BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018852
(349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VD3|A Chain A, The Structure Of Histidine Inhibited Hisg From
Methanobacterium Thermoautotrophicum
pdb|2VD3|B Chain B, The Structure Of Histidine Inhibited Hisg From
Methanobacterium Thermoautotrophicum
Length = 289
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 137/267 (51%), Gaps = 28/267 (10%)
Query: 83 EIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLL 142
+IR+ +PSKGR++ + LL++ + +K R+ ++ Q +EV F R DI +
Sbjct: 4 KIRIAVPSKGRISEPAIRLLENAGVGLKDTVNRKLFSKT-QHPQIEVMFSRAADIPEFVA 62
Query: 143 SGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQM 202
G DLGI G D + E G D+ I+ D L YG L LA P+ +++R +
Sbjct: 63 DGAADLGITGYDLIVERGS---DVEILED-LKYGRASLVLAAPED------STIRGPEDI 112
Query: 203 PQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAMGIADAILDLVSSGT 262
P+ +AT F + +++++G+ V G+ E AP +G+AD I DL S+GT
Sbjct: 113 PRGAV-----IATEFPGITENYLREHGIDAEVVELT-GSTEIAPFIGVADLITDLSSTGT 166
Query: 263 TLRENNLKEIEGGVVLESQAVLVASRKSLIRRKGVLDATHEILERLEAHLRASGQFTVTA 322
TLR N+L+ I+ +LES L+A+R+S + G+++ E+ + + A G+ V
Sbjct: 167 TLRMNHLRVID--TILESSVKLIANRESYATKSGIIE---ELRTGIRGVIDAEGKRLVML 221
Query: 323 NMRGNSAEEVAERILSQTSFSGLQGPT 349
N+ + + V + G+ GPT
Sbjct: 222 NIDRKNLDRV------RALMPGMTGPT 242
>pdb|1H3D|A Chain A, Structure Of The E.Coli Atp-Phosphoribosyltransferase
pdb|1Q1K|A Chain A, Structure Of Atp-phosphoribosyltransferase From E. Coli
Complexed With Pr-atp
Length = 299
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 118/235 (50%), Gaps = 33/235 (14%)
Query: 78 ISERDEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDI 137
+++ +R+ + GR++ D+ +LL C + + ++ ++ +A + +++ R DI
Sbjct: 1 MTDNTRLRIAMQKSGRLSDDSRELLARCGIKI-NLHTQRLIAMAENMP-IDILRVRDDDI 58
Query: 138 VRKLLSGDLDLGIVGLDTVSE-----FGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFEN 192
++ G +DLGI+G + + E QG + LD+G CRLSLA P ++
Sbjct: 59 PGLVMDGVVDLGIIGENVLEEELLNRRAQGEDPRYFTLRRLDFGGCRLSLATPVDEAWDG 118
Query: 193 INSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTA--DGALEAAPAMGI 250
SL R+AT + +L +++ G + F + +G++E AP G+
Sbjct: 119 PLSL------------NGKRIATSYPHLLKRYLDQKG---ISFKSCLLNGSVEVAPRAGL 163
Query: 251 ADAILDLVSSGTTLRENNLKEIEGGVVLESQAVLVASRKSLIRRKGVLDATHEIL 305
ADAI DLVS+G TL N L+E+E V+ S+ LI+R G ++ + + L
Sbjct: 164 ADAICDLVSTGATLEANGLREVE---------VIYRSKACLIQRDGEMEESKQQL 209
>pdb|1NH7|A Chain A, Atp Phosphoribosyltransferase (Atp-Prtase) From
Mycobacterium Tuberculosis
pdb|1NH8|A Chain A, Atp Phosphoribosyltransferase (Atp-Prtase) From
Mycobacterium Tuberculosis In Complex With Amp And
Histidine
Length = 304
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 101/205 (49%), Gaps = 27/205 (13%)
Query: 84 IRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLS 143
+R+ +P+KG ++ ++L + ++ + + I ++N+E +F RPKDI + S
Sbjct: 22 LRVAVPNKGALSEPATEIL--AEAGYRRRTDSKDLTVIDPVNNVEFFFLRPKDIAIYVGS 79
Query: 144 GDLDLGIVGLDTVSEFG-QGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQM 202
G+LD GI G D V + G Q E L AL +G A P
Sbjct: 80 GELDFGITGRDLVCDSGAQVRERL-----ALGFGSSSFRYAAPA---------------G 119
Query: 203 PQWTAEK--PLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAMGIADAILDLVSS 260
WT +R+AT + L K + G++ V DGA+E + +G+ADAI D+V S
Sbjct: 120 RNWTTADLAGMRIATAYPNLVRKDLATKGIEATVIRL-DGAVEISVQLGVADAIADVVGS 178
Query: 261 GTTLRENNLKEIEGGVVLESQAVLV 285
G TL +++L G + +S+AVL+
Sbjct: 179 GRTLSQHDLVAF-GEPLCDSEAVLI 202
>pdb|2VD2|A Chain A, The Crystal Structure Of Hisg From B. Subtilis
Length = 214
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 93/192 (48%), Gaps = 29/192 (15%)
Query: 86 LGLPSKGRMAADTLDLLKDC--QLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLS 143
+ +P KGR+ + LL+ +L + + R+ + +P+ NL +P D+ +
Sbjct: 8 MAMP-KGRIFEEAAGLLRQAGYRLPEEFEDSRKLIIDVPE-ENLRFILAKPMDVTTYVEH 65
Query: 144 GDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMP 203
G D+GI G D + E + V++ LD + LA+ A +P
Sbjct: 66 GVADVGIAGKDVMLEEERD------VYEVLDLNISKCHLAV---------------AGLP 104
Query: 204 Q--WTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAMGIADAILDLVSSG 261
W+ P R+AT + + + ++ G + V +G++E AP +G+AD I+D+VS+G
Sbjct: 105 NTDWSGVAP-RIATKYPNVASSYFREQG-EQVEIIKLNGSIELAPLIGLADRIVDIVSTG 162
Query: 262 TTLRENNLKEIE 273
TL+EN L E E
Sbjct: 163 QTLKENGLVETE 174
>pdb|1Z7M|E Chain E, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7M|F Chain F, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7M|G Chain G, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7M|H Chain H, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7N|E Chain E, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
pdb|1Z7N|F Chain F, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
pdb|1Z7N|G Chain G, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
pdb|1Z7N|H Chain H, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
Length = 208
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 22/186 (11%)
Query: 90 SKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLG 149
+KGR+ LL++ V+ + QI +L++ F +P D++ L G +D+G
Sbjct: 7 TKGRIQKQVTKLLENADYDVEPILNLGRELQIKTKDDLQIIFGKPNDVITFLEHGIVDIG 66
Query: 150 IVGLDTVSE--FGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTA 207
VG DT+ E F E L L G C +LA Y F N N R
Sbjct: 67 FVGKDTLDENDFDDYYELL-----YLKIGQCIFALA--SYPDFSNKNFQRHK-------- 111
Query: 208 EKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAMGIADAILDLVSSGTTLREN 267
R+A+ + + K+ + + +G++E P +G+ADAI+D+V +G TL N
Sbjct: 112 ----RIASKYPRVTKKYFAQKQ-EDIEIIKLEGSVELGPVVGLADAIVDIVETGNTLSAN 166
Query: 268 NLKEIE 273
L+ IE
Sbjct: 167 GLEVIE 172
>pdb|1VE4|A Chain A, Atp-Phosphoribosyltransferase(Hisg) From Thermus
Thermophilus Hb8
Length = 206
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 102/208 (49%), Gaps = 26/208 (12%)
Query: 91 KGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGI 150
KGRM + ++LK L + +V + + + + + R KD+ + G ++G+
Sbjct: 12 KGRMFREAYEVLKRAGLDLPEVEGERTLLHGKE-GGVALLELRNKDVPIYVDLGIAEIGV 70
Query: 151 VGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKP 210
VG D + + G+ DL D L +G CRLSL I + G + +R
Sbjct: 71 VGKDVLLDSGR---DLFEPVD-LGFGACRLSL-IRRPG---DTGPIR------------- 109
Query: 211 LRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAMGIADAILDLVSSGTTLRENNLK 270
RVAT + + +K+ G V + G +E A G+ADA++D+V +G TLR L
Sbjct: 110 -RVATKYPNFTARLLKERGWAADVVELS-GNIELAAVTGLADAVVDVVQTGATLRAAGLV 167
Query: 271 EIEGGVVLESQAVLVASRKSLIRRKGVL 298
E+E V+ S A LV +R++L ++ VL
Sbjct: 168 EVE--VLAHSTARLVVNRQALKLKRAVL 193
>pdb|1USY|H Chain H, Atp Phosphoribosyl Transferase (Hisg:hisz) Complex From
Thermotoga Maritima
Length = 208
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 103/226 (45%), Gaps = 31/226 (13%)
Query: 84 IRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLS 143
++L +P KGR+ + LK + ++ + + + + ++ + RP D+ L+
Sbjct: 2 LKLAIP-KGRLEEKVMTYLKKTGVIFERES-----SILREGKDIVCFMVRPFDVPTYLVH 55
Query: 144 GDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPK-YGIFENINSLRELAQM 202
G D+G G D + E E +I + R+ LA PK GI E
Sbjct: 56 GVADIGFCGTDVLLE----KETSLIQPFFIPTNISRMVLAGPKGRGIPE----------- 100
Query: 203 PQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAMGIADAILDLVSSGT 262
EK R+AT F + ++ + G H G++E AP G++D I+D+ +G
Sbjct: 101 ----GEK--RIATKFPNVTQRYCESKGW-HCRIIPLKGSVELAPIAGLSDLIVDITETGR 153
Query: 263 TLRENNLKEIEGGVVLESQAVL--VASRKSLIRRKGVLDATHEILE 306
TL+ENNL+ ++ V+ + V+ V+ R + L+ E++E
Sbjct: 154 TLKENNLEILDEIFVIRTHVVVNPVSYRTKREKVVSFLEKLQEVIE 199
>pdb|1USY|E Chain E, Atp Phosphoribosyl Transferase (Hisg:hisz) Complex From
Thermotoga Maritima
pdb|1USY|F Chain F, Atp Phosphoribosyl Transferase (Hisg:hisz) Complex From
Thermotoga Maritima
pdb|1USY|G Chain G, Atp Phosphoribosyl Transferase (Hisg:hisz) Complex From
Thermotoga Maritima
Length = 208
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 102/226 (45%), Gaps = 31/226 (13%)
Query: 84 IRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLS 143
++L +P KGR+ + LK + ++ + + + + ++ + RP D+ L+
Sbjct: 2 LKLAIP-KGRLEEKVMTYLKKTGVIFERES-----SILREGKDIVCFMVRPFDVPTYLVH 55
Query: 144 GDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPK-YGIFENINSLRELAQM 202
G D+G G D + E E +I + R+ LA PK GI E
Sbjct: 56 GVADIGFCGTDVLLE----KETSLIQPFFIPTNISRMVLAGPKGRGIPE----------- 100
Query: 203 PQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAMGIADAILDLVSSGT 262
EK R+AT F + ++ + G H G++E AP G++D I+D+ +G
Sbjct: 101 ----GEK--RIATKFPNVTQRYCESKGW-HCRIIPLKGSVELAPIAGLSDLIVDITETGR 153
Query: 263 TLRENNLKEIEGGVVLESQAVL--VASRKSLIRRKGVLDATHEILE 306
TL+ENNL+ ++ V+ + V+ V+ R L+ E++E
Sbjct: 154 TLKENNLEILDEIFVIRTHVVVNPVSYRTKREEVVSFLEKLQEVIE 199
>pdb|1O64|A Chain A, Crystal Structure Of An Atp Phosphoribosyltransferase
pdb|1O64|B Chain B, Crystal Structure Of An Atp Phosphoribosyltransferase
Length = 219
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 102/226 (45%), Gaps = 31/226 (13%)
Query: 84 IRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLS 143
++L +P KGR+ + LK + ++ + + + + ++ + RP D+ L+
Sbjct: 3 LKLAIP-KGRLEEKVMTYLKKTGVIFERES-----SILREGKDIVCFMVRPFDVPTYLVH 56
Query: 144 GDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPK-YGIFENINSLRELAQM 202
G D+G G D + E E +I + R+ LA PK GI E
Sbjct: 57 GVADIGFCGTDVLLE----KETSLIQPFFIPTNISRMVLAGPKGRGIPE----------- 101
Query: 203 PQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAMGIADAILDLVSSGT 262
EK R+AT F + ++ + G H G++E AP G++D I+D+ +G
Sbjct: 102 ----GEK--RIATKFPNVTQRYCESKGW-HCRIIPLKGSVELAPIAGLSDLIVDITETGR 154
Query: 263 TLRENNLKEIEGGVVLESQAVL--VASRKSLIRRKGVLDATHEILE 306
TL+ENNL+ ++ V+ + V+ V+ R L+ E++E
Sbjct: 155 TLKENNLEILDEIFVIRTHVVVNPVSYRTKREEVVSFLEKLQEVIE 200
>pdb|1O63|A Chain A, Crystal Structure Of An Atp Phosphoribosyltransferase
pdb|1O63|B Chain B, Crystal Structure Of An Atp Phosphoribosyltransferase
Length = 219
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 100/226 (44%), Gaps = 31/226 (13%)
Query: 84 IRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLS 143
++L +P KGR+ LK + ++ + + + + ++ + RP D+ L+
Sbjct: 3 LKLAIP-KGRLEEKVXTYLKKTGVIFERES-----SILREGKDIVCFXVRPFDVPTYLVH 56
Query: 144 GDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPK-YGIFENINSLRELAQM 202
G D+G G D + E E +I + R LA PK GI E
Sbjct: 57 GVADIGFCGTDVLLE----KETSLIQPFFIPTNISRXVLAGPKGRGIPE----------- 101
Query: 203 PQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAMGIADAILDLVSSGT 262
EK R+AT F + ++ + G H G++E AP G++D I+D+ +G
Sbjct: 102 ----GEK--RIATKFPNVTQRYCESKGW-HCRIIPLKGSVELAPIAGLSDLIVDITETGR 154
Query: 263 TLRENNLKEIEGGVVLESQAVL--VASRKSLIRRKGVLDATHEILE 306
TL+ENNL+ ++ V+ + V+ V+ R L+ E++E
Sbjct: 155 TLKENNLEILDEIFVIRTHVVVNPVSYRTKREEVVSFLEKLQEVIE 200
>pdb|2AW5|A Chain A, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|B Chain B, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|C Chain C, Crystal Structure Of A Human Malic Enzyme
Length = 575
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 240 GALEAAPAMGIADAILDLVSSGTTLRENNLKEIEGGVVLESQAVLVASRKSLIRRKGVLD 299
GA EAA +GIA I+ + +E +K+I +++S+ ++V R SL + K
Sbjct: 312 GAGEAA--LGIAHLIVMALEKEGLPKEKAIKKI---WLVDSKGLIVKGRASLTQEKEKFA 366
Query: 300 ATHEILERLEA 310
HE ++ LEA
Sbjct: 367 HEHEEMKNLEA 377
>pdb|4FFX|A Chain A, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|B Chain B, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|C Chain C, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|D Chain D, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
Length = 487
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 15/74 (20%)
Query: 149 GIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAE 208
GI+ L S + N DLII+ +ALD L +PK R ++++ + E
Sbjct: 107 GIIHLGATSCYVGDNTDLIILRNALD-------LLLPKLA--------RVISRLADFAKE 151
Query: 209 KPLRVATGFTYLGP 222
+ GFT+ P
Sbjct: 152 RASLPTLGFTHFQP 165
>pdb|4FLC|A Chain A, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|B Chain B, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|C Chain C, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|D Chain D, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
Length = 487
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 15/74 (20%)
Query: 149 GIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAE 208
GI+ L S + N DLII+ +ALD L +PK R ++++ + E
Sbjct: 107 GIIHLGATSCYVGDNTDLIILRNALD-------LLLPKLA--------RVISRLADFAKE 151
Query: 209 KPLRVATGFTYLGP 222
+ GFT+ P
Sbjct: 152 RASLPTLGFTHFQP 165
>pdb|2J91|A Chain A, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|B Chain B, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|C Chain C, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|D Chain D, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
Length = 503
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 15/74 (20%)
Query: 149 GIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAE 208
GI+ L S + N DLII+ +ALD L +PK R ++++ + E
Sbjct: 126 GIIHLGATSCYVGDNTDLIILRNALD-------LLLPKLA--------RVISRLADFAKE 170
Query: 209 KPLRVATGFTYLGP 222
+ GFT+ P
Sbjct: 171 RASLPTLGFTHFQP 184
>pdb|2VD6|A Chain A, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|B Chain B, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|C Chain C, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|D Chain D, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate
Length = 503
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 15/74 (20%)
Query: 149 GIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAE 208
GI+ L S + N DLII+ +ALD L +PK R ++++ + E
Sbjct: 126 GIIHLGATSCYVGDNTDLIILRNALD-------LLLPKLA--------RVISRLADFAKE 170
Query: 209 KPLRVATGFTYLGP 222
+ GFT+ P
Sbjct: 171 RASLPTLGFTHFQP 184
>pdb|2JD4|A Chain A, Mouse Laminin Alpha1 Chain, Domains Lg4-5
pdb|2JD4|B Chain B, Mouse Laminin Alpha1 Chain, Domains Lg4-5
Length = 383
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 15/73 (20%)
Query: 34 FHISVASGPTTATNKPAAAVTCCVSSSQQFESHVS------VVNGNIDNRISERDEIRLG 87
FH++ +G TAT +P AA C ++H S V+GN +R
Sbjct: 259 FHVNNGAGRITATYQPRAARALCDGKWHTLQAHKSKHRIVLTVDGN---------SVRAE 309
Query: 88 LPSKGRMAADTLD 100
P +ADT D
Sbjct: 310 SPHTHSTSADTND 322
>pdb|2NXO|A Chain A, Crystal Structure Of Protein Sco4506 From Streptomyces
Coelicolor, Pfam Duf178
pdb|2NXO|B Chain B, Crystal Structure Of Protein Sco4506 From Streptomyces
Coelicolor, Pfam Duf178
pdb|2NXO|C Chain C, Crystal Structure Of Protein Sco4506 From Streptomyces
Coelicolor, Pfam Duf178
pdb|2NXO|D Chain D, Crystal Structure Of Protein Sco4506 From Streptomyces
Coelicolor, Pfam Duf178
Length = 291
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 118 VAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHD 171
+A+ L + E+ P+ + +L+ GDLD+G V T+ EF + +DL+ D
Sbjct: 26 LARTGTLLDFELTKDTPEKLSEQLVRGDLDIGPV---TLVEFLKNADDLVAFPD 76
>pdb|2YZY|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Thermus Thermophilus Hb8
Length = 200
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 296 GVLDATHEILERLEAHLRASGQFTVTANMRGNSAEE 331
G+ + EIL+R+E +L Q TV ++G EE
Sbjct: 3 GLAQSAQEILDRVEKNLSTPWQATVQGRIQGPGGEE 38
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,682,479
Number of Sequences: 62578
Number of extensions: 388433
Number of successful extensions: 1051
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1027
Number of HSP's gapped (non-prelim): 24
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)