Query 018853
Match_columns 349
No_of_seqs 288 out of 941
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 04:35:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018853.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018853hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3866 PelB Pectate lyase [Ca 100.0 8.2E-52 1.8E-56 394.0 22.1 216 97-340 47-280 (345)
2 PF00544 Pec_lyase_C: Pectate 100.0 2.7E-52 6E-57 382.3 13.4 189 137-333 3-200 (200)
3 smart00656 Amb_all Amb_all dom 100.0 6.3E-48 1.4E-52 351.1 20.9 171 149-336 10-189 (190)
4 TIGR03805 beta_helix_1 paralle 98.8 3.2E-07 7E-12 89.9 19.5 175 125-313 1-203 (314)
5 TIGR03805 beta_helix_1 paralle 98.3 4.2E-05 9E-10 75.2 17.8 139 174-319 80-248 (314)
6 PLN02218 polygalacturonase ADP 98.3 2.9E-05 6.4E-10 79.5 17.3 131 167-318 209-345 (431)
7 PLN03003 Probable polygalactur 98.3 3.9E-05 8.4E-10 79.0 17.7 100 213-316 186-289 (456)
8 PF14592 Chondroitinas_B: Chon 98.2 5.8E-05 1.3E-09 76.9 16.8 185 123-313 5-235 (425)
9 PLN02188 polygalacturonase/gly 98.2 6.8E-05 1.5E-09 76.3 16.5 121 133-288 154-277 (404)
10 PLN02793 Probable polygalactur 98.1 0.00011 2.5E-09 75.5 15.8 96 174-288 203-299 (443)
11 PLN02155 polygalacturonase 98.0 0.00018 3.9E-09 73.0 15.7 129 166-315 161-296 (394)
12 PF13229 Beta_helix: Right han 98.0 8E-05 1.7E-09 62.8 11.0 132 174-337 3-138 (158)
13 TIGR03808 RR_plus_rpt_1 twin-a 98.0 0.00038 8.2E-09 71.4 17.5 116 123-258 55-176 (455)
14 PLN03010 polygalacturonase 97.9 0.001 2.2E-08 67.9 19.1 113 213-333 205-321 (409)
15 PLN02218 polygalacturonase ADP 97.7 0.0016 3.5E-08 66.9 17.1 136 173-339 194-348 (431)
16 PF00295 Glyco_hydro_28: Glyco 97.6 0.00044 9.5E-09 68.1 10.4 104 174-298 118-222 (326)
17 PLN02480 Probable pectinestera 97.5 0.0036 7.9E-08 62.5 14.9 169 124-311 62-275 (343)
18 PLN03010 polygalacturonase 97.4 0.0095 2.1E-07 60.9 17.4 140 173-340 159-314 (409)
19 PF05048 NosD: Periplasmic cop 97.3 0.0091 2E-07 55.3 15.4 87 216-313 80-168 (236)
20 PF12708 Pectate_lyase_3: Pect 97.3 0.015 3.2E-07 52.3 16.0 103 124-242 20-139 (225)
21 PLN02197 pectinesterase 97.3 0.0043 9.3E-08 66.0 14.2 152 77-258 244-443 (588)
22 PLN03003 Probable polygalactur 97.3 0.009 1.9E-07 61.9 16.0 144 134-313 104-262 (456)
23 PF13229 Beta_helix: Right han 97.3 0.003 6.4E-08 53.2 10.4 128 174-333 26-158 (158)
24 PF05048 NosD: Periplasmic cop 97.2 0.0052 1.1E-07 56.9 12.6 129 174-336 38-168 (236)
25 PF01696 Adeno_E1B_55K: Adenov 97.2 0.031 6.8E-07 56.6 18.3 175 125-338 57-242 (386)
26 PLN02155 polygalacturonase 97.1 0.028 6.1E-07 57.2 17.5 142 135-313 107-269 (394)
27 TIGR03808 RR_plus_rpt_1 twin-a 97.1 0.023 5E-07 58.6 16.5 66 173-243 137-208 (455)
28 PLN02176 putative pectinestera 97.0 0.022 4.8E-07 57.0 15.2 121 124-258 53-207 (340)
29 PF04431 Pec_lyase_N: Pectate 96.9 0.00031 6.7E-09 52.6 1.0 30 28-57 19-56 (56)
30 PF00295 Glyco_hydro_28: Glyco 96.9 0.0062 1.4E-07 60.0 10.2 109 151-289 62-185 (326)
31 PLN02793 Probable polygalactur 96.8 0.066 1.4E-06 55.3 17.4 86 173-288 179-269 (443)
32 PLN02773 pectinesterase 96.8 0.33 7.2E-06 48.2 20.9 167 124-312 19-239 (317)
33 PLN02665 pectinesterase family 96.7 0.26 5.7E-06 49.9 19.9 120 124-258 82-238 (366)
34 PF07602 DUF1565: Protein of u 96.7 0.13 2.9E-06 49.3 17.0 188 124-335 17-241 (246)
35 PLN02682 pectinesterase family 96.4 0.066 1.4E-06 54.1 13.8 198 124-338 84-336 (369)
36 smart00656 Amb_all Amb_all dom 96.4 0.37 8E-06 44.1 17.3 136 155-313 45-189 (190)
37 PLN02304 probable pectinestera 96.2 0.12 2.6E-06 52.4 14.3 121 124-259 89-247 (379)
38 PLN02432 putative pectinestera 96.2 0.11 2.4E-06 51.1 13.6 166 124-312 25-229 (293)
39 PLN02745 Putative pectinestera 96.0 0.14 3E-06 54.9 14.2 116 124-259 299-452 (596)
40 PLN02416 probable pectinestera 96.0 0.11 2.5E-06 54.9 13.2 119 121-259 238-397 (541)
41 PLN02933 Probable pectinestera 95.9 0.15 3.2E-06 53.9 13.8 116 124-259 232-385 (530)
42 PLN02188 polygalacturonase/gly 95.9 0.1 2.2E-06 53.4 12.3 143 135-313 114-279 (404)
43 PLN02217 probable pectinestera 95.9 0.14 2.9E-06 55.6 13.7 119 121-259 258-417 (670)
44 PLN02170 probable pectinestera 95.9 0.13 2.8E-06 54.4 13.1 166 124-311 239-450 (529)
45 PLN02484 probable pectinestera 95.9 0.15 3.2E-06 54.6 13.8 117 124-259 286-440 (587)
46 PLN02916 pectinesterase family 95.9 0.17 3.7E-06 53.2 13.8 116 124-259 201-357 (502)
47 PLN02497 probable pectinestera 95.8 0.25 5.4E-06 49.4 14.3 122 124-258 46-201 (331)
48 PLN02488 probable pectinestera 95.8 0.18 3.8E-06 53.0 13.5 116 124-259 211-364 (509)
49 COG5434 PGU1 Endopygalactoruna 95.8 0.13 2.9E-06 54.3 12.6 100 174-298 264-375 (542)
50 PLN02634 probable pectinestera 95.8 0.24 5.3E-06 49.9 14.0 121 124-259 70-234 (359)
51 PLN02713 Probable pectinestera 95.8 0.18 3.8E-06 53.8 13.6 116 124-259 264-420 (566)
52 PLN02995 Probable pectinestera 95.7 0.17 3.7E-06 53.6 13.3 119 121-259 231-392 (539)
53 PLN02201 probable pectinestera 95.7 0.19 4.2E-06 53.0 13.5 116 124-259 220-373 (520)
54 PLN03043 Probable pectinestera 95.6 0.21 4.6E-06 52.9 13.6 116 124-259 237-393 (538)
55 PF01095 Pectinesterase: Pecti 95.6 0.22 4.8E-06 48.9 12.6 195 124-339 14-268 (298)
56 PF12708 Pectate_lyase_3: Pect 95.5 0.056 1.2E-06 48.5 7.7 122 156-292 98-221 (225)
57 PLN02671 pectinesterase 95.5 0.38 8.2E-06 48.6 14.3 169 124-311 73-293 (359)
58 PLN02468 putative pectinestera 95.5 0.24 5.3E-06 52.8 13.4 115 124-258 272-424 (565)
59 PLN02313 Pectinesterase/pectin 95.4 0.27 5.9E-06 52.6 13.7 119 121-259 283-442 (587)
60 PLN02990 Probable pectinestera 95.4 0.29 6.3E-06 52.2 13.8 119 121-259 267-427 (572)
61 PLN02506 putative pectinestera 95.4 0.22 4.9E-06 52.7 12.8 166 124-311 246-457 (537)
62 COG3420 NosD Nitrous oxidase a 95.4 0.26 5.6E-06 49.5 12.3 132 149-302 45-197 (408)
63 PLN02314 pectinesterase 95.3 0.24 5.2E-06 53.0 13.0 167 124-312 292-508 (586)
64 PLN02301 pectinesterase/pectin 95.3 0.26 5.5E-06 52.4 13.0 119 121-259 244-403 (548)
65 PLN02708 Probable pectinestera 95.3 0.28 6.1E-06 52.1 13.2 115 124-258 255-409 (553)
66 PRK10531 acyl-CoA thioesterase 94.0 1.9 4.2E-05 44.5 15.2 103 124-242 96-256 (422)
67 PF00544 Pec_lyase_C: Pectate 93.8 0.54 1.2E-05 43.3 9.9 115 173-310 77-200 (200)
68 COG3420 NosD Nitrous oxidase a 91.7 6.1 0.00013 40.0 14.4 70 174-259 123-192 (408)
69 COG3866 PelB Pectate lyase [Ca 83.4 12 0.00025 37.4 10.4 119 214-335 115-250 (345)
70 PF14592 Chondroitinas_B: Chon 82.7 3.1 6.8E-05 43.0 6.5 105 224-338 199-324 (425)
71 TIGR03804 para_beta_helix para 81.3 2.7 6E-05 28.9 3.9 41 217-259 1-41 (44)
72 COG5434 PGU1 Endopygalactoruna 80.8 7.8 0.00017 41.4 8.8 131 132-287 236-395 (542)
73 PF08480 Disaggr_assoc: Disagg 80.5 4.6 9.9E-05 37.5 6.1 88 248-337 2-110 (198)
74 PF03211 Pectate_lyase: Pectat 72.7 15 0.00033 34.7 7.4 48 212-260 93-141 (215)
75 PF08480 Disaggr_assoc: Disagg 65.0 1.2E+02 0.0027 28.3 12.1 73 222-295 32-113 (198)
76 PF12541 DUF3737: Protein of u 60.2 83 0.0018 30.9 9.8 71 222-312 154-224 (277)
77 PRK10123 wcaM putative colanic 57.9 20 0.00044 35.8 5.3 64 167-241 252-318 (464)
78 PF07602 DUF1565: Protein of u 53.0 64 0.0014 31.1 7.8 89 153-264 95-192 (246)
79 COG4001 Predicted metal-bindin 44.7 7.7 0.00017 32.0 0.2 38 41-78 5-56 (102)
80 PLN02698 Probable pectinestera 43.7 93 0.002 33.0 8.0 69 173-259 264-350 (497)
81 PF12541 DUF3737: Protein of u 38.7 73 0.0016 31.3 5.8 64 177-269 16-79 (277)
82 TIGR03804 para_beta_helix para 36.2 82 0.0018 21.4 4.3 41 174-236 2-42 (44)
83 PF01696 Adeno_E1B_55K: Adenov 20.4 9.6E+02 0.021 24.8 12.2 79 175-261 140-221 (386)
No 1
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.2e-52 Score=393.96 Aligned_cols=216 Identities=34% Similarity=0.466 Sum_probs=189.3
Q ss_pred CCCCCCCCceEEEcCCCCCCCCCCCChhHHHHhhcCCCeEEEEecCeEEEec------ceEEecCCceEEeeCceEEEEe
Q 018853 97 GTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQTEPIWITFASNMLIKLK------HELIINSYKTIDGRGANVEITG 170 (349)
Q Consensus 97 ~ttGG~gG~v~~VT~~~d~~~~~p~pGtLr~av~~~~P~~IvF~~~g~I~L~------~~L~i~snkTI~G~ga~i~I~G 170 (349)
+||||.||.+++|++.+| |..++.+.+|.+++.-+.|+|.+. .+|.+.|||||.|.|++.+|.|
T Consensus 47 GTtGG~~g~~v~v~ta~~----------l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG~g~~a~~~g 116 (345)
T COG3866 47 GTTGGSGGDIVTVRTAND----------LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVGSGADATLVG 116 (345)
T ss_pred CcccCCCCcEEEEeeHHH----------HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEEeeccccEEEe
Confidence 799999999999999987 577888889986666667889887 5677899999999999999999
Q ss_pred ccEEEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEe-eCCceEEEEeeEEec--------CCCCee
Q 018853 171 NGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISI-FGSQKIWVDHCSLSY--------CTDGLI 241 (349)
Q Consensus 171 ~g~l~i~~a~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi-~gs~nVWIDHcS~s~--------~~Dgli 241 (349)
+| |.|+.+.|||||||+|++... ++ ...|+|+| .+++|||||||+|+. ..||++
T Consensus 117 ~g-l~i~~a~NVIirNltf~~~~~-~d---------------~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~ 179 (345)
T COG3866 117 GG-LKIRDAGNVIIRNLTFEGFYQ-GD---------------PNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLV 179 (345)
T ss_pred ce-EEEEeCCcEEEEeeEEEeecc-CC---------------CCCCcEEeccCCeEEEEEeeEeccccccccccCCCccE
Confidence 99 999899999999999998641 11 12599999 579999999999999 689999
Q ss_pred eeeeCCceEEEEcceeccCCceeeccCCCCccCCCC-ceEEEEeeEecCCCcCcCcccCCCeEEEEcceEeCCc--ceEE
Q 018853 242 DAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMG-MQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTSWE--MYAI 318 (349)
Q Consensus 242 d~~~gs~~ITISnn~f~~h~k~~L~G~sd~~~~d~g-~~VTi~hN~F~~n~~~R~Pr~R~G~~HvvNN~~~~~~--~yai 318 (349)
|++.++++||||||+|++|+|.+|+|.+|+...+.+ .+||+||||| +|+.||+||+|||.+||+||||.... .||+
T Consensus 180 Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyF-kn~~qR~PriRfG~vHvyNNYy~~~~~~g~a~ 258 (345)
T COG3866 180 DIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYF-KNLYQRGPRIRFGMVHVYNNYYEGNPKFGVAI 258 (345)
T ss_pred EeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccc-ccccccCCceEeeEEEEeccccccCcccceEE
Confidence 999999999999999999999999999998665555 8999999999 58999999999999999999999665 4566
Q ss_pred ecCCCceEEEEcceEeCCCCCC
Q 018853 319 GGSANPTINSQGNRYTAPPDDN 340 (349)
Q Consensus 319 gg~~~~~i~~egN~F~~~~~~~ 340 (349)
+-+..++|++|+|||+....+.
T Consensus 259 ~iG~~AkiyvE~NyF~~~~~~~ 280 (345)
T COG3866 259 TIGTSAKIYVENNYFENGSEGL 280 (345)
T ss_pred eeccceEEEEecceeccCCCCc
Confidence 6555699999999999965543
No 2
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=100.00 E-value=2.7e-52 Score=382.28 Aligned_cols=189 Identities=40% Similarity=0.660 Sum_probs=161.1
Q ss_pred EEEecCeEEEecceEEecCCceEEeeCceEEEEeccEEEEe-eeccEEEEeeEEEeeccCCCccccCCCCccccCCCCCC
Q 018853 137 ITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTLQ-YVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDG 215 (349)
Q Consensus 137 IvF~~~g~I~L~~~L~i~snkTI~G~ga~i~I~G~g~l~i~-~a~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dg 215 (349)
+||+++|+|+++.+|.|.|||||+|+|++++|++.| +.+. +++|||||||+|+++ .++..|...+.....++
T Consensus 3 ~ii~~~g~i~~~~~i~v~snkTi~G~g~~~~i~~~G-~~i~~~~~NVIirNl~~~~~------~~~~~~~~~~~~~~~~~ 75 (200)
T PF00544_consen 3 LIIKVSGTIDLKSPISVGSNKTIIGIGAGATIIGGG-LRIIKGASNVIIRNLRFRNV------PVDPGPDWSGDGDSSDG 75 (200)
T ss_dssp EEEEEHHCCHHHCEEEEESSEEEEEETTTTEEESSE-EEEEESCEEEEEES-EEECE------EEECSTEEETTEEECS-
T ss_pred EEEEEEeEEccCCeEEECCCcEEEEccCCeEEECce-EEEecCCCeEEEECCEEEec------cccCCcccCCCccccCC
Confidence 355567899999999999999999999999999988 6665 899999999999985 12223322233345689
Q ss_pred CcEEeeCCceEEEEeeEEecC--------CCCeeeeeeCCceEEEEcceeccCCceeeccCCCCccCCCCceEEEEeeEe
Q 018853 216 DGISIFGSQKIWVDHCSLSYC--------TDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHF 287 (349)
Q Consensus 216 DaIsi~gs~nVWIDHcS~s~~--------~Dglid~~~gs~~ITISnn~f~~h~k~~L~G~sd~~~~d~g~~VTi~hN~F 287 (349)
|+|++++++|||||||+|+|+ .||++|++.++++||||||+|.+|+|++|+|++|+...+.+++||+|||+|
T Consensus 76 Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f 155 (200)
T PF00544_consen 76 DAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYF 155 (200)
T ss_dssp -SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-EE
T ss_pred CeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCCceEEEEeEEE
Confidence 999999999999999999999 999999999999999999999999999999999888888889999999999
Q ss_pred cCCCcCcCcccCCCeEEEEcceEeCCcceEEecCCCceEEEEcceE
Q 018853 288 GVALVQRMPRCRRGYIHVVNNDFTSWEMYAIGGSANPTINSQGNRY 333 (349)
Q Consensus 288 ~~n~~~R~Pr~R~G~~HvvNN~~~~~~~yaigg~~~~~i~~egN~F 333 (349)
. ++.+|+||+|+|++|+|||+|+++..|+++.++++++++|+|||
T Consensus 156 ~-~~~~R~P~~r~G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 156 A-NTNSRNPRVRFGYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp E-EEEE-TTEECSCEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred C-chhhCCCcccccEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence 5 79999999999999999999999999999999999999999999
No 3
>smart00656 Amb_all Amb_all domain.
Probab=100.00 E-value=6.3e-48 Score=351.05 Aligned_cols=171 Identities=60% Similarity=0.892 Sum_probs=158.1
Q ss_pred ceEEecCCceEEeeCceEEEEeccEEEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEeeCCceEEE
Q 018853 149 HELIINSYKTIDGRGANVEITGNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWV 228 (349)
Q Consensus 149 ~~L~i~snkTI~G~ga~i~I~G~g~l~i~~a~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~gs~nVWI 228 (349)
.+|.|.|||||+|+|++++|+|++ |+++.++|||||||+|++..+. + ..++|+|+++++++|||
T Consensus 10 ~~i~v~snkTI~G~~~~~~i~g~g-l~i~~~~NVIirnl~i~~~~~~-----------~----~~~~D~i~~~~~~~VwI 73 (190)
T smart00656 10 GTIIINSNKTIDGRGSKVEIKGGG-LTIKSVSNVIIRNLTIHDPKPV-----------Y----GSDGDAISIDGSSNVWI 73 (190)
T ss_pred ceEEeCCCCEEEecCCCcEEEeeE-EEEEecceEEEeCCEEECCccC-----------C----CCCCCEEEEeCCCeEEE
Confidence 578899999999999999999988 9998899999999999976431 1 24789999999999999
Q ss_pred EeeEEecC---------CCCeeeeeeCCceEEEEcceeccCCceeeccCCCCccCCCCceEEEEeeEecCCCcCcCcccC
Q 018853 229 DHCSLSYC---------TDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCR 299 (349)
Q Consensus 229 DHcS~s~~---------~Dglid~~~gs~~ITISnn~f~~h~k~~L~G~sd~~~~d~g~~VTi~hN~F~~n~~~R~Pr~R 299 (349)
|||+|+|+ .|+++|++.++++||||||+|.+|+|++|+|++|+...+..++||+|||+|+ ++.+|+||+|
T Consensus 74 DHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~-~~~~R~P~~r 152 (190)
T smart00656 74 DHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFG-NLRQRAPRVR 152 (190)
T ss_pred EccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEEEEccCCCccccccceEEEECcEEc-CcccCCCccc
Confidence 99999998 8999999999999999999999999999999998876655689999999997 6999999999
Q ss_pred CCeEEEEcceEeCCcceEEecCCCceEEEEcceEeCC
Q 018853 300 RGYIHVVNNDFTSWEMYAIGGSANPTINSQGNRYTAP 336 (349)
Q Consensus 300 ~G~~HvvNN~~~~~~~yaigg~~~~~i~~egN~F~~~ 336 (349)
+|++|++||||++|..|+++.+.++++++|+|||+..
T Consensus 153 ~g~~hv~NN~~~n~~~~~~~~~~~~~v~~E~N~F~~~ 189 (190)
T smart00656 153 FGYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP 189 (190)
T ss_pred CCEEEEEeeEEeCcccEeEecCCCcEEEEECeEEECC
Confidence 9999999999999999999999999999999999875
No 4
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.84 E-value=3.2e-07 Score=89.94 Aligned_cols=175 Identities=16% Similarity=0.198 Sum_probs=95.8
Q ss_pred HHHHhhcCCCe-EEEEecCeEEEecceEEec-CCceEEeeCce-EEEEe------ccEEEEeeeccEEEEeeEEEeeccC
Q 018853 125 LRHAVIQTEPI-WITFASNMLIKLKHELIIN-SYKTIDGRGAN-VEITG------NGCLTLQYVSHVIIHNVHIHHCKPS 195 (349)
Q Consensus 125 Lr~av~~~~P~-~IvF~~~g~I~L~~~L~i~-snkTI~G~ga~-i~I~G------~g~l~i~~a~NVIIrnL~I~~~~p~ 195 (349)
|++|+.+.+|- +|++. .|+-++++.|.|. +++||.|.|.. ..|.+ +..+.+ .++||.|++++|++....
T Consensus 1 iQ~Ai~~A~~GDtI~l~-~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~~~~~~~~~~i~v-~a~~VtI~~ltI~~~~~~ 78 (314)
T TIGR03805 1 LQEALIAAQPGDTIVLP-EGVFQFDRTLSLDADGVTIRGAGMDETILDFSGQVGGAEGLLV-TSDDVTLSDLAVENTKGD 78 (314)
T ss_pred CHhHHhhCCCCCEEEEC-CCEEEcceeEEEeCCCeEEEecCCCccEEecccCCCCCceEEE-EeCCeEEEeeEEEcCCCC
Confidence 46677766665 55554 5788877888886 89999998864 44542 223555 588999999998764210
Q ss_pred CCccccCCCCcc-------ccC----CCCCCCcEEeeCCceEEEEeeEEecCCC-CeeeeeeCCceEEEEcceeccCCce
Q 018853 196 GNTMIASSPTHV-------GYR----GKSDGDGISIFGSQKIWVDHCSLSYCTD-GLIDAIMGSTGITISNNYFSHHNEV 263 (349)
Q Consensus 196 ~~~~v~~~~~~~-------G~r----~~~dgDaIsi~gs~nVWIDHcS~s~~~D-glid~~~gs~~ITISnn~f~~h~k~ 263 (349)
.-.++.+. .. .|. ....++||.+..++++-|.+|.++...| |.. ...|++++|++|.+.+-..+
T Consensus 79 -GI~v~~s~-~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIy--v~~s~~~~v~nN~~~~n~~G 154 (314)
T TIGR03805 79 -GVKVKGSD-GIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIY--VGQSQNIVVRNNVAEENVAG 154 (314)
T ss_pred -eEEEeCCC-CEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEE--ECCCCCeEEECCEEccCcce
Confidence 00111110 00 000 0133466666666666666666666555 332 33566666666666543333
Q ss_pred eeccCCCCccCCCCceEEEEeeEecCCCcCc-------CcccCCCeEEEEcceEeCC
Q 018853 264 MLLGHNDKYALDMGMQVTIAFNHFGVALVQR-------MPRCRRGYIHVVNNDFTSW 313 (349)
Q Consensus 264 ~L~G~sd~~~~d~g~~VTi~hN~F~~n~~~R-------~Pr~R~G~~HvvNN~~~~~ 313 (349)
..+-.+ .++.+.+|.+..|...= .|.+-...+.+.||.+.+.
T Consensus 155 I~i~~S--------~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n 203 (314)
T TIGR03805 155 IEIENS--------QNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDN 203 (314)
T ss_pred EEEEec--------CCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEECC
Confidence 222222 24566666665332110 1112123677777777644
No 5
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.31 E-value=4.2e-05 Score=75.16 Aligned_cols=139 Identities=17% Similarity=0.126 Sum_probs=87.2
Q ss_pred EEEeeeccEEEEeeEEEeecc--------------CCCccccCCCCccccCCCCCCCcEEeeCCceEEEEeeEEecCCCC
Q 018853 174 LTLQYVSHVIIHNVHIHHCKP--------------SGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDG 239 (349)
Q Consensus 174 l~i~~a~NVIIrnL~I~~~~p--------------~~~~~v~~~~~~~G~r~~~dgDaIsi~gs~nVWIDHcS~s~~~Dg 239 (349)
|.+++++|++|+++++..... ..+..|+...- + ...++||.+..++++.|.+|.+.....|
T Consensus 80 I~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i----~-g~~d~GIyv~~s~~~~v~nN~~~~n~~G 154 (314)
T TIGR03805 80 VKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYV----R-GASDAGIYVGQSQNIVVRNNVAEENVAG 154 (314)
T ss_pred EEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEE----E-CCCcccEEECCCCCeEEECCEEccCcce
Confidence 777788999999999863210 00011111110 1 1234689999999999999999998888
Q ss_pred eeeeeeCCceEEEEcceeccCCceeeccCCCCccCCCCceEEEEeeEecCCCcCc----------CcccCC------CeE
Q 018853 240 LIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQR----------MPRCRR------GYI 303 (349)
Q Consensus 240 lid~~~gs~~ITISnn~f~~h~k~~L~G~sd~~~~d~g~~VTi~hN~F~~n~~~R----------~Pr~R~------G~~ 303 (349)
+. ...|.++.|.+|.+.+-..+.++-..+.-..-...++.+++|.|..+.... .|.-+. -.+
T Consensus 155 I~--i~~S~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~~~~~g~Gi~i~~~~~v 232 (314)
T TIGR03805 155 IE--IENSQNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDNNTPNFAPAGSIVASVPAGTGVVVMANRDV 232 (314)
T ss_pred EE--EEecCCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEECCCCCCCcccCCceecCCCCcEEEEEcccce
Confidence 76 456899999999999765555553222111111248999999997542211 111110 146
Q ss_pred EEEcceEeCCcceEEe
Q 018853 304 HVVNNDFTSWEMYAIG 319 (349)
Q Consensus 304 HvvNN~~~~~~~yaig 319 (349)
.+.||.+++....++.
T Consensus 233 ~I~~N~i~~n~~~~i~ 248 (314)
T TIGR03805 233 EIFGNVISNNDTANVL 248 (314)
T ss_pred EEECCEEeCCcceeEE
Confidence 8888888877665553
No 6
>PLN02218 polygalacturonase ADPG
Probab=98.31 E-value=2.9e-05 Score=79.48 Aligned_cols=131 Identities=19% Similarity=0.211 Sum_probs=87.7
Q ss_pred EEEecc--EEEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEeeCCceEEEEeeEEecCCCCeeeee
Q 018853 167 EITGNG--CLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAI 244 (349)
Q Consensus 167 ~I~G~g--~l~i~~a~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~gs~nVWIDHcS~s~~~Dglid~~ 244 (349)
+|...+ .+.+..++||.|+||+|.. |. .....|||.+.+++||.|.+|.++.+ |..+.++
T Consensus 209 tl~nSp~w~i~~~~~~nV~i~~v~I~a--~~---------------~spNTDGIdi~ss~nV~I~n~~I~tG-DDcIaIk 270 (431)
T PLN02218 209 RVRNAQQIQISIEKCSNVQVSNVVVTA--PA---------------DSPNTDGIHITNTQNIRVSNSIIGTG-DDCISIE 270 (431)
T ss_pred EEEcCCCEEEEEEceeeEEEEEEEEeC--CC---------------CCCCCCcEeecccceEEEEccEEecC-CceEEec
Confidence 444443 3445578899999998863 11 12357999999999999999999987 5566688
Q ss_pred eCCceEEEEcceeccCCceeeccCCCCccCCCC-ceEEEEeeEecCCCcCcCcccC---CCeEEEEcceEeCCcceEE
Q 018853 245 MGSTGITISNNYFSHHNEVMLLGHNDKYALDMG-MQVTIAFNHFGVALVQRMPRCR---RGYIHVVNNDFTSWEMYAI 318 (349)
Q Consensus 245 ~gs~~ITISnn~f~~h~k~~L~G~sd~~~~d~g-~~VTi~hN~F~~n~~~R~Pr~R---~G~~HvvNN~~~~~~~yai 318 (349)
.++++|+|+||.+. +..+.-+|+--.+....+ .+|++.++.|. ++ .+.=|++ .|.-.+-|=.|.|..|..+
T Consensus 271 sgs~nI~I~n~~c~-~GHGisIGS~g~~~~~~~V~nV~v~n~~~~-~t-~nGvRIKT~~Gg~G~v~nI~f~ni~m~~V 345 (431)
T PLN02218 271 SGSQNVQINDITCG-PGHGISIGSLGDDNSKAFVSGVTVDGAKLS-GT-DNGVRIKTYQGGSGTASNIIFQNIQMENV 345 (431)
T ss_pred CCCceEEEEeEEEE-CCCCEEECcCCCCCCCceEEEEEEEccEEe-cC-CcceEEeecCCCCeEEEEEEEEeEEEEcc
Confidence 89999999999996 344567887543332223 57999999995 33 3444443 2334455555555555443
No 7
>PLN03003 Probable polygalacturonase At3g15720
Probab=98.29 E-value=3.9e-05 Score=79.03 Aligned_cols=100 Identities=18% Similarity=0.181 Sum_probs=69.3
Q ss_pred CCCCcEEeeCCceEEEEeeEEecCCCCeeeeeeCCceEEEEcceeccCCceeeccCCCCccCCCC-ceEEEEeeEecCCC
Q 018853 213 SDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMG-MQVTIAFNHFGVAL 291 (349)
Q Consensus 213 ~dgDaIsi~gs~nVWIDHcS~s~~~Dglid~~~gs~~ITISnn~f~~h~k~~L~G~sd~~~~d~g-~~VTi~hN~F~~n~ 291 (349)
...|||.+..++||+|.+|.++.+.| .+.++.++++|+|+||.+.. ..+.-+|+.-++....+ .+|++.++.|. ++
T Consensus 186 pNTDGIDi~~S~nV~I~n~~I~tGDD-CIaiksgs~NI~I~n~~c~~-GHGISIGSlg~~g~~~~V~NV~v~n~~~~-~T 262 (456)
T PLN03003 186 PNTDGIDVGASSNVVIQDCIIATGDD-CIAINSGTSNIHISGIDCGP-GHGISIGSLGKDGETATVENVCVQNCNFR-GT 262 (456)
T ss_pred CCCCcEeecCcceEEEEecEEecCCC-eEEeCCCCccEEEEeeEEEC-CCCeEEeeccCCCCcceEEEEEEEeeEEE-CC
Confidence 46799999999999999999988755 45578899999999999864 34567887644432223 67999999995 33
Q ss_pred cCcCcccC---CCeEEEEcceEeCCcce
Q 018853 292 VQRMPRCR---RGYIHVVNNDFTSWEMY 316 (349)
Q Consensus 292 ~~R~Pr~R---~G~~HvvNN~~~~~~~y 316 (349)
.+.=|++ .|.-.+-|=.|.|..|-
T Consensus 263 -~nGvRIKT~~Gg~G~v~nItf~nI~m~ 289 (456)
T PLN03003 263 -MNGARIKTWQGGSGYARMITFNGITLD 289 (456)
T ss_pred -CcEEEEEEeCCCCeEEEEEEEEeEEec
Confidence 3444443 23334555555555443
No 8
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.21 E-value=5.8e-05 Score=76.93 Aligned_cols=185 Identities=16% Similarity=0.179 Sum_probs=83.7
Q ss_pred hhHHHHhhcCCCe-EEEEecCeEEEecceEEe------cCCceEEeeCc-eEEEEeccEEEEeeeccEEEEeeEEEeecc
Q 018853 123 GTLRHAVIQTEPI-WITFASNMLIKLKHELII------NSYKTIDGRGA-NVEITGNGCLTLQYVSHVIIHNVHIHHCKP 194 (349)
Q Consensus 123 GtLr~av~~~~P~-~IvF~~~g~I~L~~~L~i------~snkTI~G~ga-~i~I~G~g~l~i~~a~NVIIrnL~I~~~~p 194 (349)
-+|..||.+-.|= +|++ .+|+-+ ..+|.+ ...+||..+.+ .+.|.|...|+|. .+.++|.+|.|++..+
T Consensus 5 ~~lq~Ai~~a~pGD~I~L-~~Gty~-~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G~s~l~i~-G~yl~v~GL~F~ng~~ 81 (425)
T PF14592_consen 5 AELQSAIDNAKPGDTIVL-ADGTYK-DVEIVFKGSGTAAKPITLRAENPGKVVITGESNLRIS-GSYLVVSGLKFKNGYT 81 (425)
T ss_dssp HHHHHHHHH--TT-EEEE--SEEEE-T-EEEE-S--BTTB-EEEEESSTTSEEEEES-EEEE--SSSEEEES-EEEEE--
T ss_pred HHHHHHHHhCCCCCEEEE-CCceee-cceEEEEecccCCCCEEEEecCCCeEEEecceeEEEE-eeeEEEeCeEEecCCC
Confidence 3589999865553 3443 356665 335555 25789998855 5999999889984 8999999999998754
Q ss_pred CCCccc--cCCCCc-cccC------------C-CCCCCcEEe----eCCceEEEEeeEEecC-CCC-eeeee-------e
Q 018853 195 SGNTMI--ASSPTH-VGYR------------G-KSDGDGISI----FGSQKIWVDHCSLSYC-TDG-LIDAI-------M 245 (349)
Q Consensus 195 ~~~~~v--~~~~~~-~G~r------------~-~~dgDaIsi----~gs~nVWIDHcS~s~~-~Dg-lid~~-------~ 245 (349)
.....+ |.+... ++.. . ..+.+...+ -.++|--||||+|..- ..| .+-+. .
T Consensus 82 ~~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~~~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~~~G~~l~V~~~~~~~~~ 161 (425)
T PF14592_consen 82 PTGAVISFRNGGDASYANHCRLTNCVIDDFNNPDREESDNWVTIYSLYGKHNRVDHNYFQGKTNRGPTLAVRVILNGSQS 161 (425)
T ss_dssp -TTT--TTS--SEEE-SSS-EEES-EEES--SS-S-SEEE---TT-----S-EEES-EEE---SSS-SEEE--S--SS--
T ss_pred CCCceEEeecCCCcceecceEEEeEEeeccCCcccccCceEEEEEEeeccCceEEccEeeccccCCcEEEEEecccCccc
Confidence 322211 111110 0000 0 011122233 2356667899999973 223 22222 1
Q ss_pred CCceEEEEcceecc-------CCceeeccCCCCccCCCCceEEEEeeEecCCCcCcCccc--CCCeEEEEcceEeCC
Q 018853 246 GSTGITISNNYFSH-------HNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRC--RRGYIHVVNNDFTSW 313 (349)
Q Consensus 246 gs~~ITISnn~f~~-------h~k~~L~G~sd~~~~d~g~~VTi~hN~F~~n~~~R~Pr~--R~G~~HvvNN~~~~~ 313 (349)
-..+-+|.+|+|.+ ..+++-+|.|..... .-+.++.+|+|. +|.+-.--+ +-+.--+.||.|++-
T Consensus 162 ~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~--~s~t~Ve~NlFe-~cdGE~EIISvKS~~N~ir~Ntf~es 235 (425)
T PF14592_consen 162 IANYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMS--DSNTTVENNLFE-RCDGEVEIISVKSSDNTIRNNTFRES 235 (425)
T ss_dssp -----EEES-EEE-E---SSS---SEEE-SSTT-B-------EEES-EEE-EE-SSSEEEEEESBT-EEES-EEES-
T ss_pred cccCceEEeccccccCCCCCCCceeEEEeccccccc--ccceeeecchhh-hcCCceeEEEeecCCceEeccEEEec
Confidence 23477899999994 345777787643322 247888999995 565543222 234555666666654
No 9
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=98.18 E-value=6.8e-05 Score=76.25 Aligned_cols=121 Identities=17% Similarity=0.241 Sum_probs=86.3
Q ss_pred CCeEEEEecCeEEEecceEEecCCceEEeeCceEEEEecc--EEEEeeeccEEEEeeEEEeeccCCCccccCCCCccccC
Q 018853 133 EPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNG--CLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYR 210 (349)
Q Consensus 133 ~P~~IvF~~~g~I~L~~~L~i~snkTI~G~ga~i~I~G~g--~l~i~~a~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r 210 (349)
.|+.|.|... .+++|.| ++|...+ .+.+..++||.|++|+|.. |.
T Consensus 154 rP~~i~f~~~------------~nv~i~g----itl~nSp~w~i~~~~~~~v~i~~v~I~~--~~--------------- 200 (404)
T PLN02188 154 LPTSVKFVNM------------NNTVVRG----ITSVNSKFFHIALVECRNFKGSGLKISA--PS--------------- 200 (404)
T ss_pred CceEEEEEee------------eeEEEeC----eEEEcCCCeEEEEEccccEEEEEEEEeC--CC---------------
Confidence 5777777432 2444444 3455544 3455589999999999974 11
Q ss_pred CCCCCCcEEeeCCceEEEEeeEEecCCCCeeeeeeCCceEEEEcceeccCCceeeccCCCCccCCCC-ceEEEEeeEec
Q 018853 211 GKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMG-MQVTIAFNHFG 288 (349)
Q Consensus 211 ~~~dgDaIsi~gs~nVWIDHcS~s~~~Dglid~~~gs~~ITISnn~f~~h~k~~L~G~sd~~~~d~g-~~VTi~hN~F~ 288 (349)
.....|||.+..++||+|.+|.++.+.| .+.++.++++|+|+|+.+.. ..++-+|+.-.+....+ .+|++.++.|.
T Consensus 201 ~spNtDGidi~~s~nV~I~n~~I~~GDD-cIaiksg~~nI~I~n~~c~~-ghGisiGSlG~~~~~~~V~nV~v~n~~~~ 277 (404)
T PLN02188 201 DSPNTDGIHIERSSGVYISDSRIGTGDD-CISIGQGNSQVTITRIRCGP-GHGISVGSLGRYPNEGDVTGLVVRDCTFT 277 (404)
T ss_pred CCCCCCcEeeeCcccEEEEeeEEeCCCc-EEEEccCCccEEEEEEEEcC-CCcEEeCCCCCCCcCCcEEEEEEEeeEEE
Confidence 0135799999999999999999998877 55577899999999999853 34567887543333233 57999999995
No 10
>PLN02793 Probable polygalacturonase
Probab=98.07 E-value=0.00011 Score=75.47 Aligned_cols=96 Identities=17% Similarity=0.166 Sum_probs=71.4
Q ss_pred EEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEeeCCceEEEEeeEEecCCCCeeeeeeCCceEEEE
Q 018853 174 LTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITIS 253 (349)
Q Consensus 174 l~i~~a~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~gs~nVWIDHcS~s~~~Dglid~~~gs~~ITIS 253 (349)
+.+..++||.|++|+|..- . .....|||.+..++||+|.+|.+..+.| .+.++.++++|+|+
T Consensus 203 i~~~~~~nv~i~~l~I~~p--~---------------~spNTDGIdi~~s~nV~I~n~~I~~gDD-cIaik~~s~nI~I~ 264 (443)
T PLN02793 203 IAFTNCRRVTISGLKVIAP--A---------------TSPNTDGIHISASRGVVIKDSIVRTGDD-CISIVGNSSRIKIR 264 (443)
T ss_pred EEEEccCcEEEEEEEEECC--C---------------CCCCCCcEeeeccceEEEEeCEEeCCCC-eEEecCCcCCEEEE
Confidence 4455789999999999741 1 1235799999999999999999987655 55577789999999
Q ss_pred cceeccCCceeeccCCCCccCCCC-ceEEEEeeEec
Q 018853 254 NNYFSHHNEVMLLGHNDKYALDMG-MQVTIAFNHFG 288 (349)
Q Consensus 254 nn~f~~h~k~~L~G~sd~~~~d~g-~~VTi~hN~F~ 288 (349)
||.+.. ..+.-+|+.-.+....+ .+|++.++.|.
T Consensus 265 n~~c~~-GhGisIGSlg~~~~~~~V~nV~v~n~~~~ 299 (443)
T PLN02793 265 NIACGP-GHGISIGSLGKSNSWSEVRDITVDGAFLS 299 (443)
T ss_pred EeEEeC-CccEEEecccCcCCCCcEEEEEEEccEEe
Confidence 999864 33466887533322223 57999999995
No 11
>PLN02155 polygalacturonase
Probab=98.01 E-value=0.00018 Score=72.95 Aligned_cols=129 Identities=19% Similarity=0.182 Sum_probs=86.6
Q ss_pred EEEEecc--EEEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEeeCCceEEEEeeEEecCCCCeeee
Q 018853 166 VEITGNG--CLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDA 243 (349)
Q Consensus 166 i~I~G~g--~l~i~~a~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~gs~nVWIDHcS~s~~~Dglid~ 243 (349)
++|+..+ .+.+.+++||.|+||+|.. |. .....|||.+..++||+|.+|.++.+.| .+.+
T Consensus 161 itl~nSp~w~i~~~~~~nv~i~~v~I~~--p~---------------~~~NtDGidi~~s~nV~I~~~~I~~gDD-cIai 222 (394)
T PLN02155 161 VKSMNSQVSHMTLNGCTNVVVRNVKLVA--PG---------------NSPNTDGFHVQFSTGVTFTGSTVQTGDD-CVAI 222 (394)
T ss_pred eEEEcCCCeEEEEECeeeEEEEEEEEEC--CC---------------CCCCCCccccccceeEEEEeeEEecCCc-eEEc
Confidence 4455444 2455588999999999984 11 0135799999999999999999998877 4457
Q ss_pred eeCCceEEEEcceeccCCceeeccCCCCccCCCC-ceEEEEeeEecCCCcCcCcccC----CCeEEEEcceEeCCcc
Q 018853 244 IMGSTGITISNNYFSHHNEVMLLGHNDKYALDMG-MQVTIAFNHFGVALVQRMPRCR----RGYIHVVNNDFTSWEM 315 (349)
Q Consensus 244 ~~gs~~ITISnn~f~~h~k~~L~G~sd~~~~d~g-~~VTi~hN~F~~n~~~R~Pr~R----~G~~HvvNN~~~~~~~ 315 (349)
+.++++|+|++|.+.. ..++-+|+.-.+....+ .+|++.++.|. +. .+.=|++ .+.-.|-|=.|.|..|
T Consensus 223 k~gs~nI~I~n~~c~~-GhGisIGS~g~~~~~~~V~nV~v~n~~~~-~t-~~GirIKT~~~~~gG~v~nI~f~ni~m 296 (394)
T PLN02155 223 GPGTRNFLITKLACGP-GHGVSIGSLAKELNEDGVENVTVSSSVFT-GS-QNGVRIKSWARPSTGFVRNVFFQDLVM 296 (394)
T ss_pred CCCCceEEEEEEEEEC-CceEEeccccccCCCCcEEEEEEEeeEEe-CC-CcEEEEEEecCCCCEEEEEEEEEeEEE
Confidence 7889999999999874 34577887533322223 57999999995 33 2343442 1123344555555544
No 12
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.00 E-value=8e-05 Score=62.79 Aligned_cols=132 Identities=23% Similarity=0.332 Sum_probs=72.9
Q ss_pred EEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEeeCCceEEEEeeEEecCCCCeeeeeeCCceEEEE
Q 018853 174 LTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITIS 253 (349)
Q Consensus 174 l~i~~a~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~gs~nVWIDHcS~s~~~Dglid~~~gs~~ITIS 253 (349)
|.+....++.|++.+|+++ .++||.+.++..+.|+.|+|.+...|+. ..+..+++++
T Consensus 3 i~i~~~~~~~i~~~~i~~~---------------------~~~gi~~~~~~~~~i~n~~i~~~~~gi~--~~~~~~~~i~ 59 (158)
T PF13229_consen 3 ISINNGSNVTIRNCTISNN---------------------GGDGIHVSGSSNITIENCTISNGGYGIY--VSGGSNVTIS 59 (158)
T ss_dssp EEETTCEC-EEESEEEESS---------------------SSECEEE-SSCESEEES-EEESSTTSEE--EECCES-EEE
T ss_pred EEEECCcCeEEeeeEEEeC---------------------CCeEEEEEcCCCeEEECeEEECCCcEEE--EecCCCeEEE
Confidence 6777788899999999864 3578888888888888888888555554 3455788888
Q ss_pred cceeccCCceeeccCCCCccCCCCceEEEEeeEecCCCcCcCcccC--CCeEEEEcceEeCCcceEEe--cCCCceEEEE
Q 018853 254 NNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCR--RGYIHVVNNDFTSWEMYAIG--GSANPTINSQ 329 (349)
Q Consensus 254 nn~f~~h~k~~L~G~sd~~~~d~g~~VTi~hN~F~~n~~~R~Pr~R--~G~~HvvNN~~~~~~~yaig--g~~~~~i~~e 329 (349)
+|.|.+......+-.+ -.+++.+|.|.+ +..-.=.+. ...+.+.||.+++-..+++. ....+++.++
T Consensus 60 ~~~~~~~~~~i~~~~~--------~~~~i~~~~i~~-~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i~ 130 (158)
T PF13229_consen 60 NNTISDNGSGIYVSGS--------SNITIENNRIEN-NGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGGSSPNVTIE 130 (158)
T ss_dssp S-EEES-SEEEECCS---------CS-EEES-EEEC-SSS-SCE-TCEECS-EEES-EEECCTTSSCEEEECC--S-EEE
T ss_pred CeEEEEccceEEEEec--------CCceecCcEEEc-CCCccEEEeccCCCEEEEeEEEEeCcceeEEEECCCCCeEEEE
Confidence 8888876632222111 256777777753 222111121 23567777777765533332 2224467777
Q ss_pred cceEeCCC
Q 018853 330 GNRYTAPP 337 (349)
Q Consensus 330 gN~F~~~~ 337 (349)
+|.|....
T Consensus 131 ~n~i~~~~ 138 (158)
T PF13229_consen 131 NNTISNNG 138 (158)
T ss_dssp CEEEECES
T ss_pred EEEEEeCc
Confidence 77777644
No 13
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.99 E-value=0.00038 Score=71.45 Aligned_cols=116 Identities=14% Similarity=0.164 Sum_probs=75.2
Q ss_pred hhHHHHhhcCC--CeEEEEecCeEEEecceEEecCCceEEeeCceE--EEEecc-EEEEeeeccEEEEeeEEEeeccCCC
Q 018853 123 GTLRHAVIQTE--PIWITFASNMLIKLKHELIINSYKTIDGRGANV--EITGNG-CLTLQYVSHVIIHNVHIHHCKPSGN 197 (349)
Q Consensus 123 GtLr~av~~~~--P~~IvF~~~g~I~L~~~L~i~snkTI~G~ga~i--~I~G~g-~l~i~~a~NVIIrnL~I~~~~p~~~ 197 (349)
-.|+.|+.+-. .-.|++... +- +..+|.+.+++||.|+...+ .|.|.+ .+.-..++||-|++++|++.
T Consensus 55 ~ALQaAIdaAa~gG~tV~Lp~G-~Y-~~G~L~L~spltL~G~~gAt~~vIdG~~~lIiai~A~nVTIsGLtIdGs----- 127 (455)
T TIGR03808 55 RALQRAIDEAARAQTPLALPPG-VY-RTGPLRLPSGAQLIGVRGATRLVFTGGPSLLSSEGADGIGLSGLTLDGG----- 127 (455)
T ss_pred HHHHHHHHHhhcCCCEEEECCC-ce-ecccEEECCCcEEEecCCcEEEEEcCCceEEEEecCCCeEEEeeEEEeC-----
Confidence 35888876522 234666543 22 34678899999999995543 365544 33233799999999999863
Q ss_pred ccccCCCCccccCCCCCCCcEEeeCCceEEEEeeEEecCC-CCeeeeeeCCceEEEEcceec
Q 018853 198 TMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCT-DGLIDAIMGSTGITISNNYFS 258 (349)
Q Consensus 198 ~~v~~~~~~~G~r~~~dgDaIsi~gs~nVWIDHcS~s~~~-Dglid~~~gs~~ITISnn~f~ 258 (349)
|.......-+|.+.+++++-|.+|.+.... .|.. .+++. ..|++|.+.
T Consensus 128 ----------G~dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~--L~~~~-~~I~~N~I~ 176 (455)
T TIGR03808 128 ----------GIPLPQRRGLIHCQGGRDVRITDCEITGSGGNGIW--LETVS-GDISGNTIT 176 (455)
T ss_pred ----------CCcccCCCCEEEEccCCceEEEeeEEEcCCcceEE--EEcCc-ceEecceEe
Confidence 111123445889999999999999999984 7765 34455 333333333
No 14
>PLN03010 polygalacturonase
Probab=97.91 E-value=0.001 Score=67.91 Aligned_cols=113 Identities=19% Similarity=0.177 Sum_probs=71.0
Q ss_pred CCCCcEEeeCCceEEEEeeEEecCCCCeeeeeeCCceEEEEcceeccCCceeeccCCCCccCCCC-ceEEEEeeEecCCC
Q 018853 213 SDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMG-MQVTIAFNHFGVAL 291 (349)
Q Consensus 213 ~dgDaIsi~gs~nVWIDHcS~s~~~Dglid~~~gs~~ITISnn~f~~h~k~~L~G~sd~~~~d~g-~~VTi~hN~F~~n~ 291 (349)
...|||.+..+++|+|.+|.+..+ |..+.++.++++++|.++.... ..+.-+|+.-+...... .+|++.++.|.+ .
T Consensus 205 ~NTDGiDi~~s~nV~I~n~~I~~g-DDcIaiksgs~ni~I~~~~C~~-gHGisIGS~g~~~~~~~V~nV~v~n~~i~~-t 281 (409)
T PLN03010 205 PNTDGIDISYSTNINIFDSTIQTG-DDCIAINSGSSNINITQINCGP-GHGISVGSLGADGANAKVSDVHVTHCTFNQ-T 281 (409)
T ss_pred CCCCceeeeccceEEEEeeEEecC-CCeEEecCCCCcEEEEEEEeEC-cCCEEEccCCCCCCCCeeEEEEEEeeEEeC-C
Confidence 357999999999999999999887 4455678888888888776652 23456776543322122 579999999953 2
Q ss_pred cCcCcccC---CCeEEEEcceEeCCcceEEecCCCceEEEEcceE
Q 018853 292 VQRMPRCR---RGYIHVVNNDFTSWEMYAIGGSANPTINSQGNRY 333 (349)
Q Consensus 292 ~~R~Pr~R---~G~~HvvNN~~~~~~~yaigg~~~~~i~~egN~F 333 (349)
.+.=|++ .|.-.+-|=.|.|..|... ..| |.+.-+|.
T Consensus 282 -~~GirIKt~~G~~G~v~nItf~nI~m~~v---~~p-I~I~q~Y~ 321 (409)
T PLN03010 282 -TNGARIKTWQGGQGYARNISFENITLINT---KNP-IIIDQQYI 321 (409)
T ss_pred -CcceEEEEecCCCEEEEEeEEEeEEEecC---Ccc-EEEEeecc
Confidence 3333432 2334455555556554332 233 44444444
No 15
>PLN02218 polygalacturonase ADPG
Probab=97.72 E-value=0.0016 Score=66.86 Aligned_cols=136 Identities=16% Similarity=0.177 Sum_probs=88.5
Q ss_pred EEEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEeeCCceEEEEeeEEec-----CCCCeeeeeeCC
Q 018853 173 CLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSY-----CTDGLIDAIMGS 247 (349)
Q Consensus 173 ~l~i~~a~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~gs~nVWIDHcS~s~-----~~Dglid~~~gs 247 (349)
.|++.+++|+.|++|++++. | .=.+.+.+++||.|++.++.. -.||. | ...+
T Consensus 194 ~i~f~~~~nv~I~gitl~nS-----------p----------~w~i~~~~~~nV~i~~v~I~a~~~spNTDGI-d-i~ss 250 (431)
T PLN02218 194 ALTFYNSKSLIVKNLRVRNA-----------Q----------QIQISIEKCSNVQVSNVVVTAPADSPNTDGI-H-ITNT 250 (431)
T ss_pred EEEEEccccEEEeCeEEEcC-----------C----------CEEEEEEceeeEEEEEEEEeCCCCCCCCCcE-e-eccc
Confidence 47788999999999999974 1 126888899999999999876 45776 4 4578
Q ss_pred ceEEEEcceeccCCceeeccCCCCccCCCCceEEEEeeEecCCCc------CcCccc-CCCeEEEEcceEeCCcceEE--
Q 018853 248 TGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALV------QRMPRC-RRGYIHVVNNDFTSWEMYAI-- 318 (349)
Q Consensus 248 ~~ITISnn~f~~h~k~~L~G~sd~~~~d~g~~VTi~hN~F~~n~~------~R~Pr~-R~G~~HvvNN~~~~~~~yai-- 318 (349)
++|+|++|.|..-+.+.-+.+.. .+|++.++.++.+.. .+.+.- ..-.++|-|+.+++.. +++
T Consensus 251 ~nV~I~n~~I~tGDDcIaIksgs-------~nI~I~n~~c~~GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~-nGvRI 322 (431)
T PLN02218 251 QNIRVSNSIIGTGDDCISIESGS-------QNVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTD-NGVRI 322 (431)
T ss_pred ceEEEEccEEecCCceEEecCCC-------ceEEEEeEEEECCCCEEECcCCCCCCCceEEEEEEEccEEecCC-cceEE
Confidence 99999999999988877665431 368888888753211 010100 0115677777776542 222
Q ss_pred -----ecCCCceEEEEcceEeCCCCC
Q 018853 319 -----GGSANPTINSQGNRYTAPPDD 339 (349)
Q Consensus 319 -----gg~~~~~i~~egN~F~~~~~~ 339 (349)
+++.-..|.+++...+....|
T Consensus 323 KT~~Gg~G~v~nI~f~ni~m~~V~~p 348 (431)
T PLN02218 323 KTYQGGSGTASNIIFQNIQMENVKNP 348 (431)
T ss_pred eecCCCCeEEEEEEEEeEEEEccccc
Confidence 122223455666655554443
No 16
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.59 E-value=0.00044 Score=68.12 Aligned_cols=104 Identities=20% Similarity=0.233 Sum_probs=72.4
Q ss_pred EEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEeeCCceEEEEeeEEecCCCCeeeeeeCCceEEEE
Q 018853 174 LTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITIS 253 (349)
Q Consensus 174 l~i~~a~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~gs~nVWIDHcS~s~~~Dglid~~~gs~~ITIS 253 (349)
+.+..++||.|++|+|+... .....|||.+.+++||.|++|.+....| .+.++.++.+|+|+
T Consensus 118 ~~~~~~~nv~i~~i~I~~~~-----------------~~~NtDGid~~~s~nv~I~n~~i~~gDD-~Iaiks~~~ni~v~ 179 (326)
T PF00295_consen 118 IHINDCDNVTISNITINNPA-----------------NSPNTDGIDIDSSKNVTIENCFIDNGDD-CIAIKSGSGNILVE 179 (326)
T ss_dssp EEEESEEEEEEESEEEEEGG-----------------GCTS--SEEEESEEEEEEESEEEESSSE-SEEESSEECEEEEE
T ss_pred EEEEccCCeEEcceEEEecC-----------------CCCCcceEEEEeeeEEEEEEeecccccC-cccccccccceEEE
Confidence 55667999999999998632 1135799999999999999999988755 45567777799999
Q ss_pred cceeccCCceeeccCCCCccCCCC-ceEEEEeeEecCCCcCcCccc
Q 018853 254 NNYFSHHNEVMLLGHNDKYALDMG-MQVTIAFNHFGVALVQRMPRC 298 (349)
Q Consensus 254 nn~f~~h~k~~L~G~sd~~~~d~g-~~VTi~hN~F~~n~~~R~Pr~ 298 (349)
||.|.. ..++-+|+.-....... .+|++.++.|. + ..|.-|+
T Consensus 180 n~~~~~-ghGisiGS~~~~~~~~~i~nV~~~n~~i~-~-t~~gi~i 222 (326)
T PF00295_consen 180 NCTCSG-GHGISIGSEGSGGSQNDIRNVTFENCTII-N-TDNGIRI 222 (326)
T ss_dssp SEEEES-SSEEEEEEESSSSE--EEEEEEEEEEEEE-S-ESEEEEE
T ss_pred eEEEec-cccceeeeccCCccccEEEeEEEEEEEee-c-cceEEEE
Confidence 999974 34466775432211112 47999999995 3 3355444
No 17
>PLN02480 Probable pectinesterase
Probab=97.45 E-value=0.0036 Score=62.54 Aligned_cols=169 Identities=15% Similarity=0.225 Sum_probs=102.8
Q ss_pred hHHHHhhc----CCCeEEEEecCeEEEecceEEe---cCCceEEeeCce-EEEEe---------ccEEEEeeeccEEEEe
Q 018853 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGAN-VEITG---------NGCLTLQYVSHVIIHN 186 (349)
Q Consensus 124 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~-i~I~G---------~g~l~i~~a~NVIIrn 186 (349)
|+.+||.+ +..++++|=..|+-+ +.|.| ++|+||.|.+.. ..|.+ .+.+++ .+++++++|
T Consensus 62 TIQ~AIdaap~~~~~~~~I~Ik~GvY~--E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTvtV-~a~~f~a~n 138 (343)
T PLN02480 62 SVQSAIDAVPVGNSEWIIVHLRKGVYR--EKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFTV-EAPHFVAFG 138 (343)
T ss_pred cHHHHHhhCccCCCceEEEEEcCcEEE--EEEEECCCCceEEEEecCCCCeEEEccccccCCCCceEEEE-ECCCEEEEe
Confidence 89999854 234666666667654 66777 578999999853 44543 235666 589999999
Q ss_pred eEEEeeccCCCccccCCCCccccCCCCCCCcEEee-CCceEEEEeeEEecCCC-----------------CeeeeeeCCc
Q 018853 187 VHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTD-----------------GLIDAIMGST 248 (349)
Q Consensus 187 L~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~-gs~nVWIDHcS~s~~~D-----------------glid~~~gs~ 248 (349)
|+|++..+.+. ....++-|+-+. .++++.+.+|.|....| |.+|.+.|.-
T Consensus 139 LTf~Nta~~g~------------~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~gR~yf~~C~IeG~VDFIFG~g 206 (343)
T PLN02480 139 ISIRNDAPTGM------------AFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYKGRHYYHSCYIQGSIDFIFGRG 206 (343)
T ss_pred eEEEecCCCCC------------CCCCCCceEEEEecCCcEEEEeeEEecccceeEeCCCCEEEEeCEEEeeeeEEccce
Confidence 99998743211 011234566664 68999999999987666 4466666666
Q ss_pred eEEEEcceeccCC------ceeeccCCCCccCCCCceEEEEeeEecCCC----cCcCcccCCCeEEEEcceEe
Q 018853 249 GITISNNYFSHHN------EVMLLGHNDKYALDMGMQVTIAFNHFGVAL----VQRMPRCRRGYIHVVNNDFT 311 (349)
Q Consensus 249 ~ITISnn~f~~h~------k~~L~G~sd~~~~d~g~~VTi~hN~F~~n~----~~R~Pr~R~G~~HvvNN~~~ 311 (349)
..-+++|.|..-. .+.+--++-.. +...-..|.+|.+. +. -.|-.+ .+..+=+.|.++.
T Consensus 207 ~a~fe~C~i~s~~~~~~~~~G~ITA~~r~~--~~~~GfvF~~C~i~-g~g~~yLGRPW~-~ya~vVf~~t~l~ 275 (343)
T PLN02480 207 RSIFHNCEIFVIADRRVKIYGSITAHNRES--EDNSGFVFIKGKVY-GIGEVYLGRAKG-AYSRVIFAKTYLS 275 (343)
T ss_pred eEEEEccEEEEecCCCCCCceEEEcCCCCC--CCCCEEEEECCEEc-ccCceeeecCCC-CcceEEEEecccC
Confidence 7777788776421 11222111111 11133566666663 21 123322 2567777787774
No 18
>PLN03010 polygalacturonase
Probab=97.39 E-value=0.0095 Score=60.91 Aligned_cols=140 Identities=16% Similarity=0.189 Sum_probs=91.4
Q ss_pred EEEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEeeCCceEEEEeeEEec-----CCCCeeeeeeCC
Q 018853 173 CLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSY-----CTDGLIDAIMGS 247 (349)
Q Consensus 173 ~l~i~~a~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~gs~nVWIDHcS~s~-----~~Dglid~~~gs 247 (349)
.|++.+++||.|++|++++. | .=.+.+.++++|.|++..+.. -.||. | ...+
T Consensus 159 ~l~~~~~~nv~v~gitl~ns-----------p----------~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGi-D-i~~s 215 (409)
T PLN03010 159 ALHISKCDNLTINGITSIDS-----------P----------KNHISIKTCNYVAISKINILAPETSPNTDGI-D-ISYS 215 (409)
T ss_pred eEEEEeecCeEEeeeEEEcC-----------C----------ceEEEEeccccEEEEEEEEeCCCCCCCCCce-e-eecc
Confidence 47788999999999999974 1 125788899999999999875 46776 4 4579
Q ss_pred ceEEEEcceeccCCceeeccCCCCccCCCCceEEEEeeEecCCC----cCcCcc-cCCCeEEEEcceEeCCc-ceEE---
Q 018853 248 TGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVAL----VQRMPR-CRRGYIHVVNNDFTSWE-MYAI--- 318 (349)
Q Consensus 248 ~~ITISnn~f~~h~k~~L~G~sd~~~~d~g~~VTi~hN~F~~n~----~~R~Pr-~R~G~~HvvNN~~~~~~-~yai--- 318 (349)
++|+|++|.+..-+.+.-+.+.. ....|+..++..+++. ...... .-.-.+++.|+.+++-. .-.|
T Consensus 216 ~nV~I~n~~I~~gDDcIaiksgs-----~ni~I~~~~C~~gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~ 290 (409)
T PLN03010 216 TNINIFDSTIQTGDDCIAINSGS-----SNINITQINCGPGHGISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTW 290 (409)
T ss_pred ceEEEEeeEEecCCCeEEecCCC-----CcEEEEEEEeECcCCEEEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEe
Confidence 99999999999998887776531 1245555555544321 101000 00125778888887642 1111
Q ss_pred -e-cCCCceEEEEcceEeCCCCCC
Q 018853 319 -G-GSANPTINSQGNRYTAPPDDN 340 (349)
Q Consensus 319 -g-g~~~~~i~~egN~F~~~~~~~ 340 (349)
| ++.-..|.+++-.++....|.
T Consensus 291 ~G~~G~v~nItf~nI~m~~v~~pI 314 (409)
T PLN03010 291 QGGQGYARNISFENITLINTKNPI 314 (409)
T ss_pred cCCCEEEEEeEEEeEEEecCCccE
Confidence 1 122336777888888776653
No 19
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.35 E-value=0.0091 Score=55.33 Aligned_cols=87 Identities=24% Similarity=0.225 Sum_probs=59.8
Q ss_pred CcEEeeCCceEEEEeeEEecCCCCeeeeeeCCceEEEEcceeccCCceeeccCCCCccCCCCceEEEEeeEecCCCcCcC
Q 018853 216 DGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRM 295 (349)
Q Consensus 216 DaIsi~gs~nVWIDHcS~s~~~Dglid~~~gs~~ITISnn~f~~h~k~~L~G~sd~~~~d~g~~VTi~hN~F~~n~~~R~ 295 (349)
.||.+..+.+..|..+.|+....|.. ..++...+|++|.|.+...++.+-.+ .+.++.+|.|..+ ....
T Consensus 80 ~Gi~l~~s~~~~I~~N~i~~n~~GI~--l~~s~~~~I~~N~i~~~~~GI~l~~s--------~~n~I~~N~i~~n-~~~G 148 (236)
T PF05048_consen 80 YGIYLMGSSNNTISNNTISNNGYGIY--LYGSSNNTISNNTISNNGYGIYLSSS--------SNNTITGNTISNN-TDYG 148 (236)
T ss_pred CCEEEEcCCCcEEECCEecCCCceEE--EeeCCceEEECcEEeCCCEEEEEEeC--------CCCEEECeEEeCC-Cccc
Confidence 78888888877899999988888664 45677888999988866666555433 2678888998643 1222
Q ss_pred cc-cC-CCeEEEEcceEeCC
Q 018853 296 PR-CR-RGYIHVVNNDFTSW 313 (349)
Q Consensus 296 Pr-~R-~G~~HvvNN~~~~~ 313 (349)
-. +. .....+++|.|.+-
T Consensus 149 i~~~~~s~~n~I~~N~f~N~ 168 (236)
T PF05048_consen 149 IYFLSGSSGNTIYNNNFNNS 168 (236)
T ss_pred eEEeccCCCCEEECCCccCE
Confidence 22 11 23678889998443
No 20
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.32 E-value=0.015 Score=52.29 Aligned_cols=103 Identities=18% Similarity=0.202 Sum_probs=64.0
Q ss_pred hHHHHh--hc-CCCeEEEEecCeEEEecceEEecCCceEEeeCc-eEEEEe--cc--------EEEEee-ecc--EEEEe
Q 018853 124 TLRHAV--IQ-TEPIWITFASNMLIKLKHELIINSYKTIDGRGA-NVEITG--NG--------CLTLQY-VSH--VIIHN 186 (349)
Q Consensus 124 tLr~av--~~-~~P~~IvF~~~g~I~L~~~L~i~snkTI~G~ga-~i~I~G--~g--------~l~i~~-a~N--VIIrn 186 (349)
-|+.|+ .+ .+..+|.| ..|+..++++|.+.|++||.|.|. ...+.. .. ...+.. ..+ +-|+|
T Consensus 20 Aiq~Ai~~~~~~~g~~v~~-P~G~Y~i~~~l~~~s~v~l~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~n 98 (225)
T PF12708_consen 20 AIQAAIDAAAAAGGGVVYF-PPGTYRISGTLIIPSNVTLRGAGGNSTILFLSGSGDSFSVVPGIGVFDSGNSNIGIQIRN 98 (225)
T ss_dssp HHHHHHHHHCSTTSEEEEE--SEEEEESS-EEE-TTEEEEESSTTTEEEEECTTTSTSCCEEEEEECCSCSCCEEEEEEE
T ss_pred HHHHhhhhcccCCCeEEEE-cCcEEEEeCCeEcCCCeEEEccCCCeeEEEecCcccccccccceeeeecCCCCceEEEEe
Confidence 488888 33 45566666 568999999999999999999877 344441 11 011211 122 44999
Q ss_pred eEEEeeccCCCccccCCCCccccCCCCCCCcEEeeCCceEEEEeeEEecCCCCeee
Q 018853 187 VHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLID 242 (349)
Q Consensus 187 L~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~gs~nVWIDHcS~s~~~Dglid 242 (349)
|.|....-. . ....++|.+..+++++|++|++..+....+.
T Consensus 99 l~i~~~~~~-------------~--~~~~~~i~~~~~~~~~i~nv~~~~~~~~~i~ 139 (225)
T PF12708_consen 99 LTIDGNGID-------------P--NNNNNGIRFNSSQNVSISNVRIENSGGDGIY 139 (225)
T ss_dssp EEEEETCGC-------------E---SCEEEEEETTEEEEEEEEEEEES-SS-SEE
T ss_pred eEEEccccc-------------C--CCCceEEEEEeCCeEEEEeEEEEccCccEEE
Confidence 999753210 0 1125788888899999999999987544443
No 21
>PLN02197 pectinesterase
Probab=97.31 E-value=0.0043 Score=66.01 Aligned_cols=152 Identities=22% Similarity=0.349 Sum_probs=99.6
Q ss_pred Ccccc--ccccccccCCcCccCCCCCCCCCce---EEEcCCCCCCCCCCCCh---hHHHHhhc----CCCeEEEEecCeE
Q 018853 77 DPNWA--ANRQRLADCSVGFAQGTLGGKGGQI---YVVTDSSDSDPANPTPG---TLRHAVIQ----TEPIWITFASNML 144 (349)
Q Consensus 77 ~~~w~--~~~~~la~~a~GfG~~ttGG~gG~v---~~VT~~~d~~~~~p~pG---tLr~av~~----~~P~~IvF~~~g~ 144 (349)
.|.|- .+|+-|+ +.+.|.++-||.++.+ ++|. .+ |.| |+.+||.+ ...|+|||=..|+
T Consensus 244 ~p~w~~~~~r~ll~--~~~~~~~~~~~~~~~~~~~~vVa---~d-----GsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~Gv 313 (588)
T PLN02197 244 IPTWVSGADRKLMA--KAGRGANAGGGGGGKIKATHVVA---KD-----GSGQFKTISQAVMACPDKNPGRCIIHIKAGI 313 (588)
T ss_pred CCCCCCccchhhhc--cCcccccccccccccccccEEEc---CC-----CCCCcCCHHHHHHhccccCCceEEEEEeCce
Confidence 47885 3566664 4666777877776643 3332 22 555 88889864 2346777766776
Q ss_pred EEecceEEe---cCCceEEeeCce-EEEEe--------------ccEEEEeeeccEEEEeeEEEeeccCCCccccCCCCc
Q 018853 145 IKLKHELII---NSYKTIDGRGAN-VEITG--------------NGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTH 206 (349)
Q Consensus 145 I~L~~~L~i---~snkTI~G~ga~-i~I~G--------------~g~l~i~~a~NVIIrnL~I~~~~p~~~~~v~~~~~~ 206 (349)
-+ +.+.| .+|+|+.|.|.. ..|++ .+.+.+ .+++++.+||.|++...
T Consensus 314 Y~--E~V~I~~~k~ni~l~G~g~~~TiIt~~~~~~~~~g~~T~~SaT~~v-~~~~F~a~nitf~Ntag------------ 378 (588)
T PLN02197 314 YN--EQVTIPKKKNNIFMFGDGARKTVISYNRSVKLSPGTTTSLSGTVQV-ESEGFMAKWIGFKNTAG------------ 378 (588)
T ss_pred EE--EEEEccCCCceEEEEEcCCCCeEEEeccccccCCCCcccceeEEEE-ECCcEEEEEeEEEeCCC------------
Confidence 54 55666 369999999875 33432 113344 58999999999998531
Q ss_pred cccCCCCCCCcEEee-CCceEEEEeeEEecCCC-----------------CeeeeeeCCceEEEEcceec
Q 018853 207 VGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTD-----------------GLIDAIMGSTGITISNNYFS 258 (349)
Q Consensus 207 ~G~r~~~dgDaIsi~-gs~nVWIDHcS~s~~~D-----------------glid~~~gs~~ITISnn~f~ 258 (349)
. .+.-|+-+. .+++.-+.+|+|....| |.+|.+-|.-..-+++|.|.
T Consensus 379 --~---~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq~C~i~ 443 (588)
T PLN02197 379 --P---MGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFIFGKSATVIQNSLIV 443 (588)
T ss_pred --C---CCCceEEEEecCCcEEEEEeEEEecCcceEecCCCEEEEeeEEEecccccccceeeeeecCEEE
Confidence 1 122355544 57889999999987655 55566666667788888875
No 22
>PLN03003 Probable polygalacturonase At3g15720
Probab=97.29 E-value=0.009 Score=61.86 Aligned_cols=144 Identities=15% Similarity=0.228 Sum_probs=95.3
Q ss_pred CeEEEEecCeEEEecceEEecCCceEEeeCceEEE---EeccEEEEeeeccEEEEeeEEEeeccCCCccccCCCCccccC
Q 018853 134 PIWITFASNMLIKLKHELIINSYKTIDGRGANVEI---TGNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYR 210 (349)
Q Consensus 134 P~~IvF~~~g~I~L~~~L~i~snkTI~G~ga~i~I---~G~g~l~i~~a~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r 210 (349)
..||.|..- +.|.|.-.=||+|||+.--- ...-.|++.+++|+.|++|++++..
T Consensus 104 ~~wI~f~~~------~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp----------------- 160 (456)
T PLN03003 104 DQWILFTDI------EGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSP----------------- 160 (456)
T ss_pred cceEEEEcc------cceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCC-----------------
Confidence 358888642 23555444589999863110 0111478889999999999999741
Q ss_pred CCCCCCcEEeeCCceEEEEeeEEec-----CCCCeeeeeeCCceEEEEcceeccCCceeeccCCCCccCCCCceEEEEee
Q 018853 211 GKSDGDGISIFGSQKIWVDHCSLSY-----CTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFN 285 (349)
Q Consensus 211 ~~~dgDaIsi~gs~nVWIDHcS~s~-----~~Dglid~~~gs~~ITISnn~f~~h~k~~L~G~sd~~~~d~g~~VTi~hN 285 (349)
.=.+.+.++++|.|++.++.. -.||. | ...|++|+|.+|.|..-+.+.-+++.- .+|++.++
T Consensus 161 ----~w~i~i~~c~nV~i~~l~I~ap~~spNTDGI-D-i~~S~nV~I~n~~I~tGDDCIaiksgs-------~NI~I~n~ 227 (456)
T PLN03003 161 ----MAHIHISECNYVTISSLRINAPESSPNTDGI-D-VGASSNVVIQDCIIATGDDCIAINSGT-------SNIHISGI 227 (456)
T ss_pred ----cEEEEEeccccEEEEEEEEeCCCCCCCCCcE-e-ecCcceEEEEecEEecCCCeEEeCCCC-------ccEEEEee
Confidence 125788899999999999986 36776 4 457999999999999988877776431 25777777
Q ss_pred EecCCC------cCcCcc-cCCCeEEEEcceEeCC
Q 018853 286 HFGVAL------VQRMPR-CRRGYIHVVNNDFTSW 313 (349)
Q Consensus 286 ~F~~n~------~~R~Pr-~R~G~~HvvNN~~~~~ 313 (349)
.++.+. ..+... -..-.+++.|+.+++-
T Consensus 228 ~c~~GHGISIGSlg~~g~~~~V~NV~v~n~~~~~T 262 (456)
T PLN03003 228 DCGPGHGISIGSLGKDGETATVENVCVQNCNFRGT 262 (456)
T ss_pred EEECCCCeEEeeccCCCCcceEEEEEEEeeEEECC
Confidence 664221 111100 0012577888888763
No 23
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.28 E-value=0.003 Score=53.15 Aligned_cols=128 Identities=20% Similarity=0.242 Sum_probs=71.8
Q ss_pred EEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEeeCCceEEEEeeEEecCCCCeeeeeeCCceEEEE
Q 018853 174 LTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITIS 253 (349)
Q Consensus 174 l~i~~a~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~gs~nVWIDHcS~s~~~Dglid~~~gs~~ITIS 253 (349)
|.+...+++.|++-.|++ .+.+|.+.+..++.|+.|.++.+..++. ...+..++|+
T Consensus 26 i~~~~~~~~~i~n~~i~~----------------------~~~gi~~~~~~~~~i~~~~~~~~~~~i~--~~~~~~~~i~ 81 (158)
T PF13229_consen 26 IHVSGSSNITIENCTISN----------------------GGYGIYVSGGSNVTISNNTISDNGSGIY--VSGSSNITIE 81 (158)
T ss_dssp EEE-SSCESEEES-EEES----------------------STTSEEEECCES-EEES-EEES-SEEEE--CCS-CS-EEE
T ss_pred EEEEcCCCeEEECeEEEC----------------------CCcEEEEecCCCeEEECeEEEEccceEE--EEecCCceec
Confidence 556556667777777773 2467888888999999999998883333 3478899999
Q ss_pred cceeccCCc-eeeccCCCCccCCCCceEEEEeeEecCCCcCcCcccC-CC--eEEEEcceEeCCcceEEecCCCce-EEE
Q 018853 254 NNYFSHHNE-VMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCR-RG--YIHVVNNDFTSWEMYAIGGSANPT-INS 328 (349)
Q Consensus 254 nn~f~~h~k-~~L~G~sd~~~~d~g~~VTi~hN~F~~n~~~R~Pr~R-~G--~~HvvNN~~~~~~~yaigg~~~~~-i~~ 328 (349)
+|.|.+... ++.+.. ....+++.+|.|..+ .+..=.+. .. .+-+.+|.+++...+++....... +.+
T Consensus 82 ~~~i~~~~~~gi~~~~-------~~~~~~i~~n~~~~~-~~~gi~~~~~~~~~~~i~~n~i~~~~~~gi~~~~~~~~~~v 153 (158)
T PF13229_consen 82 NNRIENNGDYGIYISN-------SSSNVTIENNTIHNN-GGSGIYLEGGSSPNVTIENNTISNNGGNGIYLISGSSNCTV 153 (158)
T ss_dssp S-EEECSSS-SCE-TC-------EECS-EEES-EEECC-TTSSCEEEECC--S-EEECEEEECESSEEEE-TT-SS--EE
T ss_pred CcEEEcCCCccEEEec-------cCCCEEEEeEEEEeC-cceeEEEECCCCCeEEEEEEEEEeCcceeEEEECCCCeEEE
Confidence 999987654 333322 123688888888642 21111111 12 566688888887778875443444 778
Q ss_pred EcceE
Q 018853 329 QGNRY 333 (349)
Q Consensus 329 egN~F 333 (349)
.+|.|
T Consensus 154 ~~n~~ 158 (158)
T PF13229_consen 154 TNNTF 158 (158)
T ss_dssp ES-E-
T ss_pred ECCCC
Confidence 88876
No 24
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.25 E-value=0.0052 Score=56.92 Aligned_cols=129 Identities=21% Similarity=0.182 Sum_probs=93.0
Q ss_pred EEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEeeCCceEEEEeeEEecCCCCeeeeeeCCceEEEE
Q 018853 174 LTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITIS 253 (349)
Q Consensus 174 l~i~~a~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~gs~nVWIDHcS~s~~~Dglid~~~gs~~ITIS 253 (349)
+.+..+.++.|++.+|++. ..||.+.+++++-|..|.++.+.+|.. ...+.+.+|+
T Consensus 38 i~~~~s~~~~I~~n~i~~~----------------------~~GI~~~~s~~~~i~~n~i~~n~~Gi~--l~~s~~~~I~ 93 (236)
T PF05048_consen 38 IYVENSDNNTISNNTISNN----------------------RYGIHLMGSSNNTIENNTISNNGYGIY--LMGSSNNTIS 93 (236)
T ss_pred EEEEEcCCeEEEeeEEECC----------------------CeEEEEEccCCCEEEeEEEEccCCCEE--EEcCCCcEEE
Confidence 5566889999999988752 468999999999999999999998876 4556656999
Q ss_pred cceeccCCceeeccCCCCccCCCCceEEEEeeEecCCCcCcCcccC-CCeEEEEcceEeCCcceEEe-cCCCceEEEEcc
Q 018853 254 NNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCR-RGYIHVVNNDFTSWEMYAIG-GSANPTINSQGN 331 (349)
Q Consensus 254 nn~f~~h~k~~L~G~sd~~~~d~g~~VTi~hN~F~~n~~~R~Pr~R-~G~~HvvNN~~~~~~~yaig-g~~~~~i~~egN 331 (349)
+|.|.+...+.++..+. ..++..|.|. +.. ..-.+. .....+.+|.+.+-..|++. ......-.+.+|
T Consensus 94 ~N~i~~n~~GI~l~~s~--------~~~I~~N~i~-~~~-~GI~l~~s~~n~I~~N~i~~n~~~Gi~~~~~s~~n~I~~N 163 (236)
T PF05048_consen 94 NNTISNNGYGIYLYGSS--------NNTISNNTIS-NNG-YGIYLSSSSNNTITGNTISNNTDYGIYFLSGSSGNTIYNN 163 (236)
T ss_pred CCEecCCCceEEEeeCC--------ceEEECcEEe-CCC-EEEEEEeCCCCEEECeEEeCCCccceEEeccCCCCEEECC
Confidence 99999876655554332 4778888885 322 222222 24778889999888667776 444445677899
Q ss_pred eEeCC
Q 018853 332 RYTAP 336 (349)
Q Consensus 332 ~F~~~ 336 (349)
+|.+.
T Consensus 164 ~f~N~ 168 (236)
T PF05048_consen 164 NFNNS 168 (236)
T ss_pred CccCE
Confidence 99433
No 25
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.20 E-value=0.031 Score=56.62 Aligned_cols=175 Identities=15% Similarity=0.170 Sum_probs=124.0
Q ss_pred HHHHhhcCCCeEEEEecCeEEEecceEEecCCceEEeeCceEEEEecc--EEEE---------eeeccEEEEeeEEEeec
Q 018853 125 LRHAVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNG--CLTL---------QYVSHVIIHNVHIHHCK 193 (349)
Q Consensus 125 Lr~av~~~~P~~IvF~~~g~I~L~~~L~i~snkTI~G~ga~i~I~G~g--~l~i---------~~a~NVIIrnL~I~~~~ 193 (349)
|-+|+.+- --|..+.+-+-.++++|.|.+..+|+|+||-|.|.+.+ .+.+ .+-.+|.+.|++|..-
T Consensus 57 le~~I~~h--aKVaL~Pg~~Y~i~~~V~I~~~cYIiGnGA~V~v~~~~~~~f~v~~~~~~P~V~gM~~VtF~ni~F~~~- 133 (386)
T PF01696_consen 57 LEEAIRQH--AKVALRPGAVYVIRKPVNIRSCCYIIGNGATVRVNGPDRVAFRVCMQSMGPGVVGMEGVTFVNIRFEGR- 133 (386)
T ss_pred HHHHHHhc--CEEEeCCCCEEEEeeeEEecceEEEECCCEEEEEeCCCCceEEEEcCCCCCeEeeeeeeEEEEEEEecC-
Confidence 56666554 34566677777888999999999999999998886532 1332 3567899999999731
Q ss_pred cCCCccccCCCCccccCCCCCCCcEEeeCCceEEEEeeEEecCCCCeeeeeeCCceEEEEcceeccCCceeeccCCCCcc
Q 018853 194 PSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYA 273 (349)
Q Consensus 194 p~~~~~v~~~~~~~G~r~~~dgDaIsi~gs~nVWIDHcS~s~~~Dglid~~~gs~~ITISnn~f~~h~k~~L~G~sd~~~ 273 (349)
..--|+-+...+++.|.-|+|....--.++.. ....|..|+|..-+++......
T Consensus 134 -------------------~~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~---~~~~VrGC~F~~C~~gi~~~~~---- 187 (386)
T PF01696_consen 134 -------------------DTFSGVVFHANTNTLFHGCSFFGFHGTCLESW---AGGEVRGCTFYGCWKGIVSRGK---- 187 (386)
T ss_pred -------------------CccceeEEEecceEEEEeeEEecCcceeEEEc---CCcEEeeeEEEEEEEEeecCCc----
Confidence 12357778889999999999999776666543 5778999999887776533211
Q ss_pred CCCCceEEEEeeEecCCCcCcCcccCCCeEEEEcceEeCCcceEEecCCCceEEEEcceEeCCCC
Q 018853 274 LDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTSWEMYAIGGSANPTINSQGNRYTAPPD 338 (349)
Q Consensus 274 ~d~g~~VTi~hN~F~~n~~~R~Pr~R~G~~HvvNN~~~~~~~yaigg~~~~~i~~egN~F~~~~~ 338 (349)
.++++.+|.|. .|.==. +..|.+++.+|...+-.-...-+ .+-.+.+|.|..+.+
T Consensus 188 ----~~lsVk~C~Fe-kC~igi--~s~G~~~i~hn~~~ec~Cf~l~~---g~g~i~~N~v~~~~~ 242 (386)
T PF01696_consen 188 ----SKLSVKKCVFE-KCVIGI--VSEGPARIRHNCASECGCFVLMK---GTGSIKHNMVCGPND 242 (386)
T ss_pred ----ceEEeeheeee-heEEEE--EecCCeEEecceecccceEEEEc---ccEEEeccEEeCCCC
Confidence 47888999994 232111 23688999999998876444322 245678999987765
No 26
>PLN02155 polygalacturonase
Probab=97.14 E-value=0.028 Score=57.22 Aligned_cols=142 Identities=19% Similarity=0.255 Sum_probs=94.0
Q ss_pred eEEEEecCeEEEecceEEecCCceEEeeCceEEE--E-e------ccEEEEeeeccEEEEeeEEEeeccCCCccccCCCC
Q 018853 135 IWITFASNMLIKLKHELIINSYKTIDGRGANVEI--T-G------NGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPT 205 (349)
Q Consensus 135 ~~IvF~~~g~I~L~~~L~i~snkTI~G~ga~i~I--~-G------~g~l~i~~a~NVIIrnL~I~~~~p~~~~~v~~~~~ 205 (349)
.||.|..- +.+.|.. =||+|||..--- . + ...|.+.+++||.|++|++++. |
T Consensus 107 ~wi~~~~~------~~i~i~G-G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nS-----------p- 167 (394)
T PLN02155 107 YWILFNKV------NRFSLVG-GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNS-----------Q- 167 (394)
T ss_pred eeEEEECc------CCCEEEc-cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcC-----------C-
Confidence 47777542 2344444 688999864211 0 0 1137788999999999999964 1
Q ss_pred ccccCCCCCCCcEEeeCCceEEEEeeEEecC-----CCCeeeeeeCCceEEEEcceeccCCceeeccCCCCccCCCCceE
Q 018853 206 HVGYRGKSDGDGISIFGSQKIWVDHCSLSYC-----TDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQV 280 (349)
Q Consensus 206 ~~G~r~~~dgDaIsi~gs~nVWIDHcS~s~~-----~Dglid~~~gs~~ITISnn~f~~h~k~~L~G~sd~~~~d~g~~V 280 (349)
-=.+.+.+++||.|++.++..- .||. | ...+++|+|++|.|..-+.+..+++.. -+|
T Consensus 168 ---------~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGi-d-i~~s~nV~I~~~~I~~gDDcIaik~gs-------~nI 229 (394)
T PLN02155 168 ---------VSHMTLNGCTNVVVRNVKLVAPGNSPNTDGF-H-VQFSTGVTFTGSTVQTGDDCVAIGPGT-------RNF 229 (394)
T ss_pred ---------CeEEEEECeeeEEEEEEEEECCCCCCCCCcc-c-cccceeEEEEeeEEecCCceEEcCCCC-------ceE
Confidence 1257788999999999999653 5765 4 457999999999999988887776531 267
Q ss_pred EEEeeEecCCC------cCcCc-ccCCCeEEEEcceEeCC
Q 018853 281 TIAFNHFGVAL------VQRMP-RCRRGYIHVVNNDFTSW 313 (349)
Q Consensus 281 Ti~hN~F~~n~------~~R~P-r~R~G~~HvvNN~~~~~ 313 (349)
++.++.+..+. ..+.+ .-..-.+.|.|+.+.+-
T Consensus 230 ~I~n~~c~~GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t 269 (394)
T PLN02155 230 LITKLACGPGHGVSIGSLAKELNEDGVENVTVSSSVFTGS 269 (394)
T ss_pred EEEEEEEECCceEEeccccccCCCCcEEEEEEEeeEEeCC
Confidence 88777664311 11112 11112677888888763
No 27
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.11 E-value=0.023 Score=58.61 Aligned_cols=66 Identities=15% Similarity=0.085 Sum_probs=41.4
Q ss_pred EEEEeeeccEEEEeeEEEeec------cCCCccccCCCCccccCCCCCCCcEEeeCCceEEEEeeEEecCCCCeeee
Q 018853 173 CLTLQYVSHVIIHNVHIHHCK------PSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDA 243 (349)
Q Consensus 173 ~l~i~~a~NVIIrnL~I~~~~------p~~~~~v~~~~~~~G~r~~~dgDaIsi~gs~nVWIDHcS~s~~~Dglid~ 243 (349)
.|.+++++++.|++.+|++.- ......+.+..- . .....+|.+..++++.|.++.++.+.|+.|-+
T Consensus 137 gI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~I-~----g~~~~~I~lw~S~g~~V~~N~I~g~RD~gi~i 208 (455)
T TIGR03808 137 LIHCQGGRDVRITDCEITGSGGNGIWLETVSGDISGNTI-T----QIAVTAIVSFDALGLIVARNTIIGANDNGIEI 208 (455)
T ss_pred EEEEccCCceEEEeeEEEcCCcceEEEEcCcceEecceE-e----ccccceEEEeccCCCEEECCEEEccCCCCeEE
Confidence 477789999999999999751 000011111100 0 11234488888889999999999988854443
No 28
>PLN02176 putative pectinesterase
Probab=97.02 E-value=0.022 Score=56.96 Aligned_cols=121 Identities=17% Similarity=0.240 Sum_probs=79.2
Q ss_pred hHHHHhhc----CCCeEEEEecCeEEEecceEEe---cCCceEEeeCceE-EEE--------eccEEEEeeeccEEEEee
Q 018853 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANV-EIT--------GNGCLTLQYVSHVIIHNV 187 (349)
Q Consensus 124 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~i-~I~--------G~g~l~i~~a~NVIIrnL 187 (349)
|+.+||.+ +..+++||-..|+-+ +.|.| ++|+||.|.|..- .|. +.+.+++ .+++++.+||
T Consensus 53 TIq~AIdavP~~~~~~~~I~Ik~GvY~--EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~v-~a~~F~a~nl 129 (340)
T PLN02176 53 TVQSAIDSIPLQNQNWIRILIQNGIYR--EKVTIPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFTS-YASNIIITGI 129 (340)
T ss_pred CHHHHHhhchhcCCceEEEEECCcEEE--EEEEECCCCccEEEEEcCCCceEEEEeCCcccccceEEEE-ECCCEEEEee
Confidence 78888854 234666776777765 56667 5799999998753 332 2235666 6999999999
Q ss_pred EEEeeccCCCccccCCCCccccCCCCCCCcEEee-CCceEEEEeeEEecCCC-----------------CeeeeeeCCce
Q 018853 188 HIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTD-----------------GLIDAIMGSTG 249 (349)
Q Consensus 188 ~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~-gs~nVWIDHcS~s~~~D-----------------glid~~~gs~~ 249 (349)
.|++..+..+ .+ ...++-|+-+. .++++-+.+|.|....| |.+|.+-|.-.
T Consensus 130 T~~Nt~~~~~-----~~------~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~~gRqyf~~CyIeG~VDFIFG~a~ 198 (340)
T PLN02176 130 TFKNTYNIAS-----NS------SRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDGKGRHYYKRCVISGGIDFIFGYAQ 198 (340)
T ss_pred EEEeCCCccC-----CC------CCCccceEEEEecCccEEEEccEEecccceeEeCCcCEEEEecEEEecccEEecCce
Confidence 9998653110 00 01123444444 47888899999886554 55666666666
Q ss_pred EEEEcceec
Q 018853 250 ITISNNYFS 258 (349)
Q Consensus 250 ITISnn~f~ 258 (349)
.-+++|.|.
T Consensus 199 a~Fe~C~I~ 207 (340)
T PLN02176 199 SIFEGCTLK 207 (340)
T ss_pred EEEeccEEE
Confidence 777788776
No 29
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes.; GO: 0030570 pectate lyase activity
Probab=96.95 E-value=0.00031 Score=52.64 Aligned_cols=30 Identities=30% Similarity=0.577 Sum_probs=25.4
Q ss_pred ccCCCCCCChhHHHHHHHHhhhhcc--------ccchh
Q 018853 28 LTLPHQHPDPDAVAQDVQRRVNVSL--------SRRQA 57 (349)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 57 (349)
.++.+|+|||++|+++||+.|+.++ +||+|
T Consensus 19 ~a~~aY~pdP~~Vt~~FN~~V~~~~~~~~~~nstRR~L 56 (56)
T PF04431_consen 19 AALAAYVPDPENVTNEFNRHVHRAMEDVEGTNSTRRNL 56 (56)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhhcccCccccCC
Confidence 3568999999999999999998766 57765
No 30
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=96.92 E-value=0.0062 Score=60.00 Aligned_cols=109 Identities=19% Similarity=0.316 Sum_probs=75.3
Q ss_pred EEecCCceEEeeCceE-EEEe---------ccEEEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEe
Q 018853 151 LIINSYKTIDGRGANV-EITG---------NGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISI 220 (349)
Q Consensus 151 L~i~snkTI~G~ga~i-~I~G---------~g~l~i~~a~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi 220 (349)
+.+.-.=||+|+|..- ...+ ...|.+.+++|+.|++|++++.. .| .+.+
T Consensus 62 i~i~G~G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp--------------~w-------~~~~ 120 (326)
T PF00295_consen 62 ITITGKGTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSP--------------FW-------HIHI 120 (326)
T ss_dssp EECTTSSEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-S--------------SE-------SEEE
T ss_pred EEecCCceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCCC--------------ee-------EEEE
Confidence 4454445899998720 0011 12478888999999999999641 12 5788
Q ss_pred eCCceEEEEeeEEecC-----CCCeeeeeeCCceEEEEcceeccCCceeeccCCCCccCCCCceEEEEeeEecC
Q 018853 221 FGSQKIWVDHCSLSYC-----TDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGV 289 (349)
Q Consensus 221 ~gs~nVWIDHcS~s~~-----~Dglid~~~gs~~ITISnn~f~~h~k~~L~G~sd~~~~d~g~~VTi~hN~F~~ 289 (349)
..++||+|+|.++... .||. | ...+++|+|.+|.|...+.+.-+.+.. -.|++.+++|..
T Consensus 121 ~~~~nv~i~~i~I~~~~~~~NtDGi-d-~~~s~nv~I~n~~i~~gDD~Iaiks~~-------~ni~v~n~~~~~ 185 (326)
T PF00295_consen 121 NDCDNVTISNITINNPANSPNTDGI-D-IDSSKNVTIENCFIDNGDDCIAIKSGS-------GNILVENCTCSG 185 (326)
T ss_dssp ESEEEEEEESEEEEEGGGCTS--SE-E-EESEEEEEEESEEEESSSESEEESSEE-------CEEEEESEEEES
T ss_pred EccCCeEEcceEEEecCCCCCcceE-E-EEeeeEEEEEEeecccccCcccccccc-------cceEEEeEEEec
Confidence 8999999999999753 5776 4 357899999999999888776665431 178899999853
No 31
>PLN02793 Probable polygalacturonase
Probab=96.84 E-value=0.066 Score=55.34 Aligned_cols=86 Identities=15% Similarity=0.265 Sum_probs=66.9
Q ss_pred EEEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEeeCCceEEEEeeEEec-----CCCCeeeeeeCC
Q 018853 173 CLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSY-----CTDGLIDAIMGS 247 (349)
Q Consensus 173 ~l~i~~a~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~gs~nVWIDHcS~s~-----~~Dglid~~~gs 247 (349)
.|.+.+++||.|++|++++. | .=.+.+.+++||.|++.++.. -.||. | ...+
T Consensus 179 ~i~f~~~~nv~v~gitl~nS-----------p----------~~~i~~~~~~nv~i~~l~I~~p~~spNTDGI-d-i~~s 235 (443)
T PLN02793 179 AITFHKCKDLRVENLNVIDS-----------Q----------QMHIAFTNCRRVTISGLKVIAPATSPNTDGI-H-ISAS 235 (443)
T ss_pred EEEEEeeccEEEECeEEEcC-----------C----------CeEEEEEccCcEEEEEEEEECCCCCCCCCcE-e-eecc
Confidence 47788999999999999964 1 125777899999999999975 36776 4 4679
Q ss_pred ceEEEEcceeccCCceeeccCCCCccCCCCceEEEEeeEec
Q 018853 248 TGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFG 288 (349)
Q Consensus 248 ~~ITISnn~f~~h~k~~L~G~sd~~~~d~g~~VTi~hN~F~ 288 (349)
++|+|++|.|..-+.+..+.+.. .+|++.++.+.
T Consensus 236 ~nV~I~n~~I~~gDDcIaik~~s-------~nI~I~n~~c~ 269 (443)
T PLN02793 236 RGVVIKDSIVRTGDDCISIVGNS-------SRIKIRNIACG 269 (443)
T ss_pred ceEEEEeCEEeCCCCeEEecCCc-------CCEEEEEeEEe
Confidence 99999999999988877775321 36777777764
No 32
>PLN02773 pectinesterase
Probab=96.76 E-value=0.33 Score=48.20 Aligned_cols=167 Identities=13% Similarity=0.162 Sum_probs=94.7
Q ss_pred hHHHHhhc----CCCeEEEEecCeEEEecceEEe---cCCceEEeeCce-EEEEe-----------------c-----cE
Q 018853 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGAN-VEITG-----------------N-----GC 173 (349)
Q Consensus 124 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~-i~I~G-----------------~-----g~ 173 (349)
|+.+||.. ...++++|=..|+-+ +.|.| .+|+||.|++.. ..|.. . +.
T Consensus 19 TIq~Aida~P~~~~~~~~I~Ik~G~Y~--E~V~I~~~k~~itl~G~~~~~TiI~~~~~a~~~~~~~~~~~~g~gT~~SaT 96 (317)
T PLN02773 19 TVQDAIDAVPLCNRCRTVIRVAPGVYR--QPVYVPKTKNLITLAGLSPEATVLTWNNTATKIDHHQASRVIGTGTFGCGT 96 (317)
T ss_pred CHHHHHhhchhcCCceEEEEEeCceEE--EEEEECcCCccEEEEeCCCCceEEEccCccccccccccccccCcCccCceE
Confidence 78888854 223556665667554 56677 468999998774 33331 1 23
Q ss_pred EEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEee-CCceEEEEeeEEecCCC--------------
Q 018853 174 LTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTD-------------- 238 (349)
Q Consensus 174 l~i~~a~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~-gs~nVWIDHcS~s~~~D-------------- 238 (349)
+.+ .+++++.+||+|++..+. ..+-|+-+. .++++-+.+|.|....|
T Consensus 97 v~v-~a~~f~a~nlT~~Nt~~~-----------------~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~~gr~yf~~c 158 (317)
T PLN02773 97 VIV-EGEDFIAENITFENSAPE-----------------GSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLRDC 158 (317)
T ss_pred EEE-ECCCeEEEeeEEEeCCCC-----------------CCCcEEEEEecCccEEEEccEeecccceeEeCCCCEEEEee
Confidence 444 589999999999986421 112333333 36778888888776444
Q ss_pred ---CeeeeeeCCceEEEEcceeccCCceeeccCCCCccCCCCceEEEEeeEecCCC------cCcCcccCCCeEEEEcce
Q 018853 239 ---GLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVAL------VQRMPRCRRGYIHVVNND 309 (349)
Q Consensus 239 ---glid~~~gs~~ITISnn~f~~h~k~~L~G~sd~~~~d~g~~VTi~hN~F~~n~------~~R~Pr~R~G~~HvvNN~ 309 (349)
|.+|.+-|.-..-+.+|.|..-..+.+--.+-... ....-..|.+|.+.... -.| |--.++.+=+.|.+
T Consensus 159 ~IeG~VDFIFG~g~a~Fe~c~i~s~~~g~ITA~~r~~~-~~~~GfvF~~c~it~~~~~~~~yLGR-pW~~~a~vVf~~t~ 236 (317)
T PLN02773 159 YIEGSVDFIFGNSTALLEHCHIHCKSAGFITAQSRKSS-QESTGYVFLRCVITGNGGSGYMYLGR-PWGPFGRVVFAYTY 236 (317)
T ss_pred EEeecccEEeeccEEEEEeeEEEEccCcEEECCCCCCC-CCCceEEEEccEEecCCCCcceeecC-CCCCCceEEEEecc
Confidence 55666667777778888876432232222211000 01123556666664211 112 22235677777777
Q ss_pred EeC
Q 018853 310 FTS 312 (349)
Q Consensus 310 ~~~ 312 (349)
+..
T Consensus 237 l~~ 239 (317)
T PLN02773 237 MDA 239 (317)
T ss_pred cCC
Confidence 753
No 33
>PLN02665 pectinesterase family protein
Probab=96.70 E-value=0.26 Score=49.86 Aligned_cols=120 Identities=16% Similarity=0.181 Sum_probs=75.9
Q ss_pred hHHHHhhc----CCCeEEEEecCeEEEecceEEe---cCCceEEeeCce-EEEEec-----------cEEEEeeeccEEE
Q 018853 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGAN-VEITGN-----------GCLTLQYVSHVII 184 (349)
Q Consensus 124 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~-i~I~G~-----------g~l~i~~a~NVII 184 (349)
|+.+||.+ +..++|+|=..|+-+ +.|.| ++++|+.|.+.. ..|... +.+.+ .+++++.
T Consensus 82 TIq~AIdaiP~~~~~r~vI~Ik~GvY~--EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~SaTv~v-~a~~F~a 158 (366)
T PLN02665 82 TITDAIKSIPAGNTQRVIIDIGPGEYN--EKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYSATLIV-ESDYFMA 158 (366)
T ss_pred CHHHHHhhCcccCCceEEEEEeCcEEE--EEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcceEEEEE-ECCCeEE
Confidence 88888854 233667776777654 66666 578999999774 334321 24444 6999999
Q ss_pred EeeEEEeeccCCCccccCCCCccccCCCCCCCcEEee-CCceEEEEeeEEecCCCC-----------------eeeeeeC
Q 018853 185 HNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDG-----------------LIDAIMG 246 (349)
Q Consensus 185 rnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~-gs~nVWIDHcS~s~~~Dg-----------------lid~~~g 246 (349)
+||.|++..|.+.+ ...+.-|+-+. .++++-+.+|.|....|= .+|.+-|
T Consensus 159 ~nitf~Nta~~~~~------------~~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~~~~gr~yf~~CyIeG~VDFIFG 226 (366)
T PLN02665 159 ANIIIKNSAPRPDG------------KRKGAQAVAMRISGDKAAFYNCRFIGFQDTLCDDKGRHFFKDCYIEGTVDFIFG 226 (366)
T ss_pred EeeEEEeCCCCcCC------------CCCCcceEEEEEcCCcEEEEcceeccccceeEeCCCCEEEEeeEEeeccceecc
Confidence 99999987542110 01122344433 468888999998876654 4445455
Q ss_pred CceEEEEcceec
Q 018853 247 STGITISNNYFS 258 (349)
Q Consensus 247 s~~ITISnn~f~ 258 (349)
.-..-+.+|.|.
T Consensus 227 ~g~a~fe~C~i~ 238 (366)
T PLN02665 227 SGKSLYLNTELH 238 (366)
T ss_pred ccceeeEccEEE
Confidence 555566666665
No 34
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=96.69 E-value=0.13 Score=49.32 Aligned_cols=188 Identities=21% Similarity=0.216 Sum_probs=113.9
Q ss_pred hHHHHhhcCCCeEEEEecCeEEEec----ceEEecCCceEEeeCc-----eEE---------EEecc------EEEEeee
Q 018853 124 TLRHAVIQTEPIWITFASNMLIKLK----HELIINSYKTIDGRGA-----NVE---------ITGNG------CLTLQYV 179 (349)
Q Consensus 124 tLr~av~~~~P~~IvF~~~g~I~L~----~~L~i~snkTI~G~ga-----~i~---------I~G~g------~l~i~~a 179 (349)
|+.+|+.+..|-.+|.=..|+.+-. -+|.+.+.+||.|..+ .+. |.|.+ .++|..+
T Consensus 17 Ti~~A~~~a~~g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~~~kG~~~il~~g~~~~~~I~g~~~~~~~qn~tI~~~ 96 (246)
T PF07602_consen 17 TITKALQAAQPGDTIQLAPGTYSEATGETFPIIIKPGVTLIGNESNKGQIDILITGGGTGPTISGGGPDLSGQNVTIILA 96 (246)
T ss_pred HHHHHHHhCCCCCEEEECCceeccccCCcccEEecCCeEEeecccCCCcceEEecCCceEEeEeccCccccceeEEEEec
Confidence 7888887655543333345666543 3588888899888533 122 33332 1455567
Q ss_pred ccEEEEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEeeCCceEEEEeeEEecC-CCCeeeeee----CCceEEEEc
Q 018853 180 SHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYC-TDGLIDAIM----GSTGITISN 254 (349)
Q Consensus 180 ~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~gs~nVWIDHcS~s~~-~Dglid~~~----gs~~ITISn 254 (349)
++..|++++|++..+ ..+-||.|.++ +.-|..|+|+.+ .+|...... ...+++|+.
T Consensus 97 ~~~~i~GvtItN~n~------------------~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~G 157 (246)
T PF07602_consen 97 NNATISGVTITNPNI------------------ARGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVISG 157 (246)
T ss_pred CCCEEEEEEEEcCCC------------------CcceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCcccceEeec
Confidence 888888888886321 24678999877 888999999997 566543222 345777888
Q ss_pred ceeccCCceeeccCCCCccCCCCceEEEEeeEecCCCc-----CcCcccCCC-eEEEEcceEeCCcceEEecCC--CceE
Q 018853 255 NYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALV-----QRMPRCRRG-YIHVVNNDFTSWEMYAIGGSA--NPTI 326 (349)
Q Consensus 255 n~f~~h~k~~L~G~sd~~~~d~g~~VTi~hN~F~~n~~-----~R~Pr~R~G-~~HvvNN~~~~~~~yaigg~~--~~~i 326 (349)
|.+.....+.-+ +++... ..-.+-+|++.+|.. ...|-+..+ .-.+-||.+.+.+.|.+.-.. .-++
T Consensus 158 N~~~~~~~Gi~i--~~~~~~---~~n~I~NN~I~~N~~Gi~~~~~~pDlG~~s~~~~g~N~~~~N~~~Dl~~~~~~~~~l 232 (246)
T PF07602_consen 158 NSIYFNKTGISI--SDNAAP---VENKIENNIIENNNIGIVAIGDAPDLGTGSEGSPGNNIFRNNGRYDLNNSATPGQTL 232 (246)
T ss_pred ceEEecCcCeEE--EcccCC---ccceeeccEEEeCCcCeEeeccCCccccCCCCCCCCcEEecCcceeeEeccCCceeE
Confidence 877754332211 111111 112446677754321 011332221 334778999999988887643 3489
Q ss_pred EEEcceEeC
Q 018853 327 NSQGNRYTA 335 (349)
Q Consensus 327 ~~egN~F~~ 335 (349)
++.||-...
T Consensus 233 ~a~gN~ld~ 241 (246)
T PF07602_consen 233 YAVGNQLDH 241 (246)
T ss_pred EEeCCccCC
Confidence 999998754
No 35
>PLN02682 pectinesterase family protein
Probab=96.45 E-value=0.066 Score=54.15 Aligned_cols=198 Identities=13% Similarity=0.111 Sum_probs=107.3
Q ss_pred hHHHHhhc----CCCeEEEEecCeEEEecceEEe---cCCceEEeeCce-EEEEe------------------ccEEEEe
Q 018853 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGAN-VEITG------------------NGCLTLQ 177 (349)
Q Consensus 124 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~-i~I~G------------------~g~l~i~ 177 (349)
|+.+||.+ +..+++|+=..|+-+ +.|.| .+|+||.|.|.. ..|.. .+.+.+
T Consensus 84 TIQ~AIdavP~~~~~r~vI~Ik~G~Y~--EkV~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~~~g~~~gT~~SAT~~v- 160 (369)
T PLN02682 84 TIQAAIDSLPVINLVRVVIKVNAGTYR--EKVNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGGRPLGTYGSATFAV- 160 (369)
T ss_pred CHHHHHhhccccCCceEEEEEeCceee--EEEEEeccCceEEEEecCCCccEEEeccccCccCCCCCccccccceEEEE-
Confidence 78888854 223555555566553 56666 579999999875 33431 113444
Q ss_pred eeccEEEEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEee-CCceEEEEeeEEecCCC-----------------C
Q 018853 178 YVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTD-----------------G 239 (349)
Q Consensus 178 ~a~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~-gs~nVWIDHcS~s~~~D-----------------g 239 (349)
.+++++.+||.|++..+... + | ..+.-|+-+. .++++-+.+|.|....| |
T Consensus 161 ~a~~F~a~nlTf~Nt~~~~~------~---g---~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~~gRqyf~~C~IeG 228 (369)
T PLN02682 161 NSPYFIAKNITFKNTAPVPP------P---G---ALGKQAVALRISADTAAFYGCKFLGAQDTLYDHLGRHYFKDCYIEG 228 (369)
T ss_pred ECCCeEEEeeEEEcccccCC------C---C---CCcccEEEEEecCCcEEEEcceEeccccceEECCCCEEEEeeEEcc
Confidence 58999999999998643100 0 1 1122344443 47888899998887655 5
Q ss_pred eeeeeeCCceEEEEcceeccC--CceeeccCCCCccCCCCceEEEEeeEecCC-C--cCcCcccCCCeEEEEcceEeC--
Q 018853 240 LIDAIMGSTGITISNNYFSHH--NEVMLLGHNDKYALDMGMQVTIAFNHFGVA-L--VQRMPRCRRGYIHVVNNDFTS-- 312 (349)
Q Consensus 240 lid~~~gs~~ITISnn~f~~h--~k~~L~G~sd~~~~d~g~~VTi~hN~F~~n-~--~~R~Pr~R~G~~HvvNN~~~~-- 312 (349)
.+|.+-|.-..-+++|.|..- ..+.+--++-.. .....-..|++|.+... . -.|-.+ .+..+=+.|.++.+
T Consensus 229 ~VDFIFG~g~a~Fe~C~I~s~~~~~G~ITA~~r~~-~~~~~GfvF~~C~itg~g~~yLGRpW~-~yarvVf~~t~m~~~I 306 (369)
T PLN02682 229 SVDFIFGNGLSLYEGCHLHAIARNFGALTAQKRQS-VLEDTGFSFVNCKVTGSGALYLGRAWG-TFSRVVFAYTYMDNII 306 (369)
T ss_pred cccEEecCceEEEEccEEEEecCCCeEEecCCCCC-CCCCceEEEEeeEecCCCceEeecCCC-CcceEEEEeccCCCcC
Confidence 566666666777777777531 112222111000 01112355666666310 0 123322 25677778887753
Q ss_pred ----CcceEEecCCCceEEEEcceEeCCCC
Q 018853 313 ----WEMYAIGGSANPTINSQGNRYTAPPD 338 (349)
Q Consensus 313 ----~~~yaigg~~~~~i~~egN~F~~~~~ 338 (349)
|...........-.+.|-|-+-++.+
T Consensus 307 ~p~GW~~w~~~~~~~t~~faEy~ntGpGa~ 336 (369)
T PLN02682 307 IPRGWYNWGDPNREMTVFYGQYKCTGPGAN 336 (369)
T ss_pred cCcccCcCCCCCCCCceEEEEecccCCCCC
Confidence 33222112222233566555555544
No 36
>smart00656 Amb_all Amb_all domain.
Probab=96.38 E-value=0.37 Score=44.13 Aligned_cols=136 Identities=20% Similarity=0.193 Sum_probs=77.3
Q ss_pred CCceEEeeCceEEEEeccEEEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCCCCCCCc-EEee-CCceEEEEeeE
Q 018853 155 SYKTIDGRGANVEITGNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDG-ISIF-GSQKIWVDHCS 232 (349)
Q Consensus 155 snkTI~G~ga~i~I~G~g~l~i~~a~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDa-Isi~-gs~nVWIDHcS 232 (349)
.|++|.+-.......+. .|.+.+++||.|.+..|....+. +.. ....|+ +.+. ++.+|=|-.|.
T Consensus 45 rnl~i~~~~~~~~~~~D-~i~~~~~~~VwIDHct~s~~~~~------------~~~-~~~~D~~~di~~~s~~vTvs~~~ 110 (190)
T smart00656 45 RNLTIHDPKPVYGSDGD-AISIDGSSNVWIDHVSLSGCTVT------------GFG-DDTYDGLIDIKNGSTYVTISNNY 110 (190)
T ss_pred eCCEEECCccCCCCCCC-EEEEeCCCeEEEEccEeEcceec------------cCC-CCCCCccEEECcccccEEEECce
Confidence 46666654321111122 37888899999999999864211 111 112344 4454 56777777777
Q ss_pred EecCCCCeeeeeeCC------ceEEEEcceeccCCceeeccCCCCccCCCCceEEEEeeEecCCCcCcCcccC-CCeEEE
Q 018853 233 LSYCTDGLIDAIMGS------TGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCR-RGYIHV 305 (349)
Q Consensus 233 ~s~~~Dglid~~~gs------~~ITISnn~f~~h~k~~L~G~sd~~~~d~g~~VTi~hN~F~~n~~~R~Pr~R-~G~~Hv 305 (349)
|....-+.+--...+ -.||+.+|+|.+... -. ..-+.-++-+.+|+|. +..+..--++ .+.+.+
T Consensus 111 f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~-----R~---P~~r~g~~hv~NN~~~-n~~~~~~~~~~~~~v~~ 181 (190)
T smart00656 111 FHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQ-----RA---PRVRFGYVHVYNNYYT-GWTSYAIGGRMGATILS 181 (190)
T ss_pred EecCCEEEEEccCCCccccccceEEEECcEEcCccc-----CC---CcccCCEEEEEeeEEe-CcccEeEecCCCcEEEE
Confidence 765433333111111 269999999986321 11 1112226888999995 4433333333 358999
Q ss_pred EcceEeCC
Q 018853 306 VNNDFTSW 313 (349)
Q Consensus 306 vNN~~~~~ 313 (349)
-||+|.+-
T Consensus 182 E~N~F~~~ 189 (190)
T smart00656 182 EGNYFEAP 189 (190)
T ss_pred ECeEEECC
Confidence 99999863
No 37
>PLN02304 probable pectinesterase
Probab=96.22 E-value=0.12 Score=52.43 Aligned_cols=121 Identities=18% Similarity=0.293 Sum_probs=78.3
Q ss_pred hHHHHhhc----CCCeEEEEecCeEEEecceEEe---cCCceEEeeCce-EEEEe------------ccEEEEeeeccEE
Q 018853 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGAN-VEITG------------NGCLTLQYVSHVI 183 (349)
Q Consensus 124 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~-i~I~G------------~g~l~i~~a~NVI 183 (349)
|+.+||.+ +..+++||=..|+-+ +.|.| ++|+||.|+|.. ..|.. .+.+.+ .+++++
T Consensus 89 TIQ~AIdavP~~~~~r~vI~Ik~GvY~--EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~gT~~SaTv~v-~a~~F~ 165 (379)
T PLN02304 89 TVQSAVDAVGNFSQKRNVIWINSGIYY--EKVTVPKTKPNITFQGQGFDSTAIAWNDTAKSANGTFYSASVQV-FASNFI 165 (379)
T ss_pred CHHHHHhhCcccCCCcEEEEEeCeEeE--EEEEECCCCCcEEEEecCCCCcEEEccCcccCCCCccceEEEEE-ECCCeE
Confidence 88888854 233566666667654 66777 579999999875 23331 123444 589999
Q ss_pred EEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEee-CCceEEEEeeEEecCCC-----------------Ceeeeee
Q 018853 184 IHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTD-----------------GLIDAIM 245 (349)
Q Consensus 184 IrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~-gs~nVWIDHcS~s~~~D-----------------glid~~~ 245 (349)
.+||.|++..+... + | ..++-|+-+. .++++-+.+|.|....| |.+|.+-
T Consensus 166 a~nITf~Nta~~~~------~---g---~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~~gR~Yf~~CyIeG~VDFIF 233 (379)
T PLN02304 166 AKNISFMNVAPIPK------P---G---DVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDDRGRHYFKDCYIQGSIDFIF 233 (379)
T ss_pred EEeeEEEecCCCCC------C---C---CCCccEEEEEecCCcEEEEeceEecccceeEeCCCCEEEEeeEEcccccEEe
Confidence 99999998653210 0 1 1223455544 47888899999987655 4555656
Q ss_pred CCceEEEEcceecc
Q 018853 246 GSTGITISNNYFSH 259 (349)
Q Consensus 246 gs~~ITISnn~f~~ 259 (349)
|.-..-+++|.|..
T Consensus 234 G~g~A~Fe~C~I~s 247 (379)
T PLN02304 234 GDARSLYENCRLIS 247 (379)
T ss_pred ccceEEEEccEEEE
Confidence 66666777777753
No 38
>PLN02432 putative pectinesterase
Probab=96.21 E-value=0.11 Score=51.06 Aligned_cols=166 Identities=13% Similarity=0.164 Sum_probs=94.3
Q ss_pred hHHHHhhc----CCCeEEEEecCeEEEecceEEe---cCCceEEeeCceE-EEE--------eccEEEEeeeccEEEEee
Q 018853 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANV-EIT--------GNGCLTLQYVSHVIIHNV 187 (349)
Q Consensus 124 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~i-~I~--------G~g~l~i~~a~NVIIrnL 187 (349)
|+.+||.+ +..++++|=..|+- .+.|.| .+|+||.|.+..- .|. +.+.+++ .+++++.+||
T Consensus 25 TIq~Aida~p~~~~~~~~I~I~~G~Y--~E~V~ip~~k~~itl~G~~~~~TvI~~~~~~~~~~saT~~v-~a~~f~a~nl 101 (293)
T PLN02432 25 KIQDAIDAVPSNNSQLVFIWVKPGIY--REKVVVPADKPFITLSGTQASNTIITWNDGGDIFESPTLSV-LASDFVGRFL 101 (293)
T ss_pred CHHHHHhhccccCCceEEEEEeCcee--EEEEEEeccCceEEEEEcCCCCeEEEecCCcccccceEEEE-ECCCeEEEee
Confidence 78888854 22355555556655 456666 5799999998753 332 1224555 6899999999
Q ss_pred EEEeeccCCCccccCCCCccccCCCCCCCcEEee-CCceEEEEeeEEecCCC-----------------CeeeeeeCCce
Q 018853 188 HIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTD-----------------GLIDAIMGSTG 249 (349)
Q Consensus 188 ~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~-gs~nVWIDHcS~s~~~D-----------------glid~~~gs~~ 249 (349)
.|++..+. .+-|+-+. .++++-+.+|.|....| |.+|.+-|.-.
T Consensus 102 t~~Nt~g~------------------~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~~gr~yf~~c~I~G~VDFIFG~g~ 163 (293)
T PLN02432 102 TIQNTFGS------------------SGKAVALRVAGDRAAFYGCRILSYQDTLLDDTGRHYYRNCYIEGATDFICGNAA 163 (293)
T ss_pred EEEeCCCC------------------CCceEEEEEcCCcEEEEcceEecccceeEECCCCEEEEeCEEEecccEEecCce
Confidence 99985321 12344443 47888888998887655 44555556666
Q ss_pred EEEEcceeccCC--ceeeccCCCCccCCCCceEEEEeeEecCCC---cCcCcccCCCeEEEEcceEeC
Q 018853 250 ITISNNYFSHHN--EVMLLGHNDKYALDMGMQVTIAFNHFGVAL---VQRMPRCRRGYIHVVNNDFTS 312 (349)
Q Consensus 250 ITISnn~f~~h~--k~~L~G~sd~~~~d~g~~VTi~hN~F~~n~---~~R~Pr~R~G~~HvvNN~~~~ 312 (349)
.-+.+|.|..-. .+.+--++... .+...-..|++|.+.... -.| |--.+..+=+.|.++..
T Consensus 164 a~Fe~c~i~s~~~~~g~itA~~r~~-~~~~~Gfvf~~c~itg~g~~yLGR-pW~~~srvvf~~t~l~~ 229 (293)
T PLN02432 164 SLFEKCHLHSLSPNNGAITAQQRTS-ASENTGFTFLGCKLTGAGTTYLGR-PWGPYSRVVFALSYMSS 229 (293)
T ss_pred EEEEeeEEEEecCCCCeEEecCCCC-CCCCceEEEEeeEEcccchhhccC-CCCCccEEEEEecccCC
Confidence 677777775311 12222111110 111123566777663100 112 22225677777777753
No 39
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=96.02 E-value=0.14 Score=54.92 Aligned_cols=116 Identities=16% Similarity=0.252 Sum_probs=79.7
Q ss_pred hHHHHhhc----CCCeEEEEecCeEEEecceEEe---cCCceEEeeCce-EEEEec------------cEEEEeeeccEE
Q 018853 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGAN-VEITGN------------GCLTLQYVSHVI 183 (349)
Q Consensus 124 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~-i~I~G~------------g~l~i~~a~NVI 183 (349)
|+.+||.+ ...+++|+=..|+-+ +.|.| .+|+||.|.|.. ..|++. +.+.+ .+++++
T Consensus 299 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v-~~~~F~ 375 (596)
T PLN02745 299 TISDALAAMPAKYEGRYVIYVKQGIYD--ETVTVDKKMVNVTMYGDGSQKTIVTGNKNFADGVRTFRTATFVA-LGEGFM 375 (596)
T ss_pred cHHHHHHhccccCCceEEEEEeCCeeE--EEEEEcCCCceEEEEecCCCceEEEECCcccCCCcceeeEEEEE-EcCCEE
Confidence 88888864 234666666667664 55666 469999999985 344431 13444 689999
Q ss_pred EEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEee-CCceEEEEeeEEecCCC-----------------Ceeeeee
Q 018853 184 IHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTD-----------------GLIDAIM 245 (349)
Q Consensus 184 IrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~-gs~nVWIDHcS~s~~~D-----------------glid~~~ 245 (349)
.+||.|++... + ..+-|+-+. .++.+-+.+|.|....| |.+|.+-
T Consensus 376 a~nitf~Ntag--~---------------~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIF 438 (596)
T PLN02745 376 AKSMGFRNTAG--P---------------EKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQTHRQFYRSCVITGTIDFIF 438 (596)
T ss_pred EEeeEEEECCC--C---------------CCCceEEEEEcCCcEEEEeeEEeecccccccCCCcEEEEeeEEEeeccEEe
Confidence 99999998531 0 122344443 57888999999887654 6677777
Q ss_pred CCceEEEEcceecc
Q 018853 246 GSTGITISNNYFSH 259 (349)
Q Consensus 246 gs~~ITISnn~f~~ 259 (349)
|.-..-+++|.|.-
T Consensus 439 G~a~avf~~C~i~~ 452 (596)
T PLN02745 439 GDAAAIFQNCLIFV 452 (596)
T ss_pred cceeEEEEecEEEE
Confidence 88888888888864
No 40
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=95.96 E-value=0.11 Score=54.93 Aligned_cols=119 Identities=17% Similarity=0.291 Sum_probs=81.5
Q ss_pred CCh---hHHHHhhc----CCCeEEEEecCeEEEecceEEe---cCCceEEeeCce-EEEEec------------cEEEEe
Q 018853 121 TPG---TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGAN-VEITGN------------GCLTLQ 177 (349)
Q Consensus 121 ~pG---tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~-i~I~G~------------g~l~i~ 177 (349)
|+| |+.+||.+ +..++||+=..|+-+ +.+.| .+|+||.|.|.. ..|.+. +.+.+
T Consensus 238 GsG~f~TIq~Ai~a~p~~~~~r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v- 314 (541)
T PLN02416 238 GTGNFSTITDAINFAPNNSNDRIIIYVREGVYE--ENVEIPIYKTNIVLIGDGSDVTFITGNRSVVDGWTTFRSATLAV- 314 (541)
T ss_pred CCCCccCHHHHHHhhhhcCCceEEEEEeCceeE--EEEecCCCCccEEEEecCCCceEEeCCCccCCCCCccceEEEEE-
Confidence 555 88888854 345777777777654 55666 479999999975 344431 23555
Q ss_pred eeccEEEEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEee-CCceEEEEeeEEecCCC-----------------C
Q 018853 178 YVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTD-----------------G 239 (349)
Q Consensus 178 ~a~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~-gs~nVWIDHcS~s~~~D-----------------g 239 (349)
.+++++.+||.|++... . ..+-|+-+. .++++-+-+|.|....| |
T Consensus 315 ~~~~F~a~nitf~Ntag--------------~---~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~Rqyy~~C~I~G 377 (541)
T PLN02416 315 SGEGFLARDITIENTAG--------------P---EKHQAVALRVNADLVALYRCTINGYQDTLYVHSFRQFYRECDIYG 377 (541)
T ss_pred ECCCeEEEeeEEEECCC--------------C---CCCceEEEEEcCccEEEEcceEecccchhccCCCceEEEeeEEee
Confidence 58999999999998531 1 112334333 46788888888877544 6
Q ss_pred eeeeeeCCceEEEEcceecc
Q 018853 240 LIDAIMGSTGITISNNYFSH 259 (349)
Q Consensus 240 lid~~~gs~~ITISnn~f~~ 259 (349)
.+|.+-|.-..-+++|.|..
T Consensus 378 tVDFIFG~a~avfq~c~i~~ 397 (541)
T PLN02416 378 TIDYIFGNAAVVFQACNIVS 397 (541)
T ss_pred ccceeeccceEEEeccEEEE
Confidence 67777778888888898864
No 41
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=95.93 E-value=0.15 Score=53.89 Aligned_cols=116 Identities=16% Similarity=0.235 Sum_probs=77.9
Q ss_pred hHHHHhhc----CCCeEEEEecCeEEEecceEEe---cCCceEEeeCce-EEEEe------------ccEEEEeeeccEE
Q 018853 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGAN-VEITG------------NGCLTLQYVSHVI 183 (349)
Q Consensus 124 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~-i~I~G------------~g~l~i~~a~NVI 183 (349)
|+.+||.+ ...+++|+=..|+-+ +.|.| .+|+||.|.|.. ..|.+ .+.+.+ .+++++
T Consensus 232 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~itl~G~g~~~TiIt~~~~~~dg~~T~~SaT~~v-~a~~F~ 308 (530)
T PLN02933 232 TINEAVSAAPNSSETRFIIYIKGGEYF--ENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTFQTATVGV-KGKGFI 308 (530)
T ss_pred CHHHHHHhchhcCCCcEEEEEcCceEE--EEEEecCCCceEEEEEcCCCCcEEEeCCccCCCCccccceEEEE-ECCCEE
Confidence 77778754 223556665666664 55666 468999999875 34442 123444 589999
Q ss_pred EEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEee-CCceEEEEeeEEecCCC-----------------Ceeeeee
Q 018853 184 IHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTD-----------------GLIDAIM 245 (349)
Q Consensus 184 IrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~-gs~nVWIDHcS~s~~~D-----------------glid~~~ 245 (349)
.+||.|++..+ . ...-|+-+. .++++-+.+|.|....| |.+|.+-
T Consensus 309 a~nitf~Ntag--------------~---~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~IeGtVDFIF 371 (530)
T PLN02933 309 AKDISFVNYAG--------------P---AKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHSAKQFYRECDIYGTIDFIF 371 (530)
T ss_pred EEeeEEEECCC--------------C---CCCceEEEEEcCCcEEEEEeEEEecccccccCCCceEEEeeEEecccceec
Confidence 99999998531 1 123445544 57888999999987654 6677777
Q ss_pred CCceEEEEcceecc
Q 018853 246 GSTGITISNNYFSH 259 (349)
Q Consensus 246 gs~~ITISnn~f~~ 259 (349)
|.-..-+++|.|.-
T Consensus 372 G~a~avFq~C~i~~ 385 (530)
T PLN02933 372 GNAAVVFQNCSLYA 385 (530)
T ss_pred cCceEEEeccEEEE
Confidence 77778888888863
No 42
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=95.92 E-value=0.1 Score=53.40 Aligned_cols=143 Identities=22% Similarity=0.284 Sum_probs=92.8
Q ss_pred eEEEEecCeEEEecceEEecCCceEEeeCceE------EEE-----eccEEEEeeeccEEEEeeEEEeeccCCCccccCC
Q 018853 135 IWITFASNMLIKLKHELIINSYKTIDGRGANV------EIT-----GNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASS 203 (349)
Q Consensus 135 ~~IvF~~~g~I~L~~~L~i~snkTI~G~ga~i------~I~-----G~g~l~i~~a~NVIIrnL~I~~~~p~~~~~v~~~ 203 (349)
.||.|.. -..|.|...=||+|+|..- ... ..-.|.+..++||.|++|++++.
T Consensus 114 ~~i~~~~------~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nS----------- 176 (404)
T PLN02188 114 DWIEFGW------VNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNS----------- 176 (404)
T ss_pred ceEEEec------eeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcC-----------
Confidence 4777741 1235555566788888631 000 01146777899999999999974
Q ss_pred CCccccCCCCCCCcEEeeCCceEEEEeeEEec-----CCCCeeeeeeCCceEEEEcceeccCCceeeccCCCCccCCCCc
Q 018853 204 PTHVGYRGKSDGDGISIFGSQKIWVDHCSLSY-----CTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGM 278 (349)
Q Consensus 204 ~~~~G~r~~~dgDaIsi~gs~nVWIDHcS~s~-----~~Dglid~~~gs~~ITISnn~f~~h~k~~L~G~sd~~~~d~g~ 278 (349)
| .=.+.+..++||.|++.++.. -.||. | ...+++|+|.+|.|..-+.+.-+++.. -
T Consensus 177 p----------~w~i~~~~~~~v~i~~v~I~~~~~spNtDGi-d-i~~s~nV~I~n~~I~~GDDcIaiksg~-------~ 237 (404)
T PLN02188 177 K----------FFHIALVECRNFKGSGLKISAPSDSPNTDGI-H-IERSSGVYISDSRIGTGDDCISIGQGN-------S 237 (404)
T ss_pred C----------CeEEEEEccccEEEEEEEEeCCCCCCCCCcE-e-eeCcccEEEEeeEEeCCCcEEEEccCC-------c
Confidence 1 126788899999999999986 35776 4 467899999999999988877775421 2
Q ss_pred eEEEEeeEecCCC------cCcCcc-cCCCeEEEEcceEeCC
Q 018853 279 QVTIAFNHFGVAL------VQRMPR-CRRGYIHVVNNDFTSW 313 (349)
Q Consensus 279 ~VTi~hN~F~~n~------~~R~Pr-~R~G~~HvvNN~~~~~ 313 (349)
+|++.++....+. ..+.+. -....+.+-|+.+++-
T Consensus 238 nI~I~n~~c~~ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t 279 (404)
T PLN02188 238 QVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGT 279 (404)
T ss_pred cEEEEEEEEcCCCcEEeCCCCCCCcCCcEEEEEEEeeEEECC
Confidence 5777776664211 111010 0122577888888764
No 43
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=95.92 E-value=0.14 Score=55.60 Aligned_cols=119 Identities=17% Similarity=0.249 Sum_probs=81.1
Q ss_pred CCh---hHHHHhhc----CCCeEEEEecCeEEEecceEEe---cCCceEEeeCceE-EEEec------------cEEEEe
Q 018853 121 TPG---TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANV-EITGN------------GCLTLQ 177 (349)
Q Consensus 121 ~pG---tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~i-~I~G~------------g~l~i~ 177 (349)
|.| |+.+||.+ ...++||+=..|+- .+.|.| ..|+|+.|.|..- .|++. +.+.+
T Consensus 258 GsG~f~TIq~Av~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~Gdg~~~TiIt~~~~~~dg~~T~~SAT~~v- 334 (670)
T PLN02217 258 GSGQYKTINEALNFVPKKKNTTFVVHIKAGIY--KEYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTATVAI- 334 (670)
T ss_pred CCCCccCHHHHHHhccccCCceEEEEEeCCce--EEEEEEcCCCCcEEEEecCCCCeEEEcCCccCCCCCccceEEEEE-
Confidence 555 88888854 23466666666755 355666 3588999998753 34321 13444
Q ss_pred eeccEEEEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEee-CCceEEEEeeEEecCCC-----------------C
Q 018853 178 YVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTD-----------------G 239 (349)
Q Consensus 178 ~a~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~-gs~nVWIDHcS~s~~~D-----------------g 239 (349)
.+++++.+||.|++... ..+.-|+-+. .+++.-+.+|.|....| |
T Consensus 335 ~g~~F~a~nitf~Ntag-----------------~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~G 397 (670)
T PLN02217 335 VGDHFIAKNIGFENTAG-----------------AIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSHRQFYRDCTISG 397 (670)
T ss_pred ECCCeEEEeeEEEeCCC-----------------CCCCceEEEEecCCcEEEEcceeeeccchhccCCCcEEEEeCEEEE
Confidence 58999999999998531 1123455554 57888899998876544 6
Q ss_pred eeeeeeCCceEEEEcceecc
Q 018853 240 LIDAIMGSTGITISNNYFSH 259 (349)
Q Consensus 240 lid~~~gs~~ITISnn~f~~ 259 (349)
.+|.+-|.-..-++||.|.-
T Consensus 398 tVDFIFG~a~avfq~C~I~~ 417 (670)
T PLN02217 398 TIDFLFGDAAAVFQNCTLLV 417 (670)
T ss_pred eccEEecCceEEEEccEEEE
Confidence 77887788888899999863
No 44
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=95.90 E-value=0.13 Score=54.38 Aligned_cols=166 Identities=14% Similarity=0.185 Sum_probs=99.1
Q ss_pred hHHHHhhc-----CCCeEEEEecCeEEEecceEEe---cCCceEEeeCce-EEEEec------------cEEEEeeeccE
Q 018853 124 TLRHAVIQ-----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGAN-VEITGN------------GCLTLQYVSHV 182 (349)
Q Consensus 124 tLr~av~~-----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~-i~I~G~------------g~l~i~~a~NV 182 (349)
|+.+||.+ ...++++|=..|+-+ +.+.| .+|+||.|.|.. ..|++. +.+.+ .++++
T Consensus 239 TIq~AI~a~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~nItl~G~g~~~TiIt~~~~~~~g~~T~~SaTv~v-~~~~F 315 (529)
T PLN02170 239 TIGEALLSTSLESGGGRTVIYLKAGTYH--ENLNIPTKQKNVMLVGDGKGKTVIVGSRSNRGGWTTYQTATVAA-MGDGF 315 (529)
T ss_pred hHHHHHHhcccccCCceEEEEEeCCeeE--EEEecCCCCceEEEEEcCCCCeEEEeCCcCCCCCccccceEEEE-EcCCe
Confidence 88889963 123677776777754 55666 579999999875 444431 13444 69999
Q ss_pred EEEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEee-CCceEEEEeeEEecCCC-----------------Ceeeee
Q 018853 183 IIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTD-----------------GLIDAI 244 (349)
Q Consensus 183 IIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~-gs~nVWIDHcS~s~~~D-----------------glid~~ 244 (349)
+.+||.|++.... ..+-|+-+. .++++.+.+|.|....| |.+|.+
T Consensus 316 ~a~nitf~Ntag~-----------------~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~~~Rqyy~~C~I~GtVDFI 378 (529)
T PLN02170 316 IARDITFVNSAGP-----------------NSEQAVALRVGSDKSVVYRCSVEGYQDSLYTHSKRQFYRETDITGTVDFI 378 (529)
T ss_pred EEEeeEEEecCCC-----------------CCCceEEEEecCCcEEEEeeeEeccCCcceeCCCCEEEEeeEEcccccee
Confidence 9999999985310 112344443 47888888999887544 667777
Q ss_pred eCCceEEEEcceeccCC----ceeeccCCCCccCCCCceEEEEeeEecCCC---cCcCcccCCCeEEEEcceEe
Q 018853 245 MGSTGITISNNYFSHHN----EVMLLGHNDKYALDMGMQVTIAFNHFGVAL---VQRMPRCRRGYIHVVNNDFT 311 (349)
Q Consensus 245 ~gs~~ITISnn~f~~h~----k~~L~G~sd~~~~d~g~~VTi~hN~F~~n~---~~R~Pr~R~G~~HvvNN~~~ 311 (349)
-|.-..-+++|.|.--. ...+--++... .+...-..|++|.+.... -+|-.+ .+..+=+.|.++.
T Consensus 379 FG~a~avFq~C~I~~~~~~~~~g~ITAq~R~~-~~~~~Gfvf~~C~it~~~~~yLGRPW~-~ysrvVf~~t~l~ 450 (529)
T PLN02170 379 FGNSAVVFQSCNIAARKPSGDRNYVTAQGRSD-PNQNTGISIHNCRITAESMTYLGRPWK-EYSRTVVMQSFID 450 (529)
T ss_pred cccceEEEeccEEEEecCCCCceEEEecCCCC-CCCCceEEEEeeEEecCCceeeeCCCC-CCceEEEEecccC
Confidence 77777888888886421 11121111000 011134677777763210 123222 2566777777765
No 45
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=95.88 E-value=0.15 Score=54.57 Aligned_cols=117 Identities=16% Similarity=0.258 Sum_probs=79.7
Q ss_pred hHHHHhhc----CCCeEEEEecCeEEEecceEEe---cCCceEEeeCce-EEEEecc------------EEEEeeeccEE
Q 018853 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGAN-VEITGNG------------CLTLQYVSHVI 183 (349)
Q Consensus 124 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~-i~I~G~g------------~l~i~~a~NVI 183 (349)
|+.+||.+ +..++||+=..|+-+-+ .|.| .+|+||.|.|.. ..|+++. .+.+ .+++++
T Consensus 286 TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~-~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT~~v-~~~~F~ 363 (587)
T PLN02484 286 TISEAIKKAPEHSSRRTIIYVKAGRYEEN-NLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTASFAA-TGAGFI 363 (587)
T ss_pred cHHHHHHhccccCCCcEEEEEeCCEEEEE-EEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEEEEE-EcCCEE
Confidence 78888854 23467777677776421 3666 479999999875 4454321 2333 589999
Q ss_pred EEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEee-CCceEEEEeeEEecCCC-----------------Ceeeeee
Q 018853 184 IHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTD-----------------GLIDAIM 245 (349)
Q Consensus 184 IrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~-gs~nVWIDHcS~s~~~D-----------------glid~~~ 245 (349)
.+||.|++..+. ...-|+-+. .+++.-+.+|.|....| |.+|.+-
T Consensus 364 a~~itf~Ntag~-----------------~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIF 426 (587)
T PLN02484 364 ARDMTFENWAGP-----------------AKHQAVALRVGADHAVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIF 426 (587)
T ss_pred EEeeEEEECCCC-----------------CCCceEEEEecCCcEEEEeeeEeccCcccccCCCcEEEEecEEEeccceec
Confidence 999999985311 122344444 57888888898877544 6677777
Q ss_pred CCceEEEEcceecc
Q 018853 246 GSTGITISNNYFSH 259 (349)
Q Consensus 246 gs~~ITISnn~f~~ 259 (349)
|.-..-+++|.|.-
T Consensus 427 G~a~avfq~C~i~~ 440 (587)
T PLN02484 427 GNAAVVLQNCSIYA 440 (587)
T ss_pred ccceeEEeccEEEE
Confidence 88888889998864
No 46
>PLN02916 pectinesterase family protein
Probab=95.87 E-value=0.17 Score=53.16 Aligned_cols=116 Identities=16% Similarity=0.196 Sum_probs=78.1
Q ss_pred hHHHHhhc-------CCCeEEEEecCeEEEecceEEe---cCCceEEeeCce-EEEEe------------ccEEEEeeec
Q 018853 124 TLRHAVIQ-------TEPIWITFASNMLIKLKHELII---NSYKTIDGRGAN-VEITG------------NGCLTLQYVS 180 (349)
Q Consensus 124 tLr~av~~-------~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~-i~I~G------------~g~l~i~~a~ 180 (349)
|+.+||.+ ...+++||=..|+-+ +.+.| .+|+||.|.|.. ..|++ .+.+.+ .++
T Consensus 201 TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v-~~~ 277 (502)
T PLN02916 201 TINQALAALSRMGKSRTNRVIIYVKAGVYN--EKVEIDRHMKNVMFVGDGMDKTIITNNRNVPDGSTTYSSATFGV-SGD 277 (502)
T ss_pred CHHHHHHhcccccCCCCceEEEEEeCceee--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcceeeEEEEE-ECC
Confidence 78888843 134677776677664 55666 468999999875 34432 113444 589
Q ss_pred cEEEEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEee-CCceEEEEeeEEecCCC-----------------Ceee
Q 018853 181 HVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTD-----------------GLID 242 (349)
Q Consensus 181 NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~-gs~nVWIDHcS~s~~~D-----------------glid 242 (349)
+++.+||.|++..+. ...-|+-+. .++..-+.+|.|....| |.+|
T Consensus 278 ~F~A~nitf~Ntag~-----------------~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVD 340 (502)
T PLN02916 278 GFWARDITFENTAGP-----------------HKHQAVALRVSSDLSVFYRCSFKGYQDTLFVHSLRQFYRDCHIYGTID 340 (502)
T ss_pred CEEEEeeEEEeCCCC-----------------CCCceEEEEEcCCcEEEEeeeEeccCceeEeCCCCEEEEecEEecccc
Confidence 999999999985311 112344443 47888888898877544 6677
Q ss_pred eeeCCceEEEEcceecc
Q 018853 243 AIMGSTGITISNNYFSH 259 (349)
Q Consensus 243 ~~~gs~~ITISnn~f~~ 259 (349)
.+-|.-..-+++|.|.-
T Consensus 341 FIFG~a~avFq~C~I~~ 357 (502)
T PLN02916 341 FIFGDAAVVFQNCDIFV 357 (502)
T ss_pred eeccCceEEEecCEEEE
Confidence 77777788888888863
No 47
>PLN02497 probable pectinesterase
Probab=95.84 E-value=0.25 Score=49.36 Aligned_cols=122 Identities=14% Similarity=0.233 Sum_probs=76.4
Q ss_pred hHHHHhhc----CCCeEEEEecCeEEEecceEEe---cCCceEEeeCce-EEEE--------eccEEEEeeeccEEEEee
Q 018853 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGAN-VEIT--------GNGCLTLQYVSHVIIHNV 187 (349)
Q Consensus 124 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~-i~I~--------G~g~l~i~~a~NVIIrnL 187 (349)
|+.+||.+ ...+++++=..|+- ++.|.| ++++||.|+|.. ..|. +.+.+++ .+++++.+||
T Consensus 46 TIq~AIdavP~~~~~~~~I~Ik~G~Y--~EkV~Ip~~k~~itl~G~g~~~tiIt~~~~~~t~~SaT~~v-~a~~f~a~nl 122 (331)
T PLN02497 46 TIQSAIDSVPSNNKHWFCINVKAGLY--REKVKIPYDKPFIVLVGAGKRRTRIEWDDHDSTAQSPTFST-LADNTVVKSI 122 (331)
T ss_pred CHHHHHhhccccCCceEEEEEeCcEE--EEEEEecCCCCcEEEEecCCCCceEEEeccccccCceEEEE-ecCCeEEEcc
Confidence 66777743 23455555556655 456666 579999999874 3343 2234555 6999999999
Q ss_pred EEEeeccCCCccccCCCCccccCCCCCCCcEEee-CCceEEEEeeEEecCCC-----------------CeeeeeeCCce
Q 018853 188 HIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTD-----------------GLIDAIMGSTG 249 (349)
Q Consensus 188 ~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~-gs~nVWIDHcS~s~~~D-----------------glid~~~gs~~ 249 (349)
.|++..+... .+. ...++-|+-+. .++++-+.+|.|....| |.+|.+-|.-.
T Consensus 123 T~~Nt~~~~~---------~~~-~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~~~gRqyf~~C~IeG~VDFIFG~g~ 192 (331)
T PLN02497 123 TFANSYNFPS---------KGN-KNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWDSDGRHYFKRCTIQGAVDFIFGSGQ 192 (331)
T ss_pred EEEeCCCCcc---------ccC-CCCCcceEEEEecCCcEEEEeeEEeccccceeeCCCcEEEEeCEEEecccEEccCce
Confidence 9998642100 000 01122355444 57889999999987665 44555556666
Q ss_pred EEEEcceec
Q 018853 250 ITISNNYFS 258 (349)
Q Consensus 250 ITISnn~f~ 258 (349)
.-+++|.|.
T Consensus 193 a~Fe~C~I~ 201 (331)
T PLN02497 193 SIYESCVIQ 201 (331)
T ss_pred EEEEccEEE
Confidence 677777775
No 48
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=95.77 E-value=0.18 Score=53.02 Aligned_cols=116 Identities=16% Similarity=0.228 Sum_probs=80.1
Q ss_pred hHHHHhhc----CCCeEEEEecCeEEEecceEEe---cCCceEEeeCce-EEEEec------------cEEEEeeeccEE
Q 018853 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGAN-VEITGN------------GCLTLQYVSHVI 183 (349)
Q Consensus 124 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~-i~I~G~------------g~l~i~~a~NVI 183 (349)
|+.+||.+ +..+++||=..|+-+ +.|.| .+|+||.|.|.. ..|++. +.+.+ .+++++
T Consensus 211 TIq~AI~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~g~~T~~SATv~v-~g~gF~ 287 (509)
T PLN02488 211 TVNAAIAAAPEHSRKRFVIYIKTGVYD--EIVRIGSTKPNLTLIGDGQDSTIITGNLSASNGKRTFYTATVAS-NGDGFI 287 (509)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCeeE--EEEEecCCCccEEEEecCCCceEEEEcccccCCCCceeeEEEEE-EcCCeE
Confidence 78888854 233666666667654 56666 479999999985 344431 12333 589999
Q ss_pred EEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEee-CCceEEEEeeEEecCCC-----------------Ceeeeee
Q 018853 184 IHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTD-----------------GLIDAIM 245 (349)
Q Consensus 184 IrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~-gs~nVWIDHcS~s~~~D-----------------glid~~~ 245 (349)
.+||.|++... ...+-|+-+. .++..-+.+|+|....| |.+|.+-
T Consensus 288 A~nitf~Ntag-----------------~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~~RqyyrdC~I~GtVDFIF 350 (509)
T PLN02488 288 GIDMCFRNTAG-----------------PAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHRDRQFYRECFITGTVDFIC 350 (509)
T ss_pred EEeeEEEECCC-----------------CCCCceEEEEecCCcEEEEcceeeccCcceeeCCCCEEEEeeEEeeccceEe
Confidence 99999998531 1123455555 57888899999887544 6677777
Q ss_pred CCceEEEEcceecc
Q 018853 246 GSTGITISNNYFSH 259 (349)
Q Consensus 246 gs~~ITISnn~f~~ 259 (349)
|.-.+-+++|.|..
T Consensus 351 G~a~avFq~C~I~s 364 (509)
T PLN02488 351 GNAAAVFQFCQIVA 364 (509)
T ss_pred cceEEEEEccEEEE
Confidence 78888899998874
No 49
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=95.76 E-value=0.13 Score=54.34 Aligned_cols=100 Identities=20% Similarity=0.277 Sum_probs=70.0
Q ss_pred EEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEeeCCceEEEEeeEEecCCCCeeeeee--------
Q 018853 174 LTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIM-------- 245 (349)
Q Consensus 174 l~i~~a~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~gs~nVWIDHcS~s~~~Dglid~~~-------- 245 (349)
+-.+.++|+.++||+|..-. ....||+.+..++||-|+-|.|+.+.|- +-++.
T Consensus 264 ~h~~~~~nl~~~nl~I~~~~------------------~~NtDG~d~~sc~NvlI~~~~fdtgDD~-I~iksg~~~~~~~ 324 (542)
T COG5434 264 VHPVDCDNLTFRNLTIDANR------------------FDNTDGFDPGSCSNVLIEGCRFDTGDDC-IAIKSGAGLDGKK 324 (542)
T ss_pred EeeecccCceecceEEECCC------------------CCCCCccccccceeEEEeccEEecCCce-EEeecccCCcccc
Confidence 44568999999999998421 1156999999999999999999996553 22222
Q ss_pred ---CCceEEEEcceeccCCceeeccCCCCccCCCC-ceEEEEeeEecCCCcCcCccc
Q 018853 246 ---GSTGITISNNYFSHHNEVMLLGHNDKYALDMG-MQVTIAFNHFGVALVQRMPRC 298 (349)
Q Consensus 246 ---gs~~ITISnn~f~~h~k~~L~G~sd~~~~d~g-~~VTi~hN~F~~n~~~R~Pr~ 298 (349)
.+.+|+|++|+|..-..+..+|+. .+.+ ..|++-.|.|- + ..|.=|+
T Consensus 325 ~~~~~~~i~i~~c~~~~ghG~~v~Gse----~~ggv~ni~ved~~~~-~-~d~GLRi 375 (542)
T COG5434 325 GYGPSRNIVIRNCYFSSGHGGLVLGSE----MGGGVQNITVEDCVMD-N-TDRGLRI 375 (542)
T ss_pred cccccccEEEecceecccccceEeeee----cCCceeEEEEEeeeec-c-Ccceeee
Confidence 356899999999964444555543 2334 46888889884 3 3455444
No 50
>PLN02634 probable pectinesterase
Probab=95.76 E-value=0.24 Score=49.94 Aligned_cols=121 Identities=17% Similarity=0.283 Sum_probs=75.7
Q ss_pred hHHHHhhc----CCCeEEEEecCeEEEecceEEe---cCCceEEeeCceEEEE-e------------------ccEEEEe
Q 018853 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVEIT-G------------------NGCLTLQ 177 (349)
Q Consensus 124 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~i~I~-G------------------~g~l~i~ 177 (349)
|+.+||.+ +..+++++=..|+-+ +.|.| .+|+||.|.|...+|. . .+.+++
T Consensus 70 TIQaAIda~P~~~~~r~vI~Ik~GvY~--EkV~Ip~~k~~ItL~G~g~~~TiIt~~~~a~~~~~~g~~~~T~~SaTv~V- 146 (359)
T PLN02634 70 SVQDAVDSVPKNNTMSVTIKINAGFYR--EKVVVPATKPYITFQGAGRDVTAIEWHDRASDRGANGQQLRTYQTASVTV- 146 (359)
T ss_pred CHHHHHhhCcccCCccEEEEEeCceEE--EEEEEcCCCCeEEEEecCCCceEEEecccccccCCCCcccccccceEEEE-
Confidence 56777743 223555555566643 56666 5799999998764332 1 113444
Q ss_pred eeccEEEEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEee-CCceEEEEeeEEecCCC-----------------C
Q 018853 178 YVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTD-----------------G 239 (349)
Q Consensus 178 ~a~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~-gs~nVWIDHcS~s~~~D-----------------g 239 (349)
.+++++.+||.|++..+... + | ..++-|+-+. .++++-+.+|.|....| |
T Consensus 147 ~a~~F~a~niTf~Nta~~~~------~---g---~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~~~~gR~yf~~CyIeG 214 (359)
T PLN02634 147 YANYFTARNISFKNTAPAPM------P---G---MQGWQAVAFRISGDKAFFFGCGFYGAQDTLCDDAGRHYFKECYIEG 214 (359)
T ss_pred ECCCeEEEeCeEEeCCccCC------C---C---CCCCceEEEEecCCcEEEEEeEEecccceeeeCCCCEEEEeeEEcc
Confidence 58999999999998653110 0 1 1223444443 47789999999887655 5
Q ss_pred eeeeeeCCceEEEEcceecc
Q 018853 240 LIDAIMGSTGITISNNYFSH 259 (349)
Q Consensus 240 lid~~~gs~~ITISnn~f~~ 259 (349)
.+|.+-|.-..-+.+|.|..
T Consensus 215 ~VDFIFG~g~a~Fe~C~I~s 234 (359)
T PLN02634 215 SIDFIFGNGRSMYKDCELHS 234 (359)
T ss_pred cccEEcCCceEEEeccEEEE
Confidence 55666666666677777763
No 51
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=95.75 E-value=0.18 Score=53.79 Aligned_cols=116 Identities=19% Similarity=0.331 Sum_probs=78.6
Q ss_pred hHHHHhhcC-------CCeEEEEecCeEEEecceEEe---cCCceEEeeCce-EEEEec------------cEEEEeeec
Q 018853 124 TLRHAVIQT-------EPIWITFASNMLIKLKHELII---NSYKTIDGRGAN-VEITGN------------GCLTLQYVS 180 (349)
Q Consensus 124 tLr~av~~~-------~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~-i~I~G~------------g~l~i~~a~ 180 (349)
|..+||.+- ..+++|+=..|+-+ +.|.| .+|+||.|.|.. ..|.+. +.+.+ .++
T Consensus 264 TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SaT~~v-~~~ 340 (566)
T PLN02713 264 TINDAVAAAPNNTDGSNGYFVIYVTAGVYE--EYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNSATFAV-VGQ 340 (566)
T ss_pred CHHHHHHhhhcccCCCCceEEEEEcCcEEE--EEEEecCCCceEEEEecCCCCcEEEcCCcccCCCccccceeEEE-ECC
Confidence 788888541 22566666677664 55666 578999999875 344421 23444 589
Q ss_pred cEEEEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEee-CCceEEEEeeEEecCCC-----------------Ceee
Q 018853 181 HVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTD-----------------GLID 242 (349)
Q Consensus 181 NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~-gs~nVWIDHcS~s~~~D-----------------glid 242 (349)
+++.+||.|++..+ . ..+-|+-+. .++..-+.+|.|....| |.+|
T Consensus 341 ~F~a~nitf~Ntag--------------~---~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVD 403 (566)
T PLN02713 341 NFVAVNITFRNTAG--------------P---AKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVD 403 (566)
T ss_pred CeEEEeeEEEeCCC--------------C---CCCceEEEEecCCcEEEEeeeeccCCcceEECCCCEEEEeeEEecccc
Confidence 99999999998531 0 122344444 57788888888877554 6667
Q ss_pred eeeCCceEEEEcceecc
Q 018853 243 AIMGSTGITISNNYFSH 259 (349)
Q Consensus 243 ~~~gs~~ITISnn~f~~ 259 (349)
.+-|.-.+-+++|.|..
T Consensus 404 FIFG~a~avfq~C~i~~ 420 (566)
T PLN02713 404 FIFGNAAVVFQNCNLYP 420 (566)
T ss_pred eecccceEEEeccEEEE
Confidence 77778888888998864
No 52
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=95.73 E-value=0.17 Score=53.61 Aligned_cols=119 Identities=18% Similarity=0.275 Sum_probs=81.0
Q ss_pred CCh---hHHHHhhc-C-----CCeEEEEecCeEEEecceEEe---cCCceEEeeCce-EEEEec------------cEEE
Q 018853 121 TPG---TLRHAVIQ-T-----EPIWITFASNMLIKLKHELII---NSYKTIDGRGAN-VEITGN------------GCLT 175 (349)
Q Consensus 121 ~pG---tLr~av~~-~-----~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~-i~I~G~------------g~l~ 175 (349)
|.| |..+||.+ + ..+++|+=..|+-+ +.|.| .+|+|+.|.|.. ..|++. +.+.
T Consensus 231 GsG~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TvIt~~~~~~~~~~T~~SaT~~ 308 (539)
T PLN02995 231 GSGHFNTVQAAIDVAGRRKVTSGRFVIYVKRGIYQ--ENINVRLNNDDIMLVGDGMRSTIITGGRSVKGGYTTYNSATAG 308 (539)
T ss_pred CCCCccCHHHHHHhcccccCCCceEEEEEeCCEeE--EEEEecCCCCcEEEEEcCCCCeEEEeCCccCCCCcccceEEEE
Confidence 556 88889864 1 23566666667654 45666 479999999875 445431 1233
Q ss_pred EeeeccEEEEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEee-CCceEEEEeeEEecCCC----------------
Q 018853 176 LQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTD---------------- 238 (349)
Q Consensus 176 i~~a~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~-gs~nVWIDHcS~s~~~D---------------- 238 (349)
+ .+++++.+||.|++..+ . ..+-|+-+. .++...+.+|.|....|
T Consensus 309 v-~~~~F~a~nitf~Ntag--------------~---~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I 370 (539)
T PLN02995 309 I-EGLHFIAKGITFRNTAG--------------P---AKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHSQRQFYRECYI 370 (539)
T ss_pred E-ECCCeEEEeeEEEeCCC--------------C---CCCceEEEEEcCCceeEEcceEecccchhccCCCceEEEeeEE
Confidence 4 58999999999998531 1 123455554 57899999999987655
Q ss_pred -CeeeeeeCCceEEEEcceecc
Q 018853 239 -GLIDAIMGSTGITISNNYFSH 259 (349)
Q Consensus 239 -glid~~~gs~~ITISnn~f~~ 259 (349)
|.+|.+-|.-..-+++|.|..
T Consensus 371 ~GtVDFIFG~a~avf~~C~i~~ 392 (539)
T PLN02995 371 YGTVDFIFGNAAAVFQNCIILP 392 (539)
T ss_pred eeccceEecccceEEeccEEEE
Confidence 666777777777788888864
No 53
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=95.69 E-value=0.19 Score=53.00 Aligned_cols=116 Identities=16% Similarity=0.249 Sum_probs=78.2
Q ss_pred hHHHHhhc----CCCeEEEEecCeEEEecceEEe---cCCceEEeeCce-EEEEe------------ccEEEEeeeccEE
Q 018853 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGAN-VEITG------------NGCLTLQYVSHVI 183 (349)
Q Consensus 124 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~-i~I~G------------~g~l~i~~a~NVI 183 (349)
|+.+||.+ +..+++||=..|+-+ +.|.| .+|+||.|.|.. ..|++ .+.+.+ .+++++
T Consensus 220 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v-~~~~F~ 296 (520)
T PLN02201 220 TIMDAVLAAPDYSTKRYVIYIKKGVYL--ENVEIKKKKWNIMMVGDGIDATVITGNRSFIDGWTTFRSATFAV-SGRGFI 296 (520)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCceeE--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcccceEEEEE-ECCCeE
Confidence 88888854 223566666667654 55666 468999999875 34432 113444 589999
Q ss_pred EEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEee-CCceEEEEeeEEecCCC-----------------Ceeeeee
Q 018853 184 IHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTD-----------------GLIDAIM 245 (349)
Q Consensus 184 IrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~-gs~nVWIDHcS~s~~~D-----------------glid~~~ 245 (349)
.+||.|++..+. ..+-|+-+. .++..-+.+|.|....| |.+|.+-
T Consensus 297 a~nitf~Ntag~-----------------~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIF 359 (520)
T PLN02201 297 ARDITFQNTAGP-----------------EKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHTMRQFYRECRITGTVDFIF 359 (520)
T ss_pred EEeeEEEECCCC-----------------CCCceEEEEEcCCcEEEEeeeeeccCCeeEeCCCCEEEEeeEEeecccEEe
Confidence 999999986321 122344444 47888888888877554 6677777
Q ss_pred CCceEEEEcceecc
Q 018853 246 GSTGITISNNYFSH 259 (349)
Q Consensus 246 gs~~ITISnn~f~~ 259 (349)
|.-..-+++|.|..
T Consensus 360 G~a~avf~~C~i~~ 373 (520)
T PLN02201 360 GDATAVFQNCQILA 373 (520)
T ss_pred cCceEEEEccEEEE
Confidence 77788888998864
No 54
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=95.64 E-value=0.21 Score=52.93 Aligned_cols=116 Identities=16% Similarity=0.267 Sum_probs=81.4
Q ss_pred hHHHHhhc---CC----CeEEEEecCeEEEecceEEe---cCCceEEeeCce-EEEEec------------cEEEEeeec
Q 018853 124 TLRHAVIQ---TE----PIWITFASNMLIKLKHELII---NSYKTIDGRGAN-VEITGN------------GCLTLQYVS 180 (349)
Q Consensus 124 tLr~av~~---~~----P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~-i~I~G~------------g~l~i~~a~ 180 (349)
|+.+||.+ .. -|+|||=..|+-+ +.|.| .+|+||.|.|.+ ..|++. +.+.+ .++
T Consensus 237 TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y~--E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~dg~~T~~saT~~v-~~~ 313 (538)
T PLN03043 237 TITDAIAAAPNNSKPEDGYFVIYAREGYYE--EYVVVPKNKKNIMLIGDGINKTIITGNHSVVDGWTTFNSSTFAV-SGE 313 (538)
T ss_pred CHHHHHHhccccCCCCcceEEEEEcCeeeE--EEEEeCCCCCcEEEEecCCCCeEEEeCCccCCCCccccceEEEE-ECC
Confidence 88888853 11 2677777778764 55666 579999999875 444431 23444 689
Q ss_pred cEEEEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEee-CCceEEEEeeEEecCCC-----------------Ceee
Q 018853 181 HVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTD-----------------GLID 242 (349)
Q Consensus 181 NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~-gs~nVWIDHcS~s~~~D-----------------glid 242 (349)
+++.+||.|++... . ...-|+-+. .++..-+.+|+|....| |.+|
T Consensus 314 ~F~a~~it~~Ntag--------------~---~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~rq~y~~c~I~GtVD 376 (538)
T PLN03043 314 RFVAVDVTFRNTAG--------------P---EKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVD 376 (538)
T ss_pred CEEEEeeEEEECCC--------------C---CCCceEEEEEcCCcEEEEeeEEeccCcccccCCCcEEEEeeEEeeccc
Confidence 99999999998531 1 123455554 57888899999987544 6777
Q ss_pred eeeCCceEEEEcceecc
Q 018853 243 AIMGSTGITISNNYFSH 259 (349)
Q Consensus 243 ~~~gs~~ITISnn~f~~ 259 (349)
.+-|.-.+-+++|.|.-
T Consensus 377 FIFG~a~avfq~c~i~~ 393 (538)
T PLN03043 377 FIFGNAAAIFQNCNLYA 393 (538)
T ss_pred eEeecceeeeeccEEEE
Confidence 77788888999999964
No 55
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=95.56 E-value=0.22 Score=48.89 Aligned_cols=195 Identities=12% Similarity=0.155 Sum_probs=95.4
Q ss_pred hHHHHhhc----CCCeEEEEecCeEEEecceEEec---CCceEEeeCce-EEEEec------------cEEEEeeeccEE
Q 018853 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELIIN---SYKTIDGRGAN-VEITGN------------GCLTLQYVSHVI 183 (349)
Q Consensus 124 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i~---snkTI~G~ga~-i~I~G~------------g~l~i~~a~NVI 183 (349)
|+.+||.. ...+++||=..|+-+ +.|.|. +++||.|.|.. ..|.+. +.+.+ .+++++
T Consensus 14 TIq~Aida~p~~~~~~~~I~I~~G~Y~--E~V~i~~~k~~v~l~G~~~~~tiI~~~~~~~~~~~t~~saT~~v-~a~~f~ 90 (298)
T PF01095_consen 14 TIQAAIDAAPDNNTSRYTIFIKPGTYR--EKVTIPRSKPNVTLIGEGRDKTIITGNDNAADGGGTFRSATFSV-NADDFT 90 (298)
T ss_dssp SHHHHHHHS-SSSSS-EEEEE-SEEEE----EEE-STSTTEEEEES-TTTEEEEE---TTTB-HCGGC-SEEE--STT-E
T ss_pred CHHHHHHhchhcCCceEEEEEeCeeEc--cccEeccccceEEEEecCCCceEEEEeccccccccccccccccc-ccccee
Confidence 78888864 234677777778665 567773 69999999874 445542 14555 589999
Q ss_pred EEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEeeCCceEEEEeeEEecCCCCee-----------------eeeeC
Q 018853 184 IHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLI-----------------DAIMG 246 (349)
Q Consensus 184 IrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~gs~nVWIDHcS~s~~~Dgli-----------------d~~~g 246 (349)
.+||.|++.. |. .....-|+.+ .++++.+.+|.|....|=|+ |.+.|
T Consensus 91 ~~nit~~Nt~--------------g~-~~~qAvAl~~-~~d~~~f~~c~~~g~QDTL~~~~~r~y~~~c~IeG~vDFIfG 154 (298)
T PF01095_consen 91 AENITFENTA--------------GP-SGGQAVALRV-SGDRAAFYNCRFLGYQDTLYANGGRQYFKNCYIEGNVDFIFG 154 (298)
T ss_dssp EEEEEEEEHC--------------SG-SG----SEEE-T-TSEEEEEEEEE-STT-EEE-SSEEEEES-EEEESEEEEEE
T ss_pred eeeeEEecCC--------------CC-cccceeeeee-cCCcEEEEEeEEccccceeeeccceeEEEeeEEEecCcEEEC
Confidence 9999999853 11 0122346665 46889999999988777544 44434
Q ss_pred CceEEEEcceeccCC-----ceeeccCCCCccCCCCceEEEEeeEecCCCcCcC------------cccCCCeEEEEcce
Q 018853 247 STGITISNNYFSHHN-----EVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRM------------PRCRRGYIHVVNND 309 (349)
Q Consensus 247 s~~ITISnn~f~~h~-----k~~L~G~sd~~~~d~g~~VTi~hN~F~~n~~~R~------------Pr~R~G~~HvvNN~ 309 (349)
.-..-+.+|.|..-. ...+--++.. ......-..|.+|.+.. ...=. |--.+..+=++|.+
T Consensus 155 ~~~a~f~~c~i~~~~~~~~~~~~ItA~~r~-~~~~~~G~vF~~c~i~~-~~~~~~~~~~~~~yLGRpW~~~s~vvf~~t~ 232 (298)
T PF01095_consen 155 NGTAVFENCTIHSRRPGGGQGGYITAQGRT-SPSQKSGFVFDNCTITG-DSGVSPSYSDGSVYLGRPWGPYSRVVFINTY 232 (298)
T ss_dssp SSEEEEES-EEEE--SSTSSTEEEEEE----CTTSS-EEEEES-EEEE-STTTCGGCCCSTEEEE--SSEETEEEEES-E
T ss_pred CeeEEeeeeEEEEeccccccceeEEeCCcc-ccCCCeEEEEEEeEEec-CccccccccceeEEecCcccceeeEEEEccc
Confidence 434444455444210 1111111100 01112345667777742 11100 11124577788888
Q ss_pred EeC------CcceEEecCCCceEEEEcceEeCCCCC
Q 018853 310 FTS------WEMYAIGGSANPTINSQGNRYTAPPDD 339 (349)
Q Consensus 310 ~~~------~~~yaigg~~~~~i~~egN~F~~~~~~ 339 (349)
+.. |....-......-.+.|-+-+-++.++
T Consensus 233 m~~~I~p~GW~~w~~~~~~~~~~f~Ey~~~GpGa~~ 268 (298)
T PF01095_consen 233 MDDHINPEGWTPWSGDPNTDTVYFAEYNNTGPGANT 268 (298)
T ss_dssp E-TTEETCES--EEETTTTTCEEEEEES-BCTTC-S
T ss_pred cCCeeeccCcccccccccccceEEEEECCcCCCCCc
Confidence 864 443333333444557787777666554
No 56
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=95.51 E-value=0.056 Score=48.51 Aligned_cols=122 Identities=28% Similarity=0.381 Sum_probs=65.8
Q ss_pred CceEEeeCceEEEEeccEEEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEeeC-CceEEEEeeEEe
Q 018853 156 YKTIDGRGANVEITGNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFG-SQKIWVDHCSLS 234 (349)
Q Consensus 156 nkTI~G~ga~i~I~G~g~l~i~~a~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~g-s~nVWIDHcS~s 234 (349)
++||+|.+....=...+ +.+..+.|+.|+|++++++...+ ..+. ....+.........++.+.+ +.+++++.|.+.
T Consensus 98 nl~i~~~~~~~~~~~~~-i~~~~~~~~~i~nv~~~~~~~~~-i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
T PF12708_consen 98 NLTIDGNGIDPNNNNNG-IRFNSSQNVSISNVRIENSGGDG-IYFN-TGTDYRIIGSTHVSGIFIDNGSNNVIVNNCIFN 174 (225)
T ss_dssp EEEEEETCGCE-SCEEE-EEETTEEEEEEEEEEEES-SS-S-EEEE-CCEECEEECCEEEEEEEEESCEEEEEEECEEEE
T ss_pred eeEEEcccccCCCCceE-EEEEeCCeEEEEeEEEEccCccE-EEEE-ccccCcEeecccceeeeeccceeEEEECCcccc
Confidence 47777775432100222 77777999999999999753111 0010 00000000000011455554 344555777777
Q ss_pred cCCCCeeeeeeCCceEEEEcceecc-CCceeeccCCCCccCCCCceEEEEeeEecCCCc
Q 018853 235 YCTDGLIDAIMGSTGITISNNYFSH-HNEVMLLGHNDKYALDMGMQVTIAFNHFGVALV 292 (349)
Q Consensus 235 ~~~Dglid~~~gs~~ITISnn~f~~-h~k~~L~G~sd~~~~d~g~~VTi~hN~F~~n~~ 292 (349)
.+.+| + ..+..+++++||.|.. ...+..+-.. -++++.+|.|. +|.
T Consensus 175 ~~~~g-~--~~~~~~~~i~n~~~~~~~~~gi~i~~~--------~~~~i~n~~i~-~~~ 221 (225)
T PF12708_consen 175 GGDNG-I--ILGNNNITISNNTFEGNCGNGINIEGG--------SNIIISNNTIE-NCD 221 (225)
T ss_dssp SSSCS-E--ECEEEEEEEECEEEESSSSESEEEEEC--------SEEEEEEEEEE-SSS
T ss_pred CCCce-e--EeecceEEEEeEEECCccceeEEEECC--------eEEEEEeEEEE-CCc
Confidence 78888 2 3445899999999986 4333323211 25888888884 454
No 57
>PLN02671 pectinesterase
Probab=95.51 E-value=0.38 Score=48.59 Aligned_cols=169 Identities=9% Similarity=0.075 Sum_probs=92.7
Q ss_pred hHHHHhhc----CCCeEEEEecCeEEEecceEEe---cCCceEEeeCc---eEEEEe------------------ccEEE
Q 018853 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGA---NVEITG------------------NGCLT 175 (349)
Q Consensus 124 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga---~i~I~G------------------~g~l~ 175 (349)
|+.+||.+ ...+++||=..|+-+ +.|.| .+++||.|.|. ...|.. .+.++
T Consensus 73 TIQ~AIdavP~~~~~~~~I~Ik~GvY~--EkV~I~~~k~~Itl~G~g~~~~~TvIt~~~~a~~~~~~g~~~gT~~SaTv~ 150 (359)
T PLN02671 73 TVQGAVDMVPDYNSQRVKIYILPGIYR--EKVLVPKSKPYISFIGNESRAGDTVISWNDKASDLDSNGFELGTYRTASVT 150 (359)
T ss_pred CHHHHHHhchhcCCccEEEEEeCceEE--EEEEECCCCCeEEEEecCCCCCCEEEEcCCcccccccCCccccceeeEEEE
Confidence 67778743 223455555566543 66677 57999999874 344552 11344
Q ss_pred EeeeccEEEEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEee-CCceEEEEeeEEecCCCC---------------
Q 018853 176 LQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDG--------------- 239 (349)
Q Consensus 176 i~~a~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~-gs~nVWIDHcS~s~~~Dg--------------- 239 (349)
+ .+++++.+||.|++..+.+. | ..++-|+-+. .++++-+.+|.|....|=
T Consensus 151 v-~a~~F~a~nitfeNt~~~~~----------g---~~~~QAVALrv~gDra~f~~c~f~G~QDTLy~~~gR~yf~~CyI 216 (359)
T PLN02671 151 I-ESDYFCATGITFENTVVAEP----------G---GQGMQAVALRISGDKAFFYKVRVLGAQDTLLDETGSHYFYQCYI 216 (359)
T ss_pred E-ECCceEEEeeEEEcCCCCCC----------C---CCCccEEEEEEcCccEEEEcceEeccccccEeCCCcEEEEecEE
Confidence 4 58999999999998632110 0 1122344433 478899999999876654
Q ss_pred --eeeeeeCCceEEEEcceeccC--CceeeccCCCCccCCCCceEEEEeeEecCCC----cCcCcccCCCeEEEEcceEe
Q 018853 240 --LIDAIMGSTGITISNNYFSHH--NEVMLLGHNDKYALDMGMQVTIAFNHFGVAL----VQRMPRCRRGYIHVVNNDFT 311 (349)
Q Consensus 240 --lid~~~gs~~ITISnn~f~~h--~k~~L~G~sd~~~~d~g~~VTi~hN~F~~n~----~~R~Pr~R~G~~HvvNN~~~ 311 (349)
.+|.+-|.-..-+.+|.|..- ..+.+--++-.. .....-..|++|.+. +. -.|-.+ .+..+=+.|.++.
T Consensus 217 eG~VDFIFG~g~A~Fe~C~I~s~~~~~G~ITA~~r~~-~~~~~GfvF~~C~it-g~g~vyLGRPW~-~yarvVf~~t~m~ 293 (359)
T PLN02671 217 QGSVDFIFGNAKSLYQDCVIQSTAKRSGAIAAHHRDS-PTEDTGFSFVNCVIN-GTGKIYLGRAWG-NYSRTVYSNCFIA 293 (359)
T ss_pred EEeccEEecceeEEEeccEEEEecCCCeEEEeeccCC-CCCCccEEEEccEEc-cCccEEEeCCCC-CCceEEEEecccC
Confidence 445555555566667766531 112222111000 011123556666653 11 123322 3566777777765
No 58
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=95.46 E-value=0.24 Score=52.75 Aligned_cols=115 Identities=12% Similarity=0.252 Sum_probs=78.8
Q ss_pred hHHHHhhc----CCCeEEEEecCeEEEecceEEe---cCCceEEeeCce-EEEEe-------c-----cEEEEeeeccEE
Q 018853 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGAN-VEITG-------N-----GCLTLQYVSHVI 183 (349)
Q Consensus 124 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~-i~I~G-------~-----g~l~i~~a~NVI 183 (349)
|..+||.+ +..++|||=..|+-+ +.+.| .+|+||.|.|.. ..|++ . +.+.+ .+++++
T Consensus 272 tI~~Av~a~p~~~~~~~vI~ik~GvY~--E~V~i~~~k~~i~~~G~g~~~tiIt~~~~~~dg~~t~~saT~~v-~~~~f~ 348 (565)
T PLN02468 272 TISEALKDVPEKSEKRTIIYVKKGVYF--ENVRVEKKKWNVVMVGDGMSKTIVSGSLNFVDGTPTFSTATFAV-FGKGFM 348 (565)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCceE--EEEEecCCCCeEEEEecCCCCCEEEeCCccCCCCCccceeeeeE-ECCCeE
Confidence 78888854 233566666667654 55666 468999999875 33432 1 13334 589999
Q ss_pred EEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEee-CCceEEEEeeEEecCCC-----------------Ceeeeee
Q 018853 184 IHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTD-----------------GLIDAIM 245 (349)
Q Consensus 184 IrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~-gs~nVWIDHcS~s~~~D-----------------glid~~~ 245 (349)
.+||.|++... . .+.-|+-+. .++.+-+.+|+|....| |.+|.+-
T Consensus 349 a~~itf~Ntag--------------~---~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~rq~y~~C~I~GtvDFIF 411 (565)
T PLN02468 349 ARDMGFRNTAG--------------P---IKHQAVALMSSADLSVFYRCTMDAFQDTLYAHAQRQFYRECNIYGTVDFIF 411 (565)
T ss_pred EEEEEEEeCCC--------------C---CCCceEEEEEcCCcEEEEEeEEEeccchhccCCCceEEEeeEEecccceee
Confidence 99999998531 1 123455544 58889999999987544 6778888
Q ss_pred CCceEEEEcceec
Q 018853 246 GSTGITISNNYFS 258 (349)
Q Consensus 246 gs~~ITISnn~f~ 258 (349)
|.-.+-++||.|.
T Consensus 412 G~a~avfq~c~i~ 424 (565)
T PLN02468 412 GNSAVVFQNCNIL 424 (565)
T ss_pred ccceEEEeccEEE
Confidence 8888899999986
No 59
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=95.42 E-value=0.27 Score=52.62 Aligned_cols=119 Identities=14% Similarity=0.237 Sum_probs=81.6
Q ss_pred CCh---hHHHHhhc----CCCeEEEEecCeEEEecceEEe---cCCceEEeeCce-EEEEec------------cEEEEe
Q 018853 121 TPG---TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGAN-VEITGN------------GCLTLQ 177 (349)
Q Consensus 121 ~pG---tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~-i~I~G~------------g~l~i~ 177 (349)
|.| |+.+||.+ ...++|||=..|+-+ +.+.| .+|+||.|.|.. ..|++. +.+.+
T Consensus 283 GsG~f~TI~~Av~a~p~~~~~r~vI~ik~GvY~--E~V~i~~~k~ni~l~Gdg~~~TiIt~~~~~~~g~~t~~sat~~v- 359 (587)
T PLN02313 283 GSGDFTTVAAAVAAAPEKSNKRFVIHIKAGVYR--ENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGSTTFHSATVAA- 359 (587)
T ss_pred CCCCCccHHHHHHhccccCCceEEEEEeCceeE--EEEEeCCCCCeEEEEecCCCccEEEeCCcccCCCCceeeEEEEE-
Confidence 555 78888854 234667776677654 55666 469999999885 344431 13333
Q ss_pred eeccEEEEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEee-CCceEEEEeeEEecCC-----------------CC
Q 018853 178 YVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCT-----------------DG 239 (349)
Q Consensus 178 ~a~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~-gs~nVWIDHcS~s~~~-----------------Dg 239 (349)
.+++++.+||.|++... . ...-|+-+. +++..-+-+|+|.... .|
T Consensus 360 ~~~~F~a~~itf~Ntag--------------~---~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~rq~y~~c~I~G 422 (587)
T PLN02313 360 VGERFLARDITFQNTAG--------------P---SKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITG 422 (587)
T ss_pred ECCCeEEEeeEEEeCCC--------------C---CCCceEEEEecCCcEEEEeeeEecccchhccCCCcEEEEeeEEee
Confidence 58999999999998531 1 122344444 5788889999988654 47
Q ss_pred eeeeeeCCceEEEEcceecc
Q 018853 240 LIDAIMGSTGITISNNYFSH 259 (349)
Q Consensus 240 lid~~~gs~~ITISnn~f~~ 259 (349)
.+|.+-|.-.+-+++|.|.-
T Consensus 423 tvDFIFG~a~avfq~c~i~~ 442 (587)
T PLN02313 423 TVDFIFGNAAAVLQDCDINA 442 (587)
T ss_pred ccceeccceeEEEEccEEEE
Confidence 77888888888999999974
No 60
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=95.41 E-value=0.29 Score=52.23 Aligned_cols=119 Identities=15% Similarity=0.281 Sum_probs=81.4
Q ss_pred CCh---hHHHHhhc----CCCeEEEEecCeEEEecceEEe---cCCceEEeeCce-EEEEec-------------cEEEE
Q 018853 121 TPG---TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGAN-VEITGN-------------GCLTL 176 (349)
Q Consensus 121 ~pG---tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~-i~I~G~-------------g~l~i 176 (349)
|.| |+.+||.+ +..+++|+=..|+-+ +.+.| .+|+||.|.|.. ..|++. +.+.+
T Consensus 267 GsG~f~TIq~Av~a~p~~~~~r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~~T~~saT~~v 344 (572)
T PLN02990 267 GSGQYKTINEALNAVPKANQKPFVIYIKQGVYN--EKVDVTKKMTHVTFIGDGPTKTKITGSLNFYIGKVKTYLTATVAI 344 (572)
T ss_pred CCCCCcCHHHHHhhCcccCCceEEEEEeCceeE--EEEEecCCCCcEEEEecCCCceEEEeccccCCCCccceeeeEEEE
Confidence 555 88888854 223566666667554 55666 479999999875 444421 12334
Q ss_pred eeeccEEEEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEee-CCceEEEEeeEEecCCC-----------------
Q 018853 177 QYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTD----------------- 238 (349)
Q Consensus 177 ~~a~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~-gs~nVWIDHcS~s~~~D----------------- 238 (349)
.+++++.+||.|++..+ . .+.-|+-+. .++..-+.+|.|....|
T Consensus 345 -~~~~F~a~nitf~Ntag--------------~---~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~ 406 (572)
T PLN02990 345 -NGDHFTAKNIGFENTAG--------------P---EGHQAVALRVSADYAVFYNCQIDGYQDTLYVHSHRQFFRDCTVS 406 (572)
T ss_pred -EcCCEEEEeeEEEeCCC--------------C---CCCceEEEEEcCCcEEEEeeeEecccchhccCCCcEEEEeeEEe
Confidence 58999999999998531 1 123455554 57888999999886544
Q ss_pred CeeeeeeCCceEEEEcceecc
Q 018853 239 GLIDAIMGSTGITISNNYFSH 259 (349)
Q Consensus 239 glid~~~gs~~ITISnn~f~~ 259 (349)
|.+|.+-|.-..-+++|.|.-
T Consensus 407 GtVDFIFG~a~avf~~C~i~~ 427 (572)
T PLN02990 407 GTVDFIFGDAKVVLQNCNIVV 427 (572)
T ss_pred cccceEccCceEEEEccEEEE
Confidence 677777788888899999863
No 61
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=95.40 E-value=0.22 Score=52.71 Aligned_cols=166 Identities=16% Similarity=0.218 Sum_probs=98.3
Q ss_pred hHHHHhhc----CCCeEEEEecCeEEEecceEEe---cCCceEEeeCce-EEEEec------------cEEEEeeeccEE
Q 018853 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGAN-VEITGN------------GCLTLQYVSHVI 183 (349)
Q Consensus 124 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~-i~I~G~------------g~l~i~~a~NVI 183 (349)
|+.+||.+ +..++|||=..|+-+ +.+.| .+|+||.|.|.. ..|.+. +.+.+ .+++++
T Consensus 246 TIq~Av~a~p~~~~~r~vI~Vk~GvY~--E~V~I~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~T~~saT~~v-~~~~F~ 322 (537)
T PLN02506 246 TITEAINEAPNHSNRRYIIYVKKGVYK--ENIDMKKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTFRTATVAV-SGRGFI 322 (537)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCeee--EEEeccCCCceEEEEEcCCCCeEEEeCccccCCCCcccceEEEE-EcCCeE
Confidence 78888854 234667776677654 45556 479999999875 344431 12333 689999
Q ss_pred EEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEee-CCceEEEEeeEEecCCC-----------------Ceeeeee
Q 018853 184 IHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTD-----------------GLIDAIM 245 (349)
Q Consensus 184 IrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~-gs~nVWIDHcS~s~~~D-----------------glid~~~ 245 (349)
.+||.|++... . .++-|+-+. .++++-+.+|.|....| |.+|.+-
T Consensus 323 a~nit~~Ntag--------------~---~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~~rqyy~~C~I~GtVDFIF 385 (537)
T PLN02506 323 ARDITFRNTAG--------------P---QNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHSLRQFYRECEIYGTIDFIF 385 (537)
T ss_pred EEeeEEEeCCC--------------C---CCCceEEEEecCCcEEEEcceeecccccceecCCceEEEeeEEecccceEc
Confidence 99999998531 1 112344443 47889999999887544 6677777
Q ss_pred CCceEEEEcceeccCC-----ceeeccCCCCccCCCCceEEEEeeEecCCC---cCcCcccCCCeEEEEcceEe
Q 018853 246 GSTGITISNNYFSHHN-----EVMLLGHNDKYALDMGMQVTIAFNHFGVAL---VQRMPRCRRGYIHVVNNDFT 311 (349)
Q Consensus 246 gs~~ITISnn~f~~h~-----k~~L~G~sd~~~~d~g~~VTi~hN~F~~n~---~~R~Pr~R~G~~HvvNN~~~ 311 (349)
|.-..-+++|.|..-. +..+--++-.. .+...-..|++|.+.... -+| |--.+..+=+.|.++.
T Consensus 386 G~a~avfq~C~i~~r~~~~~~~~~iTA~~r~~-~~~~~G~vf~~c~i~~~~~~yLGR-PW~~~sr~v~~~t~l~ 457 (537)
T PLN02506 386 GNGAAVLQNCKIYTRVPLPLQKVTITAQGRKS-PHQSTGFSIQDSYVLATQPTYLGR-PWKQYSRTVFMNTYMS 457 (537)
T ss_pred cCceeEEeccEEEEccCCCCCCceEEccCCCC-CCCCcEEEEEcCEEccCCceEEec-CCCCCceEEEEecCCC
Confidence 7778888899887421 12222111000 011123566777663110 112 2223567777777775
No 62
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=95.37 E-value=0.26 Score=49.50 Aligned_cols=132 Identities=22% Similarity=0.267 Sum_probs=76.9
Q ss_pred ceEEecCCceEEeeCceEEEEecc---EEEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEee-CCc
Q 018853 149 HELIINSYKTIDGRGANVEITGNG---CLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQ 224 (349)
Q Consensus 149 ~~L~i~snkTI~G~ga~i~I~G~g---~l~i~~a~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~-gs~ 224 (349)
..++|+.-+|+-|.- ...+.|++ .+++ .+.++||++|++|+.- ..-..-+.+|-+. .++
T Consensus 45 g~~vInr~l~l~ge~-ga~l~g~g~G~~vtv-~aP~~~v~Gl~vr~sg---------------~~lp~m~agI~v~~~at 107 (408)
T COG3420 45 GNFVINRALTLRGEN-GAVLDGGGKGSYVTV-AAPDVIVEGLTVRGSG---------------RSLPAMDAGIFVGRTAT 107 (408)
T ss_pred ccEEEccceeecccc-ccEEecCCcccEEEE-eCCCceeeeEEEecCC---------------CCcccccceEEeccCcc
Confidence 456667677777762 23444422 5677 6999999999999531 1111223455543 567
Q ss_pred eEEEEeeEEecCCCCeeeeeeCCceEEEEcceecc---------CCceeec--------cCCCCccCCCCceEEEEeeEe
Q 018853 225 KIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSH---------HNEVMLL--------GHNDKYALDMGMQVTIAFNHF 287 (349)
Q Consensus 225 nVWIDHcS~s~~~Dglid~~~gs~~ITISnn~f~~---------h~k~~L~--------G~sd~~~~d~g~~VTi~hN~F 287 (349)
.--|.||.+-.+.-|.. .+++..+-|--|.+.. -+.+.++ |..-+|..|--.-=|=+||.|
T Consensus 108 ~A~Vr~N~l~~n~~Gi~--l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~S~~~~~ 185 (408)
T COG3420 108 GAVVRHNDLIGNSFGIY--LHGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDTSQHNVF 185 (408)
T ss_pred cceEEcccccccceEEE--EeccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCccccccceEEEccccccee
Confidence 77777877777777766 4566666666665552 1222333 333333333222224478888
Q ss_pred cCCCcCcCcccCCCe
Q 018853 288 GVALVQRMPRCRRGY 302 (349)
Q Consensus 288 ~~n~~~R~Pr~R~G~ 302 (349)
..| |+--+|||.
T Consensus 186 ~gn---r~~~~Rygv 197 (408)
T COG3420 186 KGN---RFRDLRYGV 197 (408)
T ss_pred ccc---chhheeeeE
Confidence 644 777788873
No 63
>PLN02314 pectinesterase
Probab=95.35 E-value=0.24 Score=52.98 Aligned_cols=167 Identities=14% Similarity=0.175 Sum_probs=100.7
Q ss_pred hHHHHhhc----CCCeEEEEecCeEEEecceEEe---cCCceEEeeCce-EEEEec------------cEEEEeeeccEE
Q 018853 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGAN-VEITGN------------GCLTLQYVSHVI 183 (349)
Q Consensus 124 tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~-i~I~G~------------g~l~i~~a~NVI 183 (349)
|+.+||.+ +..++||+=..|+-+ +.+.| .+|+|+.|.|.. ..|++. +.+.+ .+++++
T Consensus 292 TI~~Av~a~p~~~~~r~vI~ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~t~~saT~~v-~~~~F~ 368 (586)
T PLN02314 292 TINEAVASIPKKSKSRFVIYVKEGTYV--ENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTATFAA-AGKGFI 368 (586)
T ss_pred CHHHHHhhccccCCceEEEEEcCceEE--EEEEecCCCceEEEEecCCCCcEEEecCCcCCCCCccceEEEEE-EcCCeE
Confidence 88888854 234677776777654 55666 468999999875 334431 13344 689999
Q ss_pred EEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEee-CCceEEEEeeEEecCCC-----------------Ceeeeee
Q 018853 184 IHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTD-----------------GLIDAIM 245 (349)
Q Consensus 184 IrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~-gs~nVWIDHcS~s~~~D-----------------glid~~~ 245 (349)
.+||.|++..+ ....-|+-+. +++..-+.+|.|....| |.+|.+-
T Consensus 369 a~~itf~Ntag-----------------~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~~rq~y~~C~I~GtvDFIF 431 (586)
T PLN02314 369 AKDMGFINTAG-----------------AAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHSNRQFYRDCDITGTIDFIF 431 (586)
T ss_pred EEeeEEEECCC-----------------CCCCceEEEEecCCcEEEEeeEEEeccchheeCCCCEEEEeeEEEeccceec
Confidence 99999998531 1123455554 57888999999987544 6677777
Q ss_pred CCceEEEEcceeccCC-----ceeeccCCCCccCCCCceEEEEeeEecCCC-------cCcCcccCCCeEEEEcceEeC
Q 018853 246 GSTGITISNNYFSHHN-----EVMLLGHNDKYALDMGMQVTIAFNHFGVAL-------VQRMPRCRRGYIHVVNNDFTS 312 (349)
Q Consensus 246 gs~~ITISnn~f~~h~-----k~~L~G~sd~~~~d~g~~VTi~hN~F~~n~-------~~R~Pr~R~G~~HvvNN~~~~ 312 (349)
|.-..-+++|.|.--. +..+--++... .....-+.|++|.+.... -+|-- -.+..+=+.|.++.+
T Consensus 432 G~a~avf~~c~i~~~~~~~~~~~~iTA~~r~~-~~~~~G~vf~~c~i~~~~~~~~~~yLGRpW-~~ysr~v~~~s~i~~ 508 (586)
T PLN02314 432 GNAAVVFQNCNIQPRQPLPNQFNTITAQGKKD-PNQNTGISIQRCTISAFGNLTAPTYLGRPW-KDFSTTVIMQSYIGS 508 (586)
T ss_pred cCceeeeeccEEEEecCCCCCCceEecCCCCC-CCCCCEEEEEeeEEecCCcccccccccCCC-CCCceEEEEecccCC
Confidence 8888888999886321 11111111000 111134677888774211 11211 125577777777753
No 64
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=95.33 E-value=0.26 Score=52.41 Aligned_cols=119 Identities=16% Similarity=0.320 Sum_probs=81.1
Q ss_pred CCh---hHHHHhhc----CCCeEEEEecCeEEEecceEEe---cCCceEEeeCceE-EEEec------------cEEEEe
Q 018853 121 TPG---TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANV-EITGN------------GCLTLQ 177 (349)
Q Consensus 121 ~pG---tLr~av~~----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~i-~I~G~------------g~l~i~ 177 (349)
|.| |+.+||.+ ...|+|||=..|+-+ +.|.| .+|+||.|.|... .|++. +.+.+
T Consensus 244 GsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~dg~~T~~SaT~~v- 320 (548)
T PLN02301 244 GSGKYKTVKEAVASAPDNSKTRYVIYVKKGTYK--ENVEIGKKKKNLMLVGDGMDSTIITGSLNVIDGSTTFRSATVAA- 320 (548)
T ss_pred CCCCcccHHHHHHhhhhcCCceEEEEEeCceee--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCCceeeEEEEE-
Confidence 556 88888854 234677776777754 56666 4799999998753 34331 12333
Q ss_pred eeccEEEEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEee-CCceEEEEeeEEecCCC-----------------C
Q 018853 178 YVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTD-----------------G 239 (349)
Q Consensus 178 ~a~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~-gs~nVWIDHcS~s~~~D-----------------g 239 (349)
.+++++.+||.|++... . ...-|+-+. .++++-+.+|.|....| |
T Consensus 321 ~~~~F~a~nitf~Ntag--------------~---~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~G 383 (548)
T PLN02301 321 VGDGFIAQDIWFQNTAG--------------P---EKHQAVALRVSADQAVINRCRIDAYQDTLYAHSLRQFYRDSYITG 383 (548)
T ss_pred ECCceEEEeeEEEECCC--------------C---CCCceEEEEecCCcEEEEeeeeeeccccceecCCcEEEEeeEEEe
Confidence 58999999999998531 1 112344443 47888899999887544 6
Q ss_pred eeeeeeCCceEEEEcceecc
Q 018853 240 LIDAIMGSTGITISNNYFSH 259 (349)
Q Consensus 240 lid~~~gs~~ITISnn~f~~ 259 (349)
.+|.+-|.-..-+++|.|.-
T Consensus 384 tVDFIFG~a~avfq~c~i~~ 403 (548)
T PLN02301 384 TVDFIFGNAAVVFQNCKIVA 403 (548)
T ss_pred ccceecccceeEEeccEEEE
Confidence 67777777888888888864
No 65
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=95.28 E-value=0.28 Score=52.13 Aligned_cols=115 Identities=15% Similarity=0.245 Sum_probs=80.1
Q ss_pred hHHHHhhc-----CCCeEEEEecCeEEEecceEEe---cCCceEEeeCce-EEEEe------c-------cEEEEeeecc
Q 018853 124 TLRHAVIQ-----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGAN-VEITG------N-------GCLTLQYVSH 181 (349)
Q Consensus 124 tLr~av~~-----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga~-i~I~G------~-------g~l~i~~a~N 181 (349)
|+.+||.+ ...+.|||=..|+-+ +.|.| ..|+||.|.|.. ..|.+ . +.+.+ .+++
T Consensus 255 TIq~Av~a~p~~~~~~r~vI~vk~GvY~--E~V~i~~~k~~v~l~G~g~~~TiIt~~~~~~~~g~~T~~saT~~v-~~~~ 331 (553)
T PLN02708 255 TVQEAVNAAPDNNGDRKFVIRIKEGVYE--ETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTATVGV-LGDG 331 (553)
T ss_pred CHHHHHHhhhhccCCccEEEEEeCceEE--eeeeecCCCccEEEEecCCCceEEEecCccCCCCcCccceEEEEE-EcCC
Confidence 78888853 133667776777664 55655 579999999875 34442 1 23444 5899
Q ss_pred EEEEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEee-CCceEEEEeeEEecCCC-----------------Ceeee
Q 018853 182 VIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTD-----------------GLIDA 243 (349)
Q Consensus 182 VIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~-gs~nVWIDHcS~s~~~D-----------------glid~ 243 (349)
++.+||.|++.. | ...+-|+-+. .++.+-+.+|.|....| |.+|.
T Consensus 332 f~a~~it~~Nta--------------g---~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~rq~y~~C~I~GtVDF 394 (553)
T PLN02708 332 FMARDLTIQNTA--------------G---PDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHSLRQFYKSCRIQGNVDF 394 (553)
T ss_pred eEEEeeEEEcCC--------------C---CCCCceEEEEecCCcEEEEeeeeeeccccceeCCCceEEEeeEEeecCCE
Confidence 999999999752 1 1123455554 58899999999987544 77778
Q ss_pred eeCCceEEEEcceec
Q 018853 244 IMGSTGITISNNYFS 258 (349)
Q Consensus 244 ~~gs~~ITISnn~f~ 258 (349)
+-|.-.+-+++|.|.
T Consensus 395 IFG~a~avfq~c~i~ 409 (553)
T PLN02708 395 IFGNSAAVFQDCAIL 409 (553)
T ss_pred EecCceEEEEccEEE
Confidence 778888889999887
No 66
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=94.05 E-value=1.9 Score=44.50 Aligned_cols=103 Identities=13% Similarity=0.100 Sum_probs=66.1
Q ss_pred hHHHHhhc-----CCCeEEEEecCeEEEecceEEe---cCCceEEeeCc---eEEEEec---------------------
Q 018853 124 TLRHAVIQ-----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGA---NVEITGN--------------------- 171 (349)
Q Consensus 124 tLr~av~~-----~~P~~IvF~~~g~I~L~~~L~i---~snkTI~G~ga---~i~I~G~--------------------- 171 (349)
|+.+||.+ ...+++||=..|+-+ +.|.| .+++||.|.|. .+.|...
T Consensus 96 TIQaAIdAa~~~~~~~r~~I~Ik~GvY~--EkV~Ip~~kp~ItL~G~G~~~~~TvIt~~~~~~~~~~~~~~~~~~~g~~~ 173 (422)
T PRK10531 96 TVQAAVDAAIAKRTNKRQYIAVMPGTYQ--GTVYVPAAAPPITLYGTGEKPIDVKIGLALDGEMSPADWRANVNPRGKYM 173 (422)
T ss_pred CHHHHHhhccccCCCceEEEEEeCceeE--EEEEeCCCCceEEEEecCCCCCceEEEecCcccccccccccccccccccc
Confidence 78888863 123566665667554 55666 57999999764 3555432
Q ss_pred -------------------------cEEEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEee-CCce
Q 018853 172 -------------------------GCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQK 225 (349)
Q Consensus 172 -------------------------g~l~i~~a~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~-gs~n 225 (349)
+.+.+ .+++++.+||.|++..+.+. ...++-|+-+. .+++
T Consensus 174 ~~~p~~y~~d~~~~~~~~~~gT~~SATv~v-~ad~F~a~NLTf~Ntag~~~-------------~~~~~QAVALrv~GDr 239 (422)
T PRK10531 174 PGKPAWYMYDSCQSKRAATIGTLCSAVFWS-QNNGLQLQNLTIENTLGDSV-------------DAGNHPAVALRTDGDK 239 (422)
T ss_pred ccccccccccccccccCCCcCceeeEEEEE-ECCCEEEEeeEEEeCCCCCC-------------CCCcceeEEEEEcCCc
Confidence 12333 68999999999998642100 01123344444 4789
Q ss_pred EEEEeeEEecCCCCeee
Q 018853 226 IWVDHCSLSYCTDGLID 242 (349)
Q Consensus 226 VWIDHcS~s~~~Dglid 242 (349)
+.+.+|.|....|=|+.
T Consensus 240 a~fy~C~flG~QDTLy~ 256 (422)
T PRK10531 240 VQIENVNILGRQDTFFV 256 (422)
T ss_pred EEEEeeEEecccceeee
Confidence 99999999887777764
No 67
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=93.78 E-value=0.54 Score=43.34 Aligned_cols=115 Identities=18% Similarity=0.174 Sum_probs=66.7
Q ss_pred EEEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCCCCCCCc-EEee-CCceEEEEeeEEecCCCCeee------ee
Q 018853 173 CLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDG-ISIF-GSQKIWVDHCSLSYCTDGLID------AI 244 (349)
Q Consensus 173 ~l~i~~a~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDa-Isi~-gs~nVWIDHcS~s~~~Dglid------~~ 244 (349)
.|.+.+++||+|.+..|....... . ....|+ +.+. ++++|=|-+|-|.......+- ..
T Consensus 77 ai~i~~~~nVWIDH~sfs~~~~~~-------------~-~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~ 142 (200)
T PF00544_consen 77 AISIDNSSNVWIDHCSFSWGNFEC-------------N-SDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNST 142 (200)
T ss_dssp SEEEESTEEEEEES-EEEETTS-G-------------G-GSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGG
T ss_pred eEEEEecccEEEeccEEecccccc-------------c-cccCCceEEEEeCCceEEEEchhccccccccccCCCCCccc
Confidence 488889999999999999762110 0 111343 5665 578888888888765333221 01
Q ss_pred eCCceEEEEcceeccCCceeeccCCCCccCCCCceEEEEeeEecCCCcCcCcccCC-CeEEEEcceE
Q 018853 245 MGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRR-GYIHVVNNDF 310 (349)
Q Consensus 245 ~gs~~ITISnn~f~~h~k~~L~G~sd~~~~d~g~~VTi~hN~F~~n~~~R~Pr~R~-G~~HvvNN~~ 310 (349)
.....||+-+|+|.+...=+ ...+.-++-+.+|+|. +..+..=.+|. +.+-+-||||
T Consensus 143 ~~~~~vT~hhN~f~~~~~R~--------P~~r~G~~Hv~NN~~~-~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 143 DRGLRVTFHHNYFANTNSRN--------PRVRFGYVHVYNNYYY-NWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp GTTEEEEEES-EEEEEEE-T--------TEECSCEEEEES-EEE-EECSESEEEETTEEEEEES-EE
T ss_pred cCCceEEEEeEEECchhhCC--------CcccccEEEEEEeeeE-CCCCEEEEccCCeEEEEECcCC
Confidence 12259999999997542110 1112237888999995 44554444443 4788888886
No 68
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=91.73 E-value=6.1 Score=39.99 Aligned_cols=70 Identities=23% Similarity=0.277 Sum_probs=57.1
Q ss_pred EEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEeeCCceEEEEeeEEecCCCCeeeeeeCCceEEEE
Q 018853 174 LTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITIS 253 (349)
Q Consensus 174 l~i~~a~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~gs~nVWIDHcS~s~~~Dglid~~~gs~~ITIS 253 (349)
|.+.++..+.|..-+|.+.. ..+...-|+||++.+++.+-|--..+|...||+. ..-|..-+|+
T Consensus 123 i~l~~s~d~~i~~n~i~G~~--------------~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy--~~~S~~~~~~ 186 (408)
T COG3420 123 IYLHGSADVRIEGNTIQGLA--------------DLRVAERGNGIYVYNAPGALVVGNDISYGRDGIY--SDTSQHNVFK 186 (408)
T ss_pred EEEeccCceEEEeeEEeecc--------------ccchhhccCceEEEcCCCcEEEcCccccccceEE--Ecccccceec
Confidence 77889999999999998643 1233456899999999999999999999999998 4567777888
Q ss_pred cceecc
Q 018853 254 NNYFSH 259 (349)
Q Consensus 254 nn~f~~ 259 (349)
.|.|.+
T Consensus 187 gnr~~~ 192 (408)
T COG3420 187 GNRFRD 192 (408)
T ss_pred ccchhh
Confidence 887775
No 69
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=83.44 E-value=12 Score=37.44 Aligned_cols=119 Identities=17% Similarity=0.137 Sum_probs=70.5
Q ss_pred CCCcEEeeCCceEEEEeeEEecCC-----CCeeeeeeCCceEEEEcceeccCCceeeccCCCCcc-CCCC-ceEEEEeeE
Q 018853 214 DGDGISIFGSQKIWVDHCSLSYCT-----DGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYA-LDMG-MQVTIAFNH 286 (349)
Q Consensus 214 dgDaIsi~gs~nVWIDHcS~s~~~-----Dglid~~~gs~~ITISnn~f~~h~k~~L~G~sd~~~-~d~g-~~VTi~hN~ 286 (349)
-+-++.|..+.||+|...+|.... +..|.+..++.+|=|-+|-|..|....---+.|... ..++ --||+.+|+
T Consensus 115 ~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~ 194 (345)
T COG3866 115 VGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNK 194 (345)
T ss_pred EeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeee
Confidence 356788888999999999999865 334445567888989999888754321111122211 1122 469999999
Q ss_pred ecCCCcCcCcccC--------CC--eEEEEcceEeCCcceEEecCCCceEEEEcceEeC
Q 018853 287 FGVALVQRMPRCR--------RG--YIHVVNNDFTSWEMYAIGGSANPTINSQGNRYTA 335 (349)
Q Consensus 287 F~~n~~~R~Pr~R--------~G--~~HvvNN~~~~~~~yaigg~~~~~i~~egN~F~~ 335 (349)
|.++..+ -.|. -| .+-+-+|+|.|--.-+-.-+ -..+-+-+|||+.
T Consensus 195 fhdh~Ks--sl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriR-fG~vHvyNNYy~~ 250 (345)
T COG3866 195 FHDHDKS--SLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIR-FGMVHVYNNYYEG 250 (345)
T ss_pred eecCCee--eeeccCCcccccCCceeEEEeccccccccccCCceE-eeEEEEecccccc
Confidence 9643211 1111 12 24556788877532111000 1257778899983
No 70
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=82.66 E-value=3.1 Score=42.99 Aligned_cols=105 Identities=22% Similarity=0.190 Sum_probs=43.4
Q ss_pred ceEEEEeeEEecCC--CCeeeeeeCCceEEEEcceeccCCceeeccCCCCccCCCCceEEEEeeEecCCCcC-cCcccC-
Q 018853 224 QKIWVDHCSLSYCT--DGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQ-RMPRCR- 299 (349)
Q Consensus 224 ~nVWIDHcS~s~~~--Dglid~~~gs~~ITISnn~f~~h~k~~L~G~sd~~~~d~g~~VTi~hN~F~~n~~~-R~Pr~R- 299 (349)
++..|.|+-|..|. -|+|++ .|..-||++|-|.+....+-+=|. -.-++..|+|-.+... -.+-+|
T Consensus 199 s~t~Ve~NlFe~cdGE~EIISv--KS~~N~ir~Ntf~es~G~ltlRHG--------n~n~V~gN~FiGng~~~~tGGIRI 268 (425)
T PF14592_consen 199 SNTTVENNLFERCDGEVEIISV--KSSDNTIRNNTFRESQGSLTLRHG--------NRNTVEGNVFIGNGVKEGTGGIRI 268 (425)
T ss_dssp ---EEES-EEEEE-SSSEEEEE--ESBT-EEES-EEES-SSEEEEEE---------SS-EEES-EEEE-SSSS-B--EEE
T ss_pred cceeeecchhhhcCCceeEEEe--ecCCceEeccEEEeccceEEEecC--------CCceEeccEEecCCCcCCCCceEE
Confidence 45556666665553 234432 355556666666655443333222 1457777888532111 134455
Q ss_pred CCeEE-EEcceEeCCcc----------eEEecC------CCceEEEEcceEeCCCC
Q 018853 300 RGYIH-VVNNDFTSWEM----------YAIGGS------ANPTINSQGNRYTAPPD 338 (349)
Q Consensus 300 ~G~~H-vvNN~~~~~~~----------yaigg~------~~~~i~~egN~F~~~~~ 338 (349)
+|.-| |+|||+++-.. +++-.+ .-..+.+++|-|++...
T Consensus 269 i~~~H~I~nNY~~gl~g~~~~~~~~v~ng~p~s~ln~y~qv~nv~I~~NT~In~~~ 324 (425)
T PF14592_consen 269 IGEGHTIYNNYFEGLTGTRFRGALAVMNGVPNSPLNRYDQVKNVLIANNTFINCKS 324 (425)
T ss_dssp -SBS-EEES-EEEESSB-TTTTSEE-EEE--BSTTSTT---BSEEEES-EEES-SE
T ss_pred ecCCcEEEcceeeccccceeecceeeccCCCCCCcccccccceeEEecceEEccCC
Confidence 35444 57888876432 222111 12257788898888764
No 71
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=81.30 E-value=2.7 Score=28.89 Aligned_cols=41 Identities=27% Similarity=0.262 Sum_probs=31.2
Q ss_pred cEEeeCCceEEEEeeEEecCCCCeeeeeeCCceEEEEcceecc
Q 018853 217 GISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSH 259 (349)
Q Consensus 217 aIsi~gs~nVWIDHcS~s~~~Dglid~~~gs~~ITISnn~f~~ 259 (349)
||.+..+++..|..+.++...||.. ...+.+-+|..|.+.+
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~--~~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIY--LTDSSNNTLSNNTASS 41 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEE--EEeCCCCEeECCEEEc
Confidence 5777778888888888888888665 4567777888877764
No 72
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=80.82 E-value=7.8 Score=41.37 Aligned_cols=131 Identities=18% Similarity=0.236 Sum_probs=80.0
Q ss_pred CCCeEEEEecCeEEEecc------e---EE-e-cCCceEEeeCce-EEEEe-ccEEEEeeeccEEEEeeEEEeeccCCCc
Q 018853 132 TEPIWITFASNMLIKLKH------E---LI-I-NSYKTIDGRGAN-VEITG-NGCLTLQYVSHVIIHNVHIHHCKPSGNT 198 (349)
Q Consensus 132 ~~P~~IvF~~~g~I~L~~------~---L~-i-~snkTI~G~ga~-i~I~G-~g~l~i~~a~NVIIrnL~I~~~~p~~~~ 198 (349)
..|+.+.|..--.+.+.. + +. + -+++||.+..-+ .+..+ .| |.+..++||.|.+.+|.-
T Consensus 236 ~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~NtDG-~d~~sc~NvlI~~~~fdt------- 307 (542)
T COG5434 236 VRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFDNTDG-FDPGSCSNVLIEGCRFDT------- 307 (542)
T ss_pred cCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCCCCCc-cccccceeEEEeccEEec-------
Confidence 478888888765554431 1 11 1 245555554211 01102 24 777789999999999973
Q ss_pred cccCCCCccccCCCCCCCcEEee------------CCceEEEEeeEEecCCCCeeeeee---CCceEEEEcceeccCCce
Q 018853 199 MIASSPTHVGYRGKSDGDGISIF------------GSQKIWVDHCSLSYCTDGLIDAIM---GSTGITISNNYFSHHNEV 263 (349)
Q Consensus 199 ~v~~~~~~~G~r~~~dgDaIsi~------------gs~nVWIDHcS~s~~~Dglid~~~---gs~~ITISnn~f~~h~k~ 263 (349)
+.|+|.++ -+++|||-||-|+.+.-++..-.+ +..+|++-+|.|.+-+.+
T Consensus 308 ---------------gDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~~d~G 372 (542)
T COG5434 308 ---------------GDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDNTDRG 372 (542)
T ss_pred ---------------CCceEEeecccCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEeeeeccCcce
Confidence 12333332 257899999999988877765332 468999999999987666
Q ss_pred eeccCCCCccCCCC-ceEEEEeeEe
Q 018853 264 MLLGHNDKYALDMG-MQVTIAFNHF 287 (349)
Q Consensus 264 ~L~G~sd~~~~d~g-~~VTi~hN~F 287 (349)
.-|...+... -+ .+|+|..|..
T Consensus 373 LRikt~~~~g--G~v~nI~~~~~~~ 395 (542)
T COG5434 373 LRIKTNDGRG--GGVRNIVFEDNKM 395 (542)
T ss_pred eeeeeecccc--eeEEEEEEecccc
Confidence 6555443222 11 2455555544
No 73
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=80.51 E-value=4.6 Score=37.51 Aligned_cols=88 Identities=24% Similarity=0.218 Sum_probs=54.9
Q ss_pred ceEEEEcceeccCC--ceeeccCCCCccCCCCceEEEEeeEecCCCcCcCcccC--CC-------eEEEEcceEeCCc--
Q 018853 248 TGITISNNYFSHHN--EVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCR--RG-------YIHVVNNDFTSWE-- 314 (349)
Q Consensus 248 ~~ITISnn~f~~h~--k~~L~G~sd~~~~d~g~~VTi~hN~F~~n~~~R~Pr~R--~G-------~~HvvNN~~~~~~-- 314 (349)
++|.|=||.+.+-. ..-|+|...+|..+....|.+|||.|.. ....|... .| ..-+.||+|+..-
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~--tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~a 79 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYD--TGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHA 79 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeec--CCcCCCCceeeeEEeccccccEEEeeeecccccc
Confidence 46778888888643 3457787777777777789999999974 33566554 22 2467889887643
Q ss_pred ----ceEEe----cCCCceEEEEcceEeCCC
Q 018853 315 ----MYAIG----GSANPTINSQGNRYTAPP 337 (349)
Q Consensus 315 ----~yaig----g~~~~~i~~egN~F~~~~ 337 (349)
||..+ .+.+-+..+.+|.+.+..
T Consensus 80 ai~~~y~~~~~sp~gsgyttivRNNII~NT~ 110 (198)
T PF08480_consen 80 AIAQMYPDYDLSPKGSGYTTIVRNNIIVNTR 110 (198)
T ss_pred eEEEEecccccCCCCCceEEEEEcceEeeee
Confidence 23222 112334556666665543
No 74
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=72.68 E-value=15 Score=34.73 Aligned_cols=48 Identities=17% Similarity=0.172 Sum_probs=33.7
Q ss_pred CCCCCcEEeeCCc-eEEEEeeEEecCCCCeeeeeeCCceEEEEcceeccC
Q 018853 212 KSDGDGISIFGSQ-KIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHH 260 (349)
Q Consensus 212 ~~dgDaIsi~gs~-nVWIDHcS~s~~~Dglid~~~gs~~ITISnn~f~~h 260 (349)
.-..||+++.+.. .+.|.-.++..+.|-.|- ..+...++|++-+..++
T Consensus 93 dVcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q-~Ng~Gtv~I~nF~a~d~ 141 (215)
T PF03211_consen 93 DVCEDAATFKGDGGTVTIIGGGARNASDKVFQ-HNGGGTVTIKNFYAEDF 141 (215)
T ss_dssp S-SSESEEEESSEEEEEEESTEEEEEEEEEEE-E-SSEEEEEEEEEEEEE
T ss_pred ccceeeeEEcCCCceEEEeCCcccCCCccEEE-ecCceeEEEEeEEEcCC
Confidence 3456888888777 888888888888888774 34556788888444443
No 75
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=64.99 E-value=1.2e+02 Score=28.32 Aligned_cols=73 Identities=15% Similarity=0.090 Sum_probs=45.3
Q ss_pred CCceEEEEeeEEecCC-CCeeee-----eeCCceEEEEcceeccCCc--eeeccCCC-CccCCCCceEEEEeeEecCCCc
Q 018853 222 GSQKIWVDHCSLSYCT-DGLIDA-----IMGSTGITISNNYFSHHNE--VMLLGHND-KYALDMGMQVTIAFNHFGVALV 292 (349)
Q Consensus 222 gs~nVWIDHcS~s~~~-Dglid~-----~~gs~~ITISnn~f~~h~k--~~L~G~sd-~~~~d~g~~VTi~hN~F~~n~~ 292 (349)
.+++|+|.|+.|..+. ...++. ..|-.+..|-||.|..-.. +.-..... ......+...++.+|.+. |+.
T Consensus 32 ~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII~-NT~ 110 (198)
T PF08480_consen 32 SAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNIIV-NTR 110 (198)
T ss_pred ccccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceEe-eee
Confidence 3579999999999863 222221 3456688999999996332 22111111 112334567788999996 677
Q ss_pred CcC
Q 018853 293 QRM 295 (349)
Q Consensus 293 ~R~ 295 (349)
+|-
T Consensus 111 ~r~ 113 (198)
T PF08480_consen 111 KRK 113 (198)
T ss_pred ecc
Confidence 663
No 76
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=60.23 E-value=83 Score=30.92 Aligned_cols=71 Identities=15% Similarity=0.236 Sum_probs=37.7
Q ss_pred CCceEEEEeeEEecCCCCeeeeeeCCceEEEEcceeccCCceeeccCCCCccCCCCceEEEEeeEecCCCcCcCcccCCC
Q 018853 222 GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRG 301 (349)
Q Consensus 222 gs~nVWIDHcS~s~~~Dglid~~~gs~~ITISnn~f~~h~k~~L~G~sd~~~~d~g~~VTi~hN~F~~n~~~R~Pr~R~G 301 (349)
+++||-|.|+.|-- -|+...+.||||.++.+..- -+|.. -.++|+.+|... + -.|.|---
T Consensus 154 ~~kNvei~ns~l~s-----KDAFWn~eNVtVyDS~i~GE----YLgW~-------SkNltliNC~I~-g---~QpLCY~~ 213 (277)
T PF12541_consen 154 YCKNVEIHNSKLDS-----KDAFWNCENVTVYDSVINGE----YLGWN-------SKNLTLINCTIE-G---TQPLCYCD 213 (277)
T ss_pred ceeeEEEEccEEec-----ccccccCCceEEEcceEeee----EEEEE-------cCCeEEEEeEEe-c---cCccEeec
Confidence 45555555555432 13334566666666666521 12211 136888888774 2 35666434
Q ss_pred eEEEEcceEeC
Q 018853 302 YIHVVNNDFTS 312 (349)
Q Consensus 302 ~~HvvNN~~~~ 312 (349)
.+.+.|+-+.+
T Consensus 214 ~L~l~nC~~~~ 224 (277)
T PF12541_consen 214 NLVLENCTMID 224 (277)
T ss_pred ceEEeCcEeec
Confidence 56667776653
No 77
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=57.89 E-value=20 Score=35.79 Aligned_cols=64 Identities=22% Similarity=0.484 Sum_probs=45.2
Q ss_pred EEEeccE---EEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEeeCCceEEEEeeEEecCCCCee
Q 018853 167 EITGNGC---LTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLI 241 (349)
Q Consensus 167 ~I~G~g~---l~i~~a~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~gs~nVWIDHcS~s~~~Dgli 241 (349)
.|+|..| +-+.+.+..||||+.-+++.|. +.....-|..-+.|+|++|..||..++.++.--++
T Consensus 252 nitgs~crqlvhvengkhfvirnvkaknitpd-----------fskkagidnatvaiygcdnfvidni~mvnsagmli 318 (464)
T PRK10123 252 NITGSDCRQLIHVENGKHFVIRNIKAKNITPD-----------FSKKAGIDNATVAIYGCDNFVIDNIEMINSAGMLI 318 (464)
T ss_pred eccCcChhheEEecCCcEEEEEeeeccccCCC-----------chhhcCCCcceEEEEcccceEEeccccccccccEE
Confidence 4555543 3345778899999999988763 22222335566789999999999999999865554
No 78
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=52.96 E-value=64 Score=31.12 Aligned_cols=89 Identities=20% Similarity=0.238 Sum_probs=51.7
Q ss_pred ecCCceEEeeCceE-EE-EeccEEEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEeeC------Cc
Q 018853 153 INSYKTIDGRGANV-EI-TGNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFG------SQ 224 (349)
Q Consensus 153 i~snkTI~G~ga~i-~I-~G~g~l~i~~a~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~g------s~ 224 (349)
..++.+|.|.+-.- .. +|.| +.|. ..+..|+|-+|+++. .+||.+.+ ..
T Consensus 95 ~~~~~~i~GvtItN~n~~~g~G-i~Ie-ss~~tI~Nntf~~~~---------------------~~GI~v~g~~~~~~i~ 151 (246)
T PF07602_consen 95 LANNATISGVTITNPNIARGTG-IWIE-SSSPTIANNTFTNNG---------------------REGIFVTGTSANPGIN 151 (246)
T ss_pred ecCCCEEEEEEEEcCCCCcceE-EEEe-cCCcEEEeeEEECCc---------------------cccEEEEeeecCCccc
Confidence 35666777653211 11 3344 8885 449999999999753 24455443 23
Q ss_pred eEEEEeeEEecCCCCeeeee-eCCceEEEEcceeccCCcee
Q 018853 225 KIWVDHCSLSYCTDGLIDAI-MGSTGITISNNYFSHHNEVM 264 (349)
Q Consensus 225 nVWIDHcS~s~~~Dglid~~-~gs~~ITISnn~f~~h~k~~ 264 (349)
++.|.-.++..+..|..-.. .....-+|.||+|.+...++
T Consensus 152 ~~vI~GN~~~~~~~Gi~i~~~~~~~~n~I~NN~I~~N~~Gi 192 (246)
T PF07602_consen 152 GNVISGNSIYFNKTGISISDNAAPVENKIENNIIENNNIGI 192 (246)
T ss_pred ceEeecceEEecCcCeEEEcccCCccceeeccEEEeCCcCe
Confidence 55566667777666653211 11122478999999755443
No 79
>COG4001 Predicted metal-binding protein [General function prediction only]
Probab=44.67 E-value=7.7 Score=32.00 Aligned_cols=38 Identities=29% Similarity=0.768 Sum_probs=27.1
Q ss_pred HHHHHHhhhhccccchhcccccccc-CCCc-------------eeeecccCc
Q 018853 41 AQDVQRRVNVSLSRRQALAINAQCQ-TGNP-------------IDDCWHCDP 78 (349)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~np-------------~d~~wr~~~ 78 (349)
+.-+++-++..++||-|....++|. -|+| -|.||.|..
T Consensus 5 i~v~~~vlds~Larr~mk~~tg~C~~cGd~Rik~Ald~alggR~daCwkCra 56 (102)
T COG4001 5 IRVLNRVLDSELARRLMKLMTGECRKCGDPRIKSALDHALGGRDDACWKCRA 56 (102)
T ss_pred HHHHHHHhccHHHHHHHHHhcccccccccHHHHHHHHHHHcCchhHHHHHHH
Confidence 4456666777778888876667787 3555 688999964
No 80
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=43.70 E-value=93 Score=32.98 Aligned_cols=69 Identities=20% Similarity=0.299 Sum_probs=46.9
Q ss_pred EEEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEee-CCceEEEEeeEEecCCC-------------
Q 018853 173 CLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTD------------- 238 (349)
Q Consensus 173 ~l~i~~a~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~-gs~nVWIDHcS~s~~~D------------- 238 (349)
.+.+ .+++++.+||.|++... . .+.-|+-+. .++++-+.+|.|....|
T Consensus 264 T~~v-~~~~F~a~nitf~Ntag--------------~---~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~~~~rqyy~~ 325 (497)
T PLN02698 264 TFTI-TGDGFIARDIGFKNAAG--------------P---KGEQAIALSITSDHSVLYRCSIAGYQDTLYAAALRQFYRE 325 (497)
T ss_pred eEEE-ECCCeEEEeeEEEECCC--------------C---CCCceEEEEecCCcEEEEcceeecccchheeCCCcEEEEe
Confidence 4555 58999999999998531 1 111344333 47778888888876544
Q ss_pred ----CeeeeeeCCceEEEEcceecc
Q 018853 239 ----GLIDAIMGSTGITISNNYFSH 259 (349)
Q Consensus 239 ----glid~~~gs~~ITISnn~f~~ 259 (349)
|.+|.+-|.-..-+++|.|..
T Consensus 326 C~I~G~vDFIFG~a~avf~~C~i~~ 350 (497)
T PLN02698 326 CDIYGTIDFIFGNAAAVFQNCYLFL 350 (497)
T ss_pred eEEEeccceEecccceeecccEEEE
Confidence 667777777778888888863
No 81
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=38.75 E-value=73 Score=31.28 Aligned_cols=64 Identities=17% Similarity=0.232 Sum_probs=40.1
Q ss_pred eeeccEEEEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEeeCCceEEEEeeEEecCCCCeeeeeeCCceEEEEcce
Q 018853 177 QYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNY 256 (349)
Q Consensus 177 ~~a~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~gs~nVWIDHcS~s~~~Dglid~~~gs~~ITISnn~ 256 (349)
-+++|..|.|.+|.+.. .+ +.-++||-+++|.|.|-.= ..-++++.|.+|.
T Consensus 16 f~~~d~~l~~~~f~dGE----------------------S~--LKes~nI~~~~~~F~~KYP-----~Wh~~~~~i~~~~ 66 (277)
T PF12541_consen 16 FGSHDLRLENCTFADGE----------------------SP--LKESRNIELKNCIFKWKYP-----LWHSDNIKIENCY 66 (277)
T ss_pred cccCCCEEEeeEEeCCC----------------------cc--cccccceEEECCEEeeECc-----eEEECCeEEEeeE
Confidence 46889999999987531 11 2357888888888877321 1135666677777
Q ss_pred eccCCceeeccCC
Q 018853 257 FSHHNEVMLLGHN 269 (349)
Q Consensus 257 f~~h~k~~L~G~s 269 (349)
|.+-...-+|-+.
T Consensus 67 f~~~aRa~iWYs~ 79 (277)
T PF12541_consen 67 FTEMARAAIWYSN 79 (277)
T ss_pred EeecceeeeeEeC
Confidence 7765555555443
No 82
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=36.20 E-value=82 Score=21.35 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=30.4
Q ss_pred EEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCCCCCCCcEEeeCCceEEEEeeEEecC
Q 018853 174 LTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYC 236 (349)
Q Consensus 174 l~i~~a~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~~dgDaIsi~gs~nVWIDHcS~s~~ 236 (349)
|.+..+++..|++=+|.+. .|||.+..+++--|..+.++..
T Consensus 2 I~l~~s~~~~i~~N~i~~~----------------------~~GI~~~~s~~n~i~~N~~~~n 42 (44)
T TIGR03804 2 IYLESSSNNTLENNTASNN----------------------SYGIYLTDSSNNTLSNNTASSN 42 (44)
T ss_pred EEEEecCCCEEECcEEeCC----------------------CCEEEEEeCCCCEeECCEEEcC
Confidence 5566677777777777642 4699999998888888887754
No 83
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=20.40 E-value=9.6e+02 Score=24.81 Aligned_cols=79 Identities=22% Similarity=0.301 Sum_probs=41.9
Q ss_pred EEeeeccEEEEeeEEEeeccCCCccccCCCCccccCCC---CCCCcEEeeCCceEEEEeeEEecCCCCeeeeeeCCceEE
Q 018853 175 TLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGK---SDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGIT 251 (349)
Q Consensus 175 ~i~~a~NVIIrnL~I~~~~p~~~~~v~~~~~~~G~r~~---~dgDaIsi~gs~nVWIDHcS~s~~~Dglid~~~gs~~IT 251 (349)
.+....+++||+-.|.+.. | .-++.... ...|+- .-.-||.-.+...+=|.+|.|..|.=|.+. ....+
T Consensus 140 ~f~~~t~~~~hgC~F~gf~--g-~cl~~~~~-~~VrGC~F~~C~~gi~~~~~~~lsVk~C~FekC~igi~s----~G~~~ 211 (386)
T PF01696_consen 140 VFHANTNTLFHGCSFFGFH--G-TCLESWAG-GEVRGCTFYGCWKGIVSRGKSKLSVKKCVFEKCVIGIVS----EGPAR 211 (386)
T ss_pred EEEecceEEEEeeEEecCc--c-eeEEEcCC-cEEeeeEEEEEEEEeecCCcceEEeeheeeeheEEEEEe----cCCeE
Confidence 3446788888888887653 1 11110000 000000 001123333445677788888888766642 44677
Q ss_pred EEcceeccCC
Q 018853 252 ISNNYFSHHN 261 (349)
Q Consensus 252 ISnn~f~~h~ 261 (349)
|++|-|.+-.
T Consensus 212 i~hn~~~ec~ 221 (386)
T PF01696_consen 212 IRHNCASECG 221 (386)
T ss_pred Eecceecccc
Confidence 8888888644
Done!