BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018853
(349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major
Allergen From Cedar Pollen
pdb|1PXZ|B Chain B, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major
Allergen From Cedar Pollen
Length = 346
Score = 279 bits (714), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 145/289 (50%), Positives = 186/289 (64%), Gaps = 15/289 (5%)
Query: 68 NPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRH 127
NPID CW D NW NR +LADC+VGF T+GGKGG Y VT S+D +P NPTPGTLR+
Sbjct: 2 NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVT-STDDNPVNPTPGTLRY 60
Query: 128 AVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNG--CLTLQYXXXXXXX 185
+ + +WI F+ NM IKLK L + +KTIDGRGA+V + GNG CL ++
Sbjct: 61 GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHL-GNGGPCLFMRKVSHVILH 119
Query: 186 XXXXXXCKPS--GNTMIASS----PTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDG 239
C S G+ +++ S P H DGD I++ W+DH SLS C+DG
Sbjct: 120 SLHIHGCNTSVLGDVLVSESIGVEPVHA-----QDGDAITMRNVTNAWIDHNSLSDCSDG 174
Query: 240 LIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCR 299
LID +GSTGITISNN+F +H++VMLLGH+D Y D M+VT+AFN FG QRMPR R
Sbjct: 175 LIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRAR 234
Query: 300 RGYIHVVNNDFTSWEMYAIGGSANPTINSQGNRYTAPPDDNAKEVYFQI 348
G +HV NN++ W +YAIGGS+NPTI S+GN +TAP + KEV +I
Sbjct: 235 YGLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRI 283
>pdb|3ZSC|A Chain A, Catalytic Function And Substrate Recognition Of The
Pectate Lyase From Thermotoga Maritima
Length = 340
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 116/274 (42%), Gaps = 56/274 (20%)
Query: 87 LADCSVGFA--------QGTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQTEPIWIT 138
L D VGFA +GT+GG GG+I V + + + G I
Sbjct: 2 LNDKPVGFASVPTADLPEGTVGGLGGEIVFVRTAEELEKYTTAEGKY----------VIV 51
Query: 139 FASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTLQYXXXXXXXXXXXXXCKPSGNT 198
++ + K E+ + S KTI G + +I G G + K + N
Sbjct: 52 VDGTIVFEPKREIKVLSDKTIVGIN-DAKIVGGGLV-----------------IKDAQNV 93
Query: 199 MIASSPTHVGY-----RGKS-DGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITI 252
+I + Y RGK D D I++ S IW+DH + DG +D S IT+
Sbjct: 94 IIRNIHFEGFYMEDDPRGKKYDFDYINVENSHHIWIDHITFVNGNDGAVDIKKYSNYITV 153
Query: 253 SNNYFSHHNEVMLLGHNDKYALDMGMQ---VTIAFNHFGVALVQRMPRCRRGYIHVVNND 309
S N F H++V L+G +DK + Q VT N+F L+QRMPR R G HV NN
Sbjct: 154 SWNKFVDHDKVSLVGSSDKEDPEQAGQAYKVTYHHNYFK-NLIQRMPRIRFGMAHVFNNF 212
Query: 310 FTS----------WEMYAIGGSANPTINSQGNRY 333
++ + +Y + + ++ +GN +
Sbjct: 213 YSMGLRTGVSGNVFPIYGVASAMGAKVHVEGNYF 246
>pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A,
Erwinia Chrysanthemi
pdb|1JRG|B Chain B, Crystal Structure Of The R3 Form Of Pectate Lyase A,
Erwinia Chrysanthemi
pdb|1JTA|A Chain A, Crystal Structure Of Pectate Lyase A (C2 Form)
Length = 361
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 64/138 (46%), Gaps = 25/138 (18%)
Query: 222 GSQKIWVDHCSLS--------YCT---------DGLIDAIMGSTGITISNNYFSHHNEVM 264
G+ +W+DH ++S Y T DG +D GS +TISN+ H++ M
Sbjct: 151 GAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTM 210
Query: 265 LLGHND-KYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTS-------WEMY 316
L+GHND A D G FN+ + +R PR R G IH NN F Y
Sbjct: 211 LIGHNDTNSAQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNNVFKGDAKDPVYRYQY 270
Query: 317 AIGGSANPTINSQGNRYT 334
+ G + ++ S+GN +T
Sbjct: 271 SFGIGTSGSVLSEGNSFT 288
>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47
Length = 416
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 19/114 (16%)
Query: 213 SDGDGISIFGSQKIWVDHCSLS-----------------YCTDGLIDAIMGSTGITISNN 255
S+ D ISI GS IW+DH + + DG +D S ITIS N
Sbjct: 187 SEYDSISIEGSSHIWIDHNTFTDGDHPDRSLGTYFGRPFQQHDGALDIKNSSDFITISYN 246
Query: 256 YFSHHNEVMLLGHNDKYALDMG-MQVTIAFNHFGVALVQRMPRCRRGYIHVVNN 308
F++H++V L+G +D D G ++VT+ N++ + QR+PR R G +H+ NN
Sbjct: 247 VFTNHDKVTLIGASDSRMADSGHLRVTLHHNYYK-NVTQRLPRVRFGQVHIYNN 299
>pdb|1BN8|A Chain A, Bacillus Subtilis Pectate Lyase
Length = 420
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 19/113 (16%)
Query: 216 DGISIFGSQKIWVDHCSLSYCT-----------------DGLIDAIMGSTGITISNNYFS 258
D I+I G IW+DHC+ + + DG DA G+ IT+S NY+
Sbjct: 205 DNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYH 264
Query: 259 HHNEVMLLGHNDKYALDMG-MQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDF 310
H++ + G +D D G +++T+ N + +VQR PR R G +HV NN +
Sbjct: 265 DHDKSSIFGSSDSKTSDDGKLKITLHHNRY-KNIVQRAPRVRFGQVHVYNNYY 316
>pdb|3KRG|A Chain A, Structural Insights Into Substrate Specificity And The
Anti Beta-Elimination Mechanism Of Pectate Lyase
Length = 399
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 19/113 (16%)
Query: 216 DGISIFGSQKIWVDHCSLSYCT-----------------DGLIDAIMGSTGITISNNYFS 258
D I+I G IW+DHC+ + + DG DA G+ IT+S NY+
Sbjct: 184 DNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYH 243
Query: 259 HHNEVMLLGHNDKYALDMG-MQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDF 310
H+ + G +D D G +++T+ N + +VQR PR R G +HV NN +
Sbjct: 244 DHDASSIFGSSDSKTSDDGKLKITLHHNRY-KNIVQRAPRVRFGQVHVYNNYY 295
>pdb|1OOC|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1OOC|B Chain B, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1PE9|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1PE9|B Chain B, Mutations In The T1.5 Loop Of Pectate Lyase A
Length = 361
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 25/138 (18%)
Query: 222 GSQKIWVDHCSLS--------YCT---------DGLIDAIMGSTGITISNNYFSHHNEVM 264
G+ +W+DH ++S Y T DG +D GS +TISN+ H++ M
Sbjct: 151 GAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTM 210
Query: 265 LLGHNDKY-ALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTS-------WEMY 316
L+GH+D + D G FN+ + +R PR R G IH NN F Y
Sbjct: 211 LIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNNVFKGDAKDPVYRYQY 270
Query: 317 AIGGSANPTINSQGNRYT 334
+ G + ++ S+GN +T
Sbjct: 271 SFGIGTSGSVLSEGNSFT 288
>pdb|2BSP|A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant
Length = 420
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 19/113 (16%)
Query: 216 DGISIFGSQKIWVDHCSLSYCT-----------------DGLIDAIMGSTGITISNNYFS 258
D I+I G IW+DHC+ + + DG DA G+ IT+S NY+
Sbjct: 205 DNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYH 264
Query: 259 HHNEVMLLGHNDKYALDMG-MQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDF 310
H++ + G +D D G +++T+ N + +VQ+ PR R G +HV NN +
Sbjct: 265 DHDKSSIFGSSDSKTSDDGKLKITLHHNRY-KNIVQKAPRVRFGQVHVYNNYY 316
>pdb|2NZM|A Chain A, Hexasaccharide I Bound To Bacillus Subtilis Pectate Lyase
pdb|2O04|A Chain A, Pectate Lyase Bound To Hexasaccharide Compound Ii
pdb|2O0V|A Chain A, Pectate Lyase Bound To Hexasaccharide Compound Iii
pdb|2O0W|A Chain A, Pectate Lyase Bound To Hexasaccharide Compound Iv
pdb|2O17|A Chain A, Pectate Lyase Bound To Hexasaccharide
pdb|2O1D|A Chain A, Pectate Lyase Bound To Trisaccharide
Length = 399
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 19/113 (16%)
Query: 216 DGISIFGSQKIWVDHCSLSYCT-----------------DGLIDAIMGSTGITISNNYFS 258
D I+I G IW+DHC+ + + DG DA G+ IT+S NY+
Sbjct: 184 DNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYH 243
Query: 259 HHNEVMLLGHNDKYALDMG-MQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDF 310
H++ + G +D D G +++T+ N + +VQ PR R G +HV NN +
Sbjct: 244 DHDKSSIFGSSDSKTSDDGKLKITLHHNRY-KNIVQAAPRVRFGQVHVYNNYY 295
>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris
Pv. Campestris Str. Atcc 33913
pdb|2QX3|B Chain B, Structure Of Pectate Lyase Ii From Xanthomonas Campestris
Pv. Campestris Str. Atcc 33913
Length = 330
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 57/117 (48%), Gaps = 17/117 (14%)
Query: 210 RGKSDGDGISIFGSQ-----KIWVDH----CSLSYCT-------DGLIDAIMGSTGITIS 253
+G D D IS+ G+ KIWVDH SL+ C+ DG ID G +T+S
Sbjct: 108 QGGEDADSISLEGNSSGEPSKIWVDHNTVFASLTKCSGAGDASFDGGIDMKKGVHHVTVS 167
Query: 254 NNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDF 310
NY ++ +V L G++D + + T N F + R+P RRG H+ NN F
Sbjct: 168 YNYVYNYQKVALNGYSDSDTKNSAARTTYHHNRF-ENVESRVPLQRRGLSHIYNNYF 223
>pdb|1PCL|A Chain A, Unusual Structural Features In The Parallel Beta-Helix In
Pectate Lyases
Length = 355
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 25/144 (17%)
Query: 216 DGISIFGSQKIWVDHCSLS--------YCT---------DGLIDAIMGSTGITISNNYFS 258
D I S +WVDH ++S Y T DG +D GS +TIS + F
Sbjct: 134 DAAVIDNSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQHDGALDIKKGSDYVTISYSRFE 193
Query: 259 HHNEVMLLGHNDKYALDMGMQVTIAF-NHFGVALVQRMPRCRRGYIHVVNNDFTS----- 312
H++ +L+GH+D ++ + F N+ + +R PR R G IH NN +
Sbjct: 194 LHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDRVTERAPRVRFGSIHAYNNVYLGDVKHS 253
Query: 313 --WEMYAIGGSANPTINSQGNRYT 334
+Y+ G + +I S+ N +T
Sbjct: 254 VYPYLYSFGLGTSGSILSESNSFT 277
>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris
pdb|2QXZ|B Chain B, Pectate Lyase R236f From Xanthomonas Campestris
Length = 330
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 17/117 (14%)
Query: 210 RGKSDGDGISIFGSQ-----KIWVDH----CSLSYCT-------DGLIDAIMGSTGITIS 253
+G D D IS+ G+ KIWVDH SL+ C+ DG ID G +T+S
Sbjct: 108 QGGEDADSISLEGNSSGEPSKIWVDHNTVFASLTKCSGAGDASFDGGIDMKKGVHHVTVS 167
Query: 254 NNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDF 310
NY ++ +V L G++D + + T N F + R+P R G H+ NN F
Sbjct: 168 YNYVYNYQKVALNGYSDSDTKNSAARTTYHHNRF-ENVESRVPLQRFGLSHIYNNYF 223
>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris
pdb|2QY1|B Chain B, Pectate Lyase A31g/r236f From Xanthomonas Campestris
Length = 330
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 17/117 (14%)
Query: 210 RGKSDGDGISIFGSQ-----KIWVDH----CSLSYCT-------DGLIDAIMGSTGITIS 253
+G D D IS+ G+ KIWVDH SL+ C+ DG ID G +T+S
Sbjct: 108 QGGEDADSISLEGNSSGEPSKIWVDHNTVFASLTKCSGAGDASFDGGIDMKKGVHHVTVS 167
Query: 254 NNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDF 310
NY ++ +V L G++D + + T N F + R+P R G H+ NN F
Sbjct: 168 YNYVYNYQKVALNGYSDSDTKNSAARTTYHHNRF-ENVESRVPLQRFGLSHIYNNYF 223
>pdb|3VMV|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From
Bacillus Sp. N165
pdb|3VMW|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From
Bacillus Sp. N165 In Complex With Trigalacturonate
Length = 326
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 14/109 (12%)
Query: 214 DGDGISIF---GSQKIWVDHCSL---------SYCTDGLIDAIMGSTGITISNNYFSHHN 261
+G+G +I S+ +W+DH S DGL+D + IT+S N F +H
Sbjct: 117 EGEGTAIEVTDDSKNVWIDHNEFYSEFPGNGDSDYYDGLVDMKRNAEYITVSWNKFENHW 176
Query: 262 EVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDF 310
+ ML+GH D +L ++T N+F L R+P R +H+ NN F
Sbjct: 177 KTMLVGHTDNASL-APDKITYHHNYFN-NLNSRVPLIRYADVHMFNNYF 223
>pdb|1PLU|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu+3 Ion
In The Putative Calcium Binding Site
pdb|1O88|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 11.2 With
30mm Ca2+
pdb|1O8D|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 11.2 With
5mm Ca2+
pdb|1O8E|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 11.2 With
1mm Ca2+
pdb|1O8F|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
30mm Ca2+
pdb|1O8G|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
5mm Ca2+
pdb|1O8H|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
0.3mm Ca2+ Added
pdb|1O8I|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
No Ca2+ Added
pdb|1O8J|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
30mm Ca2+
pdb|1O8K|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
20mm Ca2+
pdb|1O8L|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
5mm Ca2+
pdb|1O8M|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
No Ca2+ Added
pdb|1AIR|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi (Ec16) To A
Resolution Of 2.2 Angstroms With 128 Waters
pdb|2PEC|A Chain A, The Refined Three-Dimensional Structure Of Pectate Lyase C
From Erwinia Chrysanthemi At 2.2 Angstroms Resolution:
Implications For An Enzymatic Mechanism
Length = 353
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 19/122 (15%)
Query: 206 HVGYR--GKSDGDGISIFGSQKIWVDHCSL---SYCTDGL----------IDAIMGSTGI 250
+GY G DGD I + S +WVDH L ++ DG +D S +
Sbjct: 119 RIGYLPGGAKDGDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTV 178
Query: 251 TISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDF 310
T+S NY +V L G + D G +T N++ + R+P R G +H NN +
Sbjct: 179 TVSYNYIHGVKKVGLDGSSSS---DTGRNITYHHNYYN-DVNARLPLQRGGLVHAYNNLY 234
Query: 311 TS 312
T+
Sbjct: 235 TN 236
>pdb|2EWE|A Chain A, Crystal Structure Of Pectate Lyase C R218k Mutant In
Complex With Pentagalacturonic Acid
Length = 353
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 19/122 (15%)
Query: 206 HVGYR--GKSDGDGISIFGSQKIWVDHCSL---SYCTDGL----------IDAIMGSTGI 250
+GY G DGD I + S +WVDH L ++ DG +D S +
Sbjct: 119 RIGYLPGGAKDGDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTV 178
Query: 251 TISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDF 310
T+S NY +V L G + D G +T N++ + ++P R G +H NN +
Sbjct: 179 TVSYNYIHGVKKVGLDGSSSS---DTGRNITYHHNYYN-DVNAKLPLQRGGLVHAYNNLY 234
Query: 311 TS 312
T+
Sbjct: 235 TN 236
>pdb|1QCX|A Chain A, Pectin Lyase B
Length = 359
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 27/135 (20%)
Query: 215 GDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTG---ITISNNYFS------------H 259
GD I++ S +W+DH + + G ++G++ +TIS + H
Sbjct: 153 GDAITVDDSDLVWIDHVTTARI--GRQHIVLGTSADNRVTISYSLIDGRSDYSATCNGHH 210
Query: 260 HNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCR-RGYIHVVNNDFTSWEMYAI 318
+ V L G ND VT+ N+F L RMP+ + +H VNN F +++ +A
Sbjct: 211 YWGVYLDGSND--------MVTLKGNYF-YNLSGRMPKVQGNTLLHAVNNLFHNFDGHAF 261
Query: 319 GGSANPTINSQGNRY 333
+ ++GN +
Sbjct: 262 EIGTGGYVLAEGNVF 276
>pdb|3LHI|A Chain A, Crystal Structure Of Putative 6-
Phosphogluconolactonase(Yp_207848.1) From Neisseria
Gonorrhoeae Fa 1090 At 1.33 A Resolution
Length = 232
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 73 CWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQT 132
WH N A Q LAD QG L KGG + V+ +P +A+ Q
Sbjct: 4 VWHEYENAAEAAQSLADAVADALQGALDEKGGAVLAVSGGR-------SPIAFFNALSQK 56
Query: 133 EPIW----ITFASNMLIKLKH 149
+ W IT A ++ H
Sbjct: 57 DLDWKNVGITLADERIVPTNH 77
>pdb|1YEY|A Chain A, Crystal Structure Of L-Fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
pdb|1YEY|B Chain B, Crystal Structure Of L-Fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
pdb|1YEY|C Chain C, Crystal Structure Of L-Fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
pdb|1YEY|D Chain D, Crystal Structure Of L-Fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
Length = 444
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 132 TEPIWITFASNMLIKLKHELIINSYKTIDGR-GANVE 167
T P W+ ++ L++L E + + ++TI + GANV+
Sbjct: 193 TSPGWLGYSDEKLVRLAKEAVADGFRTIKLKVGANVQ 229
>pdb|2HNE|A Chain A, Crystal Structure Of L-fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
pdb|2HNE|B Chain B, Crystal Structure Of L-fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
pdb|2HNE|C Chain C, Crystal Structure Of L-fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
pdb|2HNE|D Chain D, Crystal Structure Of L-fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
Length = 436
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 132 TEPIWITFASNMLIKLKHELIINSYKTIDGR-GANVE 167
T P W+ ++ L++L E + + ++TI + GANV+
Sbjct: 190 TSPGWLGYSDEKLVRLAKEAVADGFRTIKLKVGANVQ 226
>pdb|2HXT|A Chain A, Crystal Structure Of L-Fuconate Dehydratase From
Xanthomonas Campestris Liganded With Mg++ And
D-Erythronohydroxamate
Length = 441
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 132 TEPIWITFASNMLIKLKHELIINSYKTIDGR-GANVE 167
T P W+ ++ L++L E + + ++TI + GANV+
Sbjct: 190 TSPGWLGYSDEKLVRLAKEAVADGFRTIKLKVGANVQ 226
>pdb|3GBT|A Chain A, Crystal Structure Of Gluconate Kinase From Lactobacillus
Acidophilus
pdb|3LL3|A Chain A, The Crystal Structure Of Ligand Bound Xylulose Kinase From
Lactobacillus Acidophilus
pdb|3LL3|B Chain B, The Crystal Structure Of Ligand Bound Xylulose Kinase From
Lactobacillus Acidophilus
Length = 504
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 211 GKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSH 259
G SDG +S G I DHC+L+ T G I I+ I S +YF +
Sbjct: 236 GASDG-YLSTIGVNAIDSDHCALNVGTSGAIRTIVDQPKIDPSASYFCY 283
>pdb|2HXU|A Chain A, Crystal Structure Of K220a Mutant Of L-Fuconate
Dehydratase From Xanthomonas Campestris Liganded With
Mg++ And L-Fuconate
Length = 441
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 132 TEPIWITFASNMLIKLKHELIINSYKTID-GRGANVE 167
T P W+ ++ L++L E + + ++TI GANV+
Sbjct: 190 TSPGWLGYSDEKLVRLAKEAVADGFRTIKLAVGANVQ 226
>pdb|1UAS|A Chain A, Crystal Structure Of Rice Alpha-Galactosidase
Length = 362
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 70 IDDCW-----HCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGT 124
IDDCW N+ NRQ A + KG ++ + +D+ +N PG+
Sbjct: 50 IDDCWAEYSRDSQGNFVPNRQTFPSGIKALAD-YVHAKGLKLGIYSDAGSQTCSNKMPGS 108
Query: 125 LRHAVIQTEPIWITFASNMLIKLKHE 150
L H + TFAS + LK++
Sbjct: 109 LDHEEQDVK----TFASWGVDYLKYD 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,508,739
Number of Sequences: 62578
Number of extensions: 417441
Number of successful extensions: 929
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 891
Number of HSP's gapped (non-prelim): 29
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)