Query 018852
Match_columns 349
No_of_seqs 161 out of 1138
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 07:03:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018852.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018852hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vd3_A ATP phosphoribosyltrans 100.0 5.6E-80 1.9E-84 591.4 22.7 240 82-349 3-242 (289)
2 1h3d_A ATP-phosphoribosyltrans 100.0 5.9E-79 2E-83 586.9 21.2 244 80-349 3-252 (299)
3 1nh8_A ATP phosphoribosyltrans 100.0 7E-79 2.4E-83 586.7 20.7 241 79-349 17-258 (304)
4 2vd2_A ATP phosphoribosyltrans 100.0 1.3E-70 4.3E-75 507.4 14.8 208 82-317 4-213 (214)
5 1ve4_A ATP phosphoribosyltrans 100.0 3.2E-70 1.1E-74 502.1 16.3 202 81-313 3-205 (206)
6 1z7m_E ATP phosphoribosyltrans 100.0 2.1E-70 7.3E-75 504.0 10.1 206 83-314 1-208 (208)
7 1o63_A ATP phosphoribosyltrans 100.0 1.2E-69 4.1E-74 502.0 12.9 204 82-317 1-204 (219)
8 3ix1_A N-formyl-4-amino-5-amin 97.8 2.9E-05 9.8E-10 70.9 7.3 159 135-310 45-216 (302)
9 3qsl_A Putative exported prote 97.8 5.8E-05 2E-09 69.0 9.3 163 133-310 73-255 (346)
10 2x26_A Periplasmic aliphatic s 97.0 0.00075 2.6E-08 61.3 5.8 165 127-309 34-210 (308)
11 3uif_A Sulfonate ABC transport 97.0 0.00098 3.3E-08 62.4 6.6 154 135-310 58-227 (348)
12 1wdn_A GLNBP, glutamine bindin 96.9 0.014 5E-07 48.8 12.8 143 128-289 44-192 (226)
13 3un6_A Hypothetical protein sa 96.9 0.0012 4.1E-08 61.7 6.1 159 134-311 92-264 (341)
14 2v25_A Major cell-binding fact 96.8 0.0031 1.1E-07 54.3 7.8 143 127-289 83-231 (259)
15 3ksx_A Nitrate transport prote 96.8 0.0025 8.5E-08 58.8 7.1 158 134-309 68-236 (324)
16 2iee_A ORF2, probable ABC tran 96.6 0.03 1E-06 49.6 12.6 143 128-289 66-216 (271)
17 2x7q_A Ca3427, possible thiami 96.5 0.01 3.5E-07 54.9 9.5 153 136-310 57-228 (321)
18 2pyy_A Ionotropic glutamate re 96.5 0.0092 3.2E-07 50.1 8.4 158 127-309 42-208 (228)
19 1ii5_A SLR1257 protein; membra 96.5 0.018 6E-07 48.7 10.0 160 127-309 46-212 (233)
20 4esw_A Pyrimidine biosynthesis 96.4 0.011 3.7E-07 55.3 9.1 161 133-310 47-229 (342)
21 3h7m_A Sensor protein; histidi 96.2 0.039 1.3E-06 46.5 10.7 143 127-289 52-200 (234)
22 3kzg_A Arginine 3RD transport 96.2 0.022 7.6E-07 48.8 9.2 121 128-267 46-168 (237)
23 4f3p_A Glutamine-binding perip 96.1 0.11 3.6E-06 45.0 13.3 158 128-309 65-228 (249)
24 1xt8_A Putative amino-acid tra 96.0 0.073 2.5E-06 47.5 11.9 142 127-289 88-235 (292)
25 2pvu_A ARTJ; basic amino acid 96.0 0.014 4.7E-07 51.7 6.9 157 127-309 82-248 (272)
26 2yjp_A Putative ABC transporte 95.9 0.022 7.4E-07 51.4 8.2 128 127-273 99-230 (291)
27 2yln_A Putative ABC transporte 95.8 0.012 4.2E-07 52.9 6.0 125 127-272 98-229 (283)
28 2vha_A Periplasmic binding tra 95.7 0.035 1.2E-06 49.3 8.6 143 127-289 65-218 (287)
29 3tql_A Arginine-binding protei 95.1 0.036 1.2E-06 46.4 6.2 119 133-268 49-170 (227)
30 2y7i_A STM4351; arginine-bindi 95.0 0.05 1.7E-06 45.8 6.9 124 130-273 50-178 (229)
31 1zbm_A Hypothetical protein AF 94.8 0.093 3.2E-06 47.0 8.4 125 127-272 40-166 (280)
32 4ab5_A Transcriptional regulat 94.6 0.28 9.7E-06 40.5 10.3 195 79-314 5-211 (222)
33 3hv1_A Polar amino acid ABC up 94.5 0.051 1.7E-06 47.6 5.8 143 128-289 63-218 (268)
34 3del_B Arginine binding protei 94.1 0.1 3.4E-06 44.6 6.6 125 128-273 53-183 (242)
35 2czl_A Hypothetical protein TT 94.0 0.17 5.8E-06 45.1 8.3 157 126-310 31-199 (272)
36 3ho7_A OXYR; beta-alpha-barrel 93.8 0.29 1E-05 40.9 9.0 200 79-313 8-215 (232)
37 3kbr_A Cyclohexadienyl dehydra 93.8 0.29 9.9E-06 41.6 9.0 146 128-288 57-207 (239)
38 2pfy_A Putative exported prote 93.6 0.58 2E-05 43.3 11.4 139 132-293 46-220 (301)
39 2de3_A Dibenzothiophene desulf 93.5 0.14 4.9E-06 48.9 7.1 115 180-309 101-277 (365)
40 2pfz_A Putative exported prote 93.4 0.85 2.9E-05 42.2 12.1 85 191-293 128-219 (301)
41 1lst_A Lysine, arginine, ornit 93.4 0.064 2.2E-06 45.6 4.1 124 129-273 47-182 (239)
42 3mpk_A Virulence sensor protei 93.2 0.47 1.6E-05 41.7 9.7 135 134-289 81-223 (267)
43 2zzv_A ABC transporter, solute 92.8 0.4 1.4E-05 45.6 9.2 140 133-295 79-265 (361)
44 4i62_A Amino acid ABC transpor 92.7 0.23 7.7E-06 42.8 6.6 123 133-272 89-215 (269)
45 4eq9_A ABC transporter substra 92.6 0.16 5.6E-06 43.1 5.6 129 127-273 49-189 (246)
46 3k4u_A Binding component of AB 92.5 0.6 2E-05 40.0 9.1 145 129-289 48-198 (245)
47 3n5l_A Binding protein compone 92.5 0.55 1.9E-05 43.7 9.5 129 135-273 47-197 (310)
48 3qax_A Probable ABC transporte 92.4 0.16 5.4E-06 43.8 5.2 140 128-289 73-223 (268)
49 2q88_A EHUB, putative ABC tran 92.2 0.19 6.5E-06 43.3 5.5 125 131-268 58-185 (257)
50 2nxo_A Hypothetical protein SC 92.0 0.2 7E-06 45.8 5.8 159 126-310 34-213 (291)
51 3hn0_A Nitrate transport prote 92.0 0.31 1.1E-05 44.7 7.0 181 79-305 2-203 (283)
52 2hzl_A Trap-T family sorbitol/ 91.2 0.81 2.8E-05 43.5 9.2 141 132-294 77-257 (365)
53 4gvo_A LMO2349 protein; struct 91.2 0.61 2.1E-05 40.5 7.7 126 127-269 51-184 (243)
54 2g29_A Nitrate transport prote 91.2 0.41 1.4E-05 46.4 7.2 168 134-310 73-265 (417)
55 2vpn_A Periplasmic substrate b 90.3 1.3 4.4E-05 41.3 9.5 88 191-295 130-224 (316)
56 3fxq_A LYSR type regulator of 89.8 1.7 5.8E-05 38.6 9.5 169 124-313 118-296 (305)
57 1us5_A Putative GLUR0 ligand b 89.8 0.86 2.9E-05 41.0 7.7 146 82-257 19-187 (314)
58 3p7i_A PHND, subunit of alkylp 89.0 0.55 1.9E-05 44.2 6.0 129 135-273 57-206 (321)
59 4ddd_A Immunogenic protein; ss 89.0 0.49 1.7E-05 44.5 5.6 154 79-258 29-203 (327)
60 2hpg_A ABC transporter, peripl 88.4 1.8 6.3E-05 40.8 9.1 88 191-295 148-242 (327)
61 4dz1_A DALS D-alanine transpor 88.2 2.3 7.7E-05 37.0 9.0 125 129-269 72-204 (259)
62 1p99_A Hypothetical protein PG 88.1 2.6 8.7E-05 39.6 9.9 184 82-309 39-260 (295)
63 4ef1_A Pheromone COB1/lipoprot 88.1 0.95 3.2E-05 42.2 6.8 101 83-187 102-211 (246)
64 3tmg_A Glycine betaine, L-prol 85.6 0.33 1.1E-05 45.1 2.2 196 80-308 14-231 (280)
65 2i49_A Bicarbonate transporter 84.4 1.2 4.1E-05 43.7 5.7 163 134-309 76-272 (429)
66 2esn_A Probable transcriptiona 83.4 3.2 0.00011 36.6 7.7 163 125-309 128-302 (310)
67 3i6v_A Periplasmic His/Glu/Gln 82.8 1.9 6.4E-05 36.9 5.7 135 128-289 47-187 (232)
68 2f5x_A BUGD; periplasmic bindi 81.5 5.1 0.00018 37.8 8.7 126 139-272 65-208 (312)
69 1uth_A LYSR-type regulatory pr 81.5 14 0.00049 32.9 11.3 170 125-316 132-310 (315)
70 3tqw_A Methionine-binding prot 81.0 6.5 0.00022 36.5 8.9 97 84-187 103-206 (240)
71 2dvz_A BUGE, putative exported 80.9 7.7 0.00026 36.6 9.6 94 175-273 112-213 (314)
72 4got_A Methionine-binding lipo 80.9 3.8 0.00013 38.2 7.4 102 83-187 105-213 (249)
73 2y7p_A LYSR-type regulatory pr 80.1 9.9 0.00034 31.9 9.2 166 125-312 35-209 (218)
74 1i6a_A OXYR, hydrogen peroxide 80.0 3.3 0.00011 34.5 6.1 168 125-312 32-207 (219)
75 1xs5_A 29 kDa protein, membran 79.8 2.7 9.2E-05 38.3 5.9 75 84-162 102-181 (241)
76 3oxn_A Putative transcriptiona 79.2 7.3 0.00025 32.7 8.1 145 127-291 50-203 (241)
77 2qpq_A Protein BUG27; alpha/be 77.7 16 0.00054 34.0 10.6 126 139-272 56-199 (301)
78 2rin_A Putative glycine betain 76.5 2.4 8.2E-05 39.4 4.6 161 137-309 47-231 (298)
79 3g3k_A Glutamate receptor, ion 75.3 9.5 0.00032 32.7 7.8 153 135-309 72-239 (259)
80 2hxr_A HTH-type transcriptiona 74.6 12 0.00041 31.2 8.1 159 127-312 61-229 (238)
81 2v3u_A Glutamate receptor delt 73.8 6.3 0.00022 33.7 6.3 82 135-231 68-149 (265)
82 3kos_A HTH-type transcriptiona 72.3 6.2 0.00021 32.5 5.7 167 125-316 39-211 (219)
83 1mqi_A Glutamate receptor 2; G 71.5 11 0.00036 32.5 7.2 81 135-230 72-152 (263)
84 2fyi_A HTH-type transcriptiona 71.1 8.3 0.00028 32.3 6.3 105 124-244 40-150 (228)
85 3gxa_A Outer membrane lipoprot 71.0 7.8 0.00027 36.7 6.6 78 84-165 123-206 (275)
86 1sw5_A Osmoprotection protein 70.7 0.5 1.7E-05 43.1 -1.6 187 135-334 46-265 (275)
87 1ixc_A CBNR, LYSR-type regulat 70.5 5.2 0.00018 34.8 5.0 160 125-312 118-292 (294)
88 3ir1_A Outer membrane lipoprot 70.3 9.4 0.00032 35.6 6.9 78 84-165 101-184 (245)
89 3fzv_A Probable transcriptiona 69.6 12 0.00042 32.6 7.3 165 125-313 122-299 (306)
90 2rc8_A Glutamate [NMDA] recept 69.1 4.2 0.00014 36.5 4.2 195 91-309 69-274 (294)
91 2qsx_A Putative transcriptiona 67.0 27 0.00092 29.1 8.7 159 124-312 45-214 (218)
92 3k2d_A ABC-type metal ION tran 66.9 14 0.0005 34.1 7.4 76 84-163 106-186 (237)
93 2h9b_A HTH-type transcriptiona 66.3 6.2 0.00021 35.2 4.7 162 125-314 117-295 (312)
94 1p99_A Hypothetical protein PG 66.1 12 0.00042 34.9 6.9 75 84-162 138-217 (295)
95 4h5g_A Amino acid ABC superfam 64.4 11 0.00039 32.3 5.9 127 128-271 57-187 (243)
96 1al3_A Cys regulon transcripti 63.6 10 0.00035 34.0 5.6 165 124-310 119-293 (324)
97 1atg_A MODA, periplasmic molyb 63.1 3.4 0.00012 34.3 2.2 96 127-231 29-131 (231)
98 3up9_A Putative uncharacterize 61.4 4.7 0.00016 37.5 3.0 75 83-162 106-184 (245)
99 4ib2_A Putative lipoprotein; p 59.2 12 0.00042 34.8 5.4 75 84-162 110-189 (252)
100 2h98_A HTH-type transcriptiona 59.1 8.8 0.0003 34.5 4.4 163 125-315 117-296 (313)
101 3jv9_A OXYR, transcriptional r 58.6 17 0.00056 29.4 5.6 162 127-313 35-211 (219)
102 3hn0_A Nitrate transport prote 58.0 3.4 0.00012 37.6 1.4 55 85-157 98-155 (283)
103 3r26_A Molybdate-binding perip 55.9 7.4 0.00025 34.3 3.2 133 127-272 36-187 (237)
104 3gzg_A Molybdate-binding perip 53.5 6 0.00021 35.7 2.3 122 79-230 20-158 (253)
105 3l6g_A Betaine ABC transporter 53.5 8.2 0.00028 35.0 3.2 155 137-308 42-214 (256)
106 2g29_A Nitrate transport prote 47.5 26 0.00091 33.5 5.9 62 81-156 153-215 (417)
107 3un6_A Hypothetical protein sa 46.1 55 0.0019 29.8 7.6 64 78-156 148-213 (341)
108 2xwv_A Sialic acid-binding per 44.3 40 0.0014 31.2 6.4 87 191-294 133-226 (312)
109 2ql3_A Probable transcriptiona 43.9 25 0.00086 28.4 4.4 101 125-244 32-140 (209)
110 2i49_A Bicarbonate transporter 39.3 25 0.00087 34.2 4.4 60 83-156 163-223 (429)
111 3o66_A Glycine betaine/carniti 35.3 7.3 0.00025 36.3 -0.3 150 169-334 106-272 (282)
112 3isp_A HTH-type transcriptiona 34.9 52 0.0018 28.6 5.3 161 126-314 121-291 (303)
113 4ecf_A ABC-type phosphate tran 34.4 38 0.0013 30.4 4.5 97 127-228 34-140 (264)
114 3r6u_A Choline-binding protein 34.1 5.3 0.00018 37.3 -1.4 162 168-341 106-281 (284)
115 1yae_A Glutamate receptor, ion 30.5 39 0.0013 30.1 3.8 156 135-309 81-273 (312)
116 3hhf_B Transcriptional regulat 28.1 40 0.0014 27.0 3.1 166 124-314 33-209 (213)
117 2de3_A Dibenzothiophene desulf 27.7 25 0.00084 33.3 2.0 21 137-157 210-230 (365)
118 3ksx_A Nitrate transport prote 24.9 1E+02 0.0034 27.6 5.5 65 77-157 125-190 (324)
119 3cvg_A Putative metal binding 24.4 50 0.0017 29.8 3.4 95 80-189 18-116 (294)
120 3s5p_A Ribose 5-phosphate isom 24.2 17 0.00056 32.2 0.1 69 75-151 13-84 (166)
121 1iej_A Ovotransferrin; iron, m 24.0 82 0.0028 30.2 4.9 62 135-201 43-111 (332)
122 3h7m_A Sensor protein; histidi 23.8 1.1E+02 0.0039 24.8 5.2 69 217-290 37-106 (234)
123 2a5s_A N-methyl-D-aspartate re 23.4 88 0.003 27.5 4.7 160 135-309 95-265 (284)
124 1ryo_A Serotransferrin; iron t 23.2 48 0.0016 31.7 3.1 64 135-202 46-115 (327)
125 3uif_A Sulfonate ABC transport 23.0 1.1E+02 0.0036 27.9 5.4 64 77-156 113-177 (348)
126 4exl_A PBP 1, phosphate-bindin 22.0 90 0.0031 27.9 4.6 70 127-201 34-103 (265)
127 3ix1_A N-formyl-4-amino-5-amin 21.8 31 0.0011 30.6 1.4 72 217-289 21-95 (302)
128 1whz_A Hypothetical protein; a 21.5 27 0.00094 25.5 0.8 54 95-152 7-64 (70)
129 4esw_A Pyrimidine biosynthesis 20.4 50 0.0017 30.2 2.5 51 221-272 29-81 (342)
130 3qsl_A Putative exported prote 20.2 1.4E+02 0.0048 26.3 5.4 65 78-157 133-199 (346)
131 1h45_A Lactoferrin; metal tran 20.2 67 0.0023 30.7 3.4 72 125-201 33-112 (334)
132 3fxb_A Trap dicarboxylate tran 20.1 2.1E+02 0.0073 26.4 6.9 86 191-293 144-236 (326)
No 1
>2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase, HISG, histidine, magnesi transferase; HET: HIS; 2.45A {Methanobacterium thermoautotrophicum}
Probab=100.00 E-value=5.6e-80 Score=591.38 Aligned_cols=240 Identities=31% Similarity=0.534 Sum_probs=221.9
Q ss_pred CceEEEecCCCCchHHHHHHHHHCCCccCCCCCCceEEecCCCCCeEEEeecCCchhhhcccCceeeeeeccceecccCC
Q 018852 82 DEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQ 161 (349)
Q Consensus 82 ~~LrIALP~KGRL~e~t~~LL~~aGi~~~~~~~R~L~~~~~~~p~vev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~ 161 (349)
+||||||||||||++++++||++|||++...++|+|++.+++ ++++|+|+||+|||+||++|.+|+||||+|||.|++.
T Consensus 3 ~mL~iAlpkkGRL~e~t~~ll~~aGi~~~~~~~R~l~~~~~~-~~i~~~~~R~~DIp~yV~~G~~DlGItG~D~l~E~~~ 81 (289)
T 2vd3_A 3 PKIRIAVPSKGRISEPAIRLLENAGVGLKDTVNRKLFSKTQH-PQIEVMFSRAADIPEFVADGAADLGITGYDLIVERGS 81 (289)
T ss_dssp CCEEEEEESSSTTHHHHHHHHHHTTCCEESCCTTCSEEEESS-TTEEEEEECTTTHHHHHHHTSSSEEEEEHHHHHHHTC
T ss_pred ceEEEEECCCCccHHHHHHHHHHCCCCCCCCCCceeEEEcCC-CCEEEEEEChhhHHHHHhCCCccEEEeeeeeeeecCC
Confidence 479999998899999999999999999988656999999875 6899999999999999999999999999999999985
Q ss_pred CCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccCCCCCcEEEcCCCccHHHHHHhcCCceEEEEecCCc
Q 018852 162 GNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGA 241 (349)
Q Consensus 162 ~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~~~~lRVATkYPnlar~yf~~~Gi~~v~Ii~l~GS 241 (349)
+ ++++ .|||||+|||+||+|++ | ++++++||.. ++||||||||+|++||+++|++ ++||+++||
T Consensus 82 ~---v~el-~dLgfG~crl~vAvp~~--~-~~~~~~~l~~--------~~RIATkyp~l~~~yf~~~gi~-~~ii~l~Gs 145 (289)
T 2vd3_A 82 D---VEIL-EDLKYGRASLVLAAPED--S-TIRGPEDIPR--------GAVIATEFPGITENYLREHGID-AEVVELTGS 145 (289)
T ss_dssp C---CEEE-EECSCSCEEEEEEEETT--S-SCCSGGGCCT--------TCEEEESCHHHHHHHHHHTTCC-CEEEECSSC
T ss_pred C---ceEE-ecCCCCCEEEEEEEECC--C-CCCCHHHhcC--------CCEEEeCcHHHHHHHHHHcCCc-EEEEECCCc
Confidence 4 4444 48999999999999998 3 6667777621 4899999999999999999996 899999999
Q ss_pred cccccCCCcceeeeecccchhhHhhCCcEEecCceEEEEEEEEEeecchhhhhcCchhHHHHHHHHHHHHHhhcCeeEEE
Q 018852 242 LEAAPAMGIADAILDLVSSGTTLRENNLKEIEGGVVLESQAVLVASRKSLIRRKGVLDATHEILERLEAHLRASGQFTVT 321 (349)
Q Consensus 242 vElAP~lGlAD~IVDIVsTGtTLraNgLk~ie~g~IleSsA~LIaN~~s~~~k~~~~~~i~~li~rl~~vl~Ar~~~~v~ 321 (349)
+|+||.+|+||+||||||||+|||+|||++++ +|++|+|+||+|+.+++.|+ +.|++|++||+++++|++|+||+
T Consensus 146 vE~ap~~GlADaIvDivsTG~TLraNgL~~ie--~I~~ssA~LI~n~~s~~~k~---~~i~~l~~rl~~v~~A~~~~~~~ 220 (289)
T 2vd3_A 146 TEIAPFIGVADLITDLSSTGTTLRMNHLRVID--TILESSVKLIANRESYATKS---GIIEELRTGIRGVIDAEGKRLVM 220 (289)
T ss_dssp GGGTTTTTSCSEEEEEESSTHHHHHTTEEEEE--EEEEECEEEEECHHHHHHSH---HHHHHHHHHHHHHHHTTTEEEEE
T ss_pred eeeccCCCcccEEEEEeCChHHHHHCCCEEeE--EEEeeEEEEEEccchhhhHH---HHHHHHHHHHHHHHHhccEEEEE
Confidence 99999999999999999999999999999998 99999999999999986543 78999999999999999999999
Q ss_pred EecCCCCHHHHHHHhcccccCCCCCCCC
Q 018852 322 ANMRGNSAEEVAERILSQTSFSGLQGPT 349 (349)
Q Consensus 322 ~N~p~~~l~~v~~~~~~~~~lpgl~~PT 349 (349)
||+|+++++++.++ |||+++||
T Consensus 221 ~n~p~~~l~~v~~~------lPg~~~PT 242 (289)
T 2vd3_A 221 LNIDRKNLDRVRAL------MPGMTGPT 242 (289)
T ss_dssp EEEEGGGHHHHHHH------CCCSSSCE
T ss_pred EeCCHHHHHHHHHh------cccCCCCc
Confidence 99999999999995 99999998
No 2
>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis, glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A*
Probab=100.00 E-value=5.9e-79 Score=586.90 Aligned_cols=244 Identities=27% Similarity=0.476 Sum_probs=219.3
Q ss_pred CCCceEEEecCCCCchHHHHHHHHHCCCccCCCCCCceEEecCCCCCeEEEeecCCchhhhcccCceeeeeeccceeccc
Q 018852 80 ERDEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEF 159 (349)
Q Consensus 80 ~~~~LrIALP~KGRL~e~t~~LL~~aGi~~~~~~~R~L~~~~~~~p~vev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~ 159 (349)
+|.|||||||+||||++++++||++|||++.. ++|+|++.+++ ++++|+|+||+|||+||++|.+|+||||+|||.|+
T Consensus 3 ~~~~L~iAlp~KGRL~e~t~~ll~~aGi~~~~-~~R~l~~~~~~-~~v~~~~~R~~DIp~yV~~G~~DlGItG~D~l~E~ 80 (299)
T 1h3d_A 3 DNTRLRIAMQKSGRLSDDSRELLARCGIKINL-HTQRLIAMAEN-MPIDILRVRDDDIPGLVMDGVVDLGIIGENVLEEE 80 (299)
T ss_dssp --CCEEEEEESSSTTHHHHHHHHHHTTCCCCC-SSSCSEEECSS-SSEEEEEECGGGHHHHHHTTSSSEEEEEHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHHCCCCCCC-CCceeEeecCC-CCEEEEEeChhHHHHHHhCCCCcEEEeeeeeeecc
Confidence 35789999988999999999999999999987 67999999876 45999999999999999999999999999999998
Q ss_pred CC------CCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccCCCCCcEEEcCCCccHHHHHHhcCCceE
Q 018852 160 GQ------GNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHV 233 (349)
Q Consensus 160 ~~------~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~~~~lRVATkYPnlar~yf~~~Gi~~v 233 (349)
+. ...++++ +.|||||+|||+||+|++..|.+ +++|. ++||||||||+|++||+++|++ +
T Consensus 81 ~~~~~~~~~~~~v~e-l~dLgfG~crl~vAvp~~~~~~~---~~~l~---------g~RIATkyp~l~~~yf~~~gi~-~ 146 (299)
T 1h3d_A 81 LLNRRAQGEDPRYFT-LRRLDFGGCRLSLATPVDEAWDG---PLSLN---------GKRIATSYPHLLKRYLDQKGIS-F 146 (299)
T ss_dssp HHHHHHHTCCCCEEE-EEECSCCCEEEEEEEETTSCCCC---GGGGT---------TCEEEESCHHHHHHHHHHHTCC-C
T ss_pred ccccccccCCCcEEE-EeccCcCCEEEEEEEECCCCCCC---hHHhC---------CCEEEeCcHHHHHHHHHHcCCc-E
Confidence 52 1124444 45999999999999999855544 45543 3799999999999999999996 8
Q ss_pred EEEecCCccccccCCCcceeeeecccchhhHhhCCcEEecCceEEEEEEEEEeecchhhhhcCchhHHHHHHHHHHHHHh
Q 018852 234 VFSTADGALEAAPAMGIADAILDLVSSGTTLRENNLKEIEGGVVLESQAVLVASRKSLIRRKGVLDATHEILERLEAHLR 313 (349)
Q Consensus 234 ~Ii~l~GSvElAP~lGlAD~IVDIVsTGtTLraNgLk~ie~g~IleSsA~LIaN~~s~~~k~~~~~~i~~li~rl~~vl~ 313 (349)
+||+++||+|+||.+|+||+||||||||+|||+|||++++ +|++|+|+||+|+.+++.. +.+.|++|++||+++++
T Consensus 147 ~ii~l~GsvE~aP~~GlADaIvDivsTG~TLraNgL~~ie--~I~~SsA~LI~n~~s~~~~--k~~~i~~l~~rl~~v~~ 222 (299)
T 1h3d_A 147 KSCLLNGSVEVAPRAGLADAICDLVSTGATLEANGLREVE--VIYRSKACLIQRDGEMEES--KQQLIDKLLTRIQGVIQ 222 (299)
T ss_dssp EEEECSSCTTHHHHTTSCSEEEEEESSCHHHHHTTEEEEE--EEEEECEEEEEESSCCCHH--HHHHHHHHHHHHHHHHH
T ss_pred EEEECCCceeeccCCCccceEEecccCHHHHHHCCCEEeE--EEEeeEEEEEEeccccChh--HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998 9999999999999986521 23789999999999999
Q ss_pred hcCeeEEEEecCCCCHHHHHHHhcccccCCCCCCCC
Q 018852 314 ASGQFTVTANMRGNSAEEVAERILSQTSFSGLQGPT 349 (349)
Q Consensus 314 Ar~~~~v~~N~p~~~l~~v~~~~~~~~~lpgl~~PT 349 (349)
|++|+|++||+|++++++|.++ |||+++||
T Consensus 223 A~~~~~~~~n~p~~~l~~v~~~------lPg~~~PT 252 (299)
T 1h3d_A 223 ARESKYIMMHAPTERLDEVIAL------LPGAERPT 252 (299)
T ss_dssp HHHCEEEECCCCTTTHHHHHHH------SCCSSCCC
T ss_pred hhceeEEEEeCCHHHHHHHHHh------cCCCCCCc
Confidence 9999999999999999999994 99999999
No 3
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protei structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A*
Probab=100.00 E-value=7e-79 Score=586.66 Aligned_cols=241 Identities=27% Similarity=0.426 Sum_probs=214.4
Q ss_pred CCCCceEEEecCCCCchHHHHHHHHHCCCccCCCCCCceEEecCCCCCeEEEeecCCchhhhcccCceeeeeeccceecc
Q 018852 79 SERDEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSE 158 (349)
Q Consensus 79 ~~~~~LrIALP~KGRL~e~t~~LL~~aGi~~~~~~~R~L~~~~~~~p~vev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E 158 (349)
++.-||||||||||||++++++||++|||++.. ++|+|++.+++ ++++|+|+||+|||+||++|.+|+||||+|||.|
T Consensus 17 ~~~~~L~iAlPkKGRL~e~t~~ll~~aGi~~~~-~~R~l~~~~~~-~~i~~~~~R~~DIp~yV~~G~~DlGItG~D~l~E 94 (304)
T 1nh8_A 17 SSGMMLRVAVPNKGALSEPATEILAEAGYRRRT-DSKDLTVIDPV-NNVEFFFLRPKDIAIYVGSGELDFGITGRDLVCD 94 (304)
T ss_dssp ----CEEEEEESSSTTHHHHHHHHHHTTCCCCC-STTCSEEEETT-TTEEEEEECGGGHHHHHHHSSCSEEEEEHHHHHH
T ss_pred ccCeEEEEEECCCCccHHHHHHHHHHCCCCCCC-CCcceEeecCC-CCEEEEEEChhhHHHHHhCCCccEEEeeeeeeee
Confidence 345679999998999999999999999999988 57999999875 7899999999999999999999999999999999
Q ss_pred cCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccCCCCCcEEEcCCCccHHHHHHhcCCceEEEEec
Q 018852 159 FGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTA 238 (349)
Q Consensus 159 ~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~~~~lRVATkYPnlar~yf~~~Gi~~v~Ii~l 238 (349)
++.+ ++++ .|||||+|||+||+|++ +| ++++||. ++||||||||+|++||+++|++ ++||++
T Consensus 95 ~~~~---v~el-ldLgfG~crl~vAvp~~-~~---~~~~~l~---------~~RIATkYp~l~r~yf~~~gi~-~~Ii~l 156 (304)
T 1nh8_A 95 SGAQ---VRER-LALGFGSSSFRYAAPAG-RN---WTTADLA---------GMRIATAYPNLVRKDLATKGIE-ATVIRL 156 (304)
T ss_dssp HTCC---EEEE-EECSCCCEEEEEEEETT-SC---CCGGGGT---------TCEEEESCHHHHHHHHHHHTCC-CEEEEC
T ss_pred cCCC---ceEE-ecCCcccEEEEEEEECC-Cc---CChHHhC---------CCEEEeCcHHHHHHHHHHCCCe-EEEEEC
Confidence 9854 4444 48999999999999997 44 4566665 3799999999999999999997 899999
Q ss_pred CCccccccCCCcceeeeecccchhhHhhCCcEEecCceEEEEEEEEEeecchhhh-hcCchhHHHHHHHHHHHHHhhcCe
Q 018852 239 DGALEAAPAMGIADAILDLVSSGTTLRENNLKEIEGGVVLESQAVLVASRKSLIR-RKGVLDATHEILERLEAHLRASGQ 317 (349)
Q Consensus 239 ~GSvElAP~lGlAD~IVDIVsTGtTLraNgLk~ie~g~IleSsA~LIaN~~s~~~-k~~~~~~i~~li~rl~~vl~Ar~~ 317 (349)
+||+|+||.+|+||+||||||||+|||+|||+++ |++|++|+|+||+|+.+++. |+ +.|++|++||+++++|++|
T Consensus 157 ~GsvE~aP~~GlADaIvDiVsTG~TLraNgL~~i-~e~I~~SsA~LI~n~~s~~~~k~---~~i~~l~~rl~~vl~A~~~ 232 (304)
T 1nh8_A 157 DGAVEISVQLGVADAIADVVGSGRTLSQHDLVAF-GEPLCDSEAVLIERAGTDGQDQT---EARDQLVARVQGVVFGQQY 232 (304)
T ss_dssp SSCCTHHHHTTSCSEEEEEESSSHHHHHTTEEEE-EEEEEEECEEEEEEC-----------CHHHHHHHHHHHHHHHTTE
T ss_pred CCceeeccCCCcccEEEEEeCChHHHHHCcCEEc-ccEEEEEEEEEEEccccchhhhH---HHHHHHHHHHHHHHHhcce
Confidence 9999999999999999999999999999999999 33999999999999999876 43 6899999999999999999
Q ss_pred eEEEEecCCCCHHHHHHHhcccccCCCCCCCC
Q 018852 318 FTVTANMRGNSAEEVAERILSQTSFSGLQGPT 349 (349)
Q Consensus 318 ~~v~~N~p~~~l~~v~~~~~~~~~lpgl~~PT 349 (349)
+||+||+|++++++++++ |||+++||
T Consensus 233 ~~l~~nvp~~~l~~v~~~------lPg~~~PT 258 (304)
T 1nh8_A 233 LMLDYDCPRSALKKATAI------TPGLESPT 258 (304)
T ss_dssp EEEEEEEEGGGHHHHHHH------CCCSSSCE
T ss_pred EEEEEeCCHHHHHHHHHh------ccCCCCCe
Confidence 999999999999999995 99999998
No 4
>2vd2_A ATP phosphoribosyltransferase; HISG, glycosyltransferase, histidine biosynthes amino-acid biosynthesis; 2.85A {Bacillus subtilis}
Probab=100.00 E-value=1.3e-70 Score=507.38 Aligned_cols=208 Identities=25% Similarity=0.450 Sum_probs=188.9
Q ss_pred CceEEEecCCCCchHHHHHHHHHCCCccCCC--CCCceEEecCCCCCeEEEeecCCchhhhcccCceeeeeeccceeccc
Q 018852 82 DEIRLGLPSKGRMAADTLDLLKDCQLSVKQV--NPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEF 159 (349)
Q Consensus 82 ~~LrIALP~KGRL~e~t~~LL~~aGi~~~~~--~~R~L~~~~~~~p~vev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~ 159 (349)
.||||||| ||||++++++||++|||++... ++|+|++.+++ ++++|+|+||+|||+||++|.+|+||||+|||.|+
T Consensus 4 ~mL~iAlp-KGRL~e~t~~ll~~aGi~~~~~~~~~R~l~~~~~~-~~v~~~~~R~~DIp~yV~~G~~DlGItG~D~l~E~ 81 (214)
T 2vd2_A 4 KLLTMAMP-KGRIFEEAAGLLRQAGYRLPEEFEDSRKLIIDVPE-ENLRFILAKPMDVTTYVEHGVADVGIAGKDVMLEE 81 (214)
T ss_dssp CCEEEEEE-CSTTHHHHHHHHHHHTCCCCGGGTTCCCSEEEEGG-GTEEEEEECTTHHHHHHHHTSSSEEECCTHHHHSC
T ss_pred ccEEEEEc-ccccHHHHHHHHHHcCCCccCCCCCCCceEeecCC-CCEEEEEECchhHHHHHhCCCccEEEeeeeeeeec
Confidence 47999999 9999999999999999998863 46999999865 78999999999999999999999999999999999
Q ss_pred CCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccCCCCCcEEEcCCCccHHHHHHhcCCceEEEEecC
Q 018852 160 GQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTAD 239 (349)
Q Consensus 160 ~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~~~~lRVATkYPnlar~yf~~~Gi~~v~Ii~l~ 239 (349)
+.+ ++++ .|||||+|||+||+|++ | ++ ++ . ++||||||||+|++||+++|++ ++||+++
T Consensus 82 ~~~---v~el-~dLgfG~crl~vAvp~~--~-~~---~~---------~-~~RIATkyp~l~~~yf~~~gi~-~~ii~l~ 140 (214)
T 2vd2_A 82 ERD---VYEV-LDLNISKCHLAVAGLPN--T-DW---SG---------V-APRIATKYPNVASSYFREQGEQ-VEIIKLN 140 (214)
T ss_dssp SCS---SEEE-EECTTSCCEEEEEECTT--C-CC---CS---------S-SCEEEESCHHHHHHHHHHHCCC-CEEEECC
T ss_pred CCC---eEEe-eccccCCEEEEEEEECC--C-Ch---hh---------C-CcEEEECcHHHHHHHHHHcCCc-EEEEECC
Confidence 854 4444 48999999999999998 3 22 11 2 5899999999999999999996 8999999
Q ss_pred CccccccCCCcceeeeecccchhhHhhCCcEEecCceEEEEEEEEEeecchhhhhcCchhHHHHHHHHHHHHHhhcCe
Q 018852 240 GALEAAPAMGIADAILDLVSSGTTLRENNLKEIEGGVVLESQAVLVASRKSLIRRKGVLDATHEILERLEAHLRASGQ 317 (349)
Q Consensus 240 GSvElAP~lGlAD~IVDIVsTGtTLraNgLk~ie~g~IleSsA~LIaN~~s~~~k~~~~~~i~~li~rl~~vl~Ar~~ 317 (349)
||+|+||.+|+||+||||||||+|||+|||++++ +|++|+|+||+|+.+++.|+ +.|++|++||++++.|++.
T Consensus 141 GsvE~aP~~GlADaIvDivsTG~TLraNgL~~ie--~I~~ssA~LI~n~~s~~~k~---~~i~~l~~rl~~vl~a~~~ 213 (214)
T 2vd2_A 141 GSIELAPLIGLADRIVDIVSTGQTLKENGLVETE--HICDITSRFIVNPVSYRMKD---DVIDEMASRLSLVVEGETA 213 (214)
T ss_dssp SCTTHHHHTTSCSEEEEEECCSSSSCTTSCEEEE--EEEECCCEEEECHHHHHHHH---HHHHHHHHHHHHHHHHHC-
T ss_pred CceeeccCCCCceEEEEEeCCHHHHHHCCCEEeE--EEEeeEEEEEEcchHhHHHH---HHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999998 99999999999999987654 6899999999999999864
No 5
>1ve4_A ATP phosphoribosyltransferase; riken structural genomics/proteomics initiative structural genomics; 1.20A {Thermus thermophilus} SCOP: c.94.1.1
Probab=100.00 E-value=3.2e-70 Score=502.14 Aligned_cols=202 Identities=30% Similarity=0.444 Sum_probs=181.8
Q ss_pred CCceEEEecCCCCchHHHHHHHHHCCCccCCC-CCCceEEecCCCCCeEEEeecCCchhhhcccCceeeeeeccceeccc
Q 018852 81 RDEIRLGLPSKGRMAADTLDLLKDCQLSVKQV-NPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEF 159 (349)
Q Consensus 81 ~~~LrIALP~KGRL~e~t~~LL~~aGi~~~~~-~~R~L~~~~~~~p~vev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~ 159 (349)
++||||||| ||||++++++||++|||++... ++|+|++.++ ++++|+|+||+|||+||++|.+|+||||+|||.|+
T Consensus 3 ~~~L~iAlp-KGRL~e~t~~ll~~aGi~~~~~~~~R~l~~~~~--~~i~~~~~R~~DIp~yV~~G~~DlGItG~D~l~E~ 79 (206)
T 1ve4_A 3 RFALTVALP-KGRMFREAYEVLKRAGLDLPEVEGERTLLHGKE--GGVALLELRNKDVPIYVDLGIAEIGVVGKDVLLDS 79 (206)
T ss_dssp TSSEEEEEE-CSTTHHHHHHHHHHTTCCCCCC-----CEECCT--TSEEEEEECGGGHHHHHHTTSSSEEEEEHHHHHHC
T ss_pred CccEEEEEc-CcccHHHHHHHHHHcCCCCcCCCCCcceEecCC--CCeEEEEECchhHHHHHhCCCccEEEeeeeeeeec
Confidence 579999999 9999999999999999999885 2799999875 68999999999999999999999999999999999
Q ss_pred CCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccCCCCCcEEEcCCCccHHHHHHhcCCceEEEEecC
Q 018852 160 GQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTAD 239 (349)
Q Consensus 160 ~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~~~~lRVATkYPnlar~yf~~~Gi~~v~Ii~l~ 239 (349)
+.+ ++++ .|||||+|||+||+|++ | ++ . ++||||||||+|++||+++|++ ++||+++
T Consensus 80 ~~~---v~el-~dLgfG~crl~vAvp~~--~------~~---------~-~~RIATkyp~l~~~yf~~~gi~-~~ii~l~ 136 (206)
T 1ve4_A 80 GRD---LFEP-VDLGFGACRLSLIRRPG--D------TG---------P-IRRVATKYPNFTARLLKERGWA-ADVVELS 136 (206)
T ss_dssp CSC---CEEE-EECCCSCEEEEEEECTT--C------CS---------C-CCEEEESCHHHHHHHHHHTTCC-CEEEECS
T ss_pred CCC---eEEe-eccccCcEEEEEEEECC--c------cc---------C-CCEEEECchHHHHHHHHHCCCc-EEEEECC
Confidence 854 4444 48999999999999997 3 11 2 5899999999999999999996 8999999
Q ss_pred CccccccCCCcceeeeecccchhhHhhCCcEEecCceEEEEEEEEEeecchhhhhcCchhHHHHHHHHHHHHHh
Q 018852 240 GALEAAPAMGIADAILDLVSSGTTLRENNLKEIEGGVVLESQAVLVASRKSLIRRKGVLDATHEILERLEAHLR 313 (349)
Q Consensus 240 GSvElAP~lGlAD~IVDIVsTGtTLraNgLk~ie~g~IleSsA~LIaN~~s~~~k~~~~~~i~~li~rl~~vl~ 313 (349)
||+|+||.+|+||+||||||||+|||+|||++++ +|++|+|+||+|+.+++.|+ +.|++|++||+++++
T Consensus 137 GsvE~ap~~GlAD~IvDivsTG~TLraNgL~~ie--~I~~ssA~LI~n~~s~~~k~---~~i~~l~~rl~~vl~ 205 (206)
T 1ve4_A 137 GNIELAAVTGLADAVVDVVQTGATLRAAGLVEVE--VLAHSTARLVVNRQALKLKR---AVLKPLIQRLRELSG 205 (206)
T ss_dssp SCTHHHHHTTSSSEEEEEESSSHHHHHTTCEEEE--EEEEECEEEEECHHHHHHTH---HHHHHHHHHHHHTCC
T ss_pred CceeeccCCCCceEEEEeccCHHHHHHCCCEEeE--EEEeeEEEEEEcchHhHHHH---HHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999998 99999999999999987653 789999999999764
No 6
>1z7m_E ATP phosphoribosyltransferase; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: c.94.1.1 PDB: 1z7n_E*
Probab=100.00 E-value=2.1e-70 Score=504.03 Aligned_cols=206 Identities=27% Similarity=0.438 Sum_probs=181.6
Q ss_pred ceEEEecCCCCchHHHHHHHHHCCCccCCC--CCCceEEecCCCCCeEEEeecCCchhhhcccCceeeeeeccceecccC
Q 018852 83 EIRLGLPSKGRMAADTLDLLKDCQLSVKQV--NPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFG 160 (349)
Q Consensus 83 ~LrIALP~KGRL~e~t~~LL~~aGi~~~~~--~~R~L~~~~~~~p~vev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~ 160 (349)
||||||| ||||++++++||++|||++... ++|+|++.+++ +++|+|+||+|||+||++|.+|+||||+|||.|++
T Consensus 1 mL~iAlp-KGRL~e~t~~ll~~aGi~~~~~~~~~R~l~~~~~~--~i~~~~~R~~DIp~yV~~G~~DlGItG~D~l~E~~ 77 (208)
T 1z7m_E 1 MIKIAIT-KGRIQKQVTKLLENADYDVEPILNLGRELQIKTKD--DLQIIFGKPNDVITFLEHGIVDIGFVGKDTLDEND 77 (208)
T ss_dssp CCCEEEE-TTHHHHHHHHHHHTTTCCCCCC----CCSEECCTT--SCCEEEECHHHHHHHHHTTSCSEEEEEHHHHHHSS
T ss_pred CEEEEEc-cchhHHHHHHHHHHcCCCcccCCCCCcceEeecCC--CEEEEEECchhHHHHHhCCCccEEEeeeeeeeecC
Confidence 6999999 9999999999999999998874 46999999764 79999999999999999999999999999999997
Q ss_pred CCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccCCCCCcEEEcCCCccHHHHHHhcCCceEEEEecCC
Q 018852 161 QGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADG 240 (349)
Q Consensus 161 ~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~~~~lRVATkYPnlar~yf~~~Gi~~v~Ii~l~G 240 (349)
.+ +++++ .|||||+|||+||+|+++.| +++ .+++||||||||+|++||+++|++ ++||+++|
T Consensus 78 ~~--~v~el-~dLgfG~crl~vAvp~~~~~-----~~~---------~~~~RIATkyp~l~~~yf~~~gi~-~~ii~l~G 139 (208)
T 1z7m_E 78 FD--DYYEL-LYLKIGQCIFALASYPDFSN-----KNF---------QRHKRIASKYPRVTKKYFAQKQED-IEIIKLEG 139 (208)
T ss_dssp CC--CEEEE-EEETTCCCEEEEEECGGGGG-----CCC---------SSCEEEEESCHHHHHHHHHHTTCC-EEEEECSS
T ss_pred CC--CeEEe-eccccCCEEEEEEEECCCcc-----chh---------cCCCEEEECchHHHHHHHHHcCCc-eEEEECCC
Confidence 51 44444 48999999999999998322 222 236899999999999999999996 89999999
Q ss_pred ccccccCCCcceeeeecccchhhHhhCCcEEecCceEEEEEEEEEeecchhhhhcCchhHHHHHHHHHHHHHhh
Q 018852 241 ALEAAPAMGIADAILDLVSSGTTLRENNLKEIEGGVVLESQAVLVASRKSLIRRKGVLDATHEILERLEAHLRA 314 (349)
Q Consensus 241 SvElAP~lGlAD~IVDIVsTGtTLraNgLk~ie~g~IleSsA~LIaN~~s~~~k~~~~~~i~~li~rl~~vl~A 314 (349)
|+|+||.+|+||+||||||||+|||+|||++++ +|++|+|+||+|+.+++.|+ +.|++|++||++++.+
T Consensus 140 svE~ap~~GlAD~IvDivsTG~TLr~NgL~~ie--~I~~ssA~LI~n~~s~~~k~---~~i~~l~~rl~~vl~~ 208 (208)
T 1z7m_E 140 SVELGPVVGLADAIVDIVETGNTLSANGLEVIE--KISDISTRMIVNKSSFKFKK---DKIIEMVERLEDAQTN 208 (208)
T ss_dssp CTTHHHHTTSCSEEEEEESSSHHHHTTTCEEEE--EEEECCEEEEEEHHHHHHHH---HHHHHHHHHHCC----
T ss_pred ceeeccCCCcccEEEEEeCChHHHHHCCCEEeE--EEEeeEEEEEEcchHhHHHH---HHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999998 99999999999999987654 6899999999988753
No 7
>1o63_A ATP phosphoribosyltransferase; structural genomics; 2.00A {Thermotoga maritima} SCOP: c.94.1.1 PDB: 1o64_A 1usy_E* 1usy_H*
Probab=100.00 E-value=1.2e-69 Score=502.02 Aligned_cols=204 Identities=25% Similarity=0.391 Sum_probs=181.3
Q ss_pred CceEEEecCCCCchHHHHHHHHHCCCccCCCCCCceEEecCCCCCeEEEeecCCchhhhcccCceeeeeeccceecccCC
Q 018852 82 DEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQ 161 (349)
Q Consensus 82 ~~LrIALP~KGRL~e~t~~LL~~aGi~~~~~~~R~L~~~~~~~p~vev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~ 161 (349)
+||||||| ||||++++++||++|||++... .| ++. . +++++|+|+||+|||+||++|.+|+||||+|||.|++.
T Consensus 1 ~~L~iAlp-KGRL~e~t~~ll~~aGi~~~~~-~~-~~~-~--~~~i~~~~~R~~DIp~yV~~G~aDlGItG~D~l~E~~~ 74 (219)
T 1o63_A 1 SLLKLAIP-KGRLEEKVMTYLKKTGVIFERE-SS-ILR-E--GKDIVCFMVRPFDVPTYLVHGVADIGFCGTDVLLEKET 74 (219)
T ss_dssp --CEEEEE-CSTTHHHHHHHHHHHTCCEEEE-CS-SEE-E--ETTEEEEEECGGGHHHHHHTTSCSEEEEEHHHHHHSCC
T ss_pred CcEEEEec-CchhHHHHHHHHHHCCCCccCC-cC-eee-c--CCCeEEEEECchhHHHHHhCCCccEEEeeeEeeeecCC
Confidence 47999999 9999999999999999998874 45 443 3 36799999999999999999999999999999999986
Q ss_pred CCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccCCCCCcEEEcCCCccHHHHHHhcCCceEEEEecCCc
Q 018852 162 GNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGA 241 (349)
Q Consensus 162 ~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~~~~lRVATkYPnlar~yf~~~Gi~~v~Ii~l~GS 241 (349)
+ ++++ .|||||+|||+||+|+++.| ++ . ++||||||||+|++||+++|++ ++||+++||
T Consensus 75 ~---v~el-ldLgfG~crl~vAvp~~~~~------~~---------~-~~RIATkyp~l~r~yf~~~Gi~-~~Ii~l~Gs 133 (219)
T 1o63_A 75 S---LIQP-FFIPTNISRMVLAGPKGRGI------PE---------G-EKRIATKFPNVTQRYCESKGWH-CRIIPLKGS 133 (219)
T ss_dssp C---CBCC-SEEEEEEEEEEEEEETTTCC------CS---------S-CEEEEESCHHHHHHHHHHHTCC-EEEEECSSC
T ss_pred C---eeEE-eccccccEEEEEEEECCCcc------cc---------C-CcEEEECcHHHHHHHHHHCCCc-eEEEECCCc
Confidence 5 3333 49999999999999998322 11 2 5899999999999999999996 899999999
Q ss_pred cccccCCCcceeeeecccchhhHhhCCcEEecCceEEEEEEEEEeecchhhhhcCchhHHHHHHHHHHHHHhhcCe
Q 018852 242 LEAAPAMGIADAILDLVSSGTTLRENNLKEIEGGVVLESQAVLVASRKSLIRRKGVLDATHEILERLEAHLRASGQ 317 (349)
Q Consensus 242 vElAP~lGlAD~IVDIVsTGtTLraNgLk~ie~g~IleSsA~LIaN~~s~~~k~~~~~~i~~li~rl~~vl~Ar~~ 317 (349)
+|+||.+|+||+||||||||+|||+|||++++ +||+|+|+||+|+.+++.|+ +.|++|++||++++.++.|
T Consensus 134 vE~aP~~GlADaIvDivsTG~TLraNgL~~ie--~I~~SsA~LI~n~~s~~~k~---~~i~~l~~rl~~vl~~~~~ 204 (219)
T 1o63_A 134 VELAPIAGLSDLIVDITETGRTLKENNLEILD--EIFVIRTHVVVNPVSYRTKR---EEVVSFLEKLQEVIEHDSN 204 (219)
T ss_dssp TTHHHHHTSCSEEEEEESSSHHHHHTTEEEEE--EEEEEEEEEEECHHHHHHTH---HHHHHHHHHHHHHHHHHHH
T ss_pred eeeccCCCCcceeEEeeccHHHHHHCCCEEee--EEeeeEEEEEECchhhHHHH---HHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999998 99999999999999987643 7899999999999977654
No 8
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=97.83 E-value=2.9e-05 Score=70.88 Aligned_cols=159 Identities=14% Similarity=0.041 Sum_probs=99.8
Q ss_pred CchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccCCCCCcEEE
Q 018852 135 KDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVA 214 (349)
Q Consensus 135 ~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~~~~lRVA 214 (349)
.++...|..|.+|+|+++...+........+++.+. -.+......+.++++ .+|++++||++ +|||
T Consensus 45 ~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~l~~~~~---s~i~s~~DL~G---------k~i~ 110 (302)
T 3ix1_A 45 TDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVA--SVVRSPLNHVMFLAE---QDFDSPADLVG---------LTVG 110 (302)
T ss_dssp THHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEE--EEECSCCEEEEEEGG---GCCSSGGGGTT---------SEEE
T ss_pred chHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEEE--EEeccCCEEEEEECC---CCCCChHHcCC---------CEEE
Confidence 388899999999999999554433221112333221 112233467777776 68899999885 5887
Q ss_pred cCCC----ccHHHHHHhcCCc--eEEEEecCCccccccCCCcceeee--ecccchhhHhhCCcEEe--cCce--E-EEEE
Q 018852 215 TGFT----YLGPKFMKDNGLK--HVVFSTADGALEAAPAMGIADAIL--DLVSSGTTLRENNLKEI--EGGV--V-LESQ 281 (349)
Q Consensus 215 TkYP----nlar~yf~~~Gi~--~v~Ii~l~GSvElAP~lGlAD~IV--DIVsTGtTLraNgLk~i--e~g~--I-leSs 281 (349)
+.-. .+.++++++.|++ .++++.+....-.+-.-|-+|+++ -.......+++.|.... .... + --..
T Consensus 111 ~~~~~~~~~~~~~~l~~~Gl~~~~v~~~~~~~~~~~al~~G~vDa~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~ 190 (302)
T 3ix1_A 111 YPGIPVNEPILKTMVEAAGGDYEQVHLMDVGFELGASIVSGRADAVVGTYINHEYPVLKHEGHDISYFNPVDYGVPEYDE 190 (302)
T ss_dssp ECSCTTHHHHHHHHHHHTTCCGGGCEEEECTTCHHHHHHHSSSSEEEEEETTTHHHHHHHTTCCEEEECGGGTTCCCCCS
T ss_pred eCCCcchHHHHHHHHHHcCCCHHHeEEEecCccHHHHHhCCCCCEEEEeeecchHHHHHhcCCCceEeCHHHcCCCCCcc
Confidence 7543 3567888888984 478888744332222238899987 45566778888887543 1000 1 1134
Q ss_pred EEEEeecchhhhhcCchhHHHHHHHHHHH
Q 018852 282 AVLVASRKSLIRRKGVLDATHEILERLEA 310 (349)
Q Consensus 282 A~LIaN~~s~~~k~~~~~~i~~li~rl~~ 310 (349)
..+++++...+.++ +.++.+++.+..
T Consensus 191 ~~~~~~~~~~~~~p---~~v~~~~~a~~~ 216 (302)
T 3ix1_A 191 LVLISNEAYVEESG---EVLAAFWRAALK 216 (302)
T ss_dssp EEEEEEHHHHHHCH---HHHHHHHHHHHH
T ss_pred cEEEECHHHHHHCH---HHHHHHHHHHHH
Confidence 67888888877655 456666555543
No 9
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=97.83 E-value=5.8e-05 Score=69.03 Aligned_cols=163 Identities=12% Similarity=0.116 Sum_probs=102.5
Q ss_pred cCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccCCCCCcE
Q 018852 133 RPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLR 212 (349)
Q Consensus 133 R~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~~~~lR 212 (349)
-..++...|..|.+|+++.+............++..+ ..+..+ ....+.++++. ..+|++++||.+ +|
T Consensus 73 ~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~v~~~~-~~~i~s~~DL~G---------k~ 140 (346)
T 3qsl_A 73 GGSKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAF-ALQGRA-PMIGVGVSKKN-LPGYKGPADLKG---------RK 140 (346)
T ss_dssp SHHHHHHHHHTTSCSEEEEETHHHHHHHHTTCCEEEE-EESBSS-CCEEEEEETTT-CTTCCSGGGGTT---------CE
T ss_pred ChHHHHHHHHCCCCCEEccchHHHHHHHhCCCCeEEE-EecccC-CCcEEEEecCc-ccCCCChHHcCC---------CE
Confidence 3457888999999999999987664322111233222 223332 23456666651 127899999874 68
Q ss_pred EEcCCCc-----cHHHHHHhcCCc--eEEEEecCCcccccc--CCCcceeeeecccchhhHhhCC-cEEecCc-eE----
Q 018852 213 VATGFTY-----LGPKFMKDNGLK--HVVFSTADGALEAAP--AMGIADAILDLVSSGTTLRENN-LKEIEGG-VV---- 277 (349)
Q Consensus 213 VATkYPn-----lar~yf~~~Gi~--~v~Ii~l~GSvElAP--~lGlAD~IVDIVsTGtTLraNg-Lk~ie~g-~I---- 277 (349)
|++..+. +.+.++++.|++ .++++.+.+.-|+.. .-|-+|+++-.-.....+..+| ++++.+. .+
T Consensus 141 i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~G~vDa~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 220 (346)
T 3qsl_A 141 IGVTAPGSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGAVTALRSGQIDAISNTDPVVSMLETSGDIQIIVDTRTLKDTK 220 (346)
T ss_dssp EEESSTTSHHHHHHHHHHHHTTCCGGGSEEEECCSSHHHHHHHHHTSCSEEEEETTHHHHHHHTTCEEEEEECSSHHHHH
T ss_pred EEECCCCcHHHHHHHHHHHHcCCCHHHeEEEecCCcHHHHHHHHcCCccEEEecchhHHHHHhCCCeEEEEecccccchh
Confidence 8887544 457888999984 478888876555543 3478999887766777777776 5544210 00
Q ss_pred -----EEEEEEEEeecchhhhhcCchhHHHHHHHHHHH
Q 018852 278 -----LESQAVLVASRKSLIRRKGVLDATHEILERLEA 310 (349)
Q Consensus 278 -----leSsA~LIaN~~s~~~k~~~~~~i~~li~rl~~ 310 (349)
--....+++++..++.++ +.++.+++.+..
T Consensus 221 ~~~g~~~~~~~~~~~~~~~~~~p---~~~~~~~~a~~~ 255 (346)
T 3qsl_A 221 EIFGGNMPAGCLYAPQAFVDANP---NTAQALTNAIVR 255 (346)
T ss_dssp HHHSSCCCCEEEEEEHHHHHHCH---HHHHHHHHHHHH
T ss_pred hhcCCCCceEEEEECHHHHHHCH---HHHHHHHHHHHH
Confidence 113467888888776655 455666655543
No 10
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=97.01 E-value=0.00075 Score=61.30 Aligned_cols=165 Identities=16% Similarity=0.126 Sum_probs=93.8
Q ss_pred eEEEeecC-CchhhhcccCceeeeeeccceec-ccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCc
Q 018852 127 LEVWFQRP-KDIVRKLLSGDLDLGIVGLDTVS-EFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQ 204 (349)
Q Consensus 127 vev~~vR~-~DIP~yV~~G~aDlGIvG~DvL~-E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~ 204 (349)
+++..... .++-..+..|.+|+|++|..... ..... .++..+ ....+.....++.++++ .++.+++||.+
T Consensus 34 v~~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g-~~~~~~-~~~~~~~~~~~lv~~~~---~~i~s~~dL~G--- 105 (308)
T 2x26_A 34 ISWVEFPAGPQMLEALNVGSIDLGSTGDIPPIFAQAAG-ADLVYV-GVEPPKPKAEVILVAEN---SPIKTVADLKG--- 105 (308)
T ss_dssp EEEEECSSHHHHHHHHHHTSCSEEEECSHHHHHHHHTT-CCEEEE-EEECCCGGGEEEEEETT---CSCCSGGGGTT---
T ss_pred eEEEECCCcHHHHHHHHCCCCCEEcccCcHHHHHHhcC-CCeEEE-EEecCCCCceEEEEeCC---CCCCCHHHcCC---
Confidence 44444444 68899999999999999865422 11111 222211 12233333557777876 57888999885
Q ss_pred cCCCCCcEEEcCC----CccHHHHHHhcCCc--eEEEEecCCcccc--ccCCCcceeeeecccchhhH-hhCCcEEecC-
Q 018852 205 WTAEKPLRVATGF----TYLGPKFMKDNGLK--HVVFSTADGALEA--APAMGIADAILDLVSSGTTL-RENNLKEIEG- 274 (349)
Q Consensus 205 ~~~~~~lRVATkY----Pnlar~yf~~~Gi~--~v~Ii~l~GSvEl--AP~lGlAD~IVDIVsTGtTL-raNgLk~ie~- 274 (349)
++|++.- -.+.+++|++.|++ .++++... ..|+ +-.-|-+|+++---...+.+ +..+++++.+
T Consensus 106 ------k~i~~~~gs~~~~~l~~~l~~~Gl~~~~v~~~~~~-~~~~~~al~~G~vDa~~~~~~~~~~~~~~~~~~~l~~~ 178 (308)
T 2x26_A 106 ------HKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLT-PADARAAFQQGNVDAWAIWDPYYSAALLQGGVRVLKDG 178 (308)
T ss_dssp ------SEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECC-HHHHHHHHHTTSSSEEEEETTHHHHHHHHSSEEEEEES
T ss_pred ------CEEeeeCCCcHHHHHHHHHHHcCCCHHHeEEEecC-hHHHHHHHHcCCCCEEEecchhHHHHHhcCCcEEEecC
Confidence 5777632 12445678888984 35555543 3333 23457888876533334333 3456777642
Q ss_pred ceEEEEEEEEEeecchhhhhcCchhHHHHHHHHHH
Q 018852 275 GVVLESQAVLVASRKSLIRRKGVLDATHEILERLE 309 (349)
Q Consensus 275 g~IleSsA~LIaN~~s~~~k~~~~~~i~~li~rl~ 309 (349)
..+......+++++...+.++ +.++.+++.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~p---~~~~~~~~al~ 210 (308)
T 2x26_A 179 TDLNQTGSFYLAARPYAEKNG---AFIQGVLATFS 210 (308)
T ss_dssp TTSCCCCEEEEEEHHHHHHTH---HHHHHHHHHHH
T ss_pred CCcCCcceEEEEcHHHHHHCH---HHHHHHHHHHH
Confidence 113234567788876655544 34444444443
No 11
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=97.00 E-value=0.00098 Score=62.43 Aligned_cols=154 Identities=18% Similarity=0.168 Sum_probs=95.8
Q ss_pred CchhhhcccCceeeeeeccceec---ccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccCCCCCc
Q 018852 135 KDIVRKLLSGDLDLGIVGLDTVS---EFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPL 211 (349)
Q Consensus 135 ~DIP~yV~~G~aDlGIvG~DvL~---E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~~~~l 211 (349)
.++...+..|.+|++++|..... +.+. ++..+ ...+......+.++++ .+|++++||++ +
T Consensus 58 ~~~~~al~~G~~D~~~~~~~~~~~~~~~g~---~~~~v--~~~~~~~~~~lvv~~~---s~i~s~~DLkG---------k 120 (348)
T 3uif_A 58 PVINEGFASGKIDFGIYGDLPPIILNASKP---TVQLV--APWGTTSNSYLVVPKN---STAKSIKDLKG---------K 120 (348)
T ss_dssp HHHHHHHHTTCCCEEEEESHHHHHHHHHSC---CEEEE--EECCCCCCCEEEEETT---CCCCSGGGGTT---------S
T ss_pred HHHHHHHHcCCCCEEecCcHHHHHHHhCCC---CEEEE--EeccCCCceEEEEECC---CCCCCHHHcCC---------C
Confidence 44678899999999998876543 3332 22222 1223334456777777 67899999885 5
Q ss_pred EEEcCC----CccHHHHHHhcCCc--eEEEEecCCcccc--ccCCCcceeeeecccchhhHhhCCc-EEecC-ceE---E
Q 018852 212 RVATGF----TYLGPKFMKDNGLK--HVVFSTADGALEA--APAMGIADAILDLVSSGTTLRENNL-KEIEG-GVV---L 278 (349)
Q Consensus 212 RVATkY----Pnlar~yf~~~Gi~--~v~Ii~l~GSvEl--AP~lGlAD~IVDIVsTGtTLraNgL-k~ie~-g~I---l 278 (349)
|||+.. -.+.++++++.|++ .++++.+..+ |+ |-.-|-+|+++- -+...++.+.|. +++.+ +.+ .
T Consensus 121 ~I~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~~~~-~~~~al~~G~vDa~~~-~~~~~~~~~~g~~~~l~~~~~~~~~~ 198 (348)
T 3uif_A 121 KIALHRGRPWELAFSNLLQSEGLTFKDFKIVNVNPQ-VGAAALASGTVDGFFS-LFDSYILEDRGVGKIIWSTKTAPVDW 198 (348)
T ss_dssp EEEECTTSTHHHHHHHHHHHTTCCGGGSEEECCCHH-HHHHHHHHTSSSEEEE-STTHHHHHHTTSEEEEEEGGGSCGGG
T ss_pred EEEecCCChHHHHHHHHHHHcCCCHHHeEEEECCHH-HHHHHHHcCCCCEEEe-chHHHHHHhcCCcEEEEeccccCCCC
Confidence 887752 22347888888974 3677776433 43 344578898763 355567777876 55421 111 1
Q ss_pred EEEEEEEeecchhhhhcCchhHHHHHHHHHHH
Q 018852 279 ESQAVLVASRKSLIRRKGVLDATHEILERLEA 310 (349)
Q Consensus 279 eSsA~LIaN~~s~~~k~~~~~~i~~li~rl~~ 310 (349)
.....+++++..++.++ +.++.+++.+..
T Consensus 199 ~~~~~~~~~~~~~~~~p---~~~~~~~~a~~~ 227 (348)
T 3uif_A 199 KLMGGVWARNDFVKQNP---EITQAIVTAYLK 227 (348)
T ss_dssp SCCEEEEEEHHHHHHCH---HHHHHHHHHHHH
T ss_pred cceeEEEECHHHHHHCH---HHHHHHHHHHHH
Confidence 24567888888776655 456666655544
No 12
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=96.94 E-value=0.014 Score=48.81 Aligned_cols=143 Identities=16% Similarity=0.124 Sum_probs=91.5
Q ss_pred EEEeecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccCC
Q 018852 128 EVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTA 207 (349)
Q Consensus 128 ev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~ 207 (349)
++......++-..+..|.+|+++.+...-.|.... +.. .-.+.....++.++++. ..+.+++||.+
T Consensus 44 ~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~----~~~--~~p~~~~~~~~~~~~~~--~~i~~~~dL~g------ 109 (226)
T 1wdn_A 44 ELKPMDFSGIIPALQTKNVDLALAGITITDERKKA----IDF--SDGYYKSGLLVMVKANN--NDVKSVKDLDG------ 109 (226)
T ss_dssp EEEEECGGGHHHHHHTTSSSEEEEEEECCHHHHTT----SEE--CSCCEEEEEEEEEETTC--CSCSSSTTTTT------
T ss_pred EEEECCHHHHHHHHhCCCCCEEEEcCcCCHHHhCc----ccc--ccchhcCceEEEEeCCC--CCCCCHHHhCC------
Confidence 33444557888999999999999886654554321 111 23677788899999873 25778888764
Q ss_pred CCCcEEEcCCCccHHHHHHhcCCceEEEEecCCcccc--ccCCCcceeeeecccchhhH-hhC---CcEEecCceEEEEE
Q 018852 208 EKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEA--APAMGIADAILDLVSSGTTL-REN---NLKEIEGGVVLESQ 281 (349)
Q Consensus 208 ~~~lRVATkYPnlar~yf~~~Gi~~v~Ii~l~GSvEl--AP~lGlAD~IVDIVsTGtTL-raN---gLk~ie~g~IleSs 281 (349)
+|||+--......|+++..- .++++.....-++ +-.-|-+|+++.-..+...+ +++ .++++. ..+....
T Consensus 110 ---~~i~~~~g~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~ 184 (226)
T 1wdn_A 110 ---KVVAVKSGTGSVDYAKANIK-TKDLRQFPNIDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQFKAVG-DSLEAQQ 184 (226)
T ss_dssp ---CEEEEETTSHHHHHHHHHCC-CSEEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHTTTTTTEEEEE-EEEEEEE
T ss_pred ---CEEEEEcCCcHHHHHHHhCC-CceEEEeCCHHHHHHHHHcCCcCEEEeCcHHHHHHHHhCCCCceEEec-CCcccCc
Confidence 68998877778888888621 2355554544443 24568899988766666554 333 367664 1233345
Q ss_pred EEEEeecc
Q 018852 282 AVLVASRK 289 (349)
Q Consensus 282 A~LIaN~~ 289 (349)
-.+..++.
T Consensus 185 ~~~~~~k~ 192 (226)
T 1wdn_A 185 YGIAFPKG 192 (226)
T ss_dssp EEEEECTT
T ss_pred eEEEEeCC
Confidence 55666665
No 13
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=96.89 E-value=0.0012 Score=61.67 Aligned_cols=159 Identities=16% Similarity=0.116 Sum_probs=93.8
Q ss_pred CCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHh-hcCCccCCCCCcE
Q 018852 134 PKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLREL-AQMPQWTAEKPLR 212 (349)
Q Consensus 134 ~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL-~~~~~~~~~~~lR 212 (349)
..++-..+..|.+|++++|............++..+. ..+ .-...+.++++ .+|++++|| + ++|
T Consensus 92 ~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~--~~~-~~~~~ivv~~~---s~I~s~~DL~k---------Gk~ 156 (341)
T 3un6_A 92 WPDLMDALNSGRIDGASTLIELAMKSKQKGSNIKAVA--LGH-HEGNVIMGQKG---MHLNEFNNNGD---------DYH 156 (341)
T ss_dssp HHHHHHHHHTTSSSEEEEEHHHHHHHHHTTCCCEEEE--ESC-EECEEEEESTT---CCGGGCCSSSS---------CEE
T ss_pred HHHHHHHHHcCCCCEEecchHHHHHHHHCCCCeEEEe--ecC-CCceEEEEcCC---CCCCCHHHhCC---------CCE
Confidence 4678889999999999999987664211112322121 111 22345667776 678888887 5 379
Q ss_pred EEcCCCc-----cHHHHHHhcCCc--eEEEEecCCccccc--cCCCcceeeeecccchhhHhhCCc-EEe-cCceEEE--
Q 018852 213 VATGFTY-----LGPKFMKDNGLK--HVVFSTADGALEAA--PAMGIADAILDLVSSGTTLRENNL-KEI-EGGVVLE-- 279 (349)
Q Consensus 213 VATkYPn-----lar~yf~~~Gi~--~v~Ii~l~GSvElA--P~lGlAD~IVDIVsTGtTLraNgL-k~i-e~g~Ile-- 279 (349)
||+..+. +.+.++++.|++ .++++.+ +..++. -.-|-.|+++----..+.+...|. +++ +.+.+..
T Consensus 157 i~v~~~~s~~~~~~~~~l~~~Gl~~~dv~~~~~-~~~~~~~al~~G~vDa~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 235 (341)
T 3un6_A 157 FGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEM-SPAEMPAALSEHRITGYSVAEPFGALGEKLGKGKTLKHGDDVIPDA 235 (341)
T ss_dssp EEESCSSSHHHHHHHHHHHHTTCCTTSEEEEEC-CGGGHHHHHHTTSCSEEEEETTHHHHHHHSSCCEEEEEGGGTSTTC
T ss_pred EEECCCCCHHHHHHHHHHHHcCCCHHHeEEEEc-ChHHHHHHHHcCCCCEEEecCCHHHHHHhcCCeEEEEeccccCCCC
Confidence 9877643 345688888983 5888887 444433 234777877643333444444442 333 2122221
Q ss_pred EEEEEEeecchhhhhcCchhHHHHHHHHHHHH
Q 018852 280 SQAVLVASRKSLIRRKGVLDATHEILERLEAH 311 (349)
Q Consensus 280 SsA~LIaN~~s~~~k~~~~~~i~~li~rl~~v 311 (349)
....+++++...+.++ +.++.|++.+...
T Consensus 236 ~~~~~~~~~~~~~~~p---~~v~~~~~a~~~a 264 (341)
T 3un6_A 236 YCCVLVLRGELLDQHK---DVAQAFVQDYKKS 264 (341)
T ss_dssp CCEEEEECHHHHHHCH---HHHHHHHHHHHHH
T ss_pred ceEEEEECHHHHHHCH---HHHHHHHHHHHHH
Confidence 2367888877766555 4566666655543
No 14
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=96.83 E-value=0.0031 Score=54.30 Aligned_cols=143 Identities=14% Similarity=0.029 Sum_probs=90.5
Q ss_pred eEEEeecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccC
Q 018852 127 LEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWT 206 (349)
Q Consensus 127 vev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~ 206 (349)
+++......++-..+..|.+|+++.+...-.|... . +.. --.|..-.++++++.+ .++.+++||.+
T Consensus 83 v~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~~~~---~-~~~--~~p~~~~~~~~~~~~~---~~i~~~~dL~g----- 148 (259)
T 2v25_A 83 IKLVAVNAKTRGPLLDNGSVDAVIATFTITPERKR---I-YNF--SEPYYQDAIGLLVLKE---KKYKSLADMKG----- 148 (259)
T ss_dssp EEEEECCTTTHHHHHHTTSCSEECSSCBCCHHHHT---T-EEE--CSCSEEEEEEEEEEGG---GCCCSGGGCTT-----
T ss_pred eEEEEcCHHHHHHHHhCCCCCEEEecCccCHHHHh---c-Ccc--cccceeCceEEEEeCC---CCCCCHHHhCC-----
Confidence 55555566788999999999999987554444321 1 222 1267778889999987 56778888874
Q ss_pred CCCCcEEEcC----CCccHHHHHHhcCCceEEEEecCCccccc--cCCCcceeeeecccchhhHhhCCcEEecCceEEEE
Q 018852 207 AEKPLRVATG----FTYLGPKFMKDNGLKHVVFSTADGALEAA--PAMGIADAILDLVSSGTTLRENNLKEIEGGVVLES 280 (349)
Q Consensus 207 ~~~~lRVATk----YPnlar~yf~~~Gi~~v~Ii~l~GSvElA--P~lGlAD~IVDIVsTGtTLraNgLk~ie~g~IleS 280 (349)
++|++. |....++++.+.|++ ++++...+.-|+. -.-|-+|+++.-..+...+.+++-.++. ..+...
T Consensus 149 ----~~i~~~~g~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~-~~~~~~ 222 (259)
T 2v25_A 149 ----ANIGVAQAATTKKAIGEAAKKIGID-VKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDKSEILP-DSFEPQ 222 (259)
T ss_dssp ----CEEEEETTCSHHHHHHHHHHHTTCC-CEEEEESSHHHHHHHHHTTSSSEEEEEHHHHTTTCCTTEEECS-CCCSEE
T ss_pred ----CEEEEecCCchHHHHHHHHHhcCCc-eeEEEeCCHHHHHHHHHcCCCcEEEecHHHHHHHHHhCCCccc-cccccc
Confidence 466643 344556677777885 5777666554443 4468889888766555555444433333 233344
Q ss_pred EEEEEeecc
Q 018852 281 QAVLVASRK 289 (349)
Q Consensus 281 sA~LIaN~~ 289 (349)
.-.++.++.
T Consensus 223 ~~~~~~~k~ 231 (259)
T 2v25_A 223 SYGIVTKKD 231 (259)
T ss_dssp EECCEEETT
T ss_pred eeEEEEcCC
Confidence 455666654
No 15
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=96.75 E-value=0.0025 Score=58.80 Aligned_cols=158 Identities=16% Similarity=0.134 Sum_probs=91.4
Q ss_pred CCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccCCCCCcEE
Q 018852 134 PKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRV 213 (349)
Q Consensus 134 ~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~~~~lRV 213 (349)
..++...+..|.+|+|++|..-.........++..+ ....+..-...+.++++ .+|++++||++ +||
T Consensus 68 ~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v-~~~~~~~~~~~lvv~~~---s~I~s~~DLkG---------k~i 134 (324)
T 3ksx_A 68 GPQLLEALNVGSIDLGGAGDIPPLFAQAAGADLLYV-GWVPPTPKAETILVPSK---SALRTVADLKG---------KRI 134 (324)
T ss_dssp HHHHHHHHHTTSCSEEEEESHHHHHHHHTTCCEEEE-EEECCCGGGEEEEEETT---CSCCSGGGGTT---------CEE
T ss_pred HHHHHHHHHCCCCCEEeecCHHHHHHHhcCCCEEEE-EEecCCCCceEEEEeCC---CCCCCHHHhCC---------CEE
Confidence 457888999999999999865433211111222212 12222221245666776 67899999885 688
Q ss_pred EcCCCc-----cHHHHHHhcCCc--eEEEEecCCcccc--ccCCCcceeeeecccchhhH-hhCCcEEecC-ceEEEEEE
Q 018852 214 ATGFTY-----LGPKFMKDNGLK--HVVFSTADGALEA--APAMGIADAILDLVSSGTTL-RENNLKEIEG-GVVLESQA 282 (349)
Q Consensus 214 ATkYPn-----lar~yf~~~Gi~--~v~Ii~l~GSvEl--AP~lGlAD~IVDIVsTGtTL-raNgLk~ie~-g~IleSsA 282 (349)
|+. +. +.+++|++.|++ .++++.+ +.-|+ +-.-|-.|+++---.....+ ++.+.+++.+ ..+.....
T Consensus 135 ~v~-~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G~vDa~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~ 212 (324)
T 3ksx_A 135 AFQ-KGSSAHNLLLRVLAKSGLSMRDITPLYL-SPANARAAFAAGQVDAWAIWDPWYSALTLDGSARLLANGEGLGLTGG 212 (324)
T ss_dssp EEC-TTSHHHHHHHHHHHHTTCCGGGSEEEEC-CHHHHHHHHHTTCCSEEEEETTHHHHHHHTTSEEEEEESTTSCCCCE
T ss_pred Eec-CCChHHHHHHHHHHHcCCCHHHeEEEeC-CHHHHHHHHHcCCCCEEEEccHHHHHHHhcCCcEEEecccccCCCcc
Confidence 876 33 456788899973 4677776 33333 33447788865433333333 3456665531 12333456
Q ss_pred EEEeecchhhhhcCchhHHHHHHHHHH
Q 018852 283 VLVASRKSLIRRKGVLDATHEILERLE 309 (349)
Q Consensus 283 ~LIaN~~s~~~k~~~~~~i~~li~rl~ 309 (349)
.+++++...+.++ +.++.+++.+.
T Consensus 213 ~~~~~~~~~~~~p---~~~~~~~~a~~ 236 (324)
T 3ksx_A 213 FFLSSRRYATAWG---PFVQQVMGTLN 236 (324)
T ss_dssp EEEEEHHHHHHTH---HHHHHHHHHHH
T ss_pred EEEECHHHHHHCH---HHHHHHHHHHH
Confidence 7888887766554 34455554443
No 16
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=96.56 E-value=0.03 Score=49.65 Aligned_cols=143 Identities=17% Similarity=0.112 Sum_probs=93.7
Q ss_pred EEEeecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccCC
Q 018852 128 EVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTA 207 (349)
Q Consensus 128 ev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~ 207 (349)
++..+.-.++-..+..|.+|+.+.+...-.|... .+.. --+|.....++.++.+.. ..+.+++||.+
T Consensus 66 ~~~~~~~~~~~~~l~~G~~D~~~~~~~~t~~r~~----~~~f--s~p~~~~~~~l~~~~~~~-~~i~~~~dL~g------ 132 (271)
T 2iee_A 66 EFKEMGIDGMLTAVNSGQVDAAANDIDVTKDREE----KFAF--STPYKYSYGTAIVRKDDL-SGIKTLKDLKG------ 132 (271)
T ss_dssp EEEECCSTTHHHHHHHTSSSEECSSCBCCHHHHT----TEEE--CCCSEEEEEEEEECTTTG-GGCSSGGGGTT------
T ss_pred EEEECCHHHHHHHHHCCCcCEEEeCCcCChhhcc----ceEE--eecceeCCeEEEEECCCC-CCCCCHHHhCC------
Confidence 3344445788899999999999987655455432 1211 236777888999988731 25788888874
Q ss_pred CCCcEEEcCCCccHHHHHHhcCCceEEEEecCCcccc----ccCCCcceeeeecccchhhHh-h---CCcEEecCceEEE
Q 018852 208 EKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEA----APAMGIADAILDLVSSGTTLR-E---NNLKEIEGGVVLE 279 (349)
Q Consensus 208 ~~~lRVATkYPnlar~yf~~~Gi~~v~Ii~l~GSvEl----AP~lGlAD~IVDIVsTGtTLr-a---NgLk~ie~g~Ile 279 (349)
+|||+---.....+|++.|. +++.....-|+ +-.-|-+|+|+|-...-.-++ . .+++++.+..+..
T Consensus 133 ---~~i~v~~g~~~~~~l~~~~~---~~~~~~~~~~~~l~~~L~~GrvD~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (271)
T 2iee_A 133 ---KKAAGAATTVYMEVARKYGA---KEVIYDNATNEQYLKDVANGRTDVILNDYYLQTLALAAFPDLNITIHPDIKYMP 206 (271)
T ss_dssp ---CEEESCTTSHHHHHHHHTTC---EEEECSSCCHHHHHHHHHHTSSCEEEEEHHHHHHHHHHCTTSSCEECSSCCEEE
T ss_pred ---CEEEEeCCccHHHHHHHcCC---ceEEeCChhhHHHHHHHHcCCccEEeccHHHHHHHHHhCCCCceEEecCCCccc
Confidence 68998777777889988875 55555544443 245688997777655444555 3 3577762224555
Q ss_pred EEEEEEeecc
Q 018852 280 SQAVLVASRK 289 (349)
Q Consensus 280 SsA~LIaN~~ 289 (349)
....+..++.
T Consensus 207 ~~~~~~~~k~ 216 (271)
T 2iee_A 207 NKQALVMKKS 216 (271)
T ss_dssp EEECCEEETT
T ss_pred ceEEEEEcCC
Confidence 5666777765
No 17
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=96.52 E-value=0.01 Score=54.92 Aligned_cols=153 Identities=16% Similarity=0.210 Sum_probs=86.8
Q ss_pred chhhhcccCceeeeeeccceecc-cCCCCccceeecCCCCcccEEEEEEEeCCCccC-cccchHHhhcCCccCCCCCcEE
Q 018852 136 DIVRKLLSGDLDLGIVGLDTVSE-FGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFE-NINSLRELAQMPQWTAEKPLRV 213 (349)
Q Consensus 136 DIP~yV~~G~aDlGIvG~DvL~E-~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~-dv~sl~dL~~~~~~~~~~~lRV 213 (349)
++...|..|.+|+|+++.+.+.. ......++. .+..+.-+.....+.++.+ . +|++++|| +||
T Consensus 57 ~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~-~v~~~~~~~~~~~i~v~~d---s~~i~s~~DL-----------K~i 121 (321)
T 2x7q_A 57 RLINLLNSNEVDIAIGLTEAFIADIAKGNENIH-VLDTYVKSPLLWAVSTGSN---RDDVTDAKQL-----------KRI 121 (321)
T ss_dssp HHHHHHHTTSCSEEEEEHHHHHHHHHTTCTTEE-EEEEEECSCCEEEEEEESS---CTTCSSGGGC-----------CEE
T ss_pred HHHHHHHcCCccEEecCcHHHHHHHHCCCCcEE-EEEEecCCCcceEEEECCC---CCCCCChHHc-----------ceE
Confidence 36889999999999999874443 211111122 1111222222345677776 4 78888886 278
Q ss_pred EcCCCcc----HHHHH-HhcCCc-eEEEEecCCccccc--cCCC----cceeeeecccchhh--HhhCC-cEEecCceEE
Q 018852 214 ATGFTYL----GPKFM-KDNGLK-HVVFSTADGALEAA--PAMG----IADAILDLVSSGTT--LRENN-LKEIEGGVVL 278 (349)
Q Consensus 214 ATkYPnl----ar~yf-~~~Gi~-~v~Ii~l~GSvElA--P~lG----lAD~IVDIVsTGtT--LraNg-Lk~ie~g~Il 278 (349)
|+.-+.. ..+++ ++.|++ .++++.+.+.-++. -.-| -.|+++ .+--.+ +.++| ++++. ...
T Consensus 122 ~~~~~gs~~~~~~~~l~~~~Gl~~dv~~v~~~~~~~~~~al~~G~~~~~vDa~~--~ep~~~~~~~~~g~~~~~~--d~~ 197 (321)
T 2x7q_A 122 GVSRIGSGSYVMSFVLAHQLGVPSFDQFQVLSNFKNLRDSVNLKDGVEGSDAFM--WEYFTSKKYYDNHEIKQID--QIY 197 (321)
T ss_dssp EESSTTSHHHHHHHHHHHHHTSCCCCEEEECCSHHHHHHHHTTCTTSCCCSEEE--EEHHHHHHHHHTTSEEEEE--EEE
T ss_pred EeeCCCcHHHHHHHHHHHhcCCCcceEEEEcCChHHHHHHHHcCCCccceEEEE--ecCccchhhccCCceEEcc--ccC
Confidence 8765333 33344 567885 26888876654433 3457 788864 332222 22355 66554 232
Q ss_pred E--EEEEEEeecchhhhhcCchhHHHHHHHHHHH
Q 018852 279 E--SQAVLVASRKSLIRRKGVLDATHEILERLEA 310 (349)
Q Consensus 279 e--SsA~LIaN~~s~~~k~~~~~~i~~li~rl~~ 310 (349)
. ....+++++...+.++ +.+..|++.+..
T Consensus 198 ~~~~~~~l~~~~~~~~~~p---~~v~~~~~a~~~ 228 (321)
T 2x7q_A 198 TPWSSWVVATSSDSLQAKS---DVIKNFIDAVNQ 228 (321)
T ss_dssp CSSCSEEEEEEHHHHHHSH---HHHHHHHHHHHH
T ss_pred CCCceEEEEEcHHHHhhCH---HHHHHHHHHHHH
Confidence 2 2358888888776555 455555554443
No 18
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=96.51 E-value=0.0092 Score=50.09 Aligned_cols=158 Identities=15% Similarity=0.146 Sum_probs=93.8
Q ss_pred eEEEee-cCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCc-cCcccchHHhhcCCc
Q 018852 127 LEVWFQ-RPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGI-FENINSLRELAQMPQ 204 (349)
Q Consensus 127 vev~~v-R~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~-~~dv~sl~dL~~~~~ 204 (349)
+++... ...++-..+..|.+|+++.+...-.|... . +.. .-+|.....++.++.+.. ..++.+++||.+
T Consensus 42 ~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~---~-~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~dL~g--- 112 (228)
T 2pyy_A 42 SKLIEYSSVPELISAIKDNKVNLGIAAISITAEREQ---N-FDF--SLPIFASGLQIMVRNLESGTGDIRSIDDLPG--- 112 (228)
T ss_dssp EEEEECSSHHHHHHHHHTTSCSEECSSCBCCHHHHH---H-SEE--CSCSEEEEEEEEEEC-----CCCCSGGGCTT---
T ss_pred EEEEEcCCHHHHHHHHHCCCcCEEEeccccCHHHHc---c-cee--cccchhcceEEEEECCccccCCcCCHHHcCC---
Confidence 344444 23667889999999999987655444431 1 111 236777788888887631 126778888764
Q ss_pred cCCCCCcEEEcCCCccHHHHHHhcCCceEEEEecCCcccc--ccCCCcceeeeecccchhhH-hhC---CcEEecCceEE
Q 018852 205 WTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEA--APAMGIADAILDLVSSGTTL-REN---NLKEIEGGVVL 278 (349)
Q Consensus 205 ~~~~~~lRVATkYPnlar~yf~~~Gi~~v~Ii~l~GSvEl--AP~lGlAD~IVDIVsTGtTL-raN---gLk~ie~g~Il 278 (349)
+|||+--......||++.|++ ++......++ +-.-|-+|+++.-..+...+ +.+ .++++. ..+
T Consensus 113 ------~~i~~~~g~~~~~~l~~~~~~---~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 181 (228)
T 2pyy_A 113 ------KVVATTAGSTAATYLREHHIS---VLEVPKIEEAYKALQTKKADAVVFDAPVLLFYAANEGKGKVEIVG--SIL 181 (228)
T ss_dssp ------CEEEEETTSHHHHHHHHTTCE---EEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTTTTTEEEEE--EEE
T ss_pred ------CeEEEEcCcHHHHHHHHcCCc---eEecCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCCcEEEec--ccc
Confidence 688887777788999998863 3333333332 24568889888766666554 333 356554 333
Q ss_pred E-EEEEEEeecchhhhhcCchhHHHHHHHHHH
Q 018852 279 E-SQAVLVASRKSLIRRKGVLDATHEILERLE 309 (349)
Q Consensus 279 e-SsA~LIaN~~s~~~k~~~~~~i~~li~rl~ 309 (349)
. ..-.+..++.. +..+.+++.+..++
T Consensus 182 ~~~~~~~~~~~~~-----~l~~~~~~~l~~l~ 208 (228)
T 2pyy_A 182 REESYGIILPNNS-----PYRKPINQALLNLK 208 (228)
T ss_dssp EEEEECCEECTTC-----TTHHHHHHHHHHHH
T ss_pred cceeEEEEEeCCh-----HHHHHHHHHHHHHH
Confidence 3 34444555432 12345556655554
No 19
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=96.47 E-value=0.018 Score=48.65 Aligned_cols=160 Identities=17% Similarity=0.045 Sum_probs=99.3
Q ss_pred eEEEee-cCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCcc
Q 018852 127 LEVWFQ-RPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQW 205 (349)
Q Consensus 127 vev~~v-R~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~ 205 (349)
+++... ...++-..+..|.+|+++.+...-.|.... +.+.. .-.|.....++.++.+.. .++.+++||.+
T Consensus 46 ~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~--~~~~~--s~p~~~~~~~~~~~~~~~-~~i~~~~dL~g---- 116 (233)
T 1ii5_A 46 SEYVRQNSISAGITAVAEGELDILIGPISVTPERAAI--EGITF--TQPYFSSGIGLLIPGTAT-PLFRSVGDLKN---- 116 (233)
T ss_dssp EEEEECSCHHHHHHHHHTTSCSEEEEEEECCHHHHTS--TTEEE--CCCCEEEEEEEEEEGGGT-TTCSSGGGGTT----
T ss_pred EEEEEeCCHHHHHHHHHCCCcCEEEeeeecCcccccc--ceeEE--ccceeecCeEEEEECCCC-CCCCCHHHhCC----
Confidence 444444 457788899999999999876655554200 11211 245677788888888631 27788888874
Q ss_pred CCCCCcEEEcCCCccHHHHHHhcCCceEEEEecCCcccc--ccCCCcceeeeecccchhhH-hhC---CcEEecCceEEE
Q 018852 206 TAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEA--APAMGIADAILDLVSSGTTL-REN---NLKEIEGGVVLE 279 (349)
Q Consensus 206 ~~~~~lRVATkYPnlar~yf~~~Gi~~v~Ii~l~GSvEl--AP~lGlAD~IVDIVsTGtTL-raN---gLk~ie~g~Ile 279 (349)
+|||+--......+|++.++ +++......++ +-.-|-+|+++.-..+...+ +.+ +++++. ..+..
T Consensus 117 -----~~v~~~~g~~~~~~l~~~~~---~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 187 (233)
T 1ii5_A 117 -----KEVAVVRDTTAVDWANFYQA---DVRETNNLTAAITLLQKKQVEAVMFDRPALIYYTRQNPNLNLEVTE-IRVSL 187 (233)
T ss_dssp -----CEEEEETTSHHHHHHHHTTC---EEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCGGGCEEECS-CCSEE
T ss_pred -----CeEEEECCccHHHHHHHcCC---CeEEcCCHHHHHHHHHcCCccEEEeCHHHHHHHHHhCCCCcEEEeC-ccccc
Confidence 68998877788889988865 44443433332 24568899888766665544 333 466664 23444
Q ss_pred EEEEEEeecchhhhhcCchhHHHHHHHHHH
Q 018852 280 SQAVLVASRKSLIRRKGVLDATHEILERLE 309 (349)
Q Consensus 280 SsA~LIaN~~s~~~k~~~~~~i~~li~rl~ 309 (349)
..-.+..++... ..+.+++.+..++
T Consensus 188 ~~~~~~~~k~~~-----l~~~~~~~l~~l~ 212 (233)
T 1ii5_A 188 EPYGFVLKENSP-----LQKTINVEMLNLL 212 (233)
T ss_dssp EEEEEEEETTCT-----THHHHHHHHHHHH
T ss_pred cceEEEEcCCch-----HHHHHHHHHHHHH
Confidence 455566666531 2345666666654
No 20
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=96.41 E-value=0.011 Score=55.34 Aligned_cols=161 Identities=13% Similarity=0.115 Sum_probs=94.2
Q ss_pred cCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccCCCCCcE
Q 018852 133 RPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLR 212 (349)
Q Consensus 133 R~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~~~~lR 212 (349)
-+.|+...|..|.+|+|+.|.+.+.-......++..+. .+.-..+...+..+.+ ..+++++||.+ ++
T Consensus 47 ~~~~~~~al~sG~~D~g~~~~~~~~~a~~~G~~v~~v~-~~~~~~~~~~~~~~~~---~~~~~~~dLkG---------K~ 113 (342)
T 4esw_A 47 NPSDVTELVGSGKVDMGLKAMVGTLAAKARGFPVTSIG-SLLDEPFTGICYLEGS---GITSDFQSLKG---------KR 113 (342)
T ss_dssp SGGGHHHHHHHTSSSEEEEEHHHHHHHHHTTCCEEEEE-EEECSCCEEEEEETTS---SCCSSGGGGTT---------CE
T ss_pred ChHHHHHHHHcCCcCEEEecHHHHHHHHHCCCCeEEEE-EeccCCcccccccccc---cccCCHHHhCC---------CE
Confidence 34788999999999999999886665432222332221 1212223334444444 44567888875 68
Q ss_pred EEcCCC---ccHHHHHHhcCCc--eEEEEecCCccccccCCCcceeeeecccchhh-----HhhCCcEEecCceEEE---
Q 018852 213 VATGFT---YLGPKFMKDNGLK--HVVFSTADGALEAAPAMGIADAILDLVSSGTT-----LRENNLKEIEGGVVLE--- 279 (349)
Q Consensus 213 VATkYP---nlar~yf~~~Gi~--~v~Ii~l~GSvElAP~lGlAD~IVDIVsTGtT-----LraNgLk~ie~g~Ile--- 279 (349)
|++... .+.+.++++.|++ .++++.+......|-.-|-.|+++-.--..+. ++..|....+ +..+.
T Consensus 114 ig~~~~~~~~~l~~~L~~~Gl~~~dv~~v~~~~~~~~al~~G~vDa~~~~~p~~~~~~~~~~~~~g~~~~~-~~~~~~~~ 192 (342)
T 4esw_A 114 IGYVGEFGKIQVDELTKHYGMTPDDYVAVRCGMNVAKYILEGTIDCGIGIECIQQVELEEALKEQGKDSND-AKMLRIDK 192 (342)
T ss_dssp EEESSSHHHHHHHHHHGGGTCCGGGSEEEECGGGHHHHHHHTSSSEEEEETTTHHHHHHHHHHHTTCCGGG-EEEEEHHH
T ss_pred EEecCCchHHHHHHHHHHcCCChhheEEecCCHHHHHHHHcCCCCEEEEeccchHHHHHHHHHhhCccccc-cceeeecc
Confidence 887542 2567788888984 46777765444434445778887754443332 3334433322 11111
Q ss_pred ---------EEEEEEeecchhhhhcCchhHHHHHHHHHHH
Q 018852 280 ---------SQAVLVASRKSLIRRKGVLDATHEILERLEA 310 (349)
Q Consensus 280 ---------SsA~LIaN~~s~~~k~~~~~~i~~li~rl~~ 310 (349)
.+.++|+|+...+.++ +.++.+++.+..
T Consensus 193 ~~d~g~~~~~~~v~v~~~~~l~~~P---e~v~~fl~A~~k 229 (342)
T 4esw_A 193 LAELGCCCFCTILYIANDKFIAENP---QAVKKFLKAIKR 229 (342)
T ss_dssp HHTCSSCGGGCEEEEEEHHHHHHCH---HHHHHHHHHHHH
T ss_pred hhhcCCCCccceEEEECHHHHhhCH---HHHHHHHHHHHH
Confidence 3467889998887766 466677555543
No 21
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=96.20 E-value=0.039 Score=46.52 Aligned_cols=143 Identities=15% Similarity=0.139 Sum_probs=90.6
Q ss_pred eEEEeecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccC
Q 018852 127 LEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWT 206 (349)
Q Consensus 127 vev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~ 206 (349)
+++....-.++-..+..|.+|+ +.|..+-.|.... +.. --.+.....++.++++. ..+.+++||.+
T Consensus 52 ~~~~~~~~~~~~~~l~~g~~D~-~~~~~~~~~r~~~----~~~--s~p~~~~~~~~~~~~~~--~~~~~~~dL~g----- 117 (234)
T 3h7m_A 52 VEFRLGAWSEMFSALKSGRVDV-LQGISWSEKRARQ----IDF--TPPHTIVYHAIFARRDS--PPAAGLEDLRG----- 117 (234)
T ss_dssp EEEEEECGGGHHHHHHTTSSSE-EEEEECCHHHHTT----EEE--EEEEEEEEEEEEEESSS--CCCSSGGGGTT-----
T ss_pred eEEEeCCHHHHHHHHhCCCeeE-EEeccCCHhHHhh----cCC--CccccccceEEEEECCC--CCCCCHHHhCC-----
Confidence 3444445577888999999999 5665554444321 111 12456677888898873 24888898874
Q ss_pred CCCCcEEEcCCCccHHHHHHhcCCceEEEEecCCcccc--ccCCCcceeeeecccchhhH-hhC---CcEEecCceEEEE
Q 018852 207 AEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEA--APAMGIADAILDLVSSGTTL-REN---NLKEIEGGVVLES 280 (349)
Q Consensus 207 ~~~~lRVATkYPnlar~yf~~~Gi~~v~Ii~l~GSvEl--AP~lGlAD~IVDIVsTGtTL-raN---gLk~ie~g~IleS 280 (349)
+|||+--......|+++.+.. ++++.....-++ +-.-|-+|+++.-..++..+ +.+ +++++. ..+...
T Consensus 118 ----~~i~~~~g~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 191 (234)
T 3h7m_A 118 ----RKVALHRDGIMHEYLAERGYG-KDLVLTPTPADALRLLAAGGCDYAVVAMVPGMYIIRENRLTNLVPVA-RSIAAQ 191 (234)
T ss_dssp ----SCEEEETTSHHHHHHHTTTCG-GGEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHTTCTTEEEEE-EEEEEE
T ss_pred ----CEEEEEeCchHHHHHHhcCCC-ceEEEeCCHHHHHHHHHcCCceEEEeccHHHHHHHHhcCCCceEEec-cccCCC
Confidence 688888888889999998754 466665544443 35678899877655555443 443 356554 133344
Q ss_pred EEEEEeecc
Q 018852 281 QAVLVASRK 289 (349)
Q Consensus 281 sA~LIaN~~ 289 (349)
.-.+..++.
T Consensus 192 ~~~~~~~~~ 200 (234)
T 3h7m_A 192 RYGYAVRQG 200 (234)
T ss_dssp EEEEEEETT
T ss_pred ceEEEEeCC
Confidence 445555554
No 22
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=96.18 E-value=0.022 Score=48.83 Aligned_cols=121 Identities=12% Similarity=0.011 Sum_probs=82.6
Q ss_pred EEEeecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccCC
Q 018852 128 EVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTA 207 (349)
Q Consensus 128 ev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~ 207 (349)
++..+...+.-..+..|.+|+++.|.-.-.|.... +.. --.|.....++.++++ .++.+++||.+
T Consensus 46 ~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~----~~f--s~p~~~~~~~~~~~~~---~~~~~~~dL~g------ 110 (237)
T 3kzg_A 46 TFEAYIFDDLFPALKNREVDLVIASMIITDERKKH----FIF--SLPYMESNSQYITTVD---SKISTFDDLHG------ 110 (237)
T ss_dssp EEEEECGGGHHHHHHTTSSSEECSSCBCCTTGGGT----CEE--CCCSBCCEEEEEEETT---CSCCSGGGGTT------
T ss_pred EEEEcCHHHHHHHHhCCCCCEEEEccccChhHhcc----cee--eeeeeecceEEEEECC---CCCCCHHHhCC------
Confidence 34444557888899999999999876665554321 211 2367778889999987 45888898874
Q ss_pred CCCcEEEcCCCccHHHHHHhcCCceEEEEecCCccccc--cCCCcceeeeecccchhhHhhC
Q 018852 208 EKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAA--PAMGIADAILDLVSSGTTLREN 267 (349)
Q Consensus 208 ~~~lRVATkYPnlar~yf~~~Gi~~v~Ii~l~GSvElA--P~lGlAD~IVDIVsTGtTLraN 267 (349)
+|||+-.-.....++.+..- .++++.....-|+. -.-|-+|+++.-..+...+.++
T Consensus 111 ---~~i~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~ 168 (237)
T 3kzg_A 111 ---KKIGVRKGTPYARQVLSENR-NNQVIFYELIQDMLLGLSNNQVDASLMDYEAAKYWMAS 168 (237)
T ss_dssp ---CEEEEETTSTHHHHHHHTCS-SCEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHTT
T ss_pred ---CEEEEecCCHHHHHHHHhCC-CCcEEEeCCHHHHHHHHHcCCCCEEEeCcHHHHHHHHh
Confidence 68998877776777776543 25677666555543 4568899888776666655443
No 23
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=96.13 E-value=0.11 Score=45.01 Aligned_cols=158 Identities=15% Similarity=0.108 Sum_probs=100.4
Q ss_pred EEEeecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccCC
Q 018852 128 EVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTA 207 (349)
Q Consensus 128 ev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~ 207 (349)
++..+...++-..+..|.+|+++.+...-.|.... +.. --.|.....++.++.+. ..+.+++||.+
T Consensus 65 ~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~----~~~--s~p~~~~~~~~~~~~~~--~~i~~~~dL~g------ 130 (249)
T 4f3p_A 65 KIQPMDFAGLIPALQTQNIDVALSGMTIKEERRKA----IDF--SDPYYDSGLAAMVQANN--TTIKSIDDLNG------ 130 (249)
T ss_dssp EEEEECGGGHHHHHHTTSCSEEEEEEECCHHHHTT----EEE--CSCCEEEEEEEEEETTC--CSCCSSGGGTT------
T ss_pred EEEecCHHHHHHHHHCCCCCEEEeccccCHHHHcC----cce--ecceeeccEEEEEECCC--CCcCChHHhCC------
Confidence 33444457788899999999998876655554321 211 23677788888888873 35788888874
Q ss_pred CCCcEEEcCCCccHHHHHHhcCCceEEEEecCCcccc--ccCCCcceeeeecccchhhHhh----CCcEEecCceEEEEE
Q 018852 208 EKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEA--APAMGIADAILDLVSSGTTLRE----NNLKEIEGGVVLESQ 281 (349)
Q Consensus 208 ~~~lRVATkYPnlar~yf~~~Gi~~v~Ii~l~GSvEl--AP~lGlAD~IVDIVsTGtTLra----NgLk~ie~g~IleSs 281 (349)
+|||+--......|+.+..- .++++.....-++ +-.-|-+|+++.-..+...+.+ .+++++. ..+....
T Consensus 131 ---~~i~v~~g~~~~~~l~~~~~-~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~ 205 (249)
T 4f3p_A 131 ---KVIAAKTGTATIDWIKAHLK-PKEIRQFPNIDQAYLALEAGRVDAAMHDTPNVLFFVNNEGKGRVKVAG-APVSGDK 205 (249)
T ss_dssp ---SEEEEETTSHHHHHHHHHCC-CSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTTTTTEEEEE-EEEEEEE
T ss_pred ---CEEEEeCCChHHHHHHhcCC-CceEEEcCCHHHHHHHHHcCCeeEEEeCcHHHHHHHHhCCCCceEEec-CCCCCcc
Confidence 68998887788889988642 2466665544333 2457889988877666655543 2367664 2344445
Q ss_pred EEEEeecchhhhhcCchhHHHHHHHHHH
Q 018852 282 AVLVASRKSLIRRKGVLDATHEILERLE 309 (349)
Q Consensus 282 A~LIaN~~s~~~k~~~~~~i~~li~rl~ 309 (349)
..+..++..- ..+.+++.+..++
T Consensus 206 ~~~~~~k~~~-----l~~~l~~~l~~l~ 228 (249)
T 4f3p_A 206 YGIGFPKGSP-----LVAKVNAELARMK 228 (249)
T ss_dssp EEEEEETTCT-----HHHHHHHHHHHHH
T ss_pred EEEEEcCCch-----HHHHHHHHHHHHH
Confidence 5566665542 1245555555554
No 24
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=95.99 E-value=0.073 Score=47.54 Aligned_cols=142 Identities=14% Similarity=0.097 Sum_probs=90.1
Q ss_pred eEEEeecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccC
Q 018852 127 LEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWT 206 (349)
Q Consensus 127 vev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~ 206 (349)
+++......+.-..+..|.+|+++.+...-.|.... +.. .-+|..-..++.++.+ .++++++||.+
T Consensus 88 ~~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~~r~~~----~~~--s~p~~~~~~~~~~~~~---~~i~~~~dL~g----- 153 (292)
T 1xt8_A 88 VQFVLVEAANRVEFLKSNKVDIILANFTQTPQRAEQ----VDF--CSPYMKVALGVAVPKD---SNITSVEDLKD----- 153 (292)
T ss_dssp EEEEECCGGGHHHHHHTTSCSEECSSCBCCHHHHTT----EEE--CCCCEEEEEEEEEETT---CCCCSSGGGTT-----
T ss_pred EEEEEcCHHHHHHHHhCCCeeEEeecCCCCcchhcc----eee--eccceecceEEEEECC---CCCCCHHHhCC-----
Confidence 444444456788899999999998876655554321 211 2356677888889887 47788888874
Q ss_pred CCCCcEEEcCCCccHHHHHHhcCCceEEEEecCCccccc--cCCCcceeeeecccchhhHh-hC-CcEEecCceEEEEEE
Q 018852 207 AEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAA--PAMGIADAILDLVSSGTTLR-EN-NLKEIEGGVVLESQA 282 (349)
Q Consensus 207 ~~~~lRVATkYPnlar~yf~~~Gi~~v~Ii~l~GSvElA--P~lGlAD~IVDIVsTGtTLr-aN-gLk~ie~g~IleSsA 282 (349)
+|||+--......++++.+- .++++.....-|+. -.-|-+|+++.-..+...+. .+ +++++. ..+....
T Consensus 154 ----~~i~~~~g~~~~~~l~~~~~-~~~~~~~~~~~~~~~~L~~G~vDa~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~ 226 (292)
T 1xt8_A 154 ----KTLLLNKGTTADAYFTQNYP-NIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFKMGI--KELGNKD 226 (292)
T ss_dssp ----SEEEEETTSHHHHHHHHHCT-TSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTEEEEE--EEEEEEE
T ss_pred ----CEEEEeCCCcHHHHHHHhCC-CceEEEcCCHHHHHHHHHcCCccEEEecHHHHHHHHHhCCCeEEcc--cccccCc
Confidence 68888766677778887642 24666655544432 44688998877655555443 33 377765 3333333
Q ss_pred --EEEeecc
Q 018852 283 --VLVASRK 289 (349)
Q Consensus 283 --~LIaN~~ 289 (349)
.+..++.
T Consensus 227 ~~~~~~~k~ 235 (292)
T 1xt8_A 227 VIAPAVKKG 235 (292)
T ss_dssp EECCEEETT
T ss_pred eeEEEEeCC
Confidence 4555554
No 25
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=95.95 E-value=0.014 Score=51.68 Aligned_cols=157 Identities=15% Similarity=0.128 Sum_probs=93.4
Q ss_pred eEEEeecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccC
Q 018852 127 LEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWT 206 (349)
Q Consensus 127 vev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~ 206 (349)
+++......++-..+..|.+|+++.|...-.|.... +.. --.|..-..++.++++ .++.+++||.+
T Consensus 82 v~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~~r~~~----~~~--s~p~~~~~~~l~~~~~---~~i~~~~dL~g----- 147 (272)
T 2pvu_A 82 YELKNIGWDPLFASLQSKEVDMGISGITITDERKQS----YDF--SDPYFEATQVILVKQG---SPVKNALDLKG----- 147 (272)
T ss_dssp EEEEECCHHHHHHHHHHTSSSEECSSCBCCHHHHTT----EEE--CSCCEEECEEEEEETT---CCCCSGGGGTT-----
T ss_pred eEEEECCHHHHHHHHhCCCCCEEEeCCcCCHHHHhc----Ccc--chhhhccceEEEEECC---CCCCCHHHhCC-----
Confidence 334444456788899999999999875544443311 211 1345666778888887 45788888874
Q ss_pred CCCCcEEEcCCCccHHHHHHhc-CCceEEEEecCCcccc--ccCCCcceeeeecccchhhH-hhCC---cEEecCceE--
Q 018852 207 AEKPLRVATGFTYLGPKFMKDN-GLKHVVFSTADGALEA--APAMGIADAILDLVSSGTTL-RENN---LKEIEGGVV-- 277 (349)
Q Consensus 207 ~~~~lRVATkYPnlar~yf~~~-Gi~~v~Ii~l~GSvEl--AP~lGlAD~IVDIVsTGtTL-raNg---Lk~ie~g~I-- 277 (349)
+|||+--......|+++. | ...+++.....-|+ +-.-|-+|+++.-..+...+ ++++ |+++. ..
T Consensus 148 ----~~i~~~~g~~~~~~l~~~~~-~~~~i~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~l~~~~--~~~~ 220 (272)
T 2pvu_A 148 ----KTIGVQNATTGQEAAEKLFG-KGPHIKKFETTVVAIMELLNGGVDAVITDNAVANEYVKNNPNKKLQVIE--DPKN 220 (272)
T ss_dssp ----SCEEEETTSHHHHHHHHHHC-SSTTEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCGGGCEEEEC--CTTT
T ss_pred ----CeEEEEcCchHHHHHHHhcC-CCCeEEEcCCHHHHHHHHHcCCccEEEeCHHHHHHHHHhCCCCceEEec--cccc
Confidence 578876666667777765 4 11233433433332 24568899988766666554 3332 66665 22
Q ss_pred -EEEEEEEEeecchhhhhcCchhHHHHHHHHHH
Q 018852 278 -LESQAVLVASRKSLIRRKGVLDATHEILERLE 309 (349)
Q Consensus 278 -leSsA~LIaN~~s~~~k~~~~~~i~~li~rl~ 309 (349)
....-.+++++. . +..+.+++.+..+.
T Consensus 221 ~~~~~~~~~~~k~-~----~l~~~l~~~l~~l~ 248 (272)
T 2pvu_A 221 FASEYYGMIFPKN-S----ELKAKVDEALKNVI 248 (272)
T ss_dssp SCCEEECCEEETT-C----TTHHHHHHHHHHHH
T ss_pred cCCceEEEEEeCC-H----HHHHHHHHHHHHHH
Confidence 334556666665 1 12345555555554
No 26
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=95.93 E-value=0.022 Score=51.40 Aligned_cols=128 Identities=17% Similarity=0.137 Sum_probs=84.8
Q ss_pred eEEEeecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccC
Q 018852 127 LEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWT 206 (349)
Q Consensus 127 vev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~ 206 (349)
+++......++-..+..|.+|+++.+..+-.|.... +.. --.|..-..++.++++ .++++++||++
T Consensus 99 v~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~~r~~~----~~~--~~p~~~~~~~l~~~~~---~~i~sl~dL~g----- 164 (291)
T 2yjp_A 99 VEFVLTEAANRVEYVRSGKVDLILANFTQTPERAEA----VDF--ADPYMKVALGVVSPKN---KPITDMAQLKD----- 164 (291)
T ss_dssp EEEEECCGGGHHHHHHTTSCSEECSSCBCCHHHHTT----EEE--CCCCEEECEEEEEETT---SCCCSGGGGTT-----
T ss_pred EEEEEccHHHHHHHHhCCCeeEEEeCCCCChHHHcc----cee--ccCeeecceEEEEeCC---CCCCCHHHhCC-----
Confidence 455555567888999999999999887665554321 211 2345666778889987 47889999874
Q ss_pred CCCCcEEEcCCCccHHHHHHhcCCceEEEEecCCccccc--cCCCcceeeeecccchhhHhh-C-CcEEec
Q 018852 207 AEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAA--PAMGIADAILDLVSSGTTLRE-N-NLKEIE 273 (349)
Q Consensus 207 ~~~~lRVATkYPnlar~yf~~~Gi~~v~Ii~l~GSvElA--P~lGlAD~IVDIVsTGtTLra-N-gLk~ie 273 (349)
+|||+---.....++.+..- .++++......|+. -.-|-+|+++.-......+.. + +++++.
T Consensus 165 ----k~v~~~~g~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~ 230 (291)
T 2yjp_A 165 ----QTLLVNKGTTADAFFTKSHP-EVKLLKFDQNTETFDALKDGRGVALAHDNALLWAWAKENPNFEVAI 230 (291)
T ss_dssp ----SEEEEETTSHHHHHHHHHCT-TSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTEEEEE
T ss_pred ----CEEEEecCCcHHHHHHHhCC-CceEEEeCCHHHHHHHHHcCCccEEEecHHHHHHHHHhCCCeEEcC
Confidence 68998776777788887642 24666655544432 446888987765555554433 3 366654
No 27
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=95.81 E-value=0.012 Score=52.94 Aligned_cols=125 Identities=18% Similarity=0.125 Sum_probs=82.8
Q ss_pred eEEEeecCCchhhhcccCceeeeeeccce-ecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCcc
Q 018852 127 LEVWFQRPKDIVRKLLSGDLDLGIVGLDT-VSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQW 205 (349)
Q Consensus 127 vev~~vR~~DIP~yV~~G~aDlGIvG~Dv-L~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~ 205 (349)
+++......++-..+..|.+|+++.+... -.|.. ..+.. -..|....+++.++++ .++++++||.+
T Consensus 98 v~~~~~~~~~~~~~l~~G~~D~~~~~~~~~t~~r~----~~~~~--~~p~~~~~~~l~~~~~---~~i~s~~dL~G---- 164 (283)
T 2yln_A 98 VEFKETQWDSMMAGLKAGRFDVVANQVGLTSPERQ----ATFDK--SEPYSWSGAVLVAHND---SNIKSIADIKG---- 164 (283)
T ss_dssp EEEEECCGGGHHHHHHHTSCSEECSSCCCCSHHHH----HHEEE--CSCSEEECEEEEEETT---CSCCSGGGCTT----
T ss_pred eEEEECCHHHHHHHHHCCCcCEEEecCccCChhhh----cceEe--ccCeeeecEEEEEECC---CCCCCHHHhCC----
Confidence 34444445678889999999999988655 34432 11211 2356777888999987 56888898864
Q ss_pred CCCCCcEEEcCCCccHHHHHHhcCCceEEEEecCCcccc--ccCCCcceeeeecccchhh-HhhCC---cEEe
Q 018852 206 TAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEA--APAMGIADAILDLVSSGTT-LRENN---LKEI 272 (349)
Q Consensus 206 ~~~~~lRVATkYPnlar~yf~~~Gi~~v~Ii~l~GSvEl--AP~lGlAD~IVDIVsTGtT-LraNg---Lk~i 272 (349)
+|||+---.....+|++.|+ +++......|+ +-.-|-+|+++.-...... ++.++ ++++
T Consensus 165 -----~~v~v~~g~~~~~~l~~~~~---~~~~~~~~~~~~~~l~~g~vDa~i~~~~~~~~~~~~~~~~~l~~~ 229 (283)
T 2yln_A 165 -----VKTAQSLTSNYGEKAKAAGA---QLVPVDGLAQSLTLIEQKRADATLNDELAVLDYLKKNPNAGVKIV 229 (283)
T ss_dssp -----SEEEECTTSHHHHHHHHTTC---EEEECSSHHHHHHHHHTTSCCEEEEEHHHHHHHHHHSTTSSEEEE
T ss_pred -----CEEEEecCchHHHHHHHcCC---eEEEeCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCCcEEEc
Confidence 68998776777888888875 45554444333 3456888988766555554 45555 5555
No 28
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=95.73 E-value=0.035 Score=49.28 Aligned_cols=143 Identities=11% Similarity=-0.005 Sum_probs=86.4
Q ss_pred eEEEeecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccC
Q 018852 127 LEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWT 206 (349)
Q Consensus 127 vev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~ 206 (349)
+++......++-..+..|.+|+++.+...-.|.... +.. --.|.....++.++.+ .++++++||.+
T Consensus 65 v~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~----~~~--s~p~~~~~~~l~~~~~---~~i~sl~dL~g----- 130 (287)
T 2vha_A 65 VKLIPITSQNRIPLLQNGTFDFECGSTTNNVERQKQ----AAF--SDTIFVVGTRLLTKKG---GDIKDFADLKG----- 130 (287)
T ss_dssp EEEEECCTTTHHHHHHTTSCSEECSSCBCCHHHHTT----CEE--EEEEEEEEEEEEEETT---SSCCSGGGGTT-----
T ss_pred EEEEECCHHHHHHHHHCCCeeEEeccccCCcchhhc----ccc--cceeeecceEEEEECC---CCCCCHHHcCC-----
Confidence 344444456788899999999998775554444311 111 1245667788889987 56788999874
Q ss_pred CCCCcEEEcCCCccH----HHHHHhcCCceEEEEecCCccccc--cCCCcceeeeecccchhhHhhC-----CcEEecCc
Q 018852 207 AEKPLRVATGFTYLG----PKFMKDNGLKHVVFSTADGALEAA--PAMGIADAILDLVSSGTTLREN-----NLKEIEGG 275 (349)
Q Consensus 207 ~~~~lRVATkYPnla----r~yf~~~Gi~~v~Ii~l~GSvElA--P~lGlAD~IVDIVsTGtTLraN-----gLk~ie~g 275 (349)
+|||+---... ++++.+.|.. ++++...+.-|+. -.-|-+|+++.-..+..-+..+ .++++. .
T Consensus 131 ----~~v~~~~g~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~L~~G~vDa~i~~~~~~~~~~~~~~~~~~~~~~~-~ 204 (287)
T 2vha_A 131 ----KAVVVTSGTTSEVLLNKLNEEQKMN-MRIISAKDHGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNWDIVG-K 204 (287)
T ss_dssp ----CEEEEETTSHHHHHHHHHHHHTTCC-CEEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHTTSSSGGGEEEES-C
T ss_pred ----CEEEEeCCCcHHHHHHHHhhccCCC-ceEEEcCCHHHHHHHHHcCCeeEEEeChHHHHHHHHhCCCCCceEecC-C
Confidence 57876543333 4444444443 5777766654433 4568899887765555554332 466664 2
Q ss_pred eEEEEEEEEEeecc
Q 018852 276 VVLESQAVLVASRK 289 (349)
Q Consensus 276 ~IleSsA~LIaN~~ 289 (349)
.+......+.+++.
T Consensus 205 ~~~~~~~~~~~~k~ 218 (287)
T 2vha_A 205 PQSQEAYGCMLRKD 218 (287)
T ss_dssp CSCEEEEEEEECTT
T ss_pred ccccCceEEEEeCC
Confidence 33344555666654
No 29
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=95.13 E-value=0.036 Score=46.42 Aligned_cols=119 Identities=13% Similarity=0.051 Sum_probs=77.1
Q ss_pred cCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccCCCCCcE
Q 018852 133 RPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLR 212 (349)
Q Consensus 133 R~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~~~~lR 212 (349)
...++-..+..|.+|+.+.+...-.|... .+.. --.+.....++.++++... ..+++||.+ +|
T Consensus 49 ~~~~~~~~l~~g~~D~~~~~~~~~~~r~~----~~~~--s~p~~~~~~~l~~~~~~~~--~~~~~dL~g---------~~ 111 (227)
T 3tql_A 49 PWDSLIPSLKLGKFDALFGGMNITTARQK----EVDF--TDPYYTNSVSFIADKNTPL--TLSKQGLKG---------KI 111 (227)
T ss_dssp CHHHHHHHHHHTSCSEECSSCBCCTTGGG----TEEE--CSCSBCCEEEEEEETTSCC--CCSTTTTTT---------CE
T ss_pred CHHHHHHHHhCCCCCEEEecCcCCHhHHh----heec--ccceeccceEEEEeCCCCC--CCCHHHhCC---------CE
Confidence 34567788999999999887655555432 1211 2356667788888887321 267777764 68
Q ss_pred EEcCCCccHHHHHHhcCCceEEEEecCCccccc--cCCCcceeeeecccchh-hHhhCC
Q 018852 213 VATGFTYLGPKFMKDNGLKHVVFSTADGALEAA--PAMGIADAILDLVSSGT-TLRENN 268 (349)
Q Consensus 213 VATkYPnlar~yf~~~Gi~~v~Ii~l~GSvElA--P~lGlAD~IVDIVsTGt-TLraNg 268 (349)
||+--......++.+.+-..++++.....-|+. -.-|-+|+++.-..+.. .++.++
T Consensus 112 v~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~ 170 (227)
T 3tql_A 112 IGVQGGTTFDSYLQDSFGNSITIQRYPSEEDALMDLTSGRVDAVVGDTPLIKQWLKQNG 170 (227)
T ss_dssp EEEETTSHHHHHHHHHHGGGSEEEEESSHHHHHHHHTTTSSSEEESCHHHHHHHHHHTT
T ss_pred EEEEecccHHHHHHHhccccceEEEcCCHHHHHHHHHcCCcCEEEeChHHHHHHHHhCC
Confidence 998877778888887653214566655544443 45688998877666554 445554
No 30
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=95.03 E-value=0.05 Score=45.81 Aligned_cols=124 Identities=14% Similarity=0.113 Sum_probs=80.4
Q ss_pred EeecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccE-EEEEEEeCCCccCcccchHHhhcCCccCCC
Q 018852 130 WFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDC-RLSLAIPKYGIFENINSLRELAQMPQWTAE 208 (349)
Q Consensus 130 ~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~C-RLvvAvP~~~~~~dv~sl~dL~~~~~~~~~ 208 (349)
......+.-..+..|.+|+++.|...-.|.... +.. --++..- ..++.++++ . +.+++||.+
T Consensus 50 ~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~----~~~--s~p~~~~~~~~~~~~~~---~-~~~~~dL~g------- 112 (229)
T 2y7i_A 50 TNQSFDSLIPSLRFKKFDAVIAGMDMTPKREQQ----VSF--SQPYYEGLSAVVVTRKG---A-YHTFADLKG------- 112 (229)
T ss_dssp EECCGGGHHHHHHTTSCSEECSSCBCCHHHHTT----SEE--CSCSBCCCCEEEEEETT---S-CCSTGGGTT-------
T ss_pred EEcCHHHHHHHHhCCCceEEEecCccCHHHhcc----eee--ccccccCCcEEEEEeCC---C-CCCHHHHCC-------
Confidence 333446788899999999998776554444311 111 1245555 678888887 3 778888874
Q ss_pred CCcEEEcCCCccHHHHHHhcCCceEEEEecCCccccc--cCCCcceeeeecccchhhHhhC--CcEEec
Q 018852 209 KPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAA--PAMGIADAILDLVSSGTTLREN--NLKEIE 273 (349)
Q Consensus 209 ~~lRVATkYPnlar~yf~~~Gi~~v~Ii~l~GSvElA--P~lGlAD~IVDIVsTGtTLraN--gLk~ie 273 (349)
+|||+--......|+++..- .++++.....-++. -.-|-+|+++.-..++..+.++ +++++.
T Consensus 113 --~~v~~~~g~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~~~~~ 178 (229)
T 2y7i_A 113 --KKVGLENGTTHQRYLQDKQQ-AITPVAYDSYLNAFTDLKNNRLEGVFGDVAAIGKWLKNNPDYAIMD 178 (229)
T ss_dssp --CEEEEETTSHHHHHHHHHCT-TSEEEEESCHHHHHHHHHTTSCSEEEEEHHHHHHHHTTCTTEEECS
T ss_pred --CEEEEecCCcHHHHHHHhCC-CCeEEecCCHHHHHHHHHcCCcCEEEechHHHHHHHHhCCCeEEec
Confidence 68998777777888887632 24555544443332 4458899988877776655443 377664
No 31
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=94.81 E-value=0.093 Score=47.03 Aligned_cols=125 Identities=14% Similarity=0.097 Sum_probs=66.5
Q ss_pred eEEEeecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccC
Q 018852 127 LEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWT 206 (349)
Q Consensus 127 vev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~ 206 (349)
+++.+.-+.++...+..|.+|+|+++...+.+.... ..++. ....++...-.+.++++ . +||+
T Consensus 40 ve~~~~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~vlv~~~---~-----~DLk------ 102 (280)
T 1zbm_A 40 IEHVIEDIETLNRKAFNAEYEVTAISAHAYALLDDK-YRILS--AGASVGDGYGPVVVAKS---E-----ISLD------ 102 (280)
T ss_dssp EEEEECCHHHHHHHGGGTCCSEEEEEHHHHTTSTTT-EEECS--SCCEEESSCCCEEEESS---C-----CCCT------
T ss_pred EEEEeCCHHHHHHHHHcCCCCEEEECHHHHHHhcCC-CcEEe--eccccCCCeeEEEEEcC---c-----hhcC------
Confidence 555555667778889999999999865554432211 22210 02223311122344443 1 3444
Q ss_pred CCCCcEEEcCCCccHHHHHHhcCCceEEEEecCCcccccc--CCCcceeeeecccchhhHhhCCcEEe
Q 018852 207 AEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAP--AMGIADAILDLVSSGTTLRENNLKEI 272 (349)
Q Consensus 207 ~~~~lRVATkYPnlar~yf~~~Gi~~v~Ii~l~GSvElAP--~lGlAD~IVDIVsTGtTLraNgLk~i 272 (349)
++|||+.-..-+..++-+.-+..++++.+. ..|+.. .-|-+|+++=.-+...++++.|++++
T Consensus 103 ---GK~Iav~~~~s~~~~ll~~~l~~~~~~~~~-~~~~~~al~~G~vDa~~~~~~~~~~~~~~g~~~~ 166 (280)
T 1zbm_A 103 ---GKRIAVPGRYTTANLLLKLAVEDFEPVEMP-FDRIIQAVLDEEVDAGLLIHEGQITYADYGLKCV 166 (280)
T ss_dssp ---TCEEEESCTTSHHHHHHHHHCSSCEEEECC-GGGHHHHHHTTSSSEEEECSGGGGTGGGGTCEEE
T ss_pred ---CCEEEecCCCcHHHHHHHHHhccCceEecC-HHHHHHHHHcCCCCEEEEechHHhHHHhcCCeEe
Confidence 479998655555555333212234666653 333332 35888987633333444667787655
No 32
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=94.56 E-value=0.28 Score=40.52 Aligned_cols=195 Identities=12% Similarity=0.003 Sum_probs=107.0
Q ss_pred CCCCceEEEecCCCCchHHHHHHHHHCCCccCCCCCCceEEecCCCCCeE--EEeecCCchhhhcccCceeeeeecccee
Q 018852 79 SERDEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLE--VWFQRPKDIVRKLLSGDLDLGIVGLDTV 156 (349)
Q Consensus 79 ~~~~~LrIALP~KGRL~e~t~~LL~~aGi~~~~~~~R~L~~~~~~~p~ve--v~~vR~~DIP~yV~~G~aDlGIvG~DvL 156 (349)
...+.||||.+ -+-...-..+++.+. . + ..|+++ +......++...+..|.+|+||+....-
T Consensus 5 ~~~g~l~Ig~~-~~~~~~~l~~~l~~f--~------~-------~~P~i~i~i~~~~~~~~~~~l~~g~~Di~i~~~~~~ 68 (222)
T 4ab5_A 5 GEAGELRIAVE-CHTCFDWLMPAMGEF--R------P-------MWPQVELDIVSGFQADPVGLLLQHRADLAIVSEAEK 68 (222)
T ss_dssp CTTEEEEEECC-CTTTHHHHHHHHHHH--H------H-------HSTTEEEEEECCCCSCTHHHHHTTSCSEEEESCCCC
T ss_pred CccceEEEEEe-hHHHHHHHHHHHHHH--H------H-------HCCCcEEEEecCCHHHHHHHHHcCCcCEEEecCCCC
Confidence 45678999998 344333333444431 0 0 123343 3344558999999999999999965421
Q ss_pred cccCCCCccceeecCCCCcccEEEEEEEeCCCccC--cccchHHhhcCCccCCCCCcEEE----cCCCccHHHHHHhcCC
Q 018852 157 SEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFE--NINSLRELAQMPQWTAEKPLRVA----TGFTYLGPKFMKDNGL 230 (349)
Q Consensus 157 ~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~--dv~sl~dL~~~~~~~~~~~lRVA----TkYPnlar~yf~~~Gi 230 (349)
..++. -..++..+++++++.+..+. +.-+++||.+.+ -|. +.+.....++|.+.|+
T Consensus 69 ------~~~~~----~~~l~~~~~~~v~~~~~pl~~~~~i~~~dL~~~~--------~i~~~~~~~~~~~~~~~~~~~~~ 130 (222)
T 4ab5_A 69 ------QNGIS----FQPLFAYEMVGICAPDHPLAAKNVWTAEDFIGET--------LITYPVPDEMLDLPKKILIPKNI 130 (222)
T ss_dssp ------CTTEE----EEEEEEEEEEEEECTTSGGGGCSEECGGGGSSSC--------EEECSSCGGGCHHHHHTTGGGTC
T ss_pred ------cCCeE----EEEeecCcEEEEecCCChhhccCCcCHHHHcCCC--------EEecCCCcHHHHHHHHHHHHcCC
Confidence 12222 23467889999999874322 122567776531 122 2344566778888887
Q ss_pred ceEEEEecCCccccc---cCCCcceeeeecccchhhHhhCCcEEec-CceEEEEEEEEEeecchhhhhcCchhHHHHHHH
Q 018852 231 KHVVFSTADGALEAA---PAMGIADAILDLVSSGTTLRENNLKEIE-GGVVLESQAVLVASRKSLIRRKGVLDATHEILE 306 (349)
Q Consensus 231 ~~v~Ii~l~GSvElA---P~lGlAD~IVDIVsTGtTLraNgLk~ie-~g~IleSsA~LIaN~~s~~~k~~~~~~i~~li~ 306 (349)
.. ..+. ..+.+.+ ..-|..=+|+.-...-.-++..+|+.+. ++.-....-.++.++..... ..++.+++
T Consensus 131 ~~-~~~~-~~~~~~~~~~v~~g~gi~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~f~~ 203 (222)
T 4ab5_A 131 NP-PRRH-SELTIAIIQLVASRRGIAALPYWTVMPYLEKGYVVHRQITADGLQSKLYAAIRTEDTDK-----SYLNNFCQ 203 (222)
T ss_dssp CC-CEEE-CSCHHHHHHHHHTTSCBEEEEHHHHHHHHHTTSCEEEEESTTCCEEEEEEEEEGGGTTC-----HHHHHHHH
T ss_pred CC-CeEe-cCCHHHHHHHHHcCCeEEEcchHHhHHHhhcCcEEEEecCCCccceEEEEEEeCCcccC-----HHHHHHHH
Confidence 53 3333 3344332 1223322344322222335556688753 11245667777777765422 35667777
Q ss_pred HHHHHHhh
Q 018852 307 RLEAHLRA 314 (349)
Q Consensus 307 rl~~vl~A 314 (349)
.++.....
T Consensus 204 ~l~~~~~~ 211 (222)
T 4ab5_A 204 IIRERGFA 211 (222)
T ss_dssp HHHHHHHH
T ss_pred HHHhhhhc
Confidence 77665443
No 33
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=94.51 E-value=0.051 Score=47.59 Aligned_cols=143 Identities=15% Similarity=0.007 Sum_probs=89.9
Q ss_pred EEEeecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccCC
Q 018852 128 EVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTA 207 (349)
Q Consensus 128 ev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~ 207 (349)
++..+.-.+.-..+..|.+|+++.|...-.|.... +.. --.|..-..++.++++ .++++++||.+
T Consensus 63 ~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~----~~f--s~p~~~~~~~~~~~~~---~~i~~~~dL~g------ 127 (268)
T 3hv1_A 63 EWQAIDWDMKETELKNGTIDLIWNGYSVTDERKQS----ADF--TEPYMVNEQVLVTKKS---SGIDSVAGMAG------ 127 (268)
T ss_dssp EEEECCGGGHHHHHHHTSCSEECSSCBCCHHHHTT----CEE--CCCCEEECEEEEEEGG---GCCCSSGGGTT------
T ss_pred EEEECCHHHHHHHHHCCCCCEEEecCccCHHHHhc----CcC--cHHHeeCceEEEEECC---CCCCCHHHhCC------
Confidence 34444457788899999999999776665555421 111 1256677788889887 47788888874
Q ss_pred CCCcEEEcCCCccHHHHHHhcC------CceEEEEecCCccccc--cCCCcceeeeecccchhh-HhhCC----cEEecC
Q 018852 208 EKPLRVATGFTYLGPKFMKDNG------LKHVVFSTADGALEAA--PAMGIADAILDLVSSGTT-LRENN----LKEIEG 274 (349)
Q Consensus 208 ~~~lRVATkYPnlar~yf~~~G------i~~v~Ii~l~GSvElA--P~lGlAD~IVDIVsTGtT-LraNg----Lk~ie~ 274 (349)
+|||+--......+|.+.+ ...++++.....-|+. -.-|-+|+++.-..++.. ++.++ ++++..
T Consensus 128 ---~~i~v~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~l~~~~~ 204 (268)
T 3hv1_A 128 ---KTLGAQAGSSGYDAFNASPKILKDVVANQKVVQYSTFTQALIDLNSGRIDGLLIDRVYANYYLEKSGVLDQYNVMPA 204 (268)
T ss_dssp ---CCEEEETTCHHHHHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHTTCGGGEEEEEC
T ss_pred ---CEEEEEeCCchHHHHHHhhHHHhhhcccceEEEeCCHHHHHHHHHcCCCCEEEeCHHHHHHHHHhCCCCCceEECCC
Confidence 6899888888888887664 2223555544433322 345888988766665544 44444 566641
Q ss_pred ceEEEEEEEEEeecc
Q 018852 275 GVVLESQAVLVASRK 289 (349)
Q Consensus 275 g~IleSsA~LIaN~~ 289 (349)
.+......+..++.
T Consensus 205 -~~~~~~~~~~~~k~ 218 (268)
T 3hv1_A 205 -GYEGESFAVGARKV 218 (268)
T ss_dssp -SSCCEEECCEECTT
T ss_pred -CCCCCcEEEEEcCC
Confidence 23344555555554
No 34
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=94.07 E-value=0.1 Score=44.58 Aligned_cols=125 Identities=16% Similarity=0.106 Sum_probs=79.6
Q ss_pred EEEeecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcc--cEEEEEEEeCCCccCcccchHHhhcCCcc
Q 018852 128 EVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYG--DCRLSLAIPKYGIFENINSLRELAQMPQW 205 (349)
Q Consensus 128 ev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG--~CRLvvAvP~~~~~~dv~sl~dL~~~~~~ 205 (349)
++......++-..+..|.+|+.+.|...-.|.... +.. -.|. ....++.++++ .++++++||.+
T Consensus 53 ~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~----~~~---~p~~~~~~~~~~~~~~~---~~i~~~~dL~g---- 118 (242)
T 3del_B 53 DVREFSFDALILNLKQHRIDAVITGMSITPSRLKE----ILM---IPYYGEEIKHLVLVFKG---ENKHPLPLTQY---- 118 (242)
T ss_dssp EEEECCGGGHHHHHHTTSSSEECSSBBCCHHHHTT----EEE---EEEEEEEESEEEEEEES---CCSCCCCGGGS----
T ss_pred EEEEcCHHHHHHHHhCCCcCEEEecCcCCHHHHhc----ccc---eeeeecCCceEEEEeCC---CCCCCHHHhCC----
Confidence 33444456788899999999998776655554321 211 2334 55567788877 56788888874
Q ss_pred CCCCCcEEEcCCCccHHHHHHhcCCceEEEEecCCcccc--ccCCCcceeeeecccchhhHhh-CC-cEEec
Q 018852 206 TAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEA--APAMGIADAILDLVSSGTTLRE-NN-LKEIE 273 (349)
Q Consensus 206 ~~~~~lRVATkYPnlar~yf~~~Gi~~v~Ii~l~GSvEl--AP~lGlAD~IVDIVsTGtTLra-Ng-Lk~ie 273 (349)
+|||+---.....++.+.. .++++.....-|+ +-.-|-+|+++.-..+...+.. ++ ++++.
T Consensus 119 -----~~i~v~~g~~~~~~l~~~~--~~~~~~~~~~~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~~~~~~~ 183 (242)
T 3del_B 119 -----RSVAVQTGTYQEAYLQSLS--EVHIRSFDSTLEVLMEVMHGKSPVAVLEPSIAQVVLKDFPALSTAT 183 (242)
T ss_dssp -----SCEEEETTSHHHHHHHHST--TCCEEEESSHHHHHHHHHTTSSSEEEECHHHHHHHGGGCTTEEEEE
T ss_pred -----CEEEEEcCcHHHHHHHhCC--CceEEEECCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCeEEec
Confidence 5788877777788888732 2455555544443 2456889988776666655443 32 55553
No 35
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=94.03 E-value=0.17 Score=45.08 Aligned_cols=157 Identities=18% Similarity=0.114 Sum_probs=84.4
Q ss_pred CeEEEeecCCchhhhcccCceeeeeeccceecccCCCCccceeecC-CCCcc-cEEEEEEEeCCCccCcccchHHhhcCC
Q 018852 126 NLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHD-ALDYG-DCRLSLAIPKYGIFENINSLRELAQMP 203 (349)
Q Consensus 126 ~vev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~-dLgfG-~CRLvvAvP~~~~~~dv~sl~dL~~~~ 203 (349)
++++.+--+.++...+..|.+|+|+++........ .+ +.++. ....| .+..++..+.+ ++||+
T Consensus 31 ~v~~~~~~~~~~~~al~~G~~D~~~~~~~~~~~~~---~~-~~i~~~~~~~~~~~~~~lv~~~~--------~~dLk--- 95 (272)
T 2czl_A 31 PLEPVLEDVETLNRWALEGRLPLTKLSYAAYAQVR---DR-YVALRSGGALGRGVGPLVVARGP--------LQALE--- 95 (272)
T ss_dssp CEEEEECCHHHHHHHHHTTCCSEEEEEHHHHTTCT---TT-EEECSSSCEEESSCCCEEEESSC--------CSCCT---
T ss_pred eeEEecCCHHHHHHHHHcCCCCEEEecHHHHHhhh---Cc-eEEeecccccCCCCceEEEECCC--------hHHhC---
Confidence 36664555567778899999999999876554322 12 22222 11123 22222333322 34444
Q ss_pred ccCCCCCcEEEcCCCccHHHHHHhcCCceEEEEecCCcccccc--CCCcceeeeecccchhhHhhCCcEEecC-ce----
Q 018852 204 QWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAP--AMGIADAILDLVSSGTTLRENNLKEIEG-GV---- 276 (349)
Q Consensus 204 ~~~~~~~lRVATkYPnlar~yf~~~Gi~~v~Ii~l~GSvElAP--~lGlAD~IVDIVsTGtTLraNgLk~ie~-g~---- 276 (349)
++|||+..+..+..++-+.=.+.++++.+... ++.. .-|-.|+++=.-+--.|+++.|++++.+ +.
T Consensus 96 ------Gk~Ia~~~~~~~~~~ll~~ll~~~~~~~~~~~-~~~~al~~G~vDa~~~~~ep~~~~~~~g~~~~~d~~~~w~~ 168 (272)
T 2czl_A 96 ------GLRVAVPGRHTTAYFLLSLYAQGFVPVEVRYD-RILPMVAQGEVEAGLIIHESRFTYPRYGLVQVVDLGAWWEE 168 (272)
T ss_dssp ------TCEEEESCTTSHHHHHHHHHCSSCEEEECCGG-GHHHHHHTTSSSEEEECTTHHHHGGGGTCEEEEEHHHHHHH
T ss_pred ------CCEEEeCCCCchHHHHHHHHhccCceeecChH-HHHHHHHCCCCCEEEEecchhhhhhhcCCccHHHHHHHHHH
Confidence 47999876666554433321122366665433 4433 3588899884424444577788766531 10
Q ss_pred ---EEEEEEEEEeecchhhhhcCchhHHHHHHHHHHH
Q 018852 277 ---VLESQAVLVASRKSLIRRKGVLDATHEILERLEA 310 (349)
Q Consensus 277 ---IleSsA~LIaN~~s~~~k~~~~~~i~~li~rl~~ 310 (349)
.--..+.+++++... + +.++.+++.+..
T Consensus 169 ~~g~~~~~~~~~~~~~~~---p---~~v~~~~~a~~~ 199 (272)
T 2czl_A 169 RTGLPLPLGAILARRDLG---E---GLIRALDEAVRR 199 (272)
T ss_dssp HHSSCEEEEEEEEEGGGC---H---HHHHHHHHHHHH
T ss_pred hcCCCCCcchhhcccccC---H---HHHHHHHHHHHH
Confidence 112457888877652 2 345555554443
No 36
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=93.83 E-value=0.29 Score=40.86 Aligned_cols=200 Identities=13% Similarity=0.122 Sum_probs=109.5
Q ss_pred CCCCceEEEecCCCCchHHHHHHHHHCCCccCCCCCCceEEecCCCCCeEEEe--ecCCchhhhcccCceeeeeecccee
Q 018852 79 SERDEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWF--QRPKDIVRKLLSGDLDLGIVGLDTV 156 (349)
Q Consensus 79 ~~~~~LrIALP~KGRL~e~t~~LL~~aGi~~~~~~~R~L~~~~~~~p~vev~~--vR~~DIP~yV~~G~aDlGIvG~DvL 156 (349)
...+.||||.+ -.-...-..+++.+ +. + ..|++++.+ ....++...+..|.+|+||+....-
T Consensus 8 ~~~g~l~Ig~~-~~~~~~~l~~~l~~--~~------~-------~~P~v~i~~~~~~~~~~~~~l~~g~~Dl~i~~~~~~ 71 (232)
T 3ho7_A 8 SLTGRLNIAVL-PTIAPYLLPRVFPI--WK------K-------ELAGLEIHVSEMQTSRCLASLLSGEIDMAIIASKAE 71 (232)
T ss_dssp --CEEEEEEEC-TTTHHHHHHHHHHH--HH------H-------HSTTEEEEEEECCHHHHHHHHHHTSCSEEEESSCCC
T ss_pred ccceeEEEEec-cccchhhhHHHHHH--HH------H-------HCCCcEEEEEeCCHHHHHHHHHcCCCCEEEEcCCCC
Confidence 34568999998 23222222233333 10 0 124454444 4678899999999999999976432
Q ss_pred cccCCCCccceeecCCCCcccEEEEEEEeCCCcc--CcccchHHhhcCCccCCCCCcEEEcCCCccHHHHHHhcCCceEE
Q 018852 157 SEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIF--ENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVV 234 (349)
Q Consensus 157 ~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~--~dv~sl~dL~~~~~~~~~~~lRVATkYPnlar~yf~~~Gi~~v~ 234 (349)
. .++. -..++..+++++++.+..+ ...-+++||.+.+...... .+.+.....++|.+.|+....
T Consensus 72 ~------~~l~----~~~l~~~~~~~v~~~~hpl~~~~~~~~~dL~~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~ 137 (232)
T 3ho7_A 72 T------EGLE----DDLLYYEEFLGYVSRCEPLFEQDVIRTTEVNPHRLWLLDE----GHCFRDQLVRFCQMKGLHERQ 137 (232)
T ss_dssp C------TTEE----EEEEEEEEEEEEECTTSGGGGSSSBCGGGCCGGGBCCCTT----TTTTTSTTHHHHTCTTTTCSS
T ss_pred C------CCeE----EEEecccCEEEEEcCCCccccCCCcCHHHhcCCCEEEecC----CCcHHHHHHHHHHHcCCCcCc
Confidence 1 1222 2346788999999987422 1223566765432111000 123456788899998874123
Q ss_pred EEecCCccccc---cCCCcceeeeecccchhhHhhCCcEEec-CceEEEEEEEEEeecchhhhhcCchhHHHHHHHHHHH
Q 018852 235 FSTADGALEAA---PAMGIADAILDLVSSGTTLRENNLKEIE-GGVVLESQAVLVASRKSLIRRKGVLDATHEILERLEA 310 (349)
Q Consensus 235 Ii~l~GSvElA---P~lGlAD~IVDIVsTGtTLraNgLk~ie-~g~IleSsA~LIaN~~s~~~k~~~~~~i~~li~rl~~ 310 (349)
++.-..+.+.+ ..-|..=+|+.-.....-++.++|+.+. ++......-.++.++..... ..++.+++.++.
T Consensus 138 ~~~~~~~~~~~~~~v~~g~gi~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~l~~ 212 (232)
T 3ho7_A 138 TAYSGGSMEAFMRLVESGQGITFIPQLTVEQLSPSQKELVRPFGMPRPVREVRLAVRQDYSRR-----KLREQLIGLLRS 212 (232)
T ss_dssp EEEESCCHHHHHHHHHTTCCEEEEEGGGGGGSCHHHHTTEECBCSSEEEEEEEEEEETTCSCH-----HHHHHHHHHHHT
T ss_pred eeEEeCCHHHHHHHHHcCCcEEEecHHHhhhhcccCceEEEEccCCCceEEEEEEEeCCCccC-----HHHHHHHHHHHH
Confidence 33334555543 2234443555443333334455676554 12456677778877765322 356777777776
Q ss_pred HHh
Q 018852 311 HLR 313 (349)
Q Consensus 311 vl~ 313 (349)
.+.
T Consensus 213 ~~~ 215 (232)
T 3ho7_A 213 AVP 215 (232)
T ss_dssp TSC
T ss_pred Hhc
Confidence 554
No 37
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=93.81 E-value=0.29 Score=41.58 Aligned_cols=146 Identities=12% Similarity=0.055 Sum_probs=92.6
Q ss_pred EEEeecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccCC
Q 018852 128 EVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTA 207 (349)
Q Consensus 128 ev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~ 207 (349)
++..+.-.+.-..+..|.+|+.+.|...-.|.... +. + --.|.....++.++.+. -..+++++||.+
T Consensus 57 ~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~----~~-f-s~p~~~~~~~~~~~~~~-~~~i~~~~dL~~------ 123 (239)
T 3kbr_A 57 VVVPTSWPNLMRDFADDRFDIAMSGISINLERQRQ----AY-F-SIPYLRDGKTPITLCSE-EARFQTLEQIDQ------ 123 (239)
T ss_dssp EEEECCTTTHHHHHHTTCCSEECSSCBCCHHHHTT----CE-E-CSCSEEECEEEEEEGGG-GGGGSSHHHHSS------
T ss_pred EEEEeCHHHHHHHHHCCCcCEEEeCCcCCHHHcCc----cc-c-chHHhccCcEEEEECCc-ccccCCHHHhcC------
Confidence 33444456778899999999998887666665421 11 1 23667777788888752 136788999873
Q ss_pred CCCcEEEcCCCccHHHHHHhcCCceEEEEecCCcccc--ccCCCcceeeeecccchhhHhh-C-CcEEecCce-EEEEEE
Q 018852 208 EKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEA--APAMGIADAILDLVSSGTTLRE-N-NLKEIEGGV-VLESQA 282 (349)
Q Consensus 208 ~~~lRVATkYPnlar~yf~~~Gi~~v~Ii~l~GSvEl--AP~lGlAD~IVDIVsTGtTLra-N-gLk~ie~g~-IleSsA 282 (349)
+++|||+---.....++++.. ...+++.....-|+ +-.-|-+|+++.--.++.-+.. + +++++..+. +.....
T Consensus 124 -~g~~v~~~~g~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (239)
T 3kbr_A 124 -PGVTAIVNPGGTNEKFARANL-KKARILVHPDNVTIFQQIVDGKADLMMTDAIEARLQSRLHPELCAVHPQQPFDFAEK 201 (239)
T ss_dssp -TTCEEEECTTSHHHHHHHHHC-SSSEEEECCCTTTHHHHHHTTSCSEEEEEHHHHHHHHHHCTTEEECCCC-CCCCEEE
T ss_pred -CCcEEEEcCCCcHHHHHHHhC-CCCceEEeCCHHHHHHHHHcCCcCEEEEchHHHHHHHHhCCCcEEecCCCCccccce
Confidence 247999877777788888753 23466665544443 3556889988876666655443 3 566664112 344455
Q ss_pred EEEeec
Q 018852 283 VLVASR 288 (349)
Q Consensus 283 ~LIaN~ 288 (349)
.+..++
T Consensus 202 ~~~~~k 207 (239)
T 3kbr_A 202 AYLLPR 207 (239)
T ss_dssp CCEECS
T ss_pred EEEEcC
Confidence 555665
No 38
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=93.61 E-value=0.58 Score=43.27 Aligned_cols=139 Identities=17% Similarity=0.186 Sum_probs=77.8
Q ss_pred ecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcc-------------------------cEEEEEEEeC
Q 018852 132 QRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYG-------------------------DCRLSLAIPK 186 (349)
Q Consensus 132 vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG-------------------------~CRLvvAvP~ 186 (349)
..+.|+...|..|.+|+|+++.-.+...-.. ..++ +|+|. ..++.-..+.
T Consensus 46 g~~~~~~e~v~~G~id~~~~~~~~~~~~~p~----~~~~-~lPfl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~ 120 (301)
T 2pfy_A 46 LKRPEVKRGVQQGVVQIGEVLVSALGNEDPL----FEID-SVPFLASSFNESEKLWKATRPLLAQRLDKQGIVLVYGSPW 120 (301)
T ss_dssp SCGGGHHHHHHHTSSSEEEEEGGGGTTTCGG----GGGG-GSTTTSCSHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEC
T ss_pred CChHHHHHHHHCCCeeeehhhhhhhhccCcc----cccc-cCCcccCCHHHHHHHHHHhhHHHHHHHHHCCCEEEEeecC
Confidence 4668999999999999999985433222100 0001 22221 1121111111
Q ss_pred CC--c--cCcccchHHhhcCCccCCCCCcEEEcCCCccHHHHHHhcCCceEEEEecCCccccccCC--Ccceeeeecccc
Q 018852 187 YG--I--FENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAM--GIADAILDLVSS 260 (349)
Q Consensus 187 ~~--~--~~dv~sl~dL~~~~~~~~~~~lRVATkYPnlar~yf~~~Gi~~v~Ii~l~GSvElAP~l--GlAD~IVDIVsT 260 (349)
+. . -.+|++++||++ +||.|- .....++|+..|. ..+.+ ..-|+...+ |..|+...-.
T Consensus 121 ~~~~~~~~~pI~s~~DlkG---------~KiR~~-~~~~~~~~~~lGa---~pv~~-~~~E~y~ALq~G~vDg~~~~~-- 184 (301)
T 2pfy_A 121 PPQGIYTKKPVAALADLKG---------TRFRAY-SASTSHMAALMGA---VPTTV-QTPEVPQAFSTGVIDAMLTSP-- 184 (301)
T ss_dssp CCCEEEESSCCSSGGGGTT---------CEEEEC-SHHHHHHHHHTTS---EEEEC-CGGGHHHHHHTTSCSBEEECH--
T ss_pred CCcceecCCCCCCHHHhCC---------CEEeec-ChhHHHHHHHcCC---cceec-cHHHHHHHHhcceeeeEecCc--
Confidence 00 0 157999999986 456553 3456789999996 34554 446666554 7777774333
Q ss_pred hhhHhhCCcEEec-----CceEEEEEEEEEeecchhhh
Q 018852 261 GTTLRENNLKEIE-----GGVVLESQAVLVASRKSLIR 293 (349)
Q Consensus 261 GtTLraNgLk~ie-----~g~IleSsA~LIaN~~s~~~ 293 (349)
.++..+++.++. .+. ......+++|+..|..
T Consensus 185 -~~~~~~~~~ev~k~~~~~~~-~~~~~~~~~n~~~~~~ 220 (301)
T 2pfy_A 185 -ATGVDSQAWDYVKYYYDAQA-FIPQSFVIANKRAFQR 220 (301)
T ss_dssp -HHHHHTTGGGTCCEEEECCC-CCCEEEEEEEHHHHHH
T ss_pred -cccccccHHHHhhhhccccc-ccceeeEEEcHHHHhc
Confidence 334445554332 111 2244678899998764
No 39
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=93.46 E-value=0.14 Score=48.94 Aligned_cols=115 Identities=13% Similarity=0.082 Sum_probs=70.3
Q ss_pred EEEEEeCCCccCcccchHHhhcCCccCCCCCcEEEcCCC----------c--------------------cHHHHHHhcC
Q 018852 180 LSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFT----------Y--------------------LGPKFMKDNG 229 (349)
Q Consensus 180 LvvAvP~~~~~~dv~sl~dL~~~~~~~~~~~lRVATkYP----------n--------------------lar~yf~~~G 229 (349)
..+.++++ .+|++++||++ +|||..-+ + ..+.++++.|
T Consensus 101 ~~i~v~~d---s~I~s~~DLkG---------k~Igv~~~~~~~~~gs~~~~~~~~~~~~~~~~~gs~~~~~~~~~L~~~G 168 (365)
T 2de3_A 101 QGFFVRDD---SPITAAADLAG---------RRIGVSASAIRILRGQLGDYLELDPWRQTLVALGSWEARALLHTLEHGE 168 (365)
T ss_dssp EEEEEETT---CSCCSGGGGTT---------CEEEECHHHHHHHHTCCTTGGGSCHHHHHHHHTTHHHHHHHHHHHHHTT
T ss_pred ceEEECCC---CCCCCHHHhCC---------CeEEeecccccccCCCcccccccchhhhhhhccchhhHHHHHHHHHHcC
Confidence 35566776 68899999885 68886431 1 2688999999
Q ss_pred Cc--eEEEEecCCcc---------------------------ccccCCCcceeeeecccchhhHhhCCcEEecCce--EE
Q 018852 230 LK--HVVFSTADGAL---------------------------EAAPAMGIADAILDLVSSGTTLRENNLKEIEGGV--VL 278 (349)
Q Consensus 230 i~--~v~Ii~l~GSv---------------------------ElAP~lGlAD~IVDIVsTGtTLraNgLk~ie~g~--Il 278 (349)
++ .++++.+..+- -.+-.-|-.|+++----....+.+.|.+++.+.. ..
T Consensus 169 l~~~dv~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~G~vDA~~~~~p~~~~~~~~g~~~l~~~~~~~~ 248 (365)
T 2de3_A 169 LGVDDVELVPISSPGVDVPAEQLEESATVKGADLFPDVARGQAAVLASGDVDALYSWLPWAGELQATGARPVVDLGLDER 248 (365)
T ss_dssp CCGGGSEEEECCCTTTCCCHHHHHHSSBSSHHHHSTTHHHHHHHHHHSSSCSEEEEEHHHHHHHHHTTEEESSCGGGSGG
T ss_pred CCHHHeEEEECCCccccccccccccccccccccccccchhhHHHHHhCCCcCEEEEcchhHHHHHhCCCEEEEeCcccCC
Confidence 83 57888876531 1122337888876432234445567888775311 11
Q ss_pred -EEEEEEEeecchhhhhcCchhHHHHHHHHHH
Q 018852 279 -ESQAVLVASRKSLIRRKGVLDATHEILERLE 309 (349)
Q Consensus 279 -eSsA~LIaN~~s~~~k~~~~~~i~~li~rl~ 309 (349)
.....+++++...+.++ +.++.|++.+.
T Consensus 249 ~~~~~~l~~~~~~~~~~p---~~v~~~~~a~~ 277 (365)
T 2de3_A 249 NAYASVWTVSSGLVRQRP---GLVQRLVDAAV 277 (365)
T ss_dssp GCEEEEEEEEHHHHHHCH---HHHHHHHHHHH
T ss_pred CCceEEEEEcHHHHHHCH---HHHHHHHHHHH
Confidence 13457778877665554 45566655554
No 40
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=93.40 E-value=0.85 Score=42.25 Aligned_cols=85 Identities=18% Similarity=0.141 Sum_probs=53.1
Q ss_pred CcccchHHhhcCCccCCCCCcEEEcCCCccHHHHHHhcCCceEEEEecCCccccccCC--CcceeeeecccchhhHhhCC
Q 018852 191 ENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAM--GIADAILDLVSSGTTLRENN 268 (349)
Q Consensus 191 ~dv~sl~dL~~~~~~~~~~~lRVATkYPnlar~yf~~~Gi~~v~Ii~l~GSvElAP~l--GlAD~IVDIVsTGtTLraNg 268 (349)
.+|++++||++ +||.|- .....++|+..|. ..+.+ ..-|+...+ |..|+...-.. ++..++
T Consensus 128 ~pI~s~~DlkG---------~KiR~~-~~~~~~~~~~lGa---~pv~~-~~~E~y~ALq~G~vDg~~~~~~---~~~~~~ 190 (301)
T 2pfz_A 128 RDIKQVSDMKG---------LKWRAY-SPVTAKIAELVGA---QPVTV-QQAELAQAMATGVIDSYMSSGS---TGFDTK 190 (301)
T ss_dssp SCCSSGGGGTT---------CEEEES-SHHHHHHHHHHTC---EEEEC-CGGGHHHHHHTTSCSEEEECHH---HHHHTT
T ss_pred CCCCChHHhcC---------CEEecC-ChhHHHHHHHcCC---cceec-CHHHHHHHHhcCeeeEEecCcc---cccccc
Confidence 57999999986 466653 3456789999996 44554 446666554 88887744333 334455
Q ss_pred cEEec-----CceEEEEEEEEEeecchhhh
Q 018852 269 LKEIE-----GGVVLESQAVLVASRKSLIR 293 (349)
Q Consensus 269 Lk~ie-----~g~IleSsA~LIaN~~s~~~ 293 (349)
+.++. .+.. .....+++|+..|..
T Consensus 191 ~~ev~ky~~~~~~~-~~~~~~~~n~~~~~~ 219 (301)
T 2pfz_A 191 TYEYIKKFYDTEAW-LPKNAVLVNKKAFDA 219 (301)
T ss_dssp GGGTCCEEECCCCC-CCEEEEEEEHHHHHT
T ss_pred HHHHhhhheecccc-cceeEEEEcHHHHhc
Confidence 53332 1122 245678899998764
No 41
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=93.37 E-value=0.064 Score=45.58 Aligned_cols=124 Identities=16% Similarity=0.053 Sum_probs=74.9
Q ss_pred EEeecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcc-cchHHhhcCCccCC
Q 018852 129 VWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENI-NSLRELAQMPQWTA 207 (349)
Q Consensus 129 v~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv-~sl~dL~~~~~~~~ 207 (349)
+......++-..+..|.+|+++.|.-.-.|... .+.. --+|.....++.++++. ++ .+++||.+
T Consensus 47 ~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~----~~~~--s~p~~~~~~~l~~~~~~---~~~~~~~dL~g------ 111 (239)
T 1lst_A 47 WVASDFDALIPSLKAKKIDAIISSLSITDKRQQ----EIAF--SDKLYAADSRLIAAKGS---PIQPTLESLKG------ 111 (239)
T ss_dssp EEECCGGGHHHHHHTTSCSEECSSCBCCHHHHH----HCEE--CSCSBCCCEEEEEETTC---CCCSSHHHHTT------
T ss_pred EEeCCHHHHHHHHhCCCCCEEEECcCcCHHHhh----ceee--cccceeCceEEEEeCCC---CCCCCHHHhCC------
Confidence 334445678888999999999876554444421 1111 12566677888888873 34 48899874
Q ss_pred CCCcEEEcCCCccHHHHHHhc----CCceEEEEecCCcccc--ccCCCcceeeeecccchhh--HhhC---CcEEec
Q 018852 208 EKPLRVATGFTYLGPKFMKDN----GLKHVVFSTADGALEA--APAMGIADAILDLVSSGTT--LREN---NLKEIE 273 (349)
Q Consensus 208 ~~~lRVATkYPnlar~yf~~~----Gi~~v~Ii~l~GSvEl--AP~lGlAD~IVDIVsTGtT--LraN---gLk~ie 273 (349)
+|||+---.....+|++. |+ +++.....-++ +-.-|-+|+++.--.++.. ++.+ +|+++.
T Consensus 112 ---~~v~~~~g~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~l~~~~ 182 (239)
T 1lst_A 112 ---KHVGVLQGSTQEAYANDNWRTKGV---DVVAYANQDLIYSDLTAGRLDAALQDEVAASEGFLKQPAGKEYAFAG 182 (239)
T ss_dssp ---CEEEEETTSHHHHHHHHHTGGGTC---EEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHTTTSGGGTTEEECS
T ss_pred ---CEEEEEcCccHHHHHHHhcccCCC---eEEEcCCHHHHHHHHHcCCCCEEEeCcHHHHHHHHhccCCCceEEec
Confidence 588876655666666654 44 44444433332 2446889988765555432 4433 366654
No 42
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=93.24 E-value=0.47 Score=41.74 Aligned_cols=135 Identities=19% Similarity=0.146 Sum_probs=87.8
Q ss_pred CCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccCCCCCcEE
Q 018852 134 PKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRV 213 (349)
Q Consensus 134 ~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~~~~lRV 213 (349)
-.+.-..+..|.+|+.. |.-.-.|... .+.. --.|.....++.++++. ..+.+++||.+ +||
T Consensus 81 ~~~~~~~l~~G~~D~~~-~~~~t~~r~~----~~~f--s~p~~~~~~~l~~~~~~--~~i~~~~dL~g---------~~i 142 (267)
T 3mpk_A 81 VEELIAKLRSGEADMAG-ALFVNSARES----FLSF--SRPYVRNGMVIVTRQDP--DAPVDADHLDG---------RTV 142 (267)
T ss_dssp HHHHHHHHHHTSCSEEE-EEECCGGGTT----TEEE--CSCSEEECEEEEEESST--TSCSSGGGCTT---------CEE
T ss_pred HHHHHHHHHCCCccEEe-cccCChhhhc----ceEe--chhhccCceEEEEECCC--CCCCCHHHHCC---------CEE
Confidence 46777889999999953 5544444432 1211 23666777888888763 45788888774 689
Q ss_pred EcCCCccHHHHHHhcCCceEEEEecCCcccc--ccCCCcceeeeecccchhhHhh----CCcEEecCceE--EEEEEEEE
Q 018852 214 ATGFTYLGPKFMKDNGLKHVVFSTADGALEA--APAMGIADAILDLVSSGTTLRE----NNLKEIEGGVV--LESQAVLV 285 (349)
Q Consensus 214 ATkYPnlar~yf~~~Gi~~v~Ii~l~GSvEl--AP~lGlAD~IVDIVsTGtTLra----NgLk~ie~g~I--leSsA~LI 285 (349)
|+--......|+++..- .++++.....-|+ +-.-|-+|+++.-..+..-+.+ ++|+++. .+ ....-.+.
T Consensus 143 ~v~~g~~~~~~l~~~~~-~~~~~~~~~~~~~l~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~ 219 (267)
T 3mpk_A 143 ALVRNSAAIPLLQRRYP-QAKVVTADNPSEAMLMVANGQADAVVQTQISASYYVNRYFAGKLRIAS--ALDLPPAEIALA 219 (267)
T ss_dssp EEETTCTHHHHHHHHCT-TSEEEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCTTTEEEEE--ECSSCCEEEEEE
T ss_pred EEeCCchhHHHHHHhCC-CcEEEEeCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhcCCCceEEEe--ccCCCceeEEEE
Confidence 99888888889988642 2466665554443 2456889988877666654443 3577775 43 24455566
Q ss_pred eecc
Q 018852 286 ASRK 289 (349)
Q Consensus 286 aN~~ 289 (349)
+++.
T Consensus 220 ~~k~ 223 (267)
T 3mpk_A 220 TTRG 223 (267)
T ss_dssp EETT
T ss_pred EcCC
Confidence 6654
No 43
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=92.83 E-value=0.4 Score=45.61 Aligned_cols=140 Identities=11% Similarity=0.000 Sum_probs=79.0
Q ss_pred cCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcc---------------------------cEEEEEEEe
Q 018852 133 RPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYG---------------------------DCRLSLAIP 185 (349)
Q Consensus 133 R~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG---------------------------~CRLvvAvP 185 (349)
...|+...|..|.+|+|+++...+...... ..+ +.+|+|. ..++.. .+
T Consensus 79 ~~~~~~e~v~~G~id~~~~~~~~~~~~~p~-~~~---~~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~-~~ 153 (361)
T 2zzv_A 79 GTFDMFDAVKTGVLDGMNPFTLYWAGRMPV-TAF---LSSYALGLDRPDQWETWFYSLGGLDIARRAFAEQGLFYVG-PV 153 (361)
T ss_dssp CGGGHHHHHHHTSSSEEECBGGGGTTTCGG-GGG---SSCCTTSCCSHHHHHHHHHTSSHHHHHHHHHHHTTEEEEE-EE
T ss_pred CHHHHHHHHHcCceeEEEeccccccccCcH-HHH---HhcCCCCcCCHHHHHHHHHcCchHHHHHHHHHHCCcEEec-cc
Confidence 568999999999999999997655432110 000 0012211 122222 22
Q ss_pred CCC---c--cCcccchHHhhcCCccCCCCCcEEEcCCCccHHHHHHhcCCceEEEEecCCccccccCC--Ccceeeeecc
Q 018852 186 KYG---I--FENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAM--GIADAILDLV 258 (349)
Q Consensus 186 ~~~---~--~~dv~sl~dL~~~~~~~~~~~lRVATkYPnlar~yf~~~Gi~~v~Ii~l~GSvElAP~l--GlAD~IVDIV 258 (349)
.+. . -.+|++++||++ +||++- ..+..++|+..|. ..+.+ ..-|+...+ |..|+..-
T Consensus 154 ~g~~~~~~~~~pI~s~~DLkG---------~kirv~-~~~~~~~~~~lGa---~pv~~-~~~e~~~ALq~G~VDg~~~-- 217 (361)
T 2zzv_A 154 QHDLNIIHSKKPIRRFEDFKG---------VKLRVP-GGMIAEVFAAAGA---STVLL-PGGEVYPALERGVIDAADF-- 217 (361)
T ss_dssp CCCCCCEEESSCCCSGGGGTT---------CEEECC-SHHHHHHHHHTTC---EEECC-CGGGHHHHHHTTSCSEEEC--
T ss_pred CCccccceeCCCcCChHHhCC---------CEEeec-CHHHHHHHHHcCC---eeeec-ChHHHHHHHHcCCcceeec--
Confidence 211 0 157999999986 577765 4577889999996 34554 455776553 55554431
Q ss_pred cchhhH-hhCCcEEecCceEEE------------EEEEEEeecchhhhhc
Q 018852 259 SSGTTL-RENNLKEIEGGVVLE------------SQAVLVASRKSLIRRK 295 (349)
Q Consensus 259 sTGtTL-raNgLk~ie~g~Ile------------SsA~LIaN~~s~~~k~ 295 (349)
+..++ ..+++.++.. .+.. ....+++|+..|..-+
T Consensus 218 -~~~~~~~~~~~~ev~k-~~~~~~~~~~~~~~~~~~~~~vvn~~~~~~L~ 265 (361)
T 2zzv_A 218 -VGPAVNYNLGFHQVAK-YIIMGPPETPAIHQPVDLMDFTINLNRWRSLP 265 (361)
T ss_dssp -SCHHHHHHTTHHHHCS-EEEECCTTSSCSSCSSCCEEEEEEHHHHHHSC
T ss_pred -CCcchhhhcChhhhcc-eEEecCCCcccccccCcceEEEEcHHHHhcCC
Confidence 23333 4555544431 2222 2357889998776433
No 44
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=92.69 E-value=0.23 Score=42.82 Aligned_cols=123 Identities=18% Similarity=0.169 Sum_probs=78.2
Q ss_pred cCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccCCCCCcE
Q 018852 133 RPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLR 212 (349)
Q Consensus 133 R~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~~~~lR 212 (349)
...++-..+..|.+|+++.|...-.|.... +.. --.+..-..++.++.+. -.++++++||.+ +|
T Consensus 89 ~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~----~~~--s~p~~~~~~~~~~~~~~-~~~i~~~~dL~g---------~~ 152 (269)
T 4i62_A 89 SFDNVLASVQSGKADLAISGVSKTDERSKV----FDF--STPYYTAKNKLIVKKSD-LATYQSVNDLAQ---------KK 152 (269)
T ss_dssp CHHHHHHHHHTTSCSEECSSCBCCHHHHTT----EEE--CSCCEECCEEEEEEGGG-TTTCSSGGGGC----------CE
T ss_pred CHHHHHHHHhCCCccEEecCCcCCHhHhhc----eec--ccchhhcceEEEEECCc-cccccCHHHhCC---------Ce
Confidence 346677899999999999886665554321 211 13555666677777752 146788888874 68
Q ss_pred EEcCCCccHHHHHHhcCCceEEEEecCCccccc--cCCCcceeeeecccchh-hHhhC-CcEEe
Q 018852 213 VATGFTYLGPKFMKDNGLKHVVFSTADGALEAA--PAMGIADAILDLVSSGT-TLREN-NLKEI 272 (349)
Q Consensus 213 VATkYPnlar~yf~~~Gi~~v~Ii~l~GSvElA--P~lGlAD~IVDIVsTGt-TLraN-gLk~i 272 (349)
||+--......|+.+..- ..+++.....-|+. -.-|-+|+++.-..+.. .++++ ++...
T Consensus 153 i~~~~g~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~ 215 (269)
T 4i62_A 153 VGAQKGSIQETMAKDLLQ-NSSLVSLPKNGNLITDLKSGQVDAVIFEEPVAKGFVENNPDLAIA 215 (269)
T ss_dssp EEEETTSHHHHHHHHHCT-TSEEEEESCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTEEEC
T ss_pred EEEecCchHHHHHHHhCC-CCcEEecCCHHHHHHHHHcCCCCEEEeChHHHHHHHHhCCCCeEE
Confidence 998777778888887542 24666655444443 34588999876655553 44444 34443
No 45
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=92.63 E-value=0.16 Score=43.08 Aligned_cols=129 Identities=13% Similarity=0.080 Sum_probs=80.1
Q ss_pred eEEEeecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeC-CCccCcccchHHhhcCCcc
Q 018852 127 LEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPK-YGIFENINSLRELAQMPQW 205 (349)
Q Consensus 127 vev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~-~~~~~dv~sl~dL~~~~~~ 205 (349)
+++..+...+.-..+..|.+|+++.+...-.|... .+.. --+|.....++.+++ + .++++++||.+
T Consensus 49 ~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~----~~~~--s~p~~~~~~~~~~~~~~---~~i~~~~dL~g---- 115 (246)
T 4eq9_A 49 VKFEKTEWSGVFAGLDADRYNMAVNNLSYTKERAE----KYLY--AAPIAQNPNVLVVKKDD---SSIKSLDDIGG---- 115 (246)
T ss_dssp EEEEECCHHHHHHHHHTTSCSEECSSCCCCHHHHH----HEEE--CCCCEECCEEEEEETTC---CSCSSGGGCTT----
T ss_pred EEEEeCCHHHHHHHHhCCCcCEEecccccChhhhh----ceee--ccceecCceEEEEECCC---CCCCCHHHhCC----
Confidence 34444555677788999999999877555444321 1211 245556677888888 5 57888888874
Q ss_pred CCCCCcEEEcCCCccHHHHHHh----cCCceEEEEecCCccccc---cCCCcceeeeecccchhh-HhhCC---cEEec
Q 018852 206 TAEKPLRVATGFTYLGPKFMKD----NGLKHVVFSTADGALEAA---PAMGIADAILDLVSSGTT-LRENN---LKEIE 273 (349)
Q Consensus 206 ~~~~~lRVATkYPnlar~yf~~----~Gi~~v~Ii~l~GSvElA---P~lGlAD~IVDIVsTGtT-LraNg---Lk~ie 273 (349)
+|||+---.....++.+ .+...++++....+.+-+ -.-|-+|+++.-..+... +++++ |+++.
T Consensus 116 -----~~i~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~ 189 (246)
T 4eq9_A 116 -----KSTEVVQATTSAKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSDGQFDYKIFDKIGVETVIKNQGLDNLKVIE 189 (246)
T ss_dssp -----CEEEECTTCHHHHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHHTCTTEEEEE
T ss_pred -----CEEEEecCccHHHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHcCCceEEEecHHHHHHHHHhCCCCCceEec
Confidence 68888666666666665 443234666444343322 456889988776665554 34444 66554
No 46
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=92.55 E-value=0.6 Score=39.96 Aligned_cols=145 Identities=17% Similarity=0.108 Sum_probs=90.4
Q ss_pred EEeecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccCCC
Q 018852 129 VWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAE 208 (349)
Q Consensus 129 v~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~~ 208 (349)
+..+.....-..+..|.+|+.+.|.-.-.|.... +.. --+|.....++.++.+.. ..+++++||..
T Consensus 48 ~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~----~~~--s~p~~~~~~~~~~~~~~~-~~i~~~~dL~~------- 113 (245)
T 3k4u_A 48 LVPTSWDGLIPGLVTEKFDIIISGMTISQERNLR----VNF--VEPYIVVGQSLLVKKGLE-KGVKSYKDLDK------- 113 (245)
T ss_dssp EEECCGGGHHHHHHTTSCSEECSSCBCCHHHHTT----SEE--CSCSEEECEEEEEETTTT-TTCCSGGGGCC-------
T ss_pred EEEccHHHHHHHHhCCCcCEEEecCcCCHHHHhh----cCc--chhhheeceEEEEECCcc-cccCCHHHhcc-------
Confidence 3334456777889999999988776555554321 111 236667778888888632 46778888873
Q ss_pred CCcEEEcCCCccHHHHHHhcCCceEEEEecCCcccc--ccCCCcceeeeecccchhhH-hhCC---cEEecCceEEEEEE
Q 018852 209 KPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEA--APAMGIADAILDLVSSGTTL-RENN---LKEIEGGVVLESQA 282 (349)
Q Consensus 209 ~~lRVATkYPnlar~yf~~~Gi~~v~Ii~l~GSvEl--AP~lGlAD~IVDIVsTGtTL-raNg---Lk~ie~g~IleSsA 282 (349)
+++|||+---.....++.+.. ..++++.....-|+ +-.-|-+|+++.-..+...+ +.++ ++++. ..+.....
T Consensus 114 ~g~~i~v~~g~~~~~~l~~~~-~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 191 (245)
T 3k4u_A 114 PELTLVTKFGVSAEYAAKRLF-KNAKLKTYDTEAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQGYLVHLD-TSLTYEPL 191 (245)
T ss_dssp SSCEEEEETTSHHHHHHHHHC-SSSEEEEESSHHHHHHHHHSSSSEEEEEEHHHHHHHHHHTTTTTEEEEC-CCCSCEEE
T ss_pred CCcEEEEeCCcHHHHHHHhhC-CcCCEEEeCCHHHHHHHHHcCCCcEEEEcHHHHHHHHhcCCccceeecC-CCcccccE
Confidence 137899888778888888752 22466665554443 35578899877765555444 4443 55443 23444555
Q ss_pred EEEeecc
Q 018852 283 VLVASRK 289 (349)
Q Consensus 283 ~LIaN~~ 289 (349)
.+..++.
T Consensus 192 ~~~~~k~ 198 (245)
T 3k4u_A 192 GWAIKKG 198 (245)
T ss_dssp CCEECTT
T ss_pred EEEEcCC
Confidence 6666654
No 47
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=92.51 E-value=0.55 Score=43.73 Aligned_cols=129 Identities=18% Similarity=0.139 Sum_probs=75.1
Q ss_pred CchhhhcccCceeeeeecc-ceecccC-CCCccceeecC-CCCcccEEEEEEEeCCCccCcccchHHhhcCCccCCCCCc
Q 018852 135 KDIVRKLLSGDLDLGIVGL-DTVSEFG-QGNEDLIIVHD-ALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPL 211 (349)
Q Consensus 135 ~DIP~yV~~G~aDlGIvG~-DvL~E~~-~~~~~lv~~l~-dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~~~~l 211 (349)
.++-..+..|.+|+++.|. ..+.+.. .. ..++.... .-|--....++.++.+ .++++++||... .+++
T Consensus 47 ~~~i~al~~G~vDi~~~~~~~~~~~~~~~~-~~~~a~~~~~~g~~~~~~~lvv~~d---s~i~sl~DL~~~-----~kgk 117 (310)
T 3n5l_A 47 AGIIQGMRFDKVDIAWYGNKAAMEAVDRAH-GEIFAQTVAASGAPGYWSLLIANKD---SKIDSLEDMLAN-----AKSL 117 (310)
T ss_dssp HHHHHHHHTTSCSEEECCHHHHHHHHHHSC-EEEEEEEEETTCCSEEEEEEEEETT---CSCCSHHHHHHT-----GGGC
T ss_pred HHHHHHHHcCCCCEEEECcHHHHHHHHhcC-CeEEEEEeccCCCcceEEEEEEECC---CCCCCHHHHhhh-----cCCC
Confidence 5677889999999999884 3333221 11 11111100 0111123457888887 678999999321 0125
Q ss_pred EEEc-----CCCccHHHH-H-HhcCCce---EEEEecCCccc---cccCCCcceeeeecccchhhHhhC------CcEEe
Q 018852 212 RVAT-----GFTYLGPKF-M-KDNGLKH---VVFSTADGALE---AAPAMGIADAILDLVSSGTTLREN------NLKEI 272 (349)
Q Consensus 212 RVAT-----kYPnlar~y-f-~~~Gi~~---v~Ii~l~GSvE---lAP~lGlAD~IVDIVsTGtTLraN------gLk~i 272 (349)
+||. ...++..++ | ++.|++. +..+. .|+.+ .+-.-|-+|+.+.-..+-..+.++ .|+++
T Consensus 118 ~ia~~~~gs~~~~l~~~~~l~~~~Gi~~~~~~~~v~-~g~~~~~~~al~~G~vDa~~~~~~~~~~~~~~~~~~~~~lrvl 196 (310)
T 3n5l_A 118 TFGNGDPNSTSGYLVPGYYVFAKNNVDPVKAFKRTL-NSSHEVNALAVANKQVDVATFNTEGMERLELTQPEKARQLKVI 196 (310)
T ss_dssp EEEECCTTCTTTTHHHHHHTTTTTTCCHHHHSSEEE-ECCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCHHHHTTEEEE
T ss_pred EEEecCCCccHhHHHHHHHHHHHcCCChHHhccccc-cCCHHHHHHHHHcCCccEEEecchhHHHHHHhCccchhCEEEE
Confidence 7772 234566664 4 7778741 34443 45543 356678999988776666666554 57877
Q ss_pred c
Q 018852 273 E 273 (349)
Q Consensus 273 e 273 (349)
.
T Consensus 197 ~ 197 (310)
T 3n5l_A 197 W 197 (310)
T ss_dssp E
T ss_pred E
Confidence 5
No 48
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=92.39 E-value=0.16 Score=43.80 Aligned_cols=140 Identities=14% Similarity=0.101 Sum_probs=85.2
Q ss_pred EEEeecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcc--cEEEEEEEeCCCccCcccchHHhhcCCcc
Q 018852 128 EVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYG--DCRLSLAIPKYGIFENINSLRELAQMPQW 205 (349)
Q Consensus 128 ev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG--~CRLvvAvP~~~~~~dv~sl~dL~~~~~~ 205 (349)
++......+.-..+..|.+|+++.|...-.|.... .. . -+|. ....++.++++. .++++++||.+
T Consensus 73 ~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~---~~-~---~p~~~~~~~~~~~~~~~~--~~i~~~~dL~g---- 139 (268)
T 3qax_A 73 EVREFAFDALILNLKKHRIDAILAGMSITPSRQKE---IA-L---LPYYGDEVQELMVVSKRS--LETPVLPLTQY---- 139 (268)
T ss_dssp EEEECCGGGHHHHHHHTSSSEECSCCBCCHHHHTT---SE-E---EEEECCCBCEEEEEEETT--SCSCCCCGGGS----
T ss_pred EEEecCHHHHHHHHhCCCccEEeecCccCHhHhcc---ee-e---ecceecccceEEEEECCC--CCCCCHHHhCC----
Confidence 33344456778889999999999876665554321 11 1 1233 555677777762 56788888874
Q ss_pred CCCCCcEEEcCCCccHHHHHHhcCCceEEEEecCCccccc--cCCCcceeeeecccchhhHhh-CC-cEEecCceEEE-E
Q 018852 206 TAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAA--PAMGIADAILDLVSSGTTLRE-NN-LKEIEGGVVLE-S 280 (349)
Q Consensus 206 ~~~~~lRVATkYPnlar~yf~~~Gi~~v~Ii~l~GSvElA--P~lGlAD~IVDIVsTGtTLra-Ng-Lk~ie~g~Ile-S 280 (349)
+|||+---.....++.+.. .++++...+.-|+. -.-|-+|+++.-..+...+.+ ++ ++++. ..+. .
T Consensus 140 -----~~i~~~~g~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 210 (268)
T 3qax_A 140 -----SSVAVQTGTYQEHYLLSQP--GICVRSFDSTLEVIMEVRYGKSPVAVLEPSVGRVVLKDFPNLVATR--LELPPE 210 (268)
T ss_dssp -----SCEEEETTSHHHHHHHTST--TCCEEEESCHHHHHHHHHTTSSSEEEECHHHHHHHGGGCTTEEEEE--EECCGG
T ss_pred -----CEEEEecCcHHHHHHHhCC--CceEEecCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCcEEec--CccCcc
Confidence 5788777677778887742 24555555444432 456889988877666665543 32 55553 3333 2
Q ss_pred E----EEEEeecc
Q 018852 281 Q----AVLVASRK 289 (349)
Q Consensus 281 s----A~LIaN~~ 289 (349)
. ..+..++.
T Consensus 211 ~~~~~~~~~~~k~ 223 (268)
T 3qax_A 211 CWVLGCGLGVAKD 223 (268)
T ss_dssp GCBCCEEEEECTT
T ss_pred cccccEEEEEeCC
Confidence 2 45555554
No 49
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=92.17 E-value=0.19 Score=43.34 Aligned_cols=125 Identities=14% Similarity=0.025 Sum_probs=81.3
Q ss_pred eecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccCCCCC
Q 018852 131 FQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKP 210 (349)
Q Consensus 131 ~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~~~~ 210 (349)
.+.-.++-..+..|.+|+.+.|...-.|.... +.. --+|.....++.++++.. ..+++++||... .+
T Consensus 58 ~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~----~~~--s~p~~~~~~~~~~~~~~~-~~i~~~~dL~~~------~g 124 (257)
T 2q88_A 58 ISEYGAMIPGLQAGRHDAITAGLFMKPERCAA----VAY--SQPILCDAEAFALKKGNP-LGLKSYKDIADN------PD 124 (257)
T ss_dssp ECCGGGHHHHHHTTSCSEECSCCBCCHHHHTT----SEE--CSCCCEECEEEEEETTCT-TCCCBHHHHHHC------TT
T ss_pred eCCHHHHHHHHHCCCcCEEEecccCCHHHHhc----ccc--ccchhcCceEEEEECCCc-cCCCCHHHHhcc------CC
Confidence 33346677889999999998775544443311 111 235667778888888732 257899998820 12
Q ss_pred cEEEcCCCccHHHHHHhcCCceEEEEecCCccccc--cCCCcceeeeecccchhhH-hhCC
Q 018852 211 LRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAA--PAMGIADAILDLVSSGTTL-RENN 268 (349)
Q Consensus 211 lRVATkYPnlar~yf~~~Gi~~v~Ii~l~GSvElA--P~lGlAD~IVDIVsTGtTL-raNg 268 (349)
+|||+---.....+|++.|+...+++.....-++. -.-|-+|+++.-..+...+ +.++
T Consensus 125 ~~i~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~grvDa~i~~~~~~~~~~~~~~ 185 (257)
T 2q88_A 125 AKIGAPGGGTEEKLALEAGVPRDRVIVVPDGQSGLKMLQDGRIDVYSLPVLSINDLVSKAN 185 (257)
T ss_dssp CCEEECTTSHHHHHHHHTTCCGGGEEECSSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHC
T ss_pred ceEEEECCcccHHHHHhcCCCCceEEEcCCHHHHHHHHHcCCCcEEEcCHHHHHHHHHhCC
Confidence 68998877788889999887545666655444432 3458899887766666554 4444
No 50
>2nxo_A Hypothetical protein SCO4506; PFAM, DUF178, NYSGXRC, 10093F, PSI-2, structural genomics, protein structure initiative; 2.04A {Streptomyces coelicolor} SCOP: c.94.1.1
Probab=92.02 E-value=0.2 Score=45.80 Aligned_cols=159 Identities=22% Similarity=0.232 Sum_probs=81.3
Q ss_pred CeEEEeecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEE---EEEEeCCCccCcccchHHhhcC
Q 018852 126 NLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRL---SLAIPKYGIFENINSLRELAQM 202 (349)
Q Consensus 126 ~vev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRL---vvAvP~~~~~~dv~sl~dL~~~ 202 (349)
++++.+--+.++-..+..|.+|+|.+|.-...-.. .+ +..+.+...|.+.- ++.++.. + ++||+
T Consensus 34 ~~~~~~~~~~~l~~al~~G~iDia~~~~~~~~~~~---~~-~~il~~~~~~~~g~~~sv~lv~~~----~---i~DLk-- 100 (291)
T 2nxo_A 34 DFELTKDTPEKLSEQLVRGDLDIGPVTLVEFLKNA---DD-LVAFPDIAVGCDGPVMSCVIVSQV----P---LDRLD-- 100 (291)
T ss_dssp GCEEEEECHHHHHHHHHTTSCSEEEEEHHHHHHTG---GG-EEEEEEEEEEESSCCSSEEEEESS----C---TTSCS--
T ss_pred CeEEEECCHHHHHHHHHcCCCCEeehhHHHHHhCc---cc-EEEcCCccccccCCceEEEEEeCC----C---HHHhC--
Confidence 36666666788889999999999999853222111 12 22222233332211 1222322 1 24555
Q ss_pred CccCCCCCcEEEcCCCcc-----HHHHHHhc-CCceEEEEecCCccccccCCCcceeeeecccchhhHhh-----CCcEE
Q 018852 203 PQWTAEKPLRVATGFTYL-----GPKFMKDN-GLKHVVFSTADGALEAAPAMGIADAILDLVSSGTTLRE-----NNLKE 271 (349)
Q Consensus 203 ~~~~~~~~lRVATkYPnl-----ar~yf~~~-Gi~~v~Ii~l~GSvElAP~lGlAD~IVDIVsTGtTLra-----NgLk~ 271 (349)
++|||+-.... .+..+++. |++ ++++.+.-. +.. .+.-+|+.+=+-+...|+.. .|+++
T Consensus 101 -------GKkIav~~~s~t~~~ll~~ll~~~~Gl~-~~~v~~~~~-~~~-al~~vDA~~~i~d~~~~~~~~~~~~~g~~~ 170 (291)
T 2nxo_A 101 -------GARVALGSTSRTSVRLAQLLLSERFGVQ-PDYYTCPPD-LSL-MMQEADAAVLIGDAALRANMIDGPRYGLDV 170 (291)
T ss_dssp -------SSEEEEETTCSHHHHHHHHHHHHTSCCC-CEEEEECCC-SSC-C-----CCEEEHHHHHHHHHTHHHHTTCEE
T ss_pred -------CCEEEeCCCChHHHHHHHHHHHHhhCCC-CeEEEcCCC-HHH-HhhcCCEEEEeChHHhhhhHhhCCCcCcEE
Confidence 36898754333 34455565 986 577765332 222 33246665422222233221 25665
Q ss_pred ecCce-------EEEEEEEEEeecchhhhhcCchhHHHHHHHHHHH
Q 018852 272 IEGGV-------VLESQAVLVASRKSLIRRKGVLDATHEILERLEA 310 (349)
Q Consensus 272 ie~g~-------IleSsA~LIaN~~s~~~k~~~~~~i~~li~rl~~ 310 (349)
++-|+ +--..+++++++...+.++ +.+..+++.++.
T Consensus 171 ~dl~~~w~~~~g~p~~~~~~~~~~~~~~~~p---~~v~~~~~a~~~ 213 (291)
T 2nxo_A 171 HDLGALWKEWTGLPFVFAVWAARRDYAEREP---VITRKVHEAFLA 213 (291)
T ss_dssp EEHHHHHHHHHSCCEEEEEEEEEHHHHHHCH---HHHHHHHHHHHH
T ss_pred eeHHHHHHHHHCCCcceEEEEEchhhhhhCH---HHHHHHHHHHHH
Confidence 54222 1136688999988876655 456666665554
No 51
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=92.00 E-value=0.31 Score=44.66 Aligned_cols=181 Identities=13% Similarity=0.050 Sum_probs=102.4
Q ss_pred CCCCceEEEecCCCCchHHHHHHHHHCCCccCCCCCCceEEecCCCCCeEEEe-ecCCchhhhcccCceeeeeecccee-
Q 018852 79 SERDEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWF-QRPKDIVRKLLSGDLDLGIVGLDTV- 156 (349)
Q Consensus 79 ~~~~~LrIALP~KGRL~e~t~~LL~~aGi~~~~~~~R~L~~~~~~~p~vev~~-vR~~DIP~yV~~G~aDlGIvG~DvL- 156 (349)
++...||||.+ ||=-.=....++++.+.. .+. ++++.. --+.++-..+..|.+|+|+++.+..
T Consensus 2 ~~~~~irvg~~-~~~~~~~~~~~~~~~~~~-------------~g~-~v~~~~~~~~~~~~~al~~G~~D~~~~~~~~~~ 66 (283)
T 3hn0_A 2 TEDTVIKVSVL-RGPSVIAFADWLENPPII-------------DNK-KVQVKVVDSPDLAQALLIKQETDIAVLPMINAA 66 (283)
T ss_dssp --CCEEEEEEE-SSTHHHHTHHHHHSCCEE-------------TTE-EEEEEEESCHHHHHHHHHTTCCSEEEEEHHHHH
T ss_pred CCcceEEEEec-CCCcHHHHHHHHhccccc-------------cCc-cEEEEEeCCHHHHHHHHHCCCCCEEEEcHHHHH
Confidence 45568999999 786555566666654321 011 244433 3456778889999999999998753
Q ss_pred --cccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccCCCCCcEEEcCCCc-----cHHHHHHhcC
Q 018852 157 --SEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTY-----LGPKFMKDNG 229 (349)
Q Consensus 157 --~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~~~~lRVATkYPn-----lar~yf~~~G 229 (349)
..++.+ + .++.-...|.. .+..+++ |+ ++|||+-.+. +.+.++++.|
T Consensus 67 ~~~~~g~~---~-~i~~~~~~g~~--~lv~~~~-----------Lk---------GK~Iav~~~gs~~~~ll~~~L~~~G 120 (283)
T 3hn0_A 67 NLYNKGIK---I-KLAGCPIWGTL--YLVEKTP-----------LK---------EPALYVFGNGTTPDILTRYYLGRQR 120 (283)
T ss_dssp HHHHTTCS---C-EEEEEEECCCC--EEEECSS-----------CC---------SCCEECSSTTSHHHHHHHHHHHHHT
T ss_pred HHHHCCCC---e-EEEEEecccEE--EEEecCC-----------CC---------CCEEEecCCCCcHHHHHHHHHHHcC
Confidence 334432 1 11111223322 2222211 22 4789965543 4566788899
Q ss_pred CceEEEEecC-Ccccccc--CCCcceeeeecccchhhHh-hC-CcEEec-CceEE------EEEEEEEeecchhhhhcCc
Q 018852 230 LKHVVFSTAD-GALEAAP--AMGIADAILDLVSSGTTLR-EN-NLKEIE-GGVVL------ESQAVLVASRKSLIRRKGV 297 (349)
Q Consensus 230 i~~v~Ii~l~-GSvElAP--~lGlAD~IVDIVsTGtTLr-aN-gLk~ie-~g~Il------eSsA~LIaN~~s~~~k~~~ 297 (349)
+ +++++.+. ...|+.+ .-|-.|+.+-.--..+... ++ +++++- -+.+. -..+++++++...++ +
T Consensus 121 l-dv~~~~~~~~~~~~~~al~~G~vDa~~~~eP~~~~a~~~~~~~~~~~d~~~~w~~~~~~~~~~~~~~~~~~~~~-p-- 196 (283)
T 3hn0_A 121 L-DYPLNYAFNTAGEITQGILAGKVNRAVLGEPFLSIALRKDSSLRITADLNHLTDNDTLGFAQTAVVYTPTMEKY-R-- 196 (283)
T ss_dssp C-CCCEECSCCSHHHHHHHHHHTSCSEEEECTTHHHHHHHHCTTCEEEEECCCSSTTCSSCCCCEEEEECGGGGGG-H--
T ss_pred C-ceEEEEccCCHHHHHHHHHcCCCCEEEecccHHHHHHhhCCCeEEEecHHHHhccCCCCCceEEEEEchHHhhC-H--
Confidence 9 58999876 4555543 3467788775433333322 33 566542 12221 134788998887766 5
Q ss_pred hhHHHHHH
Q 018852 298 LDATHEIL 305 (349)
Q Consensus 298 ~~~i~~li 305 (349)
+.++.++
T Consensus 197 -~~v~~~~ 203 (283)
T 3hn0_A 197 -IAFEDAL 203 (283)
T ss_dssp -HHHHHHH
T ss_pred -HHHHHHH
Confidence 4667776
No 52
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=91.23 E-value=0.81 Score=43.50 Aligned_cols=141 Identities=9% Similarity=0.015 Sum_probs=76.1
Q ss_pred ecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcc--------------------------cEEEEEEEe
Q 018852 132 QRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYG--------------------------DCRLSLAIP 185 (349)
Q Consensus 132 vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG--------------------------~CRLvvAvP 185 (349)
..+.|+...|..|.+|+|+++...+...... +..+.+|+|. ..++.-..+
T Consensus 77 g~~~~~~eav~~G~iD~~~~~~~~~~~~~p~----~~~~~~lPf~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~l~~~~ 152 (365)
T 2hzl_A 77 VPGLQAADAVTEGTVECCHTVGYYYWGKDPT----FALAAAVPFSLSARGINAWHYHGGGIDLYNEFLSQHNIVAFPGGN 152 (365)
T ss_dssp SCGGGHHHHHHTTSSSEEEECGGGGTTTCTH----HHHTTCCTTCCCHHHHHHHHHHSSHHHHHHHHHGGGTEEEEEEEE
T ss_pred cCHHHHHHHHHcCccceeecchhhhcccChh----HhhhhcCCCCCCHHHHHHHHHcCChHHHHHHHHHHCCCEEEeccC
Confidence 4568999999999999999986544322100 0000012211 122222222
Q ss_pred CCC---c--cCcccchHHhhcCCccCCCCCcEEEcCCCccHHHHHHhcCCceEEEEecCCccccccCCCcceeeeecccc
Q 018852 186 KYG---I--FENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAMGIADAILDLVSS 260 (349)
Q Consensus 186 ~~~---~--~~dv~sl~dL~~~~~~~~~~~lRVATkYPnlar~yf~~~Gi~~v~Ii~l~GSvElAP~lGlAD~IVDIVsT 260 (349)
.+. . -.+|++++||++ +||.+- | +..++|+..|.. .+.+. .-|+...+ ....||-.++
T Consensus 153 ~g~~~~~~~~~pI~s~~DLkG---------~KiR~~-~-~~~~~~~~lGa~---pv~~~-~~e~y~AL--q~G~VDg~~~ 215 (365)
T 2hzl_A 153 TGVQMGGWFRREINTVADMQG---------LKMRVG-G-FAGKVMERLGVV---PQQIA-GGDIYPAL--EKGTIDATEW 215 (365)
T ss_dssp CCSBCCCEESSCCCSTGGGTT---------CEEECC-T-THHHHHHTTTCE---EECCC-TTSHHHHH--HHTSCSEECC
T ss_pred CCcccceeecCCCCChHHhCC---------CEEecC-C-cHHHHHHHcCCc---ceecC-HHHHHHHH--hCCCcceeec
Confidence 221 1 157999999986 577766 4 788899999963 34443 33666554 2333444442
Q ss_pred -hhh-HhhCCcEEecCceEEE-------EEEEEEeecchhhhh
Q 018852 261 -GTT-LRENNLKEIEGGVVLE-------SQAVLVASRKSLIRR 294 (349)
Q Consensus 261 -GtT-LraNgLk~ie~g~Ile-------SsA~LIaN~~s~~~k 294 (349)
+.+ ...+++.++.. .+.. ....+++|+..|..-
T Consensus 216 ~~p~~~~~~~~~ev~k-~~~~~~~~~~~~~~~~v~n~~~~~~L 257 (365)
T 2hzl_A 216 VGPYDDEKLGFFKVAP-YYYYPGWWEGGPTVHFMFNKSAYEGL 257 (365)
T ss_dssp SCHHHHHHHTGGGTCC-EEEECBTTCSSCEEEEEEEHHHHHHS
T ss_pred cCccchhhcChHHhhh-eeeccCccccccceEEEEcHHHHhcC
Confidence 111 12344544321 2221 234788999877643
No 53
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=91.20 E-value=0.61 Score=40.49 Aligned_cols=126 Identities=18% Similarity=0.220 Sum_probs=71.2
Q ss_pred eEEEeecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccC
Q 018852 127 LEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWT 206 (349)
Q Consensus 127 vev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~ 206 (349)
++|..+.-..+-..+..|.+|+.+.|.-.-.|.... + .+-+--|..-...+.+..+ -..+.+++||.+
T Consensus 51 ~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~eR~~~----~-~fs~p~~~~~~~~~~~~~~--~~~~~~~~dL~g----- 118 (243)
T 4gvo_A 51 FKFKTMDFSNLLVSLGAGKVDIVAHQMEKSKEREKK----F-LFNDVAYNNFPLQLTVLDS--NNSINSTKDLAG----- 118 (243)
T ss_dssp EEEEECCGGGHHHHHHTTSCSEECSCCBCCHHHHHH----S-EECSSCCEECCEEEEEETT--CCSCSSGGGGTT-----
T ss_pred EEEEECCHHHHHHHHHCCCCCEecccCCCCHHHhhh----h-hhhhhhcccccceEEEecc--ccccCchHHhcC-----
Confidence 344444446777889999999998776555554311 1 0111122222334444444 256788898874
Q ss_pred CCCCcEEEcC----CCccHHHHHHhcCCceEEEE-ecCCccccc--cCCCcceeeeecccchhh-HhhCCc
Q 018852 207 AEKPLRVATG----FTYLGPKFMKDNGLKHVVFS-TADGALEAA--PAMGIADAILDLVSSGTT-LRENNL 269 (349)
Q Consensus 207 ~~~~lRVATk----YPnlar~yf~~~Gi~~v~Ii-~l~GSvElA--P~lGlAD~IVDIVsTGtT-LraNgL 269 (349)
+||++- |....+++.++.+.. +.++ ...+.-|+. -..|-+|+++.-..+... ++.+++
T Consensus 119 ----~~v~v~~gs~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~ 184 (243)
T 4gvo_A 119 ----KRVITSATSNGALVLKKINEEQGNN-FEIAYEGQGSNDTANQLKTGRADATISTPFAVDFQNKTSAI 184 (243)
T ss_dssp ----CEEEECTTCHHHHHHHHHHHHTTSC-SEEEECCSGGGSHHHHHHHTSCSBEEECHHHHHHHHHTCSS
T ss_pred ----CeEEEecCchHHHHHHHHHHhcccc-ceeccccCChHHHHHHHHcCCccEEEccHHHHHHHHhhCCC
Confidence 578753 445566676777754 4444 334443332 334888988865555544 344454
No 54
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=91.19 E-value=0.41 Score=46.41 Aligned_cols=168 Identities=8% Similarity=0.012 Sum_probs=86.2
Q ss_pred CCchhhhcccCc----eeeeeecccee--c--cc--CCCCccceeecCCCCcccEEEEEEEeCCCccCcc-cchHHhhcC
Q 018852 134 PKDIVRKLLSGD----LDLGIVGLDTV--S--EF--GQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENI-NSLRELAQM 202 (349)
Q Consensus 134 ~~DIP~yV~~G~----aDlGIvG~DvL--~--E~--~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv-~sl~dL~~~ 202 (349)
..++...+..|. +|++++|.++. . .. +....++..+ ..+.... -.+.++++..-..+ .++++|...
T Consensus 73 ~~~~~~al~~G~~~~giD~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g--~~i~v~~~~~~~~i~~s~~~l~~~ 149 (417)
T 2g29_A 73 WGTTRDNLVLGSASGGIDGAHILTPMPYLITMGTVTDGKPTPMYIL-ARLNVNG--QGIQLGNNYKDLKVGTDAAPLKEA 149 (417)
T ss_dssp HHHHHHHHHHCGGGTSCSEEEEETHHHHHHHHCTTSSSCCCCEEEE-EECCBSC--EEEEECGGGGGGCCCSCCTTHHHH
T ss_pred HHHHHHHHHCCCCcCCcCeEeecchHHHHHHhCcccCCCCCCEEEE-EEeccCC--eEEEEecchhhccccCCHHHHHHH
Confidence 356778999999 99999976632 2 11 1111233322 2232222 23445554211134 565332210
Q ss_pred CccCCCCCcEEEcCCCc-----cHHHHHHhcCCc---eEEEEecCCcccccc--CCCcceeeeecccchhhHhhCC--cE
Q 018852 203 PQWTAEKPLRVATGFTY-----LGPKFMKDNGLK---HVVFSTADGALEAAP--AMGIADAILDLVSSGTTLRENN--LK 270 (349)
Q Consensus 203 ~~~~~~~~lRVATkYPn-----lar~yf~~~Gi~---~v~Ii~l~GSvElAP--~lGlAD~IVDIVsTGtTLraNg--Lk 270 (349)
. ..-+++|||..+|. +.+.+|++.|++ .|+++.+. .-+... .-|-.|+++----..+.+..+| -.
T Consensus 150 ~--~dLkGk~iav~~~gs~~~~~l~~~L~~~Gl~~~~dv~~v~~~-~~~~~~aL~~G~vDa~~~~eP~~~~~~~~g~~~~ 226 (417)
T 2g29_A 150 F--AKVTDPKVAMTFPGGTHDMWIRYWLAAGGMEPGKDFSTIVVP-PAQMVANVKVNAMESFCVGEPWPLQTVNQGVGYQ 226 (417)
T ss_dssp H--HTSSSCEEEESSTTSHHHHHHHHHHHHTTCCBTTTBEEEECC-GGGHHHHHHTTSCSEEEEETTHHHHHHHHTSCEE
T ss_pred H--HhcCCCEEEEeCCCCHHHHHHHHHHHHcCCCCCCceEEEECC-HHHHHHHHHcCCCCEEEeCCCHHHHHHHcCCCEE
Confidence 0 00124799988764 345678888984 57888873 334332 2477788763322333344443 22
Q ss_pred EecCceEEE--EEEEEEeecchhhhhcCchhHHHHHHHHHHH
Q 018852 271 EIEGGVVLE--SQAVLVASRKSLIRRKGVLDATHEILERLEA 310 (349)
Q Consensus 271 ~ie~g~Ile--SsA~LIaN~~s~~~k~~~~~~i~~li~rl~~ 310 (349)
+++.+.+.. ...++++++...+.++ +.++.|++.+..
T Consensus 227 ~~~~~~~~~~~p~~~l~~~~~~~~~~p---~~~~~~~~A~~~ 265 (417)
T 2g29_A 227 ALTTGQLWKDHPEKAFGMRADWVDQNP---KAAKALLMAVME 265 (417)
T ss_dssp EEEGGGTBTTCBCEEEEEEHHHHHHCH---HHHHHHHHHHHH
T ss_pred EEechhhcCCCceEEEEECHHHHHHCH---HHHHHHHHHHHH
Confidence 333223322 2367888887666555 455555554443
No 55
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=90.27 E-value=1.3 Score=41.29 Aligned_cols=88 Identities=16% Similarity=0.056 Sum_probs=56.3
Q ss_pred CcccchHHhhcCCccCCCCCcEEEcCCCccHHHHHHhcCCceEEEEecCCccccccCC--CcceeeeecccchhhHhhCC
Q 018852 191 ENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAM--GIADAILDLVSSGTTLRENN 268 (349)
Q Consensus 191 ~dv~sl~dL~~~~~~~~~~~lRVATkYPnlar~yf~~~Gi~~v~Ii~l~GSvElAP~l--GlAD~IVDIVsTGtTLraNg 268 (349)
.+|++++||++ +||.|-...+..++|+..|. ..+.+. ..|+...+ |..|+..--. .++...+
T Consensus 130 ~pI~s~~DlkG---------~KiR~~~~~~~~~~~~~lGa---~pv~m~-~~Evy~ALq~G~VDg~~~~~---~~~~~~~ 193 (316)
T 2vpn_A 130 EPITSPEDFDN---------KKIRTMTNPLLAETYKAFGA---TPTPLP-WGEVYGGLQTGIIDGQENPI---FWIESGG 193 (316)
T ss_dssp SCCCSGGGGTT---------CEEEECSCHHHHHHHHHHTC---EEEECC-GGGHHHHHHHTSCSEEEEEH---HHHHHTT
T ss_pred CCCCChHHhCC---------CEEEeCCCHHHHHHHHHcCC---eeeecC-HHHHHHHHHcCCcceeeCCH---HHHHhcC
Confidence 68999999986 56776444577899999995 445543 35777766 8877765332 3344455
Q ss_pred cEEec-----CceEEEEEEEEEeecchhhhhc
Q 018852 269 LKEIE-----GGVVLESQAVLVASRKSLIRRK 295 (349)
Q Consensus 269 Lk~ie-----~g~IleSsA~LIaN~~s~~~k~ 295 (349)
+.++. .+.. -....+++|+..|..-+
T Consensus 194 ~~ev~~y~~~~~~~-~~~~~~~~n~~~~~~L~ 224 (316)
T 2vpn_A 194 LYEVSPNLTFTSHG-WFTTAMMANQDFYEGLS 224 (316)
T ss_dssp GGGTCCEEEECCCC-EEEEEEEEEHHHHHHSC
T ss_pred HHHhhhhheecccc-ccceEEEEcHHHHhcCC
Confidence 53332 1122 24678889999886433
No 56
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=89.80 E-value=1.7 Score=38.60 Aligned_cols=169 Identities=12% Similarity=0.070 Sum_probs=89.2
Q ss_pred CCCeEEEee--cCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhc
Q 018852 124 LSNLEVWFQ--RPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQ 201 (349)
Q Consensus 124 ~p~vev~~v--R~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~ 201 (349)
.|++++.+. ...++...+.+|.+|+||+....-.. . .++. -..++..+++++++.+..+..-.+++||.+
T Consensus 118 ~P~i~i~l~~~~~~~~~~~l~~g~~Dlai~~~~~~~~-~---~~l~----~~~L~~~~~~~v~~~~hpla~~~~~~dL~~ 189 (305)
T 3fxq_A 118 FPDVTVNVRDGMYPAVSPQLRDGTLDFALTAAHKHDI-D---TDLE----AQPLYVSDVVIVGQRQHPMANATRLAELQE 189 (305)
T ss_dssp CTTCEEEEEECCTTTTHHHHHHTSSSEEEEECCGGGS-C---TTEE----EEEEEECCEEEEEETTCTTTTCCSGGGGTT
T ss_pred CCCCEEEEEECCHHHHHHHHHcCCCCEEEecCCCCCC-c---cCee----EEEeecCcEEEEEcCCCCCCCCCCHHHHhC
Confidence 355555544 56888999999999999986542210 1 1222 133567788888888754444456777765
Q ss_pred CCccCCCCCcEEEcC----CCccHHHHHHhcCCceEEEEecCCcccccc---CCCcceeeeecccchhhHhhCCcEEecC
Q 018852 202 MPQWTAEKPLRVATG----FTYLGPKFMKDNGLKHVVFSTADGALEAAP---AMGIADAILDLVSSGTTLRENNLKEIEG 274 (349)
Q Consensus 202 ~~~~~~~~~lRVATk----YPnlar~yf~~~Gi~~v~Ii~l~GSvElAP---~lGlAD~IVDIVsTGtTLraNgLk~ie~ 274 (349)
.+ -|... .-....++|.+.|+....+..-..+.++.. .-|..=+++--.---.-++..+|+.+.-
T Consensus 190 ~~--------~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~g~gia~lp~~~~~~~~~~~~L~~~~~ 261 (305)
T 3fxq_A 190 CR--------WAFSSAPRGPGAIIRNAFARYGLPEPKLGLVCESFLALPGVVAHSDLLTTMPRTLYERNAFKDQLCSIPL 261 (305)
T ss_dssp SE--------EEEECCTTSTTHHHHHHHHHTTCCCCEEEEEECCTTTHHHHHHTSSCEEEEEHHHHHSSTTGGGEEECCC
T ss_pred CC--------eEeeCCCCCHHHHHHHHHHHcCCCCCCceEEeCCHHHHHHHHHhCCEEEEeeHHHHhhhhhcCCEEEeeC
Confidence 21 22221 124557889999982123322223444331 1122112221111111245567887631
Q ss_pred -ceEEEEEEEEEeecchhhhhcCchhHHHHHHHHHHHHHh
Q 018852 275 -GVVLESQAVLVASRKSLIRRKGVLDATHEILERLEAHLR 313 (349)
Q Consensus 275 -g~IleSsA~LIaN~~s~~~k~~~~~~i~~li~rl~~vl~ 313 (349)
+......-.++.++..... ..++.+++.|+....
T Consensus 262 ~~~~~~~~~~l~~~~~~~~~-----~~~~~f~~~l~~~~~ 296 (305)
T 3fxq_A 262 QDALPNPTIYVLRRHDLPVT-----PAAAGLIRWIQHHAL 296 (305)
T ss_dssp SSCCCCCEEEEEEETTSCCC-----HHHHHHHHHHHHHCC
T ss_pred CCCCCCCceEEEEeCCCCCC-----HHHHHHHHHHHHHHh
Confidence 1233445667776654322 356777777776543
No 57
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=89.78 E-value=0.86 Score=41.04 Aligned_cols=146 Identities=12% Similarity=0.072 Sum_probs=83.1
Q ss_pred CceEEEecCCCCchHHHHHHHHHCCCccCCCCCCceEEecCCCCCeEEEee---cCCchhhhcccCceeeeeeccceec-
Q 018852 82 DEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQ---RPKDIVRKLLSGDLDLGIVGLDTVS- 157 (349)
Q Consensus 82 ~~LrIALP~KGRL~e~t~~LL~~aGi~~~~~~~R~L~~~~~~~p~vev~~v---R~~DIP~yV~~G~aDlGIvG~DvL~- 157 (349)
..|||+.+.-|--.......+.+ .+. ++ .+++++.+. -..++...|..|.+|+++++.+...
T Consensus 19 ~~i~i~~~~~~g~~~~~~~~la~-~~~------~~-------~~g~~v~v~~~~~~~~~~~~l~~g~~Dl~~~~~~~~~~ 84 (314)
T 1us5_A 19 EFITIGSGSTTGVYFPVATGIAK-LVN------DA-------NVGIRANARSTGGSVANINAINAGEFEMALAQNDIAYY 84 (314)
T ss_dssp EEEEEECCCTTSSHHHHHHHHHH-HHH------HH-------TSSEEEEEECCSCHHHHHHHHHTTSCSEEEEEHHHHHH
T ss_pred ceEEEEeCCCCchhHHHHHHHHH-HHH------hc-------CCCceEEEEecCcHHHHHHHHHcCCCcEEEEccHhHHH
Confidence 46999998556544444444444 110 00 122333333 1357889999999999999866532
Q ss_pred --ccCC--C-----CccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccCCCCCcEEEcCCC-----ccHHH
Q 018852 158 --EFGQ--G-----NEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFT-----YLGPK 223 (349)
Q Consensus 158 --E~~~--~-----~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~~~~lRVATkYP-----nlar~ 223 (349)
+... . ..++. .+. .+..-.++++++.+ .++.+++||.+ ++|+.--+ .+.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~-~v~--~~~~~~~~lvv~~~---~~i~sl~dL~g---------~~i~~~~~gs~~~~~~~~ 149 (314)
T 1us5_A 85 AYQGCCIPAFEGKPVKTIR-ALA--ALYPEVVHVVARKD---AGIRTVADLKG---------KRVVVGDVGSGTEQNARQ 149 (314)
T ss_dssp HHHTCSSTTTTTCCCTTEE-EEE--EEEEEEEEEEEETT---SSCSSGGGGTT---------SEEECCCTTCHHHHHHHH
T ss_pred HhcCCCCCCCCCCCccchh-ehh--hcCcceEEEEEECC---CCCCcHHHhCC---------CEeecCCCCchHHHHHHH
Confidence 1110 0 11221 111 23445678889887 56788999874 35655222 24567
Q ss_pred HHHhcCCc--eE-EEEecCCcccccc--CCCcceeeeec
Q 018852 224 FMKDNGLK--HV-VFSTADGALEAAP--AMGIADAILDL 257 (349)
Q Consensus 224 yf~~~Gi~--~v-~Ii~l~GSvElAP--~lGlAD~IVDI 257 (349)
++++.|++ ++ ++... |..|+.- .-|-.|+.+..
T Consensus 150 ~l~~~G~~~~~v~~~~~~-~~~~~~~al~~G~vda~~~~ 187 (314)
T 1us5_A 150 ILEAYGLTFDDLGQAIRV-SASQGIQLMQDKRADALFYT 187 (314)
T ss_dssp HHHHTTCCGGGSSEEECC-CHHHHHHHHHTTSCSEEEEE
T ss_pred HHHHcCCCHHHcCceecC-CHHHHHHHHHcCCccEEEEc
Confidence 88888985 23 34443 6666543 33667887754
No 58
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=89.03 E-value=0.55 Score=44.24 Aligned_cols=129 Identities=18% Similarity=0.186 Sum_probs=72.8
Q ss_pred CchhhhcccCceeeeeecc-ceecccC-CCCccceeec-CCCCcccEEEEEEEeCCCccCcccchHHhhcCCccCCCCCc
Q 018852 135 KDIVRKLLSGDLDLGIVGL-DTVSEFG-QGNEDLIIVH-DALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPL 211 (349)
Q Consensus 135 ~DIP~yV~~G~aDlGIvG~-DvL~E~~-~~~~~lv~~l-~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~~~~l 211 (349)
.++-..+..|.+|+++.|- ..+.+.. .+ ..++... ..-|--.-..+++|+.+ .++++++||... .+.+
T Consensus 57 ~~~i~aL~~G~vDia~~~~~~~~~~~~~~~-~~~~a~~~~~~g~~~y~~~lvv~~d---s~i~sl~DL~~~-----~kgk 127 (321)
T 3p7i_A 57 AGIIQGMRFNKVDIAWYGNLSAMEAVDRAN-GQVFAQTVAADGSPGYWSVLIVNKD---SPINNLNDLLAK-----RKDL 127 (321)
T ss_dssp HHHHHHHHTTSCSEEECCHHHHHHHHHHSC-EEEEEEEEETTCCSSBCEEEEEETT---CSCCSHHHHHHT-----GGGC
T ss_pred HHHHHHHHcCCCcEEEEChHHHHHHHHhcC-CEEEEEEeccCCCcceEEEEEEECC---CCCCCHHHHHhh-----cCCC
Confidence 4677889999999999874 4443321 11 1111110 00111112247788887 678999999211 0125
Q ss_pred EEE-----cCCCccHHHH--HHhcCCce--EEEEecCCccc---cccCCCcceeeeecccchhhHhh------CCcEEec
Q 018852 212 RVA-----TGFTYLGPKF--MKDNGLKH--VVFSTADGALE---AAPAMGIADAILDLVSSGTTLRE------NNLKEIE 273 (349)
Q Consensus 212 RVA-----TkYPnlar~y--f~~~Gi~~--v~Ii~l~GSvE---lAP~lGlAD~IVDIVsTGtTLra------NgLk~ie 273 (349)
+|| +....+..++ +++.|++. ++.+. .|+.+ .+-.-|-+|+.+.-..+-..+.+ .+|+++.
T Consensus 128 ~va~~~~gsts~~l~~~~~l~~~~Gi~~~~~~~v~-~~~~~~a~~al~~G~vDa~~~~~~~~~~~~~~~p~~~~~lrvl~ 206 (321)
T 3p7i_A 128 TFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRTV-NAGHETNALAVANKQVDVATNNTENLDKLKTSAPEKLKELKVIW 206 (321)
T ss_dssp EEEECCTTCTTTTHHHHHHTTGGGTCCGGGSSEEE-ECCHHHHHHHHHTTSSSEEEEEHHHHHTHHHHCHHHHTTEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHcCCChhHceeee-cCCHHHHHHHHHCCCceEEEechHHHHHHHHhCcchhccEEEEE
Confidence 777 2223555555 47788742 33443 34322 34567899988876666666654 4677774
No 59
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=89.02 E-value=0.49 Score=44.50 Aligned_cols=154 Identities=15% Similarity=0.138 Sum_probs=92.1
Q ss_pred CCCCceEEEecCCCCchHHHHHHHHHCCCccCCCCCCceEEecCCCCCeEEEeec---CCchhhhcccCceeeeeeccce
Q 018852 79 SERDEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQR---PKDIVRKLLSGDLDLGIVGLDT 155 (349)
Q Consensus 79 ~~~~~LrIALP~KGRL~e~t~~LL~~aGi~~~~~~~R~L~~~~~~~p~vev~~vR---~~DIP~yV~~G~aDlGIvG~Dv 155 (349)
.+...|||+.++-|--++..-..|.+. +. +.+ .. .+++++.+.. ..+....|..|.+|+|+++.++
T Consensus 29 ~~~~~i~i~~g~~gG~~~~~~~~la~~-l~------~~~-~~---~~g~~v~v~~~~g~~~~i~~l~~g~~D~~~~~~~~ 97 (327)
T 4ddd_A 29 LNREYILIGTGSMTGVYYPIGGSICRF-IA------SDY-GK---DNKIICSISSTTGSVYNLNSIRYSNMDISIVQSDL 97 (327)
T ss_dssp CCCEEEEEECCCTTSSHHHHHHHHHHH-HH------HHH-GG---GTSEEEEEECCCCHHHHHHHHHTTSCSEEEEEHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHH-HH------hcc-CC---CCCeEEEEEecCcHHHHHHHHHcCCCcEEEECcHH
Confidence 344679999988887777766666551 11 111 00 1234444433 2466678999999999999987
Q ss_pred ecccCC---------CCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccCCCCCcEEEcCCC-----ccH
Q 018852 156 VSEFGQ---------GNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFT-----YLG 221 (349)
Q Consensus 156 L~E~~~---------~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~~~~lRVATkYP-----nla 221 (349)
+..... ...++. .+. .+..-.+++.++.+ .++++++||.+ +||+..-+ ...
T Consensus 98 ~~~a~~g~~~f~~~~~~~d~~-~v~--~~~~~~~~lvv~~d---s~i~sl~DL~g---------k~v~~~~~Gs~~~~~~ 162 (327)
T 4ddd_A 98 EYYAYNGLGFYEKMLPMDNLR-MLA--SLHKEYLTIVVKKS---SNISVIDDIKG---------KRVNIGSPGTGVRVAM 162 (327)
T ss_dssp HHHHHHTCGGGTTSCCCTTEE-EEE--EEEEEEEEEEEETT---SSCCSGGGGTT---------SEEECCSTTSHHHHHH
T ss_pred HHHHHhCcCcccccCCCcchh-ehh--ccCCccEEEEEECC---CCCCCHHHhCC---------CEEecCCCCccHHHHH
Confidence 653210 012221 111 23345677888887 67889999874 46665433 245
Q ss_pred HHHHHhcCCce--EEEEecCCccccc--cCCCcceeeeecc
Q 018852 222 PKFMKDNGLKH--VVFSTADGALEAA--PAMGIADAILDLV 258 (349)
Q Consensus 222 r~yf~~~Gi~~--v~Ii~l~GSvElA--P~lGlAD~IVDIV 258 (349)
+.++++.|++. +..+.-.|..|+. -.-|-.|++++..
T Consensus 163 ~~~l~~~Gi~~~~v~~v~~~g~~~a~~aL~~G~vDa~~~~~ 203 (327)
T 4ddd_A 163 LKLLGEKGWTKKDFSVMAELKSSEQAQALCDNKIDVMVDVI 203 (327)
T ss_dssp HHHHHHHTCCGGGCSEEECCCHHHHHHHHHTTSCSBEEEEE
T ss_pred HHHHHHcCCChHhcchhhcCCHHHHHHHHHcCCCCEEEEcc
Confidence 67888889851 2234456766654 3347788887644
No 60
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=88.37 E-value=1.8 Score=40.78 Aligned_cols=88 Identities=15% Similarity=0.029 Sum_probs=55.7
Q ss_pred CcccchHHhhcCCccCCCCCcEEEcCCCccHHHHHHhcCCceEEEEecCCccccccCC--CcceeeeecccchhhHhhCC
Q 018852 191 ENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAM--GIADAILDLVSSGTTLRENN 268 (349)
Q Consensus 191 ~dv~sl~dL~~~~~~~~~~~lRVATkYPnlar~yf~~~Gi~~v~Ii~l~GSvElAP~l--GlAD~IVDIVsTGtTLraNg 268 (349)
.+|++++||++ +||.|---.+..++|+..|. ..+.+. .-|+...+ |..|+..- ...++..++
T Consensus 148 ~pI~s~~DLkG---------~KiRv~~~~~~~~~~~alGa---~pv~m~-~~Evy~ALq~G~VDg~~~---p~~~~~~~~ 211 (327)
T 2hpg_A 148 KPIRKPEDLNG---------LRIRTPGAPAWQESIRSLGA---IPVAVN-FGEIYTAVQTRAVDGAEL---TYANVYNGG 211 (327)
T ss_dssp SCCSSGGGGTT---------CEEECCSSHHHHHHHHHHTS---EEECCC-GGGHHHHHHTTSCSEEEE---CHHHHHHTT
T ss_pred CCCCCHHHHCC---------CEEEeCCCHHHHHHHHHcCC---EeeecC-HHHHHHHHHcCCeeEEEC---CHHHHHHcC
Confidence 57999999986 56666422377899999996 345543 35777654 77777664 334445556
Q ss_pred cEEec-----CceEEEEEEEEEeecchhhhhc
Q 018852 269 LKEIE-----GGVVLESQAVLVASRKSLIRRK 295 (349)
Q Consensus 269 Lk~ie-----~g~IleSsA~LIaN~~s~~~k~ 295 (349)
+.++. .+.. -+...+++|+..|..-+
T Consensus 212 ~~ev~ky~~~~~~~-~~~~~~~~n~~~~~~L~ 242 (327)
T 2hpg_A 212 LYEVLKYMSETGHF-LLINFEIVSADWFNSLP 242 (327)
T ss_dssp GGGTCCEEEEEEEE-EEEEEEEEEHHHHHHSC
T ss_pred hhhhccEEEecCcc-hhceEEEEeHHHHhcCC
Confidence 54432 1122 24567889999887543
No 61
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=88.18 E-value=2.3 Score=37.01 Aligned_cols=125 Identities=13% Similarity=0.033 Sum_probs=71.7
Q ss_pred EEeecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccCCC
Q 018852 129 VWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAE 208 (349)
Q Consensus 129 v~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~~ 208 (349)
+......++-..+..|.+|+++.|...-.|.... +.. --+|..-..++.+..+.. .++++++||.+
T Consensus 72 ~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~----~~f--s~p~~~~~~~~~~~~~~~-~~i~~~~dL~g------- 137 (259)
T 4dz1_A 72 ITEYAWDGMLGAVASGQADVAFSGISITDKRKKV----IDF--SEPYYINSFYLVSMANHK-ITLNNLNELNK------- 137 (259)
T ss_dssp EEECCHHHHHHHHHHTSSSEEEEEEECCHHHHTT----EEE--CCCSEEEEEEEEEETTSC-CCCCSGGGGGG-------
T ss_pred EEEcCHHHHHHHHhCCCCCEEEECCcCCHHHhhc----ccc--ccchhhCceEEEEEcCCC-CCCCCHHHhCC-------
Confidence 3334446677789999999998876555554321 211 235666777777766522 47888999885
Q ss_pred CCcEEEcCCCccHHHHH----HhcCCce-EEEEecCCcccc--ccCCCcceeeeecccchhhH-hhCCc
Q 018852 209 KPLRVATGFTYLGPKFM----KDNGLKH-VVFSTADGALEA--APAMGIADAILDLVSSGTTL-RENNL 269 (349)
Q Consensus 209 ~~lRVATkYPnlar~yf----~~~Gi~~-v~Ii~l~GSvEl--AP~lGlAD~IVDIVsTGtTL-raNgL 269 (349)
+|||+---.....++ .+.|+.. .+++.....-|+ +-.-|-+|+++.-..+...+ +..+.
T Consensus 138 --~~v~v~~g~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~ 204 (259)
T 4dz1_A 138 --YSIGYPRGMAYSDLIKNDLEPKGYYSLSKVKLYPTYNETMADLKNGNLDLAFIEEPVYFTFKNKKKM 204 (259)
T ss_dssp --SCEEEETTSTHHHHHHHHTGGGTSCCGGGCEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHTSCC
T ss_pred --CEEEEeCCcHHHHHHHHhcccccccccceeEecCCHHHHHHHHHcCCCCEEEecHHHHHHHhccCCC
Confidence 567765444444444 4445311 233433333332 24458889877665555444 34443
No 62
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=88.13 E-value=2.6 Score=39.57 Aligned_cols=184 Identities=15% Similarity=0.199 Sum_probs=94.6
Q ss_pred CceEEEec-CCCCchHHHHHHHHHCCCccCCCCCCceEEecCCCCCeEEEee-cCCchhhhcccCceeeeeeccceecc-
Q 018852 82 DEIRLGLP-SKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQ-RPKDIVRKLLSGDLDLGIVGLDTVSE- 158 (349)
Q Consensus 82 ~~LrIALP-~KGRL~e~t~~LL~~aGi~~~~~~~R~L~~~~~~~p~vev~~v-R~~DIP~yV~~G~aDlGIvG~DvL~E- 158 (349)
..||||.. ....+.+...++|++.||++ ++... -..+.-..++.|.+|+++.|..-.++
T Consensus 39 ~~i~IG~~~~~~~~~~~~~~~~~~~G~~V------------------e~~~f~~~~~~~~AL~~G~iD~~~~~~~~~l~~ 100 (295)
T 1p99_A 39 KKVTIGVASNDTKAWEKVKELAKKDDIDV------------------EIKHFSDYNLPNKALNDGDIDMNAFQHFAFLDQ 100 (295)
T ss_dssp -CEEEEESSSCCHHHHHHHHHHGGGTCCE------------------EEEECSSTTSHHHHHHTTSSSEEEEEEHHHHHH
T ss_pred CeEEEEEeCCcHHHHHHHHHHHHHcCCeE------------------EEEEeCChHHHHHHHHcCCCCEEccCCHHHHHH
Confidence 46999984 02223444445666656543 22211 12556778999999999876543332
Q ss_pred cC-CC-CccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccCCCCCcEEEcCCC----ccHHHHHHhcCC--
Q 018852 159 FG-QG-NEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFT----YLGPKFMKDNGL-- 230 (349)
Q Consensus 159 ~~-~~-~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~~~~lRVATkYP----nlar~yf~~~Gi-- 230 (349)
.. .. ..+++.+ |. ....|.+..-..+++++||.. +++||.--. ..+-++|++.|+
T Consensus 101 ~~~~~~g~~l~~v------~~---~~~~p~g~ys~~iksl~DL~~--------Gk~IAip~~~s~~~~~l~lL~~~Gli~ 163 (295)
T 1p99_A 101 YKKAHKGTKISAL------ST---TVLAPLGIYSDKIKDVKKVKD--------GAKVVIPNDVSNQARALKLLEAAGLIK 163 (295)
T ss_dssp HHHHCTTCCEEEE------EE---EEECCCEEECSSCSCGGGCCT--------TCEEEEECSHHHHHHHHHHHHHTTSCE
T ss_pred HHHhcCCCCEEEE------Ee---eccccceeecCCCCChHHcCC--------CCEEEecCCCcHHHHHHHHHHHCCCcc
Confidence 21 00 1233211 10 001111100146888999832 368886322 123456888887
Q ss_pred ------------------ceEEEEecCCccccccCCCcceeeeecccchhhHhhCCcEEecCceEEE------E--E-EE
Q 018852 231 ------------------KHVVFSTADGALEAAPAMGIADAILDLVSSGTTLRENNLKEIEGGVVLE------S--Q-AV 283 (349)
Q Consensus 231 ------------------~~v~Ii~l~GSvElAP~lGlAD~IVDIVsTGtTLraNgLk~ie~g~Ile------S--s-A~ 283 (349)
.+++++.+. +.++...+|-.|+++ + .+.-+.+.|+....+..+++ + . -+
T Consensus 164 l~~~~~~~~t~~dI~~np~~v~~v~~~-~~~~~~al~~VDaa~--i-~~~~a~~ag~~~~~~~i~~e~~~~~~~~~~~n~ 239 (295)
T 1p99_A 164 LKKDFGLAGTVKDITSNPKHLKITAVD-AQQTARALSDVDIAV--I-NNGVATKAGKDPKNDPIFLEKSNSDAVKPYINI 239 (295)
T ss_dssp ECTTCCTTCCGGGEEECTTCCEEEEEC-GGGTTGGGGTSSEEE--E-CHHHHHHTTCCTTTSCSEECCCSSGGGGGGEEE
T ss_pred ccCCCCCcCChhhhhcCCCceEEEEcC-HHHHHHHhhcCCEEE--E-CcHHHHHcCCCcccceEEecCCcccCCCceeEE
Confidence 247888764 345555667788877 2 34445556664321112222 1 2 24
Q ss_pred EEeecchhhhhcCchhHHHHHHHHHH
Q 018852 284 LVASRKSLIRRKGVLDATHEILERLE 309 (349)
Q Consensus 284 LIaN~~s~~~k~~~~~~i~~li~rl~ 309 (349)
+++++. ..++ +.+..|++.++
T Consensus 240 ivvr~~--~~~~---~~vk~l~~a~~ 260 (295)
T 1p99_A 240 VAVNDK--DLDN---KTYAKIVELYH 260 (295)
T ss_dssp EEEEGG--GTTC---HHHHHHHHHHH
T ss_pred EEEeCC--ccCh---HHHHHHHHHHC
Confidence 556665 2222 56777776665
No 63
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=88.05 E-value=0.95 Score=42.22 Aligned_cols=101 Identities=10% Similarity=0.030 Sum_probs=69.7
Q ss_pred ceEEEecCCCCchHHHHHHHHHCCC-ccCCCC-----CCceEEecCCCCCeEE-EeecCCchhhhcccCceeeeeeccce
Q 018852 83 EIRLGLPSKGRMAADTLDLLKDCQL-SVKQVN-----PRQYVAQIPQLSNLEV-WFQRPKDIVRKLLSGDLDLGIVGLDT 155 (349)
Q Consensus 83 ~LrIALP~KGRL~e~t~~LL~~aGi-~~~~~~-----~R~L~~~~~~~p~vev-~~vR~~DIP~yV~~G~aDlGIvG~Dv 155 (349)
-=+||+|+.+.-..-++.||+++|+ +++... .-.-+...+ .+++| .-+.+..+|+-+.+|.+|+.++-.++
T Consensus 102 Ga~IAIpnd~sn~~RaL~lL~~~GLI~Lk~~~~~~~~t~~DI~~Np--k~l~~~~el~aaql~~al~dg~vDaavin~n~ 179 (246)
T 4ef1_A 102 GSTIYVSSSVSDWPRVLTILEDAGLITLKEGVDRTTATFDDIDKNT--KKLKFNHESDPAIMTTLYDNEEGAAVLINSNF 179 (246)
T ss_dssp TCEEEEESCGGGHHHHHHHHHHTTSEEECTTCCGGGCCGGGEEEET--TCCEEEEEECGGGHHHHHHTTCSSEEEECHHH
T ss_pred CCEEEeecCCchHHHHHHHHHHCCCeeecCCCCcCcCCHhHHhcCC--CccEEeeecCHHHHHHHhccccccEEEEechH
Confidence 3579999888777889999999998 333211 111233323 36899 89999999999999999999999999
Q ss_pred ecccCCCCc-c-ceeecCCCCcccEEEEEEEeCC
Q 018852 156 VSEFGQGNE-D-LIIVHDALDYGDCRLSLAIPKY 187 (349)
Q Consensus 156 L~E~~~~~~-~-lv~~l~dLgfG~CRLvvAvP~~ 187 (349)
..+.|.+.. + ++ +++-.--.+.+.++-.++
T Consensus 180 a~~agl~p~~dal~--~E~~~~~y~n~i~vr~~~ 211 (246)
T 4ef1_A 180 AVDQGLNPKKDAIA--LEKESSPYANIIAVRKED 211 (246)
T ss_dssp HHHTTCCHHHHCSE--ECSCCGGGCEEEEEEGGG
T ss_pred HHHcCCCCccCceE--EcCCCCCeEEEEEEeccc
Confidence 999986632 2 22 234443445544444433
No 64
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=85.63 E-value=0.33 Score=45.07 Aligned_cols=196 Identities=11% Similarity=0.067 Sum_probs=111.2
Q ss_pred CCCceEEEecCCC---Cc-hHHHHHHHHHCCCccCCCCCCceEEecCCCCCeEEEeecCCchhhhcccCceeeeeeccce
Q 018852 80 ERDEIRLGLPSKG---RM-AADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDT 155 (349)
Q Consensus 80 ~~~~LrIALP~KG---RL-~e~t~~LL~~aGi~~~~~~~R~L~~~~~~~p~vev~~vR~~DIP~yV~~G~aDlGIvG~Dv 155 (349)
..+.|+||-. .. .+ .+=...+|++.|+++.. ...-...+-.-++.|.+|++..+.--
T Consensus 14 ~~~~I~Ig~~-~~te~~i~~~i~~~~Le~~G~~Ve~------------------~~~~~~~~~~AL~~G~iD~~~e~w~~ 74 (280)
T 3tmg_A 14 NLKSVKIGYV-NWGGETAATNVLKVVFEKMGYNAEI------------------FSVTTSIMYQYLASGKIDGTVSSWVP 74 (280)
T ss_dssp -CEEEEEEEC-CCHHHHHHHHHHHHHHHHTTEEEEE------------------EECCHHHHHHHHHTTSSSEEEEEEET
T ss_pred CCCCEEEEcC-CCchHHHHHHHHHHHHHHCCCceEE------------------EECCcHHHHHHHHCCCCcEEEeccCC
Confidence 3457999975 33 21 22233456777775442 11111234467889999998875211
Q ss_pred e-----cccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccCCCCCcEEEc--CCC--ccHHHHHH
Q 018852 156 V-----SEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVAT--GFT--YLGPKFMK 226 (349)
Q Consensus 156 L-----~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~~~~lRVAT--kYP--nlar~yf~ 226 (349)
. .+.-. .++ +.+...+ ...+..++||++ .+++|++||++..... ....++. .++ ....+.++
T Consensus 75 ~~~~~~~~~~~--~~l-~~l~~~~-~~~~~~l~V~~~---~~i~sisDL~~~~~~f--~~~~~g~~~G~~~~~~~~~~l~ 145 (280)
T 3tmg_A 75 TADKFYYEKLK--TKF-VDLGANY-EGTIQGFVVPSY---VPISSISELKGKGDKF--KNKMIGIDAGAGTQIVTEQALN 145 (280)
T ss_dssp TTTHHHHHHHG--GGE-EEEEEEE-EEEEEEEEEETT---SCCCBGGGGTTCGGGG--TTEEECCSTTCHHHHHHHHHHH
T ss_pred cccHHHHHHhc--CcE-EEccccC-CCceEEEEECCC---CCCCCHHHHHhhHHHc--CCeEEecCCCchhHHHHHHHHH
Confidence 1 11100 122 2222233 345789999997 5899999998642211 1123332 222 23456777
Q ss_pred hcCC-ceEEEEecCCc-----cccccCCCcceeeeecccchhhHhhCCcEEecCceE-E--EEEEEEEeecchhhhhcCc
Q 018852 227 DNGL-KHVVFSTADGA-----LEAAPAMGIADAILDLVSSGTTLRENNLKEIEGGVV-L--ESQAVLVASRKSLIRRKGV 297 (349)
Q Consensus 227 ~~Gi-~~v~Ii~l~GS-----vElAP~lGlAD~IVDIVsTGtTLraNgLk~ie~g~I-l--eSsA~LIaN~~s~~~k~~~ 297 (349)
.-|+ +.++++..+++ +..|-.-|-.| +++.=+|=-.+.+.+|++++|+.= + ..++..++|+...+..+
T Consensus 146 ~yGL~~~~~~v~~s~~~m~~~l~~A~~~g~~~-v~~~w~p~~~~~~~~l~~LeD~k~~~~p~~~~~~vvr~~~~~~~P-- 222 (280)
T 3tmg_A 146 YYGLSKEYELVPSSESVMLASLDSSIKRNEWI-LVPLWKPHWAFSRYDIKFLDDPDLIMGGIESVHTLVRLGLENDDF-- 222 (280)
T ss_dssp HTTCTTTSEEECCCHHHHHHHHHHHHHTTCCC-CEEEEESCTHHHHSCEEECBCTTCTTCSSEEEEEEEETTHHHHCH--
T ss_pred hcCCCCceEEEeCCHHHHHHHHHHHHHCCCCE-EEEEecCchhhhcCCeEEecCccccCCCcceEEEEeccchhhHCh--
Confidence 7788 44777753322 12232233332 556777777888999999987543 2 37788889988766554
Q ss_pred hhHHHHHHHHH
Q 018852 298 LDATHEILERL 308 (349)
Q Consensus 298 ~~~i~~li~rl 308 (349)
.+.++++++
T Consensus 223 --~~~~~L~~l 231 (280)
T 3tmg_A 223 --DAYYVFDHF 231 (280)
T ss_dssp --HHHHHHHHC
T ss_pred --HHHHHHHhC
Confidence 466777666
No 65
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=84.36 E-value=1.2 Score=43.75 Aligned_cols=163 Identities=12% Similarity=0.111 Sum_probs=85.7
Q ss_pred CCchhhhcccCc----eeeeeeccceecc--cC----CCCccceeecCCCCc-ccEEEEEEEeCCCccCcccc-------
Q 018852 134 PKDIVRKLLSGD----LDLGIVGLDTVSE--FG----QGNEDLIIVHDALDY-GDCRLSLAIPKYGIFENINS------- 195 (349)
Q Consensus 134 ~~DIP~yV~~G~----aDlGIvG~DvL~E--~~----~~~~~lv~~l~dLgf-G~CRLvvAvP~~~~~~dv~s------- 195 (349)
..++-..+..|. +|+|++|.++..= .+ ....++..+ ..+.- |.+ +.+.++..-..|++
T Consensus 76 ~~~~~~al~~G~~~~~~D~a~~~~~~~~~~~~g~~~~~~g~~~~~v-~~~~~~g~~---i~v~~~~~~s~i~~~~~~lk~ 151 (429)
T 2i49_A 76 WASARDNVTIGSQGGGIDGGQWQMPMPHLITEGIITNGNKVPMYVL-AQLITQGNG---IAVAPMHEGKGVNLDITKAAD 151 (429)
T ss_dssp HHHHHHHHHHTGGGTSCSEEEECTTHHHHHHTTTTTTTCCCCEEEE-EECCBCCEE---EEECGGGTTTTCSSCCGGGHH
T ss_pred HHHHHHHHHcCCCCCceeEEEeccHHHHHHHcCccccCCCCCEEEE-EEeccCCcE---EEEecchhhcccccchHHHHH
Confidence 367888999999 9999987664331 11 111233222 12222 332 33333210013433
Q ss_pred -hHHh-hcCCccCCCCCcEEEcCCCc-----cHHHHHHhcCCc---eEEEEecCCcccccc--CCCcceeeeecccchhh
Q 018852 196 -LREL-AQMPQWTAEKPLRVATGFTY-----LGPKFMKDNGLK---HVVFSTADGALEAAP--AMGIADAILDLVSSGTT 263 (349)
Q Consensus 196 -l~dL-~~~~~~~~~~~lRVATkYPn-----lar~yf~~~Gi~---~v~Ii~l~GSvElAP--~lGlAD~IVDIVsTGtT 263 (349)
++|| +. .++++|||.-+|. +.+.+|++.|++ .|+++.+. .-+... .-|-.|+++----..+.
T Consensus 152 ~i~dL~k~-----~GK~~~Iav~~~gs~~~~~l~~~L~~~Gl~p~~DV~~v~~~-~~~~~~aL~~G~iDa~~~~eP~~~~ 225 (429)
T 2i49_A 152 YIKGFNKT-----NGRKFKAAHTFPNVNQDFWIRYWFAAGGVDPDTDIDLLAVP-PAETVQGMRNGTMDAFSTGDPWPYR 225 (429)
T ss_dssp HHHTHHHH-----HSSCCEEEESSTTSHHHHHHHHHHHHTTCCTTTTSEEEECC-HHHHHHHHHHTCCCEEEEETTHHHH
T ss_pred HHHHHHHh-----CCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCCCcEEEEECC-hHHHHHHHHcCCccEEEeccchHHH
Confidence 5777 51 0123599987764 356788889984 48888773 233221 23667777533223444
Q ss_pred HhhCCc--EEecCceEEE--EEEEEEeecchhhhhcCchhHHHHHHHHHH
Q 018852 264 LRENNL--KEIEGGVVLE--SQAVLVASRKSLIRRKGVLDATHEILERLE 309 (349)
Q Consensus 264 LraNgL--k~ie~g~Ile--SsA~LIaN~~s~~~k~~~~~~i~~li~rl~ 309 (349)
+.++|. .++..+.+.. ...+|++++.....++ +.+..|++.+.
T Consensus 226 a~~~g~g~~~~~~~~~~~~~~~~vl~~~~~~~~~~P---e~v~~~~~A~~ 272 (429)
T 2i49_A 226 IVTENIGYMAGLTAQIWPYHPEEYLAIRADWVDKNP---KATKALLKGIM 272 (429)
T ss_dssp HHHTTSCEEEEEHHHHSTTCCCCEEEEEHHHHHHCH---HHHHHHHHHHH
T ss_pred HHHCCCCEEEEechHhcCCCceEEEEECHHHHHHCH---HHHHHHHHHHH
Confidence 555543 3332222222 3467888887766555 45666655444
No 66
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=83.42 E-value=3.2 Score=36.64 Aligned_cols=163 Identities=13% Similarity=0.016 Sum_probs=83.2
Q ss_pred CCeEEEee--cCCchhhhcccCceeeeeec---cceecccCCCCccceeecCCCCcccEEEEEEEeCCCccC-cccchHH
Q 018852 125 SNLEVWFQ--RPKDIVRKLLSGDLDLGIVG---LDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFE-NINSLRE 198 (349)
Q Consensus 125 p~vev~~v--R~~DIP~yV~~G~aDlGIvG---~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~-dv~sl~d 198 (349)
|++++-+. ...++...+.+|.+|+||+. .+. .. .++. -..++..+++++++.+..+. +.-+++|
T Consensus 128 P~i~i~l~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~-~~-----~~l~----~~~l~~~~~~~v~~~~~pl~~~~i~~~d 197 (310)
T 2esn_A 128 PGVRLRLVNAERKLSVEALASGRIDFALGYDEEHER-LP-----EGIQ----AHDWFADRYVVVARRDHPRLAGAPTLEG 197 (310)
T ss_dssp TTCEEEEECCSSSCCHHHHHHTSSSEEEECCSTTCC-CC-----TTEE----EEEEEEECEEEEEESSCTTCSSSCCHHH
T ss_pred CCeEEEEEeCCcccHHHHHHcCCCCEEEecCccccc-CC-----cCcc----eeeeeccceEEEEeCCCCCcCCCCCHHH
Confidence 44444433 44578889999999999986 332 11 2222 13456788888888774321 2346788
Q ss_pred hhcCCccCCCCCcEEE--cCCCccHHHHHHhcCCceEEEEecCCcccccc---CCCcceeeeecccchhhHhhCCcEEec
Q 018852 199 LAQMPQWTAEKPLRVA--TGFTYLGPKFMKDNGLKHVVFSTADGALEAAP---AMGIADAILDLVSSGTTLRENNLKEIE 273 (349)
Q Consensus 199 L~~~~~~~~~~~lRVA--TkYPnlar~yf~~~Gi~~v~Ii~l~GSvElAP---~lGlAD~IVDIVsTGtTLraNgLk~ie 273 (349)
|.+.+. +... +.+.....+||.+.|+. ..+..-..+.+..- .-|..=+|+--.....-++..+|+.+.
T Consensus 198 L~~~~~------i~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~v~~g~Gia~lp~~~~~~~~~~~~l~~~~ 270 (310)
T 2esn_A 198 YLAERH------AVVTPWNEDSGVIDRLLARSGLR-REVAVQLPTVLAALFLAGSTDFLLTAPRHAARALAEAAGLALYP 270 (310)
T ss_dssp HHTSEE------EEECTTCCSSCHHHHHHHHTTCC-CEEEEEESCHHHHHHHHHTSSCEEEEEHHHHHHHHHHHTEEEEC
T ss_pred HhcCCc------EEEeCCCCcccHHHHHHHhCCCC-eeEEEeCCCHHHHHHHHhcCCeEEEcHHHHHHHHhhcCCceEec
Confidence 775311 1111 11235677899999975 34433334444331 122221333222112224445787653
Q ss_pred C-ceEEEEEEEEEeecchhhhhcCchhHHHHHHHHHH
Q 018852 274 G-GVVLESQAVLVASRKSLIRRKGVLDATHEILERLE 309 (349)
Q Consensus 274 ~-g~IleSsA~LIaN~~s~~~k~~~~~~i~~li~rl~ 309 (349)
- .......-.++.++..... ..++.+++.++
T Consensus 271 ~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~l~ 302 (310)
T 2esn_A 271 APFDIPPYVLRLYSHVQHVGR-----DAHAWMIGQLK 302 (310)
T ss_dssp CSSCCCCEEEEEEEECC--CC-----HHHHHHHHHSC
T ss_pred CCCCCCCeeEEEEEeCcccCC-----HHHHHHHHHHH
Confidence 1 1233455667766654321 23455555443
No 67
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=82.82 E-value=1.9 Score=36.87 Aligned_cols=135 Identities=19% Similarity=0.122 Sum_probs=79.7
Q ss_pred EEEeecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccCC
Q 018852 128 EVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTA 207 (349)
Q Consensus 128 ev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~ 207 (349)
++..+.-.+.-..+..|.+|+++.|.-.-.|.... ... --.|.....++.++.+. ++||.
T Consensus 47 ~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~-~~f-----s~p~~~~~~~~~~~~~~-------~~dL~------- 106 (232)
T 3i6v_A 47 EWVKNDWDSIIPNLVSGNYDTIIAGMSITDERDEV-IDF-----TQNYIPPTASSYVATSD-------GADLS------- 106 (232)
T ss_dssp EEEECCGGGHHHHHHTTSCSEECSSCBCCHHHHTT-SEE-----EEEEECCCEEEEEESST-------TCCTT-------
T ss_pred EEEECCHHHHHHHHHCCCCCEEEeCCcCCHHHHhh-cCc-----ccccccCCeEEEEECCC-------hHHhC-------
Confidence 33444456677789999999988876655554321 111 11344455677777762 22322
Q ss_pred CCCcEEEcCCCccHHHHHHhcCCceEEEEecCCcccc--ccCCCcceeeeecccchhhHh-hC--CcEEecCceEEE-EE
Q 018852 208 EKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEA--APAMGIADAILDLVSSGTTLR-EN--NLKEIEGGVVLE-SQ 281 (349)
Q Consensus 208 ~~~lRVATkYPnlar~yf~~~Gi~~v~Ii~l~GSvEl--AP~lGlAD~IVDIVsTGtTLr-aN--gLk~ie~g~Ile-Ss 281 (349)
+ |||+---.....|+++.++ +++.....-|+ +-.-|-+|+++.-..++..+. .+ +++++. ...+. ..
T Consensus 107 --g-~igv~~g~~~~~~l~~~~~---~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 179 (232)
T 3i6v_A 107 --G-IVAAQTATIQAGYIAESGA---TLVEFATPEETIAAVRNGEADAVFADRDYLVPIVAESGGELMFVG-DDVPLGGG 179 (232)
T ss_dssp --S-EEEEETTSHHHHHHHHSSS---EEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHTTTSSEEEE-EEEECSSC
T ss_pred --C-CEEEecCchHHHHHHhcCC---eEEEeCCHHHHHHHHHcCCcCEEEEChHHHHHHHHhCCCCeEEec-CCCCCCCc
Confidence 5 8888777778889998864 55554544443 245688998887666665544 33 466664 11222 33
Q ss_pred EEEEeecc
Q 018852 282 AVLVASRK 289 (349)
Q Consensus 282 A~LIaN~~ 289 (349)
-.+..++.
T Consensus 180 ~~~~~~k~ 187 (232)
T 3i6v_A 180 VGMGLRES 187 (232)
T ss_dssp EEEEECTT
T ss_pred EEEEEeCC
Confidence 45555543
No 68
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=81.52 E-value=5.1 Score=37.78 Aligned_cols=126 Identities=12% Similarity=0.105 Sum_probs=76.3
Q ss_pred hhcccCcee---eeeeccce-eccc--CCCCccceeecCCC----CcccEEEEEEEeCCCccCcccchHHhhcCCccCCC
Q 018852 139 RKLLSGDLD---LGIVGLDT-VSEF--GQGNEDLIIVHDAL----DYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAE 208 (349)
Q Consensus 139 ~yV~~G~aD---lGIvG~Dv-L~E~--~~~~~~lv~~l~dL----gfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~~ 208 (349)
.+|..+..| |+++..+. +... +.-.++. ..|+ .+..--++++++.+ .++++++||.+... .+.
T Consensus 65 ~~v~~a~~DGytl~~~~~~~~~~~~~~~~~~yd~---~~df~pv~~~~~~~~~lvv~~d---s~~~sl~dL~~~ak-~~p 137 (312)
T 2f5x_A 65 TQVARAQPDGYSILLMHAGFSTAPSLYKNPGYEP---YTSFEPIGLVVDVPMTIIARGD---FPPNNIKELAEYVK-KNA 137 (312)
T ss_dssp HHHHTSCSSSSEEEEEETHHHHGGGTCSCCSSCT---TTSEEEEEEEEEEEEEEEECTT---CSCCSHHHHHHHHH-HHG
T ss_pred HHHHhCCCCCcEEEEecCHHHHHHHHcCCCCCCc---ccccceeeecccCcEEEEEeCC---CCCCCHHHHHHHHH-hCC
Confidence 567777777 88876552 3221 1101111 1222 14556778889888 67888999864211 112
Q ss_pred CCcEEEcCC----CccHH-HHHHhcCCceEEEEecCCccccccCC--CcceeeeecccchhhH-hhCCcEEe
Q 018852 209 KPLRVATGF----TYLGP-KFMKDNGLKHVVFSTADGALEAAPAM--GIADAILDLVSSGTTL-RENNLKEI 272 (349)
Q Consensus 209 ~~lRVATkY----Pnlar-~yf~~~Gi~~v~Ii~l~GSvElAP~l--GlAD~IVDIVsTGtTL-raNgLk~i 272 (349)
+.+++++.= .+++- .++++.|++ +..|+-.|+-|+.-.+ |-.|++++-..+-..+ ++..|+.+
T Consensus 138 ~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~-~~~Vpy~G~~~a~~aL~~G~VD~~~~~~~~~~~~i~~g~lr~L 208 (312)
T 2f5x_A 138 DKISLANAGIGAASHLCGTMLVEALGVN-LLTIPYKGTAPAMNDLLGKQVDLMCDQTTNTTQQITSGKVKAY 208 (312)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHHHHHTTSSCEEEEEHHHHHHHHHTTSSEEE
T ss_pred CceEEeCCCCCcHHHHHHHHHHHHHCCC-eEEeccCChHHHHHHHHcCCccEEEechHHHHHHHHcCCeEEE
Confidence 347888752 45554 455667986 6778888988876544 8889888766554443 44557766
No 69
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=81.51 E-value=14 Score=32.88 Aligned_cols=170 Identities=10% Similarity=-0.029 Sum_probs=87.1
Q ss_pred CCeEEEe--ecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccC-cccchHHhhc
Q 018852 125 SNLEVWF--QRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFE-NINSLRELAQ 201 (349)
Q Consensus 125 p~vev~~--vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~-dv~sl~dL~~ 201 (349)
|++++-+ ....|+...+..|.+|+||+..... . .++. ...++..++++++|.+..+. +.-+++||.+
T Consensus 132 P~v~l~l~~~~~~~~~~~l~~g~~Dl~i~~~~~~---~---~~l~----~~~l~~~~~~~v~~~~hpl~~~~i~~~dL~~ 201 (315)
T 1uth_A 132 PHIQISTLRPNAGNLKEDMESGAVDLALGLLPEL---Q---TGFF----QRRLFRHRYVCMFRKDHPSAKSPMSLKQFSE 201 (315)
T ss_dssp TTCEEEEECTTSSCHHHHHHHTSCCEEEECCTTC---C---TTEE----EEEEEEECEEEEEETTCSSCCSSCCHHHHHH
T ss_pred CCcEEEEEeCCcccHHHHHHCCCCCEEEecCCCC---C---CCce----EEEeeccceEEEEeCCCCCcCCCCCHHHHhc
Confidence 4444443 3457899999999999999864321 1 2222 13456788888888874322 2235677765
Q ss_pred CCccCCCCCcEEE--cCCCccHHHHHHhcCCceEEEEecCCcccccc---CCCcceeeeecccchhhHhhCCcEEecC-c
Q 018852 202 MPQWTAEKPLRVA--TGFTYLGPKFMKDNGLKHVVFSTADGALEAAP---AMGIADAILDLVSSGTTLRENNLKEIEG-G 275 (349)
Q Consensus 202 ~~~~~~~~~lRVA--TkYPnlar~yf~~~Gi~~v~Ii~l~GSvElAP---~lGlAD~IVDIVsTGtTLraNgLk~ie~-g 275 (349)
.+. +.+. ..+.....++|.+.|+. ..+..-..+.+... .-|..=+|+--..-..-++..+|+.+.- +
T Consensus 202 ~~~------i~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~v~~g~giailp~~~~~~~~~~~~l~~~~~~~ 274 (315)
T 1uth_A 202 LEH------VGVVALNTGHGEVDGLLERAGIK-RRMRLVVPHFIAIGPILHSTDLIATVPQRFAVRCEVPFGLTTSPHPA 274 (315)
T ss_dssp SEE------EEECCTTSGGGGHHHHHHHTTCC-CEEEEEESSSTTHHHHHHTSSCBEEEEHHHHHHHTTTTTEEEEECSS
T ss_pred CCe------EEEecCCCCCCchhHHHHhcCCC-ceEEEECCcHHHHHHHHhcCCEEEEcHHHHHHHHhhcCCceEeCCCC
Confidence 311 0111 11224567889999985 23332223333221 1122112222110111133457776631 1
Q ss_pred eEEEEEEEEEeecchhhhhcCchhHHHHHHHHHHHHHhhcC
Q 018852 276 VVLESQAVLVASRKSLIRRKGVLDATHEILERLEAHLRASG 316 (349)
Q Consensus 276 ~IleSsA~LIaN~~s~~~k~~~~~~i~~li~rl~~vl~Ar~ 316 (349)
......-.++.++..... ..++.+++.|+.....++
T Consensus 275 ~~~~~~~~l~~~~~~~~~-----~~~~~f~~~l~~~~~~~~ 310 (315)
T 1uth_A 275 KLPDIAINLFWHAKYNRD-----PGNMWLRQLFVELFSEAH 310 (315)
T ss_dssp CCCCEEEEEEEEGGGTTC-----HHHHHHHHHHHHHHCCTT
T ss_pred CCCCccEEEEECCccCCC-----hHHHHHHHHHHHHHHHhh
Confidence 223345566666554321 356778888887765544
No 70
>3tqw_A Methionine-binding protein; transport and binding proteins, transport protein; HET: MSE; 2.00A {Coxiella burnetii}
Probab=80.97 E-value=6.5 Score=36.46 Aligned_cols=97 Identities=22% Similarity=0.295 Sum_probs=65.0
Q ss_pred eEEEecCCCCchHHHHHHHHHCCC-ccCCCC----CCceEEecCCCCCeEEEeecCCchhhhcccCceeeeeeccceecc
Q 018852 84 IRLGLPSKGRMAADTLDLLKDCQL-SVKQVN----PRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSE 158 (349)
Q Consensus 84 LrIALP~KGRL~e~t~~LL~~aGi-~~~~~~----~R~L~~~~~~~p~vev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E 158 (349)
=+||+|+...-..-++.+|+++|+ +++... .-.-+.. |-.+++|.-+.+..+|+-+ +.+|+.++--++..+
T Consensus 103 a~Iaipnd~tn~~RaL~lL~~aGLI~Lk~~~~~~~T~~DI~~--Npk~l~~~e~~aaql~r~l--~dvD~avin~n~a~~ 178 (240)
T 3tqw_A 103 AKIAVPSDPSNEARALLLLEKAQLIQLKTHVTINATPMDIAS--NPKKLKIVELDAAQLSRSL--GDVDLAAINTNYAIP 178 (240)
T ss_dssp CEEEEECSHHHHHHHHHHHHHTTSCEECCC--CCCCGGGEEE--CTTCCEEEEECGGGGGGCT--TTCSEEEECHHHHGG
T ss_pred CEEEEecCccHHHHHHHHHHHCCCEEecCCCCCcCChhhhcc--CCCCcEEEEcCHHHHHHhc--cCccEEEEcchHHHH
Confidence 479999766667778999999998 333311 1122333 2246899999999999988 568999999999999
Q ss_pred cCCCC-cc-ceeecCCCCcccEEEEEEEeCC
Q 018852 159 FGQGN-ED-LIIVHDALDYGDCRLSLAIPKY 187 (349)
Q Consensus 159 ~~~~~-~~-lv~~l~dLgfG~CRLvvAvP~~ 187 (349)
.|.+. .+ ++ +++-.--.+.+ +|+.++
T Consensus 179 agl~p~~dal~--~E~~~~~y~nv-iavr~~ 206 (240)
T 3tqw_A 179 AGLSPSRDALL--TEGPNSPYANV-VAVRED 206 (240)
T ss_dssp GTCCTTTTCSE--ECCSSSSCEEE-EEEEGG
T ss_pred cCCCcccCeeE--EcCCCCCeeEE-EEEecc
Confidence 98653 23 32 23333334544 455443
No 71
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=80.92 E-value=7.7 Score=36.60 Aligned_cols=94 Identities=13% Similarity=0.147 Sum_probs=63.1
Q ss_pred cccEEEEEEEeCCCccCcccchHHhhcCCccCCCCCcEEEcCC----CccHH-HHHHhcCCceEEEEecCCccccccCC-
Q 018852 175 YGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGF----TYLGP-KFMKDNGLKHVVFSTADGALEAAPAM- 248 (349)
Q Consensus 175 fG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~~~~lRVATkY----Pnlar-~yf~~~Gi~~v~Ii~l~GSvElAP~l- 248 (349)
+..--++++++.+ .++++++||.+... .+.+.+++++.= .+++- .++++.|++ +..|+-.|+-|+...+
T Consensus 112 ~~~~~~~lvv~~d---s~~~tl~dL~~~ak-~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~-~~~Vpy~G~~~a~~al~ 186 (314)
T 2dvz_A 112 FANTANVVAVNPK---FPAKDFKGFLEELK-KNPGKYSYGSSGTCGVLHLMGESFKMATGTD-IVHVPYKGSGPAVADAV 186 (314)
T ss_dssp EEEECEEEEECTT---SSCSSHHHHHHHHH-TSTTTCEEEESCTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHHHHH
T ss_pred cccCCEEEEEeCC---CCCCCHHHHHHHHH-hCCCcEEEeCCCCCcHHHHHHHHHHHHhCCC-eEEcccCCHHHHHHHHH
Confidence 4555678889888 67788999865311 223457888863 34544 455677986 6778888988887655
Q ss_pred -CcceeeeecccchhhH-hhCCcEEec
Q 018852 249 -GIADAILDLVSSGTTL-RENNLKEIE 273 (349)
Q Consensus 249 -GlAD~IVDIVsTGtTL-raNgLk~ie 273 (349)
|-.|++++-..+-..+ ++..|+.+.
T Consensus 187 ~G~vD~~~~~~~~~~~~i~~g~lr~La 213 (314)
T 2dvz_A 187 GGQIELIFDNLPSSMPQIQAGKLRAMA 213 (314)
T ss_dssp HTSSSEEEEEHHHHHHHHHTTSSEEEE
T ss_pred cCCceEEEEcHHHHHHHHHcCCEEEEE
Confidence 8889888766554433 445577663
No 72
>4got_A Methionine-binding lipoprotein METQ; NLPA lipoprotein, PF03180 family, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.95A {Bacillus subtilis subsp}
Probab=80.89 E-value=3.8 Score=38.23 Aligned_cols=102 Identities=13% Similarity=0.070 Sum_probs=70.5
Q ss_pred ceEEEecCCCCchHHHHHHHHHCCCc-cCCC-CC----CceEEecCCCCCeEEEeecCCchhhhcccCceeeeeecccee
Q 018852 83 EIRLGLPSKGRMAADTLDLLKDCQLS-VKQV-NP----RQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTV 156 (349)
Q Consensus 83 ~LrIALP~KGRL~e~t~~LL~~aGi~-~~~~-~~----R~L~~~~~~~p~vev~~vR~~DIP~yV~~G~aDlGIvG~DvL 156 (349)
-=+||||+...=..-++.||+++|+- ++.. +. -.-+... -.+++|.-+-+.-+|+.+.++.+|+.+.--+..
T Consensus 105 Ga~IaIPnDptN~~RaL~lL~~aGLIkLk~~~~~~~~t~~DI~~N--pk~l~~~e~~aaql~r~l~d~~vD~avin~n~a 182 (249)
T 4got_A 105 GATIILTNNVAEQGRMLAMLENAGLITLDSKVETVDATLKDIKKN--PKNLEFKKVAPELTAKAYENKEGDAVFINVNYA 182 (249)
T ss_dssp TCEEEEECCGGGHHHHHHHHHHTTSCEECTTSCGGGCCGGGEEEC--TTCCEEEEECTTTHHHHHHTTCSSEEEECHHHH
T ss_pred CCEEEEecCccchHHHHHHHHHCCCEEECCCCCccccCcchhhhC--CccccceecCHhHhhhhcccccccEEEechhHH
Confidence 35899999998999999999999983 3321 11 1233432 246999999999999999999999999999999
Q ss_pred cccCCCC-ccceeecCCCCcccEEEEEEEeCC
Q 018852 157 SEFGQGN-EDLIIVHDALDYGDCRLSLAIPKY 187 (349)
Q Consensus 157 ~E~~~~~-~~lv~~l~dLgfG~CRLvvAvP~~ 187 (349)
.+.+.+. .+.+ .+++..-...--++|+.++
T Consensus 183 ~~agl~p~~dal-~~E~~~~~py~Nvivvr~~ 213 (249)
T 4got_A 183 IQNKLNPKKDAI-EVESTKNNPYANIIAVRKG 213 (249)
T ss_dssp HHTTCCHHHHCS-EECCSTTCCCCEEEEEETT
T ss_pred HHcCCChhhhhh-cccCCCCCceEEEEEEccc
Confidence 9988653 2222 1233322222335666665
No 73
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=80.10 E-value=9.9 Score=31.90 Aligned_cols=166 Identities=10% Similarity=-0.040 Sum_probs=85.7
Q ss_pred CCeEEE--eecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccC-cccchHHhhc
Q 018852 125 SNLEVW--FQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFE-NINSLRELAQ 201 (349)
Q Consensus 125 p~vev~--~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~-dv~sl~dL~~ 201 (349)
|++++. -....++-..|.+|.+|+||+.... . . .++. -..++.-++++++|.+..+. +--+++||.+
T Consensus 35 P~v~l~l~~~~~~~l~~~L~~g~iDl~i~~~~~-~--~---~~l~----~~~l~~~~~~~v~~~~hpla~~~i~l~dL~~ 104 (218)
T 2y7p_A 35 PHIQISTLRPNAGNLKEDMESGAVDLALGLLPE-L--Q---TGFF----QRRLFRHRYVCMFRKDHPSAKSPMSLKQFTE 104 (218)
T ss_dssp TTCEEEEECCCTTTHHHHHHHTSSCEEEECCTT-C--C---TTEE----EEEEEEECEEEEEETTCSSCCSSCCHHHHHH
T ss_pred CCCEEEEEeCCcccHHHHHhCCCceEEEecCCC-C--C---ccee----EEEeeeccEEEEEcCCCCCCCCCCCHHHHhh
Confidence 444444 3456799999999999999975321 1 1 1221 13467788999999875332 2235778775
Q ss_pred CCccCCCCCcEEE--cCCCccHHHHHHhcCCceEEEEecCCcccccc---CCCcceeeeecccchhhHhhCCcEEecC-c
Q 018852 202 MPQWTAEKPLRVA--TGFTYLGPKFMKDNGLKHVVFSTADGALEAAP---AMGIADAILDLVSSGTTLRENNLKEIEG-G 275 (349)
Q Consensus 202 ~~~~~~~~~lRVA--TkYPnlar~yf~~~Gi~~v~Ii~l~GSvElAP---~lGlAD~IVDIVsTGtTLraNgLk~ie~-g 275 (349)
.+. +... ..+-....++|.+.|+. ..+..-..+.++.. .-|+.=+|+.-...-.-.+..+|+.+.= .
T Consensus 105 ~~~------i~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~lv~~g~Giailp~~~~~~~~~~~~l~~~~l~~ 177 (218)
T 2y7p_A 105 LEH------VGVVALNTGHGEVDGLLERAGIK-RRMRLVVPHFIAIGPILHSTDLIATVPQRFAVRCEVPFGLTTSPHPA 177 (218)
T ss_dssp SEE------EEECCTTSGGGGHHHHHHHTTCC-CEEEEEESSSTTHHHHHHTSSCBEEEEHHHHHHHHHHHTEEEEECSS
T ss_pred CCC------EEeecCCCccCHHHHHHHhcCCc-ceEEEEcCcHHHHHHHHhCCCEEEEcHHHHHHHhhhcCCceEecCCC
Confidence 321 0010 11234567889999986 34443334444332 2222223443111111123346776530 1
Q ss_pred eEEEEEEEEEeecchhhhhcCchhHHHHHHHHHHHHH
Q 018852 276 VVLESQAVLVASRKSLIRRKGVLDATHEILERLEAHL 312 (349)
Q Consensus 276 ~IleSsA~LIaN~~s~~~k~~~~~~i~~li~rl~~vl 312 (349)
......-.++.++..... ..++.|++.+++.+
T Consensus 178 ~~~~~~~~l~~~~~~~~~-----~~~~~~~~~l~~~~ 209 (218)
T 2y7p_A 178 KLPDIAINLFWHAKYNRD-----PGNMWLRQLFVELF 209 (218)
T ss_dssp CCCCEEEEEEEEGGGTTC-----HHHHHHHHHHHHHH
T ss_pred CCCCccEEEEEccccCCC-----hHHHHHHHHHHHHH
Confidence 122345566665544321 24566666666554
No 74
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=79.97 E-value=3.3 Score=34.45 Aligned_cols=168 Identities=19% Similarity=0.187 Sum_probs=79.7
Q ss_pred CCeEEEe--ecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccC--cccchHHhh
Q 018852 125 SNLEVWF--QRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFE--NINSLRELA 200 (349)
Q Consensus 125 p~vev~~--vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~--dv~sl~dL~ 200 (349)
|++++.+ ....++...+.+|.+|+||+.... . . .++. -..++..++++++|.+..+. ..-+++||.
T Consensus 32 P~v~l~l~~~~~~~~~~~l~~g~~Dl~i~~~~~--~-~---~~l~----~~~l~~~~~~~v~~~~hpla~~~~i~~~dL~ 101 (219)
T 1i6a_A 32 PKLEMYLHEAQTHQLLAQLDSGKLDAVILALVK--E-S---EAFI----EVPLFDEPMLLAIYEDHPWANREAVPMADLA 101 (219)
T ss_dssp TTEEEEEEECCHHHHHHHHHHTSCSEEEEECCG--G-G---TTSE----EEEEEEEEEEEEEETTSGGGGCSCEEGGGGT
T ss_pred CCeEEEEEECChHHHHHHHHcCCeeEEEecCCC--C-C---CCcc----eeeeecccEEEEEcCCCccccCCccCHHHhc
Confidence 5555544 356788899999999999985432 1 1 1221 12356788999999874322 223466766
Q ss_pred cCCccCCCCCcEEEcCCCccHHHHHHhcCCceEEEEecCCcccccc---CCCcceeeeecccchhhHhhCCcEEecC-ce
Q 018852 201 QMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAP---AMGIADAILDLVSSGTTLRENNLKEIEG-GV 276 (349)
Q Consensus 201 ~~~~~~~~~~lRVATkYPnlar~yf~~~Gi~~v~Ii~l~GSvElAP---~lGlAD~IVDIVsTGtTLraNgLk~ie~-g~ 276 (349)
+.+.-.... .+.+.....++|++.|+. ..+..-..+.+..- .-|+.=+|+.-...-.-++..+|+.+.- +.
T Consensus 102 ~~~~i~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lv~~g~Gia~lp~~~~~~~~~~~~l~~~~~~~~ 176 (219)
T 1i6a_A 102 GEKLLMLED----GHCLRDQAMGFCFEAGAD-EDTHFRATSLETLRNMVAAGSGITLLPALAVPPERKRDGVVYLPAIKP 176 (219)
T ss_dssp TSEEECCTT----TTCSSCTTSSCSSCTTSE-EECTTTTSCHHHHHHHHHTTSCBEEEEGGGSCSSSEETTEEEECEESS
T ss_pred CCcEEEecC----CCcHHHHHHHHHHHCCCC-CCceEeeCCHHHHHHHHHhCCCEEEeehhhhhhhccCCcEEEEECCCC
Confidence 431100000 011223344556666763 34332233444321 1122113332211111123346765530 01
Q ss_pred EEEEEEEEEeecchhhhhcCchhHHHHHHHHHHHHH
Q 018852 277 VLESQAVLVASRKSLIRRKGVLDATHEILERLEAHL 312 (349)
Q Consensus 277 IleSsA~LIaN~~s~~~k~~~~~~i~~li~rl~~vl 312 (349)
.....-.++.++..... ..++.+++.++...
T Consensus 177 ~~~~~~~l~~~~~~~~~-----~~~~~f~~~l~~~~ 207 (219)
T 1i6a_A 177 EPRRTIGLVYRPGSPLR-----SRYEQLAEAIRARM 207 (219)
T ss_dssp CCEEEEEEEECTTCTTH-----HHHHHHHHHHHHHH
T ss_pred cceEEEEEEECCCCCCC-----HHHHHHHHHHHHHH
Confidence 22345566665543221 34566666666543
No 75
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=79.83 E-value=2.7 Score=38.33 Aligned_cols=75 Identities=15% Similarity=0.153 Sum_probs=54.1
Q ss_pred eEEEecCCCCchHHHHHHHHHCCC-ccCCCCC----CceEEecCCCCCeEEEeecCCchhhhcccCceeeeeeccceecc
Q 018852 84 IRLGLPSKGRMAADTLDLLKDCQL-SVKQVNP----RQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSE 158 (349)
Q Consensus 84 LrIALP~KGRL~e~t~~LL~~aGi-~~~~~~~----R~L~~~~~~~p~vev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E 158 (349)
=+||+|+.+.-..-++.+|+++|+ +++.... -.-+... ..+++|.-+.+.++|+-+ |.+|++++-..+..+
T Consensus 102 ~~Iaip~d~sn~~ral~lL~~aGli~l~~~~~~~~t~~dI~~n--p~~v~~~~l~~~~~~~al--~~VDaa~i~~~~a~~ 177 (241)
T 1xs5_A 102 AVIAIPNDSSNEARALRLLEAAGFIRMRAGSGLFATVEDVQQN--VRNVVLQEVESALLPRVF--DQVDGAVINGNYAIM 177 (241)
T ss_dssp CEEEEECSHHHHHHHHHHHHHTTSCEECTTCCTTCCGGGEEEC--TTCCEEEEECGGGHHHHG--GGSSEEEECHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHCCCEEecCCCCCccChhhhhcC--CCceEEEEeCHHHHHHhh--hccCEEEECcHHHHH
Confidence 389999655566677889999998 3332111 1122222 246899999999999988 689999999888888
Q ss_pred cCCC
Q 018852 159 FGQG 162 (349)
Q Consensus 159 ~~~~ 162 (349)
.+.+
T Consensus 178 agl~ 181 (241)
T 1xs5_A 178 AGLS 181 (241)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 7754
No 76
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=79.21 E-value=7.3 Score=32.75 Aligned_cols=145 Identities=12% Similarity=-0.072 Sum_probs=76.5
Q ss_pred eEEEeecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccC-cccchHHhhcCCcc
Q 018852 127 LEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFE-NINSLRELAQMPQW 205 (349)
Q Consensus 127 vev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~-dv~sl~dL~~~~~~ 205 (349)
+++......++-..+..|.+|+||+.... . ..++. -..+++.++++++|.+..+. ..-+++||.+.
T Consensus 50 l~~~~~~~~~~~~~l~~g~~Dl~i~~~~~---~---~~~~~----~~~l~~~~~~~v~~~~hpl~~~~i~~~dL~~~--- 116 (241)
T 3oxn_A 50 FNFLPLQHDRLSDQLTYEGADLAICRPTG---P---VEPLR----SEILGRVGVLCLLSKQHPLANQEMSLDDYLSH--- 116 (241)
T ss_dssp EEEEECCGGGHHHHHHTSCCSEEEECCSS---C---CTTEE----EEEEECCCEEEEEETTSGGGGSCCCHHHHHTS---
T ss_pred EEEEECCcccHHHHHHcCCCCEEEecCCC---C---Cccce----eEEeecccEEEEEeCCCCcccCCCCHHHHhcC---
Confidence 34444566788899999999999996432 1 12222 13356788899998874322 23367787753
Q ss_pred CCCCCcEEEcCC----CccHHHHHHhcCCceEEEEecCCccccc---cCCCcceeeeecccchhhHhhCCcEEecC-ceE
Q 018852 206 TAEKPLRVATGF----TYLGPKFMKDNGLKHVVFSTADGALEAA---PAMGIADAILDLVSSGTTLRENNLKEIEG-GVV 277 (349)
Q Consensus 206 ~~~~~lRVATkY----Pnlar~yf~~~Gi~~v~Ii~l~GSvElA---P~lGlAD~IVDIVsTGtTLraNgLk~ie~-g~I 277 (349)
.-|.... .....++|++. +. ..++.-..+.+.+ ..-|..=+|+--...-.-++..+|+.+.- +..
T Consensus 117 -----~~i~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~v~~g~giailp~~~~~~~~~~~~l~~~~~~~~~ 189 (241)
T 3oxn_A 117 -----PHAMIAISDGVKALIEQALIDK-PQ-RKMVLRAYHLEAALAIVDTLPIIITVPADLAYLVAERYDLVVKPLPFQF 189 (241)
T ss_dssp -----EEEECSCCHHHHHHHHHHSTTS-CC-CEEEEECSSTHHHHHHC--CCCEEEEEHHHHHHHHHHTTEEEECCSSCC
T ss_pred -----CeEEEecCCCccchhHHHHHhh-cc-ceEEEECCcHHHHHHHHhCCCeEEEcHHHHHHHhcccCCceEeCCCCCC
Confidence 1232222 23344556665 54 3444334455443 22232223332222222234588988751 123
Q ss_pred EEEEEEEEeecchh
Q 018852 278 LESQAVLVASRKSL 291 (349)
Q Consensus 278 leSsA~LIaN~~s~ 291 (349)
....-.++.++...
T Consensus 190 ~~~~~~l~~~~~~~ 203 (241)
T 3oxn_A 190 TPFDYSMIWHARCE 203 (241)
T ss_dssp CCCCEEEEEEGGGT
T ss_pred CcccEEEEEcCcCC
Confidence 34556677766553
No 77
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=77.73 E-value=16 Score=34.04 Aligned_cols=126 Identities=13% Similarity=0.071 Sum_probs=77.7
Q ss_pred hhcccCcee---eeeeccceec-cc--CCCCccceeecCCC----CcccEEEEEEEeCCCccCcccchHHhhcCCccCCC
Q 018852 139 RKLLSGDLD---LGIVGLDTVS-EF--GQGNEDLIIVHDAL----DYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAE 208 (349)
Q Consensus 139 ~yV~~G~aD---lGIvG~DvL~-E~--~~~~~~lv~~l~dL----gfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~~ 208 (349)
.+|..+..| |+++..+.+. .. +.-.++. ..|| .+..--++++++.+ .++++++||.+... .+.
T Consensus 56 ~~v~~a~~DGytl~~~~~~~~~~~~~~~~~~yd~---~~d~~pv~~~~~~~~~lvv~~~---s~~~sl~dL~~~ak-~~p 128 (301)
T 2qpq_A 56 RLVADRAPDGYSLLMVNSSFAVNPGVFRNLPFDP---KKDFAAVINVAYVPSVFVVPAG---SKYKTLGELMAAAK-QTN 128 (301)
T ss_dssp HHHHTSCSSSSEEEEEETHHHHHHHHCTTCSSCT---TTTEEEEEEEEEEEEEEEEETT---CSCCSHHHHHHHTC-SSS
T ss_pred HHHHhCCCCCcEEEEeCCHHHHHHHhccCCCCCc---hhcchhhhehhcCCeEEEEeCC---CCCCCHHHHHHHHH-hCC
Confidence 578877777 8887655322 11 1101111 1222 24556778889887 67889999865322 223
Q ss_pred CCcEEEcCC----CccHHH-HHHhcCCceEEEEecCCccccccCC--CcceeeeecccchhhH-hhCCcEEe
Q 018852 209 KPLRVATGF----TYLGPK-FMKDNGLKHVVFSTADGALEAAPAM--GIADAILDLVSSGTTL-RENNLKEI 272 (349)
Q Consensus 209 ~~lRVATkY----Pnlar~-yf~~~Gi~~v~Ii~l~GSvElAP~l--GlAD~IVDIVsTGtTL-raNgLk~i 272 (349)
+++++++.= .+++-+ ++++.|++ +..|+-.|+-|+.-.+ |-.|++++-..+-..+ ++..|+.+
T Consensus 129 ~~~~~g~~g~Gs~~hl~~~~l~~~~G~~-~~~Vpy~g~~~a~~al~~G~vD~~~~~~~~~~~~i~~g~lr~L 199 (301)
T 2qpq_A 129 TQVTYGSCGNGTPQHLAGELLNVSAKTH-MVHVPYKGCGPALNDVLGSQIGLAVVTASSAIPFIKAGKLQAL 199 (301)
T ss_dssp CCCEEEESSTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHHHHHTTSSSCEEEEHHHHHHHHHTTSEEEE
T ss_pred CceEEecCCCCcHHHHHHHHHHHHhCCC-eEEeccCChHHHHHHHHCCCccEEEEcHHHHHHHHhcCCeEEE
Confidence 457888852 456555 44567986 6778888988877544 8888888765554443 44557765
No 78
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=76.48 E-value=2.4 Score=39.40 Aligned_cols=161 Identities=11% Similarity=-0.005 Sum_probs=88.0
Q ss_pred hhhhcccCceeeeeecccee----cccCCCCccceeecCCCCcccEEEEEEEeCCCccC---cccchHHhhcCCccCCCC
Q 018852 137 IVRKLLSGDLDLGIVGLDTV----SEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFE---NINSLRELAQMPQWTAEK 209 (349)
Q Consensus 137 IP~yV~~G~aDlGIvG~DvL----~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~---dv~sl~dL~~~~~~~~~~ 209 (349)
+-.-++.|.+|++..+..-. .+...+..+++ .+...+++ -+..++||++ . +|+|++||+...... +
T Consensus 47 ~~~Al~~G~iD~~~~~w~~~~~~~~~~~~~~~~l~-~l~~~~~~-~~~~l~V~~~---~ae~~I~si~DLk~~~~~~--~ 119 (298)
T 2rin_A 47 TYTSLKNKDIDVFLGNWMPTMEADIAPYREDKSVE-TVRENLAG-AKYTLATNAK---GAELGIKDFKDIAAHKDEL--D 119 (298)
T ss_dssp HHHHHHHTSCCEEEEEEETTTHHHHHHHHTTTSEE-EEEEEEEE-EEEEEEEEHH---HHHHTCCBGGGSGGGHHHH--T
T ss_pred HHHHHHcCCcEEEhhhccCchHHHHHHHhhCCCEE-EeccCCCC-CeEEEEEchh---HHhcCCCCHHHHHHHHHHc--C
Confidence 44568899999998652111 11110012222 22233443 5678999986 4 789999987321111 1
Q ss_pred CcEEEcC--CC--ccHHHHHH--hcCCceEEEEecCCcc-----ccccCCCcceeeeecccchhhHhhCCcEEecCceE-
Q 018852 210 PLRVATG--FT--YLGPKFMK--DNGLKHVVFSTADGAL-----EAAPAMGIADAILDLVSSGTTLRENNLKEIEGGVV- 277 (349)
Q Consensus 210 ~lRVATk--YP--nlar~yf~--~~Gi~~v~Ii~l~GSv-----ElAP~lGlAD~IVDIVsTGtTLraNgLk~ie~g~I- 277 (349)
+.+++.. ++ .+..+.|+ +-|+..++++...++. ..|-.-|-.|+ +..-++=-.+.+.+|+.++|+.-
T Consensus 120 gk~~g~~~G~~~~~~~~~~l~~~~yGL~d~~~v~~~~~~~~a~~~~A~~~g~~~v-~~~w~p~~~~~~~~l~~L~d~k~~ 198 (298)
T 2rin_A 120 GKIYGIEPGNDGNRLIIDMVEKGTFDLKGFEVVESSEQGMLAQVARAEKSGDPIV-FLGWEPHPMNANFKLTYLSGGDDV 198 (298)
T ss_dssp SEEECCSTTCHHHHHHHHHHHHTGGGCTTCEEECCCHHHHHHHHHHHHHTTCCCE-EEEEESSTHHHHSCEEECBSCTTT
T ss_pred CeEECCCCChHHHHHHHHHhhhhcCCCCCceeccCCHHHHHHHHHHHHHCCCCEE-EEEeccCchhhcCCeeECCCCccc
Confidence 3455553 21 23445576 6688447888643321 11211244332 33334444577889999987532
Q ss_pred E-----EEEEEEEeecchhhhhcCchhHHHHHHHHHH
Q 018852 278 L-----ESQAVLVASRKSLIRRKGVLDATHEILERLE 309 (349)
Q Consensus 278 l-----eSsA~LIaN~~s~~~k~~~~~~i~~li~rl~ 309 (349)
+ ..+...++|+...+..+ .+.++++++.
T Consensus 199 ~~~~~~~~~~~~v~~~~~~~~~P----~v~~~L~~~~ 231 (298)
T 2rin_A 199 FGPNYGGATVHTNVRAGYTTECP----NVDKLLQNLS 231 (298)
T ss_dssp TCHHHHEEEEEEEEETTHHHHSH----HHHHHHHHCC
T ss_pred cCCCCCcceEeeeechHHHHHCh----HHHHHHHHcC
Confidence 2 37788889988665554 3566665553
No 79
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=75.27 E-value=9.5 Score=32.69 Aligned_cols=153 Identities=16% Similarity=0.086 Sum_probs=89.3
Q ss_pred CchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccCCCCCcEEE
Q 018852 135 KDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVA 214 (349)
Q Consensus 135 ~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~~~~lRVA 214 (349)
..+-..+..|.+|+.+.|.-.-.|.... +.. --+|-....++.++.+ .++++++||.+. +..+|+
T Consensus 72 ~~~~~~l~~g~~D~~~~~~~~t~eR~~~----~~f--s~py~~~~~~~~~~~~---~~i~~~~dL~g~------~~~~ig 136 (259)
T 3g3k_A 72 NGMVRELIDHKADLAVAPLAITYVREEV----IDF--SKPFMTLGISILYRKG---TPIDSADDLAKQ------TKIEYG 136 (259)
T ss_dssp CHHHHHHHTTSCSEECSSCBCCHHHHTT----EEE--CSCSEEECEEEEEESS---SSCCSHHHHHTC------SSSEEE
T ss_pred hHHHHHHhcCcccEEEeeeEecccccce----Eee--eeeeeeCCEEEEEeCC---ccccCHHHhccC------CCceEE
Confidence 5566789999999999887666665421 211 2367778888999987 568899999852 235788
Q ss_pred cCCCccHHHHHHhcCCceE-----------EEEecCCcccc--ccCCCcceeeeecccchhhHhh--CCcEEecCceEEE
Q 018852 215 TGFTYLGPKFMKDNGLKHV-----------VFSTADGALEA--APAMGIADAILDLVSSGTTLRE--NNLKEIEGGVVLE 279 (349)
Q Consensus 215 TkYPnlar~yf~~~Gi~~v-----------~Ii~l~GSvEl--AP~lGlAD~IVDIVsTGtTLra--NgLk~ie~g~Ile 279 (349)
+-....+..+|.+.++..+ .++......|+ +-.-|- |+++.-..+..-+.+ .+|+++. ..+..
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-da~i~~~~~~~~~~~~~~~l~~~~-~~~~~ 214 (259)
T 3g3k_A 137 AVEDGATMTFFKRSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSD-YAFLMESTTIEFVTQRNCNLTQIG-GLIDS 214 (259)
T ss_dssp EETTSHHHHHHHHCCSHHHHHHHHHHHHTHHHHEESSHHHHHHHHHHSS-EEEEEEHHHHHHHHHHCTTEEEES-SCSSC
T ss_pred EecCcHHHHHHhhccchhHHHHHHHHHhcCCCcccCCHHHHHHHHHhCC-eEEEechHHHHHHhcCCceEEEec-cccee
Confidence 8777788888888765321 11222222221 123466 766654444444433 4577764 23333
Q ss_pred EEEEEEeecchhhhhcCchhHHHHHHHHHH
Q 018852 280 SQAVLVASRKSLIRRKGVLDATHEILERLE 309 (349)
Q Consensus 280 SsA~LIaN~~s~~~k~~~~~~i~~li~rl~ 309 (349)
..-.+..++..- ..+.+++.+..|+
T Consensus 215 ~~~~~a~~k~~~-----l~~~in~~l~~l~ 239 (259)
T 3g3k_A 215 KGYGVGTPMGSP-----YRDKITLAILKLQ 239 (259)
T ss_dssp EEECCEEETTCT-----HHHHHHHHHHHHH
T ss_pred eeEEEEECCCCc-----cHHHHHHHHHHHH
Confidence 444455555431 1234555554444
No 80
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=74.57 E-value=12 Score=31.19 Aligned_cols=159 Identities=18% Similarity=0.182 Sum_probs=81.2
Q ss_pred eEEEeecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccC--cccchHHhhcCCc
Q 018852 127 LEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFE--NINSLRELAQMPQ 204 (349)
Q Consensus 127 vev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~--dv~sl~dL~~~~~ 204 (349)
+++......++...+.+|.+|+||+.... + . .++. . ..++..++++++|.+..+. ..-+++||.+.+.
T Consensus 61 l~~~~~~~~~~~~~l~~g~~Dl~i~~~~~--~-~---~~l~-~---~~l~~~~~~~v~~~~hpl~~~~~i~~~dl~~~~~ 130 (238)
T 2hxr_A 61 LQLQEMSQEKIEDMLCRDELDVGIAFAPV--H-S---PELE-A---IPLLTESLALVVAQHHPLAVHEQVALSRLHDEKL 130 (238)
T ss_dssp EEEEECCHHHHHHHHHTTSCSEEEEESSC--C-C---TTEE-E---EEEEEEEEEEEEETTSGGGGCSEECGGGGGGCEE
T ss_pred EEEEECCHHHHHHHHHcCCCcEEEEcCCC--C-c---ccce-e---eeeccCcEEEEEcCCCcccccCCCCHHHHhcCCe
Confidence 34444445778889999999999986432 1 1 2222 1 2357789999998874322 2235666654210
Q ss_pred cCCCCCcEEEcCC--CccHHHHHHhcCCceEEEEecCCcccccc-----CCCcceeeeecccchhhHhhCCcEEec-Cce
Q 018852 205 WTAEKPLRVATGF--TYLGPKFMKDNGLKHVVFSTADGALEAAP-----AMGIADAILDLVSSGTTLRENNLKEIE-GGV 276 (349)
Q Consensus 205 ~~~~~~lRVATkY--Pnlar~yf~~~Gi~~v~Ii~l~GSvElAP-----~lGlAD~IVDIVsTGtTLraNgLk~ie-~g~ 276 (349)
+.....+ -....++|.+.|+. ..+..-..+.+.+- -.|+ +|+.-.. .. +..+|+.+. .+.
T Consensus 131 ------i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~g~Gi--~~lp~~~--~~-~~~~l~~~~~~~~ 198 (238)
T 2hxr_A 131 ------VLLSAEFATREQIDHYCEKAGLH-PQVVIEANSISAVLELIRRTSLS--TLLPAAI--AT-QHDGLKAISLAPP 198 (238)
T ss_dssp ------EEECTTSHHHHHHHHHHHHTTCC-CEEEEEESCHHHHHHHHHHSSCB--EEEETHH--HH-HCTTEEEEEESSC
T ss_pred ------EEecCCccHHHHHHHHHHHcCCC-CCeEEEeCCHHHHHHHHHcCCcE--EEecHHH--hc-cCCCeEEEecCCC
Confidence 1111111 13356778888875 34433334555331 1233 2332110 01 345677653 012
Q ss_pred EEEEEEEEEeecchhhhhcCchhHHHHHHHHHHHHH
Q 018852 277 VLESQAVLVASRKSLIRRKGVLDATHEILERLEAHL 312 (349)
Q Consensus 277 IleSsA~LIaN~~s~~~k~~~~~~i~~li~rl~~vl 312 (349)
.....-.++.++..... ..++.+++.++...
T Consensus 199 ~~~~~~~l~~~~~~~~~-----~~~~~f~~~l~~~~ 229 (238)
T 2hxr_A 199 LLERTAVLLRRKNSWQT-----AAAKAFLHMALDKC 229 (238)
T ss_dssp SCEEEEEEEEETTSCCC-----HHHHHHHHHHHHHH
T ss_pred CeeEEEEEEEeCCCccC-----HHHHHHHHHHHHhc
Confidence 23345556665544221 34667777776654
No 81
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=73.84 E-value=6.3 Score=33.66 Aligned_cols=82 Identities=18% Similarity=0.286 Sum_probs=57.9
Q ss_pred CchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccCCCCCcEEE
Q 018852 135 KDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVA 214 (349)
Q Consensus 135 ~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~~~~lRVA 214 (349)
..+-..+..|.+|+++.|.-.-.|... .+.. --+|.....++.++.+ .++++++||.. . -....+
T Consensus 68 ~~~~~~l~~g~~D~~~~~~~~t~~R~~----~~~f--s~p~~~~~~~~~~~~~---~~i~~~~dL~~-~-----v~v~~g 132 (265)
T 2v3u_A 68 NGLVGELVFKRADIGISALTITPDREN----VVDF--TTRYMDYSVGVLLRRG---TSIQSLQDLSK-Q-----TDIPYG 132 (265)
T ss_dssp CHHHHHHHTTSCSEECSSCBCCHHHHT----TEEE--CSCSEEECEEEEEETT---CCCCSHHHHHT-C-----SSSCEE
T ss_pred chHHHHHHcCCcCeEEeeeEeehhhhc----cccc--cceeeeccEEEEEECC---CCccchhhhhh-h-----hcEEEE
Confidence 456678999999999977655555432 1211 2356677788888887 56889999872 1 125678
Q ss_pred cCCCccHHHHHHhcCCc
Q 018852 215 TGFTYLGPKFMKDNGLK 231 (349)
Q Consensus 215 TkYPnlar~yf~~~Gi~ 231 (349)
|.+.....+||++.|+.
T Consensus 133 ~~~~~~~~~~l~~~~~~ 149 (265)
T 2v3u_A 133 TVLDSAVYQHVRMKGLN 149 (265)
T ss_dssp CBTTSHHHHHHHHHHTC
T ss_pred EeccHHHHHHHHhcCCC
Confidence 88888889999988763
No 82
>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A
Probab=72.29 E-value=6.2 Score=32.46 Aligned_cols=167 Identities=10% Similarity=-0.058 Sum_probs=80.9
Q ss_pred CCeEEEeecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCc
Q 018852 125 SNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQ 204 (349)
Q Consensus 125 p~vev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~ 204 (349)
|++++.+.-... ...+.+|.+|+||+..+.- . .++. -..++.-+++++++... ....-+++||.+.
T Consensus 39 P~i~l~i~~~~~-~~~l~~g~~Dl~i~~~~~~---~---~~~~----~~~l~~~~~~~v~~p~~-~~~~~~~~~L~~~-- 104 (219)
T 3kos_A 39 PHIDLHISTHNN-RVDPAAEGLDYTIRYGGGA---W---HDTD----AQYLCSALMSPLCSPTL-ASQIQTPADILKF-- 104 (219)
T ss_dssp TTEEEEEEEECS-CCCHHHHTCSEEEEEECSC---C---TTEE----EEEEEECCEEEEBCHHH-HTTCSSGGGGGGS--
T ss_pred CCceEEEEeccC-ccccccCCccEEEEeCCCC---C---CCce----EEEecccceEEEeChHH-hhccCCHHHHhcC--
Confidence 444444432222 3467899999999865321 1 1221 12345667777776432 1223356666642
Q ss_pred cCCCCCcEEEcCCCccHHHHHHhcCCceE---EEEecCCccccc---cCCCcceeeeecccchhhHhhCCcEEecCceEE
Q 018852 205 WTAEKPLRVATGFTYLGPKFMKDNGLKHV---VFSTADGALEAA---PAMGIADAILDLVSSGTTLRENNLKEIEGGVVL 278 (349)
Q Consensus 205 ~~~~~~lRVATkYPnlar~yf~~~Gi~~v---~Ii~l~GSvElA---P~lGlAD~IVDIVsTGtTLraNgLk~ie~g~Il 278 (349)
.-|........+++|.+.+...- .+..-..+.+++ ..-|+.=+|+.-..-..-++...|..+......
T Consensus 105 ------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~Gi~~lp~~~~~~~~~~~~l~~~~~~~~~ 178 (219)
T 3kos_A 105 ------PLLRSYRRDEWALWMQTVGEAPPSPTHNVMVFDSSVTMLEAAQAGMGVAIAPVRMFTHLLSSERIVQPFLTQID 178 (219)
T ss_dssp ------CEEEESCTTHHHHHHHHTTCCCCCTTSCEEEESCHHHHHHHHHTTSCBEEEEGGGCHHHHHTTSSBCCCCCCBC
T ss_pred ------ceeccCCccCHHHHHHHcCCCCCccccceeEEccHHHHHHHHHcCCCeEeehHHhhHHHHHcCCeeccccCCcc
Confidence 12333344556778888775310 011112333322 112222234433333344555666644322333
Q ss_pred EEEEEEEeecchhhhhcCchhHHHHHHHHHHHHHhhcC
Q 018852 279 ESQAVLVASRKSLIRRKGVLDATHEILERLEAHLRASG 316 (349)
Q Consensus 279 eSsA~LIaN~~s~~~k~~~~~~i~~li~rl~~vl~Ar~ 316 (349)
...-.++.++..... ..++.|++.|+.....+.
T Consensus 179 ~~~~~l~~~~~~~~~-----~~~~~f~~~l~~~~~~~~ 211 (219)
T 3kos_A 179 LGSYWITRLQSRPET-----PAMREFSRWLTGVLHKTS 211 (219)
T ss_dssp SCEEEEEEETTSCCC-----HHHHHHHHHHHHHHHHC-
T ss_pred CCcEEEEecccccCC-----HHHHHHHHHHHHhhcccc
Confidence 345566766654322 356777877777765544
No 83
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=71.45 E-value=11 Score=32.48 Aligned_cols=81 Identities=19% Similarity=0.212 Sum_probs=53.0
Q ss_pred CchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccCCCCCcEEE
Q 018852 135 KDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVA 214 (349)
Q Consensus 135 ~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~~~~lRVA 214 (349)
..+-..+..|.+|+.+.+.-.-.|... .+.. --+|.....++.++.+ .++++++||.+. +..+|+
T Consensus 72 ~~~~~~l~~g~~D~~~~~~~~t~~R~~----~~~f--s~p~~~~~~~~~~~~~---~~i~~~~dL~g~------~~~~ig 136 (263)
T 1mqi_A 72 NGMVGELVYGKADIAIAPLTITLVREE----VIDF--SKPFMSLGISIMIKKG---TPIESAEDLSKQ------TEIAYG 136 (263)
T ss_dssp CHHHHHHHTTSCSEECSSCBCCHHHHT----TEEE--CSCSEEECEEEEEETT---CSCCSHHHHHTC------SSSEEE
T ss_pred HHHHHHHHcCCcCEEEEeeEecHHHHh----hccc--ccceecccEEEEEcCc---cccCCHHHHhcc------cCeeEE
Confidence 566778999999999877555455432 1211 2357777888899987 468899999862 123466
Q ss_pred cCCCccHHHHHHhcCC
Q 018852 215 TGFTYLGPKFMKDNGL 230 (349)
Q Consensus 215 TkYPnlar~yf~~~Gi 230 (349)
+-....+..+|.+.++
T Consensus 137 ~v~~~~~~~~~~~~~~ 152 (263)
T 1mqi_A 137 TLDSGSTKEFFRRSKI 152 (263)
T ss_dssp CBSSSHHHHHHHHCCS
T ss_pred EEeccHHHHHHHhccc
Confidence 5444556667766554
No 84
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=71.12 E-value=8.3 Score=32.28 Aligned_cols=105 Identities=17% Similarity=0.237 Sum_probs=58.2
Q ss_pred CCCeEEEee--cCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccC--cccchHHh
Q 018852 124 LSNLEVWFQ--RPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFE--NINSLREL 199 (349)
Q Consensus 124 ~p~vev~~v--R~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~--dv~sl~dL 199 (349)
.|++++.+. ...++...+.+|.+|+||+..+.... .++. -..++.-++++++|.+..+. ..-+++||
T Consensus 40 ~P~v~l~l~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~-----~~l~----~~~l~~~~~~~v~~~~hpla~~~~i~~~dL 110 (228)
T 2fyi_A 40 FPEVRLELIQGTPQEIATLLQNGEADIGIASERLSND-----PQLV----AFPWFRWHHSLLVPHDHPLTQISPLTLESI 110 (228)
T ss_dssp CTTEEEEEEECCHHHHHHHHHHTSCSEEEESSSSTTC-----TTEE----EEEEEEECEEEEEETTCGGGTSSSCCHHHH
T ss_pred CCCcEEEEEeCCHHHHHHHHHcCCccEEEEecccCCC-----CCce----EEEeeecceEEEecCCCCccccCccCHHHH
Confidence 355655544 34688899999999999985331111 1222 12356677888888774221 23457787
Q ss_pred hcCCccCCCCCcEEEcC--CCccHHHHHHhcCCceEEEEecCCcccc
Q 018852 200 AQMPQWTAEKPLRVATG--FTYLGPKFMKDNGLKHVVFSTADGALEA 244 (349)
Q Consensus 200 ~~~~~~~~~~~lRVATk--YPnlar~yf~~~Gi~~v~Ii~l~GSvEl 244 (349)
.+.+. +..... +.....++|++.|+. .++..-..+.+.
T Consensus 111 ~~~~~------i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 150 (228)
T 2fyi_A 111 AKWPL------ITYRQGITGRSRIDDAFARKGLL-ADIVLSAQDSDV 150 (228)
T ss_dssp TTSCE------EEECTTSTTHHHHHHHHHHTTCC-CCEEEEESSHHH
T ss_pred cCCCe------EEecCCccHHHHHHHHHHHcCCC-cceEEEeCCHHH
Confidence 65311 111111 223456778888875 344433445554
No 85
>3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine bingding, protein binding; 2.25A {Neisseria meningitidis}
Probab=71.00 E-value=7.8 Score=36.71 Aligned_cols=78 Identities=18% Similarity=0.231 Sum_probs=57.8
Q ss_pred eEEEecCCCCchHHHHHHHHHCCC-ccCCCC-C----CceEEecCCCCCeEEEeecCCchhhhcccCceeeeeeccceec
Q 018852 84 IRLGLPSKGRMAADTLDLLKDCQL-SVKQVN-P----RQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVS 157 (349)
Q Consensus 84 LrIALP~KGRL~e~t~~LL~~aGi-~~~~~~-~----R~L~~~~~~~p~vev~~vR~~DIP~yV~~G~aDlGIvG~DvL~ 157 (349)
=+||+|+...=..-.+.||+++|+ +++... . -.-+.. |-.+++|.-+.+..+|+-+. .+|+.++--++..
T Consensus 123 a~IAIPnDptN~~RaL~lL~~aGLIkLk~~~~~~~~T~~DI~e--Npk~lk~~eldaaql~r~l~--dvD~avIn~nya~ 198 (275)
T 3gxa_A 123 STVSAPNDPSNFARVLVMLDELGWIKLKDGINPLTASKADIAE--NLKNIKIVELEAAQLPRSRA--DVDFAVVNGNYAI 198 (275)
T ss_dssp CEEEEECSHHHHHHHHHHHHHTTSSEECTTCCGGGCCGGGEEE--CTTCCEEEEECGGGHHHHTT--TSSEEEECHHHHH
T ss_pred CEEEecCCccHHHHHHHHHHHCCCEEecCCCCCCcCCHHHHhc--CCCCCEEEEeCHHHHhhhcc--ccCEEEEchhHHH
Confidence 489999877777888999999998 333311 1 122333 23468999999999999885 5899999999999
Q ss_pred ccCCCCcc
Q 018852 158 EFGQGNED 165 (349)
Q Consensus 158 E~~~~~~~ 165 (349)
+.|.+..+
T Consensus 199 ~agl~~~d 206 (275)
T 3gxa_A 199 SSGMKLTE 206 (275)
T ss_dssp HTTCCGGG
T ss_pred HcCCCccc
Confidence 98866433
No 86
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=70.67 E-value=0.5 Score=43.13 Aligned_cols=187 Identities=17% Similarity=0.199 Sum_probs=99.2
Q ss_pred CchhhhcccCceeeee--eccc---eecccCC---CC--------------ccceeecCCCCcccEEEEEEEeCCCccC-
Q 018852 135 KDIVRKLLSGDLDLGI--VGLD---TVSEFGQ---GN--------------EDLIIVHDALDYGDCRLSLAIPKYGIFE- 191 (349)
Q Consensus 135 ~DIP~yV~~G~aDlGI--vG~D---vL~E~~~---~~--------------~~lv~~l~dLgfG~CRLvvAvP~~~~~~- 191 (349)
..+-.-++.|.+|+++ ||.- |+-+... +. .++ ..+..++++ -...++||++..-.
T Consensus 46 ~~~~~al~~G~iD~~~eytGt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~~~~-~~~~l~V~~~~a~~~ 123 (275)
T 1sw5_A 46 LVNYEALKRNDIQLYVEYTGTAYNVILRKQPPELWDQQYIFDEVKKGLLEADGV-VVAAKLGFR-DDYALAVRADWAEEN 123 (275)
T ss_dssp HHHHHHHHHTSSSEEEEEHHHHHHTTSCCCCCSSCCHHHHHHHHHHHHHHHHCC-EEEEEEEEE-CCEEEEEEHHHHHHH
T ss_pred HHHHHHHHcCCCcEEEeehhhHHHHhcCCCCccCCCHHHHHHHHHHHhhhcCCe-EEeccCCCC-CeeEEEEeHHHHHHc
Confidence 3455678999999987 3522 2222100 00 022 233344554 34678889862000
Q ss_pred cccchHHhhcCCccCCCCCcEEEcCCCccH-----HHHHHhcCCceEEEEecCCcc-ccccCCCcceeeeecccchhhHh
Q 018852 192 NINSLRELAQMPQWTAEKPLRVATGFTYLG-----PKFMKDNGLKHVVFSTADGAL-EAAPAMGIADAILDLVSSGTTLR 265 (349)
Q Consensus 192 dv~sl~dL~~~~~~~~~~~lRVATkYPnla-----r~yf~~~Gi~~v~Ii~l~GSv-ElAP~lGlAD~IVDIVsTGtTLr 265 (349)
+|+|++||++.. ..+++++..--.. ..+++..|++--++..+..+. ..|-.-|-.|++. +-++=..+.
T Consensus 124 ~i~si~DL~g~~-----~~~~~g~~~~~~~~~~g~~~~~~~yGl~~~~~~~~~~~~~~~Al~~g~vd~~~-~~~p~~~~~ 197 (275)
T 1sw5_A 124 GVEKISDLAEFA-----DQLVFGSDPEFASRPDGLPQIKKVYGFEFKEVKQMEPTLMYEAIKNKQVDVIP-AYTTDSRVD 197 (275)
T ss_dssp TCCBGGGGTTTG-----GGCEEEECHHHHHSTTSHHHHHHHHTCCCSEEEECCGGGHHHHHHTTSCSEEE-EETTCHHHH
T ss_pred CCCcHHHHHhhh-----cceEeccCcccccccchHHHHHHhcCCCcccccCCCHHHHHHHHHcCCCeEEE-EeCCCcchh
Confidence 899999998631 1246666532222 226666788521555554331 2222235555554 334444578
Q ss_pred hCCcEEecCce-EEE-EEEEEEeecchhhhhcCchhHHHHHHHHHHHHHhhcCeeEEEEec--CCCCHHHHHH
Q 018852 266 ENNLKEIEGGV-VLE-SQAVLVASRKSLIRRKGVLDATHEILERLEAHLRASGQFTVTANM--RGNSAEEVAE 334 (349)
Q Consensus 266 aNgLk~ie~g~-Ile-SsA~LIaN~~s~~~k~~~~~~i~~li~rl~~vl~Ar~~~~v~~N~--p~~~l~~v~~ 334 (349)
+.+|++++++. ++. ...+.++++...+. + .+.+++.++.+.+......-+++.+ .+...++|++
T Consensus 198 ~~~l~~L~d~~~~~~~~~~~~v~~~~~~~~-P----~~~~~l~~l~~~l~~~~~~~l~~~v~~~~~~~~~vA~ 265 (275)
T 1sw5_A 198 LFNLKILEDDKGALPPYDAIIIVNGNTAKD-E----KLISVLKLLEDRIDTDTMRALNYQYDVEKKDAREIAM 265 (275)
T ss_dssp HTTEEECBCTTCCSCCCEEEEEECTTGGGC-H----HHHHHHHTTTTCCCHHHHHHHHHHHHTSCCCHHHHHH
T ss_pred cCCeEEccCCcccCCccceeeeeehhhccC-h----HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCHHHHHH
Confidence 89999998732 322 46677888776544 4 3456776666444333332233323 2456666654
No 87
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=70.52 E-value=5.2 Score=34.82 Aligned_cols=160 Identities=14% Similarity=0.127 Sum_probs=84.8
Q ss_pred CCeEEEee--cCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccC--cccchHHhh
Q 018852 125 SNLEVWFQ--RPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFE--NINSLRELA 200 (349)
Q Consensus 125 p~vev~~v--R~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~--dv~sl~dL~ 200 (349)
|++++.+. ...++...+.+|.+|+||+..+. + . .++. ...++..++++++|.+..+. +.-+++||.
T Consensus 118 P~i~l~~~~~~~~~~~~~l~~g~~Dl~i~~~~~--~-~---~~l~----~~~l~~~~~~~v~~~~~pl~~~~~~~~~dL~ 187 (294)
T 1ixc_A 118 PTATVSLTHMTKDEQVEGLLAGTIHVGFSRFFP--R-H---PGIE----IVNIAQEDLYLAVHRSQSGKFGKTCKLADLR 187 (294)
T ss_dssp TTEEEEEEECCHHHHHHHHHHTSCSEEEESCCC--C-C---TTEE----EEEEEEEEEEEEEEGGGGGGTCSEECGGGGT
T ss_pred CCcEEEEEeCCHHHHHHHHHCCCccEEEEecCC--C-C---CCce----EEEEeeccEEEEEeCCCccccCCccCHHHHc
Confidence 45554443 34588899999999999986542 1 1 2222 13457788999988763221 233566765
Q ss_pred cCCccCCCCCcEEEcC------CCccHHHHHHhcCCceEEEEecCCcccccc---CCCcceeeeecccchhhHhhCCcEE
Q 018852 201 QMPQWTAEKPLRVATG------FTYLGPKFMKDNGLKHVVFSTADGALEAAP---AMGIADAILDLVSSGTTLRENNLKE 271 (349)
Q Consensus 201 ~~~~~~~~~~lRVATk------YPnlar~yf~~~Gi~~v~Ii~l~GSvElAP---~lGlAD~IVDIVsTGtTLraNgLk~ 271 (349)
+. .-|... +.....++|.+.|+. ..++.-..+.+.+- .-|..=+|+--.. ..+...+|+.
T Consensus 188 ~~--------~~i~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~v~~g~Gia~lp~~~--~~~~~~~l~~ 256 (294)
T 1ixc_A 188 AV--------ELTLFPRGGRPSFADEVIGLFKHAGIE-PRIARVVEDATAALALTMAGAASSIVPASV--AAIRWPDIAF 256 (294)
T ss_dssp TC--------EEEECCCSSSSCHHHHHHHHHHHTTCC-CEEEEECSSHHHHHHHHHTTSCBEEEEHHH--HTSCCTTEEE
T ss_pred CC--------CEEeeCCCCCchHHHHHHHHHHHCCCC-cceeeecCCHHHHHHHHHcCCeEEEechhh--hhcCCCceEE
Confidence 42 122222 223456788888885 34443344555431 1222223332111 2234456765
Q ss_pred e--cCceEEEEEEEEEeecchhhhhcCchhHHHHHHHHHHHHH
Q 018852 272 I--EGGVVLESQAVLVASRKSLIRRKGVLDATHEILERLEAHL 312 (349)
Q Consensus 272 i--e~g~IleSsA~LIaN~~s~~~k~~~~~~i~~li~rl~~vl 312 (349)
+ ++. -....-.++.++... . ..++.+++.++...
T Consensus 257 ~~l~~~-~~~~~~~l~~~~~~~--~----~~~~~f~~~l~~~~ 292 (294)
T 1ixc_A 257 ARIVGT-RVKVPISCIFRKEKQ--P----PILARFVEHVRRSA 292 (294)
T ss_dssp EEECCT-TCEEEEEEEEESSSC--C----HHHHHHHHHHHHHH
T ss_pred EECcCC-CcceeEEEEEcCCCC--C----HHHHHHHHHHHHHh
Confidence 4 321 234566677766532 1 35677777776543
No 88
>3ir1_A Outer membrane lipoprotein GNA1946; D-methionine cultured, protein binding; 2.15A {Neisseria meningitidis}
Probab=70.25 E-value=9.4 Score=35.57 Aligned_cols=78 Identities=15% Similarity=0.167 Sum_probs=57.9
Q ss_pred eEEEecCCCCchHHHHHHHHHCCC-ccCCCC-----CCceEEecCCCCCeEEEeecCCchhhhcccCceeeeeeccceec
Q 018852 84 IRLGLPSKGRMAADTLDLLKDCQL-SVKQVN-----PRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVS 157 (349)
Q Consensus 84 LrIALP~KGRL~e~t~~LL~~aGi-~~~~~~-----~R~L~~~~~~~p~vev~~vR~~DIP~yV~~G~aDlGIvG~DvL~ 157 (349)
=+||+|+...=..-++.||+++|+ +++... .-.-+... -.+++|.-+.+.-+|+-+.+ +|+.+.--++..
T Consensus 101 a~IaIPnDptN~~RaL~lL~~aGLIkLk~~~~~~~~T~~DI~~N--pk~lk~~e~daaql~r~l~d--vD~avin~nya~ 176 (245)
T 3ir1_A 101 STVSAPNDPSNFARVLVMLDELGWIKLKDGINPLTASKADIAEN--LKNIKIVELEAAQLPRSRAD--VDFAVVNGNYAI 176 (245)
T ss_dssp CEEEEECSHHHHHHHHHHHHHTTSSEECTTCCGGGCCGGGEEEC--TTCCEEEEECGGGSGGGGGT--SSEEEECHHHHH
T ss_pred CEEEecCCccHHHHHHHHHHHCCCEEecCCCCCCcCCHHHHhcC--CCCCEEEEeCHHHHhhhccc--cCEEEEchhHHH
Confidence 479999877777889999999998 443311 11223332 34689999999999998855 899999999999
Q ss_pred ccCCCCcc
Q 018852 158 EFGQGNED 165 (349)
Q Consensus 158 E~~~~~~~ 165 (349)
+.|.+..+
T Consensus 177 ~agl~~~d 184 (245)
T 3ir1_A 177 SSGMKLTE 184 (245)
T ss_dssp HTTCCGGG
T ss_pred HcCCCccc
Confidence 98866433
No 89
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=69.60 E-value=12 Score=32.60 Aligned_cols=165 Identities=14% Similarity=0.154 Sum_probs=80.7
Q ss_pred CCeEE--EeecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcc-cEEEEEEEeCCCccC--cccchHHh
Q 018852 125 SNLEV--WFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYG-DCRLSLAIPKYGIFE--NINSLREL 199 (349)
Q Consensus 125 p~vev--~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG-~CRLvvAvP~~~~~~--dv~sl~dL 199 (349)
|++++ ......++...+..|.+|+||+..+... .++. . ..++ ..++++++|.+..+. +.-+++||
T Consensus 122 P~i~i~l~~~~~~~~~~~l~~g~~Dl~i~~~~~~~------~~l~-~---~~l~~~~~~~~v~~~~~pl~~~~~~~~~dL 191 (306)
T 3fzv_A 122 PGVEIRIRDGEQQELVQGLTSGRFDLAFLYEHDLD------STIE-T---EPLMPPQRPHALLPEGHRFAGQAQVSLRDL 191 (306)
T ss_dssp TTEEEEEEEECHHHHHHHHHHTSCSEEEECSSSCC------TTEE-E---EESSCCBCCEEEEETTCTTTTSSEECHHHH
T ss_pred CCeEEEEEeCCHHHHHHHHHCCCccEEEEeccccc------cccc-e---eeeeeccccEEEecCCCcccCCCCCCHHHH
Confidence 44444 3445667789999999999998643211 1222 1 2233 455667777764322 22367887
Q ss_pred hcCCccCCCCCcEEEcCC---CccHHHHHHhcCCceEEEEecCCccccccC---CCcceeeeecccchhhHhhCC-cEEe
Q 018852 200 AQMPQWTAEKPLRVATGF---TYLGPKFMKDNGLKHVVFSTADGALEAAPA---MGIADAILDLVSSGTTLRENN-LKEI 272 (349)
Q Consensus 200 ~~~~~~~~~~~lRVATkY---Pnlar~yf~~~Gi~~v~Ii~l~GSvElAP~---lGlAD~IVDIVsTGtTLraNg-Lk~i 272 (349)
.+.+ -|.... .....++|++.|+. ..++.-..+.++... -|..=+|+--..-..-+.... |+.+
T Consensus 192 ~~~~--------~i~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~v~~g~Gia~lp~~~~~~~~~~~~~l~~~ 262 (306)
T 3fzv_A 192 CLEP--------MILLDVQPSRTYFVSLFEELGLT-PNIAFSSPSIEMVRGMVGQGFGFSLLVTRPHSECTYDGKKVVMV 262 (306)
T ss_dssp TTSC--------EEEECCTTHHHHHHHHHHHTTCC-CCEEEEESCHHHHHHHHHTTSCBEEECCCCSCSBCTTSCBEEEE
T ss_pred cCCC--------EEEecCCcchHHHHHHHHHcCCC-CCeEEEeCCHHHHHHHHHcCCCEEEEecccccccccCCCceEEE
Confidence 7531 222221 23455678888875 344433444544321 121112221111111112222 6655
Q ss_pred c-CceEEEEEEEEEeecchhhhhcCchhHHHHHHHHHHHHHh
Q 018852 273 E-GGVVLESQAVLVASRKSLIRRKGVLDATHEILERLEAHLR 313 (349)
Q Consensus 273 e-~g~IleSsA~LIaN~~s~~~k~~~~~~i~~li~rl~~vl~ 313 (349)
. .+......-.++.++..... ..++.+++.++..++
T Consensus 263 ~~~~~~~~~~~~l~~~~~~~~~-----~~~~~f~~~l~~~~~ 299 (306)
T 3fzv_A 263 DLAEPVSTSGLAAAWLKRAQLT-----KPARLFVDYCREQLG 299 (306)
T ss_dssp EESSCCCBCCCEEEEETTSCCC-----HHHHHHHHHHHHHHH
T ss_pred ECCCCCccceEEEEEeCCcccC-----HHHHHHHHHHHHHHH
Confidence 3 11233445566666554322 346677777766554
No 90
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=69.14 E-value=4.2 Score=36.51 Aligned_cols=195 Identities=10% Similarity=0.029 Sum_probs=103.8
Q ss_pred CCCchHHHHHHHHHCCCccCCCCCCceEEecCCCCCeEEEeecCCchhhhcccCceeeeeeccceecccCCCCccceeec
Q 018852 91 KGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVH 170 (349)
Q Consensus 91 KGRL~e~t~~LL~~aGi~~~~~~~R~L~~~~~~~p~vev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l 170 (349)
+|---|=..++.++.|+++.-. .+....... +....-..+-..+..|.+|+++.+.-+-.|... .+..
T Consensus 69 ~G~~vdll~~ia~~lg~~~~~~-----~~~~~~~g~--~~~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~~----~~~f- 136 (294)
T 2rc8_A 69 YGYCIDLLEQLAEDMNFDFDLY-----IVGDGKYGA--WKNGHWTGLVGDLLSGTANMAVTSFSINTARSQ----VIDF- 136 (294)
T ss_dssp ESHHHHHHHHHHHHHTEEEEEE-----ECTTCCCCC--EETTEECHHHHHHHHTSCSEECSSCBCCHHHHT----TSEE-
T ss_pred eEEhHHHHHHHHHHcCCcEEEE-----ECCCCcccc--cCCCCHHHHHHHHHCCCcCEEEeccccCHhHhc----eEEE-
Confidence 5755555555666677754320 010000110 112223567788999999999977655555432 1211
Q ss_pred CCCCcccEEEEEEEeCCCccCcccchHHhhcCCccCCCCCcEEEcCCCccHHHHHHhcCCc---eEEEEecCCccccc--
Q 018852 171 DALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLK---HVVFSTADGALEAA-- 245 (349)
Q Consensus 171 ~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~~~~lRVATkYPnlar~yf~~~Gi~---~v~Ii~l~GSvElA-- 245 (349)
--+|-....++.++.+. ..+++++||.... ....+|||+-.-.....||++..-+ .++.+.....-|+.
T Consensus 137 -s~P~~~~~~~i~~~~~~--~~i~~~~dL~~~~---~~~g~~vg~~~gs~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~ 210 (294)
T 2rc8_A 137 -TSPFFSTSLGILVRTRG--TELSGIHDPKLHH---PSQGFRFGTVRESSAEDYVRQSFPEMHEYMRRYNVPATPDGVQY 210 (294)
T ss_dssp -CSCSEEEEEEEEEETTS--CCCCSTTCHHHHS---CCTTCCEECBTTSHHHHHHHHHCHHHHHHHGGGCBSSHHHHHHH
T ss_pred -ccchHhcceEEEEECCC--CCcCChhhhhhcC---cccCeEEEEEcCChHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 23677778888888762 3567777776210 0124789998877788888775311 01111122222321
Q ss_pred cCC--CcceeeeecccchhhHhh----CCcEEecCceEEEEEEEEEeecchhhhhcCchhHHHHHHHHHH
Q 018852 246 PAM--GIADAILDLVSSGTTLRE----NNLKEIEGGVVLESQAVLVASRKSLIRRKGVLDATHEILERLE 309 (349)
Q Consensus 246 P~l--GlAD~IVDIVsTGtTLra----NgLk~ie~g~IleSsA~LIaN~~s~~~k~~~~~~i~~li~rl~ 309 (349)
-.- |-+|+++.-..+..-+.. .+|+++. ..+....-.+..++.+ . .++.+++.+.+++
T Consensus 211 l~~~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~ia~~k~~-~----l~~~in~al~~l~ 274 (294)
T 2rc8_A 211 LKNDPEKLDAFIMDKALLDYEVSIDADCKLLTVG-KPFAIEGYGIGLPPNS-P----LTSNISELISQYK 274 (294)
T ss_dssp HHSSSCCCSEEEEEHHHHHHHHHTCSSSCEEECS-CCEEEEEECCEECTTC-T----HHHHHHHHHHHHH
T ss_pred HHhccCceeEEEecHHHHHHHHhhCCCCCEEEcC-CcccccceEEEecCCC-H----HHHHHHHHHHHHH
Confidence 223 778888766555555433 2477774 2343334445555543 1 2245566555554
No 91
>2qsx_A Putative transcriptional regulator, LYSR family; the putative transcriptional regulator, PSI-2, structure initiative, MCSG; 1.64A {Vibrio parahaemolyticus}
Probab=67.05 E-value=27 Score=29.14 Aligned_cols=159 Identities=17% Similarity=0.139 Sum_probs=62.9
Q ss_pred CCCeEEEeecCCchhhhcccCceeeeeecc--ceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhc
Q 018852 124 LSNLEVWFQRPKDIVRKLLSGDLDLGIVGL--DTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQ 201 (349)
Q Consensus 124 ~p~vev~~vR~~DIP~yV~~G~aDlGIvG~--DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~ 201 (349)
+|++++.+.-..... .+..|.+|+||+.. +. +. . .. -.++.-+++++++.+ |....+++||.+
T Consensus 45 ~P~i~l~l~~~~~~~-~l~~~~~Dlai~~~~~~~--~~----~-~~-----~~l~~~~~~~v~sp~--~~~~~~~~dL~~ 109 (218)
T 2qsx_A 45 HPNIRVKILTGDGAV-KNIHGESDLHVRCLPLST--HY----E-YS-----QLLCEETLLLIGNTN--LPKLSDNQAISH 109 (218)
T ss_dssp CTTCEEEEEECCSCC------CCSEEEEEEECCS--CC----S-SE-----EEEEEEEEEEEEETT--CC-------CTT
T ss_pred CCCeEEEEEecCCcc-cccCCCCCEEEEcCCCCC--CC----c-cc-----eeccCCCEEEEEChh--hccCCCHHHHhc
Confidence 355555544333333 78899999999743 21 11 1 12 123556777777766 221235566654
Q ss_pred CCccCCCCCcEEEc-CCCccHHHHHHhcCCceE--EEEecCCccccc-----cCCCcceeeeecccchhhHhhCCcEEec
Q 018852 202 MPQWTAEKPLRVAT-GFTYLGPKFMKDNGLKHV--VFSTADGALEAA-----PAMGIADAILDLVSSGTTLRENNLKEIE 273 (349)
Q Consensus 202 ~~~~~~~~~lRVAT-kYPnlar~yf~~~Gi~~v--~Ii~l~GSvElA-----P~lGlAD~IVDIVsTGtTLraNgLk~ie 273 (349)
.+- |.. .......+||++.|+..+ .+..-..+.+++ =-+|+ +++.-..--.-++...|+.+-
T Consensus 110 ~~~--------i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~G~Gi--a~lp~~~~~~~l~~g~L~~~~ 179 (218)
T 2qsx_A 110 YPF--------IPQTTRPQLWEQFKQENDLECPITYHSVGFEHFYLACEAVRMEKGL--ALLPDFMAQFSILRGDIQHIG 179 (218)
T ss_dssp SCB--------CCCTTCTTHHHHHHTCC-----CCBCSBCCSSHHHHHHHHHTTCCB--EEEEHHHHHHHHHTTSEEEEE
T ss_pred CCe--------EecCCCchHHHHHHHHcCCCcccCCCCceeccHHHHHHHHHhCCCE--EEecHHHHHHHHHCCCccccC
Confidence 211 111 112345677877775210 011111222221 11233 233211112345555687653
Q ss_pred Cce-EEEEEEEEEeecchhhhhcCchhHHHHHHHHHHHHH
Q 018852 274 GGV-VLESQAVLVASRKSLIRRKGVLDATHEILERLEAHL 312 (349)
Q Consensus 274 ~g~-IleSsA~LIaN~~s~~~k~~~~~~i~~li~rl~~vl 312 (349)
.+. .....-.++.++..... ..++.+++.|+..+
T Consensus 180 ~~~~~~~~~~~l~~~~~~~~~-----~~~~~f~~~l~~~~ 214 (218)
T 2qsx_A 180 NLKLHSGYGYYVVIPNFRLTS-----RKVALFHDWLKDKL 214 (218)
T ss_dssp EEEEEEEEEEEEECCTTCTTC-----HHHHHHHHHHHHHH
T ss_pred ccccCCCceEEEEeccccCCC-----HHHHHHHHHHHHHh
Confidence 212 23344455555544322 34666777666544
No 92
>3k2d_A ABC-type metal ION transport system, periplasmic; alpha/beta domain, immune system; 2.60A {Vibrio vulnificus}
Probab=66.88 E-value=14 Score=34.08 Aligned_cols=76 Identities=17% Similarity=0.232 Sum_probs=57.3
Q ss_pred eEEEecCCCCchHHHHHHHHHCCC-ccCCCCC----CceEEecCCCCCeEEEeecCCchhhhcccCceeeeeeccceecc
Q 018852 84 IRLGLPSKGRMAADTLDLLKDCQL-SVKQVNP----RQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSE 158 (349)
Q Consensus 84 LrIALP~KGRL~e~t~~LL~~aGi-~~~~~~~----R~L~~~~~~~p~vev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E 158 (349)
=+||+|+...=..-++.||+++|+ +++.... -.-+.. |-.+++|.-+.+.-+|+-+. .+|+.+.--++..+
T Consensus 106 a~IaipnD~tN~~RaL~lL~~aGLIkLk~~~~~~~t~~DI~~--Npk~lk~~e~~aaql~r~l~--dvD~avin~nya~~ 181 (237)
T 3k2d_A 106 VRIAVPNDPTNLGRSLLLLEQQGLIKLRPEVGLLATVRDIVE--NPKNITIMELDAAQLPRSLD--DVALSIINTTYASS 181 (237)
T ss_dssp CEEEEECSHHHHHHHHHHHHHTTSCEECTTCCSSCCGGGEEE--CTTCCEEEEECGGGHHHHTT--TSSEEEECHHHHGG
T ss_pred CEEEecCCccHHHHHHHHHHHCCCEEecCCCCCCCCHHHHhC--CCCCCEEEEcCHHHHhhhcc--CccEEEecccHHHH
Confidence 489999877777789999999998 4443211 122333 23468999999999999884 58999999999999
Q ss_pred cCCCC
Q 018852 159 FGQGN 163 (349)
Q Consensus 159 ~~~~~ 163 (349)
.|.+.
T Consensus 182 agl~p 186 (237)
T 3k2d_A 182 INLTP 186 (237)
T ss_dssp GTCCH
T ss_pred cCCCc
Confidence 88663
No 93
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=66.27 E-value=6.2 Score=35.16 Aligned_cols=162 Identities=15% Similarity=0.103 Sum_probs=83.4
Q ss_pred CCeEEEee--cCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCc---c-cchHH
Q 018852 125 SNLEVWFQ--RPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFEN---I-NSLRE 198 (349)
Q Consensus 125 p~vev~~v--R~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~d---v-~sl~d 198 (349)
|++++.+. ...|+...+.+|.+|+||+.... . . .++. -..++..++++++|.+..+.. . -+++|
T Consensus 117 P~v~i~l~~~~~~~~~~~l~~g~~Dlai~~~~~-~--~---~~l~----~~~L~~~~~~~v~~~~hpla~~~~~~i~~~d 186 (312)
T 2h9b_A 117 PNLRIELYEMGTKAQTEALKEGRIDAGFGRLKI-S--D---PAIK----HSLLRNERLMVAVHASHPLNQMKDKGVHLND 186 (312)
T ss_dssp TTCEEEEEECCHHHHHHHHHTTSCSEEEESSCC-C--C---TTEE----EEEEEEEEEEEEEETTSGGGGGTTTCBCGGG
T ss_pred CCcEEEEEeCCHHHHHHHHHcCCCCEEEEeCCC-C--C---CCce----EEEeecceEEEEEcCCCccccccCCCCCHHH
Confidence 44444433 45788999999999999986432 1 1 2222 134577899999988743222 1 35666
Q ss_pred hhcCCccCCCCCcEEEc------CCCccHHHHHHhcCCceEEEEecCCcccccc---CCCcceeeeecccchhhHhhCCc
Q 018852 199 LAQMPQWTAEKPLRVAT------GFTYLGPKFMKDNGLKHVVFSTADGALEAAP---AMGIADAILDLVSSGTTLRENNL 269 (349)
Q Consensus 199 L~~~~~~~~~~~lRVAT------kYPnlar~yf~~~Gi~~v~Ii~l~GSvElAP---~lGlAD~IVDIVsTGtTLraNgL 269 (349)
|.+. .-|.. .+-....++|.+.|+. ..+..-..+.+.+. .-|..=+++--.- ......++
T Consensus 187 L~~~--------~~i~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~v~~g~Gia~lp~~~--~~~~~~~l 255 (312)
T 2h9b_A 187 LIDE--------KILLYPSSPKPNFSTHVMNIFSDHGLE-PTKINEVREVQLALGLVAAGEGISLVPAST--QSIQLFNL 255 (312)
T ss_dssp STTS--------EEEECCCSSSSSHHHHHHHHHHTTTCC-CSEEEECSSHHHHHHHHHTTSCBEEEEGGG--GGBCCTTE
T ss_pred HcCC--------CEEEeCCCCCchHHHHHHHHHHHcCCC-CCceEEecCHHHHHHHHHcCCcEEEecchh--hhcCCCCe
Confidence 6542 12221 1123456788888875 34433344444331 1222212332110 11122455
Q ss_pred EEec--CceEEEEEEEEEeecchhhhhcCchhHHHHHHHHHHHHHhh
Q 018852 270 KEIE--GGVVLESQAVLVASRKSLIRRKGVLDATHEILERLEAHLRA 314 (349)
Q Consensus 270 k~ie--~g~IleSsA~LIaN~~s~~~k~~~~~~i~~li~rl~~vl~A 314 (349)
+.+. + ......-.++.++.. . . ..++.+++.++.....
T Consensus 256 ~~~~l~~-~~~~~~~~l~~~~~~-~-~----~~~~~f~~~l~~~~~~ 295 (312)
T 2h9b_A 256 SYVPLLD-PDAITPIYIAVRNME-E-S----TYIYSLYETIRQIYAY 295 (312)
T ss_dssp EEEEBCS-TTCEEEEEEEEETTC-C-C----HHHHHHHHHHHHHHHH
T ss_pred EEEECCC-CcccceEEEEEcCCC-C-C----HHHHHHHHHHHHhhcc
Confidence 5542 2 123445666766653 1 1 3567777777766544
No 94
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=66.11 E-value=12 Score=34.88 Aligned_cols=75 Identities=17% Similarity=0.269 Sum_probs=51.5
Q ss_pred eEEEecCCCCchHHHHHHHHHCCC-ccCCCCC----CceEEecCCCCCeEEEeecCCchhhhcccCceeeeeeccceecc
Q 018852 84 IRLGLPSKGRMAADTLDLLKDCQL-SVKQVNP----RQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSE 158 (349)
Q Consensus 84 LrIALP~KGRL~e~t~~LL~~aGi-~~~~~~~----R~L~~~~~~~p~vev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E 158 (349)
=+||+|+...-..-.+.+|+++|+ .+..... -+-+... ..+++|.-+.+.++|+-+ |.+|.+++-..|..+
T Consensus 138 k~IAip~~~s~~~~~l~lL~~~Gli~l~~~~~~~~t~~dI~~n--p~~v~~v~~~~~~~~~al--~~VDaa~i~~~~a~~ 213 (295)
T 1p99_A 138 AKVVIPNDVSNQARALKLLEAAGLIKLKKDFGLAGTVKDITSN--PKHLKITAVDAQQTARAL--SDVDIAVINNGVATK 213 (295)
T ss_dssp CEEEEECSHHHHHHHHHHHHHTTSCEECTTCCTTCCGGGEEEC--TTCCEEEEECGGGTTGGG--GTSSEEEECHHHHHH
T ss_pred CEEEecCCCcHHHHHHHHHHHCCCccccCCCCCcCChhhhhcC--CCceEEEEcCHHHHHHHh--hcCCEEEECcHHHHH
Confidence 389999544445556678999998 4433111 1122222 236899999999999887 689999998888877
Q ss_pred cCCC
Q 018852 159 FGQG 162 (349)
Q Consensus 159 ~~~~ 162 (349)
.+.+
T Consensus 214 ag~~ 217 (295)
T 1p99_A 214 AGKD 217 (295)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 6643
No 95
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=64.37 E-value=11 Score=32.27 Aligned_cols=127 Identities=18% Similarity=0.210 Sum_probs=77.6
Q ss_pred EEEeecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccCC
Q 018852 128 EVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTA 207 (349)
Q Consensus 128 ev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~ 207 (349)
++..+.-.++...+..|.+|+.+.|.-.-.|.... +.- --+|-....++.+..+. -..+.+++||.+
T Consensus 57 ~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~eR~~~----~~f--s~py~~~~~~~~v~~~~-~~~~~~~~dl~g------ 123 (243)
T 4h5g_A 57 EILSMSFDNVLTSLQTGKADLAVAGISATDERKEV----FDF--SIPYYENKISFLVHKAD-VEKYKDLTSLES------ 123 (243)
T ss_dssp EEEECCGGGHHHHHHTTSCSEECSSCBCCHHHHTT----EEE--CSCSBCCCEEEEEEGGG-TTTCCSHHHHHT------
T ss_pred EEecccHHHHHHHHHcCCCCcccccccCChhHccE----EEc--cCccccCcccccccccc-cccccccccCCC------
Confidence 34444456778889999999999887665555321 211 23455556666776542 246778888875
Q ss_pred CCCcEEEcCCCccHHHHHHhcCCceEEEEecCCccccc--cCCCcceeeeecccch-hhHhhC-CcEE
Q 018852 208 EKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAA--PAMGIADAILDLVSSG-TTLREN-NLKE 271 (349)
Q Consensus 208 ~~~lRVATkYPnlar~yf~~~Gi~~v~Ii~l~GSvElA--P~lGlAD~IVDIVsTG-tTLraN-gLk~ 271 (349)
+|||...-.....++.+..-. .+++......|+- -.-|-+|+++--..++ .-++.| ++..
T Consensus 124 ---~~i~v~~g~~~~~~l~~~~~~-~~i~~~~~~~~~~~~l~~GrvD~~~~d~~~~~~~~~~~~~~~~ 187 (243)
T 4h5g_A 124 ---ANIAAQKGTVPESMVKEQLPK-AQLTSLTNMGEAVNELQAGKIDAVHMDEPVALSYAAKNAGLAV 187 (243)
T ss_dssp ---SEEEEETTSHHHHHHHHHCTT-SEEEEESCHHHHHHHHHHTSCSEEEEEHHHHHHHHHHCTTEEE
T ss_pred ---CEEEecCCcHHHHHHHHhccc-ceeEEeCCHHHHHHHHHcCCccEEEecHHHHHHHHHHCCCCce
Confidence 688887767777888776433 5777666554432 3457888765333333 334444 4443
No 96
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=63.63 E-value=10 Score=34.05 Aligned_cols=165 Identities=15% Similarity=0.230 Sum_probs=81.5
Q ss_pred CCCeEEEee--cCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccC--cccchHHh
Q 018852 124 LSNLEVWFQ--RPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFE--NINSLREL 199 (349)
Q Consensus 124 ~p~vev~~v--R~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~--dv~sl~dL 199 (349)
.|++++-+. ...++...+.+|.+|+||+....-. . .++. ...++..++++++|.+..+. ..-+++||
T Consensus 119 ~P~v~i~l~~~~~~~~~~~l~~g~~Dlai~~~~~~~--~---~~l~----~~~L~~~~~~~v~~~~~pl~~~~~~~~~dL 189 (324)
T 1al3_A 119 YPRVSLHMHQGSPTQIAEAVSKGNADFAIATEALHL--Y---DDLV----MLPCYHWNRSIVVTPEHPLATKGSVSIEEL 189 (324)
T ss_dssp CTEEEEEEEECCHHHHHHHHHTTCCSEEEESSCCCT--T---SCEE----EEEEEEECEEEEECTTSTTTTTSCCCHHHH
T ss_pred CCCCEEEEEECCHHHHHHHHHCCCceEEEEecCCCC--C---CCee----EEEecCCceEEEEcCCCccccCCCCCHHHH
Confidence 355655544 3458889999999999998643211 1 2222 12356677888888774322 23457787
Q ss_pred hcCCccCCCCCcEEEcC--CCccHHHHHHhcCCceEEEEecCCccccc---cCCCcceeeeecccchhhHhhCCcEEecC
Q 018852 200 AQMPQWTAEKPLRVATG--FTYLGPKFMKDNGLKHVVFSTADGALEAA---PAMGIADAILDLVSSGTTLRENNLKEIEG 274 (349)
Q Consensus 200 ~~~~~~~~~~~lRVATk--YPnlar~yf~~~Gi~~v~Ii~l~GSvElA---P~lGlAD~IVDIVsTGtTLraNgLk~ie~ 274 (349)
.+.+- +..... +.....++|.+.|+. ..++.-..+.+.. ..-|..=+|+.-..- ......+|+.+.-
T Consensus 190 ~~~~~------i~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~lv~~G~Giailp~~~~-~~~~~~~L~~~~~ 261 (324)
T 1al3_A 190 AQYPL------VTYTFGFTGRSELDTAFNRAGLT-PRIVFTATDADVIKTYVRLGLGVGVIASMAV-DPVSDPDLVKLDA 261 (324)
T ss_dssp HTSEE------EEECTTSTTHHHHHHHHHHHTCC-CEEEEEESSHHHHHHHHHHTSCEEEEEGGGC-CTTTCTTSEEEEC
T ss_pred hCCCe------EEecCCCcHHHHHHHHHHHcCCC-CceEEEeCCHHHHHHHHHhCCCeEEechhhh-hhhccCCeEEEEC
Confidence 75311 111111 123456788888875 3444334444432 111221123321111 1112356877631
Q ss_pred -ceEEEEEEEEEeecchhhhhcCchhHHHHHHHHHHH
Q 018852 275 -GVVLESQAVLVASRKSLIRRKGVLDATHEILERLEA 310 (349)
Q Consensus 275 -g~IleSsA~LIaN~~s~~~k~~~~~~i~~li~rl~~ 310 (349)
+......-.++.++..... ..++.+++.++.
T Consensus 262 ~~~~~~~~~~l~~~~~~~~~-----~~~~~fi~~l~~ 293 (324)
T 1al3_A 262 NGIFSHSTTKIGFRRSTFLR-----SYMYDFIQRFAP 293 (324)
T ss_dssp BTTBCCEEEEEEEETTCCCC-----HHHHHHHHHHCT
T ss_pred CCCCcceEEEEEEeCCCCCC-----HHHHHHHHHHHH
Confidence 1223345566666544321 244555555543
No 97
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=63.08 E-value=3.4 Score=34.28 Aligned_cols=96 Identities=16% Similarity=0.208 Sum_probs=52.8
Q ss_pred eEEEeecCCchhhhcccCc-eeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCcc
Q 018852 127 LEVWFQRPKDIVRKLLSGD-LDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQW 205 (349)
Q Consensus 127 vev~~vR~~DIP~yV~~G~-aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~ 205 (349)
+++......++-..+..|. +|+++++.....+...+ .++++......|..-++++++|.+..+. .+++||... .+
T Consensus 29 v~~~~~~s~~l~~~l~~g~~~Dv~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vlv~~~~~~~~--~~~~dL~~~-~~ 104 (231)
T 1atg_A 29 VVISSGSSGPVYAQIVNGAPYNVFFSADEKSPEKLDN-QGFALPGSRFTYAIGKLVLWSAKPGLVD--NQGKVLAGN-GW 104 (231)
T ss_dssp EEEEEECHHHHHHHHHTTCCCSEEECSSSHHHHHHHH-TTCBCTTCCEEEEECCEEEEESSTTTSC--TTSGGGGSS-SC
T ss_pred EEEEECCcHHHHHHHHcCCCCCEEEeCChhHHHHHHh-cCCCcCCceeEeeeeeEEEEEcCCCCCC--cchhhhccC-CC
Confidence 4555556678888899998 99999965322211000 0111100123456678899999874321 246666531 00
Q ss_pred CCCCCcEEEcCCCc------cHHHHHHhcCCc
Q 018852 206 TAEKPLRVATGFTY------LGPKFMKDNGLK 231 (349)
Q Consensus 206 ~~~~~lRVATkYPn------lar~yf~~~Gi~ 231 (349)
.+|+.-.|. .++++|++.|+.
T Consensus 105 -----~~i~~~~~~~~~~~~~~~~~l~~~g~~ 131 (231)
T 1atg_A 105 -----RHIAISNPQIAPYGLAGTQVLTHLGLL 131 (231)
T ss_dssp -----SCEEEECTTTCHHHHHHHHHHHHTTCH
T ss_pred -----CEEEecCCCCCchhHHHHHHHHHCCCc
Confidence 144433333 456778888863
No 98
>3up9_A Putative uncharacterized protein; membrane lipoprotein, L-methionine binding protein, NLPA LIP structural genomics; HET: PG4 PE4; 2.35A {Actinomyces odontolyticus} SCOP: c.94.1.0
Probab=61.43 E-value=4.7 Score=37.54 Aligned_cols=75 Identities=20% Similarity=0.248 Sum_probs=57.0
Q ss_pred ceEEEecCCCCchHHHHHHHHHCCC-ccCCCCC--Cce-EEecCCCCCeEEEeecCCchhhhcccCceeeeeeccceecc
Q 018852 83 EIRLGLPSKGRMAADTLDLLKDCQL-SVKQVNP--RQY-VAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSE 158 (349)
Q Consensus 83 ~LrIALP~KGRL~e~t~~LL~~aGi-~~~~~~~--R~L-~~~~~~~p~vev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E 158 (349)
-=+||+|+...=..-++.||+++|+ +++.... -.. ..++ .+++|.-+.+..+|+-+.+ +|+.+.--++..+
T Consensus 106 Ga~IaIPnD~tN~~RaL~lL~~aGLIkLk~~~~~~~~~T~~DI---k~lk~~e~daaqlpr~l~d--vd~avin~nya~~ 180 (245)
T 3up9_A 106 GGTIGIISDTANQSRALELLATQGLVSIPEGDGDVNINTVTKL---KNFDFREVEGPQLVRSLDD--FDYAVINGNFAQE 180 (245)
T ss_dssp TEEEEEECSHHHHHHHHHHHHHTTSEECCCCC--CSTTTSEES---SSEEEEEECGGGHHHHTTT--SSEEEECHHHHHH
T ss_pred CCEEEEecCcchHHHHHHHHHHCCCEEecCCCCCcCcCChhhc---cccEEEEeCHHHHhhhccc--CCEEEEchhHHHH
Confidence 3589999888788889999999999 3433111 111 1222 4799999999999999865 8999999999999
Q ss_pred cCCC
Q 018852 159 FGQG 162 (349)
Q Consensus 159 ~~~~ 162 (349)
.|.+
T Consensus 181 agl~ 184 (245)
T 3up9_A 181 GGKT 184 (245)
T ss_dssp TTCC
T ss_pred cCcC
Confidence 9865
No 99
>4ib2_A Putative lipoprotein; putative methionine-bindning, NLPA lipoprotein, PF03180 FAMI structural genomics, joint center for structural genomics; 1.76A {Ruminococcus gnavus}
Probab=59.19 E-value=12 Score=34.79 Aligned_cols=75 Identities=16% Similarity=0.143 Sum_probs=56.6
Q ss_pred eEEEecCCCCchHHHHHHHHHCCC-ccCCCCC----CceEEecCCCCCeEEEeecCCchhhhcccCceeeeeeccceecc
Q 018852 84 IRLGLPSKGRMAADTLDLLKDCQL-SVKQVNP----RQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSE 158 (349)
Q Consensus 84 LrIALP~KGRL~e~t~~LL~~aGi-~~~~~~~----R~L~~~~~~~p~vev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E 158 (349)
=+||+|+...-..-++.||+++|+ +++.... -.-+... -.+++|.-+.+..+|+-+. .+|+.+.-.++..+
T Consensus 110 a~IAipnd~sN~~RaL~lL~~aGLIkLk~~~~~~~t~~DI~~N--pk~lk~~el~aaql~r~l~--dvD~avin~n~a~~ 185 (252)
T 4ib2_A 110 DKIAVPNDTTNEARALLLLQDNGIITLKDGAGLNATVNDIEEN--PYNVEIVELEAAQVARVTG--ETAYVVLNGNYALE 185 (252)
T ss_dssp CEEEEECSHHHHHHHHHHHHHTTSCEECTTCGGGCCGGGEEEC--TTCCEEEEECGGGGGGGTT--TSSEEEECHHHHHH
T ss_pred CEEEeeCCCCHHHHHHHHHHHCCCEEecCCCCCCCCHHHHhcC--CCCcEEEEcCHHHHHhhhc--cCCEEEEchhHHHH
Confidence 479999777667778899999997 4443211 1123332 3468999999999999885 58999999999999
Q ss_pred cCCC
Q 018852 159 FGQG 162 (349)
Q Consensus 159 ~~~~ 162 (349)
.|.+
T Consensus 186 agl~ 189 (252)
T 4ib2_A 186 AGYS 189 (252)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 8865
No 100
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=59.09 E-value=8.8 Score=34.52 Aligned_cols=163 Identities=18% Similarity=0.165 Sum_probs=83.7
Q ss_pred CCeEEEe--ecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCc---c-cchHH
Q 018852 125 SNLEVWF--QRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFEN---I-NSLRE 198 (349)
Q Consensus 125 p~vev~~--vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~d---v-~sl~d 198 (349)
|++++.+ ....|+...+..|.+|+||+..+. . . .++. -..++..++++++|.+..+.. . -+++|
T Consensus 117 P~v~l~l~~~~~~~~~~~l~~g~~Dlai~~~~~-~--~---~~l~----~~~L~~~~~~~v~~~~hpl~~~~~~~i~~~d 186 (313)
T 2h98_A 117 PEIHIELIECGTKDQINALKQGKIDLGFGRLKI-T--D---PAIR----RIMLHKEQLKLAIHKHHHLNQFAATGVHLSQ 186 (313)
T ss_dssp TTSEEEEEECCHHHHHHHHHHTSCSEEEESSCC-C--C---TTEE----EEEEEEEEEEEEEETTSGGGGGTTSCBCGGG
T ss_pred CCeEEEEEeCChHHHHHHHHcCCCCEEEEeCCC-C--C---CCee----EEEeeeCcEEEEEcCCCcccccCCCCcCHHH
Confidence 4444443 345788999999999999986432 1 1 2222 134677889999988743222 1 35677
Q ss_pred hhcCCccCCCCCcEEEc------CCCccHHHHHHhcCCceEEEEecCCccccc---cCCCcceeeeecccchhhHhhCCc
Q 018852 199 LAQMPQWTAEKPLRVAT------GFTYLGPKFMKDNGLKHVVFSTADGALEAA---PAMGIADAILDLVSSGTTLRENNL 269 (349)
Q Consensus 199 L~~~~~~~~~~~lRVAT------kYPnlar~yf~~~Gi~~v~Ii~l~GSvElA---P~lGlAD~IVDIVsTGtTLraNgL 269 (349)
|.+. + -|.. .+.....++|.+.|+. ..+..-..+.+.. ..-|..=+++.-.-. .....++
T Consensus 187 L~~~-------~-~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~g~Gia~lp~~~~--~~~~~~l 255 (313)
T 2h98_A 187 IIDE-------P-MLLYPVSQKPNFATFIQSLFTELGLV-PSKLTEIREIQLALGLVAAGEGVCIVPASAM--DIGVKNL 255 (313)
T ss_dssp GTTS-------C-EEECCCSSSSSHHHHHHHHHHHTTCC-CSCEEECSCHHHHHHHHHTTSCBEEEEGGGG--GSCCTTE
T ss_pred HcCC-------C-EEEecCCCCchHHHHHHHHHHHcCCC-CCceEEeCCHHHHHHHHHcCCcEEEeehhhh--hcCCCCe
Confidence 6642 1 2221 1223455678888874 2333323444432 112322233322111 1112355
Q ss_pred EEe--cCceEEEEEEEEEeecchhhhhcCchhHHHHHHHHHHHHHhhc
Q 018852 270 KEI--EGGVVLESQAVLVASRKSLIRRKGVLDATHEILERLEAHLRAS 315 (349)
Q Consensus 270 k~i--e~g~IleSsA~LIaN~~s~~~k~~~~~~i~~li~rl~~vl~Ar 315 (349)
+.+ .+ ......-.++.++.. . . ..++.+++.++......
T Consensus 256 ~~~~l~~-~~~~~~~~l~~~~~~-~-~----~~~~~f~~~l~~~~~~~ 296 (313)
T 2h98_A 256 LYIPILD-DDAYSPISLAVRNMD-H-S----NYIPKILACVQEVFATH 296 (313)
T ss_dssp EEEEBCS-TTCEEEEEEEEETTC-C-C----THHHHHHHHHHHHHHHT
T ss_pred EEEECCC-CCccceEEEEEcCCC-C-C----HHHHHHHHHHHHHhccc
Confidence 544 22 123345566666553 1 1 35677777777766543
No 101
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=58.57 E-value=17 Score=29.43 Aligned_cols=162 Identities=15% Similarity=0.039 Sum_probs=81.6
Q ss_pred eEEEeecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccC--cccchHHhhcCCc
Q 018852 127 LEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFE--NINSLRELAQMPQ 204 (349)
Q Consensus 127 vev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~--dv~sl~dL~~~~~ 204 (349)
+++......++...+.+|.+|+||+....- . .++. ...++..+++++++.+..+. ..-+++||.+.
T Consensus 35 i~i~~~~~~~~~~~l~~g~~Dl~i~~~~~~---~---~~~~----~~~l~~~~~~~v~~~~~pl~~~~~~~~~~L~~~-- 102 (219)
T 3jv9_A 35 LMLEENYTHTLTESLKRGDVDAIIVAEPFQ---E---PGIV----TEPLYDEPFFVIVPKGHSFEELDAVSPRMLGEE-- 102 (219)
T ss_dssp EEEEEECHHHHHHHHHHTSSSEEEEESSCC---C---TTEE----EEEEEEEEEEEEEETTCGGGTSSSCCSSTTSSS--
T ss_pred EEEEeCCcHHHHHHHHcCCCCEEEEcCCCC---C---CCee----EEEeeeceEEEEEeCCCCcccCCCCCHHHhcCC--
Confidence 555556778899999999999999976421 1 2222 23467889999998874322 22244555432
Q ss_pred cCCCCCcEEEcCCCc----cHHHHHHh-----cCCceEEEEecCCccccc---cCCCcceeeeecccchhhHhhCCcEEe
Q 018852 205 WTAEKPLRVATGFTY----LGPKFMKD-----NGLKHVVFSTADGALEAA---PAMGIADAILDLVSSGTTLRENNLKEI 272 (349)
Q Consensus 205 ~~~~~~lRVATkYPn----lar~yf~~-----~Gi~~v~Ii~l~GSvElA---P~lGlAD~IVDIVsTGtTLraNgLk~i 272 (349)
.-|...... ...++|.+ .|+.. .++.-..+.+.+ ..-|..=+|+--..... ++..+|+.+
T Consensus 103 ------~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~v~~g~gi~~~p~~~~~~-~~~~~l~~~ 174 (219)
T 3jv9_A 103 ------QVLLLTEGNCMRDQVLSSCSELAAKQRIQGL-TNTLQGSSINTIRHMVASGLAISVLPATALTE-NDHMLFSII 174 (219)
T ss_dssp ------CEEEECTTCHHHHHHHHHCSTTHHHHHHHTT-TSSCEESSHHHHHHHHHHTSCEEEEEGGGCCT-TCTTTEEEE
T ss_pred ------cEEEecCCccHHHHHHHHHHhhhhhhccCCC-CceEEeCCHHHHHHHHHcCCcEEehhHHHHHh-ccCCcEEEE
Confidence 123322222 33344433 22211 111111222222 11122223332222222 455688877
Q ss_pred cC-ceEEEEEEEEEeecchhhhhcCchhHHHHHHHHHHHHHh
Q 018852 273 EG-GVVLESQAVLVASRKSLIRRKGVLDATHEILERLEAHLR 313 (349)
Q Consensus 273 e~-g~IleSsA~LIaN~~s~~~k~~~~~~i~~li~rl~~vl~ 313 (349)
.- +........++.++..... ..++.+++.++..+.
T Consensus 175 ~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~l~~~~~ 211 (219)
T 3jv9_A 175 PFEGTPPSRRVVLAYRRNFVRP-----KALSAMKAAIMQSQL 211 (219)
T ss_dssp CCSSSCCEEEEEEEEETTCSCH-----HHHHHHHHHHHTSCC
T ss_pred ecCCCCcceeEEEEEecCcccc-----HHHHHHHHHHHhhcc
Confidence 52 2344556677776654322 356777777766543
No 102
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=58.04 E-value=3.4 Score=37.62 Aligned_cols=55 Identities=16% Similarity=0.224 Sum_probs=44.1
Q ss_pred EEEecCCCCchHHHHH-HHHHCCCccCCCCCCceEEecCCCCCeEEEeec--CCchhhhcccCceeeeeeccceec
Q 018852 85 RLGLPSKGRMAADTLD-LLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQR--PKDIVRKLLSGDLDLGIVGLDTVS 157 (349)
Q Consensus 85 rIALP~KGRL~e~t~~-LL~~aGi~~~~~~~R~L~~~~~~~p~vev~~vR--~~DIP~yV~~G~aDlGIvG~DvL~ 157 (349)
|||+|.+|...+-.++ +|++.|++ +++.++. +.|+...+..|.+|.+++...++.
T Consensus 98 ~Iav~~~gs~~~~ll~~~L~~~Gld------------------v~~~~~~~~~~~~~~al~~G~vDa~~~~eP~~~ 155 (283)
T 3hn0_A 98 ALYVFGNGTTPDILTRYYLGRQRLD------------------YPLNYAFNTAGEITQGILAGKVNRAVLGEPFLS 155 (283)
T ss_dssp CEECSSTTSHHHHHHHHHHHHHTCC------------------CCEECSCCSHHHHHHHHHHTSCSEEEECTTHHH
T ss_pred EEEecCCCCcHHHHHHHHHHHcCCc------------------eEEEEccCCHHHHHHHHHcCCCCEEEecccHHH
Confidence 7999988998888777 47888871 2345554 799999999999999999887754
No 103
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=55.92 E-value=7.4 Score=34.25 Aligned_cols=133 Identities=16% Similarity=0.113 Sum_probs=73.1
Q ss_pred eEEEeecCCchhhhcccCc-eeeeeeccc-e---ecccCCCCccceeecCCCCcccEEEEEEEeCCCccC--cccchHHh
Q 018852 127 LEVWFQRPKDIVRKLLSGD-LDLGIVGLD-T---VSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFE--NINSLREL 199 (349)
Q Consensus 127 vev~~vR~~DIP~yV~~G~-aDlGIvG~D-v---L~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~--dv~sl~dL 199 (349)
+++.+-...++-..++.|. +|+.+.+.. + +.+.+ ++..-....|..-+|++++|.+.... .+++++||
T Consensus 36 V~~~~~~s~~l~~~i~~g~~~Dv~~~a~~~~~~~l~~~g-----~~~~~~~~~~~~~~lvl~~~~~~~~~~~~i~~~~~l 110 (237)
T 3r26_A 36 VVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKK-----AIDTATRQTLLGNSLVVVAPKASVQKDFTIDSKTNW 110 (237)
T ss_dssp EEEEEECHHHHHHHHHHTCCCSEEECSSHHHHHHHHHTT-----CBCGGGCEEEEEECEEEEEESSCCCCCCCCSTTCCH
T ss_pred EEEEECCHHHHHHHHHcCCCceEEEECCHHHHHHHHHCC-----CCCCCceeeeEcceEEEEEeCCCCcccccccchHhH
Confidence 5566666778888898998 999998642 2 22333 11110123566778999999863211 23333333
Q ss_pred hcCCccCCCCCcEEEcCCCcc------HHHHHHhcCC----ceEEEEecCCccccc--cCCCcceeeeecccchhhHhhC
Q 018852 200 AQMPQWTAEKPLRVATGFTYL------GPKFMKDNGL----KHVVFSTADGALEAA--PAMGIADAILDLVSSGTTLREN 267 (349)
Q Consensus 200 ~~~~~~~~~~~lRVATkYPnl------ar~yf~~~Gi----~~v~Ii~l~GSvElA--P~lGlAD~IVDIVsTGtTLraN 267 (349)
.... +..|||.-.|+. ++++|++.|+ +. .++...+.-++. -..|-+|+-+ +.....+...
T Consensus 111 ~~l~-----~~~~iai~~p~~~p~G~~a~~~l~~~g~~~~l~~-~~~~~~~~~~~~~~v~~Ge~d~gi--~~~s~a~~~~ 182 (237)
T 3r26_A 111 TSLL-----NGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSP-KLAPAEDVRGALALVERNEAPLGI--VYGSDAVASK 182 (237)
T ss_dssp HHHH-----TTCCEEEECTTTCHHHHHHHHHHHHTTCHHHHGG-GEEEESSHHHHHHHHHTTSSSEEE--EEHHHHHHCS
T ss_pred HHhc-----CCCeEEEeCCCCCChHHHHHHHHHHcCCHHHhhh-cEEecCCHHHHHHHHHcCCCCEEE--EEecccccCC
Confidence 2210 025888888874 5677888886 11 233333322322 3346666443 2333334456
Q ss_pred CcEEe
Q 018852 268 NLKEI 272 (349)
Q Consensus 268 gLk~i 272 (349)
+++++
T Consensus 183 ~~~~v 187 (237)
T 3r26_A 183 GVKVV 187 (237)
T ss_dssp SEEEE
T ss_pred CCeEE
Confidence 77665
No 104
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=53.48 E-value=6 Score=35.74 Aligned_cols=122 Identities=11% Similarity=0.137 Sum_probs=72.4
Q ss_pred CCCCceEEEecCCCCchH---HHHHHHHH-CCCccCCCCCCceEEecCCCCCeEEEeecCCchhhhcccCc-eeeeeecc
Q 018852 79 SERDEIRLGLPSKGRMAA---DTLDLLKD-CQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGD-LDLGIVGL 153 (349)
Q Consensus 79 ~~~~~LrIALP~KGRL~e---~t~~LL~~-aGi~~~~~~~R~L~~~~~~~p~vev~~vR~~DIP~yV~~G~-aDlGIvG~ 153 (349)
...+.|+|+-. +.+.+ +..+.|++ .|+ .+++.+--..++-..++.|. +|+.+.+.
T Consensus 20 ~aa~~L~V~~a--~s~~~~~~~l~~~Fe~~~gi------------------~V~~~~~~Sg~l~~qi~~g~~~DV~~sa~ 79 (253)
T 3gzg_A 20 HMTAPVTVFAA--ASLKESMDEAATAYEKATGT------------------PVRVSYAASSALARQIEQGAPADVFLSAD 79 (253)
T ss_dssp --CCCEEEEEE--GGGHHHHHHHHHHHHHHHSC------------------CEEEEEECHHHHHHHHHTTCCCSEEECSS
T ss_pred ccCCCEEEEEe--cChHHHHHHHHHHHHHHhCC------------------eEEEEECChHHHHHHHHcCCCceEEEECC
Confidence 34456999987 55554 33334433 122 25566666778888888887 99999975
Q ss_pred -ce---ecccCCCCccceeecCCCCcccEEEEEEEeCCCcc--CcccchHHhhcCCccCCCCCcEEEcCCCcc------H
Q 018852 154 -DT---VSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIF--ENINSLRELAQMPQWTAEKPLRVATGFTYL------G 221 (349)
Q Consensus 154 -Dv---L~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~--~dv~sl~dL~~~~~~~~~~~lRVATkYPnl------a 221 (349)
++ +.+.+. +..-..-.|..-+|++++|++... .++++ +||..... ...|||.-.|+. +
T Consensus 80 ~~~~~~l~~~gl-----~~~~~~~~~a~~~lvl~~~~~~~~~~~~i~~-~dl~~l~~----~~~~iai~dP~~~p~G~~a 149 (253)
T 3gzg_A 80 LEWMDYLQQHGL-----VLPAQRHNLLGNTLVLVAPASSKLRVDPRAP-GAIAKALG----ENGRLAVGQTASVPAGSYA 149 (253)
T ss_dssp HHHHHHHHHTTS-----SCGGGEEEEEEECEEEEEETTCCCCCCTTST-THHHHHTT----TTCCEEEECTTTSHHHHHH
T ss_pred HHHHHHHHHCCC-----cCCCcceeEEeeEEEEEEECCCCcccCCCCH-HHHHHhhc----CCCEEEEeCCCCCchHHHH
Confidence 33 333331 110001346677899999987421 35776 55543210 136899988873 5
Q ss_pred HHHHHhcCC
Q 018852 222 PKFMKDNGL 230 (349)
Q Consensus 222 r~yf~~~Gi 230 (349)
+++|++.|+
T Consensus 150 ~~~l~~~g~ 158 (253)
T 3gzg_A 150 AAALRKLGQ 158 (253)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHcCc
Confidence 677888776
No 105
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=53.46 E-value=8.2 Score=35.05 Aligned_cols=155 Identities=11% Similarity=0.085 Sum_probs=89.9
Q ss_pred hhhhcccCceeeeeeccce-----ecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccCCCCCc
Q 018852 137 IVRKLLSGDLDLGIVGLDT-----VSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPL 211 (349)
Q Consensus 137 IP~yV~~G~aDlGIvG~Dv-----L~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~~~~l 211 (349)
+-.-++.|.+|+...+.-- +.+.-. .++ +.+..++ ...+..++||++ .+++|++||+..+. +.
T Consensus 42 ~~~al~~G~iD~~~e~w~~~~~~~~~~~~~--~~l-~~l~~~~-~~~~~~l~Vp~~---~~i~si~DL~~~~~-----g~ 109 (256)
T 3l6g_A 42 AWQTVANGQADGMVSAWLPNTHKTQWQKYG--KSV-DLLGPNL-KGAKVGFVVPSY---MNVNSIEDLTNQAN-----KT 109 (256)
T ss_dssp HHHHHHTTSSSEEEEEEETTTTHHHHHHHG--GGE-EEEEEEE-EEEEEEEEEETT---SCCCBGGGCSSGGG-----GE
T ss_pred HHHHHHCCCCeEEEcccCCcccHHHHHHhC--Cce-EEccccC-CCceEEEEECCc---cCCCCHHHHHHhcC-----Ce
Confidence 4457788999997655211 111110 222 2333333 346789999997 48999999964221 22
Q ss_pred EEEcC--CC--ccHHHHHHhc-CCceEEEEecCCc-----cccccCCCcceeeeecccchhhHhhCCcEEecCceE-E--
Q 018852 212 RVATG--FT--YLGPKFMKDN-GLKHVVFSTADGA-----LEAAPAMGIADAILDLVSSGTTLRENNLKEIEGGVV-L-- 278 (349)
Q Consensus 212 RVATk--YP--nlar~yf~~~-Gi~~v~Ii~l~GS-----vElAP~lGlAD~IVDIVsTGtTLraNgLk~ie~g~I-l-- 278 (349)
.++-. +. .+..+.++.- |++.++++..+++ +..|-.-|-. .+++.=+|=-.+.+.+|+.++|..= +
T Consensus 110 ~~g~~~G~~~~~~~~~~l~~y~gL~~~~~v~~s~~~m~~~l~~A~~~g~~-~v~~~w~p~~~~~~~~l~~LeDpk~~~~~ 188 (256)
T 3l6g_A 110 ITGIEPGAGVMAASEKTLNSYDNLKDWKLVPSSSGAMTVALGEAIKQHKD-IVITGWSPHWMFNKYDLKYLADPKGTMGT 188 (256)
T ss_dssp EECCCTTCHHHHHHHHHHTTCGGGTTCEEECCCHHHHHHHHHHHHHTTCC-CCEEEEESCTHHHHSCEEECBCTTCTTCC
T ss_pred EEecCCCchhhHHHHHHHHhcCCCCCeEEecCCHHHHHHHHHHHHHCCCC-EEEEeecCchhhhhcCeEEecCCccccCC
Confidence 33332 21 1235566666 7744677643222 1223223333 3456667777888999999987543 3
Q ss_pred EEEEEEEeecchhhhhcCchhHHHHHHHHH
Q 018852 279 ESQAVLVASRKSLIRRKGVLDATHEILERL 308 (349)
Q Consensus 279 eSsA~LIaN~~s~~~k~~~~~~i~~li~rl 308 (349)
...+..++|+...+..+ .+.++++++
T Consensus 189 ~~~~~~vvr~~~~~~~P----~~~~~L~~~ 214 (256)
T 3l6g_A 189 SENINTIVRKGLKKENP----EAYKVLDKF 214 (256)
T ss_dssp CEEEEEEEETTHHHHCH----HHHHHHHHC
T ss_pred cceEEEeechhHHHHCh----HHHHHHHhc
Confidence 57788889888766554 456666665
No 106
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=47.50 E-value=26 Score=33.55 Aligned_cols=62 Identities=10% Similarity=0.077 Sum_probs=48.2
Q ss_pred CCceEEEecCCCCchHHHHH-HHHHCCCccCCCCCCceEEecCCCCCeEEEeecCCchhhhcccCceeeeeecccee
Q 018852 81 RDEIRLGLPSKGRMAADTLD-LLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTV 156 (349)
Q Consensus 81 ~~~LrIALP~KGRL~e~t~~-LL~~aGi~~~~~~~R~L~~~~~~~p~vev~~vR~~DIP~yV~~G~aDlGIvG~DvL 156 (349)
..--|||++..|...+-.++ +|++.|++.. .+++++.+.+.+++.-+..|.+|..+++.-|.
T Consensus 153 LkGk~iav~~~gs~~~~~l~~~L~~~Gl~~~--------------~dv~~v~~~~~~~~~aL~~G~vDa~~~~eP~~ 215 (417)
T 2g29_A 153 VTDPKVAMTFPGGTHDMWIRYWLAAGGMEPG--------------KDFSTIVVPPAQMVANVKVNAMESFCVGEPWP 215 (417)
T ss_dssp SSSCEEEESSTTSHHHHHHHHHHHHTTCCBT--------------TTBEEEECCGGGHHHHHHTTSCSEEEEETTHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHcCCCCC--------------CceEEEECCHHHHHHHHHcCCCCEEEeCCCHH
Confidence 33579999867888877665 7889998521 13667777888999999999999999987664
No 107
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=46.06 E-value=55 Score=29.76 Aligned_cols=64 Identities=14% Similarity=0.134 Sum_probs=46.8
Q ss_pred CCCC-CceEEEecCCCCchHHHHH-HHHHCCCccCCCCCCceEEecCCCCCeEEEeecCCchhhhcccCceeeeeeccce
Q 018852 78 ISER-DEIRLGLPSKGRMAADTLD-LLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDT 155 (349)
Q Consensus 78 ~~~~-~~LrIALP~KGRL~e~t~~-LL~~aGi~~~~~~~R~L~~~~~~~p~vev~~vR~~DIP~yV~~G~aDlGIvG~Dv 155 (349)
+.+. +--|||++..|...+-.++ +|++.|++.. ++++..+.+.|...-+..|.+|..++..-+
T Consensus 148 ~~DL~kGk~i~v~~~~s~~~~~~~~~l~~~Gl~~~---------------dv~~~~~~~~~~~~al~~G~vDa~~~~~p~ 212 (341)
T 3un6_A 148 FNNNGDDYHFGIPHRYSTHYLLLEELRKQLKIKPG---------------HFSYHEMSPAEMPAALSEHRITGYSVAEPF 212 (341)
T ss_dssp CCSSSSCEEEEESCSSSHHHHHHHHHHHHTTCCTT---------------SEEEEECCGGGHHHHHHTTSCSEEEEETTH
T ss_pred HHHhCCCCEEEECCCCCHHHHHHHHHHHHcCCCHH---------------HeEEEEcChHHHHHHHHcCCCCEEEecCCH
Confidence 4444 4579999955566655555 8999998521 356666677899999999999999887665
Q ss_pred e
Q 018852 156 V 156 (349)
Q Consensus 156 L 156 (349)
.
T Consensus 213 ~ 213 (341)
T 3un6_A 213 G 213 (341)
T ss_dssp H
T ss_pred H
Confidence 4
No 108
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=44.34 E-value=40 Score=31.18 Aligned_cols=87 Identities=13% Similarity=0.117 Sum_probs=51.8
Q ss_pred CcccchHHhhcCCccCCCCCcEEEcCCCccHHHHHHhcCCceEEEEecCCccccccC--CCcceeeeecccchhhHhhCC
Q 018852 191 ENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPA--MGIADAILDLVSSGTTLRENN 268 (349)
Q Consensus 191 ~dv~sl~dL~~~~~~~~~~~lRVATkYPnlar~yf~~~Gi~~v~Ii~l~GSvElAP~--lGlAD~IVDIVsTGtTLraNg 268 (349)
.+|++++||++ +||.|--..+..++|+..|.. .+.+. .-|+... .|..|+..-- ..++..++
T Consensus 133 ~pI~s~~DlkG---------lKiRv~~~~~~~~~~~alGa~---pv~m~-~~Evy~ALq~G~vDg~~~~---~~~~~~~~ 196 (312)
T 2xwv_A 133 RAINSIADMKG---------LKLRVPNAATNLAYAKYVGAS---PTPMA-FSEVYLALQTNAVDGQENP---LAAVQAQK 196 (312)
T ss_dssp SCCCSGGGGTT---------CEEEECSCHHHHHHHHHHTCE---EEECC-GGGHHHHHHTTSSSEEEEE---HHHHHHTT
T ss_pred CCcCCHHHhCC---------CEEEeCCCHHHHHHHHHcCCe---eeecC-HHHHHHHHHcCCcceEecc---HHHHhhcc
Confidence 58999999986 455554333557899999963 34432 3565554 3666665443 34445555
Q ss_pred cEEec-----CceEEEEEEEEEeecchhhhh
Q 018852 269 LKEIE-----GGVVLESQAVLVASRKSLIRR 294 (349)
Q Consensus 269 Lk~ie-----~g~IleSsA~LIaN~~s~~~k 294 (349)
+.++. .+.. -+...+++|+..|..-
T Consensus 197 ~~ev~ky~~~~~~~-~~~~~~~~n~~~~~~L 226 (312)
T 2xwv_A 197 FYEVQKFLAMTNHI-LNDQLYLVSNETYKEL 226 (312)
T ss_dssp GGGSCSEEECCCCC-EEEEEEEEEHHHHTTS
T ss_pred hhhccceEEecCcc-ccceEEEEeHHHHhhC
Confidence 54433 1111 2345688999988653
No 109
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=43.91 E-value=25 Score=28.45 Aligned_cols=101 Identities=16% Similarity=0.135 Sum_probs=54.8
Q ss_pred CCeEEEe--ecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccC--c-ccchHHh
Q 018852 125 SNLEVWF--QRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFE--N-INSLREL 199 (349)
Q Consensus 125 p~vev~~--vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~--d-v~sl~dL 199 (349)
|++++.+ ....++-..+.+|.+|+||+.... .. .++. -..++.-+++++++.+..+. + .-+++||
T Consensus 32 P~i~i~l~~~~~~~l~~~l~~g~~Dl~i~~~~~-~~-----~~l~----~~~l~~~~~~~v~~~~hpl~~~~~~~~~~~l 101 (209)
T 2ql3_A 32 PRASVEFREDTQNRLRTQLEGGELDVAIVYDLD-LS-----PEWQ----TVPLMTREPMVVLGAEHPLAGVDGPVRLADL 101 (209)
T ss_dssp TTEEEEEEECCHHHHHHHHHTTSCSEEEEESSS-CC-----TTEE----EEEEEEECCEEEEETTCGGGGCCSCBCGGGG
T ss_pred CCceEEEEECcHHHHHHHHHcCCccEEEEecCC-CC-----CCce----EEEeecCceEEEEeCCCccccCCCCcCHHHH
Confidence 4454443 344567789999999999986421 11 1221 12345677788888764222 1 2356776
Q ss_pred hcCCccCCCCCcEEEcC---CCccHHHHHHhcCCceEEEEecCCcccc
Q 018852 200 AQMPQWTAEKPLRVATG---FTYLGPKFMKDNGLKHVVFSTADGALEA 244 (349)
Q Consensus 200 ~~~~~~~~~~~lRVATk---YPnlar~yf~~~Gi~~v~Ii~l~GSvEl 244 (349)
.+. + -|... +.....++|++.|+. ..+..-..+.+.
T Consensus 102 ~~~-------~-~i~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~ 140 (209)
T 2ql3_A 102 AEH-------P-MVLLDAPPSTNHAMDVCREAGFA-PRVAYRTANFET 140 (209)
T ss_dssp TTS-------C-EEEECCTTHHHHHHHHHHHHTCC-CCEEEEESCHHH
T ss_pred hCC-------C-EEeeCChhHHHHHHHHHHHcCCC-CceEEEECCHHH
Confidence 642 1 22221 123455678888875 343332344444
No 110
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=39.28 E-value=25 Score=34.21 Aligned_cols=60 Identities=8% Similarity=0.061 Sum_probs=46.7
Q ss_pred ceEEEecCCCCchHHHHH-HHHHCCCccCCCCCCceEEecCCCCCeEEEeecCCchhhhcccCceeeeeecccee
Q 018852 83 EIRLGLPSKGRMAADTLD-LLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTV 156 (349)
Q Consensus 83 ~LrIALP~KGRL~e~t~~-LL~~aGi~~~~~~~R~L~~~~~~~p~vev~~vR~~DIP~yV~~G~aDlGIvG~DvL 156 (349)
.+|||++.+|...+-.+. +|++.|++.. .+++++.+.+.+.+.-+..|.+|..+++.-|.
T Consensus 163 ~~~Iav~~~gs~~~~~l~~~L~~~Gl~p~--------------~DV~~v~~~~~~~~~aL~~G~iDa~~~~eP~~ 223 (429)
T 2i49_A 163 KFKAAHTFPNVNQDFWIRYWFAAGGVDPD--------------TDIDLLAVPPAETVQGMRNGTMDAFSTGDPWP 223 (429)
T ss_dssp CCEEEESSTTSHHHHHHHHHHHHTTCCTT--------------TTSEEEECCHHHHHHHHHHTCCCEEEEETTHH
T ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCCCC--------------CcEEEEECChHHHHHHHHcCCccEEEeccchH
Confidence 479999877888766654 7888998531 13566677788899999999999999987765
No 111
>3o66_A Glycine betaine/carnitine/choline ABC transporter; structural genomics, PSI-2, protein structure initiative; HET: PGE; 1.86A {Staphylococcus aureus subsp} SCOP: c.94.1.0
Probab=35.25 E-value=7.3 Score=36.34 Aligned_cols=150 Identities=16% Similarity=0.228 Sum_probs=84.7
Q ss_pred ecCCCCcccEEEEEEEeCCCc-cCcccchHHhhcCCccCCCCCcEEEcC----------CCccHHHHHHhcCCceE-EEE
Q 018852 169 VHDALDYGDCRLSLAIPKYGI-FENINSLRELAQMPQWTAEKPLRVATG----------FTYLGPKFMKDNGLKHV-VFS 236 (349)
Q Consensus 169 ~l~dLgfG~CRLvvAvP~~~~-~~dv~sl~dL~~~~~~~~~~~lRVATk----------YPnlar~yf~~~Gi~~v-~Ii 236 (349)
.+..++|+. +..+|||++.. -.+++|++||..... .++++.. ||.+.+ .-|++ + .+.
T Consensus 106 ~l~~~~~~n-~~~laV~~~~a~~~~l~sisDL~~~~~-----~~~~g~~~ef~~r~gdG~~~l~~----~Ygl~-~~~~~ 174 (282)
T 3o66_A 106 FFDSYGFAN-TYAFMVTKETAKKYHLETVSDLAKHSK-----DLRLGMDSSWMNRKGDGYEGFKK----EYGFD-FGTVR 174 (282)
T ss_dssp ECCCCSCBC-CEEEEECHHHHHHHTCSBSGGGTTTGG-----GCEEEEEGGGCC--CCSHHHHHH----HHCCC-CSEEE
T ss_pred EeccCCcCC-eEEEEEeHHHHhHcCCCCHHHHHhccc-----ceEEecCcccccCchhHHHHHHH----HcCCC-Ccccc
Confidence 344566764 78999999631 017899999975321 2455533 333433 33653 2 233
Q ss_pred ecC-CccccccCCCcceeeeecccchhhHhhCCcEEecCce--EEEEEEEEEeecchhhhhcCchhHHHHHHHHHHHHHh
Q 018852 237 TAD-GALEAAPAMGIADAILDLVSSGTTLRENNLKEIEGGV--VLESQAVLVASRKSLIRRKGVLDATHEILERLEAHLR 313 (349)
Q Consensus 237 ~l~-GSvElAP~lGlAD~IVDIVsTGtTLraNgLk~ie~g~--IleSsA~LIaN~~s~~~k~~~~~~i~~li~rl~~vl~ 313 (349)
.++ |.+.-|-.-|-.| +++.-+|=--+.+.+|+.++|.. .-..+++.++++......+ .+.++++++.+.+.
T Consensus 175 ~~d~g~~~~A~~~~~~~-v~~~wsp~~~~~~~dL~~LeD~k~~fp~~~~~~vvr~~~~~~~P----~~~~~L~~l~~~lt 249 (282)
T 3o66_A 175 PMQIGLVYDALNTEKLD-VALGYSTDGRIAAYDLKVLKDDKQFFPPYAASAVATNELLRQHP----ELKTTINKLTGKIS 249 (282)
T ss_dssp EECGGGHHHHHHTTSCS-EEEEETTCHHHHHTTCEECBCTTCCSCCCBEEEEEEHHHHHHCT----HHHHHHHTTTTCCC
T ss_pred ccCHHHHHHHHHcCCCe-EEEEeCCCchhhhcCceEcCCCcccccccceeEEEcHHHHhHCH----HHHHHHHHHhccCC
Confidence 333 4455454445443 56677777789999999998632 2235567788877665544 46677777643333
Q ss_pred hcCe--eEEEEecCCCCHHHHHH
Q 018852 314 ASGQ--FTVTANMRGNSAEEVAE 334 (349)
Q Consensus 314 Ar~~--~~v~~N~p~~~l~~v~~ 334 (349)
.... .+-.++..+...++|++
T Consensus 250 ~~~m~~ln~~v~~~~~~~~~vA~ 272 (282)
T 3o66_A 250 TSEMQRLNYEADGKGKEPAVVAE 272 (282)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHH
Confidence 2211 11122334556666654
No 112
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=34.92 E-value=52 Score=28.65 Aligned_cols=161 Identities=11% Similarity=0.008 Sum_probs=81.6
Q ss_pred CeEEEeecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCcc---CcccchHHhhcC
Q 018852 126 NLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIF---ENINSLRELAQM 202 (349)
Q Consensus 126 ~vev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~---~dv~sl~dL~~~ 202 (349)
.+++......++...+.+|.+|+||+....-. .++. -..++..+++++++.+... .+.-+++||.+.
T Consensus 121 ~i~~~~~~~~~~~~~l~~g~~D~~i~~~~~~~------~~l~----~~~l~~~~~~~v~~~~~~~~~~~~~~~~~dL~~~ 190 (303)
T 3isp_A 121 LLDVRIEDQDHSARLLREGVAMGAVTTERNPV------PGCR----VHPLGEMRYLPVASRPFVQRHLSDGFTAAAAAKA 190 (303)
T ss_dssp EEEEEECCHHHHHHHHHTTSCSEEEESCCSCC------TTEE----EEEEEEEEEEEEECHHHHHHHCTTCSCTTTTTTS
T ss_pred eEEEEecChHHHHHHHHcCcceEEEecCCCCC------CCeE----EEEccceeEEEEecchHhhhccccCCCHhHhccC
Confidence 46666667777899999999999998754211 2222 2345788889888775211 112255666543
Q ss_pred CccCCCCCcEEEcC-CCccHHHHHH---hcCCceEEEEecCCcccccc---CCCcceeeeecccchhhHhhCCcEEecCc
Q 018852 203 PQWTAEKPLRVATG-FTYLGPKFMK---DNGLKHVVFSTADGALEAAP---AMGIADAILDLVSSGTTLRENNLKEIEGG 275 (349)
Q Consensus 203 ~~~~~~~~lRVATk-YPnlar~yf~---~~Gi~~v~Ii~l~GSvElAP---~lGlAD~IVDIVsTGtTLraNgLk~ie~g 275 (349)
+. |... .......|++ +.|+.. ++.--.+.++.- .-|..=+|+--...-.-++...|+.+...
T Consensus 191 ~~--------i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~g~Gi~~lp~~~~~~~~~~~~l~~l~~~ 260 (303)
T 3isp_A 191 PS--------LAWNRDDGLQDMLVRKAFRRAITR--PTHFVPTTEGFTAAARAGLGWGMFPEKLAASPLADGSFVRVCDI 260 (303)
T ss_dssp CB--------CCSSTTCCHHHHHHHHHHSSCCCC--CBCCCCSHHHHHHHHHTTSCBEEEEHHHHHHHHHHSSCEESSSC
T ss_pred Cc--------eecCCCCcHHHHHHHHHhhcccCC--ceEEECCHHHHHHHHHhCCeEEeccHHHHhhhhcCCCeEEecCC
Confidence 21 1111 1122233333 445542 121223333221 11221123322222234556778888743
Q ss_pred eEEEEEEEEEeecchhhhhcCchhHHHHHHHHHHHHHhh
Q 018852 276 VVLESQAVLVASRKSLIRRKGVLDATHEILERLEAHLRA 314 (349)
Q Consensus 276 ~IleSsA~LIaN~~s~~~k~~~~~~i~~li~rl~~vl~A 314 (349)
. ..-.++.++..... ..++.|++.|+...+.
T Consensus 261 ~---~~~~l~~~~~~~~~-----~~~~~f~~~l~~~~~~ 291 (303)
T 3isp_A 261 H---LDVPLYWQCWKLDS-----PIIARITDTVRAAASG 291 (303)
T ss_dssp C---EEEEEEEEEESSCC-----HHHHHHHHHHHHHTTT
T ss_pred C---CccceEEecCCCCC-----hHHHHHHHHHHHHHHH
Confidence 3 45556655543221 3567777777776644
No 113
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=34.35 E-value=38 Score=30.36 Aligned_cols=97 Identities=11% Similarity=0.107 Sum_probs=56.0
Q ss_pred eEEEeecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcC----
Q 018852 127 LEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQM---- 202 (349)
Q Consensus 127 vev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~---- 202 (349)
+.+...-..++...+.+|.+|+|++....-.+......++ ....|+.-.|+++++.+..+..+ ++++|+..
T Consensus 34 i~v~~~~S~~~~~~l~~g~~Dig~~~~~~~~~e~~~~~~l----~~~~i~~d~lvvvv~~~~p~~~l-t~~~L~~if~G~ 108 (264)
T 4ecf_A 34 INVQGGGTGTGLSQIQEGAVQIGNSDLFAGEQKGINARQL----VDHRVAVVGITPIVNKKVGVKNL-STNQLIKIFTGQ 108 (264)
T ss_dssp EEEEEECHHHHHHHHHHTSSSEEEESSCGGGSTTCCGGGE----ECCEEEEEEEEEEECTTSSCSEE-CHHHHHHHHTTS
T ss_pred EEEEeCCCHHHHHHHHcCCCchhhccCCCChhHHhhccCC----EEEEEEEEEEEEEEcCCCccccc-CHHHHHHHHCCC
Confidence 3444557788999999999999999754322111111223 24678888999999887543222 45666542
Q ss_pred -CccCC----CCCc-EEEcCCCccHHHHHHhc
Q 018852 203 -PQWTA----EKPL-RVATGFTYLGPKFMKDN 228 (349)
Q Consensus 203 -~~~~~----~~~l-RVATkYPnlar~yf~~~ 228 (349)
..|+. +.++ -|..+--.=++++|.+.
T Consensus 109 i~~W~~l~~~~~~i~~i~r~~gSgtr~~f~~~ 140 (264)
T 4ecf_A 109 ITNWKEVGGADQSIVLINRAQGSGTRATFEQF 140 (264)
T ss_dssp CCBGGGGTSCSCBCEEEEECTTCHHHHHHHHH
T ss_pred CcccccCCCCCCeeEEeccCCCCcHHHHHHHH
Confidence 22322 1222 34444334466777663
No 114
>3r6u_A Choline-binding protein; substrate binding protein, ABC-transporter, extracellular, transport protein; 1.61A {Bacillus subtilis} SCOP: c.94.1.0 PDB: 3ppq_A 3ppo_A* 3ppp_A 3ppn_A 3ppr_A*
Probab=34.06 E-value=5.3 Score=37.33 Aligned_cols=162 Identities=11% Similarity=0.124 Sum_probs=89.2
Q ss_pred eecCCCCcccEEEEEEEeCCCcc-CcccchHHhhcCCccCCCCCcEEEcCCCccH------HHHHHhcCCceE-EEEecC
Q 018852 168 IVHDALDYGDCRLSLAIPKYGIF-ENINSLRELAQMPQWTAEKPLRVATGFTYLG------PKFMKDNGLKHV-VFSTAD 239 (349)
Q Consensus 168 ~~l~dLgfG~CRLvvAvP~~~~~-~dv~sl~dL~~~~~~~~~~~lRVATkYPnla------r~yf~~~Gi~~v-~Ii~l~ 239 (349)
+.+..++|+. +..+|||++..- .+++|++||+.... .++++...--.. ..+.+.-|++ + .+..++
T Consensus 106 ~~l~~~~~~~-~~~laV~~~~a~~~~l~sisDL~~~~~-----~~~~g~~~ef~~r~G~G~~~l~~~YGl~-~~~~~~~~ 178 (284)
T 3r6u_A 106 KWYDSYGFDN-TYAFTVSKELADQYHLETVSDVKKWAP-----QLKLGVDNYWMKLKGNGYQDFTKTYGMT-FGGTYPMQ 178 (284)
T ss_dssp EECCCCSCBC-CEEEEEEHHHHHHHTCCBSGGGGGGGG-----GCEEEECTTGGGCSSSSHHHHHHHHCCC-CSEEEECC
T ss_pred EEeccCCcCC-eEEEEEeHHHHhHcCCCCHHHHHhhhh-----ceeeccCcccccCchhHHHHHHHHcCCC-cccccccC
Confidence 3445677775 889999997310 17899999975321 256655431111 1233344664 3 233333
Q ss_pred C-ccccccCCCcceeeeecccchhhHhhCCcEEecCc--eEEEEEEEEEeecchhhhhcCchhHHHHHHHHHHHHHhhcC
Q 018852 240 G-ALEAAPAMGIADAILDLVSSGTTLRENNLKEIEGG--VVLESQAVLVASRKSLIRRKGVLDATHEILERLEAHLRASG 316 (349)
Q Consensus 240 G-SvElAP~lGlAD~IVDIVsTGtTLraNgLk~ie~g--~IleSsA~LIaN~~s~~~k~~~~~~i~~li~rl~~vl~Ar~ 316 (349)
. .+.-|-.-|-. .+++.=+|=--+.+.+|+.++|. ..-..+++.++++......+ .+.++++++.+.+....
T Consensus 179 ~g~~~~A~~~~~~-~v~~~wsp~~~~~~~dL~~LeD~k~~fp~~~v~~vvr~~~~~~~P----~~~~~L~~l~~~lt~~~ 253 (284)
T 3r6u_A 179 IGLVYDAVKSGKM-DIVLAYSTDGRIKSYGLKMLKDDKQFFPPYDCSPVVPEKVLKEHP----ELEGIIKKMLGKIDTAT 253 (284)
T ss_dssp GGGHHHHHHHTSC-SEEEEETTCHHHHHTTEEECBCTTCCSCCCBEEEEEEHHHHHHST----THHHHHHTTTTCCCHHH
T ss_pred HHHHHHHHHcCCC-eEEEEeCCCchhhcCCceEcCCCcccCCccceeEEEcHHhhhHCH----HHHHHHHHHHccCCHHH
Confidence 2 33333333333 35667777778899999999872 22235677888877766555 45677777764333222
Q ss_pred eeEEE--EecCCCCHHHHHH-Hhccccc
Q 018852 317 QFTVT--ANMRGNSAEEVAE-RILSQTS 341 (349)
Q Consensus 317 ~~~v~--~N~p~~~l~~v~~-~~~~~~~ 341 (349)
.-.++ ++..+...++|++ .|.+|+.
T Consensus 254 m~~ln~~v~~~~~~~~~vA~~wL~~~gl 281 (284)
T 3r6u_A 254 MQELNYEVDGNLKEPSVVAKEYLEKHRY 281 (284)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHcCC
Confidence 22222 2334556666654 4444444
No 115
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=30.46 E-value=39 Score=30.13 Aligned_cols=156 Identities=16% Similarity=0.080 Sum_probs=85.0
Q ss_pred CchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCc----------------------cCc
Q 018852 135 KDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGI----------------------FEN 192 (349)
Q Consensus 135 ~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~----------------------~~d 192 (349)
..+-..+..|.+|+++.+.-.-.|.. +.+.. --+|.....++.++.+.. -..
T Consensus 81 ~~~~~~l~~g~~D~~~~~~~~t~eR~----~~~~f--s~py~~~~~~~~~~~~~~~~~~~~~~~~pf~~~p~tv~~~~~~ 154 (312)
T 1yae_A 81 NGMVRELIDHKADLAVAPLAITYVRE----KVIDF--SKPFMTLGISILYRKPNGTNPGVFSFLNGGSLVPRGSERMESP 154 (312)
T ss_dssp CSHHHHHHTTSCSEECSSCBCCHHHH----HHEEE--EEEEEEECEEEEEEC----------------------------
T ss_pred hHHHHHHhCCCcCEEeecceechhhc----ceEEe--cceeeecceEEEEeCCccccccceeeecccccCCcccccccCC
Confidence 45778899999999987755544542 11211 124556667777776521 046
Q ss_pred ccchHHhhcCCccCCCCCcEEEcCCCccHHHHHHhcCCce-----------EEEEecCCccccc--cCCCcceeeeeccc
Q 018852 193 INSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKH-----------VVFSTADGALEAA--PAMGIADAILDLVS 259 (349)
Q Consensus 193 v~sl~dL~~~~~~~~~~~lRVATkYPnlar~yf~~~Gi~~-----------v~Ii~l~GSvElA--P~lGlAD~IVDIVs 259 (349)
+.+++||.+. ...+||+--...+..||.+.++.. ..++.....-|+. -.-|- |+++.-..
T Consensus 155 i~~~~dL~g~------~~~~vg~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~-Da~i~~~~ 227 (312)
T 1yae_A 155 IDSADDLAKQ------TKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSD-YAFLMEST 227 (312)
T ss_dssp CCSHHHHHTC------SSSEEECBTTSHHHHHHHHCCBHHHHHHHHHHHHTHHHHCBSSHHHHHHHHHHSS-EEEEEEHH
T ss_pred CCCHHHHhhc------cCceEEEEeCChHHHHHHhccCchHHHHHHHHHhcCCCcccCCHHHHHHHHHcCC-cEEEeccH
Confidence 7899999852 135899644455567777754320 0122223222221 34577 88877555
Q ss_pred chhhHhhC--CcEEecCceEEEEEEEEEeecchhhhhcCchhHHHHHHHHHH
Q 018852 260 SGTTLREN--NLKEIEGGVVLESQAVLVASRKSLIRRKGVLDATHEILERLE 309 (349)
Q Consensus 260 TGtTLraN--gLk~ie~g~IleSsA~LIaN~~s~~~k~~~~~~i~~li~rl~ 309 (349)
+...+.++ +|+++. ..+....-.+..++... .++.+++.+..|+
T Consensus 228 ~~~~~~~~~~~l~~~~-~~~~~~~~~~a~~k~~~-----l~~~in~~l~~l~ 273 (312)
T 1yae_A 228 TIEFVTQRNCNLTQIG-GLIDSKGYGVGTPMGSP-----YRDKITIAILQLQ 273 (312)
T ss_dssp HHHHHHTTCTTEEEES-SCSSCEEEEEEEETTCS-----SHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEec-ccccccceEEEEeCCCC-----cHHHHHHHHHHHH
Confidence 55554443 577774 13333445566666531 2345666666655
No 116
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=28.08 E-value=40 Score=27.03 Aligned_cols=166 Identities=13% Similarity=-0.003 Sum_probs=77.4
Q ss_pred CCCeEEEeecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCcc--CcccchHHhhc
Q 018852 124 LSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIF--ENINSLRELAQ 201 (349)
Q Consensus 124 ~p~vev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~--~dv~sl~dL~~ 201 (349)
.|++++.+.- .|....+.+|.+|+||+..+.- . .++. -..++.-+++++++.+... ...-+++||.+
T Consensus 33 ~P~v~l~i~~-~~~~~~l~~g~~D~~i~~~~~~-~-----~~~~----~~~l~~~~~~~v~~~~~~~~~~~~~~~~~L~~ 101 (213)
T 3hhf_B 33 YPHIRLSLVS-SEGYINLIERKVDIALRAGELD-D-----SGLR----ARHLFDSRFRVIASPEYLAKHGTPQSTEELAG 101 (213)
T ss_dssp CTTEEEEEEC-CSTTHHHHTTSSSEEEECC--C-C-----SSEE----EEEEEEECEEEEECHHHHHHHCCCSSGGGGGG
T ss_pred CCCcEEEEEe-CCcHHHHHhCCccEEEEEecCC-C-----ccce----EEeeecceEEEEeCHHHHHhcCCCCCHHHhcC
Confidence 3566666653 4444568999999999865421 1 2221 1335677888888765211 12235666664
Q ss_pred CCccCCCCCcEEEcCCCccHHH----HHHhcCCceEEEEecCCccccc---cCCCcceeeeecccchhhHhhCCcEEecC
Q 018852 202 MPQWTAEKPLRVATGFTYLGPK----FMKDNGLKHVVFSTADGALEAA---PAMGIADAILDLVSSGTTLRENNLKEIEG 274 (349)
Q Consensus 202 ~~~~~~~~~lRVATkYPnlar~----yf~~~Gi~~v~Ii~l~GSvElA---P~lGlAD~IVDIVsTGtTLraNgLk~ie~ 274 (349)
.+ -|......-.++ ++.+.|+. ..++.-..+.+++ ..-|..=+|+--...-.-++...|+.+..
T Consensus 102 ~~--------~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~g~Gi~~lp~~~~~~~~~~~~l~~~~~ 172 (213)
T 3hhf_B 102 HQ--------CLGFTEPGSLNTWAVLDAQGNPYK-ISPHFTASSGEILRSLCLSGCGIVCLSDFLVDNDIAEGKLIPLLA 172 (213)
T ss_dssp SC--------BCEESSCGGGGEEEEECTTSCEEE-CCCSSEESSHHHHHHHHHTTSCBEEEEHHHHHHHHHHTSSEEECT
T ss_pred CC--------eEEecCCCCccchhhhhCCCcccc-ccCceeeCCHHHHHHHHHcCCcEEEeeHHHhhHHHhcCCcEEecC
Confidence 31 111111111111 12222221 1111112233322 11122223433333334566677876643
Q ss_pred ceEE--EEEEEEEeecchhhhhcCchhHHHHHHHHHHHHHhh
Q 018852 275 GVVL--ESQAVLVASRKSLIRRKGVLDATHEILERLEAHLRA 314 (349)
Q Consensus 275 g~Il--eSsA~LIaN~~s~~~k~~~~~~i~~li~rl~~vl~A 314 (349)
.... ...-.++.++..... ..++.+++.|+..+..
T Consensus 173 ~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~l~~~~~~ 209 (213)
T 3hhf_B 173 EQTSDKTHPFNAVYYSDKAVN-----LRLRVFLDFLVEELGN 209 (213)
T ss_dssp TTBCCCCEEEEEEEEGGGGGC-----HHHHHHHHHHHHHC--
T ss_pred CCCCCceeeEEEEEcCCCCCC-----hHHHHHHHHHHHHhhh
Confidence 3333 356677776655332 3567777777766543
No 117
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=27.74 E-value=25 Score=33.26 Aligned_cols=21 Identities=29% Similarity=0.124 Sum_probs=16.7
Q ss_pred hhhhcccCceeeeeeccceec
Q 018852 137 IVRKLLSGDLDLGIVGLDTVS 157 (349)
Q Consensus 137 IP~yV~~G~aDlGIvG~DvL~ 157 (349)
....+..|.+|..++..-+..
T Consensus 210 ~~~aL~~G~vDA~~~~~p~~~ 230 (365)
T 2de3_A 210 QAAVLASGDVDALYSWLPWAG 230 (365)
T ss_dssp HHHHHHSSSCSEEEEEHHHHH
T ss_pred HHHHHhCCCcCEEEEcchhHH
Confidence 577899999999998765543
No 118
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=24.94 E-value=1e+02 Score=27.65 Aligned_cols=65 Identities=18% Similarity=0.284 Sum_probs=46.3
Q ss_pred CCCCCCceEEEecCCCCchHH-HHHHHHHCCCccCCCCCCceEEecCCCCCeEEEeecCCchhhhcccCceeeeeeccce
Q 018852 77 RISERDEIRLGLPSKGRMAAD-TLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDT 155 (349)
Q Consensus 77 ~~~~~~~LrIALP~KGRL~e~-t~~LL~~aGi~~~~~~~R~L~~~~~~~p~vev~~vR~~DIP~yV~~G~aDlGIvG~Dv 155 (349)
++.+..--|||++ .|...+. ...+|++.|++.. +++++.+.+.|+...+..|.+|.+++..-+
T Consensus 125 s~~DLkGk~i~v~-~gs~~~~~~~~~l~~~Gl~~~---------------~v~~v~~~~~~~~~al~~G~vDa~~~~~p~ 188 (324)
T 3ksx_A 125 TVADLKGKRIAFQ-KGSSAHNLLLRVLAKSGLSMR---------------DITPLYLSPANARAAFAAGQVDAWAIWDPW 188 (324)
T ss_dssp SGGGGTTCEEEEC-TTSHHHHHHHHHHHHTTCCGG---------------GSEEEECCHHHHHHHHHTTCCSEEEEETTH
T ss_pred CHHHhCCCEEEec-CCChHHHHHHHHHHHcCCCHH---------------HeEEEeCCHHHHHHHHHcCCCCEEEEccHH
Confidence 3444444689999 7887665 4567889998532 244555567889999999999998887655
Q ss_pred ec
Q 018852 156 VS 157 (349)
Q Consensus 156 L~ 157 (349)
..
T Consensus 189 ~~ 190 (324)
T 3ksx_A 189 YS 190 (324)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 119
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=24.45 E-value=50 Score=29.83 Aligned_cols=95 Identities=11% Similarity=0.050 Sum_probs=52.4
Q ss_pred CCCceEEEecCC-C-CchHHHHHHHHHC-CCccCCCCCCceEEecCCCCCeEEEeecCCchhhhcccCceeeeeecccee
Q 018852 80 ERDEIRLGLPSK-G-RMAADTLDLLKDC-QLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTV 156 (349)
Q Consensus 80 ~~~~LrIALP~K-G-RL~e~t~~LL~~a-Gi~~~~~~~R~L~~~~~~~p~vev~~vR~~DIP~yV~~G~aDlGIvG~DvL 156 (349)
+.+.||||.++- + .+..+.++-|++. | .+- +++. ++++......++-..|..|.+|+||+....-
T Consensus 18 ~~g~L~Ig~~~~~~~~~lp~ll~~F~~~~~---------~~~--~P~v-~v~l~~~~s~~l~~~l~~G~~Dl~i~~~~~~ 85 (294)
T 3cvg_A 18 SPVQLRIGNGGAGQSGLVKELADAFIKSKV---------DSG--SAPF-KVAWYKSDTTVTINYLKDGIVDVGITYSPVA 85 (294)
T ss_dssp -CEEEEEEESHHHHHTHHHHHHHHHHHHHH---------SCC-----C-EEEEEECCHHHHHHHHHTTSCSEEEESCHHH
T ss_pred CCceEEEEeccchhHHHHHHHHHHHHhhhc---------ccC--CCCe-EEEEEeCCHHHHHHHHHcCCCcEEEEcCchh
Confidence 457899997521 1 2344555554442 0 000 0111 2556666788999999999999999964321
Q ss_pred cccCCCCccceeecCCC-CcccEEEEEEEeCCCc
Q 018852 157 SEFGQGNEDLIIVHDAL-DYGDCRLSLAIPKYGI 189 (349)
Q Consensus 157 ~E~~~~~~~lv~~l~dL-gfG~CRLvvAvP~~~~ 189 (349)
.+. ....++. ..-. .+..-+|++++|.+..
T Consensus 86 ~~~-l~~~~~~--~~~~~~l~~d~lvlv~~~~hp 116 (294)
T 3cvg_A 86 ERI-SIKHGIS--ESPSYYAFRDHFMLIGPPSNP 116 (294)
T ss_dssp HHH-HHHTTSB--CSSCEEEEEEEEEEEECTTCT
T ss_pred hhH-HHhCCcc--cceeeeEEeccEEEEecCCCh
Confidence 111 0000010 0113 5677899999998754
No 120
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=24.17 E-value=17 Score=32.19 Aligned_cols=69 Identities=12% Similarity=0.134 Sum_probs=37.6
Q ss_pred CCCCCCCCceEEEecCC--C-CchHHHHHHHHHCCCccCCCCCCceEEecCCCCCeEEEeecCCchhhhcccCceeeeee
Q 018852 75 DNRISERDEIRLGLPSK--G-RMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIV 151 (349)
Q Consensus 75 ~~~~~~~~~LrIALP~K--G-RL~e~t~~LL~~aGi~~~~~~~R~L~~~~~~~p~vev~~vR~~DIP~yV~~G~aDlGIv 151 (349)
..+++.-..+||+|-++ | .|-+...+.|++.|+++.....-. .+..+.|++ +..+...|..|.+|.||+
T Consensus 13 ~~~~~~~~~MkIaIgsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~--~~~~dYPd~------a~~va~~V~~g~~d~GIl 84 (166)
T 3s5p_A 13 EAQTQGPGSMKVAFASDHGGRDLRMFLQQRASAHGYEVMDLGTES--DASVDYPDF------AKIGCEAVTSGRADCCIL 84 (166)
T ss_dssp ------CTTCEEEEEECGGGHHHHHHHHHHHHHTTCEEEEEEC----------CHH------HHHHHHHHHTTSCSEEEE
T ss_pred eecCCCCCceEEEEEECchHHHHHHHHHHHHHHCCCEEEEcCCCC--CCCCCHHHH------HHHHHHHHHcCCCcEEEE
Confidence 33344444468888754 3 456778899999999876532111 000112322 234567888999999885
No 121
>1iej_A Ovotransferrin; iron, metal binding protein; 1.65A {Gallus gallus} SCOP: c.94.1.2 PDB: 1tfa_A 1nft_A 1nnt_A 1ovb_A 1gv8_A 1gvc_A*
Probab=24.02 E-value=82 Score=30.17 Aligned_cols=62 Identities=18% Similarity=0.178 Sum_probs=37.2
Q ss_pred CchhhhcccCceeeeeeccceecccCCCCccceeecCCCCc------ccEEEEEE-EeCCCccCcccchHHhhc
Q 018852 135 KDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDY------GDCRLSLA-IPKYGIFENINSLRELAQ 201 (349)
Q Consensus 135 ~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgf------G~CRLvvA-vP~~~~~~dv~sl~dL~~ 201 (349)
.|.-..+..|.||++..+-..+...+...+++.-++ .--+ .....+|| |+++ +++ +++||++
T Consensus 43 ~~Ci~aI~~g~aD~~~ld~~~~~~A~~~~~~l~pi~-~e~~~~~~~~~~~Y~aVaVVkkd---S~i-sl~dLkG 111 (332)
T 1iej_A 43 LDCIKAIANNEADAITLDGGQVFEAGLAPYKLKPIA-AEVYEHTEGSTTSYYAVAVVKKG---TEF-TVNDLQG 111 (332)
T ss_dssp HHHHHHHHTTSCCBEEECHHHHHHHTSTTTCCEEEE-EEEEECSSSEESEEEEEEEEETT---CCC-CGGGCTT
T ss_pred HHHHHHHHcCCCcEEEeCccceeEecccccCCEEEE-EEEecCCCCCCCceEEEEEEeCC---CCC-CHHHHCC
Confidence 478889999999999997666666542223332111 1112 23444444 5666 566 6888886
No 122
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=23.80 E-value=1.1e+02 Score=24.81 Aligned_cols=69 Identities=17% Similarity=0.108 Sum_probs=49.0
Q ss_pred CCccHHHHHHhcCCceEEEEecC-CccccccCCCcceeeeecccchhhHhhCCcEEecCceEEEEEEEEEeecch
Q 018852 217 FTYLGPKFMKDNGLKHVVFSTAD-GALEAAPAMGIADAILDLVSSGTTLRENNLKEIEGGVVLESQAVLVASRKS 290 (349)
Q Consensus 217 YPnlar~yf~~~Gi~~v~Ii~l~-GSvElAP~lGlAD~IVDIVsTGtTLraNgLk~ie~g~IleSsA~LIaN~~s 290 (349)
+..+.+.++++.|++ ++++... ....-+-.-|-+|+|..+..| .-|++.+.... .++.+..++++.+..
T Consensus 37 ~~dl~~~i~~~~g~~-~~~~~~~~~~~~~~l~~g~~D~~~~~~~~--~~r~~~~~~s~--p~~~~~~~~~~~~~~ 106 (234)
T 3h7m_A 37 NVELTRAIAEVMGMT-VEFRLGAWSEMFSALKSGRVDVLQGISWS--EKRARQIDFTP--PHTIVYHAIFARRDS 106 (234)
T ss_dssp HHHHHHHHHHHHTCC-EEEEEECGGGHHHHHHTTSSSEEEEEECC--HHHHTTEEEEE--EEEEEEEEEEEESSS
T ss_pred EHHHHHHHHHHcCCc-eEEEeCCHHHHHHHHhCCCeeEEEeccCC--HhHHhhcCCCc--cccccceEEEEECCC
Confidence 457899999999996 8888642 222223345788887655543 45677787777 889999999997765
No 123
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=23.36 E-value=88 Score=27.50 Aligned_cols=160 Identities=11% Similarity=0.101 Sum_probs=83.0
Q ss_pred CchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhcCCccCCCCCcEEE
Q 018852 135 KDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVA 214 (349)
Q Consensus 135 ~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~~~~~~~~~~lRVA 214 (349)
.++-..|..|.+|+.+.+.-.-.|... .+.. -.+|....+++.++.+ .++++++||.......-...+|||
T Consensus 95 ~~~~~~l~~g~~D~~~~~~~~t~~R~~----~~~f--s~p~~~~~~~~~~~~~---~~~~~~~dl~~~~~~~l~~~~~vg 165 (284)
T 2a5s_A 95 NGMIGEVVYQRAVMAVGSLTINEERSE----VVDF--SVPFVETGISVMVSRG---TQVTGLSDKKFQRPHDYSPPFRFG 165 (284)
T ss_dssp CHHHHHHHTTSCSEECSSCBCCHHHHT----TEEE--CCCCEEECEEEEEETT---CCCCSTTSHHHHSGGGSSSCCCEE
T ss_pred HHHHHHHhcCCcCEEEEEEEEeccccc----eEEe--ccCchhcCEEEEEECC---cccccccccccCChhHcCCCceEE
Confidence 567788999999999877655555431 2211 3577788888999987 456666666531100000146898
Q ss_pred cCCCccHHHHHHhcCCceE--EEEec--CCccccc--cCCCcceeeeecccchhhHhhC----CcEEecCc-eEEEEEEE
Q 018852 215 TGFTYLGPKFMKDNGLKHV--VFSTA--DGALEAA--PAMGIADAILDLVSSGTTLREN----NLKEIEGG-VVLESQAV 283 (349)
Q Consensus 215 TkYPnlar~yf~~~Gi~~v--~Ii~l--~GSvElA--P~lGlAD~IVDIVsTGtTLraN----gLk~ie~g-~IleSsA~ 283 (349)
+--...+..+|.+. .... .++.. ...-|+. -.-|-+|+++.-..+...+.++ .++.+.++ .+....-.
T Consensus 166 ~v~~~s~~~~l~~~-~~~~~~~i~~~~~~~~~~~l~~l~~G~vDa~i~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 244 (284)
T 2a5s_A 166 TVPNGSTERNIRNN-YPYMHQYMTRFNQRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIFATTGYG 244 (284)
T ss_dssp CCTTSHHHHHHHTT-CHHHHHHHGGGCCSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCTTSCEEEEECCCGGGCEEEC
T ss_pred EEeCCchHHHHHHH-HHHHHHHHHhccCCCHHHHHHHHHcCCeeEEEEchHHHHHHHhcCCCCCEEEeCCccccccCceE
Confidence 64434445566543 1111 12222 2222221 2458889877665555554332 34444101 12223334
Q ss_pred EEeecchhhhhcCchhHHHHHHHHHH
Q 018852 284 LVASRKSLIRRKGVLDATHEILERLE 309 (349)
Q Consensus 284 LIaN~~s~~~k~~~~~~i~~li~rl~ 309 (349)
+..++.+ . .++.+++.+..++
T Consensus 245 ~a~~k~~-~----l~~~ln~~l~~l~ 265 (284)
T 2a5s_A 245 IALQKGS-P----WKRQIDLALLQFV 265 (284)
T ss_dssp CEEETTC-T----THHHHHHHHHHHH
T ss_pred EEecCCC-H----HHHHHHHHHHHHH
Confidence 4455543 1 2345666665554
No 124
>1ryo_A Serotransferrin; iron transport, metal transport; 1.20A {Homo sapiens} SCOP: c.94.1.2 PDB: 1bp5_A 1btj_A 1n84_A 1oqg_A 2o84_X 1fqf_A 1fqe_A 1oqh_A 2o7u_B 1jqf_A 1n7x_A 3fgs_A 1a8e_A 1a8f_A 1suv_C 1dtg_A 1d3k_A 1d4n_A 1n7w_A 1b3e_A ...
Probab=23.22 E-value=48 Score=31.69 Aligned_cols=64 Identities=14% Similarity=0.116 Sum_probs=37.4
Q ss_pred CchhhhcccCceeeeeeccceecccCCCCccceeec-CCCC----cccEEEEEE-EeCCCccCcccchHHhhcC
Q 018852 135 KDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVH-DALD----YGDCRLSLA-IPKYGIFENINSLRELAQM 202 (349)
Q Consensus 135 ~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l-~dLg----fG~CRLvvA-vP~~~~~~dv~sl~dL~~~ 202 (349)
.|.-..+..|.+|++..|-..+...+...+++.-++ +.-+ -...--+|| |+++ +++ +++||++.
T Consensus 46 ~~ci~ai~~g~aD~~~l~~~~~~~A~~~~~~l~pi~ae~~~~~~~~~~~Y~sVaVVkkd---S~i-sl~dLkGK 115 (327)
T 1ryo_A 46 LDCIRAIAANEADAVTLDAGLVYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKD---SGF-QMNQLRGK 115 (327)
T ss_dssp HHHHHHHHTTSCCBEEECHHHHHHHHSTTTCCEEEEEEEEECSSSEESEEEEEEEEETT---CCC-CGGGCTTC
T ss_pred HHHHHHHHcCCCcEEEeCccceeEEecccCCCEEEEEEEecCCCCCCCceEEEEEEeCC---CCC-ChHHhCCC
Confidence 378889999999999998766666542222321111 0011 123444444 4565 556 78888864
No 125
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=23.02 E-value=1.1e+02 Score=27.92 Aligned_cols=64 Identities=22% Similarity=0.231 Sum_probs=44.8
Q ss_pred CCCCCCceEEEecCCCCchHHH-HHHHHHCCCccCCCCCCceEEecCCCCCeEEEeecCCchhhhcccCceeeeeeccce
Q 018852 77 RISERDEIRLGLPSKGRMAADT-LDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDT 155 (349)
Q Consensus 77 ~~~~~~~LrIALP~KGRL~e~t-~~LL~~aGi~~~~~~~R~L~~~~~~~p~vev~~vR~~DIP~yV~~G~aDlGIvG~Dv 155 (349)
++.+..--|||++ +|...+.. ..+|++.|++.. +++++.+.+.++...+..|.+|..++...+
T Consensus 113 s~~DLkGk~I~v~-~gs~~~~~~~~~l~~~Gl~~~---------------~v~~v~~~~~~~~~al~~G~vDa~~~~~~~ 176 (348)
T 3uif_A 113 SIKDLKGKKIALH-RGRPWELAFSNLLQSEGLTFK---------------DFKIVNVNPQVGAAALASGTVDGFFSLFDS 176 (348)
T ss_dssp SGGGGTTSEEEEC-TTSTHHHHHHHHHHHTTCCGG---------------GSEEECCCHHHHHHHHHHTSSSEEEESTTH
T ss_pred CHHHcCCCEEEec-CCChHHHHHHHHHHHcCCCHH---------------HeEEEECCHHHHHHHHHcCCCCEEEechHH
Confidence 3344444589998 78876554 567889998521 234444556789999999999999887654
Q ss_pred e
Q 018852 156 V 156 (349)
Q Consensus 156 L 156 (349)
+
T Consensus 177 ~ 177 (348)
T 3uif_A 177 Y 177 (348)
T ss_dssp H
T ss_pred H
Confidence 4
No 126
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=22.05 E-value=90 Score=27.93 Aligned_cols=70 Identities=19% Similarity=0.171 Sum_probs=43.4
Q ss_pred eEEEeecCCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcccEEEEEEEeCCCccCcccchHHhhc
Q 018852 127 LEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQ 201 (349)
Q Consensus 127 vev~~vR~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG~CRLvvAvP~~~~~~dv~sl~dL~~ 201 (349)
+++...-..++-..+.+|.+|+|+++...-.+.+....++. ...|+.=.++++++.+..+..+ ++++|+.
T Consensus 34 i~v~~~gS~~gi~~l~~g~~Dig~~~~~~~~~~~~~~~~l~----~~~ia~d~lvvvv~~~~~~~~l-t~~~L~~ 103 (265)
T 4exl_A 34 VNVQGGGSGTGLSQVQSGAVDIGNSDVFAEEKDGIDASALV----DHKVAVAGLALIVNKEVDVDNL-TTEQLRQ 103 (265)
T ss_dssp EEEEEECHHHHHHHHHTTSSSEEEESSCGGGSTTCCGGGEE----CCEEEEEEEEEEECTTCCCCEE-CHHHHHH
T ss_pred EEEeeCCcHHHHHHHHcCCCccccccCCcchhhcccccCce----EeeEEEEEEEEEECCCCccccC-CHHHHHH
Confidence 44455567789999999999999985321111111112222 4678888899999877543322 4566654
No 127
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=21.79 E-value=31 Score=30.62 Aligned_cols=72 Identities=11% Similarity=0.153 Sum_probs=41.8
Q ss_pred CCccHHHHHHhcCCceEEEEecCCccccccCC--CcceeeeecccchhhHhhCCcEEecCceEEE-EEEEEEeecc
Q 018852 217 FTYLGPKFMKDNGLKHVVFSTADGALEAAPAM--GIADAILDLVSSGTTLRENNLKEIEGGVVLE-SQAVLVASRK 289 (349)
Q Consensus 217 YPnlar~yf~~~Gi~~v~Ii~l~GSvElAP~l--GlAD~IVDIVsTGtTLraNgLk~ie~g~Ile-SsA~LIaN~~ 289 (349)
|-...+-||++.|++ |+++...++.+....+ |-+|+.+--..+-...+++|..+..=+.... +...|++++.
T Consensus 21 ~va~~~g~~~~~Gl~-v~~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~ 95 (302)
T 3ix1_A 21 YVAIENGYFAEEGLD-VDIVFPTNPTDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVASVVRSPLNHVMFLAE 95 (302)
T ss_dssp HHHHHTTHHHHTTEE-EEEECCSSTTHHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEEEEECSCCEEEEEEGG
T ss_pred HHHHHcChHHHcCCc-EEEecCCCCchHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEEEEEeccCCEEEEEECC
Confidence 334567899999996 9999877776665543 5666543211122345667654332013332 3567787664
No 128
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=21.53 E-value=27 Score=25.46 Aligned_cols=54 Identities=15% Similarity=0.173 Sum_probs=32.8
Q ss_pred hHHHHHHHHHCCCccCCCC--CCceEEecCCCCCeEEEeecCC-chhhhcccCce-eeeeec
Q 018852 95 AADTLDLLKDCQLSVKQVN--PRQYVAQIPQLSNLEVWFQRPK-DIVRKLLSGDL-DLGIVG 152 (349)
Q Consensus 95 ~e~t~~LL~~aGi~~~~~~--~R~L~~~~~~~p~vev~~vR~~-DIP~yV~~G~a-DlGIvG 152 (349)
..+.+++|++.|+.+.+.. .+.|. .++.+ .+..-+.. ||+.+...... ++|+.=
T Consensus 7 ~~elik~L~~~G~~~~r~~GSH~~~~--~~~~~--~~~vP~h~~ei~~g~lk~Ilkqagl~~ 64 (70)
T 1whz_A 7 PEEVARKLRRLGFVERMAKGGHRLYT--HPDGR--IVVVPFHSGELPKGTFKRILRDAGLTE 64 (70)
T ss_dssp HHHHHHHHHHTTCEEEEEETTEEEEE--CTTSC--EEEEECSSSSCCHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHCCCEEeCCCCCCceEe--cCCCC--eeEecCCcCcCCHHHHHHHHHHcCCCH
Confidence 4789999999999865432 23443 23322 33333334 99988877654 555543
No 129
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=20.35 E-value=50 Score=30.23 Aligned_cols=51 Identities=12% Similarity=0.159 Sum_probs=34.9
Q ss_pred HHHHHHhcCCceEEEEecCCccccc--cCCCcceeeeecccchhhHhhCCcEEe
Q 018852 221 GPKFMKDNGLKHVVFSTADGALEAA--PAMGIADAILDLVSSGTTLRENNLKEI 272 (349)
Q Consensus 221 ar~yf~~~Gi~~v~Ii~l~GSvElA--P~lGlAD~IVDIVsTGtTLraNgLk~i 272 (349)
.+-||++.|++ |+++...|...+. -.-|-+|.-+--...-...+++|+.+.
T Consensus 29 ~kG~f~e~GLd-Vei~~~~~~~~~~~al~sG~~D~g~~~~~~~~~a~~~G~~v~ 81 (342)
T 4esw_A 29 IKGYFKDENLD-IAILEPSNPSDVTELVGSGKVDMGLKAMVGTLAAKARGFPVT 81 (342)
T ss_dssp HTTHHHHTTCE-EEEEEESSGGGHHHHHHHTSSSEEEEEHHHHHHHHHTTCCEE
T ss_pred HCCchHHcCCe-EEEEeCCChHHHHHHHHcCCcCEEEecHHHHHHHHHCCCCeE
Confidence 35699999996 9999988776543 345778865433344455678886544
No 130
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=20.18 E-value=1.4e+02 Score=26.29 Aligned_cols=65 Identities=17% Similarity=0.127 Sum_probs=45.2
Q ss_pred CCCCCceEEEecCCCCchHHHH-HHHHHCCCccCCCCCCceEEecCCCCCeEEEeecC-CchhhhcccCceeeeeeccce
Q 018852 78 ISERDEIRLGLPSKGRMAADTL-DLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRP-KDIVRKLLSGDLDLGIVGLDT 155 (349)
Q Consensus 78 ~~~~~~LrIALP~KGRL~e~t~-~LL~~aGi~~~~~~~R~L~~~~~~~p~vev~~vR~-~DIP~yV~~G~aDlGIvG~Dv 155 (349)
+.+..-.|||++..|...+..+ .+|++.|++.. +++++.+.+ .++...+..|.+|.+++...+
T Consensus 133 ~~DL~Gk~i~~~~~gs~~~~~~~~~l~~~G~~~~---------------~v~~~~~~~~~~~~~al~~G~vDa~~~~~p~ 197 (346)
T 3qsl_A 133 PADLKGRKIGVTAPGSSTNMVVNFFLAKHGLKAS---------------DVSFIGVGAGAGAVTALRSGQIDAISNTDPV 197 (346)
T ss_dssp GGGGTTCEEEESSTTSHHHHHHHHHHHHTTCCGG---------------GSEEEECCSSHHHHHHHHHTSCSEEEEETTH
T ss_pred hHHcCCCEEEECCCCcHHHHHHHHHHHHcCCCHH---------------HeEEEecCCcHHHHHHHHcCCccEEEecchh
Confidence 3333345999986787766554 67888998421 244455543 589999999999999987665
Q ss_pred ec
Q 018852 156 VS 157 (349)
Q Consensus 156 L~ 157 (349)
..
T Consensus 198 ~~ 199 (346)
T 3qsl_A 198 VS 199 (346)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 131
>1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A {Homo sapiens} SCOP: c.94.1.2 PDB: 1eh3_A 2pms_A* 1h43_A 1h44_A 1dsn_A 1lct_A 1hse_A 1vfe_A 1l5t_A 1vfd_A 1lgb_C* 1z6v_A 1z6w_A
Probab=20.17 E-value=67 Score=30.74 Aligned_cols=72 Identities=18% Similarity=0.158 Sum_probs=41.3
Q ss_pred CCeEEEeec-CCchhhhcccCceeeeeeccceecccCCCCccceeecCCCCcc------cEEEEEE-EeCCCccCcccch
Q 018852 125 SNLEVWFQR-PKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYG------DCRLSLA-IPKYGIFENINSL 196 (349)
Q Consensus 125 p~vev~~vR-~~DIP~yV~~G~aDlGIvG~DvL~E~~~~~~~lv~~l~dLgfG------~CRLvvA-vP~~~~~~dv~sl 196 (349)
+.++++... -.|.-..+..|.||+++.|-..+...+...+++.-++. --++ .+.-+|| |+++ .++ ++
T Consensus 33 ~~vecv~~~~~~~ci~aI~~g~AD~~~ld~~~~~~A~~~~~~l~pi~~-e~~~~~~~~~~~Y~avaVVkk~---s~i-sl 107 (334)
T 1h45_A 33 PPVSCIKRDSPIQCIQAIAENRADAVTLDGGFIYEAGLAPYKLRPVAA-EVYGTERQPRTHYYAVAVVKKG---GSF-QL 107 (334)
T ss_dssp CCEEEEECSSHHHHHHHHHTTSCCBEEECHHHHHHHHSTTTCEEEEEE-EEEECSSSEESEEEEEEEEETT---CCC-CG
T ss_pred CceEEEEcCCHHHHHHHHHcCCCCEEEeCccceEEeecCccCCEEEEE-EeecCCCCCCCceEEEEEEeCC---CCC-CH
Confidence 345544332 24788899999999999976666665422123221111 1111 2444454 5666 456 78
Q ss_pred HHhhc
Q 018852 197 RELAQ 201 (349)
Q Consensus 197 ~dL~~ 201 (349)
+||++
T Consensus 108 ~dLkG 112 (334)
T 1h45_A 108 NELQG 112 (334)
T ss_dssp GGCTT
T ss_pred HHHCC
Confidence 88886
No 132
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate binding protein, selectivity helix, TR membrane; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3}
Probab=20.13 E-value=2.1e+02 Score=26.42 Aligned_cols=86 Identities=13% Similarity=0.066 Sum_probs=51.6
Q ss_pred CcccchHHhhcCCccCCCCCcEEEcCCCccHHHHHHhcCCceEEEEecCCccccccC--CCcceeeeecccchhhHhhCC
Q 018852 191 ENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPA--MGIADAILDLVSSGTTLRENN 268 (349)
Q Consensus 191 ~dv~sl~dL~~~~~~~~~~~lRVATkYPnlar~yf~~~Gi~~v~Ii~l~GSvElAP~--lGlAD~IVDIVsTGtTLraNg 268 (349)
.+|++++||+++ ++|+.. -.+..++|+..|.. -+++. ..|+... .|..|+..-- -.++..++
T Consensus 144 kpI~s~~DlkGl-------KiR~~~--~~~~~~~~~alGa~---pv~m~-~~Evy~ALq~GvvDg~e~~---~~~~~~~~ 207 (326)
T 3fxb_A 144 TPVTTCSDLDEV-------KFRVMT--NPLLVESYKAFGAT---PTPLP-WGEVYGGLQTNVIQGQENP---TFFLYSTK 207 (326)
T ss_dssp SCCSSGGGSTTC-------EEEECS--CHHHHHHHHHHTSE---EEECC-GGGHHHHHHTTSCCEEEEE---HHHHHHTT
T ss_pred CCCCChHHhCCC-------EEEecC--CHHHHHHHHHcCCe---eeecC-HHHHHHHHHcCCcceEecC---HHHHHhcc
Confidence 689999998863 345432 25788999999963 33332 2354443 4555554422 23566677
Q ss_pred cEEecCceEE-----EEEEEEEeecchhhh
Q 018852 269 LKEIEGGVVL-----ESQAVLVASRKSLIR 293 (349)
Q Consensus 269 Lk~ie~g~Il-----eSsA~LIaN~~s~~~ 293 (349)
+-++.. .+. -+...++.|+..|..
T Consensus 208 ~~Ev~k-y~~~~~~~~~~~~~~~n~~~w~~ 236 (326)
T 3fxb_A 208 IYEVTD-YITYAGHNNFTTAVMANKDFYDG 236 (326)
T ss_dssp GGGSCS-EEEECCCCEEEEEEEEEHHHHHH
T ss_pred Hhhhcc-eeEEcCccccceEEEEeHHHHhc
Confidence 766541 111 245678899988764
Done!