RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 018851
(349 letters)
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 508
Score = 384 bits (988), Expect = e-131
Identities = 170/349 (48%), Positives = 223/349 (63%), Gaps = 14/349 (4%)
Query: 3 EEAILGYLEKNEQISDSGNFAAERGFDHNDVVNVIKSLHGFRY-IDAQDIKRETWVLTGE 61
E +L LE ++ DS AAE G +H VV +KSL I+A+ + W LT E
Sbjct: 7 AELLLRRLEASDGGLDSAELAAELGMEHQAVVGAVKSLQALGEVIEAELRSTKHWELTAE 66
Query: 62 GKKYAAEGSPEVQLFLAVPAEGSISKDELQKKLDPAVFKIGCSQAGKNKWVEMGK----- 116
G++ A EGS E ++F ++P EG +++ EL + K+G S+A NKW+ + K
Sbjct: 67 GEEIAREGSHEARVFRSIPPEG-LAQSELMRL---PSGKVGFSKAMSNKWIRVDKSAADG 122
Query: 117 -QVSRKVQNVEDKVKDLLLQVQNGHA--LSKEEISSLKARKLIVPQTWKGYSVRKGPNYA 173
+V R V ++ED+V+ L V+ G A L ++E S L+ RKL+ T K Y V KG ++
Sbjct: 123 PRVFRVVDSMEDEVQRRLQLVRGGQAEKLGEKERSELRKRKLLAEVTLKTYWVSKGSAFS 182
Query: 174 PKRKKAATDLTRENLQKGDWKELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMG 233
K T+L+ E + G W++ FK YNF A G + GHLHPLLKVR Q + IFL+MG
Sbjct: 183 TSISKQETELSPEMISSGSWRDRPFKPYNFLAHGVLPDSGHLHPLLKVRSQFRQIFLEMG 242
Query: 234 FEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHES 293
F EMPT+NF+ESSFWNFDALFQPQQHPARD HDTFFL +P+ +LP DYV+RVKR H
Sbjct: 243 FTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQ 302
Query: 294 GGYGSRGYGYEWKREEANKNLLRTHTTAVSSRMLKALA-EKPFAPKKVF 341
GGYGS+GY Y WK +EA KNLLRTHTT+ S+R L LA +KPF P K F
Sbjct: 303 GGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYF 351
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 157 bits (397), Expect = 5e-43
Identities = 32/222 (14%), Positives = 74/222 (33%), Gaps = 46/222 (20%)
Query: 164 YSVRKGPNYAP-KRKKAATDLTRENLQKGDWKE---LEFKEYNFNAKGQPAEGGHLHPLL 219
+S P + +++ ++ ++ +K + ++ K+ N + G HP+
Sbjct: 9 HSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVN 68
Query: 220 KVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTF----------- 268
+ L+ +L+MGFEE V+ + F P+ D
Sbjct: 69 DTIENLRQAYLRMGFEEYINPVIVD--ERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLS 126
Query: 269 -----FLEEPSTTRELPEDYVERVKRVHE-------------------SGGYGSRG---- 300
+E+ ++ ++++ ++ S G +
Sbjct: 127 DEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDV 186
Query: 301 -YGYEWKREEANKNLLRTHTTAVSSRMLKALAEKPFAPKKVF 341
++ ++K LR+H T+ + L K P K+F
Sbjct: 187 FPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLF 228
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 155 bits (394), Expect = 1e-42
Identities = 30/210 (14%), Positives = 69/210 (32%), Gaps = 45/210 (21%)
Query: 175 KRKKAATDLTRENLQKGDW---KELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQ 231
+++ ++ ++ +K ++ K+ N + G HP+ + L+ +L+
Sbjct: 21 FKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVNDTIENLRQAYLR 80
Query: 232 MGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTF----------------FLEEPST 275
MGFEE V+ + F P+ D +E+
Sbjct: 81 MGFEEYINPVIVD--ERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGI 138
Query: 276 TRELPEDYVERVKRVHE-------------------SGGYGSRG-----YGYEWKREEAN 311
++ ++++ ++ S G + ++ ++
Sbjct: 139 KVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSS 198
Query: 312 KNLLRTHTTAVSSRMLKALAEKPFAPKKVF 341
K LR+H T+ + L K P K+F
Sbjct: 199 KLTLRSHMTSGWFLTVSDLMNKKPLPFKLF 228
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 150 bits (381), Expect = 7e-41
Identities = 30/210 (14%), Positives = 69/210 (32%), Gaps = 45/210 (21%)
Query: 175 KRKKAATDLTRENLQKGDW---KELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQ 231
+++ ++ ++ +K ++ K+ N + G HP+ + L+ +L+
Sbjct: 21 FKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVNDTIENLRQAYLR 80
Query: 232 MGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTF----------------FLEEPST 275
MGFEE V+ + F P+ D +E+
Sbjct: 81 MGFEEYINPVIVD--ERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGI 138
Query: 276 TRELPEDYVERVKRVHE-------------------SGGYGSRG-----YGYEWKREEAN 311
++ ++++ ++ S G + ++ ++
Sbjct: 139 KVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSS 198
Query: 312 KNLLRTHTTAVSSRMLKALAEKPFAPKKVF 341
K LR+H T+ + L K P K+F
Sbjct: 199 KLTLRSHMTSGWFLTVSDLMNKKPLPFKLF 228
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 148 bits (376), Expect = 3e-40
Identities = 30/210 (14%), Positives = 69/210 (32%), Gaps = 45/210 (21%)
Query: 175 KRKKAATDLTRENLQKGDW---KELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQ 231
+++ ++ ++ +K ++ K+ N + G HP+ + L+ +L+
Sbjct: 21 FKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVNDTIENLRQAYLR 80
Query: 232 MGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTF----------------FLEEPST 275
MGFEE V+ + F P+ D +E+
Sbjct: 81 MGFEEYINPVIVD--ERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGI 138
Query: 276 TRELPEDYVERVKRVHE-------------------SGGYGSRG-----YGYEWKREEAN 311
++ ++++ ++ S G + ++ ++
Sbjct: 139 KVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSS 198
Query: 312 KNLLRTHTTAVSSRMLKALAEKPFAPKKVF 341
K LR+H T+ + L K P K+F
Sbjct: 199 KLTLRSHMTSGWFLTVSDLMNKKPLPFKLF 228
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta
homodimer, ligase; HET: FYA; 2.50A {Thermus
thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A
1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A*
2amc_A*
Length = 350
Score = 91.5 bits (228), Expect = 5e-21
Identities = 45/141 (31%), Positives = 62/141 (43%), Gaps = 35/141 (24%)
Query: 207 GQPAEGGHLHPLLKVRKQLKDIFLQMGFE--EMPTNNFVESSFWNFDALFQPQQHPARDS 264
G G LHP+ + ++L +IF +G++ E P VES F+NFDAL P+ HPARD
Sbjct: 92 GASLFSGGLHPITLMERELVEIFRALGYQAVEGPE---VESEFFNFDALNIPEHHPARDM 148
Query: 265 HDTFFLEEPSTTRELPEDYVERVKRVHESGGYGSRGYGYEWKREEANKNLLRTHTTAVSS 324
DTF+L E P E + LLRTHT+ +
Sbjct: 149 WDTFWLTGEGFRLEGPL------------------------GEEVEGRLLLRTHTSPMQV 184
Query: 325 RMLKALAEKP----FAPKKVF 341
R + +A P P +VF
Sbjct: 185 RYM--VAHTPPFRIVVPGRVF 203
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer,
phenylalanine, aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus
haemolyticus} PDB: 2rhs_A*
Length = 294
Score = 90.0 bits (224), Expect = 9e-21
Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 48/141 (34%)
Query: 207 GQPAEGGHLHPLLKVRKQLKDIFLQMGFE--EMPTNNFVESSFWNFDALFQPQQHPARDS 264
+ G HPL + ++++D+FL +G+E + VE ++NF+AL P+ HPARD
Sbjct: 44 SRQISIGSKHPLTRTVEEIEDLFLGLGYEIVDGYE---VEQDYYNFEALNLPKSHPARDM 100
Query: 265 HDTFFLEEPSTTRELPEDYVERVKRVHESGGYGSRGYGYEWKREEANKNLLRTHTTAVSS 324
D+F++ + + L+RTHT+ V +
Sbjct: 101 QDSFYITD---------------------------------------EILMRTHTSPVQA 121
Query: 325 R-MLKALAEKPF---APKKVF 341
R M K + P P KV+
Sbjct: 122 RTMEKRNGQGPVKIICPGKVY 142
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold,
RRM domain, RNA recogntion, aminoacyl-tRNA synthetase,
ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB:
3hfv_A* 3teg_A* 3tup_A
Length = 415
Score = 88.8 bits (220), Expect = 8e-20
Identities = 27/143 (18%), Positives = 48/143 (33%), Gaps = 47/143 (32%)
Query: 207 GQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNF--------VESSFWNFDALFQPQQ 258
G+ HPL +++++K+ F + T F V +++ NFD+L P
Sbjct: 39 GRNLHNQQHHPLWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPAD 98
Query: 259 HPARDSHDTFFLEEPSTTRELPEDYVERVKRVHESGGYGSRGYGYEWKREEANKNLLRTH 318
HP+R D ++L ++LR H
Sbjct: 99 HPSRKKGDNYYLNRT---------------------------------------HMLRAH 119
Query: 319 TTAVSSRMLKALAEKPFAPKKVF 341
T+A +L A + V+
Sbjct: 120 TSAHQWDLLHAGLDAFLVVGDVY 142
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA
complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB:
2du4_A 2du5_A* 2du6_A*
Length = 534
Score = 89.1 bits (221), Expect = 1e-19
Identities = 18/135 (13%), Positives = 40/135 (29%), Gaps = 35/135 (25%)
Query: 207 GQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHD 266
+ + + K L++IF + E+ + + S+ + L + +
Sbjct: 110 EKIRQIEAITKREVDSKPLQEIFHRYKKGEIDGD---DLSYLIAEVLDVDDITAVKILDE 166
Query: 267 TFFLEEPSTTRELPEDYVERVKRVHESGGYGSRGYGYEWKREEANKNLLRTHTTAVSSRM 326
F ++ + ++ LR+H T
Sbjct: 167 VF--------------------------------PEFKELKPISSTLTLRSHMTTGWFIT 194
Query: 327 LKALAEKPFAPKKVF 341
L +A+K P K+F
Sbjct: 195 LSHIADKLPLPIKLF 209
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP;
3.02A {Escherichia coli}
Length = 327
Score = 84.9 bits (211), Expect = 7e-19
Identities = 37/142 (26%), Positives = 54/142 (38%), Gaps = 52/142 (36%)
Query: 207 GQPAEGGHLHPLLKVRKQLKDIFLQMGFE--EMPTNNFVESSFWNFDALFQPQQHPARDS 264
G+ E G LHP+ + +++ F ++GF P +E + NFDAL P HPAR
Sbjct: 98 GRRIENGGLHPVTRTIDRIESFFGELGFTVATGPE---IEDDYHNFDALNIPGHHPARAD 154
Query: 265 HDTFFLEEPSTTRELPEDYVERVKRVHESGGYGSRGYGYEWKREEANKNLLRTHTTAVSS 324
HDTF+ + LLRT T+ V
Sbjct: 155 HDTFWFDT---------------------------------------TRLLRTQTSGVQI 175
Query: 325 R-MLKALAEKP----FAPKKVF 341
R M ++P AP +V+
Sbjct: 176 RTMKA---QQPPIRIIAPGRVY 194
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural
genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Length = 549
Score = 81.9 bits (202), Expect = 2e-17
Identities = 16/134 (11%), Positives = 40/134 (29%), Gaps = 35/134 (26%)
Query: 208 QPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDT 267
+ + + + +++L+++ + + + F AL + +
Sbjct: 123 EIIKNLGIDIDEEKKERLREVLHLYKKGAIDGD---DLVFEIAKALNVSNEMGLKVLETA 179
Query: 268 FFLEEPSTTRELPEDYVERVKRVHESGGYGSRGYGYEWKREEANKNLLRTHTTAVSSRML 327
F ++ + E+ LR+H T+ L
Sbjct: 180 F--------------------------------PEFKDLKPESTTLTLRSHMTSGWFITL 207
Query: 328 KALAEKPFAPKKVF 341
+L +K P K+F
Sbjct: 208 SSLIKKRKLPLKLF 221
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B
O-methyl tyrosine binding, magnesium binding,
aminoacylatio esterification; HET: 0A1 ANP; 1.75A
{Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A*
2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A*
Length = 290
Score = 57.2 bits (138), Expect = 1e-09
Identities = 19/162 (11%), Positives = 39/162 (24%), Gaps = 20/162 (12%)
Query: 197 EFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQM--GFEEMPTNNFVESSFWNFDALF 254
+ A L + +I L F E+ + + + ++
Sbjct: 13 LVPRGSHGASAPALTKSQTDRLEVLLNPKDEISLNSGKPFRELE-SELLSRRKKDLQQIY 71
Query: 255 QPQQHPARDSHDTFFLEEPSTTRELPEDY---------VERVKRVHESGGYGSRGYGYEW 305
++ LE D + ++ + G + +
Sbjct: 72 AEERENYL-----GKLER--EITRFFVDRGFLEIKSPILIPLEYIERMGI-DNDTELSKQ 123
Query: 306 KREEANKNLLRTHTTAVSSRMLKALAEKPFAPKKVFLHRSCF 347
LR T L+ L P K+F C+
Sbjct: 124 IFRVDKNFCLRPMLTPNLYNYLRKLDRALPDPIKIFEIGPCY 165
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.1 bits (116), Expect = 2e-06
Identities = 43/319 (13%), Positives = 100/319 (31%), Gaps = 82/319 (25%)
Query: 11 EKNEQISDSGNFAAERGFDHNDV-------VNVIKSLHGFRYIDAQDIKRETWVL----T 59
E+ + + + +R +ND V+ ++ R +++ VL
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR-QALLELRPAKNVLIDGVL 159
Query: 60 GEGKKYAAEGSPEVQLFLAVPAEGSISKDELQKKLDPAVF--KIG--------------- 102
G GK + +A+ ++Q K+D +F +
Sbjct: 160 GSGKTW-----------VALDV---CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 103 CSQAGKN--KWVEMGKQVSRKVQNVEDKVKDLLLQVQNGHAL-------SKEEISS--LK 151
Q N + + ++ +++ +++ LL + L + + ++ L
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265
Query: 152 ARKLIVPQTWKGYSVRKGPNYAPKRKKAATDLTRENLQKGDWKELEFKEYNFNAKGQPAE 211
+ L+ T + V + A + D L + K L K + + P E
Sbjct: 266 CKILL---TTRFKQVTDFLS-AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 212 GGHLHPL--------LKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARD 263
+P ++ D + + +++ +ESS + L +P ++ R
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL--TTIIESS---LNVL-EPAEY--RK 373
Query: 264 SHDTFFLEEPSTTRELPED 282
D + P
Sbjct: 374 MFDRLSV--------FPPS 384
Score = 34.1 bits (77), Expect = 0.073
Identities = 38/289 (13%), Positives = 84/289 (29%), Gaps = 83/289 (28%)
Query: 32 DVVNVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAAEGSPEVQLFLAVPAEGSISKDELQ 91
+V N + +A ++ + + T +V FL+ IS D
Sbjct: 252 NVQNA-------KAWNAFNLSCKILLTTRF---------KQVTDFLSAATTTHISLDHHS 295
Query: 92 KKLDP----AVFKIGCSQAGKNKWVEMGKQVSRKVQNVEDKVKDLLLQVQNGHALSKEEI 147
L P ++ K+++ + +DL +V + I
Sbjct: 296 MTLTPDEVKSLLL---------KYLDC-------------RPQDLPREVLTTNPRRLSII 333
Query: 148 SSLKARKLIVPQTWKGYSVRKGPNYAPKRKKAATDLTRENLQKGDWKELEFKEYN-FNAK 206
+ L WK + + + + L+ +++++ F + F
Sbjct: 334 AESIRDGLATWDNWKHVNC--------DKLTTIIESSLNVLEPAEYRKM-FDRLSVFP-- 382
Query: 207 GQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMP--TNNFVESSFWNFDALFQPQQHPARDS 264
H+ P + L I+ + ++ N + S L + Q + S
Sbjct: 383 ----PSAHI-P-TIL---LSLIWFDVIKSDVMVVVNKLHKYS------LVEKQPKESTIS 427
Query: 265 -HDTFFL------EEPSTTRELPEDYVERVKRVHESGGYG---SRGYGY 303
+ E + R + + Y + + +S Y Y
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHY--NIPKTFDSDDLIPPYLDQYFY 474
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 40.3 bits (93), Expect = 2e-04
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 8/35 (22%)
Query: 47 DAQDIKRETWVLTGEGKKYAAEGSPEVQLFLAVPA 81
+ Q +K+ L K YA + +P LA+ A
Sbjct: 18 EKQALKK----LQASLKLYADDSAPA----LAIKA 44
Score = 32.6 bits (73), Expect = 0.079
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 18/45 (40%)
Query: 144 KEEISSLKAR-KLIVPQTWKGYSVRKGPNYAPKRKKA-ATDLTRE 186
K+ + L+A KL Y+ + AP A A T E
Sbjct: 19 KQALKKLQASLKL--------YA----DDSAP----ALAIKATME 47
Score = 28.4 bits (62), Expect = 2.0
Identities = 6/40 (15%), Positives = 12/40 (30%), Gaps = 19/40 (47%)
Query: 222 RKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPA 261
++ LK + ++S L+ PA
Sbjct: 19 KQALKKL---------------QASL----KLYADDSAPA 39
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 0.001
Identities = 47/283 (16%), Positives = 87/283 (30%), Gaps = 100/283 (35%)
Query: 23 AAERGFDHNDVVNVIKSLHGFRYID--AQDIKRETWVLTGEGKKYAAEGSPEVQLFLAVP 80
AA+ ++ D N K +GF +D + T GE K E +
Sbjct: 1641 AAQDVWNRAD--NHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSA--MIFETI 1696
Query: 81 AEGSISKDELQKKLD----------------------PAVFKIGCSQAGKNKWVEMGKQV 118
+G + +++ K+++ PA+ + + + ++
Sbjct: 1697 VDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAA-----FEDL---- 1747
Query: 119 SRKVQNVEDKVKDLLLQVQNGH-------------ALSKEE-ISSLKAR-KLI---VPQT 160
K + + GH +S E + + R + VP+
Sbjct: 1748 --KSKGLIPADATFA-----GHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRD 1800
Query: 161 WKGYSVRKGPNYA-----PKRKKAATDLTRENLQK---------GDWKELEFKEY-NFNA 205
G S NY P R A ++E LQ G E N+N
Sbjct: 1801 ELGRS-----NYGMIAINPGR--VAASFSQEALQYVVERVGKRTG-----WLVEIVNYNV 1848
Query: 206 KG-QPAEGGHLHPL---------LKVRK-QLKDIFLQMGFEEM 237
+ Q G L L +K++K + ++ + EE+
Sbjct: 1849 ENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
Score = 37.7 bits (87), Expect = 0.006
Identities = 21/128 (16%), Positives = 35/128 (27%), Gaps = 34/128 (26%)
Query: 224 QLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDY 283
QL++ F + L +P + A D +EP+T EL +
Sbjct: 32 QLQEQFNK--------------------ILPEPTEGFAAD-------DEPTTPAELVGKF 64
Query: 284 VERVKRVHESGGYGSRGYGYEWKREEANKNLLRT---HTTAVSSRMLKALAEKPFAPKKV 340
+ V + E G E L H A L + K
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK---LLQENDTTLVKTKE 121
Query: 341 FLHRSCFQ 348
+ ++
Sbjct: 122 LI-KNYIT 128
Score = 32.3 bits (73), Expect = 0.30
Identities = 50/289 (17%), Positives = 91/289 (31%), Gaps = 107/289 (37%)
Query: 75 LFLAVPAEGSISKDELQKKLDPAV---FKIG--CSQAGKNKWVEMGKQVSRKVQNVEDK- 128
L AV + S + + A+ F IG C +A N + + ++N E
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPP-SILEDSLENNEGVP 335
Query: 129 -----VKDLLL-QVQ------NGHALSKEEIS-SLK--ARKLIV---PQTWKGY--SVRK 168
+ +L QVQ N H + +++ SL A+ L+V PQ+ G ++RK
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 169 GPNYAPKRKKAATDLTRENLQKGDWKELEFKEYNFNAKGQPAEGGHLH-PLLKVRKQLKD 227
AP + D +R + ++L+F F P H LL
Sbjct: 396 AK--AP----SGLDQSRIPFSE---RKLKF-SNRFLPVASP-----FHSHLLV------- 433
Query: 228 IFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERV 287
P ++ + + F + ++ P
Sbjct: 434 ----------PASDLINKDLVKNNVSFNAKD-----------IQIP-------------- 458
Query: 288 KRVH--ESGGYGSRGYGYEWKREEANKNLLRTHTTAVSSRMLKALAEKP 334
V+ G +L R + ++S R++ + P
Sbjct: 459 --VYDTFDG-----------------SDL-RVLSGSISERIVDCIIRLP 487
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 589
Score = 31.6 bits (72), Expect = 0.46
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 213 GHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDAL 253
+ PL K+ + L+ GF E T S D L
Sbjct: 388 ANQFPLNKLTELLRHDMAAAGFTEALTFALC-SQEDIADKL 427
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 28.7 bits (63), Expect = 3.1
Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 10/117 (8%)
Query: 227 DIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVER 286
+F + + + + W+ + + Q D+ P +PED +R
Sbjct: 195 TVFRPVSETCTDRSG-ISTGHWSGEVKDKNVQVVELPIVDSLHPRPPYLPLAVPEDLADR 253
Query: 287 VKRVHESGGYGSRGYGYEWKREEANKNLLRTHTTAVSSRMLKALAEKPFAPKKVFLH 343
+ RVH G W + K L+R + + +A + F + +H
Sbjct: 254 LVRVH--------GDPAVWWVSQFVKYLIR-PQPWLEKEIEEATKKLGFKHPVIGVH 301
>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold,
TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A
{Mus musculus} PDB: 3n50_A
Length = 402
Score = 28.7 bits (63), Expect = 3.5
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 234 FEEMPTNNFVESSFWNFD-ALFQPQQHPARDSHDTF--FLE 271
FE+ P +N +S+F++F AL+ Q P F F+E
Sbjct: 31 FEKQPPSNLRKSNFFHFVLALYDRQGQPVEIERTAFVGFVE 71
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.388
Gapped
Lambda K H
0.267 0.0611 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,353,818
Number of extensions: 318896
Number of successful extensions: 703
Number of sequences better than 10.0: 1
Number of HSP's gapped: 668
Number of HSP's successfully gapped: 33
Length of query: 349
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 255
Effective length of database: 4,077,219
Effective search space: 1039690845
Effective search space used: 1039690845
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.4 bits)