHHCCSSCCCCSCCCCCSSCSTH---------HHHHHHTTTTCT
T ss_pred HHHHHHH-cC--CCHHHHHHHHCcCHHHHHHHHHHHHhhCCcccccCCCCCCCcCCHHH---------HHHHHHHHHhCc
Confidence 4555553 44 4678999999999999999999887766432211110 111233321 234555665444
Q ss_pred CCCHHHHHhhc
Q 018851 84 SISKDELQKKL 94 (349)
Q Consensus 84 ~~~~~el~~~~ 94 (349)
..+..+|...+
T Consensus 93 ~~s~~~i~~~l 103 (128)
T 1pdn_C 93 GMFSWEIREKL 103 (128)
T ss_dssp TCCHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 46777776654
No 461
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=25.50 E-value=1.2e+02 Score=27.77 Aligned_cols=83 Identities=10% Similarity=0.031 Sum_probs=54.7
Q ss_pred CCCHHHHHHHHHHhccC--CcEEEEeeeeEEEEeCh--hHHHHhhcCChHHHHHHhcCcCCCCCHHHHHhhcC--chhhh
Q 018851 27 GFDHNDVVNVIKSLHGF--RYIDAQDIKRETWVLTG--EGKKYAAEGSPEVQLFLAVPAEGSISKDELQKKLD--PAVFK 100 (349)
Q Consensus 27 g~~~~~v~~~~~~L~~k--gli~~~~~~~~~~~LTe--EG~~~l~~G~PE~rl~~~l~~~g~~~~~el~~~~~--~~~~~ 100 (349)
-+++++|.+|++.|+.- |+--+.-.....+...+ .... --++++++...|.++.++|+..++ ...++
T Consensus 114 ~IS~dDi~rAik~L~~LG~g~~v~~~~g~~~VqSvp~el~~D-------~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~ 186 (234)
T 3cuq_A 114 DVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMD-------HTVVLQLAEKNGYVTVSEIKASLKWETERAR 186 (234)
T ss_dssp SCCHHHHHHHHHHHGGGBTTCEEEEETTEEEEECSCCCCCHH-------HHHHHHHHTTTSEECHHHHHHHHTCCHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCCeEEEEECCEEEEEeCCCccchH-------HHHHHHHHHhcCcCcHHHHHHHhCCCHHHHH
Confidence 47999999999999996 44333322233333332 2222 223556666567789999998764 55778
Q ss_pred hHHHHHhhCCcEeeCc
Q 018851 101 IGCSQAGKNKWVEMGK 116 (349)
Q Consensus 101 ig~g~~~k~~wi~i~~ 116 (349)
-+|-.+.+.|.+=+|.
T Consensus 187 ~~L~~l~~~GllwvD~ 202 (234)
T 3cuq_A 187 QVLEHLLKEGLAWLDL 202 (234)
T ss_dssp HHHHHHHHHTSCEEES
T ss_pred HHHHHHHhCCCEEEeC
Confidence 8999999999666653
No 462
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=25.44 E-value=71 Score=23.35 Aligned_cols=31 Identities=13% Similarity=0.281 Sum_probs=24.2
Q ss_pred HHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHH
Q 018851 4 EAILGYLEKNEQISDSGNFAAERGFDHNDVVNV 36 (349)
Q Consensus 4 ~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~ 36 (349)
.+|..+|...+ .+..+||+.+|++.+.|.++
T Consensus 12 ~ri~~~l~~~g--lT~~~LA~~~Gvs~stls~~ 42 (74)
T 1neq_A 12 ADVIAGLKKRK--LSLSALSRQFGYAPTTLANA 42 (74)
T ss_dssp HHHHHHHHTTS--CCHHHHHHHHSSCHHHHHHT
T ss_pred HHHHHHHHHcC--CCHHHHHHHHCcCHHHHHHH
Confidence 35667777555 47889999999999998744
No 463
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=25.29 E-value=26 Score=27.73 Aligned_cols=45 Identities=7% Similarity=0.107 Sum_probs=35.6
Q ss_pred hHHHHHHhcCcCCCCCHHHHHhhcC--chhhhhHHHHHhhCCcEeeC
Q 018851 71 PEVQLFLAVPAEGSISKDELQKKLD--PAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 71 PE~rl~~~l~~~g~~~~~el~~~~~--~~~~~ig~g~~~k~~wi~i~ 115 (349)
++..++..|...+++++.+|.+.++ ++...-.+..+.++|||...
T Consensus 41 ~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~ 87 (147)
T 1z91_A 41 PQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRK 87 (147)
T ss_dssp HHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEec
Confidence 4778888887656689999998864 55666788999999999764
No 464
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=25.28 E-value=49 Score=30.89 Aligned_cols=62 Identities=11% Similarity=0.075 Sum_probs=41.0
Q ss_pred EEEEeChhHHHHhhcCChHHHHHHhcCcC-CC------CCHHHHHhhc--CchhhhhHHHHHhhCCcEeeCce
Q 018851 54 ETWVLTGEGKKYAAEGSPEVQLFLAVPAE-GS------ISKDELQKKL--DPAVFKIGCSQAGKNKWVEMGKQ 117 (349)
Q Consensus 54 ~~~~LTeEG~~~l~~G~PE~rl~~~l~~~-g~------~~~~el~~~~--~~~~~~ig~g~~~k~~wi~i~~~ 117 (349)
..++|-+-+.+ .-..--..|+..|.+. |. .+.+++++.| .+..++=|+|.|+|.|.|.++++
T Consensus 210 I~LSlk~~~~~--~~~~~a~~il~~L~~~~G~l~~~DkS~pe~I~~~f~~SK~~FKrAiG~L~K~~~I~~~~~ 280 (285)
T 3go5_A 210 LNLSLKPRSFE--MLENDAQMILTYLESNGGFMTLNDKSSPDDIKATFGISKGQFKKALGGLMKAGKIKQDQF 280 (285)
T ss_dssp EEEECSCCCCC--CCCHHHHHHHHHHHHTTTEESCCTTSCHHHHHHHHSSCHHHHHHHHHHHHHTTCEEEETT
T ss_pred EEEEeChhhhh--ccchHHHHHHHHHHhcCCeeccCCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCcEEEcCC
Confidence 34455444432 2333356778888643 22 3457777775 57789999999999999999764
No 465
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=25.13 E-value=98 Score=26.28 Aligned_cols=47 Identities=15% Similarity=0.232 Sum_probs=34.8
Q ss_pred HHHHHHHHhh----CCCCCChHHHHHHhCCC-HHHHHHHHHHhccCCcEEEE
Q 018851 3 EEAILGYLEK----NEQISDSGNFAAERGFD-HNDVVNVIKSLHGFRYIDAQ 49 (349)
Q Consensus 3 e~~iL~~L~~----~~~~~~~~~la~~~g~~-~~~v~~~~~~L~~kgli~~~ 49 (349)
+..++..|.. .+-..+..++|+.+|++ .+.|.+.+..|+.+|++...
T Consensus 8 q~~i~~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~~l~~~~~l~~~ 59 (202)
T 1jhf_A 8 QQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVIEIV 59 (202)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHHHHHHCCCceeC
Confidence 3445555542 33212678999999999 89999999999999988765
No 466
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=24.94 E-value=1.1e+02 Score=22.42 Aligned_cols=39 Identities=10% Similarity=0.159 Sum_probs=30.6
Q ss_pred HHHHHHHhhCCCC-CChHHHHHHhCCCHHHHHHHHHHhcc
Q 018851 4 EAILGYLEKNEQI-SDSGNFAAERGFDHNDVVNVIKSLHG 42 (349)
Q Consensus 4 ~~iL~~L~~~~~~-~~~~~la~~~g~~~~~v~~~~~~L~~ 42 (349)
..|+..|..+|-+ .+.+++|..+|++.+.|-.++..|+.
T Consensus 35 ~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve~vL~~lQ~ 74 (76)
T 2k9l_A 35 LELLNYLNEKGFLSKSVEEISDVLRCSVEELEKVRQKVLR 74 (76)
T ss_dssp HHHHHHCTTSSTTCCCHHHHHHHHTSCHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 3466777777753 45688999999999999999988875
No 467
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=24.57 E-value=65 Score=26.09 Aligned_cols=43 Identities=14% Similarity=0.144 Sum_probs=33.5
Q ss_pred HHHHHHhcCcCCCCCHHHHHhhcC--chhhhhHHHHHhhCCcEee
Q 018851 72 EVQLFLAVPAEGSISKDELQKKLD--PAVFKIGCSQAGKNKWVEM 114 (349)
Q Consensus 72 E~rl~~~l~~~g~~~~~el~~~~~--~~~~~ig~g~~~k~~wi~i 114 (349)
+.+++..|..+++++..+|.+.+| ++...--+..+.+.|+|..
T Consensus 9 ~~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 53 (150)
T 2w25_A 9 DRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQG 53 (150)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 568888888777899999999865 3344556788899999853
No 468
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=24.55 E-value=96 Score=24.84 Aligned_cols=78 Identities=12% Similarity=0.035 Sum_probs=45.9
Q ss_pred HHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeE-EEEeChhHHHHhhcCChHHHHHHhcCcCC
Q 018851 5 AILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRE-TWVLTGEGKKYAAEGSPEVQLFLAVPAEG 83 (349)
Q Consensus 5 ~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~-~~~LTeEG~~~l~~G~PE~rl~~~l~~~g 83 (349)
.|+..+. .+ .+..++|..+|++...|.+.++.....|.+........ .-.+|++=+ ..|...+.++.
T Consensus 40 ~iv~~~~-~G--~s~~~iA~~lgis~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~---------~~I~~~~~~~~ 107 (149)
T 1k78_A 40 RIVELAH-QG--VRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVV---------EKIAEYKRQNP 107 (149)
T ss_dssp HHHHHHH-TT--CCHHHHHHHHTCCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHH---------HHHHHHHHHCT
T ss_pred HHHHHHH-cC--CCHHHHHHHHCcCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHH---------HHHHHHHHhCc
Confidence 4555553 44 46789999999999999999998887775422111110 123444322 34445554433
Q ss_pred CCCHHHHHhhc
Q 018851 84 SISKDELQKKL 94 (349)
Q Consensus 84 ~~~~~el~~~~ 94 (349)
..+..+|...+
T Consensus 108 ~~s~~~i~~~l 118 (149)
T 1k78_A 108 TMFAWEIRDRL 118 (149)
T ss_dssp TCCHHHHHHHH
T ss_pred chhHHHHHHHH
Confidence 46777766543
No 469
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=24.40 E-value=66 Score=25.95 Aligned_cols=43 Identities=12% Similarity=0.224 Sum_probs=33.8
Q ss_pred HHHHHHhcCcCCCCCHHHHHhhcC--chhhhhHHHHHhhCCcEee
Q 018851 72 EVQLFLAVPAEGSISKDELQKKLD--PAVFKIGCSQAGKNKWVEM 114 (349)
Q Consensus 72 E~rl~~~l~~~g~~~~~el~~~~~--~~~~~ig~g~~~k~~wi~i 114 (349)
..+++..|..+++++..+|.+.+| ++...--+..+.+.|+|..
T Consensus 5 ~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 49 (150)
T 2pn6_A 5 DLRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKG 49 (150)
T ss_dssp HHHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 567889998777899999998865 3445556788999999864
No 470
>1ihs_I Hirutonin; hydrolase(serine proteinase), hydrolase-hydrolase inhibitor; HET: DPN OPR; 2.00A {Homo sapiens}
Probab=24.05 E-value=59 Score=19.50 Aligned_cols=11 Identities=36% Similarity=0.967 Sum_probs=8.0
Q ss_pred CCCCHHHHHHH
Q 018851 277 RELPEDYVERV 287 (349)
Q Consensus 277 ~~~p~~~~erV 287 (349)
..+|++|++..
T Consensus 13 e~IPEeYl~~~ 23 (26)
T 1ihs_I 13 EEIPEEYLQXX 23 (26)
T ss_pred CcCCHHHHhhh
Confidence 36899998754
No 471
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A* 3tob_A*
Probab=23.81 E-value=54 Score=30.83 Aligned_cols=54 Identities=13% Similarity=0.189 Sum_probs=31.5
Q ss_pred HHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeChh
Q 018851 4 EAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLTGE 61 (349)
Q Consensus 4 ~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LTeE 61 (349)
..||..|.+.....+..++++.+|+..++|+.++..| |++.... ....+.+|++
T Consensus 196 ~~il~~L~~~~~~isi~~is~~T~i~~~Dii~tL~~l---~~l~~~k-g~~~i~~~~~ 249 (278)
T 2pq8_A 196 WVLLENLRDFRGTLSIKDLSQMTSITQNDIISTLQSL---NMVKYWK-GQHVICVTPK 249 (278)
T ss_dssp HHHHHHTC-------CHHHHHHHCBCHHHHHHHHHHT---TCEEC-----CEECCCHH
T ss_pred HHHHHHHHHcCCCccHHHHHHHhCCCHHHHHHHHHHC---CCEEEeC-CcEEEEECHH
Confidence 3577777665444678999999999999998886665 5665432 2234555543
No 472
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=23.55 E-value=1e+02 Score=31.71 Aligned_cols=85 Identities=8% Similarity=0.014 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHhccCC--cEEEEeeeeEEEEeChhHHHHhhcCChHHHHHHhcCcCCCCCHHHHHhhcC-------c--
Q 018851 28 FDHNDVVNVIKSLHGFR--YIDAQDIKRETWVLTGEGKKYAAEGSPEVQLFLAVPAEGSISKDELQKKLD-------P-- 96 (349)
Q Consensus 28 ~~~~~v~~~~~~L~~kg--li~~~~~~~~~~~LTeEG~~~l~~G~PE~rl~~~l~~~g~~~~~el~~~~~-------~-- 96 (349)
++++++.+|++.|+..| +..+.......++++....+. =-.+|++++...|.++..+|.+.++ =
T Consensus 455 ISp~Dll~A~~~le~Lg~~~~~L~~~~sgvlVvs~~~~~~-----~~~~il~l~~~~g~vT~~~la~~lg~~~~~~~Ws~ 529 (566)
T 1w7p_D 455 ISPMEMREACERFEHLGLNELKLVKVNKRILCVTSEKFDV-----VKEKLVDLIGDNPGSDLLRLTQILSSNNSKSNWTL 529 (566)
T ss_dssp CCHHHHHHHHTTGGGGTCTTCEEEECSSSCEEEESSCHHH-----HHHHHHHHHTTSTTCCHHHHHHHHSCSSSCCCBCH
T ss_pred cCHHHHHHHHHHHHHcCCCeEEEEEECCEEEEEcCCCchH-----HHHHHHHHHHhcCCcCHHHHHHHhCCccccCcccH
Confidence 69999999999999964 432333222233334333211 1245667776667799999998887 2
Q ss_pred hhhhhHHHHHhhCCcEeeCce
Q 018851 97 AVFKIGCSQAGKNKWVEMGKQ 117 (349)
Q Consensus 97 ~~~~ig~g~~~k~~wi~i~~~ 117 (349)
..+.-.|-.|.+.|.+=+|++
T Consensus 530 ~~A~e~L~~~e~eG~l~rDd~ 550 (566)
T 1w7p_D 530 GILMEVLQNCVDEGDLLIDKQ 550 (566)
T ss_dssp HHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHHcCCEEEECC
Confidence 255566788889998877754
No 473
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=23.48 E-value=1.5e+02 Score=20.17 Aligned_cols=35 Identities=11% Similarity=-0.007 Sum_probs=24.1
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHH
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKS 39 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~ 39 (349)
+..||...--.+ .+..++|+.+|++...|...+..
T Consensus 20 ~r~il~l~~~~g--~s~~eIA~~lgis~~tv~~~~~r 54 (70)
T 2o8x_A 20 QREALLLTQLLG--LSYADAAAVCGCPVGTIRSRVAR 54 (70)
T ss_dssp HHHHHHHHHTSC--CCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHCcCHHHHHHHHHH
Confidence 455665543344 47889999999999887655443
No 474
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=23.45 E-value=59 Score=24.47 Aligned_cols=48 Identities=10% Similarity=0.111 Sum_probs=35.1
Q ss_pred ChHHHHHHhcCcCCCCCHHHHHhhcCch---hhhhHHHHHhhCCcEeeCce
Q 018851 70 SPEVQLFLAVPAEGSISKDELQKKLDPA---VFKIGCSQAGKNKWVEMGKQ 117 (349)
Q Consensus 70 ~PE~rl~~~l~~~g~~~~~el~~~~~~~---~~~ig~g~~~k~~wi~i~~~ 117 (349)
.||++|+.+|...|+...=.+.+.+|-. +.+.-+=.+.+.+.+..|+.
T Consensus 10 ~~ee~I~~fL~~~Gp~~AL~IAK~LGlktAK~VNp~LY~m~~~~lL~~Dek 60 (72)
T 3eyi_A 10 QREEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLYRMKSRHLLDMDEQ 60 (72)
T ss_dssp HHHHHHHHHHHHHCSEEHHHHHHHTTCCSGGGTHHHHHHHHHTTSEEECTT
T ss_pred hhHHHHHHHHHHcCCchHHHHHHHhCcchhhhcCHHHHHHHHccCcCCCCC
Confidence 4699999999988877777777777644 34456666778888877653
No 475
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=23.25 E-value=19 Score=26.31 Aligned_cols=37 Identities=24% Similarity=0.331 Sum_probs=27.6
Q ss_pred hHHHHHHhCCCHHHHHHHHHHhccCCcEEEEeeeeEEEEeC--hhHHHHhhc
Q 018851 19 SGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDIKRETWVLT--GEGKKYAAE 68 (349)
Q Consensus 19 ~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~~~~~~~LT--eEG~~~l~~ 68 (349)
-...|+.+|+.+..|...+. ....+.|| ++|+.++.+
T Consensus 16 ~t~aA~~L~vtQ~AVS~~ir-------------~~r~v~Lt~~~~G~~~~~~ 54 (66)
T 2ovg_A 16 QTKTAKDLGVYPSSINQAIH-------------AGRKIFLTINADGSVYAEE 54 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHH-------------HTCEEEEEECTTSCEEEEE
T ss_pred HHHHHHHhCCCHHHHHHHHH-------------hCCCceeEecCCcceeHHh
Confidence 45789999999999999874 23356677 888766544
No 476
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=23.21 E-value=58 Score=26.39 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=33.9
Q ss_pred HHHHHHhcCcCCCCCHHHHHhhcCch--hhhhHHHHHhhCCcEee
Q 018851 72 EVQLFLAVPAEGSISKDELQKKLDPA--VFKIGCSQAGKNKWVEM 114 (349)
Q Consensus 72 E~rl~~~l~~~g~~~~~el~~~~~~~--~~~ig~g~~~k~~wi~i 114 (349)
+.+++..|..+++++..+|.+.+|-+ ...--+..+.+.|+|..
T Consensus 11 d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 11 DMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLGIIRK 55 (151)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 56888999877889999999987644 44456788999999963
No 477
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=23.14 E-value=1.1e+02 Score=25.87 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccC
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGF 43 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~k 43 (349)
-|.+||..|... .+..++|+.++++...|-..+..|..|
T Consensus 163 rE~~vL~~l~~g---~s~~~Ia~~l~~s~~Tv~~~i~~l~~K 201 (225)
T 3klo_A 163 REQQIIKLLGSG---ASNIEIADKLFVSENTVKTHLHNVFKK 201 (225)
T ss_dssp HHHHHHHHHTTT---CCHHHHHHHTTCCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcC---CCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 478899988753 467899999999999999999988876
No 478
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=22.92 E-value=79 Score=24.37 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHH
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIK 38 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~ 38 (349)
+|-.||..|...+ ...+|+..|+|.+.|.+.-.
T Consensus 14 ies~iL~~La~~g----Q~~vAe~~GvdeStISR~k~ 46 (83)
T 1zs4_A 14 IESALLNKIAMLG----TEKTAEAVGVDKSQISRWKR 46 (83)
T ss_dssp HHHHHHHHHHHHC----HHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----hHHHHHHhCCCHHHHhhhhh
Confidence 5788999998765 45799999999999988533
No 479
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=22.81 E-value=1e+02 Score=21.75 Aligned_cols=36 Identities=11% Similarity=0.043 Sum_probs=25.9
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhc
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLH 41 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~ 41 (349)
|..||..+ -.+ .+..++|+.+|++...|...+....
T Consensus 21 e~~vl~l~-~~g--~s~~eIA~~l~is~~tV~~~~~r~~ 56 (79)
T 1x3u_A 21 ERQVLSAV-VAG--LPNKSIAYDLDISPRTVEVHRANVM 56 (79)
T ss_dssp HHHHHHHH-TTT--CCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHH-HcC--CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 66777765 344 4778999999999988776554443
No 480
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=22.42 E-value=1.3e+02 Score=23.35 Aligned_cols=46 Identities=17% Similarity=0.296 Sum_probs=33.7
Q ss_pred CCh-HHHHHHhcCcCCCCCHHHHHhhcC--chhhhhHHHHHhhCCcEeeC
Q 018851 69 GSP-EVQLFLAVPAEGSISKDELQKKLD--PAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 69 G~P-E~rl~~~l~~~g~~~~~el~~~~~--~~~~~ig~g~~~k~~wi~i~ 115 (349)
|.| =.+|+..|. +|+++..||.+.+| ++..+--+..+.+.|+|...
T Consensus 16 ~~~~R~~Il~~L~-~~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~ 64 (118)
T 3f6o_A 16 ADPTRRAVLGRLS-RGPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTH 64 (118)
T ss_dssp TSHHHHHHHHHHH-TCCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHH-hCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEE
Confidence 344 356667776 46799999998865 44556668899999999764
No 481
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=22.20 E-value=92 Score=24.06 Aligned_cols=38 Identities=13% Similarity=0.009 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhcc
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHG 42 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~ 42 (349)
-|..||..+. .+ .+..++|+.+|++...|...+..+..
T Consensus 38 re~~Vl~l~~-~G--~s~~EIA~~L~iS~~TV~~~l~ri~~ 75 (99)
T 1p4w_A 38 KESEVLRLFA-EG--FLVTEIAKKLNRSIKTISSQKKSAMM 75 (99)
T ss_dssp HHHHHHHHHH-HT--CCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cC--CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3677887765 33 36789999999999987766655433
No 482
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=22.19 E-value=81 Score=26.82 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccC
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGF 43 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~k 43 (349)
-|.+||..|... .+..++|+.++++...|-..+..|..|
T Consensus 153 rE~~vL~~l~~g---~s~~eIa~~l~is~~TV~~hi~~l~~K 191 (225)
T 3c3w_A 153 QERTLLGLLSEG---LTNKQIADRMFLAEKTVKNYVSRLLAK 191 (225)
T ss_dssp HHHHHHHHHHTT---CCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 378889888754 467899999999999887777776654
No 483
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=22.09 E-value=69 Score=25.26 Aligned_cols=46 Identities=11% Similarity=0.116 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhCC---CCCChHHHHHHhCCCHHHHHHHHHHhccCCcEE
Q 018851 2 AEEAILGYLEKNE---QISDSGNFAAERGFDHNDVVNVIKSLHGFRYID 47 (349)
Q Consensus 2 ~e~~iL~~L~~~~---~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~ 47 (349)
.|++|...+-++. .-.+..+||+.+|++...|++-++.|==+|+-+
T Consensus 18 ~e~~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~kkLGf~gf~e 66 (107)
T 3iwf_A 18 NEKKIAQFILNYPHKVVNMTSQEIANQLETSSTSIIRLSKKVTPGGFNE 66 (107)
T ss_dssp HHHHHHHHHHHCHHHHTTCCHHHHHHHHTSCHHHHHHHHHHHSTTHHHH
T ss_pred HHHHHHHHHHhCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHhCCCCHHH
Confidence 3666776665542 124678999999999999999999997766643
No 484
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=21.75 E-value=1.3e+02 Score=22.77 Aligned_cols=46 Identities=9% Similarity=0.095 Sum_probs=34.0
Q ss_pred CCh-HHHHHHhcCcCCCCCHHHHHhhcC--chhhhhHHHHHhhCCcEeeC
Q 018851 69 GSP-EVQLFLAVPAEGSISKDELQKKLD--PAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 69 G~P-E~rl~~~l~~~g~~~~~el~~~~~--~~~~~ig~g~~~k~~wi~i~ 115 (349)
+.| -.+|+..|. .+++++.||.+.+| ++...--+..+.+.|+|...
T Consensus 24 ~~~~r~~IL~~L~-~~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~ 72 (106)
T 1r1u_A 24 GDYNRIRIMELLS-VSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAK 72 (106)
T ss_dssp CSHHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 344 456777776 45689999998865 44566678899999999764
No 485
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=21.73 E-value=66 Score=29.38 Aligned_cols=48 Identities=10% Similarity=0.012 Sum_probs=40.9
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI 51 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~ 51 (349)
+..||.++...+. .+.++++..+|++..-...++..|...|++=++..
T Consensus 169 ~~~vLe~a~~~g~-vt~~~L~~~lgW~~~Ra~~~L~~l~~~G~lwvD~q 216 (233)
T 1u5t_A 169 QTKILEICSILGY-SSISLLKANLGWEAVRSKSALDEMVANGLLWIDYQ 216 (233)
T ss_dssp HHHHHHTTTTTSC-CBHHHHHHHHCCCSHHHHHHHHHHHHTTSSEEECS
T ss_pred HHHHHHHHHhcCc-CcHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 5678887766665 67889999999999999999999999999988754
No 486
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=21.70 E-value=36 Score=29.53 Aligned_cols=46 Identities=9% Similarity=-0.063 Sum_probs=36.0
Q ss_pred ChHHHHHHhcCcCCCCCHHHHHhhcC--chhhhhHHHHHhhCCcEeeC
Q 018851 70 SPEVQLFLAVPAEGSISKDELQKKLD--PAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 70 ~PE~rl~~~l~~~g~~~~~el~~~~~--~~~~~ig~g~~~k~~wi~i~ 115 (349)
.+++.++..|...+++++.+|.+.++ ++...-.+..+-++|||...
T Consensus 48 ~~q~~iL~~L~~~~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~ 95 (207)
T 2fxa_A 48 INEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFS 95 (207)
T ss_dssp HHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 34788888887656799999998864 55666678999999999763
No 487
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=21.62 E-value=79 Score=26.20 Aligned_cols=42 Identities=7% Similarity=0.149 Sum_probs=32.7
Q ss_pred HHHHHHhcCcCCCCCHHHHHhhcCch--hhhhHHHHHhhCCcEe
Q 018851 72 EVQLFLAVPAEGSISKDELQKKLDPA--VFKIGCSQAGKNKWVE 113 (349)
Q Consensus 72 E~rl~~~l~~~g~~~~~el~~~~~~~--~~~ig~g~~~k~~wi~ 113 (349)
..+|+..|..+++++..+|.+.+|-+ ...--+..+.+.|+|+
T Consensus 5 d~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 5 DRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCee
Confidence 56899999988889999999987644 3334567888888875
No 488
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=21.47 E-value=99 Score=22.89 Aligned_cols=37 Identities=14% Similarity=0.129 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhc
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLH 41 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~ 41 (349)
-|..||..+ ..+ .+..++|+.+|++...|...+..+.
T Consensus 33 ~e~~vl~l~-~~g--~s~~eIA~~l~is~~tV~~~l~r~~ 69 (91)
T 2rnj_A 33 REMEILLLI-AKG--YSNQEIASASHITIKTVKTHVSNIL 69 (91)
T ss_dssp HHHHHHHHH-HTT--CCTTHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HcC--CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 467788776 344 3677999999999988766554443
No 489
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=20.40 E-value=71 Score=29.18 Aligned_cols=48 Identities=15% Similarity=0.066 Sum_probs=41.1
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHhCCCHHHHHHHHHHhccCCcEEEEee
Q 018851 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRYIDAQDI 51 (349)
Q Consensus 3 e~~iL~~L~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kgli~~~~~ 51 (349)
+..||.++...+. .+.++|+..+|++..-...++..|...|++=++..
T Consensus 156 ~~~vLela~~~g~-vt~~~L~~~l~W~~~Ra~~~L~~l~~~GllwvD~q 203 (234)
T 3cuq_A 156 HTVVLQLAEKNGY-VTVSEIKASLKWETERARQVLEHLLKEGLAWLDLQ 203 (234)
T ss_dssp HHHHHHHHTTTSE-ECHHHHHHHHTCCHHHHHHHHHHHHHHTSCEEESS
T ss_pred HHHHHHHHHhcCc-CcHHHHHHHhCCCHHHHHHHHHHHHhCCCEEEeCC
Confidence 4568887775665 67889999999999999999999999999988854
No 490
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=20.39 E-value=1.5e+02 Score=19.45 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=20.7
Q ss_pred HhhCCCCCChHHHHHHhCCCHHHHHHHHH
Q 018851 10 LEKNEQISDSGNFAAERGFDHNDVVNVIK 38 (349)
Q Consensus 10 L~~~~~~~~~~~la~~~g~~~~~v~~~~~ 38 (349)
|...+ .+..++|+.+|++...|.+.+.
T Consensus 27 l~~~g--~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 27 LAKMG--YTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHTT--CCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHcC--CCHHHHHHHHCcCHHHHHHHHH
Confidence 33444 3678999999999999987653
No 491
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=20.38 E-value=87 Score=25.70 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=33.6
Q ss_pred HHHHHHhcCcCCCCCHHHHHhhcCch--hhhhHHHHHhhCCcEee
Q 018851 72 EVQLFLAVPAEGSISKDELQKKLDPA--VFKIGCSQAGKNKWVEM 114 (349)
Q Consensus 72 E~rl~~~l~~~g~~~~~el~~~~~~~--~~~ig~g~~~k~~wi~i 114 (349)
+.+++..|..+++++..||.+.+|-+ ...--+..+.+.|+|..
T Consensus 12 ~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 56 (162)
T 2p5v_A 12 DIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQ 56 (162)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEee
Confidence 56788888877889999999987644 44445788999999974
No 492
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=20.34 E-value=1.5e+02 Score=22.74 Aligned_cols=43 Identities=9% Similarity=0.079 Sum_probs=33.0
Q ss_pred HHHHHHhcCcCCCCCHHHHHhhcC--chhhhhHHHHHhhCCcEeeC
Q 018851 72 EVQLFLAVPAEGSISKDELQKKLD--PAVFKIGCSQAGKNKWVEMG 115 (349)
Q Consensus 72 E~rl~~~l~~~g~~~~~el~~~~~--~~~~~ig~g~~~k~~wi~i~ 115 (349)
-.+|+..|.. +++++.||.+.+| ++...--+..+.+.|+|...
T Consensus 27 r~~IL~~L~~-~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~ 71 (108)
T 2kko_A 27 RLQILDLLAQ-GERAVEAIATATGMNLTTASANLQALKSGGLVEAR 71 (108)
T ss_dssp THHHHHHHTT-CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 4677888874 6789999998865 44556677899999999754
No 493
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=20.31 E-value=1.4e+02 Score=23.44 Aligned_cols=42 Identities=12% Similarity=0.328 Sum_probs=30.7
Q ss_pred HHHhcCcCCCCCHHHHHhhc--CchhhhhHHHHHhhCCcEeeCc
Q 018851 75 LFLAVPAEGSISKDELQKKL--DPAVFKIGCSQAGKNKWVEMGK 116 (349)
Q Consensus 75 l~~~l~~~g~~~~~el~~~~--~~~~~~ig~g~~~k~~wi~i~~ 116 (349)
|+..+...+++++.+|.+.+ .++...-.+..+-+.|||....
T Consensus 13 i~~l~~~~~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~~ 56 (142)
T 1on2_A 13 IYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEK 56 (142)
T ss_dssp HHHHHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHhhcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEee
Confidence 34444444569999999885 4556667889999999997754
No 494
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=20.19 E-value=1.5e+02 Score=30.50 Aligned_cols=49 Identities=10% Similarity=0.072 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHhC-------CCHHHHHHHHHHhccCCcEEEEee
Q 018851 2 AEEAILGYLEKNEQISDSGNFAAERG-------FDHNDVVNVIKSLHGFRYIDAQDI 51 (349)
Q Consensus 2 ~e~~iL~~L~~~~~~~~~~~la~~~g-------~~~~~v~~~~~~L~~kgli~~~~~ 51 (349)
...+||..+...+. .+..++|..+| ++..-...++..++..|++=+++.
T Consensus 495 ~~~~il~l~~~~g~-vT~~~la~~lg~~~~~~~Ws~~~A~e~L~~~e~eG~l~rDd~ 550 (566)
T 1w7p_D 495 VKEKLVDLIGDNPG-SDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDEGDLLIDKQ 550 (566)
T ss_dssp HHHHHHHHHTTSTT-CCHHHHHHHHSCSSSCCCBCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHhcCC-cCHHHHHHHhCCccccCcccHHHHHHHHHHHHHcCCEEEECC
Confidence 35678888876665 78899999999 999999999999999999988754
No 495
>2ns0_A Hypothetical protein; rhodococcus structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} SCOP: a.4.5.76
Probab=20.07 E-value=2.9e+02 Score=21.33 Aligned_cols=51 Identities=16% Similarity=0.093 Sum_probs=39.3
Q ss_pred HHHHHHHHHhhCCC--CCChHHHHHHhCCC-----HHHHHHHHHHhccCCcEEEEeee
Q 018851 2 AEEAILGYLEKNEQ--ISDSGNFAAERGFD-----HNDVVNVIKSLHGFRYIDAQDIK 52 (349)
Q Consensus 2 ~e~~iL~~L~~~~~--~~~~~~la~~~g~~-----~~~v~~~~~~L~~kgli~~~~~~ 52 (349)
+|..||.+|...+. -..+.|+|..++-+ ...|..++-.|...|-|.+.+.-
T Consensus 8 le~~Il~ll~~R~~~kTicPSEvARal~~~~Wr~lM~~vR~~A~~La~~G~v~I~qkG 65 (85)
T 2ns0_A 8 LEECIRALLDARADSASICPSDVARAVAPDDWRPLMEPVREAAGRLADAGEVEVTQKG 65 (85)
T ss_dssp HHHHHHHHHHHSCTTCCBCHHHHHHHHCTTSCGGGHHHHHHHHHHHHHTTSEEEEETT
T ss_pred HHHHHHHHHHHhCCCCCcCHHHHHHHhCchhHHHHhHHHHHHHHHHHHCCcEEEEECC
Confidence 68899999987553 24458899888632 35788899999999999987753
Done!