BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018857
(349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FLI|A Chain A, Human Metap1 With Bengamide Analog Y16, In Mn Form
pdb|4FLJ|A Chain A, Human Metap1 With Bengamide Analog Y08, In Mn Form
pdb|4FLK|A Chain A, Human Metap1 With Bengamide Analog Y10, In Mn Form
pdb|4FLL|A Chain A, Human Metap1 With Bengamide Analog Yz6, In Mn Form
Length = 326
Score = 286 bits (732), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 138/230 (60%), Positives = 171/230 (74%), Gaps = 3/230 (1%)
Query: 96 FDWTGTLRP-YPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIK--TPDQIERMR 152
+ +TG LRP YP+ VP+YI+ PD+A E L+ +IK + + IE MR
Sbjct: 2 YRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMR 61
Query: 153 ETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEV 212
CR+AREVLD AA MI+PGVTT+EID VH A I YPSPLNY+ FPKSCCTSVNEV
Sbjct: 62 LVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEV 121
Query: 213 ICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAI 272
ICHGIPD R L++GDIVN+D+T+Y G HGDLNET+FVG D+ +R+LVQ TYECL +AI
Sbjct: 122 ICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAI 181
Query: 273 SIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHYS 322
VKPGVR+RE+G +I +HA +GFSVV+SYCGHGI +LFH APN+PHY+
Sbjct: 182 DAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYA 231
>pdb|2B3H|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
I With A Third Cobalt In The Active Site
pdb|2B3K|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
I In The Holo Form
pdb|2B3L|A Chain A, Crystal Structure Of Type I Human Methionine
Aminopeptidase In The Apo Form
pdb|2GZ5|A Chain A, Human Type 1 Methionine Aminopeptidase In Complex With
Ovalicin At 1.1 Ang
pdb|2NQ6|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
1 In Complex With
3-Tert-Butoxycarbonylaminopyridine-2-Carboxylic Acid
Thiazole-2- Ylamide
pdb|2NQ7|A Chain A, Crystal Structure Of Type 1 Human Methionine
Aminopeptidase In Complex With
3-(2,2-Dimethylpropionylamino)pyridine-2-Carboxylic Acid
Thiazole-2-Ylamide
Length = 329
Score = 285 bits (730), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 138/230 (60%), Positives = 171/230 (74%), Gaps = 3/230 (1%)
Query: 96 FDWTGTLRP-YPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIK--TPDQIERMR 152
+ +TG LRP YP+ VP+YI+ PD+A E L+ +IK + + IE MR
Sbjct: 26 YRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMR 85
Query: 153 ETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEV 212
CR+AREVLD AA MI+PGVTT+EID VH A I YPSPLNY+ FPKSCCTSVNEV
Sbjct: 86 LVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEV 145
Query: 213 ICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAI 272
ICHGIPD R L++GDIVN+D+T+Y G HGDLNET+FVG D+ +R+LVQ TYECL +AI
Sbjct: 146 ICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAI 205
Query: 273 SIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHYS 322
VKPGVR+RE+G +I +HA +GFSVV+SYCGHGI +LFH APN+PHY+
Sbjct: 206 DAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYA 255
>pdb|2G6P|A Chain A, Crystal Structure Of Truncated (Delta 1-89) Human
Methionine Aminopeptidase Type 1 In Complex With Pyridyl
Pyrimidine Derivative
Length = 304
Score = 285 bits (730), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 138/230 (60%), Positives = 171/230 (74%), Gaps = 3/230 (1%)
Query: 96 FDWTGTLRP-YPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIK--TPDQIERMR 152
+ +TG LRP YP+ VP+YI+ PD+A E L+ +IK + + IE MR
Sbjct: 1 YRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMR 60
Query: 153 ETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEV 212
CR+AREVLD AA MI+PGVTT+EID VH A I YPSPLNY+ FPKSCCTSVNEV
Sbjct: 61 LVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEV 120
Query: 213 ICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAI 272
ICHGIPD R L++GDIVN+D+T+Y G HGDLNET+FVG D+ +R+LVQ TYECL +AI
Sbjct: 121 ICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAI 180
Query: 273 SIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHYS 322
VKPGVR+RE+G +I +HA +GFSVV+SYCGHGI +LFH APN+PHY+
Sbjct: 181 DAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYA 230
>pdb|3S6B|A Chain A, Crystal Structure Of Methionine Aminopeptidase 1b From
Plasmodium Falciparum, Pf10_0150
Length = 368
Score = 247 bits (630), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 113/230 (49%), Positives = 161/230 (70%), Gaps = 3/230 (1%)
Query: 95 HFDWTGTLRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRET 154
+F +TG +RP+P+S VP++IE PD+A+ P+ E + + + ++I+R+RE
Sbjct: 56 NFKFTGDVRPWPLSKINHVPSHIERPDYAISSIPESELIYKRKSDIYVNNEEEIQRIREA 115
Query: 155 CRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVIC 214
C + R+ LD A ++ PGVTTDEIDR VHE I YPS LNY+ FPKSCCTSVNE++C
Sbjct: 116 CILGRKTLDYAHTLVSPGVTTDEIDRKVHEFIIKNNAYPSTLNYYKFPKSCCTSVNEIVC 175
Query: 215 HGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEA---SRQLVQCTYECLEKA 271
HGIPD R L+ GDI+NID++V+YKGVH DLNETYFVG+ ++ ++LV+ Y L +A
Sbjct: 176 HGIPDYRPLKSGDIINIDISVFYKGVHSDLNETYFVGDINDVPKEGKELVETCYFSLMEA 235
Query: 272 ISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHY 321
I KPG+ ++ IG +I+ + + FSVV+SY GHG+G+LFH P +PH+
Sbjct: 236 IKKCKPGMFYKNIGTLIDAYVSKKNFSVVRSYSGHGVGKLFHSNPTVPHF 285
>pdb|4FUK|A Chain A, Aminopeptidase From Trypanosoma Brucei
pdb|4FUK|B Chain B, Aminopeptidase From Trypanosoma Brucei
Length = 337
Score = 236 bits (602), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 121/255 (47%), Positives = 164/255 (64%), Gaps = 14/255 (5%)
Query: 96 FDWTGTLRPYPISSKLTVPAYIELPDWA-LDGTPKVEPNSDLQHVVEI----------KT 144
FD+TG LRP I+ + VP++I PD+A G D V++ K
Sbjct: 6 FDFTGPLRPGKITPRRAVPSHILRPDYADRAGGVSASEEKDRGSKVKVYNIQFLHDDSKK 65
Query: 145 PDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKS 204
+I+R++ C+++REVLD A +PG+TTDE+DR+VHEAT+ YPSPLNY+ FPKS
Sbjct: 66 TAEIQRIKTVCQLSREVLDIATAAAKPGITTDELDRIVHEATVERNMYPSPLNYYGFPKS 125
Query: 205 CCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCT 264
CTSVNEVICHGIPDSR+LE+GDI+NIDV+ Y G HGDLNET F+G D+ S +LV
Sbjct: 126 VCTSVNEVICHGIPDSRELEEGDILNIDVSSYLNGFHGDLNETVFIGRPDDDSVRLVHAA 185
Query: 265 YECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHYS-- 322
YECL I +VKP ++++G+ I A+ SVV++Y GHG+G LFH +P + HY+
Sbjct: 186 YECLCAGIGVVKPEALYKQVGDAIEACASQYQCSVVRTYTGHGVGHLFHTSPTVCHYANN 245
Query: 323 -SLYHAFQPHIFYIQ 336
SL H+F I+
Sbjct: 246 KSLGMMRPGHVFTIE 260
>pdb|3IU7|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Mn
Inhibitor A02
pdb|3IU8|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T03
pdb|3IU9|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T07
Length = 288
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 104/220 (47%), Positives = 132/220 (60%), Gaps = 6/220 (2%)
Query: 102 LRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREV 161
L P +S VP +I P++ G P + S+ ++TP+ IE+MR RIA
Sbjct: 10 LSPGVLSPTRPVPNWIARPEYV--GKPAAQEGSEPW----VQTPEVIEKMRVAGRIAAGA 63
Query: 162 LDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSR 221
L A + + PGVTTDE+DR+ HE + G YPS L Y FPKSCCTS+NEVICHGIPDS
Sbjct: 64 LAEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDST 123
Query: 222 KLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRF 281
+ DGDIVNIDVT Y GVHGD N T+ G+ + R LV T E +AI+ VKPG
Sbjct: 124 VITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRAL 183
Query: 282 REIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHY 321
IG VI +A G++VV+ + GHGIG FH + HY
Sbjct: 184 SVIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHY 223
>pdb|1Y1N|A Chain A, Identification Of Sh3 Motif In M. Tuberculosis Methionine
Aminopeptidase Suggests A Mode Of Interaction With The
Ribosome
pdb|1YJ3|A Chain A, Crystal Structure Analysis Of Product Bound Methionine
Aminopeptidase Type 1c From Mycobacterium Tuberculosis
Length = 291
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 104/220 (47%), Positives = 132/220 (60%), Gaps = 6/220 (2%)
Query: 102 LRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREV 161
L P +S VP +I P++ G P + S+ ++TP+ IE+MR RIA
Sbjct: 13 LSPGVLSPTRPVPNWIARPEYV--GKPAAQEGSEPW----VQTPEVIEKMRVAGRIAAGA 66
Query: 162 LDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSR 221
L A + + PGVTTDE+DR+ HE + G YPS L Y FPKSCCTS+NEVICHGIPDS
Sbjct: 67 LAEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDST 126
Query: 222 KLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRF 281
+ DGDIVNIDVT Y GVHGD N T+ G+ + R LV T E +AI+ VKPG
Sbjct: 127 VITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRAL 186
Query: 282 REIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHY 321
IG VI +A G++VV+ + GHGIG FH + HY
Sbjct: 187 SVIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHY 226
>pdb|3PKA|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y02, In Mn
Form
pdb|3PKB|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y16, In Mn
Form
pdb|3PKC|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y08, In Mn
Form
pdb|3PKD|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Mn
Form
pdb|3PKE|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Ni
Form
Length = 285
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 104/220 (47%), Positives = 132/220 (60%), Gaps = 6/220 (2%)
Query: 102 LRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREV 161
L P +S VP +I P++ G P + S+ ++TP+ IE+MR RIA
Sbjct: 7 LSPGVLSPTRPVPNWIARPEYV--GKPAAQEGSEPW----VQTPEVIEKMRVAGRIAAGA 60
Query: 162 LDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSR 221
L A + + PGVTTDE+DR+ HE + G YPS L Y FPKSCCTS+NEVICHGIPDS
Sbjct: 61 LAEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDST 120
Query: 222 KLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRF 281
+ DGDIVNIDVT Y GVHGD N T+ G+ + R LV T E +AI+ VKPG
Sbjct: 121 VITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRAL 180
Query: 282 REIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHY 321
IG VI +A G++VV+ + GHGIG FH + HY
Sbjct: 181 SVIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHY 220
>pdb|3ROR|A Chain A, Crystal Structure Of C105s Mutant Of Mycobacterium
Tuberculosis Methionine Aminopeptidase
Length = 291
Score = 194 bits (492), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 103/220 (46%), Positives = 131/220 (59%), Gaps = 6/220 (2%)
Query: 102 LRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREV 161
L P +S VP +I P++ G P + S+ ++TP+ IE+MR RIA
Sbjct: 13 LSPGVLSPTRPVPNWIARPEYV--GKPAAQEGSEPW----VQTPEVIEKMRVAGRIAAGA 66
Query: 162 LDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSR 221
L A + + PGVTTDE+DR+ HE + G YPS L Y FPKSC TS+NEVICHGIPDS
Sbjct: 67 LAEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCSTSLNEVICHGIPDST 126
Query: 222 KLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRF 281
+ DGDIVNIDVT Y GVHGD N T+ G+ + R LV T E +AI+ VKPG
Sbjct: 127 VITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRAL 186
Query: 282 REIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHY 321
IG VI +A G++VV+ + GHGIG FH + HY
Sbjct: 187 SVIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHY 226
>pdb|1C27|A Chain A, E. Coli Methionine Aminopeptidase:norleucine Phosphonate
Complex
pdb|1C21|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Complex
pdb|1C22|A Chain A, E. Coli Methionine Aminopeptidase: Trifluoromethionine
Complex
pdb|1C23|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphonate
Complex
pdb|1C24|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphinate
Complex
Length = 263
Score = 177 bits (449), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 89/186 (47%), Positives = 118/186 (63%), Gaps = 2/186 (1%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNY 198
+ IKTP+ IE+MR R+A EVL+ ++PGV+T E+DR+ ++ + S L Y
Sbjct: 2 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 61
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKL-EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEAS 257
H +PKS C S+NEV+CHGIPD KL +DGDIVNIDVTV G HGD ++ + VG
Sbjct: 62 HGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMG 121
Query: 258 RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPN 317
+L + T E L A+ +VKPG+ REIG I + GFSVV+ YCGHGIG+ FH P
Sbjct: 122 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQ 181
Query: 318 IPHYSS 323
+ HY S
Sbjct: 182 VLHYDS 187
>pdb|3MAT|A Chain A, E.coli Methionine Aminopeptidase Transition-state
Inhibitor Complex
Length = 265
Score = 177 bits (448), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 89/186 (47%), Positives = 118/186 (63%), Gaps = 2/186 (1%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNY 198
+ IKTP+ IE+MR R+A EVL+ ++PGV+T E+DR+ ++ + S L Y
Sbjct: 3 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 62
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKL-EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEAS 257
H +PKS C S+NEV+CHGIPD KL +DGDIVNIDVTV G HGD ++ + VG
Sbjct: 63 HGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMG 122
Query: 258 RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPN 317
+L + T E L A+ +VKPG+ REIG I + GFSVV+ YCGHGIG+ FH P
Sbjct: 123 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQ 182
Query: 318 IPHYSS 323
+ HY S
Sbjct: 183 VLHYDS 188
>pdb|4MAT|A Chain A, E.Coli Methionine Aminopeptidase His79ala Mutant
Length = 278
Score = 177 bits (448), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 89/186 (47%), Positives = 118/186 (63%), Gaps = 2/186 (1%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNY 198
+ IKTP+ IE+MR R+A EVL+ ++PGV+T E+DR+ ++ + S L Y
Sbjct: 3 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 62
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKL-EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEAS 257
H +PKS C S+NEV+CHGIPD KL +DGDIVNIDVTV G HGD ++ + VG
Sbjct: 63 HGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMG 122
Query: 258 RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPN 317
+L + T E L A+ +VKPG+ REIG I + GFSVV+ YCGHGIG+ FH P
Sbjct: 123 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQ 182
Query: 318 IPHYSS 323
+ HY S
Sbjct: 183 VLHYDS 188
>pdb|2MAT|A Chain A, E.Coli Methionine Aminopeptidase At 1.9 Angstrom
Resolution
pdb|1YVM|A Chain A, E. Coli Methionine Aminopeptidase In Complex With
Thiabendazole
pdb|4A6W|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
Length = 264
Score = 177 bits (448), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 89/186 (47%), Positives = 118/186 (63%), Gaps = 2/186 (1%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNY 198
+ IKTP+ IE+MR R+A EVL+ ++PGV+T E+DR+ ++ + S L Y
Sbjct: 3 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 62
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKL-EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEAS 257
H +PKS C S+NEV+CHGIPD KL +DGDIVNIDVTV G HGD ++ + VG
Sbjct: 63 HGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMG 122
Query: 258 RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPN 317
+L + T E L A+ +VKPG+ REIG I + GFSVV+ YCGHGIG+ FH P
Sbjct: 123 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQ 182
Query: 318 IPHYSS 323
+ HY S
Sbjct: 183 VLHYDS 188
>pdb|4A6V|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
pdb|4A6V|B Chain B, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
Length = 265
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/186 (47%), Positives = 117/186 (62%), Gaps = 2/186 (1%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNY 198
+ IKTP+ IE+MR R+A EVL+ ++PGV+T E+DR+ ++ + S L Y
Sbjct: 3 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 62
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKL-EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEAS 257
H +PKS C S+NEV+CHGIPD KL +DGDIVNIDVTV G HGD ++ + VG
Sbjct: 63 HGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMG 122
Query: 258 RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPN 317
+L + T E L A+ +VKPG+ REIG I + GFSVV+ YCGHGIG FH P
Sbjct: 123 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQ 182
Query: 318 IPHYSS 323
+ HY S
Sbjct: 183 VLHYDS 188
>pdb|2GG0|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG2|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG3|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG5|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG7|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG8|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG9|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GGB|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GGC|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2Q93|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
B21
pdb|2Q95|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A05
pdb|2Q96|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A18
Length = 263
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/186 (47%), Positives = 117/186 (62%), Gaps = 2/186 (1%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNY 198
+ IKTP+ IE+MR R+A EVL+ ++PGV+T E+DR+ ++ + S L Y
Sbjct: 2 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 61
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKL-EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEAS 257
H +PKS C S+NEV+CHGIPD KL +DGDIVNIDVTV G HGD ++ + VG
Sbjct: 62 HGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMG 121
Query: 258 RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPN 317
+L + T E L A+ +VKPG+ REIG I + GFSVV+ YCGHGIG FH P
Sbjct: 122 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQ 181
Query: 318 IPHYSS 323
+ HY S
Sbjct: 182 VLHYDS 187
>pdb|1XNZ|A Chain A, Crystal Structure Of Mn(Ii) Form Of E. Coli. Methionine
Aminopeptidase In Complex With
5-(2-Chlorophenyl)furan-2- Carboxylic Acid
pdb|2BB7|A Chain A, Mn Form Of E. Coli Methionine Aminopeptidase In Complex
With A Quinolinyl Sulfonamide Inhibitor
pdb|2EVC|A Chain A, Crystal Structure Of E. Coli. Methionine Amino Peptidase
In Complex With 5-(2-(trifluoromethyl)phenyl)furan-2-
Carboxylic Acid
pdb|2EVM|A Chain A, Crystal Structure Of Methionine Aminopeptidase In Complex
With 5-(2,5-Dichlorophenyl)furan-2-Carboxylic Acid
pdb|2EVO|A Chain A, Crystal Structure Of Methionine Amino Peptidase In Complex
With N-Cyclopentyl-N-(Thiazol-2-Yl)oxalamide
pdb|2EVO|B Chain B, Crystal Structure Of Methionine Amino Peptidase In Complex
With N-Cyclopentyl-N-(Thiazol-2-Yl)oxalamide
pdb|1MAT|A Chain A, Structure Of The Cobalt-Dependent Methionine
Aminopeptidase From Escherichia Coli: A New Type Of
Proteolytic Enzyme
Length = 264
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/186 (47%), Positives = 117/186 (62%), Gaps = 2/186 (1%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNY 198
+ IKTP+ IE+MR R+A EVL+ ++PGV+T E+DR+ ++ + S L Y
Sbjct: 3 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 62
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKL-EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEAS 257
H +PKS C S+NEV+CHGIPD KL +DGDIVNIDVTV G HGD ++ + VG
Sbjct: 63 HGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMG 122
Query: 258 RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPN 317
+L + T E L A+ +VKPG+ REIG I + GFSVV+ YCGHGIG FH P
Sbjct: 123 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQ 182
Query: 318 IPHYSS 323
+ HY S
Sbjct: 183 VLHYDS 188
>pdb|2P99|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With
Inhibitor Ye6
Length = 261
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/186 (47%), Positives = 117/186 (62%), Gaps = 2/186 (1%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNY 198
+ IKTP+ IE+MR R+A EVL+ ++PGV+T E+DR+ ++ + S L Y
Sbjct: 2 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 61
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKL-EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEAS 257
H +PKS C S+NEV+CHGIPD KL +DGDIVNIDVTV G HGD ++ + VG
Sbjct: 62 HGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMG 121
Query: 258 RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPN 317
+L + T E L A+ +VKPG+ REIG I + GFSVV+ YCGHGIG FH P
Sbjct: 122 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQ 181
Query: 318 IPHYSS 323
+ HY S
Sbjct: 182 VLHYDS 187
>pdb|2P98|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With
Inhibitor Ye7
pdb|2P9A|A Chain A, E. Coli Methionine Aminopeptidase Dimetalated With
Inhibitor Ye6
pdb|2Q92|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
B23
pdb|2Q94|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A04
Length = 262
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/186 (47%), Positives = 117/186 (62%), Gaps = 2/186 (1%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNY 198
+ IKTP+ IE+MR R+A EVL+ ++PGV+T E+DR+ ++ + S L Y
Sbjct: 2 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 61
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKL-EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEAS 257
H +PKS C S+NEV+CHGIPD KL +DGDIVNIDVTV G HGD ++ + VG
Sbjct: 62 HGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMG 121
Query: 258 RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPN 317
+L + T E L A+ +VKPG+ REIG I + GFSVV+ YCGHGIG FH P
Sbjct: 122 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQ 181
Query: 318 IPHYSS 323
+ HY S
Sbjct: 182 VLHYDS 187
>pdb|2GU4|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
0.5, Di-Metalated
pdb|2GU4|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
0.5, Di-Metalated
pdb|2GU5|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
1, Di-Metalated
pdb|2GU5|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
1, Di-Metalated
pdb|2GU6|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
2, Di-metalated
pdb|2GU6|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
2, Di-metalated
pdb|2GU7|A Chain A, E. Coli Methionine Aminopeptidase Unliganded, 1:0.5
pdb|2GU7|B Chain B, E. Coli Methionine Aminopeptidase Unliganded, 1:0.5
Length = 263
Score = 176 bits (445), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 89/184 (48%), Positives = 116/184 (63%), Gaps = 2/184 (1%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNYHF 200
IKTP+ IE+MR R+A EVL+ ++PGV+T E+DR+ ++ + S L YH
Sbjct: 4 IKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG 63
Query: 201 FPKSCCTSVNEVICHGIPDSRKL-EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQ 259
+PKS C S+NEV+CHGIPD KL +DGDIVNIDVTV G HGD ++ + VG +
Sbjct: 64 YPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGER 123
Query: 260 LVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIP 319
L + T E L A+ +VKPG+ REIG I + GFSVV+ YCGHGIG FH P +
Sbjct: 124 LCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVL 183
Query: 320 HYSS 323
HY S
Sbjct: 184 HYDS 187
>pdb|2GTX|A Chain A, Structural Basis Of Catalysis By Mononuclear Methionine
Aminopeptidase
pdb|2GTX|B Chain B, Structural Basis Of Catalysis By Mononuclear Methionine
Aminopeptidase
pdb|3D27|A Chain A, E. Coli Methionine Aminopeptidase With Fe Inhibitor W29
Length = 261
Score = 175 bits (443), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 89/184 (48%), Positives = 116/184 (63%), Gaps = 2/184 (1%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNYHF 200
IKTP+ IE+MR R+A EVL+ ++PGV+T E+DR+ ++ + S L YH
Sbjct: 2 IKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG 61
Query: 201 FPKSCCTSVNEVICHGIPDSRKL-EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQ 259
+PKS C S+NEV+CHGIPD KL +DGDIVNIDVTV G HGD ++ + VG +
Sbjct: 62 YPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGER 121
Query: 260 LVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIP 319
L + T E L A+ +VKPG+ REIG I + GFSVV+ YCGHGIG FH P +
Sbjct: 122 LCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVL 181
Query: 320 HYSS 323
HY S
Sbjct: 182 HYDS 185
>pdb|3MX6|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
pdb|3MX6|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
Length = 262
Score = 168 bits (426), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 115/183 (62%)
Query: 139 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNY 198
+++I T +MR ++A E LD ++P VTT+ ++ + H + P+PLNY
Sbjct: 5 MIKIHTEKDFIKMRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHNFITSHNAIPAPLNY 64
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASR 258
FPKS CTS+N V+CHGIP+ + L++GDIVNIDVTV G +GD + Y+VG+ +
Sbjct: 65 KGFPKSICTSINHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGDVAIKPK 124
Query: 259 QLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNI 318
+L+Q TY+ + K I +V+PG + +IG I +A +SVV+ Y GHGIG +FH P+I
Sbjct: 125 RLIQVTYDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYSVVRDYTGHGIGRVFHDKPSI 184
Query: 319 PHY 321
+Y
Sbjct: 185 LNY 187
>pdb|3MR1|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|C Chain C, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|D Chain D, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
Length = 252
Score = 168 bits (425), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 115/183 (62%)
Query: 139 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNY 198
+++I T +MR ++A E LD ++P VTT+ ++ + H + P+PLNY
Sbjct: 5 MIKIHTEKDFIKMRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHNFITSHNAIPAPLNY 64
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASR 258
FPKS CTS+N V+CHGIP+ + L++GDIVNIDVTV G +GD + Y+VG+ +
Sbjct: 65 KGFPKSICTSINHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGDVAIKPK 124
Query: 259 QLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNI 318
+L+Q TY+ + K I +V+PG + +IG I +A +SVV+ Y GHGIG +FH P+I
Sbjct: 125 RLIQVTYDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYSVVRDYTGHGIGRVFHDKPSI 184
Query: 319 PHY 321
+Y
Sbjct: 185 LNY 187
>pdb|1O0X|A Chain A, Crystal Structure Of Methionine Aminopeptidase (Tm1478)
From Thermotoga Maritima At 1.90 A Resolution
Length = 262
Score = 137 bits (346), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 108/186 (58%), Gaps = 1/186 (0%)
Query: 139 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNY 198
++ IKTP +IE+M++ + L ++I PG T +++ +V E P+ Y
Sbjct: 13 MIRIKTPSEIEKMKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGY 72
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKL-EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEAS 257
+ + C SVNE + HG+P K+ ++GDIV++DV Y+G++GD TY VG DE
Sbjct: 73 GGYKYATCVSVNEEVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIVGETDERG 132
Query: 258 RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPN 317
++LV+ T E LEKAI ++KPG+R ++ I GF+V++ Y GHG+G H P
Sbjct: 133 KELVRVTREVLEKAIKMIKPGIRLGDVSHCIQETVESVGFNVIRDYVGHGVGRELHEDPQ 192
Query: 318 IPHYSS 323
IP+Y +
Sbjct: 193 IPNYGT 198
>pdb|1QXW|A Chain A, Crystal Structure Of Staphyloccocus Aureus In Complex With
An Aminoketone Inhibitor 54135.
pdb|1QXY|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle 618
pdb|1QXZ|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle Inhibitor 119
Length = 252
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFF 201
+KT ++++ ++E I +V + +PG+TT E+D + E G +P++ F
Sbjct: 3 VKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENF 62
Query: 202 PKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLV 261
P C SVNE + HGIP R + +GD+VNIDV+ G + D ++ VG +D+ +Q V
Sbjct: 63 PGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKV 122
Query: 262 -QCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAP 316
E AI+ VKPG + IG+ ++ A + V+K+ GHG+G H AP
Sbjct: 123 CDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAP 178
>pdb|3TB5|A Chain A, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
pdb|3TB5|B Chain B, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
pdb|3TB5|C Chain C, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
Length = 264
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 99/184 (53%)
Query: 139 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNY 198
++ +K+P +IE M E+ + +V I+PG+T+ +I+ V + + GG + + Y
Sbjct: 1 MITLKSPREIEMMDESGELLADVHRHLRTFIKPGITSWDIEVFVRDFIESHGGVAAQIGY 60
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASR 258
+ + C S+N+ ICHG P + L+DGD++ +D+ V KG D +Y VG +
Sbjct: 61 EGYKYATCCSINDEICHGFPRKKVLKDGDLIKVDMCVDLKGAISDSCWSYVVGESTPEID 120
Query: 259 QLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNI 318
+L++ T + L I + G R +IG I + G+ VV+ + GHGIG H +P I
Sbjct: 121 RLMEVTKKALYLGIEQAQVGNRIGDIGHAIQTYVEGEGYGVVRDFVGHGIGPTIHESPMI 180
Query: 319 PHYS 322
PHY
Sbjct: 181 PHYG 184
>pdb|3TAV|A Chain A, Crystal Structure Of A Methionine Aminopeptidase From
Mycobacterium Abscessus
pdb|3TAV|B Chain B, Crystal Structure Of A Methionine Aminopeptidase From
Mycobacterium Abscessus
Length = 286
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 92/191 (48%), Gaps = 7/191 (3%)
Query: 137 QHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPL 196
+ VE +TP +++ M I L A + GV+T E+D+V AG PS L
Sbjct: 29 KKTVEQRTPGELDAMAAAGSIVGAALVAVRDAAKAGVSTLELDQVAESVIREAGAVPSFL 88
Query: 197 NYHFFPKSCCTSVNEVICHGIPDSRK-LEDGDIVNIDVTVYYKGVHGDLNETYFVGNADE 255
YH FP S C+SVN+ + HGIP + L DGD+V+ID G HGD T+ VG
Sbjct: 89 GYHGFPASICSSVNDQVVHGIPSATAVLADGDLVSIDCGAILDGWHGDSAWTFAVGTVIP 148
Query: 256 ASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMS------GFSVVKSYCGHGIG 309
+ L + T +E I+ + PG R ++ I + F +V Y GHGIG
Sbjct: 149 SDEALSEATRLSMEAGIAAMIPGNRLTDVSHAIELGTRAAEKQFDRAFGIVDGYGGHGIG 208
Query: 310 ELFHCAPNIPH 320
H P +P+
Sbjct: 209 RSMHLDPFLPN 219
>pdb|2DFI|A Chain A, Crystal Structure Of Pf-Map(1-292)-C
pdb|2DFI|B Chain B, Crystal Structure Of Pf-Map(1-292)-C
Length = 301
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 93/194 (47%), Gaps = 21/194 (10%)
Query: 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTS 208
E++ + IA++V + A ++ RPG+ E+ + + + GG P+ FP S
Sbjct: 4 EKLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPA------FP--VNLS 55
Query: 209 VNEVICHGIP---DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTY 265
+NE+ H P D+ L++GD + IDV V+ G D T VG ++ +L++
Sbjct: 56 INEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEED---ELMEAAK 112
Query: 266 ECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGEL-FHCAPNIPHYSSL 324
E L AIS+ + GV +E+G+ I GF + + GH I H +IP+
Sbjct: 113 EALNAAISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIERYKLHAGISIPNI--- 169
Query: 325 YHAFQPHIFYIQKS 338
++PH Y+ K
Sbjct: 170 ---YRPHDNYVLKE 180
>pdb|1XGS|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGS|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1WKM|A Chain A, The Product Bound Form Of The Mn(Ii)loaded Methionine
Aminopeptidase From Hyperthermophile Pyrococcus Furiosus
pdb|1WKM|B Chain B, The Product Bound Form Of The Mn(Ii)loaded Methionine
Aminopeptidase From Hyperthermophile Pyrococcus Furiosus
pdb|1XGO|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
Length = 295
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 93/194 (47%), Gaps = 21/194 (10%)
Query: 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTS 208
E++ + IA++V + A ++ RPG+ E+ + + + GG P+ FP S
Sbjct: 4 EKLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPA------FP--VNLS 55
Query: 209 VNEVICHGIP---DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTY 265
+NE+ H P D+ L++GD + IDV V+ G D T VG ++ +L++
Sbjct: 56 INEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEED---ELMEAAK 112
Query: 266 ECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGEL-FHCAPNIPHYSSL 324
E L AIS+ + GV +E+G+ I GF + + GH I H +IP+
Sbjct: 113 EALNAAISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIERYKLHAGISIPNI--- 169
Query: 325 YHAFQPHIFYIQKS 338
++PH Y+ K
Sbjct: 170 ---YRPHDNYVLKE 180
>pdb|1PV9|A Chain A, Prolidase From Pyrococcus Furiosus
pdb|1PV9|B Chain B, Prolidase From Pyrococcus Furiosus
Length = 348
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 82/184 (44%), Gaps = 8/184 (4%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFF 201
IKT ++IE + + C IA + + AA I G E+ V E + G P F
Sbjct: 124 IKTKEEIEIIEKACEIADKAVMAAIEEITEGKREREVAAKV-EYLMKMNGAEKPA----F 178
Query: 202 PKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLV 261
+ + HG+ +++E GD+V ID+ Y + D+ T VG+ +E R++
Sbjct: 179 DTIIASGHRSALPHGVASDKRIERGDLVVIDLGALYNHYNSDITRTIVVGSPNEKQREIY 238
Query: 262 QCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFS--VVKSYCGHGIGELFHCAPNIP 319
+ E ++A+ KPG+ +E+ + G+ + S GHG+G H P I
Sbjct: 239 EIVLEAQKRAVEAAKPGMTAKELDSIAREIIKEYGYGDYFIHS-LGHGVGLEIHEWPRIS 297
Query: 320 HYSS 323
Y
Sbjct: 298 QYDE 301
>pdb|3Q6D|A Chain A, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|B Chain B, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|C Chain C, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|D Chain D, Xaa-Pro Dipeptidase From Bacillus Anthracis
Length = 356
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 78/182 (42%), Gaps = 6/182 (3%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFF 201
IKT +I+ ++E +IA + IRPGV+ E+ + G S F
Sbjct: 130 IKTDSEIKILKEAAQIADAAFEHILSFIRPGVSEIEVSNELEFFMRKQGATSSS-----F 184
Query: 202 PKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLV 261
+ + + HG+ + +E GD V +D YYKG D+ T VG + +++
Sbjct: 185 DIIVASGLRSALPHGVASEKVIETGDFVTLDFGAYYKGYCSDITRTIAVGEPSDKLKEIY 244
Query: 262 QCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSY-CGHGIGELFHCAPNIPH 320
E + ++ +K G+ RE + + T G+ + GHGIG H AP +
Sbjct: 245 NIVLEAQLRGVNGIKAGLTGREADALTRDYITEKGYGEYFGHSTGHGIGLEIHEAPGLAF 304
Query: 321 YS 322
S
Sbjct: 305 RS 306
>pdb|1WY2|A Chain A, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
pdb|1WY2|B Chain B, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
Length = 351
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 6/181 (3%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFF 201
IK+ +I+ + + C IA + + AA I G E+ V E + G P F
Sbjct: 127 IKSEKEIKIIEKACEIADKAVMAAIEEITEGKKEREVAAKV-EYLMKMNGAEKPA----F 181
Query: 202 PKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLV 261
+ + HG+ +++E GD+V ID+ Y+ + D+ T VG+ +E +++
Sbjct: 182 DTIIASGYRSALPHGVASDKRIERGDLVVIDLGALYQHYNSDITRTIVVGSPNEKQKEIY 241
Query: 262 QCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSY-CGHGIGELFHCAPNIPH 320
+ E +KA+ KPG+ +E+ + G+ ++ GHG+G H P +
Sbjct: 242 EIVLEAQKKAVESAKPGITAKELDSIARNIIAEYGYGEYFNHSLGHGVGLEVHEWPRVSQ 301
Query: 321 Y 321
Y
Sbjct: 302 Y 302
>pdb|2V3Z|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 9/150 (6%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEID-RVVHEATITAGGYPSPLNYHF 200
K+P++I +R I A RPG+ ++ + HE YPS
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------ 228
Query: 201 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQ 259
+ + N I H + ++ DGD+V ID YKG GD+ T+ V G +A R+
Sbjct: 229 YNTIVGSGENGCILHYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQRE 288
Query: 260 LVQCTYECLEKAISIVKPGVRFREI-GEVI 288
+ E LE ++ + +PG E+ GEV+
Sbjct: 289 IYDIVLESLETSLRLYRPGTSILEVTGEVV 318
>pdb|1WL9|A Chain A, Structure Of Aminopeptidase P From E. Coli
pdb|1W2M|A Chain A, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|B Chain B, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|C Chain C, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|D Chain D, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|E Chain E, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|F Chain F, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W7V|A Chain A, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|B Chain B, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|C Chain C, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|D Chain D, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|A Chain A, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|B Chain B, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|C Chain C, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|D Chain D, Zn Mg Substituted Aminopeptidase P From E. Coli
Length = 440
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 9/150 (6%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEID-RVVHEATITAGGYPSPLNYHF 200
K+P++I +R I A RPG+ ++ + HE YPS
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------ 228
Query: 201 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQ 259
+ + N I H + ++ DGD+V ID YKG GD+ T+ V G +A R+
Sbjct: 229 YNTIVGSGENGCILHYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQRE 288
Query: 260 LVQCTYECLEKAISIVKPGVRFREI-GEVI 288
+ E LE ++ + +PG E+ GEV+
Sbjct: 289 IYDIVLESLETSLRLYRPGTSILEVTGEVV 318
>pdb|2BWV|A Chain A, His361ala Escherichia Coli Aminopeptidase P
pdb|2V3Y|A Chain A, His361ala Escherichia Coli Aminopeptidase P In Complex
With Product
Length = 440
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 9/150 (6%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEID-RVVHEATITAGGYPSPLNYHF 200
K+P++I +R I A RPG+ ++ + HE YPS
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------ 228
Query: 201 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQ 259
+ + N I H + ++ DGD+V ID YKG GD+ T+ V G +A R+
Sbjct: 229 YNTIVGSGENGCILHYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQRE 288
Query: 260 LVQCTYECLEKAISIVKPGVRFREI-GEVI 288
+ E LE ++ + +PG E+ GEV+
Sbjct: 289 IYDIVLESLETSLRLYRPGTSILEVTGEVV 318
>pdb|1M35|A Chain A, Aminopeptidase P From Escherichia Coli
pdb|1M35|B Chain B, Aminopeptidase P From Escherichia Coli
pdb|1M35|C Chain C, Aminopeptidase P From Escherichia Coli
pdb|1M35|D Chain D, Aminopeptidase P From Escherichia Coli
pdb|1M35|E Chain E, Aminopeptidase P From Escherichia Coli
pdb|1M35|F Chain F, Aminopeptidase P From Escherichia Coli
pdb|1N51|A Chain A, Aminopeptidase P In Complex With The Inhibitor Apstatin
pdb|1WL6|A Chain A, Mg-Substituted Form Of E. Coli Aminopeptidase P
pdb|1WLR|A Chain A, Apo Aminopeptidase P From E. Coli
pdb|2BHA|A Chain A, E. Coli Aminopeptidase P In Complex With Substrate
pdb|2BHB|A Chain A, Zn Substituted E. Coli Aminopeptidase P
pdb|2BHC|A Chain A, Na Substituted E. Coli Aminopeptidase P
pdb|2BHD|A Chain A, Mg Substituted E. Coli Aminopeptidase P In Complex With
Product
pdb|1A16|A Chain A, Aminopeptidase P From E. Coli With The Inhibitor Pro-Leu
pdb|2BH3|A Chain A, Zn Substituted E.Coli Aminopeptidase P In Complex With
Product
pdb|2BN7|A Chain A, Mn Substituted E. Coli Aminopeptidase P In Complex With
Product And Zn
Length = 440
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 9/150 (6%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEID-RVVHEATITAGGYPSPLNYHF 200
K+P++I +R I A RPG+ ++ + HE YPS
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------ 228
Query: 201 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQ 259
+ + N I H + ++ DGD+V ID YKG GD+ T+ V G +A R+
Sbjct: 229 YNTIVGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQRE 288
Query: 260 LVQCTYECLEKAISIVKPGVRFREI-GEVI 288
+ E LE ++ + +PG E+ GEV+
Sbjct: 289 IYDIVLESLETSLRLYRPGTSILEVTGEVV 318
>pdb|1JAW|A Chain A, Aminopeptidase P From E. Coli Low Ph Form
Length = 440
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 9/150 (6%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEID-RVVHEATITAGGYPSPLNYHF 200
K+P++I +R I A RPG+ ++ + HE YPS
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------ 228
Query: 201 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQ 259
+ + N I H + ++ DGD+V ID YKG GD+ T+ V G +A R+
Sbjct: 229 YNTIVGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQRE 288
Query: 260 LVQCTYECLEKAISIVKPGVRFREI-GEVI 288
+ E LE ++ + +PG E+ GEV+
Sbjct: 289 IYDIVLESLETSLRLYRPGTSILEVTGEVV 318
>pdb|2BWY|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 9/150 (6%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEID-RVVHEATITAGGYPSPLNYHF 200
K+P++I +R I A RPG+ ++ + HE YPS
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------ 228
Query: 201 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQ 259
+ + N I H + ++ DGD+V ID YKG GD+ T+ V G +A R+
Sbjct: 229 YNTIVGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQRE 288
Query: 260 LVQCTYECLEKAISIVKPGVRFREI-GEVI 288
+ E LE ++ + +PG E+ GEV+
Sbjct: 289 IYDIVLESLETSLRLYRPGTSILEVTGEVV 318
>pdb|2BWW|A Chain A, His350ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 9/150 (6%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEID-RVVHEATITAGGYPSPLNYHF 200
K+P++I +R I A RPG+ ++ + HE YPS
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------ 228
Query: 201 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQ 259
+ + N I H + ++ DGD+V ID YKG GD+ T+ V G +A R+
Sbjct: 229 YNTIVGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQRE 288
Query: 260 LVQCTYECLEKAISIVKPGVRFREI-GEVI 288
+ E LE ++ + +PG E+ GEV+
Sbjct: 289 IYDIVLESLETSLRLYRPGTSILEVTGEVV 318
>pdb|2BWS|A Chain A, His243ala Escherichia Coli Aminopeptidase P
pdb|2V3X|A Chain A, His243ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 9/150 (6%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEID-RVVHEATITAGGYPSPLNYHF 200
K+P++I +R I A RPG+ ++ + HE YPS
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------ 228
Query: 201 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQ 259
+ + N I + ++ DGD+V ID YKG GD+ T+ V G +A R+
Sbjct: 229 YNTIVGSGENGCILAYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQRE 288
Query: 260 LVQCTYECLEKAISIVKPGVRFREI-GEVI 288
+ E LE ++ + +PG E+ GEV+
Sbjct: 289 IYDIVLESLETSLRLYRPGTSILEVTGEVV 318
>pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
pdb|2ZSG|B Chain B, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
Length = 359
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 80/188 (42%), Gaps = 6/188 (3%)
Query: 133 NSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGY 192
+ +++ + +K +IE++++ I+ + IR G+T EI ++ E T+ G
Sbjct: 124 DDEVKQMRMVKDEGEIEKIKQAIEISERAFLETVQQIRAGMTEKEIAALL-EYTMRKEG- 181
Query: 193 PSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGN 252
+ + S C S + HG + +E GD++ ID Y+ D+ +G
Sbjct: 182 AEGVAFDTIVASGCRSA---LPHGKASDKVVERGDVIVIDFGATYENYCADITRVVSIGE 238
Query: 253 ADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSY-CGHGIGEL 311
+ +++ E E+A+ I K GV + + V G+ + GHGIG
Sbjct: 239 PSDEVKEVHSIVLEAQERALKIAKAGVTGKLLDSVAREFIREKGYGEFFGHSLGHGIGLE 298
Query: 312 FHCAPNIP 319
H P I
Sbjct: 299 VHEGPAIS 306
>pdb|2BWX|A Chain A, His354ala Escherichia Coli Aminopeptidase P
Length = 441
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 10/151 (6%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEID-RVVHEATITAGGYPSPLNYHF 200
K+P++I +R I A RPG+ ++ + HE YPS
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------ 228
Query: 201 FPKSCCTSVNEVICHGIPDS-RKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASR 258
+ + N I H + ++ DGD+V ID YKG GD+ T+ V G +A R
Sbjct: 229 YNTIVGSGENGCILHYTENECXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQR 288
Query: 259 QLVQCTYECLEKAISIVKPGVRFREI-GEVI 288
++ E LE ++ + +PG E+ GEV+
Sbjct: 289 EIYDIVLESLETSLRLYRPGTSILEVTGEVV 319
>pdb|2BWT|A Chain A, Asp260ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 9/150 (6%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEID-RVVHEATITAGGYPSPLNYHF 200
K+P++I +R I A RPG+ ++ + HE YPS
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------ 228
Query: 201 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQ 259
+ + N I H + ++ DGD+V I YKG GD+ T+ V G +A R+
Sbjct: 229 YNTIVGSGENGCILHYTENECEMRDGDLVLIAAGCEYKGYAGDITRTFPVNGKFTQAQRE 288
Query: 260 LVQCTYECLEKAISIVKPGVRFREI-GEVI 288
+ E LE ++ + +PG E+ GEV+
Sbjct: 289 IYDIVLESLETSLRLYRPGTSILEVTGEVV 318
>pdb|2BWU|A Chain A, Asp271ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 9/150 (6%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEID-RVVHEATITAGGYPSPLNYHF 200
K+P++I +R I A RPG+ ++ + HE YPS
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------ 228
Query: 201 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQ 259
+ + N I H + ++ DGD+V ID YKG G + T+ V G +A R+
Sbjct: 229 YNTIVGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGAITRTFPVNGKFTQAQRE 288
Query: 260 LVQCTYECLEKAISIVKPGVRFREI-GEVI 288
+ E LE ++ + +PG E+ GEV+
Sbjct: 289 IYDIVLESLETSLRLYRPGTSILEVTGEVV 318
>pdb|1WN1|A Chain A, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|1WN1|B Chain B, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|2HOW|A Chain A, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
pdb|2HOW|B Chain B, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
Length = 356
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 81/205 (39%), Gaps = 14/205 (6%)
Query: 121 DWALD----GTPKVEPNSDL-QHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTT 175
DW + G +P S L + + IK ++++ M RIA +V + +T
Sbjct: 105 DWLIGIMKLGKFTFQPLSSLIKELRMIKDKEEVKMMEHASRIADKVFEEI-------LTW 157
Query: 176 DEIDRVVHEATITAGGYPSPLNYHF-FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVT 234
D I E + L+ F + N H P RK+ GDI+ +D
Sbjct: 158 DLIGMKERELALKIELLIRELSDGIAFEPIVASGENAANPHHEPGERKIRKGDIIILDYG 217
Query: 235 VYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATM 294
+KG D+ T +G DE ++ + + E A V+ G++ +++ +
Sbjct: 218 ARWKGYCSDITRTIGLGELDERLVKIYEVVKDAQESAFKAVREGIKAKDVDSRAREVISK 277
Query: 295 SGFS-VVKSYCGHGIGELFHCAPNI 318
+G+ GHG+G H P I
Sbjct: 278 AGYGEYFIHRTGHGLGLDVHEEPYI 302
>pdb|4EGE|A Chain A, Crystal Structure Of Dipeptidase Pepe From Mycobacterium
Ulcerans
Length = 378
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 60/148 (40%), Gaps = 16/148 (10%)
Query: 215 HGIPDSRKLEDGDIVNIDVT-VYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAIS 273
HG D RKL+ GDIV +D+ Y G + D TY +G+ Q A+
Sbjct: 218 HGYSD-RKLQVGDIVVVDIGGTYEPGYYSDSTRTYSIGDPSPDVAQQYSALQRAQRAAVD 276
Query: 274 IVKPGVRFREIGEVINRHATMSGFSVVKSY-CGHGIGELFHCAPNI------PHYSSLYH 326
V+PGV ++ +G + + GHGIG H P I P + +
Sbjct: 277 AVRPGVTAAQVDAAARDVLADAGLAEYFVHRTGHGIGLCVHEEPYIVAGNELPLVAGMAF 336
Query: 327 AFQPHIFY-------IQKSFYFMDNGQL 347
+ +P I++ I+ +NG L
Sbjct: 337 SIEPGIYFPGRWGARIEDIVVVTENGAL 364
>pdb|2V6C|A Chain A, Crystal Structure Of Erbb3 Binding Protein 1 (Ebp1)
Length = 353
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
Query: 201 FPKSCCTSVNEVICHGIP----DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEA 256
FP S SVN +CH P L++GD+V ID+ V+ G ++ T+ +G A
Sbjct: 69 FPTSI--SVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVIGVAQGT 126
Query: 257 S-----RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHA 292
+++ + C E A+ +VKPG + ++ E N+ A
Sbjct: 127 QVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVA 167
>pdb|2Q8K|A Chain A, The Crystal Structure Of Ebp1
Length = 401
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 11/101 (10%)
Query: 201 FPKSCCTSVNEVICHGIPDSRK----LEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEA 256
FP S SVN +CH P L++GD+V ID+ V+ G ++ T+ V A
Sbjct: 83 FPTSI--SVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVVDVAQGT 140
Query: 257 S-----RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHA 292
+++ + C E A+ +VKPG + ++ E N+ A
Sbjct: 141 QVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVA 181
>pdb|3J2I|A Chain A, Structure Of Late Pre-60s Ribosomal Subunits With Nuclear
Export Factor Arx1 Bound At The Peptide Exit Tunnel
Length = 394
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 11/101 (10%)
Query: 201 FPKSCCTSVNEVICHGIPDSRK----LEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEA 256
FP S SVN +CH P L++GD+V ID+ V+ G ++ T+ V A
Sbjct: 76 FPTSI--SVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVVDVAQGT 133
Query: 257 S-----RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHA 292
+++ + C E A+ +VKPG + ++ E N+ A
Sbjct: 134 QVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVA 174
>pdb|1CHM|A Chain A, Enzymatic Mechanism Of Creatine Amidinohydrolase As
Deduced From Crystal Structures
Length = 401
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 9/112 (8%)
Query: 207 TSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYE 266
+ +N H +RK+ GDI++++ G + L T F+ + + +L Q E
Sbjct: 223 SGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQVNVE 282
Query: 267 CLEKAISIVKPGVR----FREIGEVINRHATMSGFSVVKSY-CGHGIGELFH 313
E + ++KPG R RE+ E+ +H + +++ GH G L H
Sbjct: 283 VHEAGLKLIKPGARCSDIARELNEIFLKHDVLQ----YRTFGYGHSFGTLSH 330
>pdb|1CHM|B Chain B, Enzymatic Mechanism Of Creatine Amidinohydrolase As
Deduced From Crystal Structures
Length = 401
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 9/112 (8%)
Query: 207 TSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYE 266
+ +N H +RK+ GDI++++ G + L T F+ + + +L Q E
Sbjct: 223 SGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQVNVE 282
Query: 267 CLEKAISIVKPGVR----FREIGEVINRHATMSGFSVVKSY-CGHGIGELFH 313
E + ++KPG R RE+ E+ +H + +++ GH G L H
Sbjct: 283 VHEAGLKLIKPGARCSDIARELNEIFLKHDVLQ----YRTFGYGHSFGTLSH 330
>pdb|4FKC|A Chain A, Recombinant Prolidase From Thermococcus Sibiricus
Length = 377
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 45/111 (40%), Gaps = 13/111 (11%)
Query: 215 HGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISI 274
H P RK+ GD+V D Y G D+ T VG E +++ + E E A+
Sbjct: 219 HHRPSHRKIRKGDVVIFDYGAKYLGYCSDVTRTVVVGPPSEEVKKVYEIVKEAQETAVQK 278
Query: 275 VKPGVRFREIGEVINRHATMSGFSVVKSY-------CGHGIGELFHCAPNI 318
V G+ EV++ AT G Y GHG+G H P I
Sbjct: 279 VAEGIP----AEVVD--ATARGIISKYGYGEYFIHRTGHGLGIDVHEEPYI 323
>pdb|3IG4|A Chain A, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|B Chain B, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|C Chain C, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|D Chain D, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|E Chain E, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|F Chain F, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
Length = 427
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 194 SPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNA 253
S + +H F + N + H + ++++GD+V +D+ + D++ T F N
Sbjct: 218 SGIKHHAFNTILASGKNATVLHYEDNDAQIQNGDLVLLDLGAQKDYYNADISYT-FPANG 276
Query: 254 DEASR--QLVQCTYECLEKAISIVKPGVRFREIGE 286
+SR Q+ L++ I+KPG++F + E
Sbjct: 277 TFSSRQKQIYNIVLNALKETTEIIKPGLKFAALNE 311
>pdb|1KP0|A Chain A, The Crystal Structure Analysis Of Creatine
Amidinohydrolase From Actinobacillus
pdb|1KP0|B Chain B, The Crystal Structure Analysis Of Creatine
Amidinohydrolase From Actinobacillus
Length = 402
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 1/108 (0%)
Query: 207 TSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYE 266
+ +N H R + GDI++++ G + L T F+ +AS +
Sbjct: 223 SGINTDGAHNPVTXRVVXRGDILSLNCFPMIFGYYTALERTLFLXXVXDASLXIWXKNTA 282
Query: 267 CLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSY-CGHGIGELFH 313
+ + ++KPG R ++I +N +++ GH G L H
Sbjct: 283 VHRRGLXLIKPGARCKDIASELNXMYRXWDLLRYRTFGYGHSFGVLXH 330
>pdb|3ES5|A Chain A, Crystal Structure Of Partitivirus (Psv-F)
pdb|3ES5|B Chain B, Crystal Structure Of Partitivirus (Psv-F)
Length = 420
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 22/96 (22%)
Query: 45 DCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQARTPKLPHFDWTGTLRP 104
DC K W H S+ + +L++ S LV + +R +G + +P
Sbjct: 202 DCSKLVWADHSSLSMIKRLASEKI---SQLVKQRYRVTDAQGHVYSVSMP---------- 248
Query: 105 YPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVV 140
+LT A LPD+ D P V PNSD V+
Sbjct: 249 -----QLTDQA---LPDY-YDSIPDVAPNSDQLRVL 275
>pdb|1IBV|B Chain B, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
Bound With Histidine Methyl Ester At-170 C
pdb|1IBV|D Chain D, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
Bound With Histidine Methyl Ester At-170 C
pdb|1IBV|F Chain F, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
Bound With Histidine Methyl Ester At-170 C
pdb|1IBW|B Chain B, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
Bound With Histidine Methyl Ester At 25 C
pdb|1IBW|D Chain D, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
Bound With Histidine Methyl Ester At 25 C
pdb|1IBW|F Chain F, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
Bound With Histidine Methyl Ester At 25 C
Length = 228
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 98 WTG----TLRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERM 151
W G + P I + +TV Y+ LP ++ G + P+ D++ + + P+ +E+M
Sbjct: 158 WIGFAYTMMEPGQIGNAITVAPYVSLPIDSIPGGSILTPDKDMEIMENLTMPEWLEKM 215
>pdb|1HQ6|B Chain B, Structure Of Pyruvoyl-dependent Histidine Decarboxylase At
Ph 8
pdb|1HQ6|D Chain D, Structure Of Pyruvoyl-dependent Histidine Decarboxylase At
Ph 8
pdb|1IBT|B Chain B, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
At-170 C
pdb|1IBT|D Chain D, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
At-170 C
pdb|1IBT|F Chain F, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
At-170 C
pdb|1IBU|B Chain B, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
At 25 C
pdb|1IBU|D Chain D, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
At 25 C
pdb|1IBU|F Chain F, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
At 25 C
pdb|1PYA|B Chain B, Refined Structure Of The Pyruvoyl-Dependent Histidine
Decarboxylase From Lactobacillus 30a
pdb|1PYA|D Chain D, Refined Structure Of The Pyruvoyl-Dependent Histidine
Decarboxylase From Lactobacillus 30a
pdb|1PYA|F Chain F, Refined Structure Of The Pyruvoyl-Dependent Histidine
Decarboxylase From Lactobacillus 30a
Length = 229
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 98 WTG----TLRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERM 151
W G + P I + +TV Y+ LP ++ G + P+ D++ + + P+ +E+M
Sbjct: 159 WIGFAYTMMEPGQIGNAITVAPYVSLPIDSIPGGSILTPDKDMEIMENLTMPEWLEKM 216
>pdb|2YXL|A Chain A, Crystal Structure Of Ph0851
Length = 450
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 20/24 (83%)
Query: 149 ERMRETCRIAREVLDAAARMIRPG 172
+++ E ++ RE+L++AAR+++PG
Sbjct: 359 DKINEMSQLQRELLESAARLVKPG 382
>pdb|2WYB|B Chain B, The Quorum Quenching N-Acyl Homoserine Lactone Acylase
Pvdq With A Covalently Bound Dodecanoic Acid
pdb|2WYC|B Chain B, The Quorum Quenching N-Acyl Homoserine Lactone Acylase
Pvdq In Complex With 3-Oxo-Lauric Acid
pdb|2WYD|B Chain B, The Quorum Quenching N-Acyl Homoserine Lactone Acylase
Pvdq In Complex With Dodecanoic Acid
pdb|2WYE|B Chain B, The Quorum Quenching N-Acyl Homoserine Lactone Acylase
Pvdq Is An Ntn-Hydrolase With An Unusual
Substrate-Binding Pocket
pdb|3L91|B Chain B, Structure Of Pseudomonas Aerugionsa Pvdq Bound To
Octanoate
pdb|3L94|B Chain B, Structure Of Pvdq Covalently Acylated With Myristate
pdb|3SRA|B Chain B, Structure Of Pseudomonas Aerugionsa Pvdq Covalently
Acylated With Myristic Acid From Pvdiq
pdb|3SRB|B Chain B, Structure Of Pseudomonas Aeruginosa Pvdq Bound To Smer28
pdb|3SRC|B Chain B, Structure Of Pseudomonas Aeruginosa Pvdq Bound To Ns2028
Length = 546
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 94 PHFDWTGTLRPYPISSKLTVPAYIELPDWALDGTPKV 130
PHF W G +R Y + LT+P +++ +L G P V
Sbjct: 22 PHFPWNGAMRFYQM--HLTIPGRLDVMGASLPGLPVV 56
>pdb|2JW6|A Chain A, Solution Structure Of The Deaf1 Mynd Domain
Length = 52
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 4 GSDAAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSV 57
G+ AE SCV CG+ A +C C ++ +C+ C + W H+ +
Sbjct: 1 GAMDAERKEQSCVNCGREAMSECTGCHKVN-------YCSTFCQRKDWKDHQHI 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,361,972
Number of Sequences: 62578
Number of extensions: 479007
Number of successful extensions: 1326
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1188
Number of HSP's gapped (non-prelim): 76
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)