Query 018857
Match_columns 349
No_of_seqs 383 out of 1770
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 04:37:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018857.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018857hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2738 Putative methionine am 100.0 1.4E-93 3.1E-98 651.3 25.7 312 10-343 4-320 (369)
2 PLN03158 methionine aminopepti 100.0 7.1E-89 1.5E-93 667.1 33.1 335 5-341 2-339 (396)
3 COG0024 Map Methionine aminope 100.0 4.7E-47 1E-51 348.8 22.3 201 141-341 4-209 (255)
4 PRK07281 methionine aminopepti 100.0 4.9E-46 1.1E-50 351.7 24.3 204 139-342 1-238 (286)
5 PRK12897 methionine aminopepti 100.0 1.1E-45 2.4E-50 343.6 24.0 202 140-341 2-206 (248)
6 PRK12318 methionine aminopepti 100.0 2.6E-45 5.6E-50 348.3 24.9 205 140-344 41-249 (291)
7 TIGR00500 met_pdase_I methioni 100.0 6.3E-45 1.4E-49 338.0 24.6 203 141-343 2-207 (247)
8 PRK05716 methionine aminopepti 100.0 2E-43 4.2E-48 328.6 24.2 204 139-342 2-208 (252)
9 PRK09795 aminopeptidase; Provi 100.0 1E-43 2.3E-48 347.3 23.4 203 136-345 121-330 (361)
10 PRK12896 methionine aminopepti 100.0 3.2E-43 7E-48 327.7 24.0 204 138-341 6-213 (255)
11 COG0006 PepP Xaa-Pro aminopept 100.0 1.2E-42 2.6E-47 342.4 21.3 209 130-345 142-355 (384)
12 TIGR02993 ectoine_eutD ectoine 100.0 1.6E-41 3.5E-46 335.0 20.6 206 132-345 148-363 (391)
13 PRK15173 peptidase; Provisiona 100.0 4.1E-41 8.9E-46 324.1 22.7 205 133-345 86-294 (323)
14 PRK10879 proline aminopeptidas 100.0 1.2E-40 2.6E-45 332.9 23.7 201 136-343 167-388 (438)
15 PRK14575 putative peptidase; P 100.0 1.9E-40 4.1E-45 328.8 23.2 205 133-345 169-377 (406)
16 cd01090 Creatinase Creatine am 100.0 3.2E-40 6.9E-45 303.4 22.9 195 148-342 1-201 (228)
17 cd01087 Prolidase Prolidase. E 100.0 2.2E-40 4.8E-45 306.8 21.7 190 148-343 1-211 (243)
18 cd01086 MetAP1 Methionine Amin 100.0 6.9E-40 1.5E-44 302.3 23.1 194 148-341 1-197 (238)
19 PRK14576 putative endopeptidas 100.0 7.3E-40 1.6E-44 324.5 23.1 204 134-345 169-376 (405)
20 cd01092 APP-like Similar to Pr 100.0 1E-38 2.2E-43 287.8 23.1 191 148-345 1-193 (208)
21 PRK13607 proline dipeptidase; 100.0 1.2E-38 2.6E-43 318.3 21.8 201 136-343 155-391 (443)
22 cd01085 APP X-Prolyl Aminopept 100.0 2.4E-37 5.1E-42 283.5 22.0 191 149-345 5-204 (224)
23 PF00557 Peptidase_M24: Metall 100.0 1.8E-37 4E-42 279.9 19.4 190 149-345 1-195 (207)
24 cd01066 APP_MetAP A family inc 100.0 8.7E-36 1.9E-40 266.1 22.0 188 148-343 1-190 (207)
25 TIGR00495 crvDNA_42K 42K curve 100.0 7.1E-36 1.5E-40 293.3 22.6 199 140-341 11-233 (389)
26 PRK08671 methionine aminopepti 100.0 2.8E-35 6.2E-40 279.7 22.8 188 147-346 1-194 (291)
27 TIGR00501 met_pdase_II methion 100.0 4E-35 8.8E-40 279.0 22.2 190 145-346 2-197 (295)
28 PTZ00053 methionine aminopepti 100.0 4.3E-35 9.4E-40 290.4 22.9 198 139-346 149-365 (470)
29 cd01088 MetAP2 Methionine Amin 100.0 1.2E-34 2.5E-39 275.5 21.7 187 148-346 1-193 (291)
30 cd01091 CDC68-like Related to 100.0 1.3E-34 2.9E-39 268.3 19.5 194 148-343 1-211 (243)
31 cd01089 PA2G4-like Related to 100.0 6.7E-34 1.5E-38 261.3 20.2 193 148-345 1-208 (228)
32 KOG2414 Putative Xaa-Pro amino 100.0 7E-33 1.5E-37 263.0 16.7 200 137-345 223-442 (488)
33 KOG2737 Putative metallopeptid 100.0 1.4E-30 3E-35 245.1 16.2 202 137-342 180-417 (492)
34 KOG1189 Global transcriptional 99.8 3E-20 6.4E-25 187.5 16.3 208 126-339 121-344 (960)
35 KOG2413 Xaa-Pro aminopeptidase 99.8 3.2E-20 6.8E-25 184.8 15.2 204 137-345 302-521 (606)
36 KOG2775 Metallopeptidase [Gene 99.7 1.7E-15 3.7E-20 139.7 14.5 193 143-345 80-291 (397)
37 COG5406 Nucleosome binding fac 99.6 6.6E-15 1.4E-19 146.6 14.3 206 131-339 159-385 (1001)
38 KOG2776 Metallopeptidase [Gene 99.6 2.4E-14 5.2E-19 135.1 16.0 168 141-310 14-195 (398)
39 PLN03144 Carbon catabolite rep 99.3 3.7E-13 8E-18 138.2 3.1 49 14-62 64-113 (606)
40 PF01753 zf-MYND: MYND finger; 98.0 3E-06 6.5E-11 55.3 1.3 35 15-56 1-35 (37)
41 cd01066 APP_MetAP A family inc 97.5 0.0015 3.2E-08 57.7 12.0 102 149-252 102-204 (207)
42 KOG1710 MYND Zn-finger and ank 97.5 3.2E-05 7E-10 72.1 1.1 39 14-59 321-360 (396)
43 cd01092 APP-like Similar to Pr 97.3 0.0032 6.9E-08 56.3 11.4 101 149-251 103-204 (208)
44 PLN03158 methionine aminopepti 97.2 0.0021 4.4E-08 64.0 9.9 103 239-343 126-234 (396)
45 PRK05716 methionine aminopepti 97.1 0.0052 1.1E-07 56.9 11.2 100 150-252 119-240 (252)
46 PRK15173 peptidase; Provisiona 97.0 0.008 1.7E-07 58.2 11.7 104 149-252 202-306 (323)
47 TIGR00500 met_pdase_I methioni 97.0 0.0094 2E-07 55.1 11.6 100 150-252 117-238 (247)
48 cd01086 MetAP1 Methionine Amin 96.9 0.008 1.7E-07 55.2 10.3 88 255-342 2-91 (238)
49 PRK09795 aminopeptidase; Provi 96.9 0.014 3.1E-07 57.2 12.4 106 144-251 235-341 (361)
50 cd01090 Creatinase Creatine am 96.9 0.015 3.3E-07 53.4 11.7 100 150-252 110-220 (228)
51 PRK14575 putative peptidase; P 96.8 0.011 2.5E-07 58.9 11.7 101 150-252 286-389 (406)
52 PRK12897 methionine aminopepti 96.8 0.011 2.4E-07 54.9 10.4 100 150-252 118-239 (248)
53 PRK14576 putative endopeptidas 96.7 0.017 3.7E-07 57.7 11.9 104 149-252 284-388 (405)
54 cd01091 CDC68-like Related to 96.7 0.017 3.8E-07 53.6 10.6 100 149-252 119-234 (243)
55 TIGR02993 ectoine_eutD ectoine 96.6 0.017 3.7E-07 57.4 11.0 99 150-252 271-374 (391)
56 PRK12318 methionine aminopepti 96.6 0.023 5E-07 54.2 11.1 86 150-238 159-247 (291)
57 cd01087 Prolidase Prolidase. E 96.5 0.026 5.7E-07 52.0 10.9 103 150-252 104-235 (243)
58 PRK12896 methionine aminopepti 96.5 0.033 7.1E-07 51.7 11.4 100 150-252 124-246 (255)
59 PRK07281 methionine aminopepti 96.4 0.028 6E-07 53.6 10.7 85 150-237 149-237 (286)
60 cd01088 MetAP2 Methionine Amin 96.4 0.021 4.6E-07 54.5 9.5 82 255-343 2-87 (291)
61 PRK08671 methionine aminopepti 96.2 0.086 1.9E-06 50.3 12.6 97 150-251 102-205 (291)
62 cd01089 PA2G4-like Related to 96.2 0.042 9.2E-07 50.3 10.2 99 149-252 120-220 (228)
63 PF00557 Peptidase_M24: Metall 96.1 0.038 8.3E-07 49.4 9.3 96 151-251 104-206 (207)
64 KOG2738 Putative methionine am 96.1 0.035 7.5E-07 52.5 8.9 89 256-346 124-217 (369)
65 COG0006 PepP Xaa-Pro aminopept 95.9 0.079 1.7E-06 52.4 11.4 101 150-252 263-367 (384)
66 TIGR00501 met_pdase_II methion 95.5 0.1 2.2E-06 49.9 9.9 98 151-250 106-207 (295)
67 TIGR00495 crvDNA_42K 42K curve 95.5 0.11 2.5E-06 51.6 10.5 96 150-245 139-242 (389)
68 COG0024 Map Methionine aminope 95.0 0.28 6E-06 45.9 10.7 96 149-245 120-218 (255)
69 PRK10879 proline aminopeptidas 94.8 0.33 7.1E-06 49.1 11.6 101 151-252 284-411 (438)
70 PTZ00053 methionine aminopepti 94.0 0.37 8.1E-06 48.9 10.0 99 150-251 264-376 (470)
71 PF04438 zf-HIT: HIT zinc fing 92.8 0.05 1.1E-06 33.7 1.0 28 13-48 3-30 (30)
72 cd01085 APP X-Prolyl Aminopept 92.3 2.4 5.3E-05 38.7 11.9 96 152-251 114-215 (224)
73 PRK13607 proline dipeptidase; 91.5 1.7 3.6E-05 44.1 10.7 88 152-239 271-391 (443)
74 PF09889 DUF2116: Uncharacteri 89.9 0.2 4.3E-06 36.1 1.7 33 25-59 5-37 (59)
75 KOG2857 Predicted MYND Zn-fing 86.0 2.4 5.1E-05 35.9 5.9 29 13-49 6-35 (157)
76 PRK00418 DNA gyrase inhibitor; 84.7 0.55 1.2E-05 34.2 1.4 30 22-51 5-37 (62)
77 PRK01343 zinc-binding protein; 84.0 0.57 1.2E-05 33.5 1.2 26 24-50 10-35 (57)
78 KOG1189 Global transcriptional 80.8 6.5 0.00014 42.0 7.9 99 150-252 258-368 (960)
79 COG3024 Uncharacterized protei 80.2 1.1 2.3E-05 32.7 1.5 13 38-50 25-37 (65)
80 cd02249 ZZ Zinc finger, ZZ typ 77.7 0.64 1.4E-05 31.5 -0.2 37 14-58 2-41 (46)
81 PF03884 DUF329: Domain of unk 77.6 0.73 1.6E-05 33.0 0.0 27 24-50 3-32 (57)
82 KOG3612 PHD Zn-finger protein 77.2 0.81 1.8E-05 46.6 0.2 39 15-62 530-568 (588)
83 PF02069 Metallothio_Pro: Prok 72.3 1.7 3.6E-05 30.5 0.7 26 25-50 9-39 (52)
84 COG3350 Uncharacterized conser 70.2 1.8 4E-05 30.3 0.6 10 39-48 28-37 (53)
85 KOG2775 Metallopeptidase [Gene 66.9 29 0.00063 33.3 7.9 79 255-336 86-170 (397)
86 cd01666 TGS_DRG_C TGS_DRG_C: 66.2 21 0.00045 26.9 5.7 52 169-231 21-73 (75)
87 cd02335 ZZ_ADA2 Zinc finger, Z 60.1 2.5 5.5E-05 29.0 -0.3 37 14-58 2-44 (49)
88 PF06467 zf-FCS: MYM-type Zinc 59.8 5 0.00011 26.3 1.1 36 13-49 7-42 (43)
89 COG4306 Uncharacterized protei 59.1 1.8 3.9E-05 35.9 -1.4 21 11-31 27-47 (160)
90 cd02341 ZZ_ZZZ3 Zinc finger, Z 59.1 3.3 7.2E-05 28.5 0.1 39 14-59 2-44 (48)
91 PRK04023 DNA polymerase II lar 59.0 5.3 0.00011 44.0 1.7 39 3-44 617-656 (1121)
92 cd02340 ZZ_NBR1_like Zinc fing 55.6 4.1 8.8E-05 27.3 0.1 34 14-58 2-38 (43)
93 cd02345 ZZ_dah Zinc finger, ZZ 55.6 3.7 8E-05 28.3 -0.1 37 14-58 2-44 (49)
94 PF13824 zf-Mss51: Zinc-finger 52.0 14 0.0003 26.3 2.3 37 15-58 2-42 (55)
95 PF10571 UPF0547: Uncharacteri 51.4 7.3 0.00016 23.2 0.7 17 14-30 2-21 (26)
96 PF13248 zf-ribbon_3: zinc-rib 51.4 7.9 0.00017 22.8 0.9 17 13-29 3-22 (26)
97 KOG2858 Uncharacterized conser 50.3 7.5 0.00016 37.8 1.0 34 8-49 13-47 (390)
98 COG1996 RPC10 DNA-directed RNA 49.6 6.3 0.00014 27.3 0.3 22 9-30 3-31 (49)
99 cd02334 ZZ_dystrophin Zinc fin 48.5 5.4 0.00012 27.6 -0.2 37 14-58 2-44 (49)
100 cd02338 ZZ_PCMF_like Zinc fing 48.1 5.5 0.00012 27.4 -0.2 29 14-50 2-34 (49)
101 cd02344 ZZ_HERC2 Zinc finger, 45.9 6.4 0.00014 26.7 -0.1 35 14-58 2-40 (45)
102 COG5406 Nucleosome binding fac 45.8 72 0.0016 33.8 7.2 71 160-234 309-384 (1001)
103 PF05184 SapB_1: Saposin-like 44.5 53 0.0011 20.7 4.1 34 154-187 3-36 (39)
104 PRK00398 rpoP DNA-directed RNA 43.2 10 0.00022 25.5 0.6 21 11-31 2-29 (46)
105 PF12855 Ecl1: Life-span regul 41.5 13 0.00029 24.9 0.9 17 37-53 21-37 (43)
106 PF09297 zf-NADH-PPase: NADH p 40.5 9.9 0.00021 23.5 0.1 20 12-31 3-29 (32)
107 cd02339 ZZ_Mind_bomb Zinc fing 40.2 8.3 0.00018 26.1 -0.3 35 14-58 2-40 (45)
108 PF00254 FKBP_C: FKBP-type pep 38.5 65 0.0014 24.4 4.6 51 220-279 2-59 (94)
109 cd02343 ZZ_EF Zinc finger, ZZ 37.1 9.3 0.0002 26.3 -0.4 29 14-50 2-33 (48)
110 PF03833 PolC_DP2: DNA polymer 37.1 11 0.00024 40.8 0.0 41 4-48 647-688 (900)
111 PF12773 DZR: Double zinc ribb 35.6 22 0.00048 24.0 1.3 31 11-43 11-47 (50)
112 PRK14891 50S ribosomal protein 35.2 18 0.00039 30.1 0.9 37 11-50 3-41 (131)
113 PRK14890 putative Zn-ribbon RN 35.0 21 0.00045 25.7 1.1 21 14-34 27-47 (59)
114 KOG2414 Putative Xaa-Pro amino 35.0 2.2E+02 0.0048 28.7 8.4 113 232-348 324-468 (488)
115 COG4416 Com Mu-like prophage p 34.9 11 0.00023 26.6 -0.4 22 13-34 5-35 (60)
116 TIGR00115 tig trigger factor. 33.7 2E+02 0.0043 28.5 8.3 56 173-252 120-180 (408)
117 PF09538 FYDLN_acid: Protein o 33.4 19 0.00042 29.2 0.8 21 12-32 9-35 (108)
118 smart00659 RPOLCX RNA polymera 33.1 18 0.0004 24.3 0.5 18 13-30 3-26 (44)
119 PF13240 zinc_ribbon_2: zinc-r 33.1 21 0.00045 20.5 0.7 7 15-21 2-8 (23)
120 COG4068 Uncharacterized protei 33.0 17 0.00038 26.0 0.4 23 24-48 9-31 (64)
121 cd04938 TGS_Obg-like TGS_Obg-l 32.9 77 0.0017 23.8 4.0 47 169-231 28-74 (76)
122 PRK14714 DNA polymerase II lar 32.1 21 0.00045 40.6 1.0 24 141-164 837-860 (1337)
123 PRK01490 tig trigger factor; P 31.5 1.5E+02 0.0033 29.6 7.1 33 220-252 155-191 (435)
124 PRK14559 putative protein seri 30.5 30 0.00065 36.9 1.9 31 12-44 15-46 (645)
125 PF03604 DNA_RNApol_7kD: DNA d 30.3 26 0.00057 21.9 0.9 17 14-30 2-24 (32)
126 PF10415 FumaraseC_C: Fumarase 30.2 70 0.0015 22.5 3.1 34 150-183 10-48 (55)
127 PF12631 GTPase_Cys_C: Catalyt 30.0 1.2E+02 0.0026 22.4 4.6 42 253-294 10-51 (73)
128 PF04945 YHS: YHS domain; Int 29.6 21 0.00045 24.0 0.4 11 39-49 25-35 (47)
129 PF02829 3H: 3H domain; Inter 29.3 95 0.002 24.7 4.1 66 230-297 24-96 (98)
130 PF13717 zinc_ribbon_4: zinc-r 29.2 25 0.00053 22.5 0.6 19 13-31 3-33 (36)
131 PF11023 DUF2614: Protein of u 29.1 20 0.00043 29.2 0.2 21 12-32 69-94 (114)
132 PF04181 RPAP2_Rtr1: Rtr1/RPAP 28.8 22 0.00048 26.8 0.4 12 39-50 59-70 (79)
133 PF10013 DUF2256: Uncharacteri 28.6 21 0.00046 23.8 0.3 34 9-48 5-40 (42)
134 COG1054 Predicted sulfurtransf 28.4 42 0.0009 32.2 2.2 50 4-58 235-288 (308)
135 PRK12495 hypothetical protein; 27.9 26 0.00056 32.0 0.7 27 8-34 38-69 (226)
136 PF07754 DUF1610: Domain of un 27.9 27 0.00059 20.4 0.6 7 24-30 17-23 (24)
137 PRK12380 hydrogenase nickel in 27.3 29 0.00063 28.3 0.9 22 13-34 71-97 (113)
138 COG4338 Uncharacterized protei 26.2 17 0.00037 25.0 -0.6 41 1-47 1-43 (54)
139 PF14446 Prok-RING_1: Prokaryo 26.2 31 0.00067 24.4 0.7 21 11-31 4-29 (54)
140 PF05142 DUF702: Domain of unk 25.9 23 0.00051 30.4 0.1 16 13-28 5-20 (154)
141 PF01155 HypA: Hydrogenase exp 25.9 19 0.0004 29.3 -0.5 23 12-34 70-97 (113)
142 KOG2611 Neurochondrin/leucine- 25.9 41 0.0009 34.5 1.8 69 226-294 584-662 (698)
143 PF07305 DUF1454: Protein of u 25.7 3.9E+02 0.0084 24.0 7.6 74 254-339 114-188 (200)
144 PF09506 Salt_tol_Pase: Glucos 25.3 2.5E+02 0.0054 27.6 6.8 129 143-272 97-281 (381)
145 TIGR02098 MJ0042_CXXC MJ0042 f 25.1 33 0.00071 21.8 0.7 8 24-31 26-33 (38)
146 TIGR00100 hypA hydrogenase nic 25.1 34 0.00073 27.9 0.9 22 13-34 71-97 (115)
147 TIGR02300 FYDLN_acid conserved 24.8 34 0.00075 28.5 0.9 21 12-32 9-35 (129)
148 PF10122 Mu-like_Com: Mu-like 24.7 22 0.00048 24.8 -0.2 22 13-34 5-35 (51)
149 PF03477 ATP-cone: ATP cone do 24.7 51 0.0011 25.0 1.8 34 158-191 41-74 (90)
150 PRK05728 DNA polymerase III su 24.5 4.2E+02 0.0092 22.2 7.9 103 150-261 14-120 (142)
151 TIGR02399 salt_tol_Pase glucos 23.4 2.7E+02 0.006 27.4 6.7 129 143-272 103-286 (389)
152 PRK00420 hypothetical protein; 23.3 29 0.00062 28.4 0.1 25 9-33 20-50 (112)
153 PF14205 Cys_rich_KTR: Cystein 22.9 33 0.00071 24.3 0.3 11 24-34 29-39 (55)
154 TIGR00354 polC DNA polymerase, 22.4 38 0.00082 37.5 0.8 36 5-43 618-654 (1095)
155 PF08394 Arc_trans_TRASH: Arch 21.7 39 0.00084 22.0 0.5 33 15-50 1-33 (37)
156 cd01669 TGS_Ygr210_C TGS_Ygr21 21.4 2.4E+02 0.0051 21.2 4.8 48 169-231 27-74 (76)
157 PF00249 Myb_DNA-binding: Myb- 21.1 1.7E+02 0.0037 19.4 3.7 41 144-184 5-46 (48)
158 COG2888 Predicted Zn-ribbon RN 20.9 48 0.001 23.9 0.9 20 15-34 30-49 (61)
159 PTZ00107 hexokinase; Provision 20.9 9.1E+02 0.02 24.7 12.6 80 217-298 67-210 (464)
160 COG0544 Tig FKBP-type peptidyl 20.7 1.8E+02 0.0039 29.5 5.3 18 223-240 158-175 (441)
161 PF13719 zinc_ribbon_5: zinc-r 20.7 45 0.00098 21.4 0.6 7 24-30 26-32 (37)
162 smart00834 CxxC_CXXC_SSSS Puta 20.5 51 0.0011 21.0 0.9 19 13-31 6-34 (41)
163 PRK03681 hypA hydrogenase nick 20.2 48 0.001 27.0 0.9 22 13-34 71-98 (114)
164 PRK06646 DNA polymerase III su 20.1 5.6E+02 0.012 22.0 7.6 39 149-188 13-51 (154)
No 1
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-93 Score=651.27 Aligned_cols=312 Identities=58% Similarity=0.996 Sum_probs=296.1
Q ss_pred cccccccc--cCCccccccchhhhcCCCCCCccccChhhhhhchhHHHHhhhhcccCCCCCCCCCCccccccchhcccCC
Q 018857 10 TTSLSCVR--CGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQ 87 (349)
Q Consensus 10 ~~~~~c~~--c~~~~~l~c~~c~~~~~~~~~~~fc~~~cf~~~w~~hk~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (349)
.....|++ |+++++||||+|+|++|+ ++|||+|+|||.+|.+||++|.++. . ....
T Consensus 4 ~~~~~c~~~~c~~~a~l~Cp~c~~~~i~--~~~fc~q~cf~~~w~~hK~~h~~~~---------------~-----~~~~ 61 (369)
T KOG2738|consen 4 IAKISCEGLQCGSEASLQCPTCLKLGIK--SAYFCAQECFKNSWLSHKKLHRKAL---------------R-----IRKE 61 (369)
T ss_pred chhceeeccccCChhhccCchhhhcCCC--cccccCchhhhcchhhhhhhcccch---------------h-----hhhh
Confidence 34567976 999999999999999997 6899999999999999999997442 0 1345
Q ss_pred CCCCCCCCCcccCccccccCCCCcccCCCCCCCccccCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018857 88 ARTPKLPHFDWTGTLRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAAR 167 (349)
Q Consensus 88 ~~~~~~~~~~~~g~~~p~~~~~~~~vp~~i~~p~ya~~g~~~~e~~~~~~~~r~vKs~~EIe~~R~A~~ia~~~l~~~~~ 167 (349)
+.++|||.|.|+|+||||++||+|.||++|+||+||++|.+.+|+....+....|+++++|+.||+||+|++++++.|..
T Consensus 62 g~~~p~p~~~~~g~Lr~~pvsprr~VP~hI~rPdya~~g~s~se~~~~~s~~i~i~~~e~ie~mR~ac~LarevLd~Aa~ 141 (369)
T KOG2738|consen 62 GQYNPWPKFRFTGPLRPGPVSPRRPVPDHIPRPDYADSGVSLSEQPEISSNEIKILDPEGIEGMRKACRLAREVLDYAAT 141 (369)
T ss_pred ccCCCCccccccCCccccCCCCCCcCCccCCCCchhhcCCcccccccccccceeccCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67889999999999999999999999999999999999999999988888788999999999999999999999999999
Q ss_pred hccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCcccccCCCCCCCCCCCEEEEEeeceeCcEEeceece
Q 018857 168 MIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNET 247 (349)
Q Consensus 168 ~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~H~~p~~r~L~~GDiv~iD~g~~~~GY~~D~~RT 247 (349)
+++||+|++|||+++|++++++|+|||||||++||+++|+|+|+++|||+||.|+|++||||+||++++++|||+|+++|
T Consensus 142 ~v~PgvTTdEiD~~VH~a~Ierg~YPSPLnYy~FPKS~CTSVNEviCHGIPD~RpLedGDIvNiDVtvY~~GyHGDlneT 221 (369)
T KOG2738|consen 142 LVRPGVTTDEIDRAVHNAIIERGAYPSPLNYYGFPKSVCTSVNEVICHGIPDSRPLEDGDIVNIDVTVYLNGYHGDLNET 221 (369)
T ss_pred hcCCCccHHHHHHHHHHHHHhcCCcCCCcccCCCchhhhcchhheeecCCCCcCcCCCCCEEeEEEEEEeccccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHcCCCcccCcccccCCCcCccCCCcCCCCCCCC-
Q 018857 248 YFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHYSSLYH- 326 (349)
Q Consensus 248 ~~vG~~~~~~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~~~~~~~~GHgIG~~~he~P~i~~~~~~~~- 326 (349)
|++|+++++.++|+++++||++.||+++|||++++||++.|++++.++||++++.|||||||..||..|+|+||++|..
T Consensus 222 ffvG~Vde~~k~LVkvT~EcL~kaI~~~kpGv~freiG~iI~kha~~~g~sVVr~ycGHGig~~FH~~PnipHya~n~a~ 301 (369)
T KOG2738|consen 222 FFVGNVDEKAKKLVKVTRECLEKAIAIVKPGVSFREIGNIIQKHATKNGYSVVRSYCGHGIGRVFHCAPNIPHYAKNKAP 301 (369)
T ss_pred eEeeccCHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhhhcCceeehhhhccccccccccCCCchhhcccCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred -cccCce-EEEecceEEcC
Q 018857 327 -AFQPHI-FYIQKSFYFMD 343 (349)
Q Consensus 327 -~Le~GM-ftIEPgly~~~ 343 (349)
++.+|| |||||-|-+..
T Consensus 302 GvM~~G~tFTIEPmit~G~ 320 (369)
T KOG2738|consen 302 GVMKPGQTFTIEPMITIGT 320 (369)
T ss_pred ceeecCceEEeeeeecccc
Confidence 899999 99999887643
No 2
>PLN03158 methionine aminopeptidase; Provisional
Probab=100.00 E-value=7.1e-89 Score=667.05 Aligned_cols=335 Identities=79% Similarity=1.343 Sum_probs=312.0
Q ss_pred CCccccccccccccCCccccccchhhhcCCCCCCccccChhhhhhchhHHHHhhhhcccCCCCCCCCCCccccccchhcc
Q 018857 5 SDAAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIK 84 (349)
Q Consensus 5 ~~~~~~~~~~c~~c~~~~~l~c~~c~~~~~~~~~~~fc~~~cf~~~w~~hk~~h~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (349)
.+++++.++.|++|+|+|+||||+|+|+|++...||||||+|||.+|++||.+|+..+...+ +++.....+.|.||..
T Consensus 2 ~~~~~~~~~~c~~c~~~a~l~Cp~C~k~~~~~~~s~fCsq~CFk~~w~~Hk~~h~~~~~~~~--~~~~~~~~~~~~~~~~ 79 (396)
T PLN03158 2 EEALTTSPLACARCSKPAHLQCPKCLELKLPREGASFCSQDCFKAAWSSHKSVHTKAKLSSI--GQNSDAPAEGWLYCLK 79 (396)
T ss_pred CcccCCCcccccCCCCcccccCccchhcCCCCCCceeECHHHHHHHHHHHHHHHHhhhhccc--cccccccccccccccc
Confidence 35677788899999999999999999999976789999999999999999999975431111 1223334568999998
Q ss_pred cCCCCCCCCCCCcccCccccccCCCCcccCCCCCCCccccCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHHH
Q 018857 85 KGQARTPKLPHFDWTGTLRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDA 164 (349)
Q Consensus 85 ~~~~~~~~~~~~~~~g~~~p~~~~~~~~vp~~i~~p~ya~~g~~~~e~~~~~~~~r~vKs~~EIe~~R~A~~ia~~~l~~ 164 (349)
.+...+++||+|.|||+||||++||++.||+||++|+|+.+|.|.++.....+..|+|||++||+.||+|++|+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~p~y~~~~~~~~~~~~~~~~~~~IKsp~EIe~mR~A~~ia~~al~~ 159 (396)
T PLN03158 80 KGQARTSKLPDFDWTGPLRPYPISPRRVVPDHIPKPDWALDGTPKIEPNSDLQHSVEIKTPEQIQRMRETCRIAREVLDA 159 (396)
T ss_pred ccccccCCCCCCCCCcccccCCCCCCCCCCccCCCCccccCCCCccccccccccceeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999888777777889999999999999999999999999
Q ss_pred HHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCcccccCCCCCCCCCCCEEEEEeeceeCcEEece
Q 018857 165 AARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDL 244 (349)
Q Consensus 165 ~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~H~~p~~r~L~~GDiv~iD~g~~~~GY~~D~ 244 (349)
+.++++||+||.||+++++++++++|++|++++|.+||+++|+|.|++++|++|++++|++||+|+||++++++||++|+
T Consensus 160 a~~~irpGvTe~EI~~~v~~~~~~~Ga~ps~l~y~~fp~svcts~N~~i~Hgip~~r~L~~GDiV~iDvg~~~~GY~aD~ 239 (396)
T PLN03158 160 AARAIKPGVTTDEIDRVVHEATIAAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDARKLEDGDIVNVDVTVYYKGCHGDL 239 (396)
T ss_pred HHHHccCCCCHHHHHHHHHHHHHHcCCccccccccCCCceeeecccccccCCCCCCccCCCCCEEEEEEeEEECCEEEeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eceEeeCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHcCCCcccCcccccCCCcCccCCCcCCCCCC
Q 018857 245 NETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHYSSL 324 (349)
Q Consensus 245 ~RT~~vG~~~~~~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~~~~~~~~GHgIG~~~he~P~i~~~~~~ 324 (349)
+|||+||++++++++++++++++++++|+++|||++++||+++++++++++||+++++|+|||||+.+||.|+|++|.++
T Consensus 240 tRT~~VG~~~~e~~~l~e~~~eal~~aI~~vkPGv~~~dI~~~i~~~~~~~G~~~v~~~~GHGIG~~~He~P~i~~~~~~ 319 (396)
T PLN03158 240 NETFFVGNVDEASRQLVKCTYECLEKAIAIVKPGVRYREVGEVINRHATMSGLSVVKSYCGHGIGELFHCAPNIPHYARN 319 (396)
T ss_pred EeEEEcCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCccCCccCCccccccCCCCCCCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred C--CcccCce-EEEecceEE
Q 018857 325 Y--HAFQPHI-FYIQKSFYF 341 (349)
Q Consensus 325 ~--~~Le~GM-ftIEPgly~ 341 (349)
+ .+|+||| |+|||++|+
T Consensus 320 ~~~~~l~~GMVfTIEP~i~~ 339 (396)
T PLN03158 320 KAVGVMKAGQVFTIEPMINA 339 (396)
T ss_pred CCCCEecCCcEEEECCeecc
Confidence 5 6999999 999999986
No 3
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.7e-47 Score=348.80 Aligned_cols=201 Identities=42% Similarity=0.693 Sum_probs=191.2
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCcccccCCC-
Q 018857 141 EIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPD- 219 (349)
Q Consensus 141 ~vKs~~EIe~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~H~~p~- 219 (349)
.+||++||+.||+|++|++++++.+.+.++||+|+.||+.++++++.++|++|++++|.+||..+|+|.|+.++|++|+
T Consensus 4 ~ikt~~eiek~r~Ag~i~a~~l~~~~~~v~pGvtt~Eld~~~~~~i~~~ga~pa~~gy~g~~~~~ciSvNe~v~HgiP~d 83 (255)
T COG0024 4 SIKTPEEIEKMREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREKGAYPAFLGYKGFPFPTCISVNEVVAHGIPGD 83 (255)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCceehhccCcCCCcceEeehhheeeecCCCC
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCCCEEEEEeeceeCcEEeceeceEeeCCCC-HHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHcCCC
Q 018857 220 SRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNAD-EASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFS 298 (349)
Q Consensus 220 ~r~L~~GDiv~iD~g~~~~GY~~D~~RT~~vG~~~-~~~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~~ 298 (349)
+++|++||+|+||+|+.++||++|.++||.||+.+ +..++|.+++.+|+.++|+.+|||++++||+++|+++++++||+
T Consensus 84 ~~vlk~GDiv~IDvg~~~dG~~~Dsa~T~~vg~~~~~~~~~L~~~t~eal~~~I~~vkpG~~l~~Ig~aIq~~~~~~G~~ 163 (255)
T COG0024 84 KKVLKEGDIVKIDVGAHIDGYIGDTAITFVVGEVSDEDAKRLLEATKEALYAGIEAVKPGARLGDIGRAIQEYAESRGFS 163 (255)
T ss_pred CcccCCCCEEEEEEEEEECCeeeeEEEEEECCCCChHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCE
Confidence 67999999999999999999999999999999766 47777999999999999999999999999999999999999999
Q ss_pred cccCcccccCCCcCccCCCcCCCCCC--CCcccCce-EEEecceEE
Q 018857 299 VVKSYCGHGIGELFHCAPNIPHYSSL--YHAFQPHI-FYIQKSFYF 341 (349)
Q Consensus 299 ~~~~~~GHgIG~~~he~P~i~~~~~~--~~~Le~GM-ftIEPgly~ 341 (349)
+++.|+|||||..+||.|+|++|.++ ...|++|| |+|||-+-.
T Consensus 164 vVr~~~GHgig~~~He~p~ip~y~~~~~~~~l~~Gmv~aIEPmi~~ 209 (255)
T COG0024 164 VVRNLTGHGIGRELHEEPSIPNYGKDGTGVRLKEGMVFAIEPMINT 209 (255)
T ss_pred EeecccCCccCcccCCCCeeccccCCCCCcccCCCCEEEEeeEEEc
Confidence 99999999999999999999998654 35999999 999996543
No 4
>PRK07281 methionine aminopeptidase; Reviewed
Probab=100.00 E-value=4.9e-46 Score=351.74 Aligned_cols=204 Identities=24% Similarity=0.442 Sum_probs=192.4
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCC----CCCCceeeecCCCccc
Q 018857 139 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNY----HFFPKSCCTSVNEVIC 214 (349)
Q Consensus 139 ~r~vKs~~EIe~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~----~~fp~~v~~g~n~~~~ 214 (349)
++.|||++||+.||+|++|++++++++.+.++||+||.||++.++..+.+.|+.++.+++ .+||.++|+|.|..++
T Consensus 1 m~~iKs~~EI~~mr~A~~i~~~~~~~~~~~i~pG~te~ei~~~~~~~~~~~g~~~~~~G~~~~~~~f~~~v~~G~n~~~~ 80 (286)
T PRK07281 1 MITLKSAREIEAMDRAGDFLASIHIGLRDLIKPGVDMWEVEEYVRRRCKEENVLPLQIGVDGAMMDYPYATCCGLNDEVA 80 (286)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHHcCCcccccCCCCcccCCCcceEEecccccc
Confidence 357999999999999999999999999999999999999999999999999998877654 4699999999999999
Q ss_pred ccCCCCCCCCCCCEEEEEeec---------------------------eeCcEEeceeceEeeCCCCHHHHHHHHHHHHH
Q 018857 215 HGIPDSRKLEDGDIVNIDVTV---------------------------YYKGVHGDLNETYFVGNADEASRQLVQCTYEC 267 (349)
Q Consensus 215 H~~p~~r~L~~GDiv~iD~g~---------------------------~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea 267 (349)
|+.|++++|++||+|+||+++ .|+||++|++|||++|++++++++++++++++
T Consensus 81 H~~p~~~~l~~Gd~v~iD~g~~~~~~~y~~d~~~~~~~~~~~~~~~~~~~~gy~~D~~rT~~vG~~~~~~~~l~~~~~ea 160 (286)
T PRK07281 81 HAFPRHYILKEGDLLKVDMVLSEPLDKSIVDVSKLNFDNVEQMKKYTESYRGGLADSCWAYAVGTPSDEVKNLMDVTKEA 160 (286)
T ss_pred CCCCCCcCcCCCCEEEEEecccccccccccccccccccccccccccccccCCEEeeeEEEEECCCCCHHHHHHHHHHHHH
Confidence 999999999999999999997 48999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCcHhHHHHHHHHHHHHcCCCcccCcccccCCCcCccCCCcCCC--CCCCCcccCce-EEEecceEEc
Q 018857 268 LEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHY--SSLYHAFQPHI-FYIQKSFYFM 342 (349)
Q Consensus 268 ~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~~~~~~~~GHgIG~~~he~P~i~~~--~~~~~~Le~GM-ftIEPgly~~ 342 (349)
++++++++|||++++||++++++++++.||..+.+++|||||+.+||.|.++++ .+++.+|++|| |+|||++|+.
T Consensus 161 ~~~ai~~~kpG~~~~di~~a~~~~~~~~G~~~~~~~~GHGIGl~~hE~P~i~~~~~~~~~~~Le~GMV~tiEPgiy~~ 238 (286)
T PRK07281 161 MYRGIEQAVVGNRIGDIGAAIQEYAESRGYGVVRDLVGHGVGPTMHEEPMVPNYGTAGRGLRLREGMVLTIEPMINTG 238 (286)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHcCCccCCCeeeeeCCCccCCCCcCCCcccCCCCCEECCCCEEEECCeeEcC
Confidence 999999999999999999999999999999988889999999999999999765 45678999999 9999999984
No 5
>PRK12897 methionine aminopeptidase; Reviewed
Probab=100.00 E-value=1.1e-45 Score=343.60 Aligned_cols=202 Identities=31% Similarity=0.508 Sum_probs=191.3
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCcccccCCC
Q 018857 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPD 219 (349)
Q Consensus 140 r~vKs~~EIe~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~H~~p~ 219 (349)
..|||++||+.||+|+++++++++++.+.++||+||.||++.++.++.++|+.....++.+||.++++|.|+..+|+.|+
T Consensus 2 ~~iKs~~EI~~~r~A~~i~~~~~~~~~~~~~~G~tE~el~~~~~~~~~~~G~~~~~~~~~~~~~~i~~g~n~~~~H~~p~ 81 (248)
T PRK12897 2 ITIKTKNEIDLMHESGKLLASCHREIAKIMKPGITTKEINTFVEAYLEKHGATSEQKGYNGYPYAICASVNDEMCHAFPA 81 (248)
T ss_pred ceeCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccCCCCcceEeccCCEeecCCCC
Confidence 47999999999999999999999999999999999999999999999999998655556779888999999999999999
Q ss_pred CCCCCCCCEEEEEeeceeCcEEeceeceEeeCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHcCCCc
Q 018857 220 SRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSV 299 (349)
Q Consensus 220 ~r~L~~GDiv~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~~~ 299 (349)
+++|++||+|++|+++.++||++|++|||++|+++++++++++++.++++++++++|||++++||++++++++++.||..
T Consensus 82 ~~~l~~Gd~V~iD~g~~~~GY~sD~tRT~~vG~~s~~~~~~~~~~~~a~~~~i~~~kpG~~~~dv~~a~~~~~~~~g~~~ 161 (248)
T PRK12897 82 DVPLTEGDIVTIDMVVNLNGGLSDSAWTYRVGKVSDEAEKLLLVAENALYKGIDQAVIGNRVGDIGYAIESYVANEGFSV 161 (248)
T ss_pred CcccCCCCEEEEEeeEEECCEEEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCcccccCCCcCccCCCcCCC--CCCCCcccCce-EEEecceEE
Q 018857 300 VKSYCGHGIGELFHCAPNIPHY--SSLYHAFQPHI-FYIQKSFYF 341 (349)
Q Consensus 300 ~~~~~GHgIG~~~he~P~i~~~--~~~~~~Le~GM-ftIEPgly~ 341 (349)
.++++|||||+.+||.|.+.++ .+++.+|++|| |+|||++|+
T Consensus 162 ~~~~~GHgiGl~~hE~P~i~~~~~~~~~~~l~~Gmv~tiEP~~~~ 206 (248)
T PRK12897 162 ARDFTGHGIGKEIHEEPAIFHFGKQGQGPELQEGMVITIEPIVNV 206 (248)
T ss_pred CCCeEECccCCcccCCCccCCCCCCCCCCCcCCCCEEEECCeEec
Confidence 8899999999999999998754 35567999999 999999994
No 6
>PRK12318 methionine aminopeptidase; Provisional
Probab=100.00 E-value=2.6e-45 Score=348.26 Aligned_cols=205 Identities=42% Similarity=0.759 Sum_probs=192.5
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCC--CCCceeeecCCCcccccC
Q 018857 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYH--FFPKSCCTSVNEVICHGI 217 (349)
Q Consensus 140 r~vKs~~EIe~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~--~fp~~v~~g~n~~~~H~~ 217 (349)
++|||++||+.||+|++|++++++++++.++||+||.||++++++.+.+.|+.|+.++|. +||.++++|.|+.++|+.
T Consensus 41 i~IKs~~EIe~~R~Aa~I~~~a~~a~~~~irpG~tE~Eiaa~~~~~~~~~G~~~~~~~~~~~~f~~~v~~g~n~~~~H~~ 120 (291)
T PRK12318 41 IIIKTPEQIEKIRKACQVTARILDALCEAAKEGVTTNELDELSRELHKEYNAIPAPLNYGSPPFPKTICTSLNEVICHGI 120 (291)
T ss_pred eEECCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCccccccCCCCCCcceEeeccceeecCC
Confidence 469999999999999999999999999999999999999999998888899988777664 599999999999999999
Q ss_pred CCCCCCCCCCEEEEEeeceeCcEEeceeceEeeCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHcCC
Q 018857 218 PDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGF 297 (349)
Q Consensus 218 p~~r~L~~GDiv~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~ 297 (349)
|++++|++||+|++|+++.++||++|++|||++|+++++++++++++.++++++++++|||++++||++++++++++.||
T Consensus 121 p~~~~l~~GD~V~vD~g~~~~GY~aDitRT~~vG~~~~~~~~~~~~~~~a~~~~i~~~rpG~~~~dv~~a~~~~~~~~G~ 200 (291)
T PRK12318 121 PNDIPLKNGDIMNIDVSCIVDGYYGDCSRMVMIGEVSEIKKKVCQASLECLNAAIAILKPGIPLYEIGEVIENCADKYGF 200 (291)
T ss_pred CCCCccCCCCEEEEEEeEEECcEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCcccccCCCcCccCCCcCCCC-CCCCcccCce-EEEecceEEcCC
Q 018857 298 SVVKSYCGHGIGELFHCAPNIPHYS-SLYHAFQPHI-FYIQKSFYFMDN 344 (349)
Q Consensus 298 ~~~~~~~GHgIG~~~he~P~i~~~~-~~~~~Le~GM-ftIEPgly~~~~ 344 (349)
....+++|||||+.+||.|.|+.+. +++.+|++|| |+|||++|+++.
T Consensus 201 ~~~~~~~GHgIGl~~hE~P~i~~~~~~~~~~L~~GMV~~iEP~i~~~~~ 249 (291)
T PRK12318 201 SVVDQFVGHGVGIKFHENPYVPHHRNSSKIPLAPGMIFTIEPMINVGKK 249 (291)
T ss_pred ccCCCcccCCcCccccCCCcccCcCCCCCCEeCCCCEEEECCEEEcCCC
Confidence 9777889999999999999997643 3457899999 999999998754
No 7
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=100.00 E-value=6.3e-45 Score=337.98 Aligned_cols=203 Identities=46% Similarity=0.785 Sum_probs=192.8
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCcccccCCCC
Q 018857 141 EIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDS 220 (349)
Q Consensus 141 ~vKs~~EIe~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~H~~p~~ 220 (349)
+|||++||+.||+|++|++++++++.+.++||+||.||++.+++.+.++|+.+...++..||.++++|.|..++|+.|++
T Consensus 2 ~iKs~~Ei~~~r~A~~i~~~~~~~~~~~i~~G~tE~el~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~n~~~~H~~~~~ 81 (247)
T TIGR00500 2 SLKSPDEIEKIRKAGRLAAEVLEELEREVKPGVSTKELDRIAKDFIEKHGAKPAFLGYYGFPGSVCISVNEVVIHGIPDK 81 (247)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHCCCCccccCCCCCCceeEeccccEEEecCCCC
Confidence 69999999999999999999999999999999999999999999999999988767778899999999999999999999
Q ss_pred CCCCCCCEEEEEeeceeCcEEeceeceEeeCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHcCCCcc
Q 018857 221 RKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300 (349)
Q Consensus 221 r~L~~GDiv~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~~~~ 300 (349)
++|++||+|++|+++.|+||++|++|||++|++++++++++++++++++++++.+|||++++||++++++++++.|+...
T Consensus 82 ~~l~~Gd~v~iD~g~~~~gY~aD~~RT~~vG~~~~~~~~~~~~~~~a~~~~~~~~kpG~~~~~v~~~~~~~~~~~g~~~~ 161 (247)
T TIGR00500 82 KVLKDGDIVNIDVGVIYDGYHGDTAKTFLVGKISPEAEKLLECTEESLYKAIEEAKPGNRIGEIGAAIQKYAEAKGFSVV 161 (247)
T ss_pred cccCCCCEEEEEEEEEECCEEEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cCcccccCCCcCccCCCcCCC--CCCCCcccCce-EEEecceEEcC
Q 018857 301 KSYCGHGIGELFHCAPNIPHY--SSLYHAFQPHI-FYIQKSFYFMD 343 (349)
Q Consensus 301 ~~~~GHgIG~~~he~P~i~~~--~~~~~~Le~GM-ftIEPgly~~~ 343 (349)
.+++|||||+.+||.|.++.+ .+++.+|++|| |+|||++|++.
T Consensus 162 ~~~~GHgiG~~~~e~p~i~~~~~~~~~~~l~~gmv~~iEp~i~~~~ 207 (247)
T TIGR00500 162 REYCGHGIGRKFHEEPQIPNYGKKFTNVRLKEGMVFTIEPMVNTGT 207 (247)
T ss_pred cCccCCccCcccCCCCccCCcCcCCCCCEecCCCEEEEeeEEEcCC
Confidence 788999999999999988754 34678999999 99999999853
No 8
>PRK05716 methionine aminopeptidase; Validated
Probab=100.00 E-value=2e-43 Score=328.64 Aligned_cols=204 Identities=48% Similarity=0.813 Sum_probs=192.5
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCcccccCC
Q 018857 139 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIP 218 (349)
Q Consensus 139 ~r~vKs~~EIe~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~H~~p 218 (349)
+..|||++||+.||+|++|++++++++.+.++||+||.||++.+...+.++|+.+.+.++..|+.++++|.|+..+|+.|
T Consensus 2 ~~~iKs~~Ei~~~r~A~~i~~~~~~~a~~~i~pG~se~ela~~~~~~~~~~G~~~~~~~~~~~~~~~~~g~~~~~~h~~~ 81 (252)
T PRK05716 2 AITIKTPEEIEKMRVAGRLAAEVLDEIEPHVKPGVTTKELDRIAEEYIRDQGAIPAPLGYHGFPKSICTSVNEVVCHGIP 81 (252)
T ss_pred ceeeCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHCCCEecccCCCCCCcCeEecccceeecCCC
Confidence 35799999999999999999999999999999999999999999999999998876666778888899999999999999
Q ss_pred CCCCCCCCCEEEEEeeceeCcEEeceeceEeeCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHcCCC
Q 018857 219 DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFS 298 (349)
Q Consensus 219 ~~r~L~~GDiv~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~~ 298 (349)
++++|++||+|.+|+++.++||++|++|||++|++++++++++++++++++++++++|||++++||++++++++++.|+.
T Consensus 82 ~~~~l~~Gd~v~id~g~~~~gY~~d~~RT~~vG~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~dv~~~~~~~~~~~g~~ 161 (252)
T PRK05716 82 SDKVLKEGDIVNIDVTVIKDGYHGDTSRTFGVGEISPEDKRLCEVTKEALYLGIAAVKPGARLGDIGHAIQKYAEAEGFS 161 (252)
T ss_pred CCcccCCCCEEEEEEEEEECCEEEEeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccCcccccCCCcCccCCCcCCC--CCCCCcccCce-EEEecceEEc
Q 018857 299 VVKSYCGHGIGELFHCAPNIPHY--SSLYHAFQPHI-FYIQKSFYFM 342 (349)
Q Consensus 299 ~~~~~~GHgIG~~~he~P~i~~~--~~~~~~Le~GM-ftIEPgly~~ 342 (349)
..++++|||||+.+||.|.+..+ .+++.+|+||| |+|||++|++
T Consensus 162 ~~~~~~GHgiG~~~~e~p~~~~~~~~~~~~~le~Gmv~~vEp~i~~~ 208 (252)
T PRK05716 162 VVREYCGHGIGRKFHEEPQIPHYGAPGDGPVLKEGMVFTIEPMINAG 208 (252)
T ss_pred eecCccccccCCccCCCCccCcCCCCCCCCEecCCCEEEEccEEEcC
Confidence 87788999999999999988754 45678999999 9999999974
No 9
>PRK09795 aminopeptidase; Provisional
Probab=100.00 E-value=1e-43 Score=347.29 Aligned_cols=203 Identities=23% Similarity=0.407 Sum_probs=189.4
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCcccc
Q 018857 136 LQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICH 215 (349)
Q Consensus 136 ~~~~r~vKs~~EIe~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~H 215 (349)
+..+|+|||++||+.||+|++|++++++.+.+.++||+||.||++.++..+.++|+.+. +|++++++|.|...+|
T Consensus 121 ~~~lR~iKs~~Ei~~~r~a~~i~~~~~~~~~~~i~~G~tE~e~~~~~~~~~~~~G~~~~-----~f~~iv~sG~~~~~ph 195 (361)
T PRK09795 121 PDVLRQIKTPEEVEKIRLACGIADRGAEHIRRFIQAGMSEREIAAELEWFMRQQGAEKA-----SFDTIVASGWRGALPH 195 (361)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHCCCCcC-----CCCeEEEEeccccccC
Confidence 46699999999999999999999999999999999999999999999999999998753 4889999999999999
Q ss_pred cCCCCCCCCCCCEEEEEeeceeCcEEeceeceEeeCC--CCHH---HHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 018857 216 GIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGN--ADEA---SRQLVQCTYECLEKAISIVKPGVRFREIGEVINR 290 (349)
Q Consensus 216 ~~p~~r~L~~GDiv~iD~g~~~~GY~~D~~RT~~vG~--~~~~---~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~ 290 (349)
+.|++++|++||+|++|+++.|+||++|++|||++|. ++++ ++++|+++.++++++++++|||++++||++++++
T Consensus 196 ~~~~~~~l~~gd~v~~d~g~~~~gY~sd~tRt~~~g~~~~~~~~~~~~~~~~~v~~a~~~~~~~~rpG~~~~~v~~~~~~ 275 (361)
T PRK09795 196 GKASDKIVAAGEFVTLDFGALYQGYCSDMTRTLLVNGEGVSAESHPLFNVYQIVLQAQLAAISAIRPGVRCQQVDDAARR 275 (361)
T ss_pred CCCCCceecCCCEEEEEeccccCCEeecceEEEEeCCcCCchhHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999963 3333 7899999999999999999999999999999999
Q ss_pred HHHHcCCC-cccCcccccCCCcCccCCCcCCCCCCCCcccCce-EEEecceEEcCCC
Q 018857 291 HATMSGFS-VVKSYCGHGIGELFHCAPNIPHYSSLYHAFQPHI-FYIQKSFYFMDNG 345 (349)
Q Consensus 291 ~~~~~G~~-~~~~~~GHgIG~~~he~P~i~~~~~~~~~Le~GM-ftIEPgly~~~~G 345 (349)
++++.||. ...+++|||||+++||.|.+. ++++.+|++|| |+|||++|+++.|
T Consensus 276 ~~~~~g~~~~~~h~~GHgiGl~~he~p~i~--~~~~~~l~~gmv~~iEpgiy~~~~~ 330 (361)
T PRK09795 276 VITEAGYGDYFGHNTGHAIGIEVHEDPRFS--PRDTTTLQPGMLLTVEPGIYLPGQG 330 (361)
T ss_pred HHHHcCCCccCCCCCCccCCccccCCCCcC--CCCCCCcCCCCEEEECCEEEeCCCC
Confidence 99999997 456789999999999999986 57889999999 9999999999886
No 10
>PRK12896 methionine aminopeptidase; Reviewed
Probab=100.00 E-value=3.2e-43 Score=327.73 Aligned_cols=204 Identities=37% Similarity=0.653 Sum_probs=191.9
Q ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCcccccC
Q 018857 138 HVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGI 217 (349)
Q Consensus 138 ~~r~vKs~~EIe~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~H~~ 217 (349)
++++|||++||+.||+|+++++++++++.+.++||+||.||++.+++.+.++|+.+++..+.+||..+++|.|...+|+.
T Consensus 6 ~~~~vKs~~Ei~~~r~a~~i~~~~~~~~~~~i~pG~te~el~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~n~~~~h~~ 85 (255)
T PRK12896 6 RGMEIKSPRELEKMRKIGRIVATALKEMGKAVEPGMTTKELDRIAEKRLEEHGAIPSPEGYYGFPGSTCISVNEEVAHGI 85 (255)
T ss_pred CceeECCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHCCCEeCcccCCCCCcceEecCCCeeEecC
Confidence 35689999999999999999999999999999999999999999999999999998877778899999999999999999
Q ss_pred CCCCCCCCCCEEEEEeeceeCcEEeceeceEeeCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHcCC
Q 018857 218 PDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGF 297 (349)
Q Consensus 218 p~~r~L~~GDiv~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~ 297 (349)
|++++|++||+|++|+++.++||++|++|||++|+++++++++++++.++++++++++|||++++||++++++++++.|+
T Consensus 86 p~~~~l~~Gd~v~iD~g~~~~gY~aD~~RT~~vG~~~~~~~~~~~~~~~a~~~~~~~~kpG~~~~~v~~~~~~~~~~~G~ 165 (255)
T PRK12896 86 PGPRVIKDGDLVNIDVSAYLDGYHGDTGITFAVGPVSEEAEKLCRVAEEALWAGIKQVKAGRPLNDIGRAIEDFAKKNGY 165 (255)
T ss_pred CCCccCCCCCEEEEEEeEEECcEEEeeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCcccccCCCcCccCCCcC-CC--CCCCCcccCce-EEEecceEE
Q 018857 298 SVVKSYCGHGIGELFHCAPNIP-HY--SSLYHAFQPHI-FYIQKSFYF 341 (349)
Q Consensus 298 ~~~~~~~GHgIG~~~he~P~i~-~~--~~~~~~Le~GM-ftIEPgly~ 341 (349)
....+++|||||+.+||.|.+. ++ ++++.+|++|| |+|||++|+
T Consensus 166 ~~~~~~~GHgiG~~~he~p~~~~~~~~~~~~~~le~GmV~~iEp~i~~ 213 (255)
T PRK12896 166 SVVRDLTGHGVGRSLHEEPSVILTYTDPLPNRLLRPGMTLAVEPFLNL 213 (255)
T ss_pred EeccCcccCCcCcccccCCCccccCCCCCCCCEecCCcEEEEeceEEc
Confidence 8778899999999999999544 22 35678999999 999999984
No 11
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-42 Score=342.44 Aligned_cols=209 Identities=28% Similarity=0.473 Sum_probs=193.7
Q ss_pred CCCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecC
Q 018857 130 VEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSV 209 (349)
Q Consensus 130 ~e~~~~~~~~r~vKs~~EIe~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~ 209 (349)
......+..+|+|||++||+.||+|+++++.++..+++.+++|+||.||.+.++..+.+.|+... .|++++++|.
T Consensus 142 ~~~~~~i~~lR~iKs~~EI~~ir~A~~i~~~a~~~~~~~~~~g~tE~ev~a~l~~~~~~~G~~~~-----sf~~iv~~G~ 216 (384)
T COG0006 142 VDASDLVDRLRLIKSPAEIAKIRKAAEIADAALEAALEAIRPGMTEAEIAAELEYALRKGGAEGP-----SFDTIVASGE 216 (384)
T ss_pred eccHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCcc-----CcCcEEeccc
Confidence 33444567799999999999999999999999999999999999999999999999999997641 3899999999
Q ss_pred CCcccccCCCCCCCCCCCEEEEEeeceeCcEEeceeceEeeCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 018857 210 NEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVIN 289 (349)
Q Consensus 210 n~~~~H~~p~~r~L~~GDiv~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~ 289 (349)
|..++|+.|+++.+++||+|+||+|+.|+||++|+||||++|+++++++++|+.++++++++++++|||++++||+.+++
T Consensus 217 n~a~pH~~~~~~~~~~gd~vliD~G~~~~gY~sDiTRT~~~G~~~~~~~~iy~~V~~aq~aa~~~~rpG~~~~~vd~~ar 296 (384)
T COG0006 217 NAALPHYTPSDRKLRDGDLVLIDLGGVYNGYCSDITRTFPIGKPSDEQREIYEAVLEAQEAAIAAIRPGVTGGEVDAAAR 296 (384)
T ss_pred cccCcCCCCCcccccCCCEEEEEeeeEECCccccceeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCC-cccCcccccCC--CcCccCC-CcCCCCCCCCcccCce-EEEecceEEcCCC
Q 018857 290 RHATMSGFS-VVKSYCGHGIG--ELFHCAP-NIPHYSSLYHAFQPHI-FYIQKSFYFMDNG 345 (349)
Q Consensus 290 ~~~~~~G~~-~~~~~~GHgIG--~~~he~P-~i~~~~~~~~~Le~GM-ftIEPgly~~~~G 345 (349)
+++.+.|+. ...+.+|||+| +++||.| ++. .++..+|+||| |++||++|+++.|
T Consensus 297 ~~i~~~g~~~~~~h~~GHgvG~~l~vhE~p~~~~--~~~~~~L~~GMv~t~Epg~y~~g~~ 355 (384)
T COG0006 297 QVLEKAGYGLYFLHGTGHGVGFVLDVHEHPQYLS--PGSDTTLEPGMVFSIEPGIYIPGGG 355 (384)
T ss_pred HHHHhcCCcccccCCccccCCCCcccCcCccccC--CCCCccccCCcEEEeccccccCCCc
Confidence 999998875 34455999999 9999999 465 57899999999 9999999998875
No 12
>TIGR02993 ectoine_eutD ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown.
Probab=100.00 E-value=1.6e-41 Score=335.04 Aligned_cols=206 Identities=19% Similarity=0.257 Sum_probs=182.5
Q ss_pred CCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHH----cCCCCCCCCCCCCCceeee
Q 018857 132 PNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATIT----AGGYPSPLNYHFFPKSCCT 207 (349)
Q Consensus 132 ~~~~~~~~r~vKs~~EIe~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~----~g~~ps~l~~~~fp~~v~~ 207 (349)
....+..+|+|||++||+.||+|++|++++++++.+.++||+||.||++.+...... .|+. +..|.+++.+
T Consensus 148 ~~~~~~~lR~iKs~~EI~~lr~A~~i~~~~~~~~~~~i~pG~tE~ei~~~~~~~~~~~~~~~g~~-----~~~~~~iv~s 222 (391)
T TIGR02993 148 ATALVNWQRAVKSETEISYMRVAARIVEKMHQRIFERIEPGMRKCDLVADIYDAGIRGVDGFGGD-----YPAIVPLLPS 222 (391)
T ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhhhcccCcCCC-----cCCccccccc
Confidence 334467799999999999999999999999999999999999999999888655432 1221 1135567789
Q ss_pred cCCCcccccCCCCCCCCCCCEEEEEeeceeCcEEeceeceEeeCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHH
Q 018857 208 SVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEV 287 (349)
Q Consensus 208 g~n~~~~H~~p~~r~L~~GDiv~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~a 287 (349)
|.|...+|+.|++++|++||+|+||+++.|+||++|++|||++|+++++++++|+.++++++++++++|||++++||+++
T Consensus 223 G~~~a~pH~~~~~~~l~~gd~v~iD~g~~~~GY~sD~tRT~~vG~p~~~~~~~~~~~~~a~~~~i~~ikpG~~~~dv~~~ 302 (391)
T TIGR02993 223 GADASAPHLTWDDSPMKVGEGTFFEIAGCYKRYHCPLSRTVFLGKPTQAFLDAEKAVLEGMEAGLEAAKPGNTCEDIANA 302 (391)
T ss_pred CccccCCCCCCCCCcccCCCEEEEEeeeecccCccceeEEEEcCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcccCcccccCCCcCcc-----CCCcCCCCCCCCcccCce-EEEecceEEcCCC
Q 018857 288 INRHATMSGFSVVKSYCGHGIGELFHC-----APNIPHYSSLYHAFQPHI-FYIQKSFYFMDNG 345 (349)
Q Consensus 288 i~~~~~~~G~~~~~~~~GHgIG~~~he-----~P~i~~~~~~~~~Le~GM-ftIEPgly~~~~G 345 (349)
++++++++|+.. .+++|||||+.+|+ .|.+. ++++.+|++|| |+|||++|+++.|
T Consensus 303 ~~~~~~~~G~~~-~h~~GhgiGl~~~~~~~e~~~~l~--~~~~~~L~~GMv~tvEpgiy~~~~G 363 (391)
T TIGR02993 303 FFAVLKKYGIHK-DSRTGYPIGLSYPPDWGERTMSLR--PGDNTVLKPGMTFHFMTGLWMEDWG 363 (391)
T ss_pred HHHHHHHcCCcc-CCCceeeeccCcCCCCCCcccccc--CCCCceecCCCEEEEcceeEeCCCC
Confidence 999999999976 36799999999874 34554 57889999999 9999999998776
No 13
>PRK15173 peptidase; Provisional
Probab=100.00 E-value=4.1e-41 Score=324.13 Aligned_cols=205 Identities=23% Similarity=0.371 Sum_probs=184.2
Q ss_pred CCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCc
Q 018857 133 NSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEV 212 (349)
Q Consensus 133 ~~~~~~~r~vKs~~EIe~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~ 212 (349)
...+..+|+|||++||+.||+|+++++++++++.+.++||+||.||++.++.++.+.|.... ..| .++.+|.+ .
T Consensus 86 ~~~i~~lR~iKs~~EI~~mr~A~~i~~~~~~~~~~~i~~G~tE~el~a~~~~~~~~~g~~~~----~~~-~~i~~G~~-~ 159 (323)
T PRK15173 86 SSIFNELRVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVMSKSETHF----SRF-HLISVGAD-F 159 (323)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHcCCCCC----CCC-cEEEECCC-C
Confidence 33466799999999999999999999999999999999999999999999888887765321 113 35667766 4
Q ss_pred ccccCCCCCCCCCCCEEEEEeeceeCcEEeceeceEeeCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 018857 213 ICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHA 292 (349)
Q Consensus 213 ~~H~~p~~r~L~~GDiv~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~ 292 (349)
.+|+.|++++|++||+|++|+++.|+||++|++|||++|+++++++++|++++++++++++++|||++++||++++++++
T Consensus 160 ~~h~~~~~~~l~~Gd~V~iD~g~~~~GY~aDitRT~~vG~p~~~~~~~y~~v~ea~~~~~~~irPG~~~~dv~~a~~~~~ 239 (323)
T PRK15173 160 SPKLIPSNTKACSGDLIKFDCGVDVDGYGADIARTFVVGEPPEITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVI 239 (323)
T ss_pred ccCCCCCCCccCCCCEEEEEeCccCCCEeeeeEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCC-cccCcccccCCC--cCccCCCcCCCCCCCCcccCce-EEEecceEEcCCC
Q 018857 293 TMSGFS-VVKSYCGHGIGE--LFHCAPNIPHYSSLYHAFQPHI-FYIQKSFYFMDNG 345 (349)
Q Consensus 293 ~~~G~~-~~~~~~GHgIG~--~~he~P~i~~~~~~~~~Le~GM-ftIEPgly~~~~G 345 (349)
++.|+. ..++++|||||+ .+||.|.+.. +++.+|++|| |+|||++|+++.|
T Consensus 240 ~~~G~~~~~~~~~GHGiG~~lg~~E~P~i~~--~~~~~Le~GMV~tiEPgiy~~g~g 294 (323)
T PRK15173 240 KKSGLPNYNRGHLGHGNGVFLGLEESPFVST--HATESFTSGMVLSLETPYYGYNLG 294 (323)
T ss_pred HHcCCccccCCCCCCcCCCCCCcCCCCCCCC--CCCCccCCCCEEEECCEEEcCCCc
Confidence 999996 566789999996 8899999873 6778999999 9999999988765
No 14
>PRK10879 proline aminopeptidase P II; Provisional
Probab=100.00 E-value=1.2e-40 Score=332.90 Aligned_cols=201 Identities=21% Similarity=0.335 Sum_probs=182.7
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCcccc
Q 018857 136 LQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICH 215 (349)
Q Consensus 136 ~~~~r~vKs~~EIe~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~H 215 (349)
+..+|+|||++||+.||+|++++.++++++++.++||+||.||++.+...+.++|+... .|++++++|.|..++|
T Consensus 167 l~~lR~iKs~~EI~~~r~A~~i~~~a~~~~~~~~~pG~tE~ei~a~~~~~~~~~G~~~~-----~~~~iv~~G~na~~~H 241 (438)
T PRK10879 167 VHEMRLFKSPEEIAVLRRAGEISALAHTRAMEKCRPGMFEYQLEGEIHHEFNRHGARYP-----SYNTIVGSGENGCILH 241 (438)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHCCCCCC-----CCCcEEEEcCcccccc
Confidence 45689999999999999999999999999999999999999999999999999987532 3888999999999999
Q ss_pred cCCCCCCCCCCCEEEEEeeceeCcEEeceeceEee-CCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHH-
Q 018857 216 GIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHAT- 293 (349)
Q Consensus 216 ~~p~~r~L~~GDiv~iD~g~~~~GY~~D~~RT~~v-G~~~~~~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~- 293 (349)
+.|++++|++||+|+||+|+.++||++|++|||++ |+++++++++|++++++++++++++|||+++++|++++.+++.
T Consensus 242 ~~~~~~~l~~GDlVliD~G~~~~GY~sDitRT~~v~G~~s~~q~~~y~~vl~a~~aai~~~kpG~~~~~v~~~~~~~~~~ 321 (438)
T PRK10879 242 YTENESEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTPAQREIYDIVLESLETSLRLYRPGTSIREVTGEVVRIMVS 321 (438)
T ss_pred CCCCccccCCCCEEEEEeCeEECCEEEEeEEEEEECCcCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 8999999999999999999999999999999999999886654
Q ss_pred -----------------HcCCC-cccCcccccCCCcCccCCCcCCCCCCCCcccCce-EEEecceEEcC
Q 018857 294 -----------------MSGFS-VVKSYCGHGIGELFHCAPNIPHYSSLYHAFQPHI-FYIQKSFYFMD 343 (349)
Q Consensus 294 -----------------~~G~~-~~~~~~GHgIG~~~he~P~i~~~~~~~~~Le~GM-ftIEPgly~~~ 343 (349)
+.++. +..|.+||+||+++|+.|.+. .+++.+|+||| |+|||++|+++
T Consensus 322 ~l~~~Gl~~~~~~~~~~~~~~~~~~~Hg~GH~iGldvHd~~~~~--~~~~~~L~~GmV~tvEPgiY~~~ 388 (438)
T PRK10879 322 GLVKLGILKGDVDQLIAENAHRPFFMHGLSHWLGLDVHDVGVYG--QDRSRILEPGMVLTVEPGLYIAP 388 (438)
T ss_pred HHHHhCCcCCCHHHHHHhccCccccCCCCccccCcCcCcCCCcC--CCCCCcCCCCCEEEECCEEEECC
Confidence 23332 445779999999999998764 35678999999 99999999975
No 15
>PRK14575 putative peptidase; Provisional
Probab=100.00 E-value=1.9e-40 Score=328.83 Aligned_cols=205 Identities=23% Similarity=0.372 Sum_probs=185.5
Q ss_pred CCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCc
Q 018857 133 NSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEV 212 (349)
Q Consensus 133 ~~~~~~~r~vKs~~EIe~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~ 212 (349)
...+..+|+|||++||+.||+|+++++++++++.+.++||+||.||++.+++++.+.|....+ .| .++.+|.+ .
T Consensus 169 ~~~l~~lR~iKs~~EI~~~r~A~~i~~~a~~~~~~~i~pG~tE~elaa~~~~~~~~~g~~~~~----~~-~~v~~G~~-~ 242 (406)
T PRK14575 169 SSIFNELRVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVMSKSETHFS----RF-HLISVGAD-F 242 (406)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCcCC----cC-ceEEECCC-c
Confidence 344667999999999999999999999999999999999999999999999988887764311 12 35677776 5
Q ss_pred ccccCCCCCCCCCCCEEEEEeeceeCcEEeceeceEeeCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 018857 213 ICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHA 292 (349)
Q Consensus 213 ~~H~~p~~r~L~~GDiv~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~ 292 (349)
.+|+.|++++|++||+|++|+++.|+||++|++|||++|+++++++++|+++.++++++++++|||++++||++++++++
T Consensus 243 ~~h~~~~~~~l~~Gd~v~iD~g~~~~GY~sditRT~~vG~~~~~~~~~~~~~~~a~~~~~~~~rpG~~~~dv~~a~~~~~ 322 (406)
T PRK14575 243 SPKLIPSNTKACSGDLIKFDCGVDVDGYGADIARTFVVGEPPEITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVI 322 (406)
T ss_pred ccCCCCCCCcCCCCCEEEEEeceEECCEeeeeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCC-cccCcccccCCC--cCccCCCcCCCCCCCCcccCce-EEEecceEEcCCC
Q 018857 293 TMSGFS-VVKSYCGHGIGE--LFHCAPNIPHYSSLYHAFQPHI-FYIQKSFYFMDNG 345 (349)
Q Consensus 293 ~~~G~~-~~~~~~GHgIG~--~~he~P~i~~~~~~~~~Le~GM-ftIEPgly~~~~G 345 (349)
++.||. ..++++|||||+ .+||.|++.. +++.+|++|| |+|||++|+++.|
T Consensus 323 ~~~G~~~~~~~~~GHGiG~~lg~~e~P~i~~--~~~~~Le~GMv~tiEpgiy~~g~g 377 (406)
T PRK14575 323 KKSGLPNYNRGHLGHGNGVFLGLEESPFVST--HATESFTSGMVLSLETPYYGYNLG 377 (406)
T ss_pred HHcCCccccCCCCCCcccCCCCCccCCCCCC--CCCCCcCCCCEEEECCeeecCCCc
Confidence 999997 456789999995 8999999873 6788999999 9999999998765
No 16
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=100.00 E-value=3.2e-40 Score=303.38 Aligned_cols=195 Identities=19% Similarity=0.236 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCC-CCCCCCCceeeecCCCcccccCCCCCCCCCC
Q 018857 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNYHFFPKSCCTSVNEVICHGIPDSRKLEDG 226 (349)
Q Consensus 148 Ie~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~-l~~~~fp~~v~~g~n~~~~H~~p~~r~L~~G 226 (349)
|+.||+|++|++++++++.+.++||+||.||++.+++++.+.|+...+ ..+..+.+++.+|.|+..+|+.|++++|++|
T Consensus 1 I~~ir~Aa~i~d~~~~~~~~~i~pG~tE~ei~a~~~~~~~~~ga~~~~~~~~~~~~~~v~~G~~~~~~H~~~~~r~l~~G 80 (228)
T cd01090 1 IALIRHGARIADIGGAAVVEAIREGVPEYEVALAGTQAMVREIAKTFPEVELMDTWTWFQSGINTDGAHNPVTNRKVQRG 80 (228)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccCCcccccCcceEEEeeccccccCCCCCCcccCCC
Confidence 689999999999999999999999999999999999999999875322 2223334578999999999999999999999
Q ss_pred CEEEEEeeceeCcEEeceeceEeeCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHcCCCc-ccCccc
Q 018857 227 DIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSV-VKSYCG 305 (349)
Q Consensus 227 Div~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~~~-~~~~~G 305 (349)
|+|++|+++.++||++|++|||++|+++++++++++++.++++++++++|||++++||+++++++++++||.. ..+.+|
T Consensus 81 D~v~~d~g~~~~GY~ad~~RT~~vG~~~~~~~~~~~~~~ea~~~~~~~~rpG~~~~~v~~a~~~~~~~~G~~~~~~~~~G 160 (228)
T cd01090 81 DILSLNCFPMIAGYYTALERTLFLDEVSDAHLKIWEANVAVHERGLELIKPGARCKDIAAELNEMYREHDLLRYRTFGYG 160 (228)
T ss_pred CEEEEEEeEEECCEeeeeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCcccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999974 455689
Q ss_pred ccCCCcCccCCCc---CCCCCCCCcccCce-EEEecceEEc
Q 018857 306 HGIGELFHCAPNI---PHYSSLYHAFQPHI-FYIQKSFYFM 342 (349)
Q Consensus 306 HgIG~~~he~P~i---~~~~~~~~~Le~GM-ftIEPgly~~ 342 (349)
||||+.+||.|.- ....+++.+|+||| |+|||++|++
T Consensus 161 HgiGl~~he~~~~~g~~~~~~~~~~Le~GMV~~iEP~i~~~ 201 (228)
T cd01090 161 HSFGVLSHYYGREAGLELREDIDTVLEPGMVVSMEPMIMLP 201 (228)
T ss_pred cccccccccCCCccccccCCCCCCccCCCCEEEECCEEeec
Confidence 9999999998731 11245678999999 9999999996
No 17
>cd01087 Prolidase Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Probab=100.00 E-value=2.2e-40 Score=306.77 Aligned_cols=190 Identities=26% Similarity=0.396 Sum_probs=175.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCcccccCCCCCCCCCCC
Q 018857 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGD 227 (349)
Q Consensus 148 Ie~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~H~~p~~r~L~~GD 227 (349)
|+.||+|+++++++++++.+.++||+||.||++.+++.+.+.|+.++ |+.++++|.|...+|+.|++++|++||
T Consensus 1 i~~lr~A~~i~~~~~~~~~~~i~pG~tE~ei~~~~~~~~~~~G~~~~------~~~~v~~g~~~~~~H~~~~~~~l~~Gd 74 (243)
T cd01087 1 IELMRKACDISAEAHRAAMKASRPGMSEYELEAEFEYEFRSRGARLA------YSYIVAAGSNAAILHYVHNDQPLKDGD 74 (243)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHHcCCCcC------CCCeEEECCCccccCCCcCCCcCCCCC
Confidence 68999999999999999999999999999999999999999998833 788999999999999999999999999
Q ss_pred EEEEEeeceeCcEEeceeceEee-CCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHcCC---------
Q 018857 228 IVNIDVTVYYKGVHGDLNETYFV-GNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGF--------- 297 (349)
Q Consensus 228 iv~iD~g~~~~GY~~D~~RT~~v-G~~~~~~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~--------- 297 (349)
+|++|+++.|+||++|++|||++ |+++++++++++++.++++++++++|||++++||++++++++++.|+
T Consensus 75 ~v~vD~g~~~~GY~ad~~Rt~~vgg~~~~~~~~~~~~~~~a~~~~i~~~rpG~~~~~v~~a~~~~~~~~~~~~g~~~~~~ 154 (243)
T cd01087 75 LVLIDAGAEYGGYASDITRTFPVNGKFTDEQRELYEAVLAAQKAAIAACKPGVSYEDIHLLAHRVLAEGLKELGILKGDV 154 (243)
T ss_pred EEEEEeCceECCEeeeeeEEEEeCCcCCHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcCcccCch
Confidence 99999999999999999999999 69999999999999999999999999999999999999999987642
Q ss_pred ----------CcccCcccccCCCcCccCCCcCCCCCCCCcccCce-EEEecceEEcC
Q 018857 298 ----------SVVKSYCGHGIGELFHCAPNIPHYSSLYHAFQPHI-FYIQKSFYFMD 343 (349)
Q Consensus 298 ----------~~~~~~~GHgIG~~~he~P~i~~~~~~~~~Le~GM-ftIEPgly~~~ 343 (349)
.+..+.+|||||+.+||.|.+....+++.+|++|| |+|||++|+++
T Consensus 155 ~~~~~~~~~~~~~~h~~GhgiGl~~~e~p~~~~~~~~~~~l~~GMv~~iEp~iy~~~ 211 (243)
T cd01087 155 DEIVESGAYAKFFPHGLGHYLGLDVHDVGGYLRYLRRARPLEPGMVITIEPGIYFIP 211 (243)
T ss_pred HhhhhhhhhhhhcCCCCccccCcccccCccccccCCCCCCCCCCCEEEECCEEEeCC
Confidence 34556799999999999998732356788999999 99999999997
No 18
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=100.00 E-value=6.9e-40 Score=302.31 Aligned_cols=194 Identities=51% Similarity=0.852 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCcccccCCCCCCCCCCC
Q 018857 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGD 227 (349)
Q Consensus 148 Ie~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~H~~p~~r~L~~GD 227 (349)
|+.||+|+++++++++++.+.++||+||.||++.+.+.+.++|+.+..+++..||..+++|.|+..+|+.|++++|++||
T Consensus 1 I~~lr~A~~i~~~~~~~~~~~~~pG~tE~ev~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~l~~Gd 80 (238)
T cd01086 1 IEGMREAGRIVAEVLDELAKAIKPGVTTKELDQIAHEFIEEHGAYPAPLGYYGFPKSICTSVNEVVCHGIPDDRVLKDGD 80 (238)
T ss_pred CHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCcceecCCCCceeCCCCCCcccCCCC
Confidence 68999999999999999999999999999999999999999999887777888988899999999999999999999999
Q ss_pred EEEEEeeceeCcEEeceeceEeeCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHcCCCcccCccccc
Q 018857 228 IVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHG 307 (349)
Q Consensus 228 iv~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~~~~~~~~GHg 307 (349)
+|.+|+++.++||++|++|||++|+++++++++++.+.++++++++++|||++++||++++++++++.|+....+++|||
T Consensus 81 ~v~id~g~~~~GY~ad~~RT~~~G~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~v~~~~~~~~~~~G~~~~~~~~GHg 160 (238)
T cd01086 81 IVNIDVGVELDGYHGDSARTFIVGEVSEEAKKLVEVTEEALYKGIEAVKPGNRIGDIGHAIEKYAEKNGYSVVREFGGHG 160 (238)
T ss_pred EEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcceecCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998777889999
Q ss_pred CCCcCccCCCcCCC--CCCCCcccCce-EEEecceEE
Q 018857 308 IGELFHCAPNIPHY--SSLYHAFQPHI-FYIQKSFYF 341 (349)
Q Consensus 308 IG~~~he~P~i~~~--~~~~~~Le~GM-ftIEPgly~ 341 (349)
||+.+||.|.+..+ ..++.+|++|| |+|||++|+
T Consensus 161 iG~~~~e~p~~~~~~~~~~~~~le~Gmv~~iep~i~~ 197 (238)
T cd01086 161 IGRKFHEEPQIPNYGRPGTGPKLKPGMVFTIEPMINL 197 (238)
T ss_pred CCCccccCCCcCCccCCCCCCEecCCCEEEEeeEEEC
Confidence 99999999987622 45678999999 999999997
No 19
>PRK14576 putative endopeptidase; Provisional
Probab=100.00 E-value=7.3e-40 Score=324.53 Aligned_cols=204 Identities=22% Similarity=0.326 Sum_probs=185.4
Q ss_pred CCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCcc
Q 018857 134 SDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVI 213 (349)
Q Consensus 134 ~~~~~~r~vKs~~EIe~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~ 213 (349)
..+..+|+|||++||+.||+|++++++++.++.+.++||+||.||++.++..+.+.|.... .+..++++|.| ..
T Consensus 169 ~~l~~lR~iKs~~EI~~~r~A~~i~~~~~~~~~~~i~pG~tE~elaa~~~~~~~~~g~~~~-----~~~~~v~~G~~-~~ 242 (405)
T PRK14576 169 ALFNEIRMIKSPWEIEHLRKSAEITEYGIASAAKKIRVGCTAAELTAAFKAAVMSFPETNF-----SRFNLISVGDN-FS 242 (405)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCcC-----CCCCEEEECCc-cc
Confidence 3466799999999999999999999999999999999999999999999999998875311 12257888888 56
Q ss_pred cccCCCCCCCCCCCEEEEEeeceeCcEEeceeceEeeCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHH
Q 018857 214 CHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHAT 293 (349)
Q Consensus 214 ~H~~p~~r~L~~GDiv~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~ 293 (349)
+|+.|++++|++||+|++|+++.++||++|++|||++|+++++++++++++.++++++++++|||++++||+++++++++
T Consensus 243 ~h~~~~~~~l~~Gd~v~~d~g~~~~GY~sd~tRT~~~G~p~~~~~~~~~~~~~a~~a~~~~~rPG~~~~dv~~a~~~~~~ 322 (405)
T PRK14576 243 PKIIADTTPAKVGDLIKFDCGIDVAGYGADLARTFVLGEPDKLTQQIYDTIRTGHEHMLSMVAPGVKLKAVFDSTMAVIK 322 (405)
T ss_pred CCCCCCCcccCCCCEEEEEeceeECCEEeeeeEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCC-cccCcccccCC--CcCccCCCcCCCCCCCCcccCce-EEEecceEEcCCC
Q 018857 294 MSGFS-VVKSYCGHGIG--ELFHCAPNIPHYSSLYHAFQPHI-FYIQKSFYFMDNG 345 (349)
Q Consensus 294 ~~G~~-~~~~~~GHgIG--~~~he~P~i~~~~~~~~~Le~GM-ftIEPgly~~~~G 345 (349)
++||. ...+++||||| +.+||.|.+. .+++.+|++|| |+|||++|.++.|
T Consensus 323 ~~G~~~~~~~~~GHgiG~~l~~~e~P~i~--~~~~~~Le~GMv~~vEp~~y~~g~g 376 (405)
T PRK14576 323 TSGLPHYNRGHLGHGDGVFLGLEEVPFVS--TQATETFCPGMVLSLETPYYGIGVG 376 (405)
T ss_pred HcCCccccCCCCCCCCCCCCCcCcCCCcC--CCCCCccCCCCEEEECCceeecCCC
Confidence 99996 45578999999 7899999875 46788999999 9999999988754
No 20
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline.
Probab=100.00 E-value=1e-38 Score=287.77 Aligned_cols=191 Identities=28% Similarity=0.477 Sum_probs=179.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCcccccCCCCCCCCCCC
Q 018857 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGD 227 (349)
Q Consensus 148 Ie~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~H~~p~~r~L~~GD 227 (349)
|+.||+|+++++.+++++.+.++||+||.||++.++..+.++|+++ .+|++++++|.|...+|+.|++++|++||
T Consensus 1 i~~~r~a~~i~~~~~~~~~~~~~~G~te~ei~~~~~~~~~~~g~~~-----~~~~~~v~~g~~~~~~h~~~~~~~l~~gd 75 (208)
T cd01092 1 IELLRKAARIADKAFEELLEFIKPGMTEREVAAELEYFMRKLGAEG-----PSFDTIVASGPNSALPHGVPSDRKIEEGD 75 (208)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHHcCCCC-----CCCCcEEEECccccccCCCCCCcCcCCCC
Confidence 6899999999999999999999999999999999999999999864 25899999999999999999999999999
Q ss_pred EEEEEeeceeCcEEeceeceEeeCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHcCCC-cccCcccc
Q 018857 228 IVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFS-VVKSYCGH 306 (349)
Q Consensus 228 iv~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~~-~~~~~~GH 306 (349)
+|++|+++.++||++|++|||++|+++++++++++.+.++++++++++|||++++||+++++++++++|+. ...+.+||
T Consensus 76 ~v~id~g~~~~gy~~d~~RT~~~g~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~di~~~~~~~~~~~g~~~~~~~~~Gh 155 (208)
T cd01092 76 LVLIDFGAIYDGYCSDITRTVAVGEPSDELKEIYEIVLEAQQAAIKAVKPGVTAKEVDKAARDVIEEAGYGEYFIHRTGH 155 (208)
T ss_pred EEEEEeeeeECCEeccceeEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCccccCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999985 34566999
Q ss_pred cCCCcCccCCCcCCCCCCCCcccCce-EEEecceEEcCCC
Q 018857 307 GIGELFHCAPNIPHYSSLYHAFQPHI-FYIQKSFYFMDNG 345 (349)
Q Consensus 307 gIG~~~he~P~i~~~~~~~~~Le~GM-ftIEPgly~~~~G 345 (349)
|||+.+||.|.+. .+++.+|++|| |+|||++|+++.+
T Consensus 156 ~iG~~~~e~p~i~--~~~~~~l~~gmv~~iep~~~~~~~~ 193 (208)
T cd01092 156 GVGLEVHEAPYIS--PGSDDVLEEGMVFTIEPGIYIPGKG 193 (208)
T ss_pred ccCcccCcCCCcC--CCCCCCcCCCCEEEECCeEEecCCC
Confidence 9999999999875 57889999999 9999999998765
No 21
>PRK13607 proline dipeptidase; Provisional
Probab=100.00 E-value=1.2e-38 Score=318.33 Aligned_cols=201 Identities=20% Similarity=0.233 Sum_probs=172.4
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCcccc
Q 018857 136 LQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICH 215 (349)
Q Consensus 136 ~~~~r~vKs~~EIe~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~H 215 (349)
+..+|+|||++||+.||+|++++.++++++++.++||+||.||++.+.... ..++. ...|++++++|.|..++|
T Consensus 155 l~~lR~iKs~~EI~~mr~A~~i~~~a~~~~~~~i~pG~tE~ei~~~~~~~~-~~~~~-----~~~y~~iva~G~naa~~H 228 (443)
T PRK13607 155 LHYHRAYKTDYELACMREAQKIAVAGHRAAKEAFRAGMSEFDINLAYLTAT-GQRDN-----DVPYGNIVALNEHAAVLH 228 (443)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHh-CCCCc-----CCCCCcEEEecCcceEec
Confidence 456899999999999999999999999999999999999999998655432 22221 135889999999999999
Q ss_pred cCCCCC-CCCCCCEEEEEeeceeCcEEeceeceEeeCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH--
Q 018857 216 GIPDSR-KLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHA-- 292 (349)
Q Consensus 216 ~~p~~r-~L~~GDiv~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~-- 292 (349)
+.++++ ++++||+|+||+|+.++||++|++|||+ |+++++++++|+++.++++++++++|||++++||++++.+++
T Consensus 229 ~~~~~~~~~~~Gd~vliD~Ga~~~GY~sDiTRTf~-g~~~~~~~~ly~~v~~aq~aai~~ikPG~~~~dv~~aa~~~i~~ 307 (443)
T PRK13607 229 YTKLDHQAPAEMRSFLIDAGAEYNGYAADITRTYA-AKEDNDFAALIKDVNKEQLALIATMKPGVSYVDLHIQMHQRIAK 307 (443)
T ss_pred CCccCCCCCCCCCEEEEEeeEEECCEEecceEEEe-cCCCHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 999875 6899999999999999999999999999 888999999999999999999999999999999999987666
Q ss_pred --HHcCCC----------------cccCcccccCCCcCccCCCcC--------------CCCCCCCcccCce-EEEecce
Q 018857 293 --TMSGFS----------------VVKSYCGHGIGELFHCAPNIP--------------HYSSLYHAFQPHI-FYIQKSF 339 (349)
Q Consensus 293 --~~~G~~----------------~~~~~~GHgIG~~~he~P~i~--------------~~~~~~~~Le~GM-ftIEPgl 339 (349)
.+.|+. +..|.+||+||+++||.+.+. .+-.+..+|+||| ||||||+
T Consensus 308 ~L~~~Gl~~g~~~~~~~~~g~~~~~f~HglGH~iGldvHd~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~GmV~TvEPGi 387 (443)
T PRK13607 308 LLRKFQIVTGLSEEAMVEQGITSPFFPHGLGHPLGLQVHDVAGFMQDDRGTHLAAPEKHPYLRCTRVLEPGMVLTIEPGL 387 (443)
T ss_pred HHHHcCCCCCCCHHHHHhCCCceEecCCCccCccCcccccCCCcccccccccccccccccccccCCcCCCCcEEEECCee
Confidence 444443 346779999999999985432 1123567999999 9999999
Q ss_pred EEcC
Q 018857 340 YFMD 343 (349)
Q Consensus 340 y~~~ 343 (349)
|+++
T Consensus 388 Y~~~ 391 (443)
T PRK13607 388 YFID 391 (443)
T ss_pred eeCh
Confidence 9975
No 22
>cd01085 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.
Probab=100.00 E-value=2.4e-37 Score=283.52 Aligned_cols=191 Identities=16% Similarity=0.157 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCC--CcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCcccccCCC---CCCC
Q 018857 149 ERMRETCRIAREVLDAAARMIRPG--VTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPD---SRKL 223 (349)
Q Consensus 149 e~~R~A~~ia~~~l~~~~~~i~pG--vte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~H~~p~---~r~L 223 (349)
+.||.+..+ .++++.+.+.++|| +||.||++.+++++.+.+.++. ..||+++++|.|+.++|++|+ +++|
T Consensus 5 ~~~~~~~~~-~~~~~~~~~~i~~G~~~tE~eiaa~~~~~~~~~g~~~~----~~f~~~v~~g~n~~~~H~~p~~~~~r~l 79 (224)
T cd01085 5 AHIRDGVAL-VEFLAWLEQEVPKGETITELSAADKLEEFRRQQKGYVG----LSFDTISGFGPNGAIVHYSPTEESNRKI 79 (224)
T ss_pred HHHHHHHHH-HHHHHHHHHHhccCCCEeHHHHHHHHHHHHHHcCCCcC----CCcceEEEecCccCcCCCCcCcccCccc
Confidence 456666666 49999999999999 9999999999987777765532 258999999999999999999 9999
Q ss_pred CCCCEEEEEeeceeCcEEeceeceEeeCCCCHHHHHHHHHHHHHHHHHHHHcC-CCCcHhHHHHHHHHHHHHcCCCcccC
Q 018857 224 EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVK-PGVRFREIGEVINRHATMSGFSVVKS 302 (349)
Q Consensus 224 ~~GDiv~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~ai~~~k-PG~~~~eI~~ai~~~~~~~G~~~~~~ 302 (349)
++||+|++|+++.++||++|++|||++|+++++++++++.+++++.++++.++ ||++.++|++++++.+.+.|+.+. +
T Consensus 80 ~~GD~V~iD~g~~~~gY~aD~~RT~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~g~~~~-h 158 (224)
T cd01085 80 SPDGLYLIDSGGQYLDGTTDITRTVHLGEPTAEQKRDYTLVLKGHIALARAKFPKGTTGSQLDALARQPLWKAGLDYG-H 158 (224)
T ss_pred CCCCEEEEEeCccCCCcccccEEeecCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCC-C
Confidence 99999999999999999999999999999999999999999999999999884 999999999999999999999744 5
Q ss_pred cccccCC--CcCccCCCcCCCCCCCCcccCce-EEEecceEEcCCC
Q 018857 303 YCGHGIG--ELFHCAPNIPHYSSLYHAFQPHI-FYIQKSFYFMDNG 345 (349)
Q Consensus 303 ~~GHgIG--~~~he~P~i~~~~~~~~~Le~GM-ftIEPgly~~~~G 345 (349)
++||||| +.+||.|.+....+++.+|++|| |+|||++|+++.|
T Consensus 159 ~~GHgIG~~l~~hE~P~i~~~~~~~~~L~~GmvftiEP~iy~~g~~ 204 (224)
T cd01085 159 GTGHGVGSFLNVHEGPQSISPAPNNVPLKAGMILSNEPGYYKEGKY 204 (224)
T ss_pred CCCCCCCCCCcCCCCCCcCCcCCCCCCcCCCCEEEECCEeEeCCCe
Confidence 6999999 58899998751245678999999 9999999998765
No 23
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains proteins that belong to MEROPS peptidase family M24 (clan MG), which share a common structural-fold, the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. The entry also contains proteins that have lost catalytic activity, for example Spt16, which is a component of the FACT complex. The crystal structure of the N-terminal domain of Spt16, determined to 2.1A, reveals an aminopeptidase P fold whose enzymatic activity has been lost. This fold binds directly to histones H3-H4 through a interaction with their globular core domains, as well as with their N-terminal tails []. The FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p (P32558 from SWISSPROT, IPR013953 from INTERPRO) and Pob3p (Q04636 from SWISSPROT, IPR000969 from INTERPRO). The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, , ]. ; GO: 0009987 cellular process; PDB: 4A6V_B 4A6W_A 3CTZ_A 3IG4_B 2B3H_A 2NQ6_A 2NQ7_A 2GZ5_A 2G6P_A 2B3L_A ....
Probab=100.00 E-value=1.8e-37 Score=279.90 Aligned_cols=190 Identities=33% Similarity=0.512 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHH-HHHcCCCCCCCCCCCCCceeeecCCCcccccCCCCCCCCCCC
Q 018857 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEA-TITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGD 227 (349)
Q Consensus 149 e~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~-~~~~g~~ps~l~~~~fp~~v~~g~n~~~~H~~p~~r~L~~GD 227 (349)
|.||+|++|++++++++++.++||+||.||.+.+.++ +.++|... .+|+.++++|.|...+|+.|++++|++||
T Consensus 1 e~~R~a~~i~~~~~~~~~~~~~~G~te~ei~~~~~~~~~~~~g~~~-----~~~~~~~~~g~~~~~~~~~~~~~~l~~gd 75 (207)
T PF00557_consen 1 ECMRKAARIADAAMEAAMEALRPGMTEYEIAAAIERAMLRRHGGEE-----PAFPPIVGSGPNTDLPHYTPTDRRLQEGD 75 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCBHHHHHHHHHHHHHHHTTTTE-----ESSESEEEECCCCGETTTBCCSSBESTTE
T ss_pred CHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHcCCCc-----ccCCceEecCCcceecceeccceeeecCC
Confidence 6899999999999999999999999999999999998 56666432 34888999999999999999999999999
Q ss_pred EEEEEeeceeCcEEeceeceEeeCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHcCC-CcccCcccc
Q 018857 228 IVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGF-SVVKSYCGH 306 (349)
Q Consensus 228 iv~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~-~~~~~~~GH 306 (349)
+|.||+++.|+||++|++||+++| ++++++++++.++++++.+++.+|||++++||++++.+.++++|+ ....+.+||
T Consensus 76 ~v~id~~~~~~gy~~d~~Rt~~~G-~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~v~~~~~~~~~~~g~~~~~~~~~GH 154 (207)
T PF00557_consen 76 IVIIDFGPRYDGYHADIARTFVVG-PTPEQRRAYEAAREALEAAIEALRPGVTGSDVYEAVREVLEEYGLEEPYPHGLGH 154 (207)
T ss_dssp EEEEEEEEEETTEEEEEEEEEESS-SHHHHHHHHHHHHHHHHHHHHH-STTSBHHHHHHHHHHHHHHTTEGEEBTSSSEE
T ss_pred cceeeccceeeeeEeeeeeEEEEe-ecccccchhhhhHHHHHhHhhhcccccccchhhHHHHHHHHhhcccceeeecccc
Confidence 999999999999999999999999 999999999999999999999999999999999999999999999 566778999
Q ss_pred cCCCcCccC-CCcCCCCCCCCcccCce-EEEecceE-EcCCC
Q 018857 307 GIGELFHCA-PNIPHYSSLYHAFQPHI-FYIQKSFY-FMDNG 345 (349)
Q Consensus 307 gIG~~~he~-P~i~~~~~~~~~Le~GM-ftIEPgly-~~~~G 345 (349)
|||+.+|+. |+|.. .+++.+|++|| |+|||+++ .++.|
T Consensus 155 ~iG~~~~~~~P~i~~-~~~~~~l~~gmv~~iep~~~~~~~~~ 195 (207)
T PF00557_consen 155 GIGLEFHEPGPNIAR-PGDDTVLEPGMVFAIEPGLYFIPGWG 195 (207)
T ss_dssp EESSSSSEEEEEESS-TTTSSB--TTBEEEEEEEEEEETTSE
T ss_pred cccccccccceeeec-ccccceecCCCceeEeeeEEccCCCc
Confidence 999999997 99863 46888999999 99999999 55654
No 24
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity compared to other metallo-aminopeptidases, suggesting they play roles in regulation of biological processes rather than general protein degradation.
Probab=100.00 E-value=8.7e-36 Score=266.13 Aligned_cols=188 Identities=31% Similarity=0.549 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCcccccCCCCCCCCCCC
Q 018857 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGD 227 (349)
Q Consensus 148 Ie~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~H~~p~~r~L~~GD 227 (349)
|+.||+|+++++++++.+.+.++||+||.||.+.+++.+.++|+++ .|+..+.+|.|...+|+.|++++|++||
T Consensus 1 i~~~r~a~~i~~~~~~~~~~~~~~G~te~ei~~~~~~~~~~~g~~~------~~~~~v~~g~~~~~~h~~~~~~~i~~gd 74 (207)
T cd01066 1 IARLRKAAEIAEAAMAAAAEAIRPGVTEAEVAAAIEQALRAAGGYP------AGPTIVGSGARTALPHYRPDDRRLQEGD 74 (207)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHHcCCCC------CCCcEEEECccccCcCCCCCCCCcCCCC
Confidence 5789999999999999999999999999999999999999999943 3777888888888999999999999999
Q ss_pred EEEEEeeceeCcEEeceeceEeeCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHcCC-CcccCcccc
Q 018857 228 IVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGF-SVVKSYCGH 306 (349)
Q Consensus 228 iv~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~-~~~~~~~GH 306 (349)
+|++|+++.++||++|++|||++|+++++++++++.+.++++.+++.+|||+++.||++++++++++.|+ ....+++||
T Consensus 75 ~v~~d~g~~~~gy~~d~~rt~~~g~~~~~~~~~~~~~~~~~~~~~~~i~pG~~~~ei~~~~~~~~~~~g~~~~~~~~~Gh 154 (207)
T cd01066 75 LVLVDLGGVYDGYHADLTRTFVIGEPSDEQRELYEAVREAQEAALAALRPGVTAEEVDAAAREVLEEHGLGPNFGHRTGH 154 (207)
T ss_pred EEEEEeceeECCCccceeceeEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCccccCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 566778999
Q ss_pred cCCCcCccCCCcCCCCCCCCcccCce-EEEecceEEcC
Q 018857 307 GIGELFHCAPNIPHYSSLYHAFQPHI-FYIQKSFYFMD 343 (349)
Q Consensus 307 gIG~~~he~P~i~~~~~~~~~Le~GM-ftIEPgly~~~ 343 (349)
|||+.+||.|.+. .+++.+|++|| |+|||++|.++
T Consensus 155 ~iG~~~~e~~~~~--~~~~~~l~~gmv~~iep~~~~~~ 190 (207)
T cd01066 155 GIGLEIHEPPVLK--AGDDTVLEPGMVFAVEPGLYLPG 190 (207)
T ss_pred ccCcccCCCCCcC--CCCCCCcCCCCEEEECCEEEECC
Confidence 9999999999854 56788999999 99999999885
No 25
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=100.00 E-value=7.1e-36 Score=293.31 Aligned_cols=199 Identities=21% Similarity=0.282 Sum_probs=176.1
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCC------CCCCCCceeeecCCCcc
Q 018857 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPL------NYHFFPKSCCTSVNEVI 213 (349)
Q Consensus 140 r~vKs~~EIe~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l------~~~~fp~~v~~g~n~~~ 213 (349)
-.+|+++||+.||+|++|++++++.+.+.++||+|+.||+..+++++.++++. .+. ..+.|| +|++.|+.+
T Consensus 11 ~~i~~~~eI~~~r~Aa~Ia~~~l~~~~~~ikpG~t~~el~~~~~~~i~~~~a~-~~~~~~~~~~g~afp--t~vSvN~~v 87 (389)
T TIGR00495 11 YSLSNPEVVTKYKMAGEIANNVLKSVVEACSPGAKVVDICEKGDAFIMEETAK-IFKKEKEMEKGIAFP--TCISVNNCV 87 (389)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhh-hhcccccccCCCCCC--eEEecCCee
Confidence 36899999999999999999999999999999999999999999998887653 211 123455 566799999
Q ss_pred cccCC--C--CCCCCCCCEEEEEeeceeCcEEeceeceEeeCC-----CCHHHHHHHHHHHHHHHHHHHHcCCCCcHhHH
Q 018857 214 CHGIP--D--SRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGN-----ADEASRQLVQCTYECLEKAISIVKPGVRFREI 284 (349)
Q Consensus 214 ~H~~p--~--~r~L~~GDiv~iD~g~~~~GY~~D~~RT~~vG~-----~~~~~~~l~~~~~ea~~~ai~~~kPG~~~~eI 284 (349)
+|++| + ++.|++||+|+||+|+.++||++|++|||++|+ ++++++++++++++|++++++.+|||++.+||
T Consensus 88 ~H~~P~~~d~~~~Lk~GDvVkIDlG~~idGY~aD~arTv~vG~~~~~~~t~~~~~l~~aa~~A~~aai~~vkPG~~~~dI 167 (389)
T TIGR00495 88 GHFSPLKSDQDYILKEGDVVKIDLGCHIDGFIALVAHTFVVGVAQEEPVTGRKADVIAAAHLAAEAALRLVKPGNTNTQV 167 (389)
T ss_pred eCCCCCCCCCCcCcCCCCEEEEEEEEEECCEEEEEEEEEEECCcccccCCHHHHHHHHHHHHHHHHHHHHhCCCCcHHHH
Confidence 99999 2 489999999999999999999999999999995 56789999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCcccCcccccCCCcCcc-CCCc-CCCCC------CCCcccCce-EEEecceEE
Q 018857 285 GEVINRHATMSGFSVVKSYCGHGIGELFHC-APNI-PHYSS------LYHAFQPHI-FYIQKSFYF 341 (349)
Q Consensus 285 ~~ai~~~~~~~G~~~~~~~~GHgIG~~~he-~P~i-~~~~~------~~~~Le~GM-ftIEPgly~ 341 (349)
+++++++++++||.++++++|||||..+|+ .|.| +++.. ....|++|| |+|||.+-.
T Consensus 168 ~~ai~~v~~~~G~~~v~~~~gH~igr~~~~g~~~Ii~~~~~~~~~~~~~~~le~gev~aIEp~vs~ 233 (389)
T TIGR00495 168 TEAINKVAHSYGCTPVEGMLSHQLKQHVIDGEKVIISNPSDSQKKDHDTAEFEENEVYAVDILVST 233 (389)
T ss_pred HHHHHHHHHHcCCeecCCceeecccceeccCCCeeeecCCccccCCCCCCEecCCCEEEEeeeecC
Confidence 999999999999999999999999999998 7875 54431 246899999 999997763
No 26
>PRK08671 methionine aminopeptidase; Provisional
Probab=100.00 E-value=2.8e-35 Score=279.73 Aligned_cols=188 Identities=31% Similarity=0.528 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCcccccCCC---CCCC
Q 018857 147 QIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPD---SRKL 223 (349)
Q Consensus 147 EIe~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~H~~p~---~r~L 223 (349)
+|+.||+|++|++++++.+.+.++||+||.||++.++..+.+.|+.++ ||..+ +.|+..+|+.|. +++|
T Consensus 1 ~i~~~r~A~~I~~~~~~~~~~~i~pG~se~ei~~~~~~~i~~~g~~~a------fp~~v--s~n~~~~H~~p~~~d~~~l 72 (291)
T PRK08671 1 ELEKYLEAGKIASKVREEAAKLIKPGAKLLDVAEFVENRIRELGAKPA------FPCNI--SINEVAAHYTPSPGDERVF 72 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCccC------CCCEE--eeCCCccCCCCCCCCCccc
Confidence 589999999999999999999999999999999999999999998775 88655 467778999985 6899
Q ss_pred CCCCEEEEEeeceeCcEEeceeceEeeCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHcCCCcccCc
Q 018857 224 EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSY 303 (349)
Q Consensus 224 ~~GDiv~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~~~~~~~ 303 (349)
++||+|.||+|+.++||++|++||+++| ++++++++++.+|++++++.+|||++++||+++++++++++||..+.++
T Consensus 73 ~~GDvV~iD~G~~~dGY~aD~arT~~vG---~~~~~l~~a~~~a~~aai~~ikpG~~~~dv~~~i~~vi~~~G~~~~~~~ 149 (291)
T PRK08671 73 PEGDVVKLDLGAHVDGYIADTAVTVDLG---GKYEDLVEASEEALEAAIEVVRPGVSVGEIGRVIEETIRSYGFKPIRNL 149 (291)
T ss_pred CCCCEEEEEEeEEECCEEEEEEEEEEeC---hhHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccCCC
Confidence 9999999999999999999999999998 4788999999999999999999999999999999999999999888889
Q ss_pred ccccCCC-cCccCCCcCCC-CCCCCcccCce-EEEecceEEcCCCc
Q 018857 304 CGHGIGE-LFHCAPNIPHY-SSLYHAFQPHI-FYIQKSFYFMDNGQ 346 (349)
Q Consensus 304 ~GHgIG~-~~he~P~i~~~-~~~~~~Le~GM-ftIEPgly~~~~G~ 346 (349)
+|||||+ .+|+.|.|+.+ .+++.+|++|| |+||| ++.++.|.
T Consensus 150 ~GHgiG~~~~he~p~ip~~~~~~~~~le~GmV~aIEp-~~t~G~G~ 194 (291)
T PRK08671 150 TGHGLERYELHAGPSIPNYDEGGGVKLEEGDVYAIEP-FATDGEGK 194 (291)
T ss_pred cccCcCCCcccCCCccCccCCCCCceeCCCCEEEEcc-eEECCCCe
Confidence 9999997 79999998864 34678999999 99999 45677774
No 27
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=100.00 E-value=4e-35 Score=279.04 Aligned_cols=190 Identities=27% Similarity=0.371 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCcccccCCC---CC
Q 018857 145 PDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPD---SR 221 (349)
Q Consensus 145 ~~EIe~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~H~~p~---~r 221 (349)
-+||+.||+|++|++++++.+.+.++||+|+.||++.++..+.+.|+.++ ||..+ +.|+..+|+.|. ++
T Consensus 2 ~~~i~~~r~A~~I~~~~~~~~~~~i~~G~se~el~~~~e~~~~~~g~~~a------Fp~~v--s~n~~~~H~~p~~~d~~ 73 (295)
T TIGR00501 2 IERAEKWIEAGKIHSKVRREAADRIVPGVKLLEVAEFVENRIRELGAEPA------FPCNI--SINECAAHFTPKAGDKT 73 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHHcCCCCC------CCcce--ecCCEeeCCCCCCCcCc
Confidence 47899999999999999999999999999999999999999999999865 88765 478999999985 67
Q ss_pred CCCCCCEEEEEeeceeCcEEeceeceEeeCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHcCCCccc
Q 018857 222 KLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVK 301 (349)
Q Consensus 222 ~L~~GDiv~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~~~~~ 301 (349)
+|++||+|+||+|+.++||++|++|||++|+ .++++++++.+|++++++.+|||++++||+++++++++++||..+.
T Consensus 74 ~l~~GDvV~iD~G~~~dGY~aD~arT~~vG~---~~~~l~~a~~~A~~aai~~~kPGv~~~dV~~ai~~vi~~~G~~~i~ 150 (295)
T TIGR00501 74 VFKDGDVVKLDLGAHVDGYIADTAITVDLGD---QYDNLVKAAKDALYTAIKEIRAGVRVGEIGKAIQEVIESYGVKPIS 150 (295)
T ss_pred cCCCCCEEEEEEeEEECCEEEEEEEEEEeCc---HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCeeec
Confidence 8999999999999999999999999999985 3789999999999999999999999999999999999999999888
Q ss_pred CcccccCCC-cCccCCCcCCC-CCCCCcccCce-EEEecceEEcCCCc
Q 018857 302 SYCGHGIGE-LFHCAPNIPHY-SSLYHAFQPHI-FYIQKSFYFMDNGQ 346 (349)
Q Consensus 302 ~~~GHgIG~-~~he~P~i~~~-~~~~~~Le~GM-ftIEPgly~~~~G~ 346 (349)
+++|||||. .+|+.+.++.. .+++.+|++|| |+||| ++.++.|.
T Consensus 151 ~~~GHgig~~~~h~g~~ip~i~~~~~~~le~GmV~aIEP-~~~~G~G~ 197 (295)
T TIGR00501 151 NLTGHSMAPYRLHGGKSIPNVKERDTTKLEEGDVVAIEP-FATDGVGY 197 (295)
T ss_pred CCCCcceecccccCCCccCeecCCCCCEeCCCCEEEEce-eEECCcCe
Confidence 999999994 78998776654 35577999999 99999 57777774
No 28
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=100.00 E-value=4.3e-35 Score=290.37 Aligned_cols=198 Identities=21% Similarity=0.260 Sum_probs=173.0
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHc----CCCCCCCCCCCCCceeeecCCCccc
Q 018857 139 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITA----GGYPSPLNYHFFPKSCCTSVNEVIC 214 (349)
Q Consensus 139 ~r~vKs~~EIe~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~----g~~ps~l~~~~fp~~v~~g~n~~~~ 214 (349)
-+..+|++||+.||+|++|++++++.+.+.++||+|+.||+..++..+.+. |+.. ..+||+ ++|.|++.+
T Consensus 149 ~~~~~s~~EI~~~R~AaeIa~~vl~~~~~~IkpG~se~EIa~~ie~~ir~~~~~~G~~~----g~aFPt--~vS~N~~aa 222 (470)
T PTZ00053 149 ELEKLSEEQYQDLRRAAEVHRQVRRYAQSVIKPGVKLIDICERIESKSRELIEADGLKC----GWAFPT--GCSLNHCAA 222 (470)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhcCCcc----cCCCCc--eeecCcccc
Confidence 345589999999999999999999999999999999999999888766543 5432 246986 557999999
Q ss_pred ccCCC---CCCCCCCCEEEEEeeceeCcEEeceeceEeeCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 018857 215 HGIPD---SRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRH 291 (349)
Q Consensus 215 H~~p~---~r~L~~GDiv~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~ 291 (349)
|++|+ +++|++||+|.||+|+.++||++|++|||++| ++++++++++.+|+++||++++||++++||+++++++
T Consensus 223 H~tP~~gd~~vLk~GDvVkID~G~~vdGYiaD~ArTv~vg---~~~~~L~eAv~eA~~aaI~~~kpGv~~~dI~~AIqev 299 (470)
T PTZ00053 223 HYTPNTGDKTVLTYDDVCKLDFGTHVNGRIIDCAFTVAFN---PKYDPLLQATKDATNTGIKEAGIDVRLSDIGAAIQEV 299 (470)
T ss_pred CCCCCCCCCcEecCCCeEEEEEeEEECCEEEeEEEEEEeC---HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 99995 78999999999999999999999999999997 6889999999999999999999999999999999999
Q ss_pred HHHcCCC---------cccCcccccCCC-cCccCCCcCCC-CCCCCcccCce-EEEecceEEcCCCc
Q 018857 292 ATMSGFS---------VVKSYCGHGIGE-LFHCAPNIPHY-SSLYHAFQPHI-FYIQKSFYFMDNGQ 346 (349)
Q Consensus 292 ~~~~G~~---------~~~~~~GHgIG~-~~he~P~i~~~-~~~~~~Le~GM-ftIEPgly~~~~G~ 346 (349)
++++||. .+++++|||||+ .+|+.|.++.+ .++..+|++|| |+|||-+- ++.|.
T Consensus 300 ies~G~e~~Gk~f~~k~I~nltGHgIG~y~iHe~k~iP~v~~~~~~~LeeGmVfaIEPf~s-tG~G~ 365 (470)
T PTZ00053 300 IESYEVEIKGKTYPIKSIRNLNGHSIGPYIIHGGKSVPIVKGGENTRMEEGELFAIETFAS-TGRGY 365 (470)
T ss_pred HHHcCCcccCcccccccccCCcccCCCCccccCCCcCCeeCCCCCCEecCCCEEEEcceee-CCCCe
Confidence 9999974 468899999998 89997777765 35567999999 99999644 55553
No 29
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=100.00 E-value=1.2e-34 Score=275.53 Aligned_cols=187 Identities=29% Similarity=0.429 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCcccccCCC---CCCCC
Q 018857 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPD---SRKLE 224 (349)
Q Consensus 148 Ie~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~H~~p~---~r~L~ 224 (349)
++.||+|++|++++++++.+.++||+||.||++.+++.+.++|+.++ ||. ++|.|+..+|+.|+ +++|+
T Consensus 1 ~~~~r~Aa~I~~~a~~~~~~~i~pG~te~ei~~~~~~~i~~~G~~~a------fp~--~is~n~~~~H~~p~~~d~~~l~ 72 (291)
T cd01088 1 LEKYREAGEIHRQVRKYAQSLIKPGMTLLEIAEFVENRIRELGAGPA------FPV--NLSINECAAHYTPNAGDDTVLK 72 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHcCCCCC------CCc--eeccCCEeeCCCCCCCCCcccC
Confidence 36899999999999999999999999999999999999999998765 774 46889999999996 48999
Q ss_pred CCCEEEEEeeceeCcEEeceeceEeeCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHcCCCcccCcc
Q 018857 225 DGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYC 304 (349)
Q Consensus 225 ~GDiv~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~~~~~~~~ 304 (349)
+||+|.||+|+.++||++|++|||++|+ +++++++++++|++++++.+|||++++||+++++++++++||..+.+++
T Consensus 73 ~GDvV~iD~G~~~dGY~sD~arT~~vg~---~~~~l~ea~~~A~~~ai~~ikPG~~~~dV~~ai~~~i~~~G~~~~~~~~ 149 (291)
T cd01088 73 EGDVVKLDFGAHVDGYIADSAFTVDFDP---KYDDLLEAAKEALNAAIKEAGPDVRLGEIGEAIEEVIESYGFKPIRNLT 149 (291)
T ss_pred CCCEEEEEEEEEECCEEEEEEEEEecCh---hHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCEEeecCC
Confidence 9999999999999999999999999985 7889999999999999999999999999999999999999999888999
Q ss_pred cccCCC-cCccCCCcCCC-CCCCCcccCce-EEEecceEEcCCCc
Q 018857 305 GHGIGE-LFHCAPNIPHY-SSLYHAFQPHI-FYIQKSFYFMDNGQ 346 (349)
Q Consensus 305 GHgIG~-~~he~P~i~~~-~~~~~~Le~GM-ftIEPgly~~~~G~ 346 (349)
|||||. .+|+.|.|+.+ ..++.+|++|| |+||| ++.++.|.
T Consensus 150 GHgig~~~~h~~~~ip~~~~~~~~~le~gmV~aIEp-~~s~G~G~ 193 (291)
T cd01088 150 GHSIERYRLHAGKSIPNVKGGEGTRLEEGDVYAIEP-FATTGKGY 193 (291)
T ss_pred ccCccCccccCCCccCccCCCCCCEeCCCCEEEEce-eEECCCCe
Confidence 999995 79999887765 34577999999 99999 66777775
No 30
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor.
Probab=100.00 E-value=1.3e-34 Score=268.30 Aligned_cols=194 Identities=14% Similarity=0.210 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----hccCC--CcHHHHHHHHHHHHHHcCCCCCCCC----CCCCCceeeecCCC-cccc
Q 018857 148 IERMRETCRIAREVLDAAAR-----MIRPG--VTTDEIDRVVHEATITAGGYPSPLN----YHFFPKSCCTSVNE-VICH 215 (349)
Q Consensus 148 Ie~~R~A~~ia~~~l~~~~~-----~i~pG--vte~Ei~~~~~~~~~~~g~~ps~l~----~~~fp~~v~~g~n~-~~~H 215 (349)
++.||+|++++..+|...+. .|.+| +|+.+|+..++..+.+.+.....++ -+.|++++++|.|. ..+|
T Consensus 1 ~~~~~~a~~~~~~~~~~~~~~~~~~~id~~~~~t~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~y~~iv~sG~~~~~l~h 80 (243)
T cd01091 1 LNNIKKASDATVDVLKKFFVDEVEEIIDQEKKVTHSKLSDKVEKAIEDKKKYKAKLDPEQLDWCYPPIIQSGGNYDLLKS 80 (243)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhCchhhhcCCCHHHcCcccCCeEeECcCcccCCC
Confidence 46899999999999976555 99999 9999999999999988774411121 35699999999998 8999
Q ss_pred cCCCCCCCCCCCEEEEEeeceeCcEEeceeceEeeCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHc
Q 018857 216 GIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMS 295 (349)
Q Consensus 216 ~~p~~r~L~~GDiv~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~ 295 (349)
+.++++.++.|++|++|+|++|+||++|++|||++| ++++++++|++++++++++++++|||++++||++++.+++++.
T Consensus 81 ~~~s~~~~~~~~~vl~d~G~~y~gY~sditRT~~v~-p~~~~~~~y~~~~~a~~~~i~~lkpG~~~~dv~~~a~~~i~~~ 159 (243)
T cd01091 81 SSSSDKLLYHFGVIICSLGARYKSYCSNIARTFLID-PTSEQQKNYNFLLALQEEILKELKPGAKLSDVYQKTLDYIKKK 159 (243)
T ss_pred CCCCccccCCCCEEEEEeCcccCCEeecceEEEEcC-CCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999997 7999999999999999999999999999999999999999998
Q ss_pred CCCc---ccCcccccCCCcCccCCCcCCCCCCCCcccCce-EEEecceE-EcC
Q 018857 296 GFSV---VKSYCGHGIGELFHCAPNIPHYSSLYHAFQPHI-FYIQKSFY-FMD 343 (349)
Q Consensus 296 G~~~---~~~~~GHgIG~~~he~P~i~~~~~~~~~Le~GM-ftIEPgly-~~~ 343 (349)
|... ..+.+|||||+++||.|.+.. ++++.+|++|| |+||||+| +++
T Consensus 160 ~~~~~~~~~~~~GHgiGle~hE~~~~l~-~~~~~~L~~GMvf~vepGi~~~~~ 211 (243)
T cd01091 160 KPELEPNFTKNLGFGIGLEFRESSLIIN-AKNDRKLKKGMVFNLSIGFSNLQN 211 (243)
T ss_pred ChhHHHhCcCCcccccCcccccCccccC-CCCCCCcCCCCEEEEeCCcccccC
Confidence 7543 345599999999999886533 56788999999 99999999 543
No 31
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=100.00 E-value=6.7e-34 Score=261.33 Aligned_cols=193 Identities=21% Similarity=0.319 Sum_probs=163.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCC--CCC-CCC--CCCCCceeeecCCCcccccCC----
Q 018857 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGG--YPS-PLN--YHFFPKSCCTSVNEVICHGIP---- 218 (349)
Q Consensus 148 Ie~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~--~ps-~l~--~~~fp~~v~~g~n~~~~H~~p---- 218 (349)
+++||+|++|++++++.+.+.++||+||.||+...+..+.+... ++. ..+ ...||.+ ++.|+..+|+.|
T Consensus 1 ~~~~r~A~~I~~~~~~~~~~~i~pG~te~ei~~~~e~~i~~~~~~~~~~~~~g~~g~~~~~~--v~~n~~~~H~~p~~~~ 78 (228)
T cd01089 1 VTKYKTAGQIANKVLKQVISLCVPGAKVVDLCEKGDKLILEELGKVYKKEKKLEKGIAFPTC--ISVNNCVCHFSPLKSD 78 (228)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHhhcccccCcccccCCCCcCeE--eccCceeecCCCCCCC
Confidence 36899999999999999999999999999998887777766322 221 122 2345544 457999999996
Q ss_pred CCCCCCCCCEEEEEeeceeCcEEeceeceEeeCCCCH-----HHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHH
Q 018857 219 DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADE-----ASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHAT 293 (349)
Q Consensus 219 ~~r~L~~GDiv~iD~g~~~~GY~~D~~RT~~vG~~~~-----~~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~ 293 (349)
++++|++||+|+||+|+.|+||++|++|||++|++++ +++++++++.++++++++++|||++++||+++++++++
T Consensus 79 ~~~~l~~Gd~v~iD~g~~~~GY~sD~tRT~~vG~~~~~~~~~~~~~~~~~~~ea~~~~~~~~kpG~~~~dv~~a~~~~~~ 158 (228)
T cd01089 79 ATYTLKDGDVVKIDLGCHIDGYIAVVAHTIVVGAEAETPVTGKKADVIAAAHYALEAALRLLRPGNQNSDITEAIQKVIV 158 (228)
T ss_pred CCcccCCCCEEEEEEEEEECCEEEEEEEEEEeCCcCccccchHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999998875 89999999999999999999999999999999999999
Q ss_pred HcCCCcccCcccccCCCcCccCCCcCCCCCCCCcccCce-EEEecceEEcCCC
Q 018857 294 MSGFSVVKSYCGHGIGELFHCAPNIPHYSSLYHAFQPHI-FYIQKSFYFMDNG 345 (349)
Q Consensus 294 ~~G~~~~~~~~GHgIG~~~he~P~i~~~~~~~~~Le~GM-ftIEPgly~~~~G 345 (349)
++||.++..++||++|..++-.|... .-..+|++|| |++||.+++++.|
T Consensus 159 ~~G~~~~~~~~~h~~g~~~~~~~~~~---~~~~~l~~gmvf~~ep~~~~~g~~ 208 (228)
T cd01089 159 DYGCTPVEGVLSHQLKRVVSSGEGKA---KLVECVKHGLLFPYPVLYEKEGEV 208 (228)
T ss_pred HcCCEEecCccccCcCceEecCCCCc---cchhhccCCcccccceeEccCCCe
Confidence 99999888889888887544433221 1256899999 9999999998865
No 32
>KOG2414 consensus Putative Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=100.00 E-value=7e-33 Score=263.02 Aligned_cols=200 Identities=22% Similarity=0.334 Sum_probs=183.5
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCccccc
Q 018857 137 QHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHG 216 (349)
Q Consensus 137 ~~~r~vKs~~EIe~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~H~ 216 (349)
..+|.||||+|++.||+||.|+.+++-..+..-|++..|..|.+.++..+..+|+.-. .||+.|+.|.|....|+
T Consensus 223 ~~lRlIKSpaEl~~Mr~a~~I~sq~~~~~m~~sr~~~~E~~l~a~~eye~r~rGad~~-----AYpPVVAgG~na~tIHY 297 (488)
T KOG2414|consen 223 ERLRLIKSPAELELMREACNIASQTFSETMFGSRDFHNEAALSALLEYECRRRGADRL-----AYPPVVAGGKNANTIHY 297 (488)
T ss_pred HHHHccCCHHHHHHHHHHhhhhhHHHHHHHhhccCCcchhhHhhhhhhheeecCcccc-----ccCCeeecCcccceEEE
Confidence 4589999999999999999999999999999999999999999999999999999753 69999999999999999
Q ss_pred CCCCCCCCCCCEEEEEeeceeCcEEeceeceEee-CCCCHHHHHHHHHHHHHHHHHHHHcCC--CCcHhHHHHHHHHHHH
Q 018857 217 IPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQLVQCTYECLEKAISIVKP--GVRFREIGEVINRHAT 293 (349)
Q Consensus 217 ~p~~r~L~~GDiv~iD~g~~~~GY~~D~~RT~~v-G~~~~~~~~l~~~~~ea~~~ai~~~kP--G~~~~eI~~ai~~~~~ 293 (349)
.-++..|.++|.|++|.|+.++||.+|++|||++ |+.++.|++||+++++.++..|+.|+| |.++++|+....+.+.
T Consensus 298 ~~Nnq~l~d~emVLvDaGcelgGYvSDITRTWP~sGkFs~~Qr~LYeavL~vq~ecik~c~~~~g~sL~~l~~~s~~Ll~ 377 (488)
T KOG2414|consen 298 VRNNQLLKDDEMVLVDAGCELGGYVSDITRTWPISGKFSDAQRDLYEAVLQVQEECIKYCKPSNGTSLSQLFERSNELLG 377 (488)
T ss_pred eecccccCCCcEEEEecCcccCceEccceeccCCCCccCcHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 899999999999999999999999999 9999999987665554
Q ss_pred ----HcCCC------------cccCcccccCCCcCccCCCcCCCCCCCCcccCce-EEEecceEEcCCC
Q 018857 294 ----MSGFS------------VVKSYCGHGIGELFHCAPNIPHYSSLYHAFQPHI-FYIQKSFYFMDNG 345 (349)
Q Consensus 294 ----~~G~~------------~~~~~~GHgIG~~~he~P~i~~~~~~~~~Le~GM-ftIEPgly~~~~G 345 (349)
+.|.. ...|+.||=+|+++|+-|.++. +..|+||| ||||||+|+|++-
T Consensus 378 ~~Lk~lGI~kt~~ee~~~~~klcPHhVgHyLGmDVHD~p~v~r----~~pL~pg~ViTIEPGvYIP~d~ 442 (488)
T KOG2414|consen 378 QELKELGIRKTDREEMIQAEKLCPHHVGHYLGMDVHDCPTVSR----DIPLQPGMVITIEPGVYIPEDD 442 (488)
T ss_pred HHHHHhCcccchHHHHHhhhhcCCcccchhcCcccccCCCCCC----CccCCCCceEEecCceecCccC
Confidence 45642 3456799999999999998873 57899999 9999999999875
No 33
>KOG2737 consensus Putative metallopeptidase [General function prediction only]
Probab=99.97 E-value=1.4e-30 Score=245.13 Aligned_cols=202 Identities=19% Similarity=0.337 Sum_probs=174.4
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCccccc
Q 018857 137 QHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHG 216 (349)
Q Consensus 137 ~~~r~vKs~~EIe~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~H~ 216 (349)
.+.|.|||+.||+.||.|++|+++++.+++++++||+.|.++.+.+......+|+-.. .+|..++++|.|..+.|+
T Consensus 180 ~E~RviKs~~EieviRya~kISseaH~~vM~~~~pg~~Eyq~eslF~hh~y~~GGcRh----~sYtcIc~sG~ns~vLHY 255 (492)
T KOG2737|consen 180 AECRVIKSSLEIEVIRYANKISSEAHIEVMRAVRPGMKEYQLESLFLHHSYSYGGCRH----LSYTCICASGDNSAVLHY 255 (492)
T ss_pred hhheeeCCHHHHHHHHHHHhhccHHHHHHHHhCCchHhHHhHHHHHHHhhhccCCccc----cccceeeecCCCcceeec
Confidence 4589999999999999999999999999999999999999999999999988887433 358889999999999998
Q ss_pred ----CCCCCCCCCCCEEEEEeeceeCcEEeceeceEee-CCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 018857 217 ----IPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRH 291 (349)
Q Consensus 217 ----~p~~r~L~~GDiv~iD~g~~~~GY~~D~~RT~~v-G~~~~~~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~ 291 (349)
.|+++.+++||.+++|+|+.|.+|.+|+|++|+. |+.+++|+.+|++++.++.++++++|||+.+.|++....++
T Consensus 256 gha~apNd~~iqdgd~cLfDmGaey~~yaSDITcsFP~nGKFTadqk~VYnaVLda~navm~a~KpGv~W~Dmh~La~kv 335 (492)
T KOG2737|consen 256 GHAGAPNDRTIQDGDLCLFDMGAEYHFYASDITCSFPVNGKFTADQKLVYNAVLDASNAVMEAMKPGVWWVDMHKLAEKV 335 (492)
T ss_pred cccCCCCCcccCCCCEEEEecCcceeeeecccceeccCCCccchhHHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHH
Confidence 8999999999999999999999999999999999 89999999999999999999999999999999998766554
Q ss_pred H----HHcCC---------------CcccCcccccCCCcCccCCCcC-CCC----------CCCCcccCce-EEEecceE
Q 018857 292 A----TMSGF---------------SVVKSYCGHGIGELFHCAPNIP-HYS----------SLYHAFQPHI-FYIQKSFY 340 (349)
Q Consensus 292 ~----~~~G~---------------~~~~~~~GHgIG~~~he~P~i~-~~~----------~~~~~Le~GM-ftIEPgly 340 (349)
+ ++.|. -+..|-+||-||+++|+----+ .+. ...+.|++|| +|||||.|
T Consensus 336 lle~laq~gIl~gdvd~m~~ar~~~vF~PHGLGH~lGlDvHDvGGyp~~~~rp~~P~l~~LR~aR~L~e~MviTvEPGcY 415 (492)
T KOG2737|consen 336 LLEHLAQMGILKGDVDEMVEARLGAVFMPHGLGHFLGLDVHDVGGYPEGVERPDEPGLRSLRTARHLKEGMVITVEPGCY 415 (492)
T ss_pred HHHHHHhcCceeccHHHHHHhccCeeeccccccccccccccccCCCCCCCCCCCcchhhhhhhhhhhhcCcEEEecCChh
Confidence 4 44443 1345668999999999732111 111 2235899999 99999999
Q ss_pred Ec
Q 018857 341 FM 342 (349)
Q Consensus 341 ~~ 342 (349)
|-
T Consensus 416 Fi 417 (492)
T KOG2737|consen 416 FI 417 (492)
T ss_pred HH
Confidence 74
No 34
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=99.84 E-value=3e-20 Score=187.51 Aligned_cols=208 Identities=16% Similarity=0.288 Sum_probs=169.0
Q ss_pred CCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHHH-----HHHhccCC--CcHHHHHHHHHHHHHHcC----CCCC
Q 018857 126 GTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDA-----AARMIRPG--VTTDEIDRVVHEATITAG----GYPS 194 (349)
Q Consensus 126 g~~~~e~~~~~~~~r~vKs~~EIe~~R~A~~ia~~~l~~-----~~~~i~pG--vte~Ei~~~~~~~~~~~g----~~ps 194 (349)
|....++...+..+.+||++.||+.+|+|++++..+|.. +..+|..| ||...|...+..++.+.. ..|.
T Consensus 121 ~fn~vDis~~ls~l~avKDd~Ei~~irksa~~s~~vm~k~~~~~~~~aiD~ekkvthskLsD~~e~~I~~~k~s~~l~~~ 200 (960)
T KOG1189|consen 121 GFNKVDISLGLSKLFAVKDDEEIANIRKSAAASSAVMNKYLVDELVEAIDEEKKVTHSKLSDLMESAIEDKKYSPGLDPD 200 (960)
T ss_pred CCceeehhhhhhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhccccCcccCcc
Confidence 344444444567789999999999999999999999974 34455555 677777777777776543 3332
Q ss_pred CCCCCCCCceeeecCC-CcccccCCCCCCCCCCCEEEEEeeceeCcEEeceeceEeeCCCCHHHHHHHHHHHHHHHHHHH
Q 018857 195 PLNYHFFPKSCCTSVN-EVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAIS 273 (349)
Q Consensus 195 ~l~~~~fp~~v~~g~n-~~~~H~~p~~r~L~~GDiv~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~ai~ 273 (349)
.+ -+.||+++.+|.+ ..-+....+++.| + +|+..+|++|++||+.++|||+| .|+.++++.|+..+.+++++++
T Consensus 201 ~~-d~cY~PIiqSGg~ydlk~sa~s~~~~L--~-~I~cs~G~RynsYCSNv~RT~Li-dpssemq~nY~fLl~aqe~il~ 275 (960)
T KOG1189|consen 201 LL-DMCYPPIIQSGGKYDLKPSAVSDDNHL--H-VILCSLGIRYNSYCSNVSRTYLI-DPSSEMQENYEFLLAAQEEILK 275 (960)
T ss_pred cc-ccccChhhhcCCccccccccccccccc--c-eEEeeccchhhhhhccccceeee-cchHHHHHHHHHHHHHHHHHHH
Confidence 22 3569999999988 4445556677888 4 88889999999999999999999 5799999999999999999999
Q ss_pred HcCCCCcHhHHHHHHHHHHHHcCCCcccCc---ccccCCCcCccCCCcCCCCCCCCcccCce-EEEecce
Q 018857 274 IVKPGVRFREIGEVINRHATMSGFSVVKSY---CGHGIGELFHCAPNIPHYSSLYHAFQPHI-FYIQKSF 339 (349)
Q Consensus 274 ~~kPG~~~~eI~~ai~~~~~~~G~~~~~~~---~GHgIG~~~he~P~i~~~~~~~~~Le~GM-ftIEPgl 339 (349)
.||||+..++||.++.+++++.+...+.++ +|.|||++|.|.-++.+ ++|+.+|++|| |.|.-|+
T Consensus 276 ~lrpG~ki~dVY~~~l~~v~k~~Pel~~~~~k~lG~~iGlEFREssl~in-aKnd~~lk~gmvFni~lGf 344 (960)
T KOG1189|consen 276 LLRPGTKIGDVYEKALDYVEKNKPELVPNFTKNLGFGIGLEFRESSLVIN-AKNDRVLKKGMVFNISLGF 344 (960)
T ss_pred hhcCCCchhHHHHHHHHHHHhcCcchhhhhhhhcccccceeeeccccccc-ccchhhhccCcEEEEeecc
Confidence 999999999999999999999998754433 89999999999988776 68889999999 8776554
No 35
>KOG2413 consensus Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=99.84 E-value=3.2e-20 Score=184.82 Aligned_cols=204 Identities=18% Similarity=0.199 Sum_probs=172.1
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHHHH----hccCC--CcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeee-cC
Q 018857 137 QHVVEIKTPDQIERMRETCRIAREVLDAAAR----MIRPG--VTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCT-SV 209 (349)
Q Consensus 137 ~~~r~vKs~~EIe~~R~A~~ia~~~l~~~~~----~i~pG--vte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~-g~ 209 (349)
..++++|++.|++.||.+----..|+-..+. .+.-| +||.+++..++++-.++..+.. ..|+++.++ |+
T Consensus 302 ~~~kAiKN~~E~~gmr~shirD~~Alve~~~wle~~~~~g~~itE~~~A~kle~fR~~~~~fmg----lSFeTIS~s~G~ 377 (606)
T KOG2413|consen 302 SRAKAIKNDDELKGMRNSHIRDGAALVEYFAWLEKELHKGYTITEYDAADKLEEFRSRQDHFMG----LSFETISSSVGP 377 (606)
T ss_pred HHHHHhcChHHhhhhhhcchhhHHHHHHHHHHHhhhhhcCcccchhhHHHHHHHHHHhhccccC----cCcceeeccCCC
Confidence 4467999999999999876444445544443 44456 8999999999988777766543 359999866 99
Q ss_pred CCcccccCCC---CCCCCCCCEEEEEeeceeCcEEeceeceEeeCCCCHHHHHHHHHHHHHHHHHHHHcCC-CCcHhHHH
Q 018857 210 NEVICHGIPD---SRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKP-GVRFREIG 285 (349)
Q Consensus 210 n~~~~H~~p~---~r~L~~GDiv~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~ai~~~kP-G~~~~eI~ 285 (349)
|.++.|+.|. ++.+.+..+.++|.|+.|.-=.+|+|||+.+|+|++++++.|..++...-+..+++-| |+....++
T Consensus 378 NgAviHYsP~~e~n~~i~~~kiyL~DSGaQY~DGTTDvTRT~HfgePs~eek~~yT~VLkGhi~la~~vFP~~t~g~~lD 457 (606)
T KOG2413|consen 378 NGAVIHYSPPAETNRIVSPDKIYLCDSGAQYLDGTTDVTRTVHFGEPTAEEKEAYTLVLKGHIALARAVFPKGTKGSVLD 457 (606)
T ss_pred CceeeecCCCccccceecCceEEEEccCcccccCccceeEEEecCCCCHHHHHHHHHHHHhhhHhhhcccCCCCCcchhH
Confidence 9999999995 4689999999999999997778999999999999999999999999999998888887 88899999
Q ss_pred HHHHHHHHHcCCCcccCcccccCCC--cCccCCCcCCCC--CCCCcccCce-EEEecceEEcCCC
Q 018857 286 EVINRHATMSGFSVVKSYCGHGIGE--LFHCAPNIPHYS--SLYHAFQPHI-FYIQKSFYFMDNG 345 (349)
Q Consensus 286 ~ai~~~~~~~G~~~~~~~~GHgIG~--~~he~P~i~~~~--~~~~~Le~GM-ftIEPgly~~~~G 345 (349)
..++..+.+.|.++.+. +|||||. .+||+|....+. ++...|++|| +++|||+|-++.+
T Consensus 458 ~laR~~LW~~gLDy~Hg-TGHGVG~fLnVhE~P~~is~r~~~~~~~l~ag~~~s~EPGYY~dg~f 521 (606)
T KOG2413|consen 458 ALARSALWKAGLDYGHG-TGHGVGSFLNVHEGPIGIGYRPYSSNFPLQAGMVFSIEPGYYKDGEF 521 (606)
T ss_pred HHHHHHHHhhccccCCC-CCcccccceEeccCCceeeeeecCCCchhcCceEeccCCcccccCcc
Confidence 99999999999988765 9999995 689999877654 5667899999 9999999987764
No 36
>KOG2775 consensus Metallopeptidase [General function prediction only]
Probab=99.66 E-value=1.7e-15 Score=139.70 Aligned_cols=193 Identities=22% Similarity=0.277 Sum_probs=157.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHH----HcCCCCCCCCCCCCCceeeecCCCcccccCC
Q 018857 143 KTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATI----TAGGYPSPLNYHFFPKSCCTSVNEVICHGIP 218 (349)
Q Consensus 143 Ks~~EIe~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~----~~g~~ps~l~~~~fp~~v~~g~n~~~~H~~p 218 (349)
-..+...-+|+|+.+.+++-..+.+.|+||||..||...++.... +.|... ..+||+- .|.|.+..|++|
T Consensus 80 ~~~~i~~d~rraAE~HRqvR~yv~s~ikPGmtm~ei~e~iEnttR~li~e~gl~a----Gi~FPtG--~SlN~cAAHyTp 153 (397)
T KOG2775|consen 80 TESDIYQDLRRAAEAHRQVRKYVQSIIKPGMTMIEICETIENTTRKLILENGLNA----GIGFPTG--CSLNHCAAHYTP 153 (397)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHhccccc----cccCCCc--ccccchhhhcCC
Confidence 345667889999999999999999999999999999988875433 333332 3568854 567999999998
Q ss_pred C---CCCCCCCCEEEEEeeceeCcEEeceeceEeeCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHc
Q 018857 219 D---SRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMS 295 (349)
Q Consensus 219 ~---~r~L~~GDiv~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~ 295 (349)
+ ..+|+.+|++.||+|...+|-..|.+.|+.+ ++....|+.+++++...+|+...-.++..||+++|+++++.+
T Consensus 154 NaGd~tVLqydDV~KiDfGthi~GrIiDsAFTv~F---~p~~d~Ll~AvreaT~tGIkeaGiDvRlcdiG~aiqEVmeSy 230 (397)
T KOG2775|consen 154 NAGDKTVLKYDDVMKIDFGTHIDGRIIDSAFTVAF---NPKYDPLLAAVREATNTGIKEAGIDVRLCDIGEAIQEVMESY 230 (397)
T ss_pred CCCCceeeeecceEEEeccccccCeEeeeeeEEee---CccccHHHHHHHHHHhhhhhhcCceeeehhhhHHHHHHhhhe
Confidence 5 5789999999999999999999999999987 567788999999999999999999999999999999999997
Q ss_pred CCC---------cccCcccccCCCc-CccCCCcCCC-CCCCCcccCce-EEEecceEEcCCC
Q 018857 296 GFS---------VVKSYCGHGIGEL-FHCAPNIPHY-SSLYHAFQPHI-FYIQKSFYFMDNG 345 (349)
Q Consensus 296 G~~---------~~~~~~GHgIG~~-~he~P~i~~~-~~~~~~Le~GM-ftIEPgly~~~~G 345 (349)
... .++++.||+|+.. +|..-.||.. .+..+.+|+|- |+||- +..++.|
T Consensus 231 EvEi~Gk~~~VKpIrnLnGHSI~~yrIH~gksVPiVkgge~trmee~e~yAIET-FgSTGkG 291 (397)
T KOG2775|consen 231 EVEINGKTYQVKPIRNLNGHSIAQYRIHGGKSVPIVKGGEQTRMEEGEIYAIET-FGSTGKG 291 (397)
T ss_pred EEEeCCceecceeccccCCCcccceEeecCcccceecCCcceeecCCeeEEEEe-eccCCcc
Confidence 542 3678899999974 6777666643 34567899997 88884 4444444
No 37
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=99.61 E-value=6.6e-15 Score=146.65 Aligned_cols=206 Identities=14% Similarity=0.196 Sum_probs=154.2
Q ss_pred CCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHH----hccCC--CcHHHHHHHHHHHHH----------HcCCCCC
Q 018857 131 EPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAAR----MIRPG--VTTDEIDRVVHEATI----------TAGGYPS 194 (349)
Q Consensus 131 e~~~~~~~~r~vKs~~EIe~~R~A~~ia~~~l~~~~~----~i~pG--vte~Ei~~~~~~~~~----------~~g~~ps 194 (349)
++...++.+..+|+.+||+.+|.+++.....|+...+ ++..+ +|...+...+...+- +.|-...
T Consensus 159 DvslgLsk~~~~KD~~E~an~~~ss~~s~~~M~~~~~em~~~~D~~~kit~~KlsD~mes~iddv~f~q~~s~~l~~~~~ 238 (1001)
T COG5406 159 DVSLGLSKMFLTKDAEEIANCRASSAASSVLMRYFVKEMEMLWDGAFKITHGKLSDLMESLIDDVEFFQTKSLKLGDIDL 238 (1001)
T ss_pred hhhhhhhHHhccccHHHHhhccccchHHHHHHHHHHHHHHHHHhhhhhhccchHHHHhhhhcchhhhhhhcCccccccch
Confidence 3344456788999999999999999999988874332 22222 333444433332211 1111111
Q ss_pred CCCCCCCCceeeecCC-CcccccCCCCCCCCCCCEEEEEeeceeCcEEeceeceEeeCCCCHHHHHHHHHHHHHHHHHHH
Q 018857 195 PLNYHFFPKSCCTSVN-EVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAIS 273 (349)
Q Consensus 195 ~l~~~~fp~~v~~g~n-~~~~H~~p~~r~L~~GDiv~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~ai~ 273 (349)
-+--|.|.+++.+|.. ...+-.+.+++.| -||+|+..+|.+|+|||+.++||+++ +|+.++++.|+.++.+|...+.
T Consensus 239 d~lew~ytpiiqsg~~~Dl~psa~s~~~~l-~gd~vl~s~GiRYn~YCSn~~RT~l~-dp~~e~~~Ny~fl~~lQk~i~~ 316 (1001)
T COG5406 239 DQLEWCYTPIIQSGGSIDLTPSAFSFPMEL-TGDVVLLSIGIRYNGYCSNMSRTILT-DPDSEQQKNYEFLYMLQKYILG 316 (1001)
T ss_pred hhhhhhcchhhccCceeecccccccCchhh-cCceEEEEeeeeeccccccccceEEe-CCchHhhhhHHHHHHHHHHHHh
Confidence 1112567888888865 3334444455555 48999999999999999999999999 5899999999999999999999
Q ss_pred HcCCCCcHhHHHHHHHHHHHHcCCCcccCc---ccccCCCcCccCCCcCCCCCCCCcccCce-EEEecce
Q 018857 274 IVKPGVRFREIGEVINRHATMSGFSVVKSY---CGHGIGELFHCAPNIPHYSSLYHAFQPHI-FYIQKSF 339 (349)
Q Consensus 274 ~~kPG~~~~eI~~ai~~~~~~~G~~~~~~~---~GHgIG~~~he~P~i~~~~~~~~~Le~GM-ftIEPgl 339 (349)
.+|||+..++||..+.+++.+.|.....+| .|-+||++|.+.-.+.+ .+|.++|+.|| |.|.-|+
T Consensus 317 ~~rpG~~~g~iY~~~~~yi~~~~pel~pnF~~nvG~~igiefR~s~~~~n-vkn~r~lq~g~~fnis~gf 385 (1001)
T COG5406 317 LVRPGTDSGIIYSEAEKYISSNGPELGPNFIYNVGLMIGIEFRSSQKPFN-VKNGRVLQAGCIFNISLGF 385 (1001)
T ss_pred hcCCCCCchhHHHHHHHHHHhcCCccCchHhhhhhhhcccccccccccee-ccCCceeccccEEEEeecc
Confidence 999999999999999999999998765554 79999999998766655 46679999999 9887654
No 38
>KOG2776 consensus Metallopeptidase [General function prediction only]
Probab=99.60 E-value=2.4e-14 Score=135.10 Aligned_cols=168 Identities=23% Similarity=0.338 Sum_probs=139.8
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcC--CCCC---CCCCCCCCceeeecCCCcccc
Q 018857 141 EIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAG--GYPS---PLNYHFFPKSCCTSVNEVICH 215 (349)
Q Consensus 141 ~vKs~~EIe~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g--~~ps---~l~~~~fp~~v~~g~n~~~~H 215 (349)
.|-++.-+..+|-|++|+..++..+.+.+.||.+..||...-..++.+.- .|-. .--...||+ |+++|..+||
T Consensus 14 tia~~~vvtKYk~AgeI~n~~lk~V~~~~~~gasv~eiC~~GD~~i~E~t~kiYK~eK~~~KGIAfPT--~Isvnncv~h 91 (398)
T KOG2776|consen 14 TIANDSVVTKYKMAGEIVNKVLKSVVELCQPGASVREICEKGDSLILEETGKIYKKEKDFEKGIAFPT--SISVNNCVCH 91 (398)
T ss_pred ccccHHHHhhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHhhhHHHHHHHHHHHhhhhhhhccccccc--eecccceeec
Confidence 56788889999999999999999999999999999999877666655431 1111 011235884 5678999999
Q ss_pred cCCC----CCCCCCCCEEEEEeeceeCcEEeceeceEeeCC-----CCHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHH
Q 018857 216 GIPD----SRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGN-----ADEASRQLVQCTYECLEKAISIVKPGVRFREIGE 286 (349)
Q Consensus 216 ~~p~----~r~L~~GDiv~iD~g~~~~GY~~D~~RT~~vG~-----~~~~~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ 286 (349)
+.|- +..|++||+|.||+|+.++||.+-++.|++|+. ++....+++.++.-|.+++++.++||.+-.+|-+
T Consensus 92 ~sPlksd~~~~Lk~GDvVKIdLG~HiDGfiA~vaHT~VV~~~~~~~vtG~kADvI~AAh~A~eaa~rllkpgn~n~~vT~ 171 (398)
T KOG2776|consen 92 FSPLKSDADYTLKEGDVVKIDLGVHIDGFIALVAHTIVVGPAPDTPVTGRKADVIAAAHLAAEAALRLLKPGNTNTQVTR 171 (398)
T ss_pred cCcCCCCCcccccCCCEEEEEeeeeeccceeeeeeeEEeccCCCCcccCchhHHHHHHHHHHHHHHHHhCCCCCCchhhH
Confidence 9982 578999999999999999999999999999985 4467889999999999999999999999999999
Q ss_pred HHHHHHHHcCCCcccCcccccCCC
Q 018857 287 VINRHATMSGFSVVKSYCGHGIGE 310 (349)
Q Consensus 287 ai~~~~~~~G~~~~~~~~GHgIG~ 310 (349)
+|.+.+.++++-.+....-|..=.
T Consensus 172 ~i~k~aas~~c~pVegmlshql~~ 195 (398)
T KOG2776|consen 172 AIVKTAASYGCKPVEGMLSHQLKQ 195 (398)
T ss_pred HHHHHHHHhCCcccccchhHHHHh
Confidence 999999999997655545555443
No 39
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=99.34 E-value=3.7e-13 Score=138.21 Aligned_cols=49 Identities=35% Similarity=0.807 Sum_probs=43.0
Q ss_pred cccc-cCCccccccchhhhcCCCCCCccccChhhhhhchhHHHHhhhhcc
Q 018857 14 SCVR-CGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKAK 62 (349)
Q Consensus 14 ~c~~-c~~~~~l~c~~c~~~~~~~~~~~fc~~~cf~~~w~~hk~~h~~~~ 62 (349)
+|.- =+|+|+||||+|+|+|+++..||||||+|||.+|++||.+|+.+.
T Consensus 64 ~c~~h~~~~a~lqCp~C~k~~~~~~~s~fCsq~CFk~~w~~Hk~~h~~~~ 113 (606)
T PLN03144 64 VCSVHPSEPATLQCVGCVKAKLPVSKSYHCSPKCFSDAWRHHRVLHERAA 113 (606)
T ss_pred eEeecCCCcccccCccchhcCCCcCcceeeCHHHHHHHHHHHHHHHHHhh
Confidence 4554 478999999999999997678999999999999999999997443
No 40
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....
Probab=97.96 E-value=3e-06 Score=55.33 Aligned_cols=35 Identities=40% Similarity=1.115 Sum_probs=29.9
Q ss_pred ccccCCccccccchhhhcCCCCCCccccChhhhhhchhHHHH
Q 018857 15 CVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKS 56 (349)
Q Consensus 15 c~~c~~~~~l~c~~c~~~~~~~~~~~fc~~~cf~~~w~~hk~ 56 (349)
|..|++++...|+.|. ..+|||++|++.+|..||.
T Consensus 1 C~~C~~~~~~~C~~C~-------~~~YCs~~Cq~~~w~~Hk~ 35 (37)
T PF01753_consen 1 CAVCGKPALKRCSRCK-------SVYYCSEECQRADWPYHKF 35 (37)
T ss_dssp -TTTSSCSSEEETTTS-------SSEESSHHHHHHHHHHHCC
T ss_pred CcCCCCCcCCcCCCCC-------CEEecCHHHHHHHHHHHhh
Confidence 6678998888999996 4689999999999999975
No 41
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity compared to other metallo-aminopeptidases, suggesting they play roles in regulation of biological processes rather than general protein degradation.
Probab=97.52 E-value=0.0015 Score=57.75 Aligned_cols=102 Identities=25% Similarity=0.289 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCcccccCCCCCCCCCCCE
Q 018857 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDI 228 (349)
Q Consensus 149 e~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~H~~p~~r~L~~GDi 228 (349)
+.+|++.+.+.++++.+.+.++||++..||...+++.+.+.|.........+. .+.....+...-...++.+|++|.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~i~pG~~~~ei~~~~~~~~~~~g~~~~~~~~~Gh--~iG~~~~e~~~~~~~~~~~l~~gmv 179 (207)
T cd01066 102 DEQRELYEAVREAQEAALAALRPGVTAEEVDAAAREVLEEHGLGPNFGHRTGH--GIGLEIHEPPVLKAGDDTVLEPGMV 179 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCccccCCCCCcc--ccCcccCCCCCcCCCCCCCcCCCCE
Confidence 57888999999999999999999999999999999999998863211111111 1111111111111124679999999
Q ss_pred EEEEeeceeC-cEEeceeceEeeCC
Q 018857 229 VNIDVTVYYK-GVHGDLNETYFVGN 252 (349)
Q Consensus 229 v~iD~g~~~~-GY~~D~~RT~~vG~ 252 (349)
+.|+.+.+.. ++..-+..|++|.+
T Consensus 180 ~~iep~~~~~~~~g~~~ed~v~vt~ 204 (207)
T cd01066 180 FAVEPGLYLPGGGGVRIEDTVLVTE 204 (207)
T ss_pred EEECCEEEECCCcEEEeeeEEEEeC
Confidence 9999999887 58888999999853
No 42
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=97.51 E-value=3.2e-05 Score=72.13 Aligned_cols=39 Identities=38% Similarity=0.954 Sum_probs=34.1
Q ss_pred cccccCCccc-cccchhhhcCCCCCCccccChhhhhhchhHHHHhhh
Q 018857 14 SCVRCGKPAH-LQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHL 59 (349)
Q Consensus 14 ~c~~c~~~~~-l~c~~c~~~~~~~~~~~fc~~~cf~~~w~~hk~~h~ 59 (349)
.|+.||.+.. .+|..|+.. -||+|+|+|-+|-.||++.+
T Consensus 321 fCstCG~~ga~KrCs~CKav-------~YCdqeCQk~hWf~HKK~C~ 360 (396)
T KOG1710|consen 321 FCSTCGHPGAKKRCSQCKAV-------AYCDQECQKFHWFIHKKVCS 360 (396)
T ss_pred cccccCCCCccchhhhhHHH-------HHHHHHHHHhhhHHHHHHHH
Confidence 4888998766 999999953 38999999999999999886
No 43
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline.
Probab=97.30 E-value=0.0032 Score=56.28 Aligned_cols=101 Identities=22% Similarity=0.296 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCcccccCCCCCCCCCCCE
Q 018857 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDI 228 (349)
Q Consensus 149 e~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~H~~p~~r~L~~GDi 228 (349)
+.+|++.+.+.++++.+.+.++||++-.||.+.+++.+.+.|..+......++. +.....+...-...++++|++|.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~pG~~~~di~~~~~~~~~~~g~~~~~~~~~Gh~--iG~~~~e~p~i~~~~~~~l~~gmv 180 (208)
T cd01092 103 DELKEIYEIVLEAQQAAIKAVKPGVTAKEVDKAARDVIEEAGYGEYFIHRTGHG--VGLEVHEAPYISPGSDDVLEEGMV 180 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCccccCCCCCccc--cCcccCcCCCcCCCCCCCcCCCCE
Confidence 466788889999999999999999999999999999999988643211111111 111111110001125789999999
Q ss_pred EEEEeeceeCcE-EeceeceEeeC
Q 018857 229 VNIDVTVYYKGV-HGDLNETYFVG 251 (349)
Q Consensus 229 v~iD~g~~~~GY-~~D~~RT~~vG 251 (349)
+.|+.+.+..|+ ..-+..|++|.
T Consensus 181 ~~iep~~~~~~~~g~~~ed~v~vt 204 (208)
T cd01092 181 FTIEPGIYIPGKGGVRIEDDVLVT 204 (208)
T ss_pred EEECCeEEecCCCEEEeeeEEEEC
Confidence 999988876444 44467888874
No 44
>PLN03158 methionine aminopeptidase; Provisional
Probab=97.20 E-value=0.0021 Score=63.98 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=72.7
Q ss_pred cEEeceeceEeeCCCC--HHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHcCC-CcccCccccc--CCCcCc
Q 018857 239 GVHGDLNETYFVGNAD--EASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGF-SVVKSYCGHG--IGELFH 313 (349)
Q Consensus 239 GY~~D~~RT~~vG~~~--~~~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~-~~~~~~~GHg--IG~~~h 313 (349)
..++++.++..|..+. +.++++.+.+.++++++++++|||++-.||..++.+.+.++|. +...++.+.. +....
T Consensus 126 ~~~~~~~~~~~IKsp~EIe~mR~A~~ia~~al~~a~~~irpGvTe~EI~~~v~~~~~~~Ga~ps~l~y~~fp~svcts~- 204 (396)
T PLN03158 126 EPNSDLQHSVEIKTPEQIQRMRETCRIAREVLDAAARAIKPGVTTDEIDRVVHEATIAAGGYPSPLNYHFFPKSCCTSV- 204 (396)
T ss_pred ccccccccceeeCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHcCCccccccccCCCceeeecc-
Confidence 3456777888886554 4567888899999999999999999999999999999887763 3222221211 11111
Q ss_pred cCCCcCCCCCCCCcccCce-EEEecceEEcC
Q 018857 314 CAPNIPHYSSLYHAFQPHI-FYIQKSFYFMD 343 (349)
Q Consensus 314 e~P~i~~~~~~~~~Le~GM-ftIEPgly~~~ 343 (349)
...+.|+..++++|++|. +.|..+.++.+
T Consensus 205 -N~~i~Hgip~~r~L~~GDiV~iDvg~~~~G 234 (396)
T PLN03158 205 -NEVICHGIPDARKLEDGDIVNVDVTVYYKG 234 (396)
T ss_pred -cccccCCCCCCccCCCCCEEEEEEeEEECC
Confidence 123455545677899998 88988888754
No 45
>PRK05716 methionine aminopeptidase; Validated
Probab=97.11 E-value=0.0052 Score=56.94 Aligned_cols=100 Identities=17% Similarity=0.237 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCC--ccccc-C-CCCCCCCC
Q 018857 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNE--VICHG-I-PDSRKLED 225 (349)
Q Consensus 150 ~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~--~~~H~-~-p~~r~L~~ 225 (349)
..|++.+.+.++.+++.++++||++-.||.+.+++.+.+.|..+. .++.++. +.....+ .+.++ . .++.+|++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~pG~~~~dv~~~~~~~~~~~g~~~~-~~~~GHg--iG~~~~e~p~~~~~~~~~~~~~le~ 195 (252)
T PRK05716 119 EDKRLCEVTKEALYLGIAAVKPGARLGDIGHAIQKYAEAEGFSVV-REYCGHG--IGRKFHEEPQIPHYGAPGDGPVLKE 195 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCeee-cCccccc--cCCccCCCCccCcCCCCCCCCEecC
Confidence 456677788899999999999999999999999999999887542 2222222 1111111 11111 1 24678999
Q ss_pred CCEEEEEeecee------------------CcEEeceeceEeeCC
Q 018857 226 GDIVNIDVTVYY------------------KGVHGDLNETYFVGN 252 (349)
Q Consensus 226 GDiv~iD~g~~~------------------~GY~~D~~RT~~vG~ 252 (349)
|.++.|+.+.+. +++..-+..|++|.+
T Consensus 196 Gmv~~vEp~i~~~~~~~~~~~~~~~~~~~~g~~g~~~ed~v~Vt~ 240 (252)
T PRK05716 196 GMVFTIEPMINAGKREVKTLKDGWTVVTKDGSLSAQYEHTVAVTE 240 (252)
T ss_pred CCEEEEccEEEcCCCceEEcCCCCEEEccCCCcEEeeeeEEEEcC
Confidence 999999988764 345666788888864
No 46
>PRK15173 peptidase; Provisional
Probab=97.00 E-value=0.008 Score=58.21 Aligned_cols=104 Identities=12% Similarity=0.118 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCcccccCCCCCCCCCCCE
Q 018857 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDI 228 (349)
Q Consensus 149 e~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~H~~p~~r~L~~GDi 228 (349)
+..|++.+++.+++++++++++||++-.||...+.+.+.+.|.......+.+.......|..+.......++.+|++|.+
T Consensus 202 ~~~~~~y~~v~ea~~~~~~~irPG~~~~dv~~a~~~~~~~~G~~~~~~~~~GHGiG~~lg~~E~P~i~~~~~~~Le~GMV 281 (323)
T PRK15173 202 EITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKKSGLPNYNRGHLGHGNGVFLGLEESPFVSTHATESFTSGMV 281 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCccccCCCCCCcCCCCCCcCCCCCCCCCCCCccCCCCE
Confidence 34577888899999999999999999999999999999988753221111111111111223221111124678999999
Q ss_pred EEEEeeceeCcE-EeceeceEeeCC
Q 018857 229 VNIDVTVYYKGV-HGDLNETYFVGN 252 (349)
Q Consensus 229 v~iD~g~~~~GY-~~D~~RT~~vG~ 252 (349)
+.|+.+.+..|. -.-+..|++|.+
T Consensus 282 ~tiEPgiy~~g~ggvriEDtvlVTe 306 (323)
T PRK15173 282 LSLETPYYGYNLGSIMIEDMILINK 306 (323)
T ss_pred EEECCEEEcCCCcEEEEeeEEEEcC
Confidence 999998875433 356789999853
No 47
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=96.98 E-value=0.0094 Score=55.13 Aligned_cols=100 Identities=16% Similarity=0.148 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCc--cccc--CCCCCCCCC
Q 018857 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEV--ICHG--IPDSRKLED 225 (349)
Q Consensus 150 ~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~--~~H~--~p~~r~L~~ 225 (349)
.+|++..++.++++++++.++||++-.||...+.+.+.+.|..+. .++.++. +.....+. +..+ ..++.+|++
T Consensus 117 ~~~~~~~~~~~a~~~~~~~~kpG~~~~~v~~~~~~~~~~~g~~~~-~~~~GHg--iG~~~~e~p~i~~~~~~~~~~~l~~ 193 (247)
T TIGR00500 117 EAEKLLECTEESLYKAIEEAKPGNRIGEIGAAIQKYAEAKGFSVV-REYCGHG--IGRKFHEEPQIPNYGKKFTNVRLKE 193 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCEec-cCccCCc--cCcccCCCCccCCcCcCCCCCEecC
Confidence 356777788899999999999999999999999999999886542 1222221 22222211 1111 123678999
Q ss_pred CCEEEEEeecee------------------CcEEeceeceEeeCC
Q 018857 226 GDIVNIDVTVYY------------------KGVHGDLNETYFVGN 252 (349)
Q Consensus 226 GDiv~iD~g~~~------------------~GY~~D~~RT~~vG~ 252 (349)
|+++.|+.+.+. +++..-+..|++|.+
T Consensus 194 gmv~~iEp~i~~~~~~~~~~~~~~~~~~~~~~~g~ried~v~Vt~ 238 (247)
T TIGR00500 194 GMVFTIEPMVNTGTEEITTAADGWTVKTKDGSLSAQFEHTIVITD 238 (247)
T ss_pred CCEEEEeeEEEcCCCcEEECCCCCEEEccCCCeEEEEeEEEEEcC
Confidence 999999988765 245566778888853
No 48
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=96.90 E-value=0.008 Score=55.20 Aligned_cols=88 Identities=16% Similarity=0.142 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHcCCCccc-CcccccCCCcCccCCCcCCCCCCCCcccCce-
Q 018857 255 EASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVK-SYCGHGIGELFHCAPNIPHYSSLYHAFQPHI- 332 (349)
Q Consensus 255 ~~~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~~~~~-~~~GHgIG~~~he~P~i~~~~~~~~~Le~GM- 332 (349)
+.++++.+.+.++++++++.++||++-.||..++.+.+.+.|..... .+.++...........++|+..++.+|++|+
T Consensus 2 ~~lr~A~~i~~~~~~~~~~~~~pG~tE~ev~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~l~~Gd~ 81 (238)
T cd01086 2 EGMREAGRIVAEVLDELAKAIKPGVTTKELDQIAHEFIEEHGAYPAPLGYYGFPKSICTSVNEVVCHGIPDDRVLKDGDI 81 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCcceecCCCCceeCCCCCCcccCCCCE
Confidence 45788999999999999999999999999999999999999974211 1111110000001112345444578999998
Q ss_pred EEEecceEEc
Q 018857 333 FYIQKSFYFM 342 (349)
Q Consensus 333 ftIEPgly~~ 342 (349)
+.++.+..+.
T Consensus 82 v~id~g~~~~ 91 (238)
T cd01086 82 VNIDVGVELD 91 (238)
T ss_pred EEEEEEEEEC
Confidence 8888876654
No 49
>PRK09795 aminopeptidase; Provisional
Probab=96.88 E-value=0.014 Score=57.25 Aligned_cols=106 Identities=18% Similarity=0.188 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCcccccCCCCCCC
Q 018857 144 TPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKL 223 (349)
Q Consensus 144 s~~EIe~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~H~~p~~r~L 223 (349)
.+++-+.+|++-+++.++.+++.++++||++-.||++.+++.+.+.|.........+++ +.....+.......++.+|
T Consensus 235 ~~~~~~~~~~~~~~v~~a~~~~~~~~rpG~~~~~v~~~~~~~~~~~g~~~~~~h~~GHg--iGl~~he~p~i~~~~~~~l 312 (361)
T PRK09795 235 VSAESHPLFNVYQIVLQAQLAAISAIRPGVRCQQVDDAARRVITEAGYGDYFGHNTGHA--IGIEVHEDPRFSPRDTTTL 312 (361)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCccCCCCCCcc--CCccccCCCCcCCCCCCCc
Confidence 35555678899999999999999999999999999999999998887543211111111 1111112111111246889
Q ss_pred CCCCEEEEEeeceeCcE-EeceeceEeeC
Q 018857 224 EDGDIVNIDVTVYYKGV-HGDLNETYFVG 251 (349)
Q Consensus 224 ~~GDiv~iD~g~~~~GY-~~D~~RT~~vG 251 (349)
++|.++.|+.+.+..|. -.-+..|++|.
T Consensus 313 ~~gmv~~iEpgiy~~~~~gvriEd~v~vt 341 (361)
T PRK09795 313 QPGMLLTVEPGIYLPGQGGVRIEDVVLVT 341 (361)
T ss_pred CCCCEEEECCEEEeCCCCEEEEeeEEEEC
Confidence 99999999999987553 34578888884
No 50
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=96.86 E-value=0.015 Score=53.41 Aligned_cols=100 Identities=12% Similarity=0.077 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCccccc------CCCCCCC
Q 018857 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHG------IPDSRKL 223 (349)
Q Consensus 150 ~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~H~------~p~~r~L 223 (349)
..|++..++.++++++.++++||++-.||++.+.+.+.++|...... +.+.-.+.....+. +|. ..++++|
T Consensus 110 ~~~~~~~~~~ea~~~~~~~~rpG~~~~~v~~a~~~~~~~~G~~~~~~--~~~GHgiGl~~he~-~~~~g~~~~~~~~~~L 186 (228)
T cd01090 110 AHLKIWEANVAVHERGLELIKPGARCKDIAAELNEMYREHDLLRYRT--FGYGHSFGVLSHYY-GREAGLELREDIDTVL 186 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCcccc--cccCcccccccccC-CCccccccCCCCCCcc
Confidence 36778888999999999999999999999999999999988543211 11111222222221 111 1235889
Q ss_pred CCCCEEEEEeeceeC----c-EEeceeceEeeCC
Q 018857 224 EDGDIVNIDVTVYYK----G-VHGDLNETYFVGN 252 (349)
Q Consensus 224 ~~GDiv~iD~g~~~~----G-Y~~D~~RT~~vG~ 252 (349)
++|.++.|+.+.++. | .-.-+..|++|.+
T Consensus 187 e~GMV~~iEP~i~~~~~~~g~gG~ried~v~Vt~ 220 (228)
T cd01090 187 EPGMVVSMEPMIMLPEGQPGAGGYREHDILVINE 220 (228)
T ss_pred CCCCEEEECCEEeecccCCCCcEEEeeeEEEECC
Confidence 999999999998763 2 2333788888853
No 51
>PRK14575 putative peptidase; Provisional
Probab=96.85 E-value=0.011 Score=58.93 Aligned_cols=101 Identities=11% Similarity=0.103 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceee--ecCCCcccccCCCCCCCCCCC
Q 018857 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCC--TSVNEVICHGIPDSRKLEDGD 227 (349)
Q Consensus 150 ~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~--~g~n~~~~H~~p~~r~L~~GD 227 (349)
..|++.+++.++.++++++++||++-.||++.+.+.+.+.|.........++ .+. .|..+.-.-..-++.+|++|.
T Consensus 286 ~~~~~~~~~~~a~~~~~~~~rpG~~~~dv~~a~~~~~~~~G~~~~~~~~~GH--GiG~~lg~~e~P~i~~~~~~~Le~GM 363 (406)
T PRK14575 286 ITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKKSGLPNYNRGHLGH--GNGVFLGLEESPFVSTHATESFTSGM 363 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCccccCCCCCC--cccCCCCCccCCCCCCCCCCCcCCCC
Confidence 4567778889999999999999999999999999998888753221111111 122 122221111112467899999
Q ss_pred EEEEEeeceeCcE-EeceeceEeeCC
Q 018857 228 IVNIDVTVYYKGV-HGDLNETYFVGN 252 (349)
Q Consensus 228 iv~iD~g~~~~GY-~~D~~RT~~vG~ 252 (349)
++.|+.+.+..|. -.-+..|++|.+
T Consensus 364 v~tiEpgiy~~g~gGvriEDtvlVT~ 389 (406)
T PRK14575 364 VLSLETPYYGYNLGSIMIEDMILINK 389 (406)
T ss_pred EEEECCeeecCCCcEEEEEeEEEEcC
Confidence 9999998876543 356889999953
No 52
>PRK12897 methionine aminopeptidase; Reviewed
Probab=96.80 E-value=0.011 Score=54.89 Aligned_cols=100 Identities=14% Similarity=0.154 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCc--ccccC--CCCCCCCC
Q 018857 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEV--ICHGI--PDSRKLED 225 (349)
Q Consensus 150 ~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~--~~H~~--p~~r~L~~ 225 (349)
..|++.+++.++++.++++++||++..|++..+.+.+.+.|.... .++.++. +..+..+. +.+.. .+..+|++
T Consensus 118 ~~~~~~~~~~~a~~~~i~~~kpG~~~~dv~~a~~~~~~~~g~~~~-~~~~GHg--iGl~~hE~P~i~~~~~~~~~~~l~~ 194 (248)
T PRK12897 118 EAEKLLLVAENALYKGIDQAVIGNRVGDIGYAIESYVANEGFSVA-RDFTGHG--IGKEIHEEPAIFHFGKQGQGPELQE 194 (248)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHcCCccC-CCeEECc--cCCcccCCCccCCCCCCCCCCCcCC
Confidence 356666788899999999999999999999999999988876432 2222222 22222221 12211 23568999
Q ss_pred CCEEEEEeece-----------------eCc-EEeceeceEeeCC
Q 018857 226 GDIVNIDVTVY-----------------YKG-VHGDLNETYFVGN 252 (349)
Q Consensus 226 GDiv~iD~g~~-----------------~~G-Y~~D~~RT~~vG~ 252 (349)
|.++.+..+.+ .+| +..-+..|++|.+
T Consensus 195 Gmv~tiEP~~~~~~~~~~~~~~~~~~~~~~g~~g~r~edtv~Vt~ 239 (248)
T PRK12897 195 GMVITIEPIVNVGMRYSKVDLNGWTARTMDGKLSAQYEHTIAITK 239 (248)
T ss_pred CCEEEECCeEecCCCceEECCCCcEEEcCCCCeEeecceEEEEeC
Confidence 99999998887 244 6677888888853
No 53
>PRK14576 putative endopeptidase; Provisional
Probab=96.74 E-value=0.017 Score=57.69 Aligned_cols=104 Identities=13% Similarity=0.092 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCcccccCCCCCCCCCCCE
Q 018857 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDI 228 (349)
Q Consensus 149 e~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~H~~p~~r~L~~GDi 228 (349)
+..|++.+++.++.++++++++||++-.||+..+.+.+.+.|.........++..-...|..+.......++.+|++|.+
T Consensus 284 ~~~~~~~~~~~~a~~a~~~~~rPG~~~~dv~~a~~~~~~~~G~~~~~~~~~GHgiG~~l~~~e~P~i~~~~~~~Le~GMv 363 (405)
T PRK14576 284 KLTQQIYDTIRTGHEHMLSMVAPGVKLKAVFDSTMAVIKTSGLPHYNRGHLGHGDGVFLGLEEVPFVSTQATETFCPGMV 363 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCCCcCcCCCcCCCCCCccCCCCE
Confidence 34667788889999999999999999999999999999888763221111122111112223221111124678999999
Q ss_pred EEEEeeceeCc-EEeceeceEeeCC
Q 018857 229 VNIDVTVYYKG-VHGDLNETYFVGN 252 (349)
Q Consensus 229 v~iD~g~~~~G-Y~~D~~RT~~vG~ 252 (349)
+.++.+.+..| .-.-+..|++|.+
T Consensus 364 ~~vEp~~y~~g~ggvriEDtvlVTe 388 (405)
T PRK14576 364 LSLETPYYGIGVGSIMLEDMILITD 388 (405)
T ss_pred EEECCceeecCCCEEEEeeEEEECC
Confidence 99997766544 2344788999853
No 54
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor.
Probab=96.66 E-value=0.017 Score=53.61 Aligned_cols=100 Identities=15% Similarity=0.171 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCce----eeecCCCcccccCC-CCCCC
Q 018857 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKS----CCTSVNEVICHGIP-DSRKL 223 (349)
Q Consensus 149 e~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~----v~~g~n~~~~H~~p-~~r~L 223 (349)
+.+|++.+++.++.+++.++++||++-.||...+.+.+.+.+..... .|+.. +.....+....-.+ ++++|
T Consensus 119 ~~~~~~y~~~~~a~~~~i~~lkpG~~~~dv~~~a~~~i~~~~~~~~~----~~~~~~GHgiGle~hE~~~~l~~~~~~~L 194 (243)
T cd01091 119 SEQQKNYNFLLALQEEILKELKPGAKLSDVYQKTLDYIKKKKPELEP----NFTKNLGFGIGLEFRESSLIINAKNDRKL 194 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhChhHHH----hCcCCcccccCcccccCccccCCCCCCCc
Confidence 45677888999999999999999999999999999888876521110 12222 22222221111112 46889
Q ss_pred CCCCEEEEEeece-e----------CcEEeceeceEeeCC
Q 018857 224 EDGDIVNIDVTVY-Y----------KGVHGDLNETYFVGN 252 (349)
Q Consensus 224 ~~GDiv~iD~g~~-~----------~GY~~D~~RT~~vG~ 252 (349)
++|.++.|..|.+ . +.|..-++.|++|.+
T Consensus 195 ~~GMvf~vepGi~~~~~~~~~~~~~~~~gv~ieDtV~Vt~ 234 (243)
T cd01091 195 KKGMVFNLSIGFSNLQNPEPKDKESKTYALLLSDTILVTE 234 (243)
T ss_pred CCCCEEEEeCCcccccCccccCccCCeeEEEEEEEEEEcC
Confidence 9999999999987 3 257888999999964
No 55
>TIGR02993 ectoine_eutD ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown.
Probab=96.63 E-value=0.017 Score=57.40 Aligned_cols=99 Identities=14% Similarity=0.160 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCc----ccccCC-CCCCCC
Q 018857 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEV----ICHGIP-DSRKLE 224 (349)
Q Consensus 150 ~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~----~~H~~p-~~r~L~ 224 (349)
.+|++.+++.++.++++++++||++-.||++.+.+.+.+.|.... ...+++ +..+.... .+.-.+ ++.+|+
T Consensus 271 ~~~~~~~~~~~a~~~~i~~ikpG~~~~dv~~~~~~~~~~~G~~~~--h~~Ghg--iGl~~~~~~~e~~~~l~~~~~~~L~ 346 (391)
T TIGR02993 271 AFLDAEKAVLEGMEAGLEAAKPGNTCEDIANAFFAVLKKYGIHKD--SRTGYP--IGLSYPPDWGERTMSLRPGDNTVLK 346 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCccC--CCceee--eccCcCCCCCCccccccCCCCceec
Confidence 466788899999999999999999999999999999988886431 122222 11111100 001112 467899
Q ss_pred CCCEEEEEeeceeCcEEeceeceEeeCC
Q 018857 225 DGDIVNIDVTVYYKGVHGDLNETYFVGN 252 (349)
Q Consensus 225 ~GDiv~iD~g~~~~GY~~D~~RT~~vG~ 252 (349)
+|.++.|+.+.+..|+-.-+..|++|.+
T Consensus 347 ~GMv~tvEpgiy~~~~Gvried~v~VT~ 374 (391)
T TIGR02993 347 PGMTFHFMTGLWMEDWGLEITESILITE 374 (391)
T ss_pred CCCEEEEcceeEeCCCCeEEeeEEEECC
Confidence 9999999999988877677889999853
No 56
>PRK12318 methionine aminopeptidase; Provisional
Probab=96.58 E-value=0.023 Score=54.23 Aligned_cols=86 Identities=20% Similarity=0.237 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCc--ccccCC-CCCCCCCC
Q 018857 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEV--ICHGIP-DSRKLEDG 226 (349)
Q Consensus 150 ~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~--~~H~~p-~~r~L~~G 226 (349)
.+|++..++.++++++++.++||++..||...+.+.+.+.|.... ..+.++. +.....+. +.+..+ ++.+|++|
T Consensus 159 ~~~~~~~~~~~a~~~~i~~~rpG~~~~dv~~a~~~~~~~~G~~~~-~~~~GHg--IGl~~hE~P~i~~~~~~~~~~L~~G 235 (291)
T PRK12318 159 IKKKVCQASLECLNAAIAILKPGIPLYEIGEVIENCADKYGFSVV-DQFVGHG--VGIKFHENPYVPHHRNSSKIPLAPG 235 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccC-CCcccCC--cCccccCCCcccCcCCCCCCEeCCC
Confidence 457788889999999999999999999999999999998876432 1122222 22222221 112112 34689999
Q ss_pred CEEEEEeeceeC
Q 018857 227 DIVNIDVTVYYK 238 (349)
Q Consensus 227 Div~iD~g~~~~ 238 (349)
.++.|+.+.+..
T Consensus 236 MV~~iEP~i~~~ 247 (291)
T PRK12318 236 MIFTIEPMINVG 247 (291)
T ss_pred CEEEECCEEEcC
Confidence 999999887764
No 57
>cd01087 Prolidase Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Probab=96.53 E-value=0.026 Score=51.99 Aligned_cols=103 Identities=18% Similarity=0.195 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcC----CCC------------CCCCCCCCCceeeecCCCcc
Q 018857 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAG----GYP------------SPLNYHFFPKSCCTSVNEVI 213 (349)
Q Consensus 150 ~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g----~~p------------s~l~~~~fp~~v~~g~n~~~ 213 (349)
..|++...+.+++++++++++||++-.||.+.+.+.+.+.+ ..+ ..+..+.+.-.+.....+..
T Consensus 104 ~~~~~~~~~~~a~~~~i~~~rpG~~~~~v~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~h~~GhgiGl~~~e~p 183 (243)
T cd01087 104 EQRELYEAVLAAQKAAIAACKPGVSYEDIHLLAHRVLAEGLKELGILKGDVDEIVESGAYAKFFPHGLGHYLGLDVHDVG 183 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcCcccCchHhhhhhhhhhhhcCCCCccccCcccccCc
Confidence 45677788889999999999999999999999888876543 111 01100111111222222221
Q ss_pred cc--cCCCCCCCCCCCEEEEEeeceeCc-----------EEeceeceEeeCC
Q 018857 214 CH--GIPDSRKLEDGDIVNIDVTVYYKG-----------VHGDLNETYFVGN 252 (349)
Q Consensus 214 ~H--~~p~~r~L~~GDiv~iD~g~~~~G-----------Y~~D~~RT~~vG~ 252 (349)
.. ...++.+|++|.++.|..+.+..+ +-.-+..|++|.+
T Consensus 184 ~~~~~~~~~~~l~~GMv~~iEp~iy~~~~~~~~~~~~~~~g~~ied~v~Vt~ 235 (243)
T cd01087 184 GYLRYLRRARPLEPGMVITIEPGIYFIPDLLDVPEYFRGGGIRIEDDVLVTE 235 (243)
T ss_pred cccccCCCCCCCCCCCEEEECCEEEeCCcccccccccceeEEEeeeEEEEcC
Confidence 11 112468899999999999998754 6667888998853
No 58
>PRK12896 methionine aminopeptidase; Reviewed
Probab=96.50 E-value=0.033 Score=51.67 Aligned_cols=100 Identities=21% Similarity=0.281 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCC---ccccc-CC-CCCCCC
Q 018857 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNE---VICHG-IP-DSRKLE 224 (349)
Q Consensus 150 ~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~---~~~H~-~p-~~r~L~ 224 (349)
.++++.+.+.++++++++.++||++-.||...+.+.+.+.|.... .++.++. +.....+ .+.++ .+ ++.+|+
T Consensus 124 ~~~~~~~~~~~a~~~~~~~~kpG~~~~~v~~~~~~~~~~~G~~~~-~~~~GHg--iG~~~he~p~~~~~~~~~~~~~~le 200 (255)
T PRK12896 124 EAEKLCRVAEEALWAGIKQVKAGRPLNDIGRAIEDFAKKNGYSVV-RDLTGHG--VGRSLHEEPSVILTYTDPLPNRLLR 200 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCEec-cCcccCC--cCcccccCCCccccCCCCCCCCEec
Confidence 356677788889999999999999999999999999998876431 2222222 1111111 11111 12 367899
Q ss_pred CCCEEEEEeecee------------------CcEEeceeceEeeCC
Q 018857 225 DGDIVNIDVTVYY------------------KGVHGDLNETYFVGN 252 (349)
Q Consensus 225 ~GDiv~iD~g~~~------------------~GY~~D~~RT~~vG~ 252 (349)
+|.++.|+.+.+. +.+..-+..|++|.+
T Consensus 201 ~GmV~~iEp~i~~g~~~~~~~~~~~~~~~~~~~~~~~~edtv~vt~ 246 (255)
T PRK12896 201 PGMTLAVEPFLNLGAKDAETLDDGWTVVTPDKSLSAQFEHTVVVTR 246 (255)
T ss_pred CCcEEEEeceEEcCCCceEEcCCCCEEEecCCCeEEEEEEEEEEcC
Confidence 9999999977652 355666889998864
No 59
>PRK07281 methionine aminopeptidase; Reviewed
Probab=96.45 E-value=0.028 Score=53.60 Aligned_cols=85 Identities=11% Similarity=0.118 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCc--cccc-CC-CCCCCCC
Q 018857 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEV--ICHG-IP-DSRKLED 225 (349)
Q Consensus 150 ~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~--~~H~-~p-~~r~L~~ 225 (349)
..|++.+++.++++++++.++||++-.||+..+++.+.+.|... ..++.++. +.....+. +.+. .+ .+.+|++
T Consensus 149 ~~~~l~~~~~ea~~~ai~~~kpG~~~~di~~a~~~~~~~~G~~~-~~~~~GHG--IGl~~hE~P~i~~~~~~~~~~~Le~ 225 (286)
T PRK07281 149 EVKNLMDVTKEAMYRGIEQAVVGNRIGDIGAAIQEYAESRGYGV-VRDLVGHG--VGPTMHEEPMVPNYGTAGRGLRLRE 225 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc-CCCeeeee--CCCccCCCCcCCCcccCCCCCEECC
Confidence 46788999999999999999999999999999999988876532 11222221 11111121 1221 12 3568999
Q ss_pred CCEEEEEeecee
Q 018857 226 GDIVNIDVTVYY 237 (349)
Q Consensus 226 GDiv~iD~g~~~ 237 (349)
|.++.|+.+.+.
T Consensus 226 GMV~tiEPgiy~ 237 (286)
T PRK07281 226 GMVLTIEPMINT 237 (286)
T ss_pred CCEEEECCeeEc
Confidence 999999999875
No 60
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=96.38 E-value=0.021 Score=54.46 Aligned_cols=82 Identities=16% Similarity=0.141 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHcCCCcccCcccccCCCcCccCCCcCCCC---CCCCcccCc
Q 018857 255 EASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHYS---SLYHAFQPH 331 (349)
Q Consensus 255 ~~~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~~~~~~~~GHgIG~~~he~P~i~~~~---~~~~~Le~G 331 (349)
+..+++.+.+.++++++++.++||++..||...+++.+.+.|... ++.+++...+ .+.||. +++.+|++|
T Consensus 2 ~~~r~Aa~I~~~a~~~~~~~i~pG~te~ei~~~~~~~i~~~G~~~-----afp~~is~n~--~~~H~~p~~~d~~~l~~G 74 (291)
T cd01088 2 EKYREAGEIHRQVRKYAQSLIKPGMTLLEIAEFVENRIRELGAGP-----AFPVNLSINE--CAAHYTPNAGDDTVLKEG 74 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHcCCCC-----CCCceeccCC--EeeCCCCCCCCCcccCCC
Confidence 457889999999999999999999999999999999999998532 2223322222 223332 345789999
Q ss_pred e-EEEecceEEcC
Q 018857 332 I-FYIQKSFYFMD 343 (349)
Q Consensus 332 M-ftIEPgly~~~ 343 (349)
+ +.|..|..+.+
T Consensus 75 DvV~iD~G~~~dG 87 (291)
T cd01088 75 DVVKLDFGAHVDG 87 (291)
T ss_pred CEEEEEEEEEECC
Confidence 8 88888876643
No 61
>PRK08671 methionine aminopeptidase; Provisional
Probab=96.20 E-value=0.086 Score=50.30 Aligned_cols=97 Identities=26% Similarity=0.281 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCC-----Ccccc-cCCCCCCC
Q 018857 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVN-----EVICH-GIPDSRKL 223 (349)
Q Consensus 150 ~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n-----~~~~H-~~p~~r~L 223 (349)
..+++.+.+.++++++++.++||++-.||.+.+++.+.+.|..+. .+..++. .|.+ -.++. ...++.+|
T Consensus 102 ~~~~l~~a~~~a~~aai~~ikpG~~~~dv~~~i~~vi~~~G~~~~-~~~~GHg----iG~~~~he~p~ip~~~~~~~~~l 176 (291)
T PRK08671 102 KYEDLVEASEEALEAAIEVVRPGVSVGEIGRVIEETIRSYGFKPI-RNLTGHG----LERYELHAGPSIPNYDEGGGVKL 176 (291)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccc-CCCcccC----cCCCcccCCCccCccCCCCCcee
Confidence 456788888899999999999999999999999999999987653 2222221 1211 01111 11246789
Q ss_pred CCCCEEEEEeece-eCcEEeceeceEeeC
Q 018857 224 EDGDIVNIDVTVY-YKGVHGDLNETYFVG 251 (349)
Q Consensus 224 ~~GDiv~iD~g~~-~~GY~~D~~RT~~vG 251 (349)
++|+++.|+.... ..|+..|-.+|-...
T Consensus 177 e~GmV~aIEp~~t~G~G~v~~~~~~~iy~ 205 (291)
T PRK08671 177 EEGDVYAIEPFATDGEGKVVEGPEVEIYS 205 (291)
T ss_pred CCCCEEEEcceEECCCCeEecCCceEEEe
Confidence 9999999997654 377877777776664
No 62
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=96.20 E-value=0.042 Score=50.30 Aligned_cols=99 Identities=17% Similarity=0.253 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCC-CCCCCCCceeeecCCCcccccCCCCCCCCCCC
Q 018857 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNYHFFPKSCCTSVNEVICHGIPDSRKLEDGD 227 (349)
Q Consensus 149 e~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~-l~~~~fp~~v~~g~n~~~~H~~p~~r~L~~GD 227 (349)
...+++.+.+.+++++++++++||++-.||+..+.+.+.+.|+.+.. +..+.+...+.++.+.. .-..+|++|.
T Consensus 120 ~~~~~~~~~~~ea~~~~~~~~kpG~~~~dv~~a~~~~~~~~G~~~~~~~~~h~~g~~~~~~~~~~-----~~~~~l~~gm 194 (228)
T cd01089 120 GKKADVIAAAHYALEAALRLLRPGNQNSDITEAIQKVIVDYGCTPVEGVLSHQLKRVVSSGEGKA-----KLVECVKHGL 194 (228)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHcCCEEecCccccCcCceEecCCCCc-----cchhhccCCc
Confidence 46778888899999999999999999999999999999999853211 00011111233332211 0156799999
Q ss_pred EEEEEeeceeCc-EEeceeceEeeCC
Q 018857 228 IVNIDVTVYYKG-VHGDLNETYFVGN 252 (349)
Q Consensus 228 iv~iD~g~~~~G-Y~~D~~RT~~vG~ 252 (349)
++.++...+..| +-.-+..|+.|.+
T Consensus 195 vf~~ep~~~~~g~~~~~~~~Tv~vt~ 220 (228)
T cd01089 195 LFPYPVLYEKEGEVVAQFKLTVLLTP 220 (228)
T ss_pred ccccceeEccCCCeEEEEEEEEEEcC
Confidence 999999998865 7889999999964
No 63
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains proteins that belong to MEROPS peptidase family M24 (clan MG), which share a common structural-fold, the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. The entry also contains proteins that have lost catalytic activity, for example Spt16, which is a component of the FACT complex. The crystal structure of the N-terminal domain of Spt16, determined to 2.1A, reveals an aminopeptidase P fold whose enzymatic activity has been lost. This fold binds directly to histones H3-H4 through a interaction with their globular core domains, as well as with their N-terminal tails []. The FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p (P32558 from SWISSPROT, IPR013953 from INTERPRO) and Pob3p (Q04636 from SWISSPROT, IPR000969 from INTERPRO). The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, , ]. ; GO: 0009987 cellular process; PDB: 4A6V_B 4A6W_A 3CTZ_A 3IG4_B 2B3H_A 2NQ6_A 2NQ7_A 2GZ5_A 2G6P_A 2B3L_A ....
Probab=96.12 E-value=0.038 Score=49.37 Aligned_cols=96 Identities=28% Similarity=0.318 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCC-CCCCCCCCCCceeeecCC--Cccccc--CCCCCCCCC
Q 018857 151 MRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGY-PSPLNYHFFPKSCCTSVN--EVICHG--IPDSRKLED 225 (349)
Q Consensus 151 ~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~-ps~l~~~~fp~~v~~g~n--~~~~H~--~p~~r~L~~ 225 (349)
.|++.+.+.++++.+++.++||+|-.||.+.+++.+.+.|.. +.+ . .+. -..|.. +..+.- .-++.+|++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~pG~~~~~v~~~~~~~~~~~g~~~~~~-~--~~G--H~iG~~~~~~~P~i~~~~~~~~l~~ 178 (207)
T PF00557_consen 104 QRRAYEAAREALEAAIEALRPGVTGSDVYEAVREVLEEYGLEEPYP-H--GLG--HGIGLEFHEPGPNIARPGDDTVLEP 178 (207)
T ss_dssp HHHHHHHHHHHHHHHHHH-STTSBHHHHHHHHHHHHHHTTEGEEBT-S--SSE--EEESSSSSEEEEEESSTTTSSB--T
T ss_pred ccchhhhhHHHHHhHhhhcccccccchhhHHHHHHHHhhcccceee-e--ccc--ccccccccccceeeecccccceecC
Confidence 788888889999999999999999999999999999999862 211 1 111 122321 111221 125789999
Q ss_pred CCEEEEEeece-eCcE-EeceeceEeeC
Q 018857 226 GDIVNIDVTVY-YKGV-HGDLNETYFVG 251 (349)
Q Consensus 226 GDiv~iD~g~~-~~GY-~~D~~RT~~vG 251 (349)
|.++.++.+.. ..|. -.-+..|++|.
T Consensus 179 gmv~~iep~~~~~~~~~g~~~ed~v~Vt 206 (207)
T PF00557_consen 179 GMVFAIEPGLYFIPGWGGVRFEDTVLVT 206 (207)
T ss_dssp TBEEEEEEEEEEETTSEEEEEBEEEEEE
T ss_pred CCceeEeeeEEccCCCcEEEEEEEEEEC
Confidence 99999999776 3333 56666677663
No 64
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.035 Score=52.46 Aligned_cols=89 Identities=20% Similarity=0.256 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHcCC-CcccCcccc--cCCCcCccCCCcCCCCCCCCcccCce
Q 018857 256 ASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGF-SVVKSYCGH--GIGELFHCAPNIPHYSSLYHAFQPHI 332 (349)
Q Consensus 256 ~~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~-~~~~~~~GH--gIG~~~he~P~i~~~~~~~~~Le~GM 332 (349)
.++...+.++++++.|..++|||++..||++++.+..-+.|. +-..+|-|. ++-..+.| .|-|.--+.+.||.|-
T Consensus 124 ~mR~ac~LarevLd~Aa~~v~PgvTTdEiD~~VH~a~Ierg~YPSPLnYy~FPKS~CTSVNE--viCHGIPD~RpLedGD 201 (369)
T KOG2738|consen 124 GMRKACRLAREVLDYAATLVRPGVTTDEIDRAVHNAIIERGAYPSPLNYYGFPKSVCTSVNE--VICHGIPDSRPLEDGD 201 (369)
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHhcCCcCCCcccCCCchhhhcchhh--eeecCCCCcCcCCCCC
Confidence 456777888999999999999999999999999998888764 322222111 11111111 1222223567899996
Q ss_pred -EEEecceEEcCC-Cc
Q 018857 333 -FYIQKSFYFMDN-GQ 346 (349)
Q Consensus 333 -ftIEPgly~~~~-G~ 346 (349)
+.|--++|..+. |+
T Consensus 202 IvNiDVtvY~~GyHGD 217 (369)
T KOG2738|consen 202 IVNIDVTVYLNGYHGD 217 (369)
T ss_pred EEeEEEEEEeccccCc
Confidence 999999998775 44
No 65
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=95.92 E-value=0.079 Score=52.38 Aligned_cols=101 Identities=27% Similarity=0.258 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceee--ecCCCcccccCC-CCCCCCCC
Q 018857 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCC--TSVNEVICHGIP-DSRKLEDG 226 (349)
Q Consensus 150 ~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~--~g~n~~~~H~~p-~~r~L~~G 226 (349)
.+|+...+..++.++++++++||++-.||++..++.+.+.|.-...... ++-.+. ..+.+......+ ++.+|++|
T Consensus 263 ~~~~iy~~V~~aq~aa~~~~rpG~~~~~vd~~ar~~i~~~g~~~~~~h~--~GHgvG~~l~vhE~p~~~~~~~~~~L~~G 340 (384)
T COG0006 263 EQREIYEAVLEAQEAAIAAIRPGVTGGEVDAAARQVLEKAGYGLYFLHG--TGHGVGFVLDVHEHPQYLSPGSDTTLEPG 340 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhcCCcccccCC--ccccCCCCcccCcCccccCCCCCccccCC
Confidence 3457778899999999999999999999999999999996543321111 111111 111111101112 47799999
Q ss_pred CEEEEEeecee-CcEEeceeceEeeCC
Q 018857 227 DIVNIDVTVYY-KGVHGDLNETYFVGN 252 (349)
Q Consensus 227 Div~iD~g~~~-~GY~~D~~RT~~vG~ 252 (349)
.++.++.+.++ +.+-.-+..+++|.+
T Consensus 341 Mv~t~Epg~y~~g~~GirIEd~vlVte 367 (384)
T COG0006 341 MVFSIEPGIYIPGGGGVRIEDTVLVTE 367 (384)
T ss_pred cEEEeccccccCCCceEEEEEEEEEcC
Confidence 99999999777 568889999999965
No 66
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=95.50 E-value=0.1 Score=49.95 Aligned_cols=98 Identities=26% Similarity=0.261 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCce--eeecCCCccccc-CCCCCCCCCCC
Q 018857 151 MRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKS--CCTSVNEVICHG-IPDSRKLEDGD 227 (349)
Q Consensus 151 ~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~--v~~g~n~~~~H~-~p~~r~L~~GD 227 (349)
.+++.+.+.++++++++.++||++-.||.+.+++.+.+.|..+. .+..++..- ..-+. -.++.. ..++.+|++|+
T Consensus 106 ~~~l~~a~~~A~~aai~~~kPGv~~~dV~~ai~~vi~~~G~~~i-~~~~GHgig~~~~h~g-~~ip~i~~~~~~~le~Gm 183 (295)
T TIGR00501 106 YDNLVKAAKDALYTAIKEIRAGVRVGEIGKAIQEVIESYGVKPI-SNLTGHSMAPYRLHGG-KSIPNVKERDTTKLEEGD 183 (295)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCeee-cCCCCcceecccccCC-CccCeecCCCCCEeCCCC
Confidence 47788888999999999999999999999999999999987652 233232210 00000 001111 12467899999
Q ss_pred EEEEEeecee-CcEEeceeceEee
Q 018857 228 IVNIDVTVYY-KGVHGDLNETYFV 250 (349)
Q Consensus 228 iv~iD~g~~~-~GY~~D~~RT~~v 250 (349)
++.|+....- .|+..|..+|-+.
T Consensus 184 V~aIEP~~~~G~G~v~~~~~~~iy 207 (295)
T TIGR00501 184 VVAIEPFATDGVGYVTDGGEVSIY 207 (295)
T ss_pred EEEEceeEECCcCeEecCCCeEEE
Confidence 9999975443 6777777665544
No 67
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=95.50 E-value=0.11 Score=51.58 Aligned_cols=96 Identities=19% Similarity=0.340 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCC-CCCCCCCceeeecCCCcccccCC------CCCC
Q 018857 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNYHFFPKSCCTSVNEVICHGIP------DSRK 222 (349)
Q Consensus 150 ~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~-l~~~~fp~~v~~g~n~~~~H~~p------~~r~ 222 (349)
..+++...+.+|++++++.++||++-.||..++++.+.+.|+.+.. +..+++...+--|...++.+..+ ++..
T Consensus 139 ~~~~l~~aa~~A~~aai~~vkPG~~~~dI~~ai~~v~~~~G~~~v~~~~gH~igr~~~~g~~~Ii~~~~~~~~~~~~~~~ 218 (389)
T TIGR00495 139 RKADVIAAAHLAAEAALRLVKPGNTNTQVTEAINKVAHSYGCTPVEGMLSHQLKQHVIDGEKVIISNPSDSQKKDHDTAE 218 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHcCCeecCCceeecccceeccCCCeeeecCCccccCCCCCCE
Confidence 4566777788899999999999999999999999999999976542 22222222222222222344322 2457
Q ss_pred CCCCCEEEEEeecee-CcEEecee
Q 018857 223 LEDGDIVNIDVTVYY-KGVHGDLN 245 (349)
Q Consensus 223 L~~GDiv~iD~g~~~-~GY~~D~~ 245 (349)
|++|+++.||+...- .|+.-+..
T Consensus 219 le~gev~aIEp~vs~G~g~v~~~~ 242 (389)
T TIGR00495 219 FEENEVYAVDILVSTGEGKAKDAD 242 (389)
T ss_pred ecCCCEEEEeeeecCCCceEEECC
Confidence 999999999987664 56665554
No 68
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=94.96 E-value=0.28 Score=45.94 Aligned_cols=96 Identities=17% Similarity=0.127 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCcccccCC-C-CCCCCCC
Q 018857 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIP-D-SRKLEDG 226 (349)
Q Consensus 149 e~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~H~~p-~-~r~L~~G 226 (349)
+..++.++.+.++|..+.+.++||++..||.++++..+.++|..+. -+|.+..---..=....++|+.. . ..+|++|
T Consensus 120 ~~~~~L~~~t~eal~~~I~~vkpG~~l~~Ig~aIq~~~~~~G~~vV-r~~~GHgig~~~He~p~ip~y~~~~~~~~l~~G 198 (255)
T COG0024 120 EDAKRLLEATKEALYAGIEAVKPGARLGDIGRAIQEYAESRGFSVV-RNLTGHGIGRELHEEPSIPNYGKDGTGVRLKEG 198 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCEEe-ecccCCccCcccCCCCeeccccCCCCCcccCCC
Confidence 4667788889999999999999999999999999999998886543 22222110000111123455322 2 3589999
Q ss_pred CEEEEEeeceeC-cEEecee
Q 018857 227 DIVNIDVTVYYK-GVHGDLN 245 (349)
Q Consensus 227 Div~iD~g~~~~-GY~~D~~ 245 (349)
+++.|+--+.-+ ++..+..
T Consensus 199 mv~aIEPmi~~G~~~~~~~~ 218 (255)
T COG0024 199 MVFAIEPMINTGSGEVVEGP 218 (255)
T ss_pred CEEEEeeEEEcCCCceEecC
Confidence 999998665543 4443333
No 69
>PRK10879 proline aminopeptidase P II; Provisional
Probab=94.80 E-value=0.33 Score=49.08 Aligned_cols=101 Identities=23% Similarity=0.315 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHH----HcCCCCCC-------CCC-CCCCcee----eecCCCccc
Q 018857 151 MRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATI----TAGGYPSP-------LNY-HFFPKSC----CTSVNEVIC 214 (349)
Q Consensus 151 ~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~----~~g~~ps~-------l~~-~~fp~~v----~~g~n~~~~ 214 (349)
.|++..++.++.++++++++||++-.+|...+.+.+. +.|.-+.. -.+ ..|+..+ .....+. +
T Consensus 284 q~~~y~~vl~a~~aai~~~kpG~~~~~v~~~~~~~~~~~l~~~Gl~~~~~~~~~~~~~~~~~~~Hg~GH~iGldvHd~-~ 362 (438)
T PRK10879 284 QREIYDIVLESLETSLRLYRPGTSIREVTGEVVRIMVSGLVKLGILKGDVDQLIAENAHRPFFMHGLSHWLGLDVHDV-G 362 (438)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHhCCcCCCHHHHHHhccCccccCCCCccccCcCcCcC-C
Confidence 4667778888999999999999999999888765443 33321100 000 0122221 1111111 1
Q ss_pred ccCC-CCCCCCCCCEEEEEeeceeC----------cEEeceeceEeeCC
Q 018857 215 HGIP-DSRKLEDGDIVNIDVTVYYK----------GVHGDLNETYFVGN 252 (349)
Q Consensus 215 H~~p-~~r~L~~GDiv~iD~g~~~~----------GY~~D~~RT~~vG~ 252 (349)
+..+ ++++|++|.++.|+.+.+.. |+..-+..|++|.+
T Consensus 363 ~~~~~~~~~L~~GmV~tvEPgiY~~~~~~~~~~~~~~GiRiED~VlVT~ 411 (438)
T PRK10879 363 VYGQDRSRILEPGMVLTVEPGLYIAPDADVPEQYRGIGIRIEDDIVITE 411 (438)
T ss_pred CcCCCCCCcCCCCCEEEECCEEEECCCcCcccccCccEEEeccEEEECC
Confidence 1112 46799999999999998863 56677889999853
No 70
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=94.04 E-value=0.37 Score=48.94 Aligned_cols=99 Identities=14% Similarity=0.215 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCC-----ceeeecCCCccccc---CC---
Q 018857 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFP-----KSCCTSVNEVICHG---IP--- 218 (349)
Q Consensus 150 ~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp-----~~v~~g~n~~~~H~---~p--- 218 (349)
..+++..++.+|+++++++++||++-.||++++++.+.+.|..-. .-.|| ..+.=|..-...|. +|
T Consensus 264 ~~~~L~eAv~eA~~aaI~~~kpGv~~~dI~~AIqevies~G~e~~---Gk~f~~k~I~nltGHgIG~y~iHe~k~iP~v~ 340 (470)
T PTZ00053 264 KYDPLLQATKDATNTGIKEAGIDVRLSDIGAAIQEVIESYEVEIK---GKTYPIKSIRNLNGHSIGPYIIHGGKSVPIVK 340 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCccc---CcccccccccCCcccCCCCccccCCCcCCeeC
Confidence 466788888999999999999999999999999999999885200 00010 00110111112333 22
Q ss_pred --CCCCCCCCCEEEEEeece-eCcEEeceeceEeeC
Q 018857 219 --DSRKLEDGDIVNIDVTVY-YKGVHGDLNETYFVG 251 (349)
Q Consensus 219 --~~r~L~~GDiv~iD~g~~-~~GY~~D~~RT~~vG 251 (349)
+..+|++|+++.|+..+. -.||..|-.++-...
T Consensus 341 ~~~~~~LeeGmVfaIEPf~stG~G~v~~~~~~siY~ 376 (470)
T PTZ00053 341 GGENTRMEEGELFAIETFASTGRGYVNEDLECSHYM 376 (470)
T ss_pred CCCCCEecCCCEEEEcceeeCCCCeEecCCCceeee
Confidence 356899999999997655 488888866665553
No 71
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=92.81 E-value=0.05 Score=33.70 Aligned_cols=28 Identities=39% Similarity=1.195 Sum_probs=21.7
Q ss_pred ccccccCCccccccchhhhcCCCCCCccccChhhhh
Q 018857 13 LSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFK 48 (349)
Q Consensus 13 ~~c~~c~~~~~l~c~~c~~~~~~~~~~~fc~~~cf~ 48 (349)
..|..|++.+.-.||.|.. .+||-+|+|
T Consensus 3 ~~C~vC~~~~kY~Cp~C~~--------~~CSl~C~k 30 (30)
T PF04438_consen 3 KLCSVCGNPAKYRCPRCGA--------RYCSLACYK 30 (30)
T ss_dssp EEETSSSSEESEE-TTT----------EESSHHHHH
T ss_pred CCCccCcCCCEEECCCcCC--------ceeCcEeEC
Confidence 4688899988899998873 389999987
No 72
>cd01085 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.
Probab=92.34 E-value=2.4 Score=38.72 Aligned_cols=96 Identities=17% Similarity=0.093 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHhc-cCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceee--ecCCCc--ccccCCCCCCCCCC
Q 018857 152 RETCRIAREVLDAAARMI-RPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCC--TSVNEV--ICHGIPDSRKLEDG 226 (349)
Q Consensus 152 R~A~~ia~~~l~~~~~~i-~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~--~g~n~~--~~H~~p~~r~L~~G 226 (349)
|++..++.++..++.+.+ +||++-.+|++.+++.+.+.|.+-. ...++. +. ....+. +.+...++++|++|
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~g~~~~--h~~GHg--IG~~l~~hE~P~i~~~~~~~~~L~~G 189 (224)
T cd01085 114 KRDYTLVLKGHIALARAKFPKGTTGSQLDALARQPLWKAGLDYG--HGTGHG--VGSFLNVHEGPQSISPAPNNVPLKAG 189 (224)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCC--CCCCCC--CCCCCcCCCCCCcCCcCCCCCCcCCC
Confidence 344445566666777666 5999999999999999888775310 001111 11 111221 11011245789999
Q ss_pred CEEEEEeeceeC-cEEeceeceEeeC
Q 018857 227 DIVNIDVTVYYK-GVHGDLNETYFVG 251 (349)
Q Consensus 227 Div~iD~g~~~~-GY~~D~~RT~~vG 251 (349)
.++.|+.+.+.. .+..-+..|++|.
T Consensus 190 mvftiEP~iy~~g~~gvried~v~Vt 215 (224)
T cd01085 190 MILSNEPGYYKEGKYGIRIENLVLVV 215 (224)
T ss_pred CEEEECCEeEeCCCeEEEeeEEEEEe
Confidence 999999999874 4556688888884
No 73
>PRK13607 proline dipeptidase; Provisional
Probab=91.54 E-value=1.7 Score=44.12 Aligned_cols=88 Identities=18% Similarity=0.233 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHH----HHcCCCCC-------CCCC--CCCCce----eeecCCCccc
Q 018857 152 RETCRIAREVLDAAARMIRPGVTTDEIDRVVHEAT----ITAGGYPS-------PLNY--HFFPKS----CCTSVNEVIC 214 (349)
Q Consensus 152 R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~----~~~g~~ps-------~l~~--~~fp~~----v~~g~n~~~~ 214 (349)
++...++.++.++++++++||++-.||...+++.+ .+.|.... .-++ ..||.. +...+.+.-.
T Consensus 271 ~~ly~~v~~aq~aai~~ikPG~~~~dv~~aa~~~i~~~L~~~Gl~~g~~~~~~~~~g~~~~~f~HglGH~iGldvHd~~~ 350 (443)
T PRK13607 271 AALIKDVNKEQLALIATMKPGVSYVDLHIQMHQRIAKLLRKFQIVTGLSEEAMVEQGITSPFFPHGLGHPLGLQVHDVAG 350 (443)
T ss_pred HHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhCCCceEecCCCccCccCcccccCCC
Confidence 46777889999999999999999999998877554 33433210 0000 012222 1122222100
Q ss_pred ----------------ccCCCCCCCCCCCEEEEEeeceeCc
Q 018857 215 ----------------HGIPDSRKLEDGDIVNIDVTVYYKG 239 (349)
Q Consensus 215 ----------------H~~p~~r~L~~GDiv~iD~g~~~~G 239 (349)
....+.++|++|.++.|+-|.++.+
T Consensus 351 ~~~~~~~~~~~~~~~~~~l~~~~~L~~GmV~TvEPGiY~~~ 391 (443)
T PRK13607 351 FMQDDRGTHLAAPEKHPYLRCTRVLEPGMVLTIEPGLYFID 391 (443)
T ss_pred cccccccccccccccccccccCCcCCCCcEEEECCeeeeCh
Confidence 0112457999999999999998864
No 74
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=89.91 E-value=0.2 Score=36.10 Aligned_cols=33 Identities=24% Similarity=0.691 Sum_probs=24.3
Q ss_pred ccchhhhcCCCCCCccccChhhhhhchhHHHHhhh
Q 018857 25 QCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHL 59 (349)
Q Consensus 25 ~c~~c~~~~~~~~~~~fc~~~cf~~~w~~hk~~h~ 59 (349)
.||.|-+ .|+. +.-|||++|-+..++.+|+..+
T Consensus 5 HC~~CG~-~Ip~-~~~fCS~~C~~~~~k~qk~~~~ 37 (59)
T PF09889_consen 5 HCPVCGK-PIPP-DESFCSPKCREEYRKRQKRMRK 37 (59)
T ss_pred cCCcCCC-cCCc-chhhhCHHHHHHHHHHHHHHHH
Confidence 4666643 2322 5679999999999999998775
No 75
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=85.97 E-value=2.4 Score=35.86 Aligned_cols=29 Identities=41% Similarity=1.151 Sum_probs=22.3
Q ss_pred ccccccCC-ccccccchhhhcCCCCCCccccChhhhhh
Q 018857 13 LSCVRCGK-PAHLQCPKCMELKLPREGAAFCTQDCFKA 49 (349)
Q Consensus 13 ~~c~~c~~-~~~l~c~~c~~~~~~~~~~~fc~~~cf~~ 49 (349)
.+|.-|.+ +.+-+||.|. +| |||-.|||-
T Consensus 6 ~tC~ic~e~~~KYKCpkC~---vP-----YCSl~CfKi 35 (157)
T KOG2857|consen 6 TTCVICLESEIKYKCPKCS---VP-----YCSLPCFKI 35 (157)
T ss_pred eeehhhhcchhhccCCCCC---Cc-----cccchhhhh
Confidence 45777887 4469999997 44 999999863
No 76
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=84.71 E-value=0.55 Score=34.15 Aligned_cols=30 Identities=20% Similarity=0.459 Sum_probs=19.9
Q ss_pred cccccchhhhcCC---CCCCccccChhhhhhch
Q 018857 22 AHLQCPKCMELKL---PREGAAFCTQDCFKASW 51 (349)
Q Consensus 22 ~~l~c~~c~~~~~---~~~~~~fc~~~cf~~~w 51 (349)
.+..||+|.|.-. ...-..|||+-|-.-+-
T Consensus 5 ~~v~CP~C~k~~~w~~~~~~rPFCS~RCk~IDL 37 (62)
T PRK00418 5 ITVNCPTCGKPVEWGEISPFRPFCSKRCQLIDL 37 (62)
T ss_pred ccccCCCCCCcccccCCCCcCCcccHHHHhhhH
Confidence 3477888888642 11136799999976553
No 77
>PRK01343 zinc-binding protein; Provisional
Probab=84.01 E-value=0.57 Score=33.48 Aligned_cols=26 Identities=31% Similarity=0.774 Sum_probs=18.5
Q ss_pred cccchhhhcCCCCCCccccChhhhhhc
Q 018857 24 LQCPKCMELKLPREGAAFCTQDCFKAS 50 (349)
Q Consensus 24 l~c~~c~~~~~~~~~~~fc~~~cf~~~ 50 (349)
..||+|.|.-. .....|||+-|-.-+
T Consensus 10 ~~CP~C~k~~~-~~~rPFCS~RC~~iD 35 (57)
T PRK01343 10 RPCPECGKPST-REAYPFCSERCRDID 35 (57)
T ss_pred CcCCCCCCcCc-CCCCcccCHHHhhhh
Confidence 56777777654 235679999997765
No 78
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=80.78 E-value=6.5 Score=41.95 Aligned_cols=99 Identities=18% Similarity=0.256 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCC----C-cccccCCCCCCCC
Q 018857 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVN----E-VICHGIPDSRKLE 224 (349)
Q Consensus 150 ~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n----~-~~~H~~p~~r~L~ 224 (349)
.|.+|...--.+.++++.+++||..-.+|...+...+.+.+-.-.+ .|++.+.+|.. + .+.-..-+++.|+
T Consensus 258 emq~nY~fLl~aqe~il~~lrpG~ki~dVY~~~l~~v~k~~Pel~~----~~~k~lG~~iGlEFREssl~inaKnd~~lk 333 (960)
T KOG1189|consen 258 EMQENYEFLLAAQEEILKLLRPGTKIGDVYEKALDYVEKNKPELVP----NFTKNLGFGIGLEFRESSLVINAKNDRVLK 333 (960)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHhcCcchhh----hhhhhcccccceeeecccccccccchhhhc
Confidence 3566766677778888999999999999999999888887654321 24444333321 1 1111223579999
Q ss_pred CCCEEEEEeecee-------CcEEeceeceEeeCC
Q 018857 225 DGDIVNIDVTVYY-------KGVHGDLNETYFVGN 252 (349)
Q Consensus 225 ~GDiv~iD~g~~~-------~GY~~D~~RT~~vG~ 252 (349)
.|++++|.+|..- +-|.--++-|+.||+
T Consensus 334 ~gmvFni~lGf~nl~n~~~~~~yaL~l~DTvlv~e 368 (960)
T KOG1189|consen 334 KGMVFNISLGFSNLTNPESKNSYALLLSDTVLVGE 368 (960)
T ss_pred cCcEEEEeeccccccCcccccchhhhccceeeecC
Confidence 9999999988543 457777999999985
No 79
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.19 E-value=1.1 Score=32.69 Aligned_cols=13 Identities=23% Similarity=0.552 Sum_probs=10.0
Q ss_pred CccccChhhhhhc
Q 018857 38 GAAFCTQDCFKAS 50 (349)
Q Consensus 38 ~~~fc~~~cf~~~ 50 (349)
...|||+-|.-=+
T Consensus 25 frPFCSkRCklID 37 (65)
T COG3024 25 FRPFCSKRCKLID 37 (65)
T ss_pred cCcchhHhhhhcc
Confidence 4679999997644
No 80
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=77.71 E-value=0.64 Score=31.52 Aligned_cols=37 Identities=30% Similarity=0.672 Sum_probs=27.1
Q ss_pred cccccCCccc---cccchhhhcCCCCCCccccChhhhhhchhHHHHhh
Q 018857 14 SCVRCGKPAH---LQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVH 58 (349)
Q Consensus 14 ~c~~c~~~~~---l~c~~c~~~~~~~~~~~fc~~~cf~~~w~~hk~~h 58 (349)
.|.+|+++.. .+|-.|..-.| -++||...+..|+.-|
T Consensus 2 ~C~~C~~~i~g~r~~C~~C~d~dL--------C~~Cf~~~~~~H~~~H 41 (46)
T cd02249 2 SCDGCLKPIVGVRYHCLVCEDFDL--------CSSCYAKGKKGHPPDH 41 (46)
T ss_pred CCcCCCCCCcCCEEECCCCCCCcC--------HHHHHCcCcCCCCCCC
Confidence 5888988665 67888875443 6899999876666555
No 81
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=77.58 E-value=0.73 Score=32.96 Aligned_cols=27 Identities=22% Similarity=0.485 Sum_probs=13.3
Q ss_pred cccchhhhcCCC---CCCccccChhhhhhc
Q 018857 24 LQCPKCMELKLP---REGAAFCTQDCFKAS 50 (349)
Q Consensus 24 l~c~~c~~~~~~---~~~~~fc~~~cf~~~ 50 (349)
..||+|.|.-.. ..-..|||+-|-.-+
T Consensus 3 v~CP~C~k~~~~~~~n~~rPFCS~RCk~iD 32 (57)
T PF03884_consen 3 VKCPICGKPVEWSPENPFRPFCSERCKLID 32 (57)
T ss_dssp EE-TTT--EEE-SSSSS--SSSSHHHHHHH
T ss_pred ccCCCCCCeecccCCCCcCCcccHhhcccC
Confidence 356666665432 013669999996544
No 82
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=77.20 E-value=0.81 Score=46.60 Aligned_cols=39 Identities=26% Similarity=0.834 Sum_probs=29.7
Q ss_pred ccccCCccccccchhhhcCCCCCCccccChhhhhhchhHHHHhhhhcc
Q 018857 15 CVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKAK 62 (349)
Q Consensus 15 c~~c~~~~~l~c~~c~~~~~~~~~~~fc~~~cf~~~w~~hk~~h~~~~ 62 (349)
|.+|.++|-+-| |- ..-|||=+|+.++|.+|++..+...
T Consensus 530 C~nC~~EAiy~C--CW-------NTSYCsveCQQ~HW~~H~ksCrrk~ 568 (588)
T KOG3612|consen 530 CYNCLDEAIYHC--CW-------NTSYCSVECQQGHWPEHRKSCRRKK 568 (588)
T ss_pred HHhhhHHHHHHh--hc-------cccccCcchhhccchhHhhhhcccC
Confidence 777887777665 33 2337999999999999999886443
No 83
>PF02069 Metallothio_Pro: Prokaryotic metallothionein; InterPro: IPR000518 Metallothioneins (MT) are small proteins that bind heavy metals, such as zinc, copper, cadmium and nickel. They have a high content of cysteine residues that bind the metal ions through clusters of thiolate bonds [, , ]. An empirical classification into three classes was proposed by Kojima [], with class III MTs including atypical polypeptides composed of gamma-glutamylcysteinyl units. Class I and class II MTs (the proteinaceous sequences) have now been grouped into families of phylogenetically-related and thus alignable sequences. The MT superfamily is subdivided into families, subfamilies, subgroups, and isolated isoforms and alleles. The metallothionein superfamily comprises all polypeptides that resemble equine renal metallothionein in several respects [], e.g., low molecular weight; high metal content; amino acid composition with high Cys and low aromatic residue content; unique sequence with characteristic distribution of cysteines, and spectroscopic manifestations indicative of metal thiolate clusters. A MT family subsumes MTs that share particular sequence-specific features and are thought to be evolutionarily related. Fifteen MT families have been characterised, each family being identified by its number and its taxonomic range. Family 14 consists of prokaryota MTs. Its members are recognised by the sequence pattern K-C-A-C-x(2)-C-L-C.The taxonomic range of the members extends to cyanobacteria. Known characteristics are: 53 to 56 AAs; 9 conserved Cys; one conserved tyrosine residue; one conserved histidine residue; contain other unusual residues. ; GO: 0046872 metal ion binding; PDB: 1JJD_A.
Probab=72.27 E-value=1.7 Score=30.49 Aligned_cols=26 Identities=27% Similarity=0.914 Sum_probs=17.2
Q ss_pred ccchhh-----hcCCCCCCccccChhhhhhc
Q 018857 25 QCPKCM-----ELKLPREGAAFCTQDCFKAS 50 (349)
Q Consensus 25 ~c~~c~-----~~~~~~~~~~fc~~~cf~~~ 50 (349)
.||.|. +..|.+++.|||||+|-+..
T Consensus 9 aC~~C~C~V~~~~Ai~~dGk~YCS~aCA~gH 39 (52)
T PF02069_consen 9 ACPSCSCVVSEEEAIQKDGKYYCSEACANGH 39 (52)
T ss_dssp SSTT----B-TTTSEESSS-EESSHHHHHTS
T ss_pred cCCCCEeEECchHhHHhCCEeeecHHHhccC
Confidence 466665 45565678999999998875
No 84
>COG3350 Uncharacterized conserved protein [Function unknown]
Probab=70.25 E-value=1.8 Score=30.29 Aligned_cols=10 Identities=30% Similarity=0.979 Sum_probs=8.1
Q ss_pred ccccChhhhh
Q 018857 39 AAFCTQDCFK 48 (349)
Q Consensus 39 ~~fc~~~cf~ 48 (349)
=|||||+|-.
T Consensus 28 YYFcse~~~~ 37 (53)
T COG3350 28 YYFCSEECKE 37 (53)
T ss_pred EEEeCHHHHH
Confidence 5899999943
No 85
>KOG2775 consensus Metallopeptidase [General function prediction only]
Probab=66.87 E-value=29 Score=33.31 Aligned_cols=79 Identities=22% Similarity=0.265 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHH----HHHcCCCcccCcccccCCCc-CccCCCcCCCCCCCCccc
Q 018857 255 EASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRH----ATMSGFSVVKSYCGHGIGEL-FHCAPNIPHYSSLYHAFQ 329 (349)
Q Consensus 255 ~~~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~----~~~~G~~~~~~~~GHgIG~~-~he~P~i~~~~~~~~~Le 329 (349)
.+.++..++-+++...+.+.+|||++.-||-+.++.. +.+.|...- +|.-.|.. -|++-...+-++++.+|+
T Consensus 86 ~d~rraAE~HRqvR~yv~s~ikPGmtm~ei~e~iEnttR~li~e~gl~aG---i~FPtG~SlN~cAAHyTpNaGd~tVLq 162 (397)
T KOG2775|consen 86 QDLRRAAEAHRQVRKYVQSIIKPGMTMIEICETIENTTRKLILENGLNAG---IGFPTGCSLNHCAAHYTPNAGDKTVLK 162 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHhcccccc---ccCCCcccccchhhhcCCCCCCceeee
Confidence 4566777777888888999999999999988777654 445565421 33333332 244433333356778888
Q ss_pred Cce-EEEe
Q 018857 330 PHI-FYIQ 336 (349)
Q Consensus 330 ~GM-ftIE 336 (349)
..- +.|-
T Consensus 163 ydDV~KiD 170 (397)
T KOG2775|consen 163 YDDVMKID 170 (397)
T ss_pred ecceEEEe
Confidence 763 4443
No 86
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=66.23 E-value=21 Score=26.92 Aligned_cols=52 Identities=21% Similarity=0.278 Sum_probs=32.7
Q ss_pred ccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCC-cccccCCCCCCCCCCCEEEE
Q 018857 169 IRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNE-VICHGIPDSRKLEDGDIVNI 231 (349)
Q Consensus 169 i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~-~~~H~~p~~r~L~~GDiv~i 231 (349)
++.|.|-.+++..+|..+.++=.+. .-.|.+. .-....+-+.+|++||+|.|
T Consensus 21 L~~GaTV~D~a~~iH~di~~~f~~A-----------~v~g~s~~~~gq~Vgl~~~L~d~DvVeI 73 (75)
T cd01666 21 LRRGSTVEDVCNKIHKDLVKQFKYA-----------LVWGSSVKHSPQRVGLDHVLEDEDVVQI 73 (75)
T ss_pred ECCCCCHHHHHHHHHHHHHHhCCee-----------EEeccCCcCCCeECCCCCEecCCCEEEE
Confidence 4568999999999998776652221 1112111 11223456788999999986
No 87
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=60.10 E-value=2.5 Score=29.03 Aligned_cols=37 Identities=30% Similarity=0.771 Sum_probs=24.4
Q ss_pred cccccCCccc----cccchhhhcCCCCCCccccChhhhhhch--hHHHHhh
Q 018857 14 SCVRCGKPAH----LQCPKCMELKLPREGAAFCTQDCFKASW--TSHKSVH 58 (349)
Q Consensus 14 ~c~~c~~~~~----l~c~~c~~~~~~~~~~~fc~~~cf~~~w--~~hk~~h 58 (349)
.|.+|.++.. .+|..|....| .++||...= ..|+.-|
T Consensus 2 ~Cd~C~~~~~~g~r~~C~~C~d~dL--------C~~Cf~~g~~~~~H~~~H 44 (49)
T cd02335 2 HCDYCSKDITGTIRIKCAECPDFDL--------CLECFSAGAEIGKHRNDH 44 (49)
T ss_pred CCCCcCCCCCCCcEEECCCCCCcch--------hHHhhhCcCCCCCCCCCC
Confidence 4888888554 77888875443 679998762 2454444
No 88
>PF06467 zf-FCS: MYM-type Zinc finger with FCS sequence motif; InterPro: IPR010507 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. MYM-type zinc fingers were identified in MYM family proteins []. Human protein Q14202 from SWISSPROT is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1 []. Q9UBW7 from SWISSPROT is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1 []; in atypical myeloproliferative disorders it is rearranged []. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2L8E_A 2DAS_A.
Probab=59.85 E-value=5 Score=26.33 Aligned_cols=36 Identities=22% Similarity=0.496 Sum_probs=16.7
Q ss_pred ccccccCCccccccchhhhcCCCCCCccccChhhhhh
Q 018857 13 LSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKA 49 (349)
Q Consensus 13 ~~c~~c~~~~~l~c~~c~~~~~~~~~~~fc~~~cf~~ 49 (349)
..|..|++.....=-. ..+......-.|||+.|...
T Consensus 7 ~~C~~C~~~~~~~~~~-~~~~~~g~~~~FCS~~C~~~ 42 (43)
T PF06467_consen 7 KTCSYCKKYIPNKPTM-IEVQYDGKMKQFCSQSCLSS 42 (43)
T ss_dssp EE-TTT--EEECCC-----EE-TTTTSCCSSHHHHHH
T ss_pred CcCcccCCcccCCCcc-ccccccCcccChhCHHHHhh
Confidence 4577788765422101 11222112468999999864
No 89
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.10 E-value=1.8 Score=35.87 Aligned_cols=21 Identities=33% Similarity=0.877 Sum_probs=17.7
Q ss_pred ccccccccCCccccccchhhh
Q 018857 11 TSLSCVRCGKPAHLQCPKCME 31 (349)
Q Consensus 11 ~~~~c~~c~~~~~l~c~~c~~ 31 (349)
+...|+.||..+-+|||.|..
T Consensus 27 ~eafcskcgeati~qcp~csa 47 (160)
T COG4306 27 MEAFCSKCGEATITQCPICSA 47 (160)
T ss_pred HHHHHhhhchHHHhcCCccCC
Confidence 446799999998899999975
No 90
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=59.07 E-value=3.3 Score=28.51 Aligned_cols=39 Identities=31% Similarity=0.578 Sum_probs=26.8
Q ss_pred cccccCC-ccc---cccchhhhcCCCCCCccccChhhhhhchhHHHHhhh
Q 018857 14 SCVRCGK-PAH---LQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHL 59 (349)
Q Consensus 14 ~c~~c~~-~~~---l~c~~c~~~~~~~~~~~fc~~~cf~~~w~~hk~~h~ 59 (349)
.|.+|++ +.. .+|..|..- .|=-.|+||...= .||.-|.
T Consensus 2 ~Cd~C~~~pI~G~R~~C~~C~~~------d~DlC~~C~~~~~-~H~~~H~ 44 (48)
T cd02341 2 KCDSCGIEPIPGTRYHCSECDDG------DFDLCQDCVVKGE-SHQEDHW 44 (48)
T ss_pred CCCCCCCCccccceEECCCCCCC------CCccCHHHHhCcC-CCCCCCc
Confidence 4888988 655 778888742 2334679998764 6776664
No 91
>PRK04023 DNA polymerase II large subunit; Validated
Probab=59.01 E-value=5.3 Score=43.98 Aligned_cols=39 Identities=28% Similarity=0.554 Sum_probs=25.8
Q ss_pred CCCCccccccccccccCCccc-cccchhhhcCCCCCCccccCh
Q 018857 3 GGSDAAETTSLSCVRCGKPAH-LQCPKCMELKLPREGAAFCTQ 44 (349)
Q Consensus 3 ~~~~~~~~~~~~c~~c~~~~~-l~c~~c~~~~~~~~~~~fc~~ 44 (349)
+|+...+...+.|..||+... .+||.|-+.- ...+||..
T Consensus 617 ~g~~eVEVg~RfCpsCG~~t~~frCP~CG~~T---e~i~fCP~ 656 (1121)
T PRK04023 617 KGTIEVEIGRRKCPSCGKETFYRRCPFCGTHT---EPVYRCPR 656 (1121)
T ss_pred CCceeecccCccCCCCCCcCCcccCCCCCCCC---CcceeCcc
Confidence 355556666788988888765 7888887652 14556644
No 92
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=55.59 E-value=4.1 Score=27.29 Aligned_cols=34 Identities=24% Similarity=0.501 Sum_probs=23.5
Q ss_pred cccccCCccc---cccchhhhcCCCCCCccccChhhhhhchhHHHHhh
Q 018857 14 SCVRCGKPAH---LQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVH 58 (349)
Q Consensus 14 ~c~~c~~~~~---l~c~~c~~~~~~~~~~~fc~~~cf~~~w~~hk~~h 58 (349)
.|.+|+++.. .+|-.|.. |---++||... .| ..|
T Consensus 2 ~Cd~C~~~i~G~ry~C~~C~d--------~dLC~~C~~~~--~H-~~H 38 (43)
T cd02340 2 ICDGCQGPIVGVRYKCLVCPD--------YDLCESCEAKG--VH-PEH 38 (43)
T ss_pred CCCCCCCcCcCCeEECCCCCC--------ccchHHhhCcC--CC-CCC
Confidence 5888988766 67777764 33468899887 55 444
No 93
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=55.56 E-value=3.7 Score=28.30 Aligned_cols=37 Identities=30% Similarity=0.738 Sum_probs=24.8
Q ss_pred cccccCC-ccc---cccchhhhcCCCCCCccccChhhhhhch--hHHHHhh
Q 018857 14 SCVRCGK-PAH---LQCPKCMELKLPREGAAFCTQDCFKASW--TSHKSVH 58 (349)
Q Consensus 14 ~c~~c~~-~~~---l~c~~c~~~~~~~~~~~fc~~~cf~~~w--~~hk~~h 58 (349)
.|.+|.+ +.+ .+|-.|....| .++||...= ..|+..|
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~dydL--------C~~Cf~~~~~~~~H~~~H 44 (49)
T cd02345 2 SCSACRKQDISGIRFPCQVCRDYSL--------CLGCYTKGRETKRHNSLH 44 (49)
T ss_pred cCCCCCCCCceEeeEECCCCCCcCc--------hHHHHhCCCcCCCCCCCC
Confidence 5888988 665 77888865443 679998652 4455454
No 94
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=51.96 E-value=14 Score=26.26 Aligned_cols=37 Identities=22% Similarity=0.842 Sum_probs=27.2
Q ss_pred ccccCC----ccccccchhhhcCCCCCCccccChhhhhhchhHHHHhh
Q 018857 15 CVRCGK----PAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVH 58 (349)
Q Consensus 15 c~~c~~----~~~l~c~~c~~~~~~~~~~~fc~~~cf~~~w~~hk~~h 58 (349)
|.-|.+ ...+.||.| || .++||++=.+.+-..|+.+-
T Consensus 2 Cpv~~~~~~~~v~~~Cp~c---Gi----pthcS~ehw~~D~e~H~~~c 42 (55)
T PF13824_consen 2 CPVCKKDLPAHVNFECPDC---GI----PTHCSEEHWEDDYEEHRQLC 42 (55)
T ss_pred CCCCccccccccCCcCCCC---CC----cCccCHHHHHHhHHHHHHHH
Confidence 555555 555889977 46 46899988888888888755
No 95
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=51.45 E-value=7.3 Score=23.21 Aligned_cols=17 Identities=35% Similarity=0.995 Sum_probs=12.0
Q ss_pred cccccCCccc---cccchhh
Q 018857 14 SCVRCGKPAH---LQCPKCM 30 (349)
Q Consensus 14 ~c~~c~~~~~---l~c~~c~ 30 (349)
.|..|++... ..||.|-
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG 21 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCG 21 (26)
T ss_pred cCCCCcCCchhhcCcCCCCC
Confidence 5778888766 6677663
No 96
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=51.40 E-value=7.9 Score=22.83 Aligned_cols=17 Identities=35% Similarity=1.048 Sum_probs=8.8
Q ss_pred ccccccCCccc---cccchh
Q 018857 13 LSCVRCGKPAH---LQCPKC 29 (349)
Q Consensus 13 ~~c~~c~~~~~---l~c~~c 29 (349)
..|..||++.. .-||.|
T Consensus 3 ~~Cp~Cg~~~~~~~~fC~~C 22 (26)
T PF13248_consen 3 MFCPNCGAEIDPDAKFCPNC 22 (26)
T ss_pred CCCcccCCcCCcccccChhh
Confidence 45666666433 445555
No 97
>KOG2858 consensus Uncharacterized conserved protein [General function prediction only]
Probab=50.26 E-value=7.5 Score=37.84 Aligned_cols=34 Identities=29% Similarity=0.734 Sum_probs=26.5
Q ss_pred cccccccccccCCccc-cccchhhhcCCCCCCccccChhhhhh
Q 018857 8 AETTSLSCVRCGKPAH-LQCPKCMELKLPREGAAFCTQDCFKA 49 (349)
Q Consensus 8 ~~~~~~~c~~c~~~~~-l~c~~c~~~~~~~~~~~fc~~~cf~~ 49 (349)
.+.+..+|..|+++.. -.||+|+. -+||=+|-|.
T Consensus 13 ~~~~~vlCgVClknE~KYkCPRCl~--------rtCsLeCskk 47 (390)
T KOG2858|consen 13 GGLHSVLCGVCLKNEPKYKCPRCLA--------RTCSLECSKK 47 (390)
T ss_pred cccchhhhhhcccCcccccCcchhh--------hheecccccc
Confidence 3445567988999887 89999983 3799999764
No 98
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=49.56 E-value=6.3 Score=27.29 Aligned_cols=22 Identities=32% Similarity=0.991 Sum_probs=16.9
Q ss_pred ccccccccccCCccc-------cccchhh
Q 018857 9 ETTSLSCVRCGKPAH-------LQCPKCM 30 (349)
Q Consensus 9 ~~~~~~c~~c~~~~~-------l~c~~c~ 30 (349)
+++...|..||+... .+||.|-
T Consensus 3 ~~~~Y~C~~Cg~~~~~~~~~~~irCp~Cg 31 (49)
T COG1996 3 AMMEYKCARCGREVELDQETRGIRCPYCG 31 (49)
T ss_pred ceEEEEhhhcCCeeehhhccCceeCCCCC
Confidence 466778999998554 6799885
No 99
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=48.55 E-value=5.4 Score=27.59 Aligned_cols=37 Identities=38% Similarity=0.819 Sum_probs=23.5
Q ss_pred cccccCC-ccc---cccchhhhcCCCCCCccccChhhhhhc--hhHHHHhh
Q 018857 14 SCVRCGK-PAH---LQCPKCMELKLPREGAAFCTQDCFKAS--WTSHKSVH 58 (349)
Q Consensus 14 ~c~~c~~-~~~---l~c~~c~~~~~~~~~~~fc~~~cf~~~--w~~hk~~h 58 (349)
.|.+|++ +.. .+|-.|....| .|+||... =+.||.-|
T Consensus 2 ~Cd~C~~~pi~g~RykC~~C~d~DL--------C~~Cf~~g~~~~~H~~~H 44 (49)
T cd02334 2 KCNICKEFPITGFRYRCLKCFNYDL--------CQSCFFSGRTSKSHKNSH 44 (49)
T ss_pred CCCCCCCCCceeeeEECCCCCCcCc--------hHHHHhCCCcCCCCCCCC
Confidence 4888886 444 77888875444 68999654 13444444
No 100
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=48.06 E-value=5.5 Score=27.39 Aligned_cols=29 Identities=28% Similarity=0.789 Sum_probs=20.2
Q ss_pred cccccC-Cccc---cccchhhhcCCCCCCccccChhhhhhc
Q 018857 14 SCVRCG-KPAH---LQCPKCMELKLPREGAAFCTQDCFKAS 50 (349)
Q Consensus 14 ~c~~c~-~~~~---l~c~~c~~~~~~~~~~~fc~~~cf~~~ 50 (349)
.|.+|+ ++.. .+|-.|.... -.++||...
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~d~d--------lC~~Cf~~~ 34 (49)
T cd02338 2 SCDGCGKSNFTGRRYKCLICYDYD--------LCADCYDSG 34 (49)
T ss_pred CCCCCcCCCcEEeeEEeCCCCCCc--------cchhHHhCC
Confidence 488888 5555 7788776443 367999866
No 101
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=45.86 E-value=6.4 Score=26.75 Aligned_cols=35 Identities=29% Similarity=0.875 Sum_probs=23.4
Q ss_pred cccccCC-ccc---cccchhhhcCCCCCCccccChhhhhhchhHHHHhh
Q 018857 14 SCVRCGK-PAH---LQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVH 58 (349)
Q Consensus 14 ~c~~c~~-~~~---l~c~~c~~~~~~~~~~~fc~~~cf~~~w~~hk~~h 58 (349)
.|.+|+. +.. .+|-.|.... ..+.||.. +.|..-|
T Consensus 2 ~Cd~C~~~pI~G~RykC~~C~dyD--------LC~~Cf~~--~~H~~~H 40 (45)
T cd02344 2 TCDGCQMFPINGPRFKCRNCDDFD--------FCENCFKT--RKHNTRH 40 (45)
T ss_pred CCCCCCCCCCccCeEECCCCCCcc--------chHHhhCC--CCcCCCC
Confidence 4888885 444 7788887544 46889998 3454444
No 102
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=45.84 E-value=72 Score=33.81 Aligned_cols=71 Identities=18% Similarity=0.217 Sum_probs=47.2
Q ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecC--C---CcccccCCCCCCCCCCCEEEEEee
Q 018857 160 EVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSV--N---EVICHGIPDSRKLEDGDIVNIDVT 234 (349)
Q Consensus 160 ~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~--n---~~~~H~~p~~r~L~~GDiv~iD~g 234 (349)
.+-+.+...++||.+-.+|...+...+.+.+-+-.| +|-..+..+. . ...+...-++|+||.|++++|.+|
T Consensus 309 ~lQk~i~~~~rpG~~~g~iY~~~~~yi~~~~pel~p----nF~~nvG~~igiefR~s~~~~nvkn~r~lq~g~~fnis~g 384 (1001)
T COG5406 309 MLQKYILGLVRPGTDSGIIYSEAEKYISSNGPELGP----NFIYNVGLMIGIEFRSSQKPFNVKNGRVLQAGCIFNISLG 384 (1001)
T ss_pred HHHHHHHhhcCCCCCchhHHHHHHHHHHhcCCccCc----hHhhhhhhhccccccccccceeccCCceeccccEEEEeec
Confidence 344556679999999999999999999888765332 1222222221 1 112223346799999999999885
No 103
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=44.53 E-value=53 Score=20.70 Aligned_cols=34 Identities=21% Similarity=0.458 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHH
Q 018857 154 TCRIAREVLDAAARMIRPGVTTDEIDRVVHEATI 187 (349)
Q Consensus 154 A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~ 187 (349)
.|.+...++..+.+.++...|+.+|...+.+.+.
T Consensus 3 ~C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~ 36 (39)
T PF05184_consen 3 ECDICKFVVKEIEKLLKNNKTEEEIKKALEKACN 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHHSTCHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHcCccHHHHHHHHHHHHh
Confidence 4677888999999999999999999999988763
No 104
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=43.19 E-value=10 Score=25.49 Aligned_cols=21 Identities=33% Similarity=0.980 Sum_probs=14.9
Q ss_pred ccccccccCCcc-------ccccchhhh
Q 018857 11 TSLSCVRCGKPA-------HLQCPKCME 31 (349)
Q Consensus 11 ~~~~c~~c~~~~-------~l~c~~c~~ 31 (349)
+...|.+||... .+.||.|-.
T Consensus 2 ~~y~C~~CG~~~~~~~~~~~~~Cp~CG~ 29 (46)
T PRK00398 2 AEYKCARCGREVELDEYGTGVRCPYCGY 29 (46)
T ss_pred CEEECCCCCCEEEECCCCCceECCCCCC
Confidence 446799998743 378998863
No 105
>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]. Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.
Probab=41.55 E-value=13 Score=24.94 Aligned_cols=17 Identities=18% Similarity=0.692 Sum_probs=13.4
Q ss_pred CCccccChhhhhhchhH
Q 018857 37 EGAAFCTQDCFKASWTS 53 (349)
Q Consensus 37 ~~~~fc~~~cf~~~w~~ 53 (349)
+.+-|||++|-..++..
T Consensus 21 ~~~lYCSe~Cr~~D~~~ 37 (43)
T PF12855_consen 21 DGSLYCSEECRLKDQEK 37 (43)
T ss_pred CCccccCHHHHhHhhhc
Confidence 46889999998887543
No 106
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=40.54 E-value=9.9 Score=23.52 Aligned_cols=20 Identities=40% Similarity=1.017 Sum_probs=11.2
Q ss_pred cccccccCCccc-------cccchhhh
Q 018857 12 SLSCVRCGKPAH-------LQCPKCME 31 (349)
Q Consensus 12 ~~~c~~c~~~~~-------l~c~~c~~ 31 (349)
.+-|..||.++. ++||.|-.
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEESSSS-
T ss_pred CcccCcCCccccCCCCcCEeECCCCcC
Confidence 356888887554 88887753
No 107
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=40.19 E-value=8.3 Score=26.12 Aligned_cols=35 Identities=23% Similarity=0.613 Sum_probs=21.9
Q ss_pred cccccCC-ccc---cccchhhhcCCCCCCccccChhhhhhchhHHHHhh
Q 018857 14 SCVRCGK-PAH---LQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVH 58 (349)
Q Consensus 14 ~c~~c~~-~~~---l~c~~c~~~~~~~~~~~fc~~~cf~~~w~~hk~~h 58 (349)
.|.+|++ +.. -+|-.|..-. -.++||.. ..|+.-|
T Consensus 2 ~Cd~C~~~~i~G~RykC~~C~dyD--------LC~~C~~~--~~H~~~H 40 (45)
T cd02339 2 ICDTCRKQGIIGIRWKCAECPNYD--------LCTTCYHG--DKHDLEH 40 (45)
T ss_pred CCCCCCCCCcccCeEECCCCCCcc--------chHHHhCC--CCCCCCC
Confidence 4888885 332 6788776433 46889985 3454444
No 108
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=38.52 E-value=65 Score=24.44 Aligned_cols=51 Identities=27% Similarity=0.293 Sum_probs=37.0
Q ss_pred CCCCCCCCEEEEEeecee-CcEEecee------ceEeeCCCCHHHHHHHHHHHHHHHHHHHHcCCCC
Q 018857 220 SRKLEDGDIVNIDVTVYY-KGVHGDLN------ETYFVGNADEASRQLVQCTYECLEKAISIVKPGV 279 (349)
Q Consensus 220 ~r~L~~GDiv~iD~g~~~-~GY~~D~~------RT~~vG~~~~~~~~l~~~~~ea~~~ai~~~kPG~ 279 (349)
.+..++||.|.|++.++. +|-.-|-+ .+|.+|.-. ...+++.++..+++|-
T Consensus 2 ~~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~---------~i~g~e~al~~m~~Ge 59 (94)
T PF00254_consen 2 PRTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQ---------VIPGLEEALIGMKVGE 59 (94)
T ss_dssp SSSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSS---------SSHHHHHHHTTSBTTE
T ss_pred CccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCc---------cccchhhhcccccCCC
Confidence 356789999999999987 77666666 566667411 3446777888888885
No 109
>cd02343 ZZ_EF Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=37.11 E-value=9.3 Score=26.33 Aligned_cols=29 Identities=28% Similarity=0.715 Sum_probs=18.8
Q ss_pred cccccCCccc---cccchhhhcCCCCCCccccChhhhhhc
Q 018857 14 SCVRCGKPAH---LQCPKCMELKLPREGAAFCTQDCFKAS 50 (349)
Q Consensus 14 ~c~~c~~~~~---l~c~~c~~~~~~~~~~~fc~~~cf~~~ 50 (349)
.|.+|++... .+|-.|..- --.|+||...
T Consensus 2 ~CdgC~~~~~~~RykCl~C~d~--------DlC~~Cf~~g 33 (48)
T cd02343 2 SCDGCDEIAPWHRYRCLQCTDM--------DLCKTCFLGG 33 (48)
T ss_pred CCCCCCCcCCCceEECCCCCCc--------hhHHHHHhCC
Confidence 3788887544 556666543 3468898765
No 110
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=37.10 E-value=11 Score=40.80 Aligned_cols=41 Identities=29% Similarity=0.624 Sum_probs=0.0
Q ss_pred CCCccccccccccccCCccc-cccchhhhcCCCCCCccccChhhhh
Q 018857 4 GSDAAETTSLSCVRCGKPAH-LQCPKCMELKLPREGAAFCTQDCFK 48 (349)
Q Consensus 4 ~~~~~~~~~~~c~~c~~~~~-l~c~~c~~~~~~~~~~~fc~~~cf~ 48 (349)
|+...|...+.|..||+.+- ..||.|-..-. ..|+|. .|-+
T Consensus 647 g~i~vei~~r~Cp~Cg~~t~~~~Cp~CG~~T~---~~~~Cp-~C~~ 688 (900)
T PF03833_consen 647 GTIEVEIGRRRCPKCGKETFYNRCPECGSHTE---PVYVCP-DCGI 688 (900)
T ss_dssp ----------------------------------------------
T ss_pred CeeEEeeecccCcccCCcchhhcCcccCCccc---cceecc-cccc
Confidence 45677888899999999877 88998875433 467764 3433
No 111
>PF12773 DZR: Double zinc ribbon
Probab=35.60 E-value=22 Score=24.01 Aligned_cols=31 Identities=35% Similarity=0.840 Sum_probs=22.0
Q ss_pred ccccccccCCccc------cccchhhhcCCCCCCccccC
Q 018857 11 TSLSCVRCGKPAH------LQCPKCMELKLPREGAAFCT 43 (349)
Q Consensus 11 ~~~~c~~c~~~~~------l~c~~c~~~~~~~~~~~fc~ 43 (349)
..+.|..||.+.. +.||.|....-+ ...||.
T Consensus 11 ~~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~--~~~fC~ 47 (50)
T PF12773_consen 11 DAKFCPHCGTPLPPPDQSKKICPNCGAENPP--NAKFCP 47 (50)
T ss_pred cccCChhhcCChhhccCCCCCCcCCcCCCcC--CcCccC
Confidence 3567988987654 569999987433 667774
No 112
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Probab=35.20 E-value=18 Score=30.14 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=21.0
Q ss_pred ccccccccCCccccccchh--hhcCCCCCCccccChhhhhhc
Q 018857 11 TSLSCVRCGKPAHLQCPKC--MELKLPREGAAFCTQDCFKAS 50 (349)
Q Consensus 11 ~~~~c~~c~~~~~l~c~~c--~~~~~~~~~~~fc~~~cf~~~ 50 (349)
...+|.-||..+---.-+- .+-|. ..+|||..|.|..
T Consensus 3 ~~e~CsFcG~kIyPG~G~~fVR~DGk---vf~FcssKC~k~f 41 (131)
T PRK14891 3 ETRTCDYTGEEIEPGTGTMFVRKDGT---VLHFVDSKCEKNY 41 (131)
T ss_pred ceeeecCcCCcccCCCCcEEEecCCC---EEEEecHHHHHHH
Confidence 3467888988554111111 11121 4789999996554
No 113
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=35.01 E-value=21 Score=25.73 Aligned_cols=21 Identities=29% Similarity=0.708 Sum_probs=11.2
Q ss_pred cccccCCccccccchhhhcCC
Q 018857 14 SCVRCGKPAHLQCPKCMELKL 34 (349)
Q Consensus 14 ~c~~c~~~~~l~c~~c~~~~~ 34 (349)
.|.+||+..--+|.+|-|++.
T Consensus 27 ~CPnCG~~~I~RC~~CRk~~~ 47 (59)
T PRK14890 27 LCPNCGEVIIYRCEKCRKQSN 47 (59)
T ss_pred eCCCCCCeeEeechhHHhcCC
Confidence 355555543455666665553
No 114
>KOG2414 consensus Putative Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=34.98 E-value=2.2e+02 Score=28.71 Aligned_cols=113 Identities=19% Similarity=0.253 Sum_probs=69.1
Q ss_pred Eeecee--CcEEeceeceEeeC------------CC--CHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHc
Q 018857 232 DVTVYY--KGVHGDLNETYFVG------------NA--DEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMS 295 (349)
Q Consensus 232 D~g~~~--~GY~~D~~RT~~vG------------~~--~~~~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~ 295 (349)
|++-.+ .|..+|..|+.+=- .+ .-...++++.+.+.+..-++.+.-+.+.++ +.+ .+++.
T Consensus 324 DITRTWP~sGkFs~~Qr~LYeavL~vq~ecik~c~~~~g~sL~~l~~~s~~Ll~~~Lk~lGI~kt~~e--e~~--~~~kl 399 (488)
T KOG2414|consen 324 DITRTWPISGKFSDAQRDLYEAVLQVQEECIKYCKPSNGTSLSQLFERSNELLGQELKELGIRKTDRE--EMI--QAEKL 399 (488)
T ss_pred cceeccCCCCccCcHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHhCcccchHH--HHH--hhhhc
Confidence 555444 88888888876521 11 335677888888888888888877767666 222 44444
Q ss_pred CCCcccCcccccCCCcCccCCCcCCCCCCCCcccCce----------------EEEecceEEcCCCccC
Q 018857 296 GFSVVKSYCGHGIGELFHCAPNIPHYSSLYHAFQPHI----------------FYIQKSFYFMDNGQLL 348 (349)
Q Consensus 296 G~~~~~~~~GHgIG~~~he~P~i~~~~~~~~~Le~GM----------------ftIEPgly~~~~G~~v 348 (349)
-...+-|++|=-|--..+-+-.++..++--.++|||. +.||..+.+.+.|-.|
T Consensus 400 cPHhVgHyLGmDVHD~p~v~r~~pL~pg~ViTIEPGvYIP~d~d~P~~FrGIGiRIEDDV~i~edg~ev 468 (488)
T KOG2414|consen 400 CPHHVGHYLGMDVHDCPTVSRDIPLQPGMVITIEPGVYIPEDDDPPEEFRGIGIRIEDDVAIGEDGPEV 468 (488)
T ss_pred CCcccchhcCcccccCCCCCCCccCCCCceEEecCceecCccCCCchHhcCceEEeecceEeccCCcee
Confidence 4445566666555544444434443334444555544 4889999998887543
No 115
>COG4416 Com Mu-like prophage protein Com [General function prediction only]
Probab=34.85 E-value=11 Score=26.62 Aligned_cols=22 Identities=36% Similarity=1.044 Sum_probs=15.5
Q ss_pred ccccccCC---ccc------cccchhhhcCC
Q 018857 13 LSCVRCGK---PAH------LQCPKCMELKL 34 (349)
Q Consensus 13 ~~c~~c~~---~~~------l~c~~c~~~~~ 34 (349)
-.|..|+| .+. ..||.|+.++-
T Consensus 5 iRC~~CnKlLa~a~~~~yle~KCPrCK~vN~ 35 (60)
T COG4416 5 IRCAKCNKLLAEAEGQAYLEKKCPRCKEVNE 35 (60)
T ss_pred eehHHHhHHHHhcccceeeeecCCccceeee
Confidence 46888988 222 67999997654
No 116
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=33.66 E-value=2e+02 Score=28.55 Aligned_cols=56 Identities=23% Similarity=0.358 Sum_probs=35.9
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCcccccCC-CCCCCCCCCEEEEEeeceeCcEEecee----ce
Q 018857 173 VTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIP-DSRKLEDGDIVNIDVTVYYKGVHGDLN----ET 247 (349)
Q Consensus 173 vte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~H~~p-~~r~L~~GDiv~iD~g~~~~GY~~D~~----RT 247 (349)
+|+.+|+..+.+.....+-+ .+ .+++++.||.|.+|+....+|=..+-+ .+
T Consensus 120 vtde~vd~~i~~l~~~~a~~------------------------~~~~~~~~~~gD~V~v~~~~~~dg~~~~~~~~~~~~ 175 (408)
T TIGR00115 120 VTDEDVDEELEKLREQNATL------------------------VPVERRAAEKGDRVTIDFEGFIDGEAFEGGKAENFS 175 (408)
T ss_pred CCHHHHHHHHHHHHHhCCcc------------------------ccccccccCCCCEEEEEEEEEECCEECcCCCCCCeE
Confidence 56667777777666554332 11 235789999999999887666443332 36
Q ss_pred EeeCC
Q 018857 248 YFVGN 252 (349)
Q Consensus 248 ~~vG~ 252 (349)
|.+|.
T Consensus 176 ~~lg~ 180 (408)
T TIGR00115 176 LELGS 180 (408)
T ss_pred EEECC
Confidence 67773
No 117
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=33.37 E-value=19 Score=29.16 Aligned_cols=21 Identities=33% Similarity=0.846 Sum_probs=15.0
Q ss_pred cccccccCC------ccccccchhhhc
Q 018857 12 SLSCVRCGK------PAHLQCPKCMEL 32 (349)
Q Consensus 12 ~~~c~~c~~------~~~l~c~~c~~~ 32 (349)
+|+|.+||+ --...||.|-..
T Consensus 9 KR~Cp~CG~kFYDLnk~PivCP~CG~~ 35 (108)
T PF09538_consen 9 KRTCPSCGAKFYDLNKDPIVCPKCGTE 35 (108)
T ss_pred cccCCCCcchhccCCCCCccCCCCCCc
Confidence 588999986 222779988753
No 118
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=33.10 E-value=18 Score=24.33 Aligned_cols=18 Identities=28% Similarity=0.931 Sum_probs=13.0
Q ss_pred ccccccCCccc------cccchhh
Q 018857 13 LSCVRCGKPAH------LQCPKCM 30 (349)
Q Consensus 13 ~~c~~c~~~~~------l~c~~c~ 30 (349)
..|..||.+.. ++||.|-
T Consensus 3 Y~C~~Cg~~~~~~~~~~irC~~CG 26 (44)
T smart00659 3 YICGECGRENEIKSKDVVRCRECG 26 (44)
T ss_pred EECCCCCCEeecCCCCceECCCCC
Confidence 46888987544 7788775
No 119
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=33.05 E-value=21 Score=20.55 Aligned_cols=7 Identities=43% Similarity=1.293 Sum_probs=3.2
Q ss_pred ccccCCc
Q 018857 15 CVRCGKP 21 (349)
Q Consensus 15 c~~c~~~ 21 (349)
|..||++
T Consensus 2 Cp~CG~~ 8 (23)
T PF13240_consen 2 CPNCGAE 8 (23)
T ss_pred CcccCCC
Confidence 4445543
No 120
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=32.96 E-value=17 Score=26.01 Aligned_cols=23 Identities=22% Similarity=0.722 Sum_probs=15.9
Q ss_pred cccchhhhcCCCCCCccccChhhhh
Q 018857 24 LQCPKCMELKLPREGAAFCTQDCFK 48 (349)
Q Consensus 24 l~c~~c~~~~~~~~~~~fc~~~cf~ 48 (349)
..|+.|-+. || .+--|||.+|..
T Consensus 9 ~HC~VCg~a-Ip-~de~~CSe~C~e 31 (64)
T COG4068 9 RHCVVCGKA-IP-PDEQVCSEECGE 31 (64)
T ss_pred ccccccCCc-CC-CccchHHHHHHH
Confidence 457777764 43 367799999973
No 121
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=32.92 E-value=77 Score=23.80 Aligned_cols=47 Identities=15% Similarity=0.102 Sum_probs=29.6
Q ss_pred ccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCcccccCCCCCCCCCCCEEEE
Q 018857 169 IRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNI 231 (349)
Q Consensus 169 i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~H~~p~~r~L~~GDiv~i 231 (349)
++.|.|-.|++..+|..+.+.=.+. .+ .+ ......+..|++||+|.|
T Consensus 28 l~~g~tv~d~a~~IH~d~~~~F~~A----------~v-~~-----~~~vg~d~~l~d~DVv~i 74 (76)
T cd04938 28 VKKGTTVGDVARKIHGDLEKGFIEA----------VG-GR-----RRLEGKDVILGKNDILKF 74 (76)
T ss_pred EcCCCCHHHHHHHHhHHHHhccEEE----------EE-cc-----CEEECCCEEecCCCEEEE
Confidence 4558888899988887665542211 11 11 222345678999999987
No 122
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=32.10 E-value=21 Score=40.58 Aligned_cols=24 Identities=8% Similarity=0.232 Sum_probs=16.7
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHH
Q 018857 141 EIKTPDQIERMRETCRIAREVLDA 164 (349)
Q Consensus 141 ~vKs~~EIe~~R~A~~ia~~~l~~ 164 (349)
.|.+..--+.|-+.++..+..|..
T Consensus 837 iil~~~aa~yl~~va~fiDdLL~k 860 (1337)
T PRK14714 837 IVLSDGAAEYLLKVAKFVDDLLEK 860 (1337)
T ss_pred EEcchHHHHHHHHHHHHHHHHHHH
Confidence 455666667777777777777754
No 123
>PRK01490 tig trigger factor; Provisional
Probab=31.47 E-value=1.5e+02 Score=29.62 Aligned_cols=33 Identities=27% Similarity=0.306 Sum_probs=23.0
Q ss_pred CCCCCCCCEEEEEeeceeCcEEec----eeceEeeCC
Q 018857 220 SRKLEDGDIVNIDVTVYYKGVHGD----LNETYFVGN 252 (349)
Q Consensus 220 ~r~L~~GDiv~iD~g~~~~GY~~D----~~RT~~vG~ 252 (349)
+++++.||.|.||+.+..+|=.-+ -..+|.+|.
T Consensus 155 ~~~~~~gD~V~vd~~~~~~g~~~~~~~~~~~~~~lg~ 191 (435)
T PRK01490 155 ERPAENGDRVTIDFVGSIDGEEFEGGKAEDFSLELGS 191 (435)
T ss_pred cccCCCCCEEEEEEEEEECCEECcCCCCCceEEEEcC
Confidence 367899999999999887774422 224566663
No 124
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=30.50 E-value=30 Score=36.86 Aligned_cols=31 Identities=26% Similarity=0.624 Sum_probs=23.7
Q ss_pred cccccccCCccc-cccchhhhcCCCCCCccccCh
Q 018857 12 SLSCVRCGKPAH-LQCPKCMELKLPREGAAFCTQ 44 (349)
Q Consensus 12 ~~~c~~c~~~~~-l~c~~c~~~~~~~~~~~fc~~ 44 (349)
.+.|..||.+.. ..||.|-...-+ +.-||.+
T Consensus 15 akFC~~CG~~l~~~~Cp~CG~~~~~--~~~fC~~ 46 (645)
T PRK14559 15 NRFCQKCGTSLTHKPCPQCGTEVPV--DEAHCPN 46 (645)
T ss_pred CccccccCCCCCCCcCCCCCCCCCc--ccccccc
Confidence 357999999865 789999987543 6778754
No 125
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=30.35 E-value=26 Score=21.95 Aligned_cols=17 Identities=35% Similarity=1.118 Sum_probs=11.1
Q ss_pred cccccCCccc------cccchhh
Q 018857 14 SCVRCGKPAH------LQCPKCM 30 (349)
Q Consensus 14 ~c~~c~~~~~------l~c~~c~ 30 (349)
.|..||.+.. ++||.|-
T Consensus 2 ~C~~Cg~~~~~~~~~~irC~~CG 24 (32)
T PF03604_consen 2 ICGECGAEVELKPGDPIRCPECG 24 (32)
T ss_dssp BESSSSSSE-BSTSSTSSBSSSS
T ss_pred CCCcCCCeeEcCCCCcEECCcCC
Confidence 5777887544 6788774
No 126
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=30.23 E-value=70 Score=22.52 Aligned_cols=34 Identities=24% Similarity=0.507 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHH---HHH-hccCC-CcHHHHHHHHH
Q 018857 150 RMRETCRIAREVLDA---AAR-MIRPG-VTTDEIDRVVH 183 (349)
Q Consensus 150 ~~R~A~~ia~~~l~~---~~~-~i~pG-vte~Ei~~~~~ 183 (349)
.+.+|++|+.++++. +.+ .++-| +|+.|+++++.
T Consensus 10 GYe~aa~iAk~A~~~g~svre~v~~~g~lt~ee~d~ll~ 48 (55)
T PF10415_consen 10 GYEKAAEIAKEALAEGRSVREVVLEEGLLTEEELDELLD 48 (55)
T ss_dssp HHHHHHHHHHHHHHHT--HHHHHHHTTSS-HHHHHHHTS
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHcC
Confidence 678899999998866 233 33456 79999988765
No 127
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=30.02 E-value=1.2e+02 Score=22.39 Aligned_cols=42 Identities=21% Similarity=0.345 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHH
Q 018857 253 ADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATM 294 (349)
Q Consensus 253 ~~~~~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~ 294 (349)
.+.+++.+.+.+.+.++.+++.++.|.+..=+...++..++.
T Consensus 10 ~~~Rq~~~L~~a~~~l~~a~~~l~~~~~~dl~a~~L~~A~~~ 51 (73)
T PF12631_consen 10 TNARQRQLLEQALEHLEDALEALENGLPLDLVAEDLREALES 51 (73)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999999997766555555555444
No 128
>PF04945 YHS: YHS domain; InterPro: IPR007029 This short presumed domain is about 50 amino acid residues long. It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases, some phenol hydroxylases and in a set of uncharacterised membrane proteins including Q9CNI0 from SWISSPROT. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding, possibly copper ions. This domain is duplicated in some copper transporting ATPases.; PDB: 3U52_B 2INN_A 2INP_B 1T0Q_A 2RDB_A 1T0R_A 2IND_A 1T0S_A 2INC_A 3DHI_A ....
Probab=29.58 E-value=21 Score=24.00 Aligned_cols=11 Identities=27% Similarity=0.800 Sum_probs=8.7
Q ss_pred ccccChhhhhh
Q 018857 39 AAFCTQDCFKA 49 (349)
Q Consensus 39 ~~fc~~~cf~~ 49 (349)
-+|||++|-..
T Consensus 25 Y~FCS~~C~~~ 35 (47)
T PF04945_consen 25 YYFCSEGCKEK 35 (47)
T ss_dssp EEESSHHHHHH
T ss_pred EEEcCHHHHHH
Confidence 58999999544
No 129
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=29.27 E-value=95 Score=24.70 Aligned_cols=66 Identities=17% Similarity=0.156 Sum_probs=47.9
Q ss_pred EEEeeceeCcEEeceeceEeeCCCCHHHHHHHHHHHHHHHHHHHHcCCCC-------cHhHHHHHHHHHHHHcCC
Q 018857 230 NIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGV-------RFREIGEVINRHATMSGF 297 (349)
Q Consensus 230 ~iD~g~~~~GY~~D~~RT~~vG~~~~~~~~l~~~~~ea~~~ai~~~kPG~-------~~~eI~~ai~~~~~~~G~ 297 (349)
.+|+...+.+|- .+++.+.+-. ..+.++.++.+.+.....+..+--|+ +-.+..+.|.+.+++.||
T Consensus 24 V~DV~veHp~YG-~i~~~L~i~s-r~Dv~~Fi~~l~~~~~~~Ls~LT~GvH~HtI~a~~~e~l~~I~~~L~~~G~ 96 (98)
T PF02829_consen 24 VLDVIVEHPVYG-EITGNLNISS-RRDVDKFIEKLEKSKAKPLSSLTGGVHYHTIEAPDEEDLDKIEEALKKKGF 96 (98)
T ss_dssp EEEEEEEETTTE-EEEEEEEE-S-HHHHHHHHHHHHH--S--STTGGGGEEEEEEEESSHHHHHHHHHHHHHTT-
T ss_pred EEEEEEeCCCCc-EEEEEEecCC-HHHHHHHHHHHhccCCcchHHhcCCEeeEEEEECCHHHHHHHHHHHHHCCC
Confidence 458999999998 9999999953 56677777777777666777776673 456788999999999997
No 130
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=29.21 E-value=25 Score=22.51 Aligned_cols=19 Identities=26% Similarity=0.870 Sum_probs=12.2
Q ss_pred ccccccCC------------ccccccchhhh
Q 018857 13 LSCVRCGK------------PAHLQCPKCME 31 (349)
Q Consensus 13 ~~c~~c~~------------~~~l~c~~c~~ 31 (349)
-.|..|+. ...++|+.|..
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~ 33 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGH 33 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCC
Confidence 45777764 22388888864
No 131
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=29.15 E-value=20 Score=29.22 Aligned_cols=21 Identities=33% Similarity=0.815 Sum_probs=15.9
Q ss_pred cccccccCCccc-----cccchhhhc
Q 018857 12 SLSCVRCGKPAH-----LQCPKCMEL 32 (349)
Q Consensus 12 ~~~c~~c~~~~~-----l~c~~c~~~ 32 (349)
+-.|.+|+|+++ -+|..|.+.
T Consensus 69 ~V~CP~C~K~TKmLGr~D~CM~C~~p 94 (114)
T PF11023_consen 69 QVECPNCGKQTKMLGRVDACMHCKEP 94 (114)
T ss_pred eeECCCCCChHhhhchhhccCcCCCc
Confidence 346999999886 578888754
No 132
>PF04181 RPAP2_Rtr1: Rtr1/RPAP2 family; InterPro: IPR007308 This entry represents a domain found in PAP2 (RNAP II associated polypeptide) protein and the yeast Rtr1 proteins. Its function is not known however it is thought to be a zinc finger.
Probab=28.83 E-value=22 Score=26.81 Aligned_cols=12 Identities=58% Similarity=1.423 Sum_probs=10.6
Q ss_pred ccccChhhhhhc
Q 018857 39 AAFCTQDCFKAS 50 (349)
Q Consensus 39 ~~fc~~~cf~~~ 50 (349)
+-|||..||+++
T Consensus 59 ~~fCS~~C~~~s 70 (79)
T PF04181_consen 59 SKFCSKDCYKAS 70 (79)
T ss_pred cCcCCHHHHHHH
Confidence 479999999986
No 133
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.65 E-value=21 Score=23.82 Aligned_cols=34 Identities=24% Similarity=0.732 Sum_probs=18.9
Q ss_pred ccccccccccCCccc--cccchhhhcCCCCCCccccChhhhh
Q 018857 9 ETTSLSCVRCGKPAH--LQCPKCMELKLPREGAAFCTQDCFK 48 (349)
Q Consensus 9 ~~~~~~c~~c~~~~~--l~c~~c~~~~~~~~~~~fc~~~cf~ 48 (349)
+-++..|..|+++-+ ..=-.|-. ..-|||+-|-+
T Consensus 5 ~lp~K~C~~C~rpf~WRKKW~~~Wd------~VkYCS~rCR~ 40 (42)
T PF10013_consen 5 NLPSKICPVCGRPFTWRKKWARCWD------EVKYCSDRCRR 40 (42)
T ss_pred cCCCCcCcccCCcchHHHHHHHhch------hhccHHHHhcc
Confidence 344556777777665 11122222 34489998854
No 134
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=28.38 E-value=42 Score=32.22 Aligned_cols=50 Identities=16% Similarity=0.381 Sum_probs=33.6
Q ss_pred CCCccccccccccccCCccc----cccchhhhcCCCCCCccccChhhhhhchhHHHHhh
Q 018857 4 GSDAAETTSLSCVRCGKPAH----LQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVH 58 (349)
Q Consensus 4 ~~~~~~~~~~~c~~c~~~~~----l~c~~c~~~~~~~~~~~fc~~~cf~~~w~~hk~~h 58 (349)
..+..+..-..|..|..+.. ++|+-|...-.+ .|+.+|....=..+-.-|
T Consensus 235 ~~~l~~~~~~~C~~C~~p~~~~~~~~~~~~~~~~~~-----~C~~ec~~~~~~r~~e~~ 288 (308)
T COG1054 235 PIGLVEGDHTPCDNCRNPLCNLLFISCEYCEGKYCG-----CCSDECSEEPRLRYEERQ 288 (308)
T ss_pred cCcccCCCcchhhhcCCCCCHHHhhcchhhhcccCC-----CccHHHhhhhhhHHHHHH
Confidence 34444555567999999887 778888754443 799999876644443333
No 135
>PRK12495 hypothetical protein; Provisional
Probab=27.95 E-value=26 Score=32.01 Aligned_cols=27 Identities=33% Similarity=0.725 Sum_probs=20.1
Q ss_pred cccccccccccCCccc-----cccchhhhcCC
Q 018857 8 AETTSLSCVRCGKPAH-----LQCPKCMELKL 34 (349)
Q Consensus 8 ~~~~~~~c~~c~~~~~-----l~c~~c~~~~~ 34 (349)
+.|....|..||.+.. ..||.|.+..-
T Consensus 38 atmsa~hC~~CG~PIpa~pG~~~Cp~CQ~~~~ 69 (226)
T PRK12495 38 ATMTNAHCDECGDPIFRHDGQEFCPTCQQPVT 69 (226)
T ss_pred cccchhhcccccCcccCCCCeeECCCCCCccc
Confidence 3455677999999766 66999997743
No 136
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=27.93 E-value=27 Score=20.43 Aligned_cols=7 Identities=43% Similarity=1.412 Sum_probs=5.1
Q ss_pred cccchhh
Q 018857 24 LQCPKCM 30 (349)
Q Consensus 24 l~c~~c~ 30 (349)
..||.|-
T Consensus 17 f~CPnCG 23 (24)
T PF07754_consen 17 FPCPNCG 23 (24)
T ss_pred EeCCCCC
Confidence 7788774
No 137
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=27.26 E-value=29 Score=28.25 Aligned_cols=22 Identities=32% Similarity=0.768 Sum_probs=15.1
Q ss_pred ccccccCCccc-----cccchhhhcCC
Q 018857 13 LSCVRCGKPAH-----LQCPKCMELKL 34 (349)
Q Consensus 13 ~~c~~c~~~~~-----l~c~~c~~~~~ 34 (349)
..|..||.... +.||.|...++
T Consensus 71 ~~C~~Cg~~~~~~~~~~~CP~Cgs~~~ 97 (113)
T PRK12380 71 AWCWDCSQVVEIHQHDAQCPHCHGERL 97 (113)
T ss_pred EEcccCCCEEecCCcCccCcCCCCCCc
Confidence 45888987433 66999986544
No 138
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.19 E-value=17 Score=25.02 Aligned_cols=41 Identities=22% Similarity=0.553 Sum_probs=26.7
Q ss_pred CCCCCCccccccccccccCCccc--cccchhhhcCCCCCCccccChhhh
Q 018857 1 MAGGSDAAETTSLSCVRCGKPAH--LQCPKCMELKLPREGAAFCTQDCF 47 (349)
Q Consensus 1 ~~~~~~~~~~~~~~c~~c~~~~~--l~c~~c~~~~~~~~~~~fc~~~cf 47 (349)
||..-..|..++..|.-|+++-+ ..=-.|-.. .-+||.-|-
T Consensus 1 ma~~r~Ka~lp~KICpvCqRPFsWRkKW~~cWDe------VKyCSeRCr 43 (54)
T COG4338 1 MAARRPKATLPDKICPVCQRPFSWRKKWARCWDE------VKYCSERCR 43 (54)
T ss_pred CCccCcccccchhhhhhhcCchHHHHHHHHHHHH------HHHHHHHHH
Confidence 45555567777788888988876 333445443 237888885
No 139
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=26.18 E-value=31 Score=24.41 Aligned_cols=21 Identities=33% Similarity=0.860 Sum_probs=16.4
Q ss_pred ccccccccCCccc-----cccchhhh
Q 018857 11 TSLSCVRCGKPAH-----LQCPKCME 31 (349)
Q Consensus 11 ~~~~c~~c~~~~~-----l~c~~c~~ 31 (349)
....|..||++.+ .+||.|..
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~Cga 29 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGA 29 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCC
Confidence 3457999999874 88999974
No 140
>PF05142 DUF702: Domain of unknown function (DUF702) ; InterPro: IPR007818 This is a family of plant proteins of unknown function.
Probab=25.91 E-value=23 Score=30.44 Aligned_cols=16 Identities=38% Similarity=0.993 Sum_probs=12.4
Q ss_pred ccccccCCccccccch
Q 018857 13 LSCVRCGKPAHLQCPK 28 (349)
Q Consensus 13 ~~c~~c~~~~~l~c~~ 28 (349)
..|+.||++|++-|+.
T Consensus 5 ~~CqdCGNqAkk~C~~ 20 (154)
T PF05142_consen 5 ISCQDCGNQAKKDCSH 20 (154)
T ss_pred cchhhhcchhhcCCCc
Confidence 4799999999955543
No 141
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=25.90 E-value=19 Score=29.33 Aligned_cols=23 Identities=26% Similarity=0.813 Sum_probs=14.6
Q ss_pred cccccccCCccc-----cccchhhhcCC
Q 018857 12 SLSCVRCGKPAH-----LQCPKCMELKL 34 (349)
Q Consensus 12 ~~~c~~c~~~~~-----l~c~~c~~~~~ 34 (349)
...|..||+.-. ..||.|....+
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~ 97 (113)
T PF01155_consen 70 RARCRDCGHEFEPDEFDFSCPRCGSPDV 97 (113)
T ss_dssp EEEETTTS-EEECHHCCHH-SSSSSS-E
T ss_pred cEECCCCCCEEecCCCCCCCcCCcCCCc
Confidence 346989998554 77999987553
No 142
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=25.88 E-value=41 Score=34.48 Aligned_cols=69 Identities=23% Similarity=0.255 Sum_probs=44.9
Q ss_pred CCEEEEEeeceeCcEEeceeceEeeCC--------CCHHHHH--HHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHH
Q 018857 226 GDIVNIDVTVYYKGVHGDLNETYFVGN--------ADEASRQ--LVQCTYECLEKAISIVKPGVRFREIGEVINRHATM 294 (349)
Q Consensus 226 GDiv~iD~g~~~~GY~~D~~RT~~vG~--------~~~~~~~--l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~ 294 (349)
+|.-.+-+++.|.||++|+++-+++|- .-+...+ +-...-+.+-..++.++||.--.++-.+-++++.+
T Consensus 584 nD~taLvvS~aYkG~WsDLsELWFLGMQt~~G~lPLvPWLs~~AL~S~W~e~ivk~L~kVk~~tl~~nv~sAYe~~L~q 662 (698)
T KOG2611|consen 584 NDPTALVVSIAYKGYWSDLSELWFLGMQTMCGVLPLVPWLSEFALESGWAEGIVKTLKKVKIGTLPANVKSAYEDFLSQ 662 (698)
T ss_pred CCCceEEeehhhhhhhhhHHHHHHHhHHHHcCcccchhhhcHHHHhcccHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence 676667799999999999999999982 1122211 11222344555678889998766666655554443
No 143
>PF07305 DUF1454: Protein of unknown function (DUF1454); InterPro: IPR009918 This family consists of several Enterobacterial sequences of around 200 residues in length, which are often known as YiiQ proteins. The function of this family is unknown.
Probab=25.65 E-value=3.9e+02 Score=23.99 Aligned_cols=74 Identities=11% Similarity=0.108 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHcCCCcccCcccccCCCcCccCCCcCCCCCCCCcccCce-
Q 018857 254 DEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHYSSLYHAFQPHI- 332 (349)
Q Consensus 254 ~~~~~~l~~~~~ea~~~ai~~~kPG~~~~eI~~ai~~~~~~~G~~~~~~~~GHgIG~~~he~P~i~~~~~~~~~Le~GM- 332 (349)
.+|++..-..+.+-+.+.++..-|..+..+.-+.+++.+.+..-. .|.-|-+|-. -+|. .+|. +.|+
T Consensus 114 ~~e~kaar~~a~~YmaAl~r~F~Ptls~eQs~~kl~~lL~~gk~~---~yy~q~~GAi----RYVv--ad~g---ekglT 181 (200)
T PF07305_consen 114 GPEQKAARALAIEYMAALMRQFEPTLSPEQSQEKLQKLLTKGKGS---RYYSQTEGAI----RYVV--ADNG---EKGLT 181 (200)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHcCCCC---cceeeccCce----EEEE--ecCC---CceeE
Confidence 366777778888888888999999999999999999998885442 3344666632 1222 1221 4588
Q ss_pred EEEecce
Q 018857 333 FYIQKSF 339 (349)
Q Consensus 333 ftIEPgl 339 (349)
|.|||--
T Consensus 182 FAVEPIK 188 (200)
T PF07305_consen 182 FAVEPIK 188 (200)
T ss_pred EEeeeee
Confidence 9999953
No 144
>PF09506 Salt_tol_Pase: Glucosylglycerol-phosphate phosphatase (Salt_tol_Pase); InterPro: IPR012765 Proteins in this family are glucosylglycerol-phosphate phosphatases, with the gene symbol stpA (Salt Tolerance Protein A). A motif characteristic of acid phosphatases is found, but otherwise this family shows little sequence similarity to other phosphatases. This enzyme acts on the glucosylglycerol phosphate, product of glucosylglycerol phosphate synthase and immediate precursor of the osmoprotectant glucosylglycerol.
Probab=25.29 E-value=2.5e+02 Score=27.60 Aligned_cols=129 Identities=14% Similarity=0.233 Sum_probs=89.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCC----CCce--------------
Q 018857 143 KTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHF----FPKS-------------- 204 (349)
Q Consensus 143 Ks~~EIe~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~----fp~~-------------- 204 (349)
-|+.||+.+-++-..-+..+..-...+-|..++.||...++.++.+.-..|. +|... ++..
T Consensus 97 Vs~~El~FLa~vP~~m~~~L~~~l~~~~p~l~~~~i~~~~~~sVldt~~SPT-iNlN~lf~~~~~d~~~~~~LQ~~~~~l 175 (381)
T PF09506_consen 97 VSDAELAFLAAVPERMEALLKEFLPAILPELSQEEIEKLIEASVLDTRVSPT-INLNSLFDLVPDDVERQQQLQQMMQEL 175 (381)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhCcccCHHHHHHHHHHHHhcCCCCCc-cchHHHHHHhcccHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999988877765 22211 1100
Q ss_pred --------eeec-CCCcccccCCC----------CCCCCCCCEEEEEeecee-------------CcEEeceeceEeeC-
Q 018857 205 --------CCTS-VNEVICHGIPD----------SRKLEDGDIVNIDVTVYY-------------KGVHGDLNETYFVG- 251 (349)
Q Consensus 205 --------v~~g-~n~~~~H~~p~----------~r~L~~GDiv~iD~g~~~-------------~GY~~D~~RT~~vG- 251 (349)
-+-| .|....|..|+ -++-+.||+=..|+-... +-|..+-+-++++|
T Consensus 176 M~~Ll~~A~~~GL~~SFFlH~aPNLGrd~~G~E~lk~A~~~d~GTTDiQfml~GaiKEaGlL~LlN~~i~~rtG~~PlG~ 255 (381)
T PF09506_consen 176 MNELLEKAEAQGLENSFFLHYAPNLGRDANGREILKPATAGDVGTTDIQFMLRGAIKEAGLLVLLNRYIAQRTGKAPLGE 255 (381)
T ss_pred HHHHHHHHHhCCcccceEEEeCCCCCCCCCcceeecccccCCCCchhhhhhhhhhhhhcchhHHHHHHHHhhcCCCCccC
Confidence 1122 24666788774 123456777777753322 44555555556665
Q ss_pred -----CCCHHHHHHHHHHHHHHHHHH
Q 018857 252 -----NADEASRQLVQCTYECLEKAI 272 (349)
Q Consensus 252 -----~~~~~~~~l~~~~~ea~~~ai 272 (349)
+.+.....+++.+.+......
T Consensus 256 ~FNvR~AP~~h~~Ll~L~~~~i~~~~ 281 (381)
T PF09506_consen 256 DFNVRQAPKSHQELLDLCKENIPPEQ 281 (381)
T ss_pred ccccccCchhHHHHHHHHHhhCCHHH
Confidence 477788888888777665443
No 145
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=25.14 E-value=33 Score=21.79 Aligned_cols=8 Identities=38% Similarity=1.032 Sum_probs=5.7
Q ss_pred cccchhhh
Q 018857 24 LQCPKCME 31 (349)
Q Consensus 24 l~c~~c~~ 31 (349)
.+||.|..
T Consensus 26 v~C~~C~~ 33 (38)
T TIGR02098 26 VRCGKCGH 33 (38)
T ss_pred EECCCCCC
Confidence 67887764
No 146
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=25.11 E-value=34 Score=27.93 Aligned_cols=22 Identities=32% Similarity=0.895 Sum_probs=15.8
Q ss_pred ccccccCCccc-----cccchhhhcCC
Q 018857 13 LSCVRCGKPAH-----LQCPKCMELKL 34 (349)
Q Consensus 13 ~~c~~c~~~~~-----l~c~~c~~~~~ 34 (349)
..|..|++... ..||.|....+
T Consensus 71 ~~C~~Cg~~~~~~~~~~~CP~Cgs~~~ 97 (115)
T TIGR00100 71 CECEDCSEEVSPEIDLYRCPKCHGIML 97 (115)
T ss_pred EEcccCCCEEecCCcCccCcCCcCCCc
Confidence 45888988543 66999986553
No 147
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=24.80 E-value=34 Score=28.53 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=15.0
Q ss_pred cccccccCC------ccccccchhhhc
Q 018857 12 SLSCVRCGK------PAHLQCPKCMEL 32 (349)
Q Consensus 12 ~~~c~~c~~------~~~l~c~~c~~~ 32 (349)
+|+|.+||+ .-...||.|-..
T Consensus 9 Kr~Cp~cg~kFYDLnk~p~vcP~cg~~ 35 (129)
T TIGR02300 9 KRICPNTGSKFYDLNRRPAVSPYTGEQ 35 (129)
T ss_pred cccCCCcCccccccCCCCccCCCcCCc
Confidence 578999987 223778888754
No 148
>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ].
Probab=24.74 E-value=22 Score=24.76 Aligned_cols=22 Identities=27% Similarity=0.954 Sum_probs=15.2
Q ss_pred ccccccCC---------ccccccchhhhcCC
Q 018857 13 LSCVRCGK---------PAHLQCPKCMELKL 34 (349)
Q Consensus 13 ~~c~~c~~---------~~~l~c~~c~~~~~ 34 (349)
-.|..|+| ....+||.|..++.
T Consensus 5 iRC~~CnklLa~~g~~~~leIKCpRC~tiN~ 35 (51)
T PF10122_consen 5 IRCGHCNKLLAKAGEVIELEIKCPRCKTINH 35 (51)
T ss_pred eeccchhHHHhhhcCccEEEEECCCCCccce
Confidence 35777876 12278999998765
No 149
>PF03477 ATP-cone: ATP cone domain; InterPro: IPR005144 The ATP-cone is an evolutionarily mobile, ATP-binding regulatory domain which is found in a variety of proteins including ribonucleotide reductases, phosphoglycerate kinases and transcriptional regulators []. In ribonucleotide reductase protein R1 (P28903 from SWISSPROT) from Escherichia coli this domain is located at the N terminus, and is composed mostly of helices []. It forms part of the allosteric effector region and contains the general allosteric activity site in a cleft located at the tip of the N-terminal region []. This site binds either ATP (activating) or dATP (inhibitory), with the base bound in a hydrophobic pocket and the phosphates bound to basic residues. Substrate binding to this site is thought to affect enzyme activity by altering the relative positions of the two subunits of ribonucleotide reductase.; PDB: 2XO4_A 1RLR_A 7R1R_B 5R1R_A 2XO5_B 2XAW_A 2R1R_C 2XAY_B 2X0X_C 2XAZ_A ....
Probab=24.71 E-value=51 Score=25.04 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCC
Q 018857 158 AREVLDAAARMIRPGVTTDEIDRVVHEATITAGG 191 (349)
Q Consensus 158 a~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~ 191 (349)
+.++.....+..+.++|+.||...+...+.+.|.
T Consensus 41 ~~~V~~~l~~~~~~~is~~eI~~~v~~~L~~~~~ 74 (90)
T PF03477_consen 41 ASEVENKLYDSGKEEISTEEIQDIVENALMEEGF 74 (90)
T ss_dssp HHHHHTC-ST----TEEHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHhccCCCeeHHHHHHHHHHHHHcCCh
Confidence 3344433333333499999999999999997764
No 150
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=24.52 E-value=4.2e+02 Score=22.18 Aligned_cols=103 Identities=17% Similarity=0.089 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCC--cccccCC-CCCCCCCC
Q 018857 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNE--VICHGIP-DSRKLEDG 226 (349)
Q Consensus 150 ~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~--~~~H~~p-~~r~L~~G 226 (349)
..+.+|+++++++..-.+.+--.-++ +....+.+.+...... | |=+....|... ..+-.+. ++..-..+
T Consensus 14 ~~~~~c~L~~ka~~~g~rv~I~~~d~-~~a~~lD~~LW~~~~~-s------FlPH~~~~~~~~~~~PV~l~~~~~~~~~~ 85 (142)
T PRK05728 14 LEALLCELAEKALRAGWRVLVQCEDE-EQAEALDEALWTFRDE-S------FLPHGLAGEGPAAGQPVLLTWPGKRNANH 85 (142)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHHHHHhcCCCCC-c------CCCCCcCCCCCCCCCCEEEEcCCCCCCCC
Confidence 68889999999988755554444444 4556667666543221 1 21111111110 0000010 11112234
Q ss_pred CEEEEEeeceeCcEEeceeceEee-CCCCHHHHHHH
Q 018857 227 DIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQLV 261 (349)
Q Consensus 227 Div~iD~g~~~~GY~~D~~RT~~v-G~~~~~~~~l~ 261 (349)
+-|+|.+....-.+.+...|.+-+ |. +++.++..
T Consensus 86 ~~~LinL~~~~p~~~~~F~Rvieiv~~-d~~~~~~a 120 (142)
T PRK05728 86 RDLLINLDGAVPAFAAAFERVVDFVGY-DEAAKQAA 120 (142)
T ss_pred CcEEEECCCCCcchhhcccEEEEEeCC-CHHHHHHH
Confidence 556666777777777788887654 43 55555443
No 151
>TIGR02399 salt_tol_Pase glucosylglycerol 3-phosphatase. Proteins in this family are glucosylglycerol-phosphate phosphatase, with the gene symbol stpA (Salt Tolerance Protein A). A motif characteristic of acid phosphatases is found, but otherwise this family shows little sequence similarity to other phosphatases. This enzyme acts on the glucosylglycerol phosphate, product of glucosylglycerol phosphate synthase and immediate precursor of the osmoprotectant glucosylglycerol.
Probab=23.43 E-value=2.7e+02 Score=27.38 Aligned_cols=129 Identities=16% Similarity=0.239 Sum_probs=89.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCC-C---Cce--------------
Q 018857 143 KTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHF-F---PKS-------------- 204 (349)
Q Consensus 143 Ks~~EIe~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~-f---p~~-------------- 204 (349)
-|+.||+.+-++-..-+..+..-...+-|..++.||...++.++.+.-..|. +|... | +..
T Consensus 103 Vs~~El~FLa~vP~~m~~~L~~~l~~~~p~l~~~~i~~~~~~aVldt~~SPT-iNlN~lf~~v~~d~~~~~~LQ~~~~~l 181 (389)
T TIGR02399 103 VSKEEVDFLAAVPDLMRPSLEQIVKKIFPNLVQEEIQTHASKSVLDTRFSPT-INLNSLFDLVKDDSEIRKILQKSFEDL 181 (389)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhCcccCHHHHHHHHHHHHhcCCCCCc-cchHHHHHHccchHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999988877665 22111 1 100
Q ss_pred --------eeec-CCCcccccCCC---------CCCCCCCCEEEEEeecee-------------CcEEeceeceEeeC--
Q 018857 205 --------CCTS-VNEVICHGIPD---------SRKLEDGDIVNIDVTVYY-------------KGVHGDLNETYFVG-- 251 (349)
Q Consensus 205 --------v~~g-~n~~~~H~~p~---------~r~L~~GDiv~iD~g~~~-------------~GY~~D~~RT~~vG-- 251 (349)
.+-| .|....|..|+ -++-..||+=..|+-... +-|..+-+-++++|
T Consensus 182 M~~Ll~~A~~~GL~~SFFlH~aPNLG~d~G~E~lk~A~~~d~GTTDiQfml~GaiKEaGlL~LlN~~i~~rtG~~PlG~~ 261 (389)
T TIGR02399 182 MNELMYKAKTQGLENSFFLHIAPNLGSDNGNEIIKLASKGDIGTTDIQFMLKGAVKEAGVLFLLNKFIYDSTGIAPLGRN 261 (389)
T ss_pred HHHHHHHHHhCCcccceEEEeCCcCCCccccEeecccCCCCCCchhhHHHhcchhhhhhHHHHHHHHHHhccCCCCCCCC
Confidence 1122 35667788774 234456888777764332 34555555555555
Q ss_pred ----CCCHHHHHHHHHHHHHHHHHH
Q 018857 252 ----NADEASRQLVQCTYECLEKAI 272 (349)
Q Consensus 252 ----~~~~~~~~l~~~~~ea~~~ai 272 (349)
+.+..+.++++.+.+......
T Consensus 262 FNvR~AP~~h~~Ll~L~~~~i~~~~ 286 (389)
T TIGR02399 262 FNFRDAPKSHQELLNLCKKHIKPED 286 (389)
T ss_pred CccccCCccHHHHHHHHHhcCCHHH
Confidence 477788888888777665544
No 152
>PRK00420 hypothetical protein; Validated
Probab=23.34 E-value=29 Score=28.40 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=17.5
Q ss_pred ccccccccccCC------ccccccchhhhcC
Q 018857 9 ETTSLSCVRCGK------PAHLQCPKCMELK 33 (349)
Q Consensus 9 ~~~~~~c~~c~~------~~~l~c~~c~~~~ 33 (349)
.|.+..|..||- ....+||.|.+.-
T Consensus 20 ~ml~~~CP~Cg~pLf~lk~g~~~Cp~Cg~~~ 50 (112)
T PRK00420 20 KMLSKHCPVCGLPLFELKDGEVVCPVHGKVY 50 (112)
T ss_pred HHccCCCCCCCCcceecCCCceECCCCCCee
Confidence 455677988885 3447899998743
No 153
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=22.89 E-value=33 Score=24.29 Aligned_cols=11 Identities=55% Similarity=1.141 Sum_probs=8.6
Q ss_pred cccchhhhcCC
Q 018857 24 LQCPKCMELKL 34 (349)
Q Consensus 24 l~c~~c~~~~~ 34 (349)
|-||.|+++-+
T Consensus 29 lyCpKCK~Etl 39 (55)
T PF14205_consen 29 LYCPKCKQETL 39 (55)
T ss_pred ccCCCCCceEE
Confidence 77999987655
No 154
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=22.40 E-value=38 Score=37.47 Aligned_cols=36 Identities=31% Similarity=0.591 Sum_probs=27.5
Q ss_pred CCccccccccccccCCccc-cccchhhhcCCCCCCccccC
Q 018857 5 SDAAETTSLSCVRCGKPAH-LQCPKCMELKLPREGAAFCT 43 (349)
Q Consensus 5 ~~~~~~~~~~c~~c~~~~~-l~c~~c~~~~~~~~~~~fc~ 43 (349)
.-..|...+.|..||+.+- ..||.|-..-. ..++|.
T Consensus 618 ~i~vev~~RKCPkCG~yTlk~rCP~CG~~Te---~~~pc~ 654 (1095)
T TIGR00354 618 EIEVEIAIRKCPQCGKESFWLKCPVCGELTE---QLYYGK 654 (1095)
T ss_pred eeEEEEEEEECCCCCcccccccCCCCCCccc---ccccee
Confidence 3345666789999999877 89999986533 578883
No 155
>PF08394 Arc_trans_TRASH: Archaeal TRASH domain; InterPro: IPR013603 This region is found in the C terminus of a number of archaeal transcriptional regulators. It is thought to function as a metal-sensing regulatory module [].
Probab=21.73 E-value=39 Score=21.97 Aligned_cols=33 Identities=21% Similarity=0.472 Sum_probs=19.3
Q ss_pred ccccCCccccccchhhhcCCCCCCccccChhhhhhc
Q 018857 15 CVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKAS 50 (349)
Q Consensus 15 c~~c~~~~~l~c~~c~~~~~~~~~~~fc~~~cf~~~ 50 (349)
|.-||+++.-. |.=.|.+-. .-|||+..|.++.
T Consensus 1 Cd~CG~~I~~e-P~~~k~~~~--~y~fCC~tC~~~f 33 (37)
T PF08394_consen 1 CDYCGGEITGE-PIVVKIGNK--VYYFCCPTCLSQF 33 (37)
T ss_pred CCccCCcccCC-EEEEEECCe--EEEEECHHHHHHH
Confidence 45577765421 333344332 5889999997653
No 156
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=21.43 E-value=2.4e+02 Score=21.17 Aligned_cols=48 Identities=13% Similarity=0.159 Sum_probs=30.0
Q ss_pred ccCCCcHHHHHHHHHHHHHHcCCCCCCCCCCCCCceeeecCCCcccccCCCCCCCCCCCEEEE
Q 018857 169 IRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNI 231 (349)
Q Consensus 169 i~pGvte~Ei~~~~~~~~~~~g~~ps~l~~~~fp~~v~~g~n~~~~H~~p~~r~L~~GDiv~i 231 (349)
++.|.|-.|.+..+|..+.+.=.+ + ..+ .| ....+-+.+|++||+|.|
T Consensus 27 l~~GaTv~D~A~~IHtdi~~~f~~-A---------i~~--k~---~~~vg~~~~L~dgDvV~I 74 (76)
T cd01669 27 LPKGSTARDLAYAIHTDIGDGFLH-A---------IDA--RT---GRRVGEDYELKHRDVIKI 74 (76)
T ss_pred ECCCCCHHHHHHHHHHHHHhccee-e---------EEe--eC---CEEeCCCcEecCCCEEEE
Confidence 356888889998888766543110 0 011 11 233455778999999986
No 157
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=21.13 E-value=1.7e+02 Score=19.35 Aligned_cols=41 Identities=15% Similarity=0.154 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHHHHHH-HHHHHHhccCCCcHHHHHHHHHH
Q 018857 144 TPDQIERMRETCRIAREV-LDAAARMIRPGVTTDEIDRVVHE 184 (349)
Q Consensus 144 s~~EIe~~R~A~~ia~~~-l~~~~~~i~pGvte~Ei~~~~~~ 184 (349)
|++|-+.+.+|.+.--.- ...+.+.+..|.|..++......
T Consensus 5 t~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~ 46 (48)
T PF00249_consen 5 TEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQN 46 (48)
T ss_dssp -HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHh
Confidence 678888888888777666 77777777778888888765543
No 158
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=20.92 E-value=48 Score=23.91 Aligned_cols=20 Identities=35% Similarity=0.878 Sum_probs=9.7
Q ss_pred ccccCCccccccchhhhcCC
Q 018857 15 CVRCGKPAHLQCPKCMELKL 34 (349)
Q Consensus 15 c~~c~~~~~l~c~~c~~~~~ 34 (349)
|.+||+..--+|-+|-|+|.
T Consensus 30 CPnCGe~~I~Rc~~CRk~g~ 49 (61)
T COG2888 30 CPNCGEVEIYRCAKCRKLGN 49 (61)
T ss_pred CCCCCceeeehhhhHHHcCC
Confidence 44444444445555555553
No 159
>PTZ00107 hexokinase; Provisional
Probab=20.88 E-value=9.1e+02 Score=24.70 Aligned_cols=80 Identities=16% Similarity=0.257 Sum_probs=50.6
Q ss_pred CCCCCCCCCCCEEEEEeecee--------Cc--EEeceeceEeeCC--C-------CH--HHHHHHHHHHHHHHHHHHHc
Q 018857 217 IPDSRKLEDGDIVNIDVTVYY--------KG--VHGDLNETYFVGN--A-------DE--ASRQLVQCTYECLEKAISIV 275 (349)
Q Consensus 217 ~p~~r~L~~GDiv~iD~g~~~--------~G--Y~~D~~RT~~vG~--~-------~~--~~~~l~~~~~ea~~~ai~~~ 275 (349)
.|+.. +.|+.+.||+|+.- .| ...-..+.+.+.+ . +. ...++++...+++...++.-
T Consensus 67 lPtG~--E~G~fLAlDlGGTN~RV~~V~L~g~~~~~~~~~~~~ip~~~~~~~~~~~~k~~t~~~lFd~IA~~i~~fl~~~ 144 (464)
T PTZ00107 67 LPTGK--EKGVYYAIDFGGTNFRAVRVSLRGGGKMERTQSKFSLPKSALLGEKGLLDKKATATDLFDHIAKSIKKMMEEN 144 (464)
T ss_pred CCCCC--ccceEEEEecCCceEEEEEEEeCCCCceeeEEEEEeCCHHHhccccccccccCCHHHHHHHHHHHHHHHHHhc
Confidence 46665 68999999998653 22 1111223343311 0 00 35578887777777776533
Q ss_pred C-------------------------------------------CCCcHhHHHHHHHHHHHHcCCC
Q 018857 276 K-------------------------------------------PGVRFREIGEVINRHATMSGFS 298 (349)
Q Consensus 276 k-------------------------------------------PG~~~~eI~~ai~~~~~~~G~~ 298 (349)
. +|+-..||.+..++.+++.|+.
T Consensus 145 ~~~~~~~~~l~lGfTFSFP~~Q~si~~g~Li~WtKGF~~~~~~~~~v~G~DV~~lL~~Al~r~~l~ 210 (464)
T PTZ00107 145 GDPEDLNKPVPVGFTFSFPCTQLSVNNAILIDWTKGFETGRATNDPVEGKDVGELLNDAFKRNNVP 210 (464)
T ss_pred cccccccccccceeEEeeeeecccCCceEEEEeccceeeccCCCCCccCchHHHHHHHHHHHcCCC
Confidence 2 5556688999999999999875
No 160
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=20.74 E-value=1.8e+02 Score=29.53 Aligned_cols=18 Identities=39% Similarity=0.464 Sum_probs=15.4
Q ss_pred CCCCCEEEEEeeceeCcE
Q 018857 223 LEDGDIVNIDVTVYYKGV 240 (349)
Q Consensus 223 L~~GDiv~iD~g~~~~GY 240 (349)
++.||.|.||+.+..+|=
T Consensus 158 a~~gD~v~IDf~g~iDg~ 175 (441)
T COG0544 158 AENGDRVTIDFEGSVDGE 175 (441)
T ss_pred cccCCEEEEEEEEEEcCe
Confidence 899999999999877654
No 161
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=20.65 E-value=45 Score=21.35 Aligned_cols=7 Identities=57% Similarity=1.597 Sum_probs=5.4
Q ss_pred cccchhh
Q 018857 24 LQCPKCM 30 (349)
Q Consensus 24 l~c~~c~ 30 (349)
++||.|.
T Consensus 26 vrC~~C~ 32 (37)
T PF13719_consen 26 VRCPKCG 32 (37)
T ss_pred EECCCCC
Confidence 7788776
No 162
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=20.50 E-value=51 Score=21.01 Aligned_cols=19 Identities=32% Similarity=0.908 Sum_probs=13.0
Q ss_pred ccccccCC----------ccccccchhhh
Q 018857 13 LSCVRCGK----------PAHLQCPKCME 31 (349)
Q Consensus 13 ~~c~~c~~----------~~~l~c~~c~~ 31 (349)
..|..||+ .....||.|-.
T Consensus 6 y~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~ 34 (41)
T smart00834 6 YRCEDCGHTFEVLQKISDDPLATCPECGG 34 (41)
T ss_pred EEcCCCCCEEEEEEecCCCCCCCCCCCCC
Confidence 35877887 22367998876
No 163
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=20.16 E-value=48 Score=26.97 Aligned_cols=22 Identities=27% Similarity=0.624 Sum_probs=14.8
Q ss_pred ccccccCCccc------cccchhhhcCC
Q 018857 13 LSCVRCGKPAH------LQCPKCMELKL 34 (349)
Q Consensus 13 ~~c~~c~~~~~------l~c~~c~~~~~ 34 (349)
..|..|++... ..||.|....+
T Consensus 71 ~~C~~Cg~~~~~~~~~~~~CP~Cgs~~~ 98 (114)
T PRK03681 71 CWCETCQQYVTLLTQRVRRCPQCHGDML 98 (114)
T ss_pred EEcccCCCeeecCCccCCcCcCcCCCCc
Confidence 45888887432 45999986543
No 164
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=20.09 E-value=5.6e+02 Score=21.96 Aligned_cols=39 Identities=3% Similarity=0.029 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHH
Q 018857 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATIT 188 (349)
Q Consensus 149 e~~R~A~~ia~~~l~~~~~~i~pGvte~Ei~~~~~~~~~~ 188 (349)
...+.+|+|+++++..-.+.+--+-++ +....+.+.+-.
T Consensus 13 ~~~~~acrL~~Ka~~~G~rv~I~~~d~-~~~~~LD~~LWt 51 (154)
T PRK06646 13 LLLKSILLLIEKCYYSDLKSVILTADA-DQQEMLNKNLWT 51 (154)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEcCCH-HHHHHHHHHhcC
Confidence 367889999999998866654444444 345566666653
Done!