RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 018851
         (349 letters)



>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha
           subunit, PheS {Thermus thermophilus [TaxId: 274]}
          Length = 266

 Score =  100 bits (249), Expect = 4e-25
 Identities = 40/141 (28%), Positives = 58/141 (41%), Gaps = 29/141 (20%)

Query: 207 GQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHD 266
           G     G LHP+  + ++L +IF  +G++ +     VES F+NFDAL  P+ HPARD  D
Sbjct: 8   GASLFSGGLHPITLMERELVEIFRALGYQAVE-GPEVESEFFNFDALNIPEHHPARDMWD 66

Query: 267 TFFLEEPSTTRELPEDYVERVKRVHESGGYGSRGYGYEWKREEANKNLLRTHTTAVSSRM 326
           TF+L       E P                           E   + LLRTHT+ +  R 
Sbjct: 67  TFWLTGEGFRLEGP------------------------LGEEVEGRLLLRTHTSPMQVRY 102

Query: 327 LKALAEKPFAPKKVFLHRSCF 347
                     P ++ +    F
Sbjct: 103 ----MVAHTPPFRIVVPGRVF 119


>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp.,
           UC5319 [TaxId: 1931]}
          Length = 311

 Score = 29.0 bits (64), Expect = 0.80
 Identities = 9/90 (10%), Positives = 18/90 (20%), Gaps = 14/90 (15%)

Query: 215 LHPLLK-VRKQLKDIFLQMGFEEMPT--NNFVESSFWNFDALFQPQQHPAR--------- 262
             P       +       +G           +   + +  + F P    A          
Sbjct: 13  QSPDHARAEAEQLAWPRSLGLIRSDAAAERHLRGGYADLASRFYPHATGADLDLGVDLMS 72

Query: 263 --DSHDTFFLEEPSTTRELPEDYVERVKRV 290
                D  F        E  +   ++V   
Sbjct: 73  WFFLFDDLFDGPRGENPEDTKQLTDQVAAA 102


>d2tpta1 a.46.2.1 (A:1-70) Thymidine phosphorylase {Escherichia coli
           [TaxId: 562]}
          Length = 70

 Score = 24.7 bits (54), Expect = 5.0
 Identities = 8/21 (38%), Positives = 15/21 (71%)

Query: 130 KDLLLQVQNGHALSKEEISSL 150
           ++++ + ++GHALS EEI   
Sbjct: 5   QEIIRKKRDGHALSDEEIRFF 25


>d2bj7a1 a.43.1.3 (A:1-50) Nickel responsive regulator NikR,
           N-terminal domain {Archaeon Pyrococcus horikoshii
           [TaxId: 53953]}
          Length = 50

 Score = 23.9 bits (52), Expect = 5.6
 Identities = 6/21 (28%), Positives = 12/21 (57%)

Query: 279 LPEDYVERVKRVHESGGYGSR 299
           +P   +E+  ++ E  GY +R
Sbjct: 10  IPSKLLEKFDQIIEEIGYENR 30


>d1brwa1 a.46.2.1 (A:1-70) Pyrimidine nucleoside phosphorylase
           {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 70

 Score = 24.3 bits (53), Expect = 6.3
 Identities = 9/23 (39%), Positives = 17/23 (73%)

Query: 128 KVKDLLLQVQNGHALSKEEISSL 150
           ++ DL+ + ++G AL+KEEI  +
Sbjct: 2   RMVDLIAKKRDGKALTKEEIEWI 24


>d2hzaa1 a.43.1.3 (A:1-48) Nickel responsive regulator NikR,
           N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 48

 Score = 23.9 bits (52), Expect = 7.0
 Identities = 6/21 (28%), Positives = 12/21 (57%)

Query: 279 LPEDYVERVKRVHESGGYGSR 299
           L +D +E +  + +  GY +R
Sbjct: 8   LDDDLLETLDSLSQRRGYNNR 28


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.132    0.388 

Gapped
Lambda     K      H
   0.267   0.0547    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,306,951
Number of extensions: 61561
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 9
Length of query: 349
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 263
Effective length of database: 1,226,816
Effective search space: 322652608
Effective search space used: 322652608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.6 bits)