BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018858
(349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 54/129 (41%), Gaps = 14/129 (10%)
Query: 170 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKG 229
G+C H + + M D I + D + V N E+ I T ++
Sbjct: 148 TGKCLRTLVGHTGGVWSSQMRDN---IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRC 204
Query: 230 SQSTSKVNI---RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG 286
K + RDA + + D G+ LH+ + GH AA CV + G+ ++SG
Sbjct: 205 MHLHEKRVVSGSRDATLRVWDIETGQCLHV---LMGHVAAVRCVQYD-----GRRVVSGA 256
Query: 287 NDKLVKVWD 295
D +VKVWD
Sbjct: 257 YDFMVKVWD 265
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 256 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 294
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 37 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 72
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D +++ D S GK L + GH C+ + GK+++SG D LV +W+
Sbjct: 235 DNTLKLWDYSKGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 291
Query: 300 QGVQ 303
+ VQ
Sbjct: 292 EIVQ 295
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 270 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 304
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 251
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D ++I D S GK L ++ GH+ C F+ + ++SG D+ V++WD
Sbjct: 108 DKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFN---PQSNLIVSGSFDESVRIWDVKTG 161
Query: 300 QGVQT 304
+ ++T
Sbjct: 162 KCLKT 166
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 256 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 304
+ ++ GH S VA+S L+S +DK +K+WD S + ++T
Sbjct: 79 FEKTISGHKLGISDVAWS---SDSNLLVSASDDKTLKIWDVSSGKCLKT 124
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 256 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 294
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 39 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 74
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D +++ D S GK L + GH C+ + GK+++SG D LV +W+
Sbjct: 237 DNTLKLWDYSKGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 293
Query: 300 QGVQ 303
+ VQ
Sbjct: 294 EIVQ 297
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 270 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 304
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 219 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 253
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D ++I D S GK L ++ GH+ C F+ + ++SG D+ V++WD
Sbjct: 110 DKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFN---PQSNLIVSGSFDESVRIWDVKTG 163
Query: 300 QGVQT 304
+ ++T
Sbjct: 164 KCLKT 168
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 256 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 304
+ ++ GH S VA+S L+S +DK +K+WD S + ++T
Sbjct: 81 FEKTISGHKLGISDVAWS---SDSNLLVSASDDKTLKIWDVSSGKCLKT 126
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 256 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 294
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 50
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D +++ D S GK L + GH C+ + GK+++SG D LV +W+
Sbjct: 213 DNTLKLWDYSKGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 269
Query: 300 QGVQ 303
+ VQ
Sbjct: 270 EIVQ 273
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 270 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 304
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 229
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D ++I D S GK L ++ GH+ C F+ + ++SG D+ V++WD
Sbjct: 86 DKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFN---PQSNLIVSGSFDESVRIWDVKTG 139
Query: 300 QGVQT 304
+ ++T
Sbjct: 140 KCLKT 144
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D ++I GK + ++ GH S VA+S L+S +DK +K+WD S
Sbjct: 44 DKLIKIWGAYDGK---FEKTISGHKLGISDVAWS---SDSNLLVSASDDKTLKIWDVSSG 97
Query: 300 QGVQT 304
+ ++T
Sbjct: 98 KCLKT 102
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 256 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 294
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 11 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 46
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D +++ D S GK L + GH C+ + GK+++SG D LV +W+
Sbjct: 209 DNTLKLWDYSKGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 265
Query: 300 QGVQ 303
+ VQ
Sbjct: 266 EIVQ 269
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 270 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 304
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 191 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 225
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D ++I D S GK L ++ GH+ C F+ + ++SG D+ V++WD
Sbjct: 82 DKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFN---PQSNLIVSGSFDESVRIWDVKTG 135
Query: 300 QGVQT 304
+ ++T
Sbjct: 136 KCLKT 140
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D ++I GK + ++ GH S VA+S L+S +DK +K+WD S
Sbjct: 40 DKLIKIWGAYDGK---FEKTISGHKLGISDVAWS---SDSNLLVSASDDKTLKIWDVSSG 93
Query: 300 QGVQT 304
+ ++T
Sbjct: 94 KCLKT 98
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 256 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 294
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 56
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D +++ D S GK L + GH C+ + GK+++SG D LV +W+
Sbjct: 219 DNTLKLWDYSKGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 275
Query: 300 QGVQ 303
+ VQ
Sbjct: 276 EIVQ 279
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 270 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 304
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D ++I D S GK L ++ GH+ C F+ + ++SG D+ V++WD
Sbjct: 92 DKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFN---PQSNLIVSGSFDESVRIWDVKTG 145
Query: 300 QGVQT 304
+ ++T
Sbjct: 146 KCLKT 150
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D ++I GK + ++ GH S VA+S L+S +DK +K+WD S
Sbjct: 50 DKLIKIWGAYDGK---FEKTISGHKLGISDVAWS---SDSNLLVSASDDKTLKIWDVSSG 103
Query: 300 QGVQT 304
+ ++T
Sbjct: 104 KCLKT 108
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 256 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 294
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 16 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 51
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D +++ D S GK L + GH C+ + GK+++SG D LV +W+
Sbjct: 214 DNTLKLWDYSKGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 270
Query: 300 QGVQ 303
+ VQ
Sbjct: 271 EIVQ 274
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 270 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 304
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 196 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 230
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D ++I D S GK L ++ GH+ C F+ + ++SG D+ V++WD
Sbjct: 87 DKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFN---PQSNLIVSGSFDESVRIWDVKTG 140
Query: 300 QGVQT 304
+ ++T
Sbjct: 141 KCLKT 145
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D ++I GK + ++ GH S VA+S L+S +DK +K+WD S
Sbjct: 45 DKLIKIWGAYDGK---FEKTISGHKLGISDVAWS---SDSNLLVSASDDKTLKIWDVSSG 98
Query: 300 QGVQT 304
+ ++T
Sbjct: 99 KCLKT 103
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 256 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 294
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 56
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D +++ D S GK L + GH C+ + GK+++SG D LV +W+
Sbjct: 219 DNTLKLWDYSKGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 275
Query: 300 QGVQ 303
+ VQ
Sbjct: 276 EIVQ 279
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 270 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 304
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D ++I D S GK L ++ GH+ C F+ + ++SG D+ V++WD
Sbjct: 92 DKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFN---PQSNLIVSGSFDESVRIWDVKTG 145
Query: 300 QGVQT 304
+ ++T
Sbjct: 146 KCLKT 150
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 256 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 304
+ ++ GH S VA+S L+S +DK +K+WD S + ++T
Sbjct: 63 FEKTISGHKLGISDVAWS---SDSNLLVSASDDKTLKIWDVSSGKCLKT 108
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 256 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 294
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 50
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D +++ D S GK L + GH C+ + GK+++SG D LV +W+
Sbjct: 213 DNTLKLWDYSKGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 269
Query: 300 QGVQ 303
+ VQ
Sbjct: 270 EIVQ 273
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 270 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 304
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 229
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D ++I GK + ++ GH S VA+S L+S +DK +K+WD S
Sbjct: 44 DKLIKIWGAYDGK---FEKTISGHKLGISDVAWS---SDSNLLVSASDDKTLKIWDVSSG 97
Query: 300 QGVQT 304
+ ++T
Sbjct: 98 KCLKT 102
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 73/193 (37%), Gaps = 19/193 (9%)
Query: 124 GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNG--NAGQCYNPAFV-- 179
G K ++ + K AGH+ SSV+F P W + Y+ F
Sbjct: 1 GTQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT 60
Query: 180 ---HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV 236
H + I D +N + V A D + + ++ S + K + + +
Sbjct: 61 ISGHKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 119
Query: 237 NI-----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLV 291
N+ D + I D GK L ++ H+ S V F+ G ++S D L
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFN---RDGSLIVSSSYDGLC 173
Query: 292 KVWDCSRFQGVQT 304
++WD + Q ++T
Sbjct: 174 RIWDTASGQCLKT 186
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 256 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 294
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 32 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 67
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D +++ D S GK L + GH C+ + GK+++SG D LV +W+
Sbjct: 230 DNTLKLWDYSKGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 286
Query: 300 QGVQ 303
+ VQ
Sbjct: 287 EIVQ 290
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 270 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 304
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 212 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 246
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 256 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 304
+ ++ GH S VA+S L+S +DK +K+WD S + ++T
Sbjct: 74 FEKTISGHKLGISDVAWS---SDSNLLVSASDDKTLKIWDVSSGKCLKT 119
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 73/193 (37%), Gaps = 19/193 (9%)
Query: 124 GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNG--NAGQCYNPAFV-- 179
G K ++ + K AGH+ SSV+F P W + Y+ F
Sbjct: 18 GTQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT 77
Query: 180 ---HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV 236
H + I D +N + V A D + + ++ S + K + + +
Sbjct: 78 ISGHKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 136
Query: 237 NI-----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLV 291
N+ D + I D GK L ++ H+ S V F+ G ++S D L
Sbjct: 137 NLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFN---RDGSLIVSSSYDGLC 190
Query: 292 KVWDCSRFQGVQT 304
++WD + Q ++T
Sbjct: 191 RIWDTASGQCLKT 203
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 256 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 294
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 56
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D +++ D S GK L + GH C+ + GK+++SG D LV +W+
Sbjct: 219 DNTLKLWDYSKGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 275
Query: 300 QGVQ 303
+ VQ
Sbjct: 276 EIVQ 279
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 270 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 304
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D ++I D S GK L ++ GH+ C F+ + ++SG D+ V++WD
Sbjct: 92 DKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFN---PQSNLIVSGSFDESVRIWDVKTG 145
Query: 300 QGVQT 304
+ ++T
Sbjct: 146 KCLKT 150
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 256 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 304
+ ++ GH S VA+S L+S +DK +K+WD S + ++T
Sbjct: 63 FEKTISGHKLGISDVAWS---SDSNLLVSASDDKTLKIWDVSSGKCLKT 108
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 256 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 294
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 20 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 55
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D +++ D S GK L + GH C+ + GK+++SG D LV +W+
Sbjct: 218 DNTLKLWDYSKGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 274
Query: 300 QGVQ 303
+ VQ
Sbjct: 275 EIVQ 278
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 270 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 304
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 200 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 234
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D ++I D S GK L ++ GH+ C F+ + ++SG D+ V++WD
Sbjct: 91 DKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFN---PQSNLIVSGSFDESVRIWDVKTG 144
Query: 300 QGVQT 304
+ ++T
Sbjct: 145 KCLKT 149
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 256 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 304
+ ++ GH S VA+S L+S +DK +K+WD S + ++T
Sbjct: 62 FEKTISGHKLGISDVAWS---SDSNLLVSASDDKTLKIWDVSSGKCLKT 107
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 256 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 294
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 14 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 49
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D +++ D S GK L + GH C+ + GK+++SG D LV +W+
Sbjct: 212 DNTLKLWDYSKGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 268
Query: 300 QGVQ 303
+ VQ
Sbjct: 269 EIVQ 272
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 270 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 304
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 194 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 228
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D ++I D S GK L ++ GH+ C F+ + ++SG D+ V++WD
Sbjct: 85 DKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFN---PQSNLIVSGSFDESVRIWDVKTG 138
Query: 300 QGVQT 304
+ ++T
Sbjct: 139 KCLKT 143
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D ++I GK + ++ GH S VA+S L+S +DK +K+WD S
Sbjct: 43 DKLIKIWGAYDGK---FEKTISGHKLGISDVAWS---SDSNLLVSASDDKTLKIWDVSSG 96
Query: 300 QGVQT 304
+ ++T
Sbjct: 97 KCLKT 101
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 256 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 294
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 53
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D +++ D S GK L + GH C+ + GK+++SG D LV +W+
Sbjct: 216 DNTLKLWDYSKGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 272
Query: 300 QGVQ 303
+ VQ
Sbjct: 273 EIVQ 276
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 270 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 304
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 232
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D ++I D S GK L ++ GH+ C F+ + ++SG D+ V++WD
Sbjct: 89 DKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFN---PQSNLIVSGSFDESVRIWDVKTG 142
Query: 300 QGVQT 304
+ ++T
Sbjct: 143 KCLKT 147
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 256 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 294
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 53
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D +++ D S GK L + GH C+ + GK+++SG D LV +W+
Sbjct: 216 DNTLKLWDYSKGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 272
Query: 300 QGVQ 303
+ VQ
Sbjct: 273 EIVQ 276
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 270 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 304
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 232
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D ++I D S GK L ++ GH+ C F+ + ++SG D+ V++WD
Sbjct: 89 DKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFN---PQSNLIVSGSFDESVRIWDVKTG 142
Query: 300 QGVQT 304
+ ++T
Sbjct: 143 KCLKT 147
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 8/131 (6%)
Query: 9 RRLRGHKATATCCIASRDRPG-FVASSGEDGCICWFDLRSKDVQLV-TDVGNG---PVTS 63
R L GHK A+ C D+ + SG+ C+ W + + + ++ +G V S
Sbjct: 151 RVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLS 210
Query: 64 LCFKSGNEDI-IYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACAD 122
L S N ++ I S V+ +D+ + + R + +Y+ ++ +IN + P
Sbjct: 211 LSINSLNANMFISGSCDTTVRLWDLRITS--RAVRTYHGHEGDINSVKFFPDGQRFGTGS 268
Query: 123 DGGDVKIIDIR 133
D G ++ D+R
Sbjct: 269 DDGTCRLFDMR 279
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 256 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 294
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 53
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D +++ D S GK L + GH C+ + GK+++SG D +V +W+
Sbjct: 216 DNTLKLWDYSKGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTK 272
Query: 300 QGVQ 303
+ VQ
Sbjct: 273 EIVQ 276
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 270 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 304
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 232
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 295
D ++I D S GK L ++ GH+ C F+ + ++SG D+ V++WD
Sbjct: 89 DKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFN---PQSNLIVSGSFDESVRIWD 138
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 256 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 304
+ ++ GH S VA+S L+S +DK +K+WD S + ++T
Sbjct: 60 FEKTISGHKLGISDVAWS---SDSNLLVSASDDKTLKIWDVSSGKCLKT 105
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 256 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 294
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 53
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D ++++ D S GK L + GH C+ + GK+++SG D +V +W+
Sbjct: 216 DNDLKLWDYSKGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTK 272
Query: 300 QGVQ 303
+ VQ
Sbjct: 273 EIVQ 276
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 270 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 304
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 198 VSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKT 232
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 295
D ++I D S GK L ++ GH+ C F+ + ++SG D+ V++WD
Sbjct: 89 DKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFN---PQSNLIVSGSFDESVRIWD 138
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 256 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 304
+ ++ GH S VA+S L+S +DK +K+WD S + ++T
Sbjct: 60 FEKTISGHKLGISDVAWS---SDSNLLVSASDDKTLKIWDVSSGKCLKT 105
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 75 YVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ 134
Y++SG ++ A+ + L + + I + +P S L A D G +KI D+ Q
Sbjct: 178 YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDV-Q 236
Query: 135 HCLYKSLRAGHSSICSSVQFIP 156
H +GH+S +V F P
Sbjct: 237 HANLAGTLSGHASWVLNVAFCP 258
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 256 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 294
L +++ GHT A S V FS GE +L + DKL+K+W
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGE---WLAASSADKLIKIW 53
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D +++ D S GK L + GH C+ + GK+++SG D LV +W+
Sbjct: 216 DNTLKLWDYSKGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 272
Query: 300 QGVQ 303
+ VQ
Sbjct: 273 EIVQ 276
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 270 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 304
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 232
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D ++I D S GK L ++ GH+ C F+ + ++SG D+ V++WD
Sbjct: 89 DKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFN---PQSNLIVSGSFDESVRIWDVKTG 142
Query: 300 QGVQT 304
+ ++T
Sbjct: 143 KCLKT 147
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 239 RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 298
+D + + D + + L + GH AA + V F KY++S D+ +KVW+ S
Sbjct: 231 KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD-----DKYIVSASGDRTIKVWNTST 285
Query: 299 FQGVQT 304
+ V+T
Sbjct: 286 CEFVRT 291
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 238 IRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS 297
+RD ++I D++ L + GHT + C+ + + +I+G +D V+VWD +
Sbjct: 150 LRDNTIKIWDKNT---LECKRILTGHTGSVLCLQYD-----ERVIITGSSDSTVRVWDVN 201
Query: 298 RFQGVQT 304
+ + T
Sbjct: 202 TGEMLNT 208
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D ++ I D +SV HTA +C++F+ + E L +G DK V +WD
Sbjct: 249 DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEF--ILATGSADKTVALWDLRNL 306
Query: 300 Q 300
+
Sbjct: 307 K 307
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 63/156 (40%), Gaps = 9/156 (5%)
Query: 10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDL-------RSKDVQLVTDVGNGPVT 62
RLRGH+ + + G + S+ +D IC +D+ + D + + V
Sbjct: 172 RLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231
Query: 63 SLCFKSGNEDII-YVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSF-LAC 120
+ + +E + V+ +++ +D + +P S + + E+N + NP S F LA
Sbjct: 232 DVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILAT 291
Query: 121 ADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156
V + D+R L H VQ+ P
Sbjct: 292 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 327
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 62/297 (20%), Positives = 113/297 (38%), Gaps = 46/297 (15%)
Query: 11 LRGHKATATCCIASRDRPGF--VASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS 68
L GH++ T I P F + S+ ED I +D + D + V + F
Sbjct: 104 LSGHRSPVTRVIF---HPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 160
Query: 69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVK 128
+ + S+ +K +D R + +++N ++ + P + A +K
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHN---VSSVSIMPNGDHIVSASRDKTIK 217
Query: 129 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNA-GQCYNPAFVHAIAIP-- 185
+ +++ K+ GH V+ P +G C N V +
Sbjct: 218 MWEVQTGYCVKTF-TGHREWVRMVR----------PNQDGTLIASCSNDQTVRVWVVATK 266
Query: 186 --DADMLDKTNKI-CVVAKGDGVVDVINIESELNISRSKSTTKP----LKGSQSTSKVNI 238
A++ + + + C+ + I SE S +K + KP L GS
Sbjct: 267 ECKAELREHRHVVECISWAPESSYSSI---SEATGSETKKSGKPGPFLLSGS-------- 315
Query: 239 RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 295
RD +++ D S G L ++ GH V +F GK+++S +DK ++VWD
Sbjct: 316 RDKTIKMWDVSTGMCL---MTLVGHDNWVRGV---LFHSGGKFILSCADDKTLRVWD 366
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 276 GERGKYLISGGNDKLVKVWDCS 297
G+ G +L+SG DK +K+WD S
Sbjct: 305 GKPGPFLLSGSRDKTIKMWDVS 326
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 5/125 (4%)
Query: 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS 68
R L GH +CC D V SSG+ C W D+ + G V SL
Sbjct: 148 RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALW-DIETGQQTTTFTGHTGDVMSLSLAP 205
Query: 69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVK 128
+ + K +DV +++ ++ +IN I P + A D +
Sbjct: 206 DTRLFVSGACDASAKLWDVREGMC---RQTFTGHESDINAICFFPNGNAFATGSDDATCR 262
Query: 129 IIDIR 133
+ D+R
Sbjct: 263 LFDLR 267
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 5/125 (4%)
Query: 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS 68
R L GH +CC D V SSG+ C W D+ + G V SL
Sbjct: 137 RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALW-DIETGQQTTTFTGHTGDVMSLSLAP 194
Query: 69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVK 128
+ + K +DV +++ ++ +IN I P + A D +
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMC---RQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 129 IIDIR 133
+ D+R
Sbjct: 252 LFDLR 256
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 5/125 (4%)
Query: 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS 68
R L GH +CC D V SSG+ C W D+ + G V SL
Sbjct: 137 RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALW-DIETGQQTTTFTGHTGDVMSLSLAP 194
Query: 69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVK 128
+ + K +DV +++ ++ +IN I P + A D +
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMC---RQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 129 IIDIR 133
+ D+R
Sbjct: 252 LFDLR 256
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 5/125 (4%)
Query: 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS 68
R L GH +CC D V SSG+ C W D+ + G V SL
Sbjct: 137 RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALW-DIETGQQTTTFTGHTGDVMSLSLAP 194
Query: 69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVK 128
+ + K +DV +++ ++ +IN I P + A D +
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMC---RQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 129 IIDIR 133
+ D+R
Sbjct: 252 LFDLR 256
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 5/125 (4%)
Query: 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS 68
R L GH +CC D V SSG+ C W D+ + G V SL
Sbjct: 137 RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALW-DIETGQQTTTFTGHTGDVMSLSLAP 194
Query: 69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVK 128
+ + K +DV +++ ++ +IN I P + A D +
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMC---RQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 129 IIDIR 133
+ D+R
Sbjct: 252 LFDLR 256
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 239 RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS 297
RD + + + G + +H S G HT SCV FS + ++SGG D LVKVWD +
Sbjct: 129 RDNALRVWNVKG-ECMHT-LSRGAHTDWVSCVRFSPSLD-APVIVSGGWDNLVKVWDLA 184
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D ++ I D ++V HTA +C++F+ + E L +G DK V +WD
Sbjct: 253 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF--ILATGSADKTVALWDLRNL 310
Query: 300 Q 300
+
Sbjct: 311 K 311
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D ++ I D ++V HTA +C++F+ + E L +G DK V +WD
Sbjct: 255 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF--ILATGSADKTVALWDLRNL 312
Query: 300 Q 300
+
Sbjct: 313 K 313
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 16/105 (15%)
Query: 199 VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD---QSGGKRLH 255
V G+G+VD+ ++ES+ + + + G Q+ +V +L +SG H
Sbjct: 151 VGLGNGLVDIYDVESQTKL-------RTMAGHQA--RVGCLSWNRHVLSSGSRSGAIHHH 201
Query: 256 ----LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC 296
++ +G +S V + G L SGGND +V++WD
Sbjct: 202 DVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDA 246
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D ++ I D ++V HTA +C++F+ + E L +G DK V +WD
Sbjct: 257 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF--ILATGSADKTVALWDLRNL 314
Query: 300 Q 300
+
Sbjct: 315 K 315
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D ++ I D + V HTA +C++F+ + E L +G DK V +WD
Sbjct: 251 DQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEF--ILATGSADKTVALWDLRNL 308
Query: 300 Q 300
+
Sbjct: 309 K 309
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 31/156 (19%), Positives = 62/156 (39%), Gaps = 9/156 (5%)
Query: 10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK-------DVQLVTDVGNGPVT 62
RLRGH+ + + G + S+ +D +C +D+ + D + + + V
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 63 SLCFKSGNEDII-YVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSF-LAC 120
+ + +E + V+ +++ +D + +P + + E+N + NP S F LA
Sbjct: 234 DVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT 293
Query: 121 ADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156
V + D+R L H V + P
Sbjct: 294 GSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSP 329
>pdb|1J1I|A Chain A, Crystal Structure Of A His-Tagged Serine Hydrolase
Involved In The Carbazole Degradation (Carc Enzyme)
Length = 296
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 18/124 (14%)
Query: 87 VHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHS 146
V + RP+ +Y++ +E + +V A +DG + I Y + A
Sbjct: 144 VEIHEDLRPIINYDFTREGMVHLVK-------ALTNDGFKIDDAMINSRYTYATDEATRK 196
Query: 147 SICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV 206
+ +++Q+I G Y+P F+ + +P + K +K+ V +
Sbjct: 197 AYVATMQWI-----------REQGGLFYDPEFIRKVQVPTLVVQGKDDKVVPVETAYKFL 245
Query: 207 DVIN 210
D+I+
Sbjct: 246 DLID 249
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 282 LISGGNDKLVKVWDCSRFQ 300
+IS GNDK+VK W+ ++FQ
Sbjct: 169 IISAGNDKMVKAWNLNQFQ 187
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 282 LISGGNDKLVKVWDCSRFQ 300
+IS GNDK+VK W+ ++FQ
Sbjct: 169 IISAGNDKMVKAWNLNQFQ 187
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 282 LISGGNDKLVKVWDCSRFQ 300
+IS GNDK+VK W+ ++FQ
Sbjct: 169 IISAGNDKMVKAWNLNQFQ 187
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 282 LISGGNDKLVKVWDCSRFQ 300
+IS GNDK+VK W+ ++FQ
Sbjct: 169 IISAGNDKMVKAWNLNQFQ 187
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 282 LISGGNDKLVKVWDCSRFQ 300
+IS GNDK+VK W+ ++FQ
Sbjct: 163 IISAGNDKMVKAWNLNQFQ 181
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D ++ I D + V HTA +C++F+ + E L +G DK V +WD
Sbjct: 251 DQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEF--ILATGSADKTVALWDLRNL 308
Query: 300 Q 300
+
Sbjct: 309 K 309
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 31/156 (19%), Positives = 62/156 (39%), Gaps = 9/156 (5%)
Query: 10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK-------DVQLVTDVGNGPVT 62
RLRGH+ + + G + S+ +D +C +D+ + D + + + V
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 63 SLCFKSGNEDII-YVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSF-LAC 120
+ + +E + V+ +++ +D + +P + + E+N + NP S F LA
Sbjct: 234 DVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT 293
Query: 121 ADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156
V + D+R L H V + P
Sbjct: 294 GSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSP 329
>pdb|2ZE3|A Chain A, Crystal Structure Of Dfa0005 Complexed With
Alpha-Ketoglutarate: A Novel Member Of The IclPEPM
SUPERFAMILY FROM ALKALI-Tolerant Deinococcus Ficus
Length = 275
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 11 LRGHKATATCCIASRDRPG-FVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCF 66
L+GH AT +A R G A +G DG L+S+D++ + D P+ + F
Sbjct: 156 LKGHGATDEERLAETVRRGQAYADAGADGIFVPLALQSQDIRALADALRVPLNVMAF 212
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
Query: 234 SKVNIRDAEMEILDQSGG--------KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG 285
S + +++M+IL SG + L S GH A C+ + E G +SG
Sbjct: 158 SACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAP-SETGNTFVSG 216
Query: 286 GNDKLVKVWDCSRFQGVQ 303
G DK VWD Q VQ
Sbjct: 217 GCDKKAMVWDMRSGQCVQ 234
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 282 LISGGNDKLVKVWDCSRFQ 300
+IS GNDK VK W+ ++FQ
Sbjct: 169 IISAGNDKXVKAWNLNQFQ 187
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 279 GKYLISGGNDKLVKVWDCSRFQG 301
G++L SGGND LV VW + +G
Sbjct: 253 GRHLASGGNDNLVNVWPSAPGEG 275
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 279 GKYLISGGNDKLVKVWDCSRFQG 301
G++L SGGND LV VW + +G
Sbjct: 242 GRHLASGGNDNLVNVWPSAPGEG 264
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 275 FGERGKYLISGGNDKLVKVWD 295
F GK+L +G D+L+++WD
Sbjct: 131 FSPDGKFLATGAEDRLIRIWD 151
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 279 GKYLISGGNDKLVKVWDCSRFQG 301
G++L SGGND LV VW + +G
Sbjct: 162 GRHLASGGNDNLVNVWPSAPGEG 184
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 262 GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ 303
GHT ASC+ S G + L +GG D V+ WD + +Q
Sbjct: 181 GHTDGASCIDISNDGTK---LWTGGLDNTVRSWDLREGRQLQ 219
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 8/129 (6%)
Query: 31 VASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP 90
+AS G D + F + + L V F S + I S+ K+VK +D
Sbjct: 637 IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD---S 693
Query: 91 ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGD--VKIIDIRQ-HCLYKSLRAGHSS 147
A+ + + +Y+ + E++N KS+ L A D +K+ D+ Q C ++ GH++
Sbjct: 694 ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC--RNTMFGHTN 751
Query: 148 ICSSVQFIP 156
+ +F P
Sbjct: 752 SVNHCRFSP 760
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLI--SGGNDKLVKVWDCS 297
D +++I D + GK +H + H+ +C F+ + +L+ +G ND +K+WD +
Sbjct: 685 DKKVKIWDSATGKLVH---TYDEHSEQVNCCHFT---NKSNHLLLATGSNDFFLKLWDLN 738
Query: 298 R 298
+
Sbjct: 739 Q 739
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 8/129 (6%)
Query: 31 VASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP 90
+AS G D + F + + L V F S + I S+ K+VK +D
Sbjct: 630 IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD---S 686
Query: 91 ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGD--VKIIDIRQ-HCLYKSLRAGHSS 147
A+ + + +Y+ + E++N KS+ L A D +K+ D+ Q C ++ GH++
Sbjct: 687 ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC--RNTMFGHTN 744
Query: 148 ICSSVQFIP 156
+ +F P
Sbjct: 745 SVNHCRFSP 753
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLI--SGGNDKLVKVWDCS 297
D +++I D + GK +H + H+ +C F+ + +L+ +G ND +K+WD +
Sbjct: 678 DKKVKIWDSATGKLVH---TYDEHSEQVNCCHFT---NKSNHLLLATGSNDFFLKLWDLN 731
Query: 298 R 298
+
Sbjct: 732 Q 732
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 56 VGNGPVTSLCFKSGNED----IIYVSSGKEVKSFDVHMPASWRPLESYNYN 102
VG G SL +ED ++ + +G+E D+ PA+W L+ +Y+
Sbjct: 23 VGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQGRSYD 73
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 254 LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 295
+ Y+ H + + ++ S GKY+ +GG DK + +WD
Sbjct: 203 FQIRYTFKAHESNVNHLSIS---PNGKYIATGGKDKKLLIWD 241
>pdb|4E4G|A Chain A, Crystal Structure Of Putative Methylmalonate-Semialdehyde
Dehydrogenase From Sinorhizobium Meliloti 1021
pdb|4E4G|B Chain B, Crystal Structure Of Putative Methylmalonate-Semialdehyde
Dehydrogenase From Sinorhizobium Meliloti 1021
pdb|4E4G|C Chain C, Crystal Structure Of Putative Methylmalonate-Semialdehyde
Dehydrogenase From Sinorhizobium Meliloti 1021
pdb|4E4G|D Chain D, Crystal Structure Of Putative Methylmalonate-Semialdehyde
Dehydrogenase From Sinorhizobium Meliloti 1021
pdb|4E4G|E Chain E, Crystal Structure Of Putative Methylmalonate-Semialdehyde
Dehydrogenase From Sinorhizobium Meliloti 1021
pdb|4E4G|F Chain F, Crystal Structure Of Putative Methylmalonate-Semialdehyde
Dehydrogenase From Sinorhizobium Meliloti 1021
pdb|4E4G|G Chain G, Crystal Structure Of Putative Methylmalonate-Semialdehyde
Dehydrogenase From Sinorhizobium Meliloti 1021
pdb|4E4G|H Chain H, Crystal Structure Of Putative Methylmalonate-Semialdehyde
Dehydrogenase From Sinorhizobium Meliloti 1021
Length = 521
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 162 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG 202
G NG QC+ A H I PDAD+ N + G
Sbjct: 258 GTAAXNGKRAQCFGGAKNHXIIXPDADLDQAANALIGAGYG 298
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,381,176
Number of Sequences: 62578
Number of extensions: 429482
Number of successful extensions: 1043
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 838
Number of HSP's gapped (non-prelim): 233
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)