RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 018854
(349 letters)
>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis,
glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia
coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A*
Length = 299
Score = 243 bits (623), Expect = 2e-79
Identities = 71/276 (25%), Positives = 130/276 (47%), Gaps = 30/276 (10%)
Query: 79 SERDEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIV 138
++ +R+ + GR++ D+ +LL C + + ++ ++ +A + +++ R DI
Sbjct: 2 TDNTRLRIAMQKSGRLSDDSRELLARCGIKIN-LHTQRLIAMAENM-PIDILRVRDDDIP 59
Query: 139 RKLLSGDLDLGIVGLDTVSEFG-----QGNEDLIIVHDALDYGDCRLSLAIPKYGIFENI 193
++ G +DLGI+G + + E QG + LD+G CRLSLA P ++
Sbjct: 60 GLVMDGVVDLGIIGENVLEEELLNRRAQGEDPRYFTLRRLDFGGCRLSLATPVDEAWDGP 119
Query: 194 NSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAMGIADA 253
SL R+AT + +L +++ G+ +G++E AP G+ADA
Sbjct: 120 LSLNGK------------RIATSYPHLLKRYLDQKGISFKSC-LLNGSVEVAPRAGLADA 166
Query: 254 ILDLVSSGTTLRENNLKEIEGGVVLESQAVLVASRKSLIRRKGVLDATHEILERLEAHLR 313
I DLVS+G TL N L+E+E V+ S+A L+ + K ++L R++ ++
Sbjct: 167 ICDLVSTGATLEANGLREVE--VIYRSKACLIQRDGEMEESKQ--QLIDKLLTRIQGVIQ 222
Query: 314 ASGQFTVTANMRGNSAEEVAERILSQTSFSGLQGPT 349
A + + +EV +L G + PT
Sbjct: 223 ARESKYIMMHAPTERLDEVIA-LL-----PGAERPT 252
>2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase,
HISG, histidine, magnesi transferase; HET: HIS; 2.45A
{Methanobacterium thermoautotrophicum}
Length = 289
Score = 238 bits (609), Expect = 2e-77
Identities = 79/270 (29%), Positives = 132/270 (48%), Gaps = 30/270 (11%)
Query: 81 RDEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRK 140
+IR+ +PSKGR++ + LL++ + +K R+ ++ +EV F R DI
Sbjct: 2 VPKIRIAVPSKGRISEPAIRLLENAGVGLKDTVNRKLFSKTQHP-QIEVMFSRAADIPEF 60
Query: 141 LLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELA 200
+ G DLGI G D + E G D+ I+ D L YG L LA P+ +
Sbjct: 61 VADGAADLGITGYDLIVERG---SDVEILED-LKYGRASLVLAAPEDSTIRGPEDIPR-- 114
Query: 201 QMPQWTAEKPLRVATGFTYLGPKFMKDNGLK-HVVFSTADGALEAAPAMGIADAILDLVS 259
+AT F + +++++G+ VV G+ E AP +G+AD I DL S
Sbjct: 115 ---------GAVIATEFPGITENYLREHGIDAEVVEL--TGSTEIAPFIGVADLITDLSS 163
Query: 260 SGTTLRENNLKEIEGGVVLESQAVLVASRKSLIRRKGVLDATHEILERLEAHLRASGQFT 319
+GTTLR N+L+ I+ +LES L+A+R+S + G+++ E+ + + A G+
Sbjct: 164 TGTTLRMNHLRVID--TILESSVKLIANRESYATKSGIIE---ELRTGIRGVIDAEGKRL 218
Query: 320 VTANMRGNSAEEVAERILSQTSFSGLQGPT 349
V N+ + + V ++ G+ GPT
Sbjct: 219 VMLNIDRKNLDRVRA-LM-----PGMTGPT 242
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis,
PRPP, structural genomics, PSI, protei structure
initiative; HET: AMP HIS; 1.80A {Mycobacterium
tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A*
Length = 304
Score = 224 bits (572), Expect = 2e-71
Identities = 66/275 (24%), Positives = 124/275 (45%), Gaps = 29/275 (10%)
Query: 75 DNRISERDEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRP 134
+ S +R+ +P+KG ++ ++L + + + + P N+E +F RP
Sbjct: 13 HHHHSSGMMLRVAVPNKGALSEPATEILAEAGYRRR-TDSKDLTVIDPVN-NVEFFFLRP 70
Query: 135 KDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENIN 194
KDI + SG+LD GI G D V + G + L +G A P +
Sbjct: 71 KDIAIYVGSGELDFGITGRDLVCDSG---AQVRERLA-LGFGSSSFRYAAPAGRNW---- 122
Query: 195 SLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALEAAPAMGIADAI 254
+ +LA +R+AT + L K + G++ V DGA+E + +G+ADAI
Sbjct: 123 TTADLA---------GMRIATAYPNLVRKDLATKGIEATVI-RLDGAVEISVQLGVADAI 172
Query: 255 LDLVSSGTTLRENNLKEIEGGVVLESQAVLVASRKSLIRRKGVLDATHEILERLEAHLRA 314
D+V SG TL +++L G + +S+AVL+ + + + +A +++ R++ +
Sbjct: 173 ADVVGSGRTLSQHDLVAF-GEPLCDSEAVLIERAGTDGQDQ--TEARDQLVARVQGVVFG 229
Query: 315 SGQFTVTANMRGNSAEEVAERILSQTSFSGLQGPT 349
+ + ++ ++ I GL+ PT
Sbjct: 230 QQYLMLDYDCPRSALKKATA-IT-----PGLESPT 258
>1ve4_A ATP phosphoribosyltransferase; riken structural genomics/proteomics
initiative structural genomics; 1.20A {Thermus
thermophilus} SCOP: c.94.1.1
Length = 206
Score = 175 bits (446), Expect = 5e-54
Identities = 65/236 (27%), Positives = 106/236 (44%), Gaps = 32/236 (13%)
Query: 80 ERDEIRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVR 139
R + + LP KGRM + ++LK L + +V + + + + + R KD+
Sbjct: 2 RRFALTVALP-KGRMFREAYEVLKRAGLDLPEVEGERTLLHGKEG-GVALLELRNKDVPI 59
Query: 140 KLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLREL 199
+ G ++G+VG D + + G DL D L +G CRLSL
Sbjct: 60 YVDLGIAEIGVVGKDVLLDSG---RDLFEPVD-LGFGACRLSLIRRPGDTGPI------- 108
Query: 200 AQMPQWTAEKPLRVATGFTYLGPKFMKDNGLK-HVVFSTADGALEAAPAMGIADAILDLV 258
RVAT + + +K+ G VV G +E A G+ADA++D+V
Sbjct: 109 -----------RRVATKYPNFTARLLKERGWAADVVEL--SGNIELAAVTGLADAVVDVV 155
Query: 259 SSGTTLRENNLKEIEGGVVLESQAVLVASRKSLIRRKGVLDATHEILERLEAHLRA 314
+G TLR L E+E V+ S A LV +R++L ++ VL +++RL +
Sbjct: 156 QTGATLRAAGLVEVE--VLAHSTARLVVNRQALKLKRAVLK---PLIQRLRELSGS 206
>2vd2_A ATP phosphoribosyltransferase; HISG, glycosyltransferase, histidine
biosynthes amino-acid biosynthesis; 2.85A {Bacillus
subtilis}
Length = 214
Score = 169 bits (431), Expect = 1e-51
Identities = 55/234 (23%), Positives = 106/234 (45%), Gaps = 32/234 (13%)
Query: 84 IRLGLPSKGRMAADTLDLLKDCQLSVKQV--NPRQYVAQIPQLSNLEVWFQRPKDIVRKL 141
+ + +P KGR+ + LL+ + + + R+ + +P+ NL +P D+ +
Sbjct: 6 LTMAMP-KGRIFEEAAGLLRQAGYRLPEEFEDSRKLIIDVPEE-NLRFILAKPMDVTTYV 63
Query: 142 LSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQ 201
G D+GI G D + E D+ V D L+ C L++A + +
Sbjct: 64 EHGVADVGIAGKDVMLEEE---RDVYEVLD-LNISKCHLAVAGLPNTDWSGVA------- 112
Query: 202 MPQWTAEKPLRVATGFTYLGPKFMKDNGLK-HVVFSTADGALEAAPAMGIADAILDLVSS 260
R+AT + + + ++ G + ++ +G++E AP +G+AD I+D+VS+
Sbjct: 113 ---------PRIATKYPNVASSYFREQGEQVEIIKL--NGSIELAPLIGLADRIVDIVST 161
Query: 261 GTTLRENNLKEIEGGVVLESQAVLVASRKSLIRRKGVLDATHEILERLEAHLRA 314
G TL+EN L E E + + + + + S + V+D E+ RL +
Sbjct: 162 GQTLKENGLVETE--HICDITSRFIVNPVSYRMKDDVID---EMASRLSLVVEG 210
>1o63_A ATP phosphoribosyltransferase; structural genomics; 2.00A
{Thermotoga maritima} SCOP: c.94.1.1 PDB: 1o64_A 1usy_E*
1usy_H*
Length = 219
Score = 168 bits (428), Expect = 4e-51
Identities = 50/234 (21%), Positives = 95/234 (40%), Gaps = 34/234 (14%)
Query: 84 IRLGLPSKGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLS 143
++L +P KGR+ + LK + + R+ ++ + RP D+ L+
Sbjct: 3 LKLAIP-KGRLEEKVMTYLKKTGVIFE----RESSILREGK-DIVCFMVRPFDVPTYLVH 56
Query: 144 GDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMP 203
G D+G G D + E LI + R+ LA PK
Sbjct: 57 GVADIGFCGTDVLLEKE---TSLIQPFF-IPTNISRMVLAGPKGRGIPEGE--------- 103
Query: 204 QWTAEKPLRVATGFTYLGPKFMKDNGLK-HVVFSTADGALEAAPAMGIADAILDLVSSGT 262
R+AT F + ++ + G ++ G++E AP G++D I+D+ +G
Sbjct: 104 -------KRIATKFPNVTQRYCESKGWHCRIIPL--KGSVELAPIAGLSDLIVDITETGR 154
Query: 263 TLRENNLKEIEGGVVLESQAVLVASRKSLIRRKGVLDATHEILERLEAHLRASG 316
TL+ENNL+ ++ + + +V + S ++ + LE+L+ +
Sbjct: 155 TLKENNLEILD--EIFVIRTHVVVNPVSYRTKREEVV---SFLEKLQEVIEHDS 203
>1z7m_E ATP phosphoribosyltransferase; ATP-PRT, histidine biosynthesis,
hiszg, alloste evolution; 2.90A {Lactococcus lactis}
SCOP: c.94.1.1 PDB: 1z7n_E*
Length = 208
Score = 166 bits (424), Expect = 1e-50
Identities = 54/230 (23%), Positives = 105/230 (45%), Gaps = 30/230 (13%)
Query: 84 IRLGLPSKGRMAADTLDLLKDCQLSVKQV--NPRQYVAQIPQLSNLEVWFQRPKDIVRKL 141
I++ + KGR+ LL++ V+ + R+ + +L++ F +P D++ L
Sbjct: 2 IKIAIT-KGRIQKQVTKLLENADYDVEPILNLGRELQIKTKD--DLQIIFGKPNDVITFL 58
Query: 142 LSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQ 201
G +D+G VG DT+ E +D + L G C +LA + ++
Sbjct: 59 EHGIVDIGFVGKDTLDE--NDFDDYYELLY-LKIGQCIFALASYP-----DFSNKNFQRH 110
Query: 202 MPQWTAEKPLRVATGFTYLGPKFMKDNGLK-HVVFSTADGALEAAPAMGIADAILDLVSS 260
R+A+ + + K+ ++ +G++E P +G+ADAI+D+V +
Sbjct: 111 K---------RIASKYPRVTKKYFAQKQEDIEIIKL--EGSVELGPVVGLADAIVDIVET 159
Query: 261 GTTLRENNLKEIEGGVVLESQAVLVASRKSLIRRKGVLDATHEILERLEA 310
G TL N L+ IE + + ++ ++ S +K + E++ERLE
Sbjct: 160 GNTLSANGLEVIE--KISDISTRMIVNKSSFKFKKDKII---EMVERLED 204
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.8 bits (134), Expect = 1e-08
Identities = 48/282 (17%), Positives = 92/282 (32%), Gaps = 72/282 (25%)
Query: 90 SKGRMAADTLDLLKDCQLSVKQVNPR--QYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLD 147
+G M +DL K + + + V R + S L++ P ++
Sbjct: 1628 EQG-MG---MDLYKTSK-AAQDVWNRADNHFKDTYGFSILDIVINNPVNL---------- 1672
Query: 148 LGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFENIN-SLRELAQMPQWT 206
T+ G+ + + + A+ + + IF+ IN +
Sbjct: 1673 -------TIHFGGEKGKRIRENYSAMIFETIVDGKLKTEK-IFKEINEHSTSYT----FR 1720
Query: 207 AEKPLRVATGFT--------YLGPKFMKDNGLKHVVFSTADG-------ALEAAPA--MG 249
+EK L AT FT + +K GL + A G AL A+ A M
Sbjct: 1721 SEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFA-GHSLGEYAAL-ASLADVMS 1778
Query: 250 IADAILDLVSS-GTTLRENNLKEIEGGVVLESQAVLVASRKSLIRRKGVLDATHEILERL 308
I + ++V G T++ + + S ++A + +A ++ER+
Sbjct: 1779 IESLV-EVVFYRGMTMQV----AVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERV 1833
Query: 309 EAHLRASGQFTVTANMRGNS------------AEEVAERILS 338
+ +G N N A + +L+
Sbjct: 1834 G---KRTGWLVEIVNY--NVENQQYVAAGDLRALDTVTNVLN 1870
Score = 43.5 bits (102), Expect = 8e-05
Identities = 62/368 (16%), Positives = 103/368 (27%), Gaps = 160/368 (43%)
Query: 17 CPSLSPSGLSFFCPLSS-----FHISVAS---GPTTATNKPAAAVTCCVSSSQQFESHVS 68
+ + S SFF + F I V P T+ P + + + +++ S +
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL--PPSILEDSLENNEGVPSPML 339
Query: 69 VVNGNIDNRISER-DEIRLGLPSKGRMAADTLDLLKDCQLSVKQVN-PRQYV-AQIPQ-L 124
++ ++ + ++ LP+ Q+ + VN + V + PQ L
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPA-------------GKQVEISLVNGAKNLVVSGPPQSL 386
Query: 125 SNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAI 184
L + RK + GLD Q R I
Sbjct: 387 YGLNLTL-------RKAKAPS------GLD------Q----------------SR----I 407
Query: 185 PKYGIFENINSLRELAQMPQWTAEKP------LRVATGF--TYLGP---KFMKDNGLKHV 233
P F S R K L VA+ F L P KD +V
Sbjct: 408 P----F----SER-----------KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV 448
Query: 234 ----------VFSTADGALEAAPAMGIADAILDLVSSGTTLRENNLKEIEGGVVLESQAV 283
V+ T DG+ +L+ + G +
Sbjct: 449 SFNAKDIQIPVYDTFDGS--------------------------DLRVLSGSISER---- 478
Query: 284 LVASRKSLIRRKGV-------LDATHEILE----------RLEAHLR-ASGQFTVTA-NM 324
+V I R V ATH IL+ L + +G + A +
Sbjct: 479 IV----DCIIRLPVKWETTTQFKATH-ILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTL 533
Query: 325 RGNSAEEV 332
N ++
Sbjct: 534 DINPDDDY 541
Score = 42.0 bits (98), Expect = 3e-04
Identities = 57/287 (19%), Positives = 91/287 (31%), Gaps = 98/287 (34%)
Query: 8 LFL-----QPYFRQCPSLSPSGLSFFCPLSSFHISVASGPTTATNKPAAAVTCCVSSSQQ 62
LF + SL PS L S+ + + P +++ + +Q
Sbjct: 303 LFFIGVRCYEAYPNT-SLPPSILE---------DSLENNEGVPS--PMLSISNL--TQEQ 348
Query: 63 FESHV---------------SVVNGNIDNR-ISERDEIRLGLPSKGRMAADTLDLLKDCQ 106
+ +V S+VNG N +S G P +L L +
Sbjct: 349 VQDYVNKTNSHLPAGKQVEISLVNGA-KNLVVS-------GPPQ-------SLYGL-NLT 392
Query: 107 LSVKQVNPRQYVAQIPQLSNLEVWF-QR-PKDIVR----------KLLSGDLDLGIVGLD 154
L + ++IP F +R K R LL DL L
Sbjct: 393 LRKAKAPSGLDQSRIP--------FSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLV 444
Query: 155 TVSEFGQGNEDLII-VHDALDYGDCR-LSLAIPKYGIFENINSLRELAQMP-QWTAEKPL 211
+ +D+ I V+D D D R LS +I E I + + ++P +W
Sbjct: 445 KNNVSFNA-KDIQIPVYDTFDGSDLRVLSGSIS-----ERI--VDCIIRLPVKWETTTQF 496
Query: 212 RVATGFTYLGP-------KFMKDN----GLKHVVFSTADGALEAAPA 247
+ AT GP N G+ V+ + G L+ P
Sbjct: 497 K-ATHILDFGPGGASGLGVLTHRNKDGTGV-RVIVA---GTLDINPD 538
Score = 39.3 bits (91), Expect = 0.002
Identities = 65/371 (17%), Positives = 117/371 (31%), Gaps = 91/371 (24%)
Query: 1 MSVSSASLFLQPYFRQCPSLSPSGLSFFCP-LSSFHISVASGPTTAT---NKPAAAVTCC 56
+++S SL + L P+ F L + PT ++P
Sbjct: 9 LTLSHGSL-------EHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV 61
Query: 57 VSSSQQFESHVS-VVNGNIDNRISERDEI-RLGLPS------KGR---MAADTLDLLKDC 105
+F +VS +V +++ + D++ L L +G A L D
Sbjct: 62 G----KFLGYVSSLVE---PSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT 114
Query: 106 QLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEF-GQGN- 163
L + + Y+ ++ + + R + G+ L V+ F GQGN
Sbjct: 115 TLVKTKELIKNYITAR-IMAKRPFDKKSNSALFRAVGEGNAQL-------VAIFGGQGNT 166
Query: 164 ----EDLIIVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTY 219
E+L ++ Y L I + +L EL + AEK G
Sbjct: 167 DDYFEELRDLYQ--TYHVLVGDL------IKFSAETLSELIRTTL-DAEKVF--TQGLNI 215
Query: 220 L----GPKFMKDNG-LKHVVFSTADGALEAAPAMGIADA---ILDLVSSGTTLRENNLKE 271
L P D L + S P +G+ ++ G T E L+
Sbjct: 216 LEWLENPSNTPDKDYLLSIPIS--------CPLIGVIQLAHYVVTAKLLGFTPGE--LRS 265
Query: 272 IEGGVVLESQAVLVA-------SRKSLIRRKGVLDATHEILERL-----EAHLRASGQFT 319
G SQ ++ A S +S + + + L + A +
Sbjct: 266 YLKGATGHSQGLVTAVAIAETDSWESF------FVSVRKAITVLFFIGVRCY-EAYPNTS 318
Query: 320 VTANMRGNSAE 330
+ ++ +S E
Sbjct: 319 LPPSILEDSLE 329
Score = 38.9 bits (90), Expect = 0.003
Identities = 25/126 (19%), Positives = 36/126 (28%), Gaps = 51/126 (40%)
Query: 55 CCVSSSQQFESHVSVVN--GNIDNRISERDEIRLGLPSKGRMAADTLDLLKDCQLSVKQV 112
++ ES V VV G RDE S M A +
Sbjct: 1771 ASLADVMSIESLVEVVFYRGMTMQVAVPRDE---LGRSNYGMIA---------------I 1812
Query: 113 NP------------RQYVAQIPQLSNLEVW---F-----QRPKDIVRKLLSGDLDLGIVG 152
NP + V ++ + + V + Q V +GDL
Sbjct: 1813 NPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQ----YV---AAGDL----RA 1861
Query: 153 LDTVSE 158
LDTV+
Sbjct: 1862 LDTVTN 1867
Score = 35.8 bits (82), Expect = 0.027
Identities = 32/223 (14%), Positives = 58/223 (26%), Gaps = 72/223 (32%)
Query: 168 IVHDALDYGDCRLSLAIPKYGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKD 227
D + D YG S+ ++ P+ + F K +++
Sbjct: 1641 AAQDVWNRADNHFK---DTYGF-----SILDIVI------NNPVNLTIHFGGEKGKRIRE 1686
Query: 228 NGLKHVVFSTADGALEAAPAMGIAD-----------------------AILDLVSSGTT- 263
N + + DG L+ + A+ L+
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT-LMEKAAFE 1745
Query: 264 -LRENNLKEI----------E-------GGVV-LESQAVLVASRKSLIRRKGVLDATHEI 304
L+ L E V+ +ES +V R G
Sbjct: 1746 DLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYR-------G--MTMQVA 1796
Query: 305 LERLEAHLRASGQF-----TVTANMRGNSAEEVAERILSQTSF 342
+ R E G V A+ + + V ER+ +T +
Sbjct: 1797 VPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGW 1839
Score = 32.3 bits (73), Expect = 0.30
Identities = 16/98 (16%), Positives = 41/98 (41%), Gaps = 23/98 (23%)
Query: 36 ISVASGPTTATNKPAAAVTCCVSSSQQFESHVSVVNGNIDNR---ISERDEIRLGLPSKG 92
I++ G A+ A ++ V +VN N++N+ + G
Sbjct: 1810 IAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAA------------G 1857
Query: 93 RMAA-DTL-DLLKDCQLSVKQVNPRQYVAQIPQLSNLE 128
+ A DT+ ++L + +++++ + ++ + +LE
Sbjct: 1858 DLRALDTVTNVLN--FIKLQKID----IIELQKSLSLE 1889
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function;
2.00A {Candida albicans} PDB: 2x7p_A
Length = 321
Score = 42.0 bits (98), Expect = 2e-04
Identities = 32/226 (14%), Positives = 83/226 (36%), Gaps = 31/226 (13%)
Query: 134 PKDIVRKLLSGDLDLGIVGLD-TVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYGIFEN 192
++ L S ++D+ I + +++ +GNE++ ++ Y L A+ ++
Sbjct: 55 SGRLINLLNSNEVDIAIGLTEAFIADIAKGNENIHVL---DTYVKSPLLWAVSTGSNRDD 111
Query: 193 INSLRELAQMPQWTAEKPL---RVATGFTYLGPKFMKDNGL----KHVVFSTADGALEAA 245
+ ++L K + R+ +G + G+ + V S ++
Sbjct: 112 VTDAKQL---------KRIGVSRIGSGSYVMSFVLAHQLGVPSFDQFQVLSNFKNLRDSV 162
Query: 246 PAMGIADAI----LDLVSSGTTLRENNLKEIEGGVVLESQAVLVASRKSLIRR----KGV 297
+ + +S + +K+I+ S V+ S SL + K
Sbjct: 163 NLKDGVEGSDAFMWEYFTSKKYYDNHEIKQIDQIYTPWSSWVVATSSDSLQAKSDVIKNF 222
Query: 298 LDATHEILERLEAHLRASGQFTVTANMRGNSAEEVAERILSQTSFS 343
+DA ++ ++ H+ + ++ + + + E A+ F+
Sbjct: 223 IDAVNQGIQYYNEHVDEAIEYISS---NLDYSAEDAKEWTKTVEFN 265
>3qsl_A Putative exported protein; unknown, structural genomics,
PSI-biology, midwest center FO structural genomics,
MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella
bronchiseptica}
Length = 346
Score = 38.7 bits (90), Expect = 0.002
Identities = 30/228 (13%), Positives = 62/228 (27%), Gaps = 44/228 (19%)
Query: 129 VWFQRPKDIVRKLLSGDLDLGIVGLD-TVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKY 187
F ++ ++ G D+ + T+S +G
Sbjct: 69 ADFAGGSKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAFALQGRAPMIGVGVSKKNLP 128
Query: 188 GIFENINSLRELAQMPQWTAEKPLRVATGF-----TYLGPKFMKDNGLK----HVVFSTA 238
G +L K ++ + F+ +GLK + A
Sbjct: 129 GYK----GPADL---------KGRKIGVTAPGSSTNMVVNFFLAKHGLKASDVSFIGVGA 175
Query: 239 DGALEAAPAMGIADAILDLVSSGTTLRENNLKEIEGGVVLESQAVLVASRKSLIRRK--G 296
A G DAI + + L + ++ L +++ G
Sbjct: 176 GAGAVTALRSGQIDAISNTDPVVSMLETSG-----DIQIIVDTRTLKDTKEIFGGNMPAG 230
Query: 297 VLDATHEILER--------LEAHLRASGQFTVTANMRGNSAEEVAERI 336
L A ++ A +RA ++ A+E+A+ +
Sbjct: 231 CLYAPQAFVDANPNTAQALTNAIVRA------DKWIQKAGADEIAKAV 272
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA;
structural genomics; 2.60A {Methylobacillus flagellatus}
Length = 348
Score = 32.2 bits (73), Expect = 0.25
Identities = 42/283 (14%), Positives = 78/283 (27%), Gaps = 44/283 (15%)
Query: 82 DEIRLGLPS---KGRMAADTLDLLKDCQLSVKQVNPRQYVAQIPQLSNLEVWFQRPKDIV 138
+R+ + G+ L +++ + + + I
Sbjct: 6 KVVRIASVATNVGGKTVYAGSASLVVNGAFPEELRKQGIKVEWVPAAM----ASVGPVIN 61
Query: 139 RKLLSGDLDLGIVGLDTVSEFGQGN-EDLIIVHDALDYGDCRLSLAIPKYGIFENINSLR 197
SG +D GI G D + + +V A L +PK S++
Sbjct: 62 EGFASGKIDFGIYG-DLPPIILNASKPTVQLV--APWGTTSNSYLVVPKNS---TAKSIK 115
Query: 198 ELAQMPQWTAEKPLRVATGF----TYLGPKFMKDNGLK----HVVF-STADGALEAAPAM 248
+L K ++A ++ GL +V + GA AA A
Sbjct: 116 DL---------KGKKIALHRGRPWELAFSNLLQSEGLTFKDFKIVNVNPQVGA--AALAS 164
Query: 249 GIADAILDLVSSGTTLRENNLKEI----EGGVVLESQAVLVASRKSLIRR----KGVLDA 300
G D L S K I V + + A + + + ++ A
Sbjct: 165 GTVDGFFSLFDSYILEDRGVGKIIWSTKTAPVDWKLMGGVWARNDFVKQNPEITQAIVTA 224
Query: 301 THEILERLEAHLRASGQFTVTANMRGNSAEEVAERILSQTSFS 343
+ + + + E V R Q + S
Sbjct: 225 YLKSVHWVAQDENKETY--IREYSNKIYPESVNRREYDQDNVS 265
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine
biosynthesis, transcription regulation; 1.80A
{Klebsiella aerogenes} SCOP: c.94.1.1
Length = 324
Score = 31.0 bits (71), Expect = 0.45
Identities = 37/231 (16%), Positives = 72/231 (31%), Gaps = 40/231 (17%)
Query: 115 RQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALD 174
+ ++ + P++S L + P I + G+ D I D +++
Sbjct: 113 KGFIERYPRVS-LHMHQGSPTQIAEAVSKGNADFAIATE------ALHLYDDLVMLPCYH 165
Query: 175 YGDCRLSLAIPK---YGIFENINSLRELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLK 231
+ S+ + ++ S+ ELAQ P T GL
Sbjct: 166 W---NRSIVVTPEHPLATKGSV-SIEELAQYPLVT----YTFGFTGRSELDTAFNRAGLT 217
Query: 232 -HVVFSTADGALEAAPAMGIADAILDLVSSG---TTLRENNLKEIEGG--VVLESQAVLV 285
+VF+ D AD I V G + + + V L++ +
Sbjct: 218 PRIVFTATD-----------ADVIKTYVRLGLGVGVIASMAVDPVSDPDLVKLDANGIFS 266
Query: 286 ASRKSLIRRKGVL--DATHEILERLEAHLRASGQFTVTANMRGNSAEEVAE 334
S + R+ ++ ++R HL V + S E++
Sbjct: 267 HSTTKIGFRRSTFLRSYMYDFIQRFAPHLTRD---VVDTAVALRSNEDIEA 314
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family,
cofactor-binding DO cysteine biosynthesis; 2.80A
{Escherichia coli K12} SCOP: c.94.1.1
Length = 228
Score = 30.7 bits (70), Expect = 0.54
Identities = 42/215 (19%), Positives = 74/215 (34%), Gaps = 49/215 (22%)
Query: 115 RQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALD 174
+ + P++ LE+ P++I L +G+ D+GI SE + L+
Sbjct: 34 KAFRELFPEVR-LELIQGTPQEIATLLQNGEADIGI-----ASERLSNDPQLVAFPWFRW 87
Query: 175 YGDCRLSLAIPK---YGIFENINSLRELAQMPQWTAEKPLRVATGFTY--LGPKFMKDNG 229
SL +P + +L +A+ P T + G T G
Sbjct: 88 ----HHSLLVPHDHPLTQISPL-TLESIAKWPLITYRQ------GITGRSRIDDAFARKG 136
Query: 230 LK-HVVFSTADGALEAAPAMGIADAILDLVSSG--------TTLRENNLKEIEGG-VVLE 279
L +V S D +D I V+ G + E + E + L+
Sbjct: 137 LLADIVLSAQD-----------SDVIKTYVALGLGIGLVAEQSSGE----QEEENLIRLD 181
Query: 280 SQAVLVASRKSLIRRKGVL--DATHEILERLEAHL 312
++ + A+ L ++G L + LE A L
Sbjct: 182 TRHLFDANTVWLGLKRGQLQRNYVWRFLELCNAGL 216
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein,
hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20
Length = 94
Score = 29.0 bits (66), Expect = 0.66
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 219 YLGPKFMKDNGLKHVVFSTADGAL 242
+L PK ++ N LK + D A+
Sbjct: 15 HLLPKQIERNALKKGELTVDDSAI 38
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics,
joint center for struc genomics, JCSG, protein structure
initiative; 1.75A {Parabacteroides distasonis}
Length = 283
Score = 30.7 bits (69), Expect = 0.66
Identities = 20/231 (8%), Positives = 58/231 (25%), Gaps = 41/231 (17%)
Query: 129 VWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVHDALDYGDCRLSLAIPKYG 188
P L+ + D+ ++ + + + + P +G
Sbjct: 38 KVVDSPDLAQALLIKQETDIAVLPMINAANLYNKGIKIKLA-------------GCPIWG 84
Query: 189 IFENINSLRELAQMPQWTAEKPLRVATGFT-----YLGPKFMKDNGLKHVVFSTADGALE 243
+ L K + L ++ L + + + A E
Sbjct: 85 TL-YLVEKTPL---------KEPALYVFGNGTTPDILTRYYLGRQRLDYPLNYAFNTAGE 134
Query: 244 AAPAM--GIADAIL-------DLVSSGTTLREN-NLKEIEGGVVLESQAVLVASRKSLIR 293
+ G + + + ++LR +L + L V ++ +
Sbjct: 135 ITQGILAGKVNRAVLGEPFLSIALRKDSSLRITADLNHLTDNDTLGFAQTAVVYTPTMEK 194
Query: 294 -RKGVLDATHEILERLEAHLRASGQFTVTANMRGNSAEEVAERILSQTSFS 343
R DA ++ + + + + + + + +
Sbjct: 195 YRIAFEDALRASCQKAVRYPKETIHSLEEHG--IFAQGALTPKSIERCKIY 243
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.81
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 10/34 (29%)
Query: 225 MK--DNGLKHVVFSTADGALEAAPAMGIADAILD 256
+K LK ++ A ++APA+ I A ++
Sbjct: 22 LKKLQASLK--LY-----ADDSAPALAI-KATME 47
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.8 bits (67), Expect = 1.7
Identities = 18/103 (17%), Positives = 29/103 (28%), Gaps = 19/103 (18%)
Query: 234 VFSTADGALEAAPAMGIADAILDLVSSGTTLRENNLKEIEGGVVLESQAVLVASRKSLIR 293
+ D + PA G TT RE++ L + R+ + R
Sbjct: 1208 AATATDKIGRSVPAPGKGIL--------TTAREHHSSVKYASPNLNMK---YRKRQLVTR 1256
Query: 294 RKGVLDATHEILERLEAHLRASGQFTVTANMRGNSAEEVAERI 336
+ D LE L+ + E + ER
Sbjct: 1257 EAQIKDWVENELEALKLE--------AEEIPSEDQNEFLLERT 1291
>3ku3_A Hemagglutinin HA1 chain; viral envelope protein, viral fusion
protein, protein, viral protein; HET: NAG; 1.60A
{Influenza a virus} PDB: 3qqb_A* 3qqe_A* 3qqo_A* 3ku6_A*
3ku5_A* 1jsm_A* 1jsn_A* 1jso_A* 3qqi_A*
Length = 327
Score = 29.3 bits (65), Expect = 1.9
Identities = 15/111 (13%), Positives = 35/111 (31%), Gaps = 11/111 (9%)
Query: 111 QVNPRQYVAQIPQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGLDTVSEFGQGNEDLIIVH 170
++ R V D + +G ++ + + + I+
Sbjct: 213 EIATRPKVNGQGGRMEFSWTLLDMWDTINFESTG----NLIAPEYGFKISKRGSSGIMKT 268
Query: 171 DALDYGDCRLSLAIPKYGI-----FENINSLRELAQMPQWTAEKPLRVATG 216
+ +C P I F N++ + + P++ + L +ATG
Sbjct: 269 E-GTLENCETKCQTPLGAINTTLPFHNVHP-LTIGECPKYVKSEKLVLATG 317
>3ubq_A Hemagglutinin HA1; viral envelope protein, viral fusion protein,
protein-immune system complex; HET: NAG SIA GAL; 2.00A
{Influenza a virus} PDB: 3ubj_A* 3ubn_A* 3ube_A* 3lzg_A*
3ztn_A* 3al4_A* 3lyj_A* 3m6s_A* 4f3z_A* 3gbn_A* 3lzf_A*
3r2x_A* 4eef_A* 1ruy_H* 1rd8_A* 1rvt_H* 1rv0_H* 2wrg_H*
1ruz_H* 3hto_A* ...
Length = 329
Score = 28.2 bits (62), Expect = 4.5
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 168 IVHDALDYGDCRLSLAIPKYGI-----FENINSLRELAQMPQWTAEKPLRVATG 216
I+ DC + PK I F+NI+ + + P++ LR+ATG
Sbjct: 267 IIISDTPVHDCNTTCQTPKGAINTSLPFQNIHP-ITIGKCPKYVKSTKLRLATG 319
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional
regulator LYSR struc genomics, PSI-2, protein structure
initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Length = 238
Score = 27.6 bits (62), Expect = 6.2
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 135 KDIVRKLLSGDLDLGIVGLDTVSE 158
+ I L +LD+GI S
Sbjct: 69 EKIEDMLCRDELDVGIAFAPVHSP 92
>2wm3_A NMRA-like family domain containing protein 1; unknown function;
HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A*
3dxf_A 3e5m_A
Length = 299
Score = 27.3 bits (61), Expect = 6.7
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 226 KDNGLKHVVFSTADGALEAAP 246
+ GL +VV+S + +
Sbjct: 103 RRLGLHYVVYSGLENIKKLTA 123
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio
regulation; 1.58A {Porphyromonas gingivalis}
Length = 232
Score = 26.9 bits (60), Expect = 8.2
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 122 PQLSNLEVWFQRPKDIVRKLLSGDLDLGIVGL 153
L + V + + LLSG++D+ I+
Sbjct: 38 AGL-EIHVSEMQTSRCLASLLSGEIDMAIIAS 68
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase,
nucleotide-binding, Pro serine protease, stress
response; HET: ADP; 3.40A {Bacillus subtilis} PDB:
1x37_A
Length = 543
Score = 27.5 bits (62), Expect = 9.0
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 198 ELAQMPQWTAEKPLRVATGFTYLGPKFMKDNGLKHVVFSTADGALE 243
E+ + +T + L + +L PK +K++GLK D A+
Sbjct: 246 EIINIAGYTEIEKLEIVK--DHLLPKQIKEHGLKKSNLQLRDQAIL 289
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.378
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,203,350
Number of extensions: 322227
Number of successful extensions: 818
Number of sequences better than 10.0: 1
Number of HSP's gapped: 780
Number of HSP's successfully gapped: 37
Length of query: 349
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 255
Effective length of database: 4,077,219
Effective search space: 1039690845
Effective search space used: 1039690845
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.4 bits)