RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 018852
(349 letters)
>d1h3da1 c.94.1.1 (A:5-224) ATP phosphoribosyltransferase
(ATP-PRTase, HisG), catalytic domain {Escherichia coli
[TaxId: 562]}
Length = 220
Score = 152 bits (385), Expect = 2e-45
Identities = 65/236 (27%), Positives = 116/236 (49%), Gaps = 24/236 (10%)
Query: 84 IRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLS 143
+R+ + GR++ D+ +LL C + + ++ ++ +A + +++ R DI ++
Sbjct: 3 LRIAMQKSGRLSDDSRELLARCGIKIN-LHTQRLIAMAENM-PIDILRVRDDDIPGLVMD 60
Query: 144 GDLDLGIVGLDTVSEFG-----QGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRE 198
G +DLGI+G + + E QG + LD+G CRLSLA P ++ SL
Sbjct: 61 GVVDLGIIGENVLEEELLNRRAQGEDPRYFTLRRLDFGGCRLSLATPVDEAWDGPLSLN- 119
Query: 199 LAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAMGIADAILDLV 258
R+AT + +L +++ G +G++E AP G+ADAI DLV
Sbjct: 120 -----------GKRIATSYPHLLKRYLDQKG-ISFKSCLLNGSVEVAPRAGLADAICDLV 167
Query: 259 SSGTTLRENNLKEIEGGVVLESQAVLVASRKSLIRRKGVLDATHEILERLEAHLRA 314
S+G TL N L+E+E V+ S+A L+ + K ++L R++ ++A
Sbjct: 168 STGATLEANGLREVE--VIYRSKACLIQRDGEMEESK--QQLIDKLLTRIQGVIQA 219
>d1z7me1 c.94.1.1 (E:1-204) ATP phosphoribosyltransferase
(ATP-PRTase, HisG), catalytic domain {Lactococcus lactis
[TaxId: 1358]}
Length = 204
Score = 143 bits (362), Expect = 4e-42
Identities = 54/226 (23%), Positives = 101/226 (44%), Gaps = 24/226 (10%)
Query: 84 IRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLS 143
I++ + KGR+ LL++ V+ + QI +L++ F +P D++ L
Sbjct: 2 IKIAIT-KGRIQKQVTKLLENADYDVEPILNLGRELQIKTKDDLQIIFGKPNDVITFLEH 60
Query: 144 GDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMP 203
G +D+G VG DT+ E + L G C +LA
Sbjct: 61 GIVDIGFVGKDTLDENDFDD---YYELLYLKIGQCIFALASYPD--------------FS 103
Query: 204 QWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAMGIADAILDLVSSGTT 263
++ R+A+ + + K+ + + +G++E P +G+ADAI+D+V +G T
Sbjct: 104 NKNFQRHKRIASKYPRVTKKYFAQKQ-EDIEIIKLEGSVELGPVVGLADAIVDIVETGNT 162
Query: 264 LRENNLKEIEGGVVLESQAVLVASRKSLIRRKGVLDATHEILERLE 309
L N L+ IE + + ++ ++ S +K + E++ERLE
Sbjct: 163 LSANGLEVIE--KISDISTRMIVNKSSFKFKKDKII---EMVERLE 203
>d1nh8a1 c.94.1.1 (A:1-210) ATP phosphoribosyltransferase
(ATP-PRTase, HisG), catalytic domain {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 210
Score = 133 bits (336), Expect = 3e-38
Identities = 59/231 (25%), Positives = 112/231 (48%), Gaps = 23/231 (9%)
Query: 84 IRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLS 143
+R+ +P+KG ++ ++L + + + + I ++N+E +F RPKDI + S
Sbjct: 2 LRVAVPNKGALSEPATEILAEAGYRRRT-DSKDLTV-IDPVNNVEFFFLRPKDIAIYVGS 59
Query: 144 GDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMP 203
G+LD GI G D V + + + AL +G A P + + +L
Sbjct: 60 GELDFGITGRDLVCD----SGAQVRERLALGFGSSSFRYAAPAGRNW----TTADL---- 107
Query: 204 QWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAMGIADAILDLVSSGTT 263
+R+AT + L K + G++ V DGA+E + +G+ADAI D+V SG T
Sbjct: 108 -----AGMRIATAYPNLVRKDLATKGIEATVIRL-DGAVEISVQLGVADAIADVVGSGRT 161
Query: 264 LRENNLKEIEGGVVLESQAVLVASRKSLIRRKGVLDATHEILERLEAHLRA 314
L +++L G + +S+AVL+ + + + +A +++ R++ +
Sbjct: 162 LSQHDLVAF-GEPLCDSEAVLIERAGTDGQDQ--TEARDQLVARVQGVVFG 209
>d1ve4a1 c.94.1.1 (A:1-206) ATP phosphoribosyltransferase
(ATP-PRTase, HisG), catalytic domain {Thermus
thermophilus [TaxId: 274]}
Length = 206
Score = 132 bits (334), Expect = 6e-38
Identities = 60/231 (25%), Positives = 103/231 (44%), Gaps = 30/231 (12%)
Query: 80 ERDEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVR 139
R + + LP KGRM + ++LK L + +V + + + + + R KD+
Sbjct: 2 RRFALTVALP-KGRMFREAYEVLKRAGLDLPEVEGERTLLHGKE-GGVALLELRNKDVPI 59
Query: 140 KLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLREL 199
+ G ++G+VG D + + G+ + + L +G CRLSL
Sbjct: 60 YVDLGIAEIGVVGKDVLLDSGRDLFEPV----DLGFGACRLSLI---------------- 99
Query: 200 AQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAMGIADAILDLVS 259
RVAT + + +K+ G V + E A G+ADA++D+V
Sbjct: 100 --RRPGDTGPIRRVATKYPNFTARLLKERGWAADVVELSGNI-ELAAVTGLADAVVDVVQ 156
Query: 260 SGTTLRENNLKEIEGGVVLESQAVLVASRKSLIRRKGVLDATHEILERLEA 310
+G TLR L E+E V+ S A LV +R++L ++ VL +++RL
Sbjct: 157 TGATLRAAGLVEVE--VLAHSTARLVVNRQALKLKRAVLK---PLIQRLRE 202
>d1o63a_ c.94.1.1 (A:) ATP phosphoribosyltransferase (ATP-PRTase,
HisG), catalytic domain {Thermotoga maritima [TaxId:
2336]}
Length = 203
Score = 120 bits (301), Expect = 3e-33
Identities = 50/231 (21%), Positives = 97/231 (41%), Gaps = 32/231 (13%)
Query: 84 IRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLS 143
++L +P KGR+ + LK + + R+ + + + ++ + RP D+ L+
Sbjct: 1 LKLAIP-KGRLEEKVMTYLKKTGVIFE----RES-SILREGKDIVCFMVRPFDVPTYLVH 54
Query: 144 GDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMP 203
G D+G G D + E + R+ LA PK
Sbjct: 55 GVADIGFCGTDVLLEKETSLIQPFFIP----TNISRMVLAGPKG---------------- 94
Query: 204 QWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAMGIADAILDLVSSGTT 263
+ E R+AT F + ++ + G H G++E AP G++D I+D+ +G T
Sbjct: 95 RGIPEGEKRIATKFPNVTQRYCESKG-WHCRIIPLKGSVELAPIAGLSDLIVDITETGRT 153
Query: 264 LRENNLKEIEGGVVLESQAVLVASRKSLIRRKGVLDATHEILERLEAHLRA 314
L+ENNL+ ++ + + +V + S ++ + LE+L+ +
Sbjct: 154 LKENNLEILD--EIFVIRTHVVVNPVSYRTKREEVV---SFLEKLQEVIEH 199
>d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella
flexneri [TaxId: 623]}
Length = 228
Score = 29.0 bits (64), Expect = 0.63
Identities = 22/171 (12%), Positives = 42/171 (24%), Gaps = 24/171 (14%)
Query: 129 VWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYG 188
+ V LL+G D+ +V + N I +
Sbjct: 46 AHMRGADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIAL------------------E 87
Query: 189 IFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGL--KHVVFSTADGA-LEAA 245
+ + + + RV K M D V
Sbjct: 88 LGPHTYVGEHQLICRKGESGNVKRVGLDSRSADQKIMTDVFFGDSDVERVDLSYHESLQR 147
Query: 246 PAMGIADAILDLVSSGTTLRENNLKEIEGGVVLESQAVLVASRKSLIRRKG 296
G DA+ + + E + +E + + L A+ ++ R
Sbjct: 148 IVKGDVDAV---IWNVVAENELTMLGLEATPLTDDPRFLQATEAVVLTRVD 195
>d1xoub_ a.231.1.2 (B:) EspA chaperone CesA {Escherichia coli
[TaxId: 562]}
Length = 84
Score = 25.4 bits (55), Expect = 3.4
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 191 ENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHV 233
E++N L E A+ AEK ++ G+TY + + D+ L +
Sbjct: 35 ESVNELSEKAKTDPQAAEKLNKLIEGYTYGEERKLYDSALSKI 77
>d1gnla_ e.26.1.1 (A:) Hybrid cluster protein (prismane protein)
{Desulfovibrio desulfuricans [TaxId: 876]}
Length = 543
Score = 26.7 bits (59), Expect = 4.4
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 173 LDYGDC-------RLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPK 223
LD G C ++L + + E++N L + W +K + V LG K
Sbjct: 447 LDAGQCNDSYSLAVIALKLKEVFGLEDVNDL-PIVYNIAWYEQKAVIVLLALLSLGVK 503
>d1su7a_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
{Carboxydothermus hydrogenoformans [TaxId: 129958]}
Length = 633
Score = 26.7 bits (59), Expect = 4.6
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 6/55 (10%)
Query: 173 LDYGDC----RLS-LAIPKYGIFE-NINSLRELAQMPQWTAEKPLRVATGFTYLG 221
L G C R L +++ L +A + EK + + T +G
Sbjct: 518 LHMGSCVDNSRAVALVAALANRLGVDLDRLPVVASAAEAMHEKAVAIGTWAVTIG 572
>d1jsda_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
strains [TaxId: 11320]}
Length = 317
Score = 26.2 bits (58), Expect = 5.6
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 168 IVHDALDYGDCRLSLAIPKYGI-----FENINSLRELAQMPQWTAEKPLRVATG 216
I+ L+ G+C + + G+ F N++ P++ K L++A G
Sbjct: 258 ILKTDLNSGNCVVQCQTERGGLNTTLPFHNVSK-YAFGNCPKYVGVKSLKLAVG 310
>d1jqka_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
{Rhodospirillum rubrum [TaxId: 1085]}
Length = 610
Score = 26.4 bits (58), Expect = 6.0
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Query: 173 LDYGDC----RLS-LAIPKYGIFE-NINSLRELAQMPQWTAEKPLRVATGFTYLG 221
+ G C R LA +++ L +A P+ +EK L + + +G
Sbjct: 499 MHMGSCVDNSRAVALATALANKLGVDLSDLPLVASAPECMSEKALAIGSWAVTIG 553
>d1iwga1 d.58.44.1 (A:38-134) Multidrug efflux transporter AcrB pore
domain; PN1, PN2, PC1 and PC2 subdomains {Escherichia
coli [TaxId: 562]}
Length = 97
Score = 24.9 bits (54), Expect = 6.0
Identities = 6/35 (17%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 317 QFTVTANMRGNSAEEVAERILS--QTSFSGLQGPT 349
T++A+ G A+ V + + + + +G+
Sbjct: 5 AVTISASYPGADAKTVQDTVTQVIEQNMNGIDNLM 39
>d1oaoa_ e.26.1.2 (A:) Bifunctional carbon monoxide
dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH)
subunit {Moorella thermoacetica [TaxId: 1525]}
Length = 673
Score = 26.4 bits (58), Expect = 6.0
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 6/55 (10%)
Query: 173 LDYGDC----RLS-LAIPKYGIFE-NINSLRELAQMPQWTAEKPLRVATGFTYLG 221
G C R L + + + +A P+ + K + T + LG
Sbjct: 544 FHMGSCVDNSRAVDLLMAMANDLGVDTPKVPFVASAPEAMSGKAAAIGTWWVSLG 598
>d1vm6a2 d.81.1.3 (A:97-182) Dihydrodipicolinate reductase
{Thermotoga maritima [TaxId: 2336]}
Length = 86
Score = 24.5 bits (53), Expect = 7.0
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 149 GIVGLDTVSEFGQGNEDLIIVHDAL 173
G+ G V FG E + I H A+
Sbjct: 63 GVPGDHVVV-FGNIGETIEIKHRAI 86
>d1jqna_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia
coli [TaxId: 562]}
Length = 880
Score = 25.9 bits (56), Expect = 10.0
Identities = 7/60 (11%), Positives = 16/60 (26%), Gaps = 6/60 (10%)
Query: 292 IRRKGVLDATHEILERLEAHLRASGQFTVTANMRGNSAEEVAERILS--QTSFSGLQGPT 349
I R+ ++ E+ L+ + + + I T P+
Sbjct: 139 ITRRTLIHKMVEVNACLKQLDNKD----IADYEHNQLMRRLRQLIAQSWHTDEIRKLRPS 194
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.378
Gapped
Lambda K H
0.267 0.0506 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,213,965
Number of extensions: 55814
Number of successful extensions: 166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 15
Length of query: 349
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 263
Effective length of database: 1,226,816
Effective search space: 322652608
Effective search space used: 322652608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.7 bits)